Query 009255
Match_columns 539
No_of_seqs 676 out of 3055
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 22:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1E-43 3.5E-48 352.7 40.6 490 8-529 82-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-40 4.1E-45 330.7 38.1 486 22-538 65-570 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-30 1.2E-34 240.9 45.6 377 88-528 7-383 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.9E-30 2.3E-34 238.9 46.2 383 51-497 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-29 3.9E-34 240.2 24.1 206 28-233 8-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.5E-29 5E-34 239.5 24.4 196 3-198 18-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 3.7E-27 1.3E-31 229.4 41.9 461 10-525 6-490 (514)
8 2gw1_A Mitochondrial precursor 100.0 4.1E-26 1.4E-30 222.1 35.1 440 46-538 7-469 (514)
9 3fp2_A TPR repeat-containing p 100.0 1.6E-25 5.3E-30 219.2 38.4 440 46-520 26-498 (537)
10 3fp2_A TPR repeat-containing p 100.0 1.1E-24 3.9E-29 213.0 38.0 431 10-460 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 9.1E-24 3.1E-28 201.7 39.2 376 7-414 23-444 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 8.7E-24 3E-28 201.9 39.0 349 79-460 25-411 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1E-21 3.6E-26 181.4 37.7 332 149-529 2-351 (359)
14 2xm6_A Protein corresponding t 99.9 1.2E-19 4.2E-24 174.5 49.5 370 93-510 56-466 (490)
15 2xm6_A Protein corresponding t 99.9 1.5E-19 5E-24 173.9 48.0 379 99-527 26-449 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 8.8E-21 3E-25 175.2 37.7 317 114-460 2-336 (359)
17 3hym_B Cell division cycle pro 99.9 4.5E-21 1.5E-25 174.9 30.8 289 219-532 21-319 (330)
18 2ooe_A Cleavage stimulation fa 99.9 2.8E-19 9.7E-24 173.7 45.0 428 33-510 2-491 (530)
19 2ooe_A Cleavage stimulation fa 99.9 6.5E-19 2.2E-23 171.2 45.0 424 7-460 10-493 (530)
20 3hym_B Cell division cycle pro 99.9 2.2E-20 7.6E-25 170.3 31.4 293 183-499 20-322 (330)
21 1fch_A Peroxisomal targeting s 99.9 2.4E-20 8.2E-25 172.9 25.2 276 223-510 67-358 (368)
22 1fch_A Peroxisomal targeting s 99.9 7.9E-20 2.7E-24 169.4 25.3 282 231-538 36-350 (368)
23 1xi4_A Clathrin heavy chain; a 99.9 1.7E-16 5.9E-21 159.6 48.3 429 12-506 987-1440(1630)
24 4eqf_A PEX5-related protein; a 99.9 5.5E-20 1.9E-24 170.2 21.1 278 221-508 66-353 (365)
25 4g1t_A Interferon-induced prot 99.8 3.8E-18 1.3E-22 163.8 34.2 393 78-520 49-469 (472)
26 1xi4_A Clathrin heavy chain; a 99.8 4.9E-16 1.7E-20 156.4 48.2 389 43-503 983-1376(1630)
27 4eqf_A PEX5-related protein; a 99.8 1E-19 3.6E-24 168.3 20.4 235 254-510 64-309 (365)
28 4g1t_A Interferon-induced prot 99.8 1.7E-17 5.7E-22 159.3 34.4 388 42-462 48-462 (472)
29 1b89_A Protein (clathrin heavy 99.8 1.9E-17 6.4E-22 149.2 32.1 347 22-420 15-368 (449)
30 3cv0_A Peroxisome targeting si 99.8 1.1E-18 3.9E-23 158.7 24.9 277 187-510 23-314 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 3.6E-18 1.2E-22 151.1 26.6 258 232-522 11-273 (291)
32 3cv0_A Peroxisome targeting si 99.8 3.4E-18 1.2E-22 155.5 26.4 260 254-538 20-306 (327)
33 1b89_A Protein (clathrin heavy 99.8 4.3E-18 1.5E-22 153.3 25.7 282 92-417 15-304 (449)
34 3mkr_A Coatomer subunit epsilo 99.8 2.5E-17 8.6E-22 145.7 27.1 252 195-460 9-265 (291)
35 3uq3_A Heat shock protein STI1 99.8 2.6E-17 8.8E-22 144.1 24.2 241 255-526 5-255 (258)
36 2pl2_A Hypothetical conserved 99.8 3.8E-17 1.3E-21 138.3 21.1 200 288-510 3-213 (217)
37 3e4b_A ALGK; tetratricopeptide 99.8 7.3E-17 2.5E-21 152.5 25.4 346 51-460 9-388 (452)
38 3e4b_A ALGK; tetratricopeptide 99.8 2.4E-16 8.3E-21 148.9 27.6 386 14-459 7-421 (452)
39 3u4t_A TPR repeat-containing p 99.8 1.4E-16 4.9E-21 140.6 24.2 254 255-530 3-267 (272)
40 2pl2_A Hypothetical conserved 99.8 1.1E-16 3.9E-21 135.3 21.1 200 7-212 2-212 (217)
41 1ouv_A Conserved hypothetical 99.7 1.3E-14 4.4E-19 128.0 31.5 229 254-519 5-257 (273)
42 2h6f_A Protein farnesyltransfe 99.7 8.5E-16 2.9E-20 140.4 24.3 245 255-525 97-360 (382)
43 4e6h_A MRNA 3'-END-processing 99.7 1.1E-13 3.6E-18 135.1 40.1 454 26-524 48-581 (679)
44 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5.2E-20 132.8 24.3 225 222-460 7-237 (258)
45 2q7f_A YRRB protein; TPR, prot 99.7 4.7E-16 1.6E-20 134.7 19.5 217 289-529 22-238 (243)
46 4e6h_A MRNA 3'-END-processing 99.7 6.6E-13 2.3E-17 129.5 42.2 428 7-460 63-571 (679)
47 2ho1_A Type 4 fimbrial biogene 99.7 3.7E-15 1.3E-19 129.8 24.1 212 290-524 37-249 (252)
48 3u4t_A TPR repeat-containing p 99.7 6.3E-15 2.2E-19 130.0 25.8 236 221-460 4-251 (272)
49 2vq2_A PILW, putative fimbrial 99.7 9.3E-15 3.2E-19 124.8 24.9 213 289-524 7-222 (225)
50 2h6f_A Protein farnesyltransfe 99.7 7.6E-15 2.6E-19 134.1 23.9 249 220-494 97-365 (382)
51 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.4E-15 1.5E-19 131.2 21.7 245 232-505 17-269 (275)
52 3spa_A Mtrpol, DNA-directed RN 99.7 7.5E-17 2.6E-21 157.3 10.6 149 11-164 128-286 (1134)
53 1ouv_A Conserved hypothetical 99.7 1.3E-13 4.5E-18 121.4 30.8 224 9-250 5-252 (273)
54 3spa_A Mtrpol, DNA-directed RN 99.7 6.4E-17 2.2E-21 157.7 9.9 128 80-211 127-258 (1134)
55 2ho1_A Type 4 fimbrial biogene 99.7 4.8E-14 1.7E-18 122.7 26.8 202 255-460 37-239 (252)
56 2q7f_A YRRB protein; TPR, prot 99.7 5.2E-15 1.8E-19 128.0 20.3 202 254-460 22-223 (243)
57 3vtx_A MAMA; tetratricopeptide 99.7 1.1E-14 3.9E-19 119.8 21.2 173 324-519 4-176 (184)
58 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.7E-15 1.2E-19 131.7 19.4 224 20-249 15-244 (275)
59 2vq2_A PILW, putative fimbrial 99.7 1.3E-13 4.6E-18 117.5 26.9 203 254-460 7-212 (225)
60 3sf4_A G-protein-signaling mod 99.7 5.6E-15 1.9E-19 138.7 19.2 282 184-510 8-335 (406)
61 4a1s_A PINS, partner of inscut 99.6 6.4E-15 2.2E-19 138.5 18.5 241 258-511 89-372 (411)
62 3sf4_A G-protein-signaling mod 99.6 1.1E-14 3.8E-19 136.7 17.8 310 147-500 6-365 (406)
63 2ond_A Cleavage stimulation fa 99.6 8.1E-13 2.8E-17 118.4 28.2 219 272-510 33-269 (308)
64 4abn_A Tetratricopeptide repea 99.6 3.3E-14 1.1E-18 135.2 19.9 214 271-508 84-318 (474)
65 4abn_A Tetratricopeptide repea 99.6 2.7E-14 9.4E-19 135.8 19.2 209 305-538 83-312 (474)
66 3ro2_A PINS homolog, G-protein 99.6 2.3E-14 7.7E-19 130.7 17.5 207 291-510 84-331 (338)
67 3ulq_A Response regulator aspa 99.6 8.7E-14 3E-18 129.2 21.5 230 261-510 109-367 (383)
68 3vtx_A MAMA; tetratricopeptide 99.6 2.8E-13 9.7E-18 111.3 20.9 168 289-460 4-171 (184)
69 4a1s_A PINS, partner of inscut 99.6 4.1E-14 1.4E-18 133.0 17.5 278 151-460 49-373 (411)
70 4i17_A Hypothetical protein; T 99.6 2.6E-13 8.9E-18 115.9 20.1 209 289-528 6-224 (228)
71 3ulq_A Response regulator aspa 99.6 6E-13 2E-17 123.6 23.7 231 227-460 110-369 (383)
72 2ond_A Cleavage stimulation fa 99.6 7.3E-12 2.5E-16 112.2 28.4 219 237-460 33-271 (308)
73 3nf1_A KLC 1, kinesin light ch 99.5 4.7E-14 1.6E-18 127.1 13.7 236 256-510 28-306 (311)
74 3ro2_A PINS homolog, G-protein 99.5 1.8E-13 6.3E-18 124.7 17.6 277 152-460 7-333 (338)
75 3q15_A PSP28, response regulat 99.5 1.7E-12 5.8E-17 120.2 21.8 230 260-510 106-364 (378)
76 4gyw_A UDP-N-acetylglucosamine 99.5 8.4E-13 2.9E-17 130.5 20.0 165 324-510 8-173 (723)
77 3q15_A PSP28, response regulat 99.5 5.6E-12 1.9E-16 116.7 23.5 230 227-460 108-366 (378)
78 4gyw_A UDP-N-acetylglucosamine 99.5 5.7E-13 1.9E-17 131.6 17.2 158 358-538 7-165 (723)
79 1hz4_A MALT regulatory protein 99.5 3.7E-11 1.3E-15 111.1 28.6 203 258-460 96-323 (373)
80 3as5_A MAMA; tetratricopeptide 99.5 4.1E-12 1.4E-16 104.5 19.7 164 326-510 9-172 (186)
81 1hz4_A MALT regulatory protein 99.5 1.9E-11 6.5E-16 113.1 25.8 268 230-510 24-321 (373)
82 4i17_A Hypothetical protein; T 99.5 1.5E-11 5.2E-16 104.9 21.9 196 253-460 5-210 (228)
83 3nf1_A KLC 1, kinesin light ch 99.5 2.9E-12 1E-16 115.2 18.0 242 7-249 24-307 (311)
84 3qky_A Outer membrane assembly 99.4 1.2E-11 4E-16 108.0 18.7 213 289-538 14-252 (261)
85 3as5_A MAMA; tetratricopeptide 99.4 2.4E-11 8.2E-16 99.8 18.8 164 11-178 9-172 (186)
86 4ga2_A E3 SUMO-protein ligase 99.4 1.1E-12 3.7E-17 103.3 9.3 145 366-532 3-148 (150)
87 3edt_B KLC 2, kinesin light ch 99.4 6E-12 2E-16 111.4 14.1 232 266-510 12-280 (283)
88 1qqe_A Vesicular transport pro 99.4 2.1E-11 7.1E-16 108.2 16.9 209 299-525 46-281 (292)
89 3urz_A Uncharacterized protein 99.3 3.5E-11 1.2E-15 100.6 15.6 136 364-522 58-195 (208)
90 3mv2_B Coatomer subunit epsilo 99.3 5.1E-10 1.7E-14 96.8 22.2 197 309-523 85-292 (310)
91 3edt_B KLC 2, kinesin light ch 99.3 2.4E-11 8.3E-16 107.5 13.8 228 231-459 12-281 (283)
92 2fo7_A Synthetic consensus TPR 99.3 1.6E-10 5.5E-15 89.1 16.7 130 362-511 3-132 (136)
93 3qky_A Outer membrane assembly 99.3 1.6E-10 5.3E-15 100.8 18.3 188 253-460 13-225 (261)
94 2pzi_A Probable serine/threoni 99.3 3.9E-11 1.3E-15 119.4 16.0 155 301-460 402-564 (681)
95 2uy1_A Cleavage stimulation fa 99.3 1.1E-08 3.8E-13 97.1 31.8 125 361-510 287-412 (493)
96 3rjv_A Putative SEL1 repeat pr 99.3 1.1E-09 3.6E-14 91.9 21.8 176 308-512 4-198 (212)
97 2pzi_A Probable serine/threoni 99.3 1.2E-10 4.1E-15 115.9 17.7 173 266-445 402-583 (681)
98 1qqe_A Vesicular transport pro 99.3 5.3E-10 1.8E-14 99.1 20.0 194 229-422 46-267 (292)
99 4gco_A Protein STI-1; structur 99.3 1.2E-10 4.2E-15 88.1 13.3 112 396-528 14-125 (126)
100 2uy1_A Cleavage stimulation fa 99.3 3E-08 1E-12 94.1 32.5 378 23-458 7-412 (493)
101 3urz_A Uncharacterized protein 99.3 2.7E-10 9.4E-15 95.2 16.6 127 330-460 59-187 (208)
102 3mv2_B Coatomer subunit epsilo 99.3 3E-09 1E-13 92.0 23.2 244 18-285 21-283 (310)
103 4ga2_A E3 SUMO-protein ligase 99.2 4E-11 1.4E-15 94.2 10.5 146 331-497 3-149 (150)
104 3qou_A Protein YBBN; thioredox 99.2 2.8E-10 9.6E-15 100.4 16.6 165 323-510 115-283 (287)
105 3dra_A Protein farnesyltransfe 99.2 5.2E-09 1.8E-13 91.6 24.2 235 268-523 46-298 (306)
106 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.3E-09 4.6E-14 92.3 20.1 189 289-517 3-217 (225)
107 2r5s_A Uncharacterized protein 99.2 1.5E-10 5E-15 94.0 13.3 164 327-510 8-172 (176)
108 3qou_A Protein YBBN; thioredox 99.2 2.5E-10 8.6E-15 100.7 13.7 159 357-538 114-275 (287)
109 3gyz_A Chaperone protein IPGC; 99.2 4.4E-10 1.5E-14 87.6 13.1 104 394-518 35-138 (151)
110 2vsy_A XCC0866; transferase, g 99.2 4.6E-10 1.6E-14 109.9 16.0 153 304-460 3-158 (568)
111 2fo7_A Synthetic consensus TPR 99.2 1.5E-09 5.1E-14 83.6 15.7 129 12-143 3-131 (136)
112 2r5s_A Uncharacterized protein 99.1 6.9E-10 2.4E-14 90.0 13.3 164 11-178 7-172 (176)
113 3rjv_A Putative SEL1 repeat pr 99.1 7.5E-09 2.6E-13 86.6 19.6 177 28-216 4-199 (212)
114 3dra_A Protein farnesyltransfe 99.1 6.5E-08 2.2E-12 84.7 25.6 218 237-459 50-287 (306)
115 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.2E-08 4.2E-13 86.4 20.2 186 254-460 3-214 (225)
116 2ifu_A Gamma-SNAP; membrane fu 99.1 2.1E-09 7.2E-14 96.0 16.0 132 327-460 78-224 (307)
117 2vsy_A XCC0866; transferase, g 99.1 3E-09 1E-13 104.1 18.4 153 268-424 2-157 (568)
118 2ifu_A Gamma-SNAP; membrane fu 99.1 9.9E-10 3.4E-14 98.1 13.7 203 268-509 4-222 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.1 8E-09 2.7E-13 86.8 18.0 146 362-517 8-154 (213)
120 3u3w_A Transcriptional activat 99.1 2.9E-08 9.8E-13 88.0 22.4 168 330-510 80-265 (293)
121 2vgx_A Chaperone SYCD; alterna 99.1 9.2E-10 3.1E-14 86.1 11.1 98 394-510 20-117 (148)
122 4gco_A Protein STI-1; structur 99.1 6.2E-09 2.1E-13 78.7 14.6 99 360-460 13-111 (126)
123 3upv_A Heat shock protein STI1 99.0 5.5E-09 1.9E-13 79.3 12.9 114 395-529 4-123 (126)
124 2e2e_A Formate-dependent nitri 99.0 2.4E-09 8.4E-14 86.9 11.5 125 372-518 22-149 (177)
125 2qfc_A PLCR protein; TPR, HTH, 99.0 8.3E-08 2.8E-12 85.0 21.8 171 327-510 77-265 (293)
126 1a17_A Serine/threonine protei 99.0 1.7E-08 5.9E-13 80.8 15.9 131 360-510 13-145 (166)
127 4f3v_A ESX-1 secretion system 99.0 2.7E-08 9.1E-13 84.9 16.6 140 362-524 104-247 (282)
128 2xcb_A PCRH, regulatory protei 99.0 1.4E-09 4.7E-14 84.6 7.8 97 395-510 18-114 (142)
129 2lni_A Stress-induced-phosphop 99.0 1.1E-08 3.7E-13 78.4 12.7 112 395-527 16-127 (133)
130 1hh8_A P67PHOX, NCF-2, neutrop 99.0 4.9E-08 1.7E-12 81.9 17.5 128 328-460 9-151 (213)
131 1na0_A Designed protein CTPR3; 98.9 1.7E-08 5.8E-13 76.3 13.1 112 395-527 9-120 (125)
132 4gcn_A Protein STI-1; structur 98.9 9.7E-09 3.3E-13 77.8 11.6 108 396-521 9-120 (127)
133 3q7a_A Farnesyltransferase alp 98.9 5E-07 1.7E-11 79.9 24.0 241 267-525 66-344 (349)
134 3gw4_A Uncharacterized protein 98.9 1.2E-08 4.2E-13 84.9 13.3 160 336-510 3-175 (203)
135 3u3w_A Transcriptional activat 98.9 4.3E-07 1.5E-11 80.4 23.6 165 296-460 81-267 (293)
136 2lni_A Stress-induced-phosphop 98.9 2.9E-08 9.9E-13 76.0 13.8 120 357-497 13-133 (133)
137 1p5q_A FKBP52, FK506-binding p 98.9 2.4E-08 8.2E-13 90.1 15.3 133 359-510 146-293 (336)
138 2vyi_A SGTA protein; chaperone 98.9 2.1E-08 7.4E-13 76.4 12.9 112 396-528 13-124 (131)
139 3gyz_A Chaperone protein IPGC; 98.9 2E-08 6.8E-13 78.2 12.2 100 359-460 35-134 (151)
140 2vyi_A SGTA protein; chaperone 98.9 4.4E-08 1.5E-12 74.7 14.0 120 359-498 11-130 (131)
141 1elw_A TPR1-domain of HOP; HOP 98.9 4.4E-08 1.5E-12 73.0 13.7 112 395-527 4-115 (118)
142 2vgx_A Chaperone SYCD; alterna 98.9 1.2E-08 4.2E-13 79.6 10.9 111 347-460 9-119 (148)
143 1na0_A Designed protein CTPR3; 98.9 7.9E-08 2.7E-12 72.5 15.1 117 360-496 9-125 (125)
144 2qfc_A PLCR protein; TPR, HTH, 98.9 2.3E-07 7.8E-12 82.2 20.2 168 292-459 77-266 (293)
145 2fbn_A 70 kDa peptidylprolyl i 98.9 2.4E-09 8.1E-14 88.8 6.8 144 372-536 16-174 (198)
146 1a17_A Serine/threonine protei 98.9 2.7E-08 9.1E-13 79.7 12.7 123 395-538 13-137 (166)
147 3q49_B STIP1 homology and U bo 98.9 1.7E-08 5.7E-13 77.9 11.1 98 394-510 8-105 (137)
148 2c2l_A CHIP, carboxy terminus 98.9 1.2E-08 4.2E-13 89.5 11.5 194 289-510 3-198 (281)
149 2dba_A Smooth muscle cell asso 98.9 8.4E-08 2.9E-12 75.0 14.8 114 394-529 27-144 (148)
150 3q7a_A Farnesyltransferase alp 98.9 2.3E-06 7.8E-11 75.7 25.1 178 18-200 62-257 (349)
151 2c2l_A CHIP, carboxy terminus 98.9 2.9E-08 9.8E-13 87.2 13.2 194 8-213 2-198 (281)
152 3sz7_A HSC70 cochaperone (SGT) 98.9 1.5E-08 5E-13 81.0 10.2 99 360-460 11-109 (164)
153 1hxi_A PEX5, peroxisome target 98.8 2.6E-08 8.7E-13 74.6 10.7 100 397-517 19-118 (121)
154 4f3v_A ESX-1 secretion system 98.8 2.3E-07 8E-12 79.2 17.0 188 267-460 18-238 (282)
155 3rkv_A Putative peptidylprolyl 98.8 2.4E-08 8.2E-13 79.6 10.5 81 430-530 63-144 (162)
156 2e2e_A Formate-dependent nitri 98.8 3.8E-08 1.3E-12 79.8 11.7 122 336-460 21-145 (177)
157 1p5q_A FKBP52, FK506-binding p 98.8 4.1E-08 1.4E-12 88.6 12.9 141 374-537 127-283 (336)
158 3dss_A Geranylgeranyl transfer 98.8 3.4E-06 1.2E-10 74.3 24.5 222 272-520 47-311 (331)
159 2xev_A YBGF; tetratricopeptide 98.8 1.1E-07 3.8E-12 72.3 13.3 112 398-531 5-123 (129)
160 3k9i_A BH0479 protein; putativ 98.8 1.1E-08 3.9E-13 76.2 7.2 110 407-536 2-113 (117)
161 2kck_A TPR repeat; tetratricop 98.8 1.4E-07 4.9E-12 69.4 12.5 99 394-511 5-106 (112)
162 4gcn_A Protein STI-1; structur 98.8 9.4E-08 3.2E-12 72.3 11.6 100 360-460 8-113 (127)
163 3gw4_A Uncharacterized protein 98.8 9.4E-08 3.2E-12 79.4 12.8 158 302-460 4-177 (203)
164 1elw_A TPR1-domain of HOP; HOP 98.8 3.6E-07 1.2E-11 68.0 14.4 100 359-460 3-102 (118)
165 2fbn_A 70 kDa peptidylprolyl i 98.7 1.7E-07 5.9E-12 77.4 13.7 132 360-511 38-186 (198)
166 2xcb_A PCRH, regulatory protei 98.7 1.7E-07 5.9E-12 72.6 12.2 100 359-460 17-116 (142)
167 3upv_A Heat shock protein STI1 98.7 3.6E-07 1.2E-11 69.0 13.7 99 360-460 4-102 (126)
168 3sz7_A HSC70 cochaperone (SGT) 98.7 2.4E-07 8.3E-12 73.8 13.1 99 324-424 10-108 (164)
169 3dss_A Geranylgeranyl transfer 98.7 4.8E-06 1.7E-10 73.3 21.9 192 302-517 41-271 (331)
170 1elr_A TPR2A-domain of HOP; HO 98.7 2.8E-07 9.5E-12 70.1 11.6 109 395-521 4-116 (131)
171 3q49_B STIP1 homology and U bo 98.7 4.1E-07 1.4E-11 69.9 12.6 101 358-460 7-107 (137)
172 1dce_A Protein (RAB geranylger 98.7 9.6E-07 3.3E-11 85.2 17.6 173 341-536 45-244 (567)
173 1elr_A TPR2A-domain of HOP; HO 98.6 3.3E-07 1.1E-11 69.7 11.5 100 360-460 4-109 (131)
174 2hr2_A Hypothetical protein; a 98.6 4.6E-07 1.6E-11 69.6 11.9 92 398-510 14-130 (159)
175 4b4t_Q 26S proteasome regulato 98.6 1.1E-06 3.8E-11 82.8 17.4 169 328-510 58-244 (434)
176 2dba_A Smooth muscle cell asso 98.6 1.4E-06 4.6E-11 67.9 15.0 100 358-460 26-129 (148)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2.4E-07 8.4E-12 87.4 12.2 80 431-530 318-397 (457)
178 1ihg_A Cyclophilin 40; ppiase 98.6 1.8E-07 6E-12 85.4 10.8 87 430-536 273-359 (370)
179 3ro3_A PINS homolog, G-protein 98.6 2.8E-07 9.5E-12 73.2 10.8 137 361-510 10-157 (164)
180 1wao_1 Serine/threonine protei 98.6 4E-08 1.4E-12 93.1 6.5 123 365-507 11-135 (477)
181 2kck_A TPR repeat; tetratricop 98.6 5.9E-07 2E-11 66.0 11.4 100 359-460 5-107 (112)
182 1hxi_A PEX5, peroxisome target 98.6 4.6E-07 1.6E-11 67.7 10.4 97 362-460 19-115 (121)
183 1wao_1 Serine/threonine protei 98.6 1.5E-07 5.1E-12 89.2 9.0 124 330-456 11-136 (477)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1E-06 3.5E-11 83.1 14.3 131 360-510 268-414 (457)
185 2xev_A YBGF; tetratricopeptide 98.5 4.2E-06 1.4E-10 63.3 14.4 96 363-460 5-106 (129)
186 1ihg_A Cyclophilin 40; ppiase 98.5 1.3E-06 4.5E-11 79.6 13.1 122 363-504 226-363 (370)
187 1zu2_A Mitochondrial import re 98.5 2.1E-07 7.2E-12 71.2 6.5 99 407-527 14-134 (158)
188 2if4_A ATFKBP42; FKBP-like, al 98.5 3.6E-07 1.2E-11 82.5 8.6 151 326-517 180-332 (338)
189 2l6j_A TPR repeat-containing p 98.5 1E-06 3.5E-11 64.7 9.7 90 429-538 3-98 (111)
190 3rkv_A Putative peptidylprolyl 98.5 1.2E-06 4.1E-11 69.6 10.6 98 362-460 13-127 (162)
191 4b4t_Q 26S proteasome regulato 98.5 1.4E-05 4.8E-10 75.2 19.7 197 226-422 10-243 (434)
192 1dce_A Protein (RAB geranylger 98.5 1.1E-05 3.6E-10 78.0 18.9 173 306-500 45-244 (567)
193 2if4_A ATFKBP42; FKBP-like, al 98.4 6.5E-07 2.2E-11 80.7 8.9 130 360-528 179-308 (338)
194 3k9i_A BH0479 protein; putativ 98.4 4.7E-07 1.6E-11 67.3 5.9 87 373-460 3-91 (117)
195 3ro3_A PINS homolog, G-protein 98.4 2E-06 6.7E-11 68.2 10.0 134 327-460 11-159 (164)
196 2hr2_A Hypothetical protein; a 98.3 8.4E-06 2.9E-10 62.6 11.5 99 362-460 13-132 (159)
197 1klx_A Cysteine rich protein B 98.3 3.6E-05 1.2E-09 58.8 14.1 110 375-512 10-127 (138)
198 2kat_A Uncharacterized protein 98.3 4.3E-06 1.5E-10 61.8 8.6 79 413-510 3-81 (115)
199 3n71_A Histone lysine methyltr 98.3 6.7E-06 2.3E-10 77.3 11.8 132 369-511 318-464 (490)
200 2l6j_A TPR repeat-containing p 98.2 8.8E-07 3E-11 65.0 4.4 94 394-507 3-103 (111)
201 1klx_A Cysteine rich protein B 98.2 5.3E-05 1.8E-09 57.9 13.5 110 340-460 10-127 (138)
202 1na3_A Designed protein CTPR2; 98.2 1.2E-05 4E-10 56.3 9.1 78 430-527 9-86 (91)
203 3ma5_A Tetratricopeptide repea 98.2 6E-06 2E-10 59.1 7.4 82 428-527 5-87 (100)
204 1na3_A Designed protein CTPR2; 98.1 1.6E-05 5.6E-10 55.5 9.4 83 395-496 9-91 (91)
205 2kat_A Uncharacterized protein 98.1 8.7E-06 3E-10 60.1 7.5 80 379-460 4-83 (115)
206 1zu2_A Mitochondrial import re 98.1 9.3E-06 3.2E-10 62.2 7.6 87 372-460 14-121 (158)
207 3ly7_A Transcriptional activat 98.0 0.0002 6.7E-09 63.3 14.2 78 427-525 274-351 (372)
208 3n71_A Histone lysine methyltr 97.9 5.7E-05 2E-09 71.0 11.3 126 334-459 318-464 (490)
209 3qww_A SET and MYND domain-con 97.9 4.8E-05 1.6E-09 70.3 9.8 108 407-525 310-428 (433)
210 3ma5_A Tetratricopeptide repea 97.9 3.2E-05 1.1E-09 55.2 6.8 65 394-459 6-70 (100)
211 1pc2_A Mitochondria fission pr 97.8 0.00024 8.1E-09 53.8 10.5 93 412-525 15-112 (152)
212 3qwp_A SET and MYND domain-con 97.8 6E-05 2.1E-09 69.8 8.5 112 403-525 295-417 (429)
213 3bee_A Putative YFRE protein; 97.8 0.00018 6E-09 50.1 8.7 69 427-516 3-75 (93)
214 2v5f_A Prolyl 4-hydroxylase su 97.6 0.00039 1.3E-08 49.8 9.3 84 429-525 4-87 (104)
215 2kc7_A BFR218_protein; tetratr 97.6 0.00027 9.2E-09 50.1 8.3 65 435-519 5-70 (99)
216 3ly7_A Transcriptional activat 97.6 0.0014 4.8E-08 58.0 13.6 67 392-460 274-340 (372)
217 2kc7_A BFR218_protein; tetratr 97.6 0.00021 7.3E-09 50.6 7.0 59 401-460 6-65 (99)
218 3qww_A SET and MYND domain-con 97.3 0.00059 2E-08 63.1 7.7 88 372-459 310-411 (433)
219 3bee_A Putative YFRE protein; 97.3 0.0021 7.1E-08 44.6 8.7 66 394-460 5-73 (93)
220 3qwp_A SET and MYND domain-con 97.2 0.0017 5.8E-08 60.1 9.6 93 367-459 294-400 (429)
221 1nzn_A CGI-135 protein, fissio 97.1 0.0044 1.5E-07 45.0 9.3 93 412-525 18-115 (126)
222 4h7y_A Dual specificity protei 97.0 0.011 3.7E-07 44.0 10.7 99 394-512 12-124 (161)
223 1pc2_A Mitochondria fission pr 97.0 0.011 3.7E-07 44.7 11.0 82 377-460 15-101 (152)
224 3u64_A Protein TP_0956; tetrat 97.0 0.0097 3.3E-07 50.4 11.3 92 411-523 179-283 (301)
225 3lvg_A Clathrin heavy chain 1; 96.9 1.8E-06 6.3E-11 77.4 -12.0 244 10-275 54-324 (624)
226 2v5f_A Prolyl 4-hydroxylase su 96.8 0.01 3.5E-07 42.2 9.2 67 8-74 3-75 (104)
227 3mkq_A Coatomer beta'-subunit; 96.7 0.091 3.1E-06 53.7 19.1 155 18-211 607-762 (814)
228 3mkq_A Coatomer beta'-subunit; 96.7 0.069 2.4E-06 54.6 18.0 44 337-386 664-707 (814)
229 3lvg_A Clathrin heavy chain 1; 96.6 2.1E-05 7.4E-10 70.7 -7.6 215 8-244 81-315 (624)
230 3mkq_B Coatomer subunit alpha; 96.5 0.22 7.5E-06 38.8 16.0 44 21-70 16-59 (177)
231 4h7y_A Dual specificity protei 96.4 0.057 1.9E-06 40.3 10.6 103 7-111 10-125 (161)
232 3mkq_B Coatomer subunit alpha; 96.2 0.3 1E-05 38.0 16.3 99 91-210 16-114 (177)
233 3o48_A Mitochondria fission 1 96.1 0.15 5.2E-06 37.2 11.6 80 425-525 35-119 (134)
234 3u64_A Protein TP_0956; tetrat 96.1 0.065 2.2E-06 45.5 10.9 85 341-427 179-272 (301)
235 1wy6_A Hypothetical protein ST 96.1 0.26 8.8E-06 35.9 14.6 138 337-513 19-156 (172)
236 1nzn_A CGI-135 protein, fissio 96.1 0.072 2.5E-06 38.7 9.7 86 373-460 14-104 (126)
237 1y8m_A FIS1; mitochondria, unk 95.9 0.34 1.2E-05 35.8 13.3 78 427-525 36-118 (144)
238 4ady_A RPN2, 26S proteasome re 95.6 2.2 7.7E-05 43.1 35.1 270 229-527 383-671 (963)
239 1wy6_A Hypothetical protein ST 95.6 0.43 1.5E-05 34.8 14.1 57 158-215 99-155 (172)
240 3ffl_A Anaphase-promoting comp 95.5 0.022 7.5E-07 43.4 5.3 127 399-528 24-165 (167)
241 4gns_B Protein CSD3, chitin bi 95.3 0.098 3.3E-06 51.6 10.5 54 437-509 344-398 (754)
242 4b4t_P 26S proteasome regulato 95.2 1.3 4.3E-05 41.2 17.3 100 398-510 140-246 (445)
243 4ady_A RPN2, 26S proteasome re 95.0 3.5 0.00012 41.8 34.8 265 160-434 384-665 (963)
244 2ff4_A Probable regulatory pro 94.2 0.41 1.4E-05 43.5 11.2 74 432-523 173-251 (388)
245 1qsa_A Protein (soluble lytic 93.6 5.6 0.00019 38.6 26.2 265 188-510 75-347 (618)
246 3o48_A Mitochondria fission 1 93.5 1.2 4.2E-05 32.5 10.2 71 390-460 35-108 (134)
247 3ffl_A Anaphase-promoting comp 92.9 1.1 3.7E-05 34.3 9.5 120 327-459 22-151 (167)
248 4b4t_P 26S proteasome regulato 92.6 6.4 0.00022 36.4 19.7 189 23-212 29-245 (445)
249 1y8m_A FIS1; mitochondria, unk 92.5 2.4 8.3E-05 31.4 12.0 69 392-460 36-107 (144)
250 4gns_B Protein CSD3, chitin bi 92.1 1.4 4.6E-05 43.7 11.7 54 262-316 344-397 (754)
251 4b4t_R RPN7, 26S proteasome re 91.7 1.9 6.6E-05 39.7 11.9 62 397-458 133-196 (429)
252 2ff4_A Probable regulatory pro 91.6 1.3 4.6E-05 40.2 10.6 73 363-436 174-251 (388)
253 4fhn_B Nucleoporin NUP120; pro 91.5 4.2 0.00014 43.2 15.5 80 118-199 902-985 (1139)
254 3esl_A Checkpoint serine/threo 91.3 2 6.8E-05 34.1 9.6 50 411-460 95-145 (202)
255 1zbp_A Hypothetical protein VP 90.7 1.3 4.3E-05 37.1 8.4 71 438-528 5-75 (273)
256 1v54_E Cytochrome C oxidase po 90.1 3.3 0.00011 28.4 9.2 47 271-317 26-72 (109)
257 1v54_E Cytochrome C oxidase po 89.9 3.5 0.00012 28.3 10.1 49 341-389 26-74 (109)
258 2wpv_A GET4, UPF0363 protein Y 89.4 10 0.00034 32.9 20.6 168 258-459 36-217 (312)
259 4fhn_B Nucleoporin NUP120; pro 88.7 6.2 0.00021 41.9 14.1 149 84-239 816-990 (1139)
260 2y69_E Cytochrome C oxidase su 88.5 4.8 0.00016 29.3 8.8 62 62-124 70-131 (152)
261 2y69_E Cytochrome C oxidase su 87.3 6.9 0.00024 28.5 10.1 61 341-402 69-129 (152)
262 1zbp_A Hypothetical protein VP 86.0 2.3 7.9E-05 35.6 7.0 55 19-74 6-60 (273)
263 3lpz_A GET4 (YOR164C homolog); 86.0 17 0.00058 31.8 21.7 68 257-339 37-108 (336)
264 2wvi_A Mitotic checkpoint seri 84.3 8 0.00027 29.6 8.8 47 414-460 79-126 (164)
265 3lpz_A GET4 (YOR164C homolog); 84.1 21 0.00072 31.2 22.4 175 222-458 37-215 (336)
266 4b4t_R RPN7, 26S proteasome re 83.9 9.1 0.00031 35.3 11.0 119 26-144 110-237 (429)
267 1qsa_A Protein (soluble lytic 81.6 40 0.0014 32.7 33.8 413 12-506 9-437 (618)
268 2wpv_A GET4, UPF0363 protein Y 78.4 33 0.0011 29.7 21.2 167 293-510 36-216 (312)
269 3esl_A Checkpoint serine/threo 77.8 25 0.00084 28.0 9.8 49 341-389 95-144 (202)
270 4aez_C MAD3, mitotic spindle c 77.4 8.5 0.00029 31.2 7.2 55 447-517 131-185 (223)
271 2uwj_G Type III export protein 71.3 22 0.00074 24.3 7.1 13 61-73 22-34 (115)
272 2uwj_G Type III export protein 71.1 22 0.00075 24.3 7.4 80 23-110 19-98 (115)
273 2p58_C Putative type III secre 70.3 23 0.00079 24.3 8.0 11 92-102 52-62 (116)
274 2p58_C Putative type III secre 70.0 24 0.00081 24.2 8.3 87 23-118 20-106 (116)
275 3txn_A 26S proteasome regulato 69.5 65 0.0022 29.1 23.5 166 186-352 20-208 (394)
276 4a1g_A Mitotic checkpoint seri 69.3 34 0.0012 25.8 14.3 56 447-518 82-137 (152)
277 4b4t_S RPN3, 26S proteasome re 63.1 86 0.003 29.4 11.4 27 45-71 231-257 (523)
278 4a1g_A Mitotic checkpoint seri 62.3 48 0.0016 25.0 9.7 49 413-461 83-132 (152)
279 3txn_A 26S proteasome regulato 62.1 91 0.0031 28.1 26.9 298 151-461 20-345 (394)
280 3eiq_C Programmed cell death p 58.5 99 0.0034 27.4 10.6 64 188-252 220-285 (358)
281 1ya0_A SMG-7 transcript varian 57.1 83 0.0028 29.5 10.4 76 432-527 154-230 (497)
282 2wvi_A Mitotic checkpoint seri 56.1 66 0.0022 24.6 9.1 51 379-429 79-130 (164)
283 3eiq_C Programmed cell death p 56.1 90 0.0031 27.7 9.9 65 258-323 220-286 (358)
284 1wdy_A 2-5A-dependent ribonucl 54.4 47 0.0016 27.9 8.1 19 16-34 8-26 (285)
285 3kae_A CDC27, possible protein 53.1 76 0.0026 24.4 13.4 108 404-520 42-150 (242)
286 2w2u_A Hypothetical P60 katani 49.8 23 0.00077 23.4 3.9 17 494-510 31-47 (83)
287 2d2s_A Exocyst complex compone 49.4 1.1E+02 0.0037 25.2 9.1 23 16-38 24-46 (235)
288 2v6y_A AAA family ATPase, P60 48.1 25 0.00084 23.2 3.9 17 494-510 23-39 (83)
289 4aez_C MAD3, mitotic spindle c 48.0 47 0.0016 26.9 6.3 48 413-460 132-180 (223)
290 1bpo_A Protein (clathrin); cla 44.6 1.4E+02 0.0046 27.6 9.2 83 24-110 343-425 (494)
291 3ax2_A Mitochondrial import re 43.0 63 0.0022 20.6 5.0 37 487-525 22-58 (73)
292 3ltm_A Alpha-REP4; protein eng 42.2 1.3E+02 0.0043 23.8 17.6 17 79-95 32-48 (211)
293 2fe3_A Peroxide operon regulat 41.6 1.1E+02 0.0036 22.8 7.5 62 34-96 11-72 (145)
294 2xig_A Ferric uptake regulatio 41.1 1.1E+02 0.0038 22.9 7.4 62 34-96 16-77 (150)
295 4b4t_S RPN3, 26S proteasome re 40.9 78 0.0027 29.7 7.4 26 361-386 232-257 (523)
296 3jxi_A Vanilloid receptor-rela 40.8 33 0.0011 28.5 4.8 19 22-40 14-32 (260)
297 1mzb_A Ferric uptake regulatio 40.4 1.1E+02 0.0036 22.4 7.1 61 35-96 8-69 (136)
298 2nsz_A Programmed cell death p 40.0 1E+02 0.0036 22.3 6.7 24 259-282 11-34 (129)
299 3eyy_A Putative iron uptake re 38.9 94 0.0032 23.1 6.5 60 34-95 8-67 (145)
300 3jxi_A Vanilloid receptor-rela 38.7 41 0.0014 27.9 5.1 188 52-249 9-251 (260)
301 2crb_A Nuclear receptor bindin 38.3 63 0.0022 21.6 4.5 25 433-457 18-42 (97)
302 2w57_A Ferric uptake regulatio 38.2 1.1E+02 0.0038 22.8 6.9 62 34-96 6-68 (150)
303 3bu8_A Telomeric repeat-bindin 37.3 1.6E+02 0.0055 23.6 11.3 119 46-166 18-163 (235)
304 4ets_A Ferric uptake regulatio 37.3 72 0.0025 24.3 5.7 69 27-96 14-85 (162)
305 2o03_A Probable zinc uptake re 37.1 67 0.0023 23.3 5.3 44 16-59 16-59 (131)
306 3f3f_C Nucleoporin NUP85; stru 36.4 1.5E+02 0.005 28.2 8.4 91 9-101 478-570 (570)
307 1wdy_A 2-5A-dependent ribonucl 35.6 1.8E+02 0.0062 24.0 8.9 11 54-64 11-21 (285)
308 2qx5_A Nucleoporin NIC96; mRNA 35.3 3.3E+02 0.011 26.7 17.7 42 155-197 157-198 (661)
309 3eyy_A Putative iron uptake re 35.0 53 0.0018 24.5 4.6 57 3-61 12-68 (145)
310 2ijq_A Hypothetical protein; s 34.8 1.5E+02 0.0051 22.6 7.7 50 304-353 46-103 (161)
311 4gq2_M Nucleoporin NUP120; bet 34.7 2E+02 0.0069 29.8 10.1 48 152-199 899-950 (950)
312 3eu9_A Huntingtin-interacting 34.5 1.7E+02 0.0057 23.4 8.3 18 227-244 181-198 (240)
313 1k1a_A B-cell lymphoma 3-encod 34.5 1.8E+02 0.0061 23.3 8.5 17 57-73 18-34 (241)
314 1bpo_A Protein (clathrin); cla 34.2 2.8E+02 0.0097 25.6 10.3 98 354-453 355-452 (494)
315 3mwm_A ZUR, putative metal upt 34.0 64 0.0022 23.8 4.8 46 50-95 18-63 (139)
316 2d2s_A Exocyst complex compone 33.8 2E+02 0.0067 23.6 9.7 21 332-352 25-45 (235)
317 4gq2_M Nucleoporin NUP120; bet 33.2 3.2E+02 0.011 28.3 11.4 52 331-387 816-867 (950)
318 3ltj_A Alpharep-4; protein eng 33.1 1.7E+02 0.0059 22.7 18.5 175 7-201 25-199 (201)
319 1k1a_A B-cell lymphoma 3-encod 32.8 1.9E+02 0.0065 23.2 9.7 85 17-106 13-102 (241)
320 2ion_A PDCD4, programmed cell 32.5 1.5E+02 0.0052 22.2 6.7 22 190-211 14-35 (152)
321 2nsz_A Programmed cell death p 32.4 1.4E+02 0.0049 21.6 6.8 23 364-386 11-33 (129)
322 2qx5_A Nucleoporin NIC96; mRNA 31.5 3.8E+02 0.013 26.2 19.5 80 191-281 300-382 (661)
323 1wfd_A Hypothetical protein 15 31.5 62 0.0021 21.8 3.9 17 494-510 27-43 (93)
324 2b7e_A PRE-mRNA processing pro 31.0 48 0.0017 20.1 2.9 29 62-90 3-31 (59)
325 2ion_A PDCD4, programmed cell 30.7 99 0.0034 23.3 5.4 24 259-282 13-36 (152)
326 4ets_A Ferric uptake regulatio 30.7 98 0.0034 23.6 5.5 45 295-339 37-83 (162)
327 2fe3_A Peroxide operon regulat 30.7 1.6E+02 0.0056 21.7 7.0 19 162-180 33-51 (145)
328 3hra_A Ankyrin repeat family p 30.4 1.9E+02 0.0064 22.3 7.8 14 21-34 13-26 (201)
329 3ubw_A 14-3-3E, 14-3-3 protein 30.2 2.4E+02 0.0082 23.5 11.1 48 412-459 173-228 (261)
330 2ijq_A Hypothetical protein; s 29.6 1.9E+02 0.0064 22.1 7.8 49 24-72 46-102 (161)
331 3kea_A K1L; tropism, ANK repea 29.5 2.5E+02 0.0086 23.5 10.2 19 192-210 165-183 (285)
332 1mzb_A Ferric uptake regulatio 29.0 88 0.003 22.9 4.8 58 3-61 11-69 (136)
333 3hra_A Ankyrin repeat family p 28.7 98 0.0034 24.1 5.6 15 55-69 12-26 (201)
334 2fu4_A Ferric uptake regulatio 28.2 1.2E+02 0.0042 19.5 6.8 60 35-95 7-67 (83)
335 2xig_A Ferric uptake regulatio 27.7 1.9E+02 0.0065 21.5 7.8 57 141-198 18-74 (150)
336 3t8k_A Uncharacterized protein 27.4 2.1E+02 0.0074 22.1 8.6 63 122-184 42-108 (186)
337 2v6x_A Vacuolar protein sortin 27.3 81 0.0028 20.7 3.9 17 494-510 25-41 (85)
338 2w57_A Ferric uptake regulatio 26.0 1.9E+02 0.0066 21.5 6.3 15 166-180 33-47 (150)
339 2rpa_A Katanin P60 ATPase-cont 25.9 61 0.0021 21.0 2.9 27 484-510 14-40 (78)
340 3ubw_A 14-3-3E, 14-3-3 protein 25.2 3E+02 0.01 23.0 10.5 45 291-335 32-76 (261)
341 3mwm_A ZUR, putative metal upt 25.1 1E+02 0.0036 22.6 4.6 46 15-60 18-63 (139)
342 4a5x_A MITD1, MIT domain-conta 25.1 84 0.0029 20.8 3.6 28 492-519 26-58 (86)
343 2o03_A Probable zinc uptake re 24.8 1.2E+02 0.004 22.0 4.8 48 49-96 14-61 (131)
344 1om2_A Protein (mitochondrial 24.7 1.1E+02 0.0038 20.7 4.1 37 487-525 25-61 (95)
345 3mv2_A Coatomer subunit alpha; 24.7 3.4E+02 0.012 23.5 10.1 132 20-168 124-260 (325)
346 2cpt_A SKD1 protein, vacuolar 24.7 80 0.0027 22.5 3.7 17 494-510 30-46 (117)
347 2cos_A Serine/threonine protei 24.6 80 0.0027 18.6 2.9 19 438-456 28-48 (54)
348 2f6m_A Suppressor protein STP2 24.4 1E+02 0.0035 19.1 3.5 45 12-57 4-48 (65)
349 3kea_A K1L; tropism, ANK repea 24.1 3.2E+02 0.011 22.9 8.3 19 227-245 165-183 (285)
350 3uzd_A 14-3-3 protein gamma; s 22.7 3.3E+02 0.011 22.5 10.2 47 412-458 148-202 (248)
351 3iqu_A 14-3-3 protein sigma; s 22.4 3.2E+02 0.011 22.4 9.5 47 412-458 150-204 (236)
352 3ltm_A Alpha-REP4; protein eng 22.0 2.9E+02 0.0098 21.6 20.0 167 27-213 18-184 (211)
353 3t5v_B Nuclear mRNA export pro 21.9 1.7E+02 0.0058 27.0 6.2 27 48-74 179-205 (455)
354 3ygs_P Procaspase 9; apoptosis 21.7 1.7E+02 0.0058 19.8 4.8 37 59-99 51-87 (97)
355 2zu6_B Programmed cell death p 20.6 4.1E+02 0.014 22.9 10.7 24 118-141 6-29 (307)
356 3fap_B FRAP, FKBP12-rapamycin 20.2 94 0.0032 21.1 3.1 56 403-460 18-74 (94)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-43 Score=352.72 Aligned_cols=490 Identities=10% Similarity=-0.013 Sum_probs=397.4
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 009255 8 PDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLI 87 (539)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (539)
++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 46677888888888888888888888888754 456777788888888888888888888877543 45777888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHH
Q 009255 88 NGWCNAGMLEEAFRLRKEMESL---------------KLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVT 152 (539)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (539)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|+++.+.+.. +...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 8888888888888888753211 11234677888888888888888888888888775322 4455
Q ss_pred HHHHHHHHHhcCCHhHHH--HH-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009255 153 HNIMIKWYCKEGKIDKAC--KI-VRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHT 229 (539)
Q Consensus 153 ~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (539)
+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..++..++..
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 555554443332222111 11 333333333334445666677888999999999999998775 5799999999999
Q ss_pred HhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHH
Q 009255 230 LCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQA 309 (539)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (539)
+.+.|++++|..+|+++.+.+.. +..++..++.++...|++++|..+++++....+ .+..++..++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999987643 778899999999999999999999999987654 3788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 310 IDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILK 389 (539)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 389 (539)
.++|+++.+..+ .+..++..++.++.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 393 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999988643 367899999999999999999999999999875 457889999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009255 390 GKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK----KLGPD--RYTYAAIHTALVESGRLEEAQKFTSIMVETGKIN 463 (539)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 463 (539)
.+ .++.+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..++..++.+|.+.|++++|.++++++++.+
T Consensus 471 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 546 (597)
T 2xpi_A 471 FQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--- 546 (597)
T ss_dssp CC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred CC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---
Confidence 43 37889999999999999999999999999875 55777 7899999999999999999999999999987
Q ss_pred cccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009255 464 HQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIK 529 (539)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 529 (539)
+.+..+|..++.+|...|++++|.+.|+++++ +.|+.......++.++.
T Consensus 547 ---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 547 ---------------TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp ---------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred ---------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 44667999999999999999999999999998 57888777776665553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-40 Score=330.71 Aligned_cols=486 Identities=11% Similarity=0.018 Sum_probs=386.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 009255 22 KKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFR 101 (539)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (539)
..|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3444444444444332 357788999999999999999999999999864 4677888899999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCH
Q 009255 102 LRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEH---------------GIKPNAVTHNIMIKWYCKEGKI 166 (539)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~ 166 (539)
+|+++... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988653 678899999999999999999999999853221 2234578999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH--H-HHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHH
Q 009255 167 DKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFR--M-MDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLL 243 (539)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (539)
++|.++|+++.+.+ +.+...+..+...+...+..+.+.. + +..+...+..+...++..++..|.+.|++++|.+++
T Consensus 217 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 99999999998864 3345556666655544433222211 1 344444444444555666678888999999999999
Q ss_pred HHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009255 244 NSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIP 323 (539)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (539)
+.+.+. +++..++..++..|.+.|++++|.++|+++...++. +..++..++.++.+.|++++|..+++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998876 568999999999999999999999999999987654 78899999999999999999999999998764 34
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLIS 403 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 403 (539)
+..++..++..|.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++...+ +.+..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 78899999999999999999999999998864 3478899999999999999999999999999874 347889999999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC--
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS-- 481 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 481 (539)
+|.+.|++++|.++|+++.+.. +.+..++..++.++.+.|++++|.++++++++.... .+..|+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~p~~~ 515 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK-------------TQSNEKPW 515 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------SCCCSGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc-------------cccchhhH
Confidence 9999999999999999999764 456888999999999999999999999999887210 001266
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhhcc
Q 009255 482 SISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 482 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
..+|..++.+|.+.|++++|.+.++++++. .|+.......++.++...|++++|+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHH
Confidence 569999999999999999999999999985 4755544455555555556698885
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.5e-30 Score=240.89 Aligned_cols=377 Identities=15% Similarity=0.046 Sum_probs=214.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 009255 88 NGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKID 167 (539)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 167 (539)
..+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+. .+.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHH
Confidence 33444555555555555554432 223334444444445555555555555544443 1224444555555555555555
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHh
Q 009255 168 KACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSAS 247 (539)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (539)
+|...|+++.+.. +.+..+|..+..++...|++++|.+. ++.+.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~-----------------------------------~~~al 128 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQA-----------------------------------YVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHH-----------------------------------HHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHH-----------------------------------HHHHH
Confidence 5555555544431 12233444444444444444444444 44444
Q ss_pred hcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHh
Q 009255 248 KRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETT 327 (539)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (539)
+... .+...+..+...+...|++++|.+.|+++....+. +..+|..+...+...|++++|...|+++.+..+. +...
T Consensus 129 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 205 (388)
T 1w3b_A 129 QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDA 205 (388)
T ss_dssp HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHH
Confidence 4321 12334444555555566666666666665554332 4556666666666666666666666666654322 4555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 009255 328 FNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCK 407 (539)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (539)
+..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|...|+++.+.++. ++.+|..++.++..
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 6666666666677777777766666543 224566666677777777777777777776665322 45566777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHH
Q 009255 408 ERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSE 487 (539)
Q Consensus 408 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (539)
.|++++|+..++++.+.. +.+..++..++.++...|++++|.+.++++++.. |.+..++..
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~ 344 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF------------------PEFAAAHSN 344 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC------------------TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------CCcHHHHHH
Confidence 777777777777776542 4456666677777777777777777777776654 233446777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 488 KINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 488 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
++.+|.+.|++++|.+.|+++++ +.|+.......++.++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHH
Confidence 77777777777777777777775 4566554444444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.9e-30 Score=238.91 Aligned_cols=383 Identities=13% Similarity=0.023 Sum_probs=278.8
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 009255 51 LVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGR 130 (539)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (539)
+...+.+.|++++|...++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 456778999999999999999887543 56677888888999999999999999988764 5678899999999999999
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 131 SMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDV 210 (539)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (539)
+++|++.|+++.+.. +.+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998863 3356789999999999999999999999998863 33455677788888888999999999988
Q ss_pred HhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 009255 211 MGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPST 290 (539)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (539)
+.+.. +.+..++..+...+...|++++|...++++.+. ++. +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------------------------------~p~-~~ 203 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----------------------------------DPN-FL 203 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----------------------------------CTT-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------------------CCC-cH
Confidence 87652 223445555555555555555555555555443 222 34
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 009255 291 FTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGL 370 (539)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (539)
..+..+...+...|++++|...++++....+. +..++..+..++...|++++|...++++++.. +.+..++..++.++
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45555555566666666666666665554322 45556666666666677777777777666653 23456677777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 009255 371 CREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQ 450 (539)
Q Consensus 371 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 450 (539)
.+.|++++|...++++.+.. +.+..++..++..+...|++++|+..++++.+.. +.+..++..++.++.+.|++++|.
T Consensus 282 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777663 3466677777777888888888888888877542 334667777778888888888888
Q ss_pred HHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHhhcCC
Q 009255 451 KFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHCSQGR 497 (539)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 497 (539)
+.++++++.. |+. .+|..++.++...|+
T Consensus 360 ~~~~~a~~~~-------------------p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 360 MHYKEAIRIS-------------------PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTC-------------------TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhC-------------------CCCHHHHHhHHHHHHHccC
Confidence 8888887765 443 377777777766553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-29 Score=240.25 Aligned_cols=206 Identities=19% Similarity=0.272 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---------hH
Q 009255 28 EVRDLLSDMKKQGLVPNRT-TYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGM---------LE 97 (539)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 97 (539)
.+..+.+.+.+.+....+. .++.++.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3455666676666655554 5777888888888888888888888888888888888888888876554 57
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 009255 98 EAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNME 177 (539)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 177 (539)
.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhcc
Q 009255 178 ENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCE 233 (539)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (539)
+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.+..|+..|+..++..++..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888877653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-29 Score=239.52 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=182.1
Q ss_pred CCCCCcCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------HhHHHHHHHHHH
Q 009255 3 GFGCLPDN-VTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGW---------LKEAMRVVDLMT 72 (539)
Q Consensus 3 ~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~ 72 (539)
+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++.+. ++.|.++|++|.
T Consensus 18 ~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 18 KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp ------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 34444443 35888999999999999999999999999999999999999999987654 688999999999
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHH
Q 009255 73 QNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVT 152 (539)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (539)
..|..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 98 ~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 009255 153 HNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKA 198 (539)
Q Consensus 153 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (539)
|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..+...
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-27 Score=229.43 Aligned_cols=461 Identities=11% Similarity=0.006 Sum_probs=316.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 009255 10 NVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLING 89 (539)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (539)
...+......+.+.|++++|+..|+++...+ |++.++..++.++.+.|++++|...++.+.+.++. +..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4567777888888899999999998888875 57888888888888889999999888888876543 66788888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 009255 90 WCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKA 169 (539)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 169 (539)
+...|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-.........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 157 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN---- 157 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C----
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC----
Confidence 888888888888888888765 334444444444444333333333333333222211221111110000000000
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhc---cCCHHHHHHHHHHH
Q 009255 170 CKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCC---EKKLDEAYMLLNSA 246 (539)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 246 (539)
.|+.......+..+...... .....+.+...+......+.. .|++++|...++.+
T Consensus 158 ------------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 158 ------------LPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp ------------CCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ------------CchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 11111111100000000000 000001123333333333332 56666666666665
Q ss_pred hh-----cCC--------ccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 009255 247 SK-----RGY--------YLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDML 313 (539)
Q Consensus 247 ~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (539)
.+ ... +.+...+..+...+...|++++|...++++....+. ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55 210 123456777888888999999999999998887544 778888899999999999999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009255 314 NELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAV 393 (539)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 393 (539)
+++....+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.... +.
T Consensus 294 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 99887643 356788888999999999999999999999875 3367788889999999999999999999998873 33
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCcc
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL-GPD----RYTYAAIHTALVE---SGRLEEAQKFTSIMVETGKINHQ 465 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 465 (539)
+...+..++..+...|++++|...++++.+... .++ ..++..++.++.. .|++++|.+.++++++..
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~----- 445 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD----- 445 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-----
Confidence 677899999999999999999999999986421 111 2378889999999 999999999999999987
Q ss_pred cccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 466 VVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
+.+..++..++.+|...|++++|...|+++++ +.|+.......+.
T Consensus 446 -------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 446 -------------PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQAIT 490 (514)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHHHH
T ss_pred -------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHHHHHH
Confidence 34455899999999999999999999999998 5688776555443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.1e-26 Score=222.06 Aligned_cols=440 Identities=10% Similarity=0.008 Sum_probs=283.3
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 46 TTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRF 125 (539)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (539)
..+...+..+.+.|++++|+..|+++.+.+ |+...+..+..++.+.|++++|+..++++.+.+ +.+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345555555666666666666666665543 355555666666666666666666666655543 23344555555555
Q ss_pred hccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 009255 126 FESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAF 205 (539)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (539)
...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+... .
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~------- 149 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA------K------- 149 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh------h-------
Confidence 555566666555555555432 22223333333332222222222222222221111111110000 0
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 009255 206 RMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFR---DEKANRALKLWDEMK 282 (539)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 282 (539)
.........|+.......+..+....... ....+.+...+......+.. .|++++|+..|+++.
T Consensus 150 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 150 ---ERKDKQENLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred ---HHHhhccCCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 00000111222222222111111111000 00001124445555555554 899999999999988
Q ss_pred H-----c--CC------CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHH
Q 009255 283 E-----R--QI------MPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHN 349 (539)
Q Consensus 283 ~-----~--~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (539)
. . .+ +.+..++..+...+...|++++|...++++....+. ...+..+..++...|++++|...++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7 3 11 123567788889999999999999999999987544 7888889999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 009255 350 KMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD 429 (539)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 429 (539)
.+.+.. +.+..++..+..++...|++++|...++++....+. +...+..++..+...|++++|+..++++.+.. +.+
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 999874 446788999999999999999999999999987433 67789999999999999999999999998753 345
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC----hhhHHHHHHHHhh---cCCHHHHH
Q 009255 430 RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS----SISYSEKINEHCS---QGRYKDAL 502 (539)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~ 502 (539)
..++..++.++...|++++|.+.++++++.... .+. ...|..++.++.. .|++++|.
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENK----------------LDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----------------SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc----------------cchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 678888999999999999999999999987622 122 3389999999999 99999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhhcc
Q 009255 503 QIFEETRQKGIAINKSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 503 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
..++++++ ..|+.......++.++...|++++|+
T Consensus 436 ~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 436 NLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 99999998 45777666666676777777788885
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=1.6e-25 Score=219.19 Aligned_cols=440 Identities=11% Similarity=0.037 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 46 TTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRF 125 (539)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (539)
..+..++..+.+.|++++|+..|+.+.+..+. ++..+..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 34555666666666666666666666655432 55566666666666666666666666665543 33455566666666
Q ss_pred hccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHH
Q 009255 126 FESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENG--FSPDCVTYNTLIDANCKAGNMEE 203 (539)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 203 (539)
...|++++|...|+.+ .. .|+. ....+..+...+....|...++.+.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 6666666666666422 21 1111 1112233334444456666666654321 00011111223333444555555
Q ss_pred HHHHHHHHhhCCCCCCHH-hHHHHHHHHhc--------cCCHHHHHHHHHHHhhcCCccCH-------hhHHHHHHHHHc
Q 009255 204 AFRMMDVMGRKGLKMNTI-TLNTILHTLCC--------EKKLDEAYMLLNSASKRGYYLDE-------VSYGTLITGYFR 267 (539)
Q Consensus 204 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 267 (539)
+...+...... .+... ....+...+.. .+++++|...++.+.+.... +. ..+..+...+..
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHh
Confidence 44433322211 11111 12222222221 23667777777777765322 22 245666778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHH
Q 009255 268 DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQF 347 (539)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (539)
.|++++|...++++.... |+...+..+...+...|++++|...++++....+ .+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998874 4578888899999999999999999999988654 3677888999999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC-
Q 009255 348 HNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL- 426 (539)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 426 (539)
++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..++..+...|++++|+..++++.+...
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998864 3367788899999999999999999999999874 33677899999999999999999999999886421
Q ss_pred ----CCCHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHH
Q 009255 427 ----GPDRYTYAAIHTALVES----------GRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEH 492 (539)
Q Consensus 427 ----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 492 (539)
......+...+.++... |++++|...++++++.. +.+..++..++.+|
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------------------p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD------------------PRSEQAKIGLAQLK 472 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHH
Confidence 11112244556777777 99999999999999987 34455999999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009255 493 CSQGRYKDALQIFEETRQKGIAINKSTY 520 (539)
Q Consensus 493 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 520 (539)
...|++++|.+.|+++++. .|+....
T Consensus 473 ~~~g~~~~A~~~~~~al~~--~~~~~~~ 498 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAIL--ARTMDEK 498 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--C--CHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9999999999999999984 5654444
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.1e-24 Score=213.04 Aligned_cols=431 Identities=12% Similarity=0.038 Sum_probs=329.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 009255 10 NVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLING 89 (539)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (539)
...|..+...+.+.|++++|+..|+++.... |.++.++..++.+|.+.|++++|++.|+++.+.++. +...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4578889999999999999999999999986 668899999999999999999999999999987654 77889999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhc
Q 009255 90 WCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHG------IKPNAVTHNIMIKWYCKE 163 (539)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~ 163 (539)
+...|++++|+..|+.+ .. .|+. ....+..+...+....|...++++.... ..|+.. .+..+...
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHh
Confidence 99999999999999744 32 2322 2223445555666788999999886541 223333 33445556
Q ss_pred CCHhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCH-------HhHHHHH
Q 009255 164 GKIDKACKIVRNMEENGFSPDCV-TYNTLIDANCK--------AGNMEEAFRMMDVMGRKGLKMNT-------ITLNTIL 227 (539)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~ 227 (539)
.+.+.+...+...... .+... ....+...+.. .|++++|+.+++++.+.... +. .++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 6666555444332221 12211 22233333222 25789999999999876422 32 2466667
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHH
Q 009255 228 HTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTE 307 (539)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (539)
..+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++....+. +..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHH
Confidence 78889999999999999999874 34778888999999999999999999999887554 6888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009255 308 QAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWI 387 (539)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 387 (539)
+|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.
T Consensus 328 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999887543 56788889999999999999999999999874 4467788999999999999999999999988
Q ss_pred HcCCCC-----ChhhHHHHHHHHHcc----------CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 009255 388 LKGKAV-----DSVTYNTLISSLCKE----------RRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKF 452 (539)
Q Consensus 388 ~~~~~~-----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 452 (539)
...+.. ....+.....++... |++++|+..++++.+.. +.+..++..++.++...|++++|.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 753211 111244556777777 99999999999999763 45578888999999999999999999
Q ss_pred HHHHHHcC
Q 009255 453 TSIMVETG 460 (539)
Q Consensus 453 ~~~~~~~~ 460 (539)
++++++..
T Consensus 485 ~~~al~~~ 492 (537)
T 3fp2_A 485 FEDSAILA 492 (537)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999987
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=9.1e-24 Score=201.72 Aligned_cols=376 Identities=14% Similarity=0.055 Sum_probs=226.0
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
+.+...+..++..+.+.|++++|+.+|+++.... |.+..++..++.++...|++++|...|+.+.+.++. +...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 3455677788888888888888888888888764 557778888888888888888888888888876543 56777888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHhccCCHhHHHHHHHHHHhCCCCCCHH
Q 009255 87 INGWCNAGMLEEAFRLRKEMESLKLLPDV---VTYNTL------------INRFFESGRSMEAFKLIDELDEHGIKPNAV 151 (539)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (539)
+.++.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|+..|+++.+.. +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 888888888888888888887753 2233 444444 334677778888888887777652 33666
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHh
Q 009255 152 THNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLC 231 (539)
Q Consensus 152 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (539)
++..++.+|.+.|++++|...|+++.+.. +.+..++..++..+...|++++|+..|+++.... +.+...+..+...
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~-- 254 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV-- 254 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH--
Confidence 77777777777888888888777776653 3456677777777777788888887777776542 1123333222000
Q ss_pred ccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHcCCCHH
Q 009255 232 CEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPS----TFTYNAMIWGLSQSGKTE 307 (539)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 307 (539)
. .......+...+...|++++|...|+++....+. + ...+..+..++.+.|+++
T Consensus 255 ---------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 255 ---------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp ---------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHH
Confidence 0 0001112244444555555555555555443221 1 224444555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH------------HHHhcC-
Q 009255 308 QAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS------------GLCREG- 374 (539)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g- 374 (539)
+|+..++++.+..+ .+...+..+..+|...|++++|...++++++.. +.+...+..+.. .|...|
T Consensus 313 ~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 55555555544321 234455555555555555555555555555432 113333333331 223333
Q ss_pred ----CHHHHHHHHHH-HHHcCC--CCCh-------hhHHHHHHHHHccCChHHH
Q 009255 375 ----ILEKALKFFRS-WILKGK--AVDS-------VTYNTLISSLCKERRLEDA 414 (539)
Q Consensus 375 ----~~~~A~~~~~~-~~~~~~--~~~~-------~~~~~l~~~~~~~~~~~~A 414 (539)
+.+++.+.+++ .....+ .|+. ..+..+..+|...++.++.
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 45566666665 333211 1121 2566777777777776554
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=8.7e-24 Score=201.88 Aligned_cols=349 Identities=12% Similarity=0.072 Sum_probs=221.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009255 79 DVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIK 158 (539)
Q Consensus 79 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (539)
+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|+..|+++.+.+. .+..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 45566666666666667777766666666542 33555666666666666666666666666665432 24556666666
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCC
Q 009255 159 WYCKEGKIDKACKIVRNMEENGFSPDC---VTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKK 235 (539)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (539)
+|.+.|++++|...|+++.+.. +.+. ..+..++..+... .+......+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 6666666666666666666542 1222 3444443321100 11122334555666
Q ss_pred HHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 009255 236 LDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNE 315 (539)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (539)
+++|...++.+.+... .+...+..+..+|...|++++|+..|+++....+. +..++..++..|...|++++|+..+++
T Consensus 159 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665432 25566666777777777777777777776654332 566677777777777777777777777
Q ss_pred HHHCCCCCCHHhHHHH------------HHHHhcCCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHHHH
Q 009255 316 LLQSGMIPDETTFNTI------------IHGFCSEGQVEKALQFHNKMVEKSFKPD----IVTCNILLSGLCREGILEKA 379 (539)
Q Consensus 316 ~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 379 (539)
+....+. +...+..+ +..+...|++++|...|+.+.+.... + ...+..++.++.+.|++++|
T Consensus 237 ~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHH
Confidence 7654322 23333333 67788888888898888888875321 2 34677788888888999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHH------------HHhcC--
Q 009255 380 LKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTA------------LVESG-- 444 (539)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~------------~~~~g-- 444 (539)
...++++.... +.+...|..++.+|...|++++|...++++.+. .|+ ..++..+..+ +...|
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 99998888763 336778888888888999999999999988864 444 4555555533 33334
Q ss_pred ---CHHHHHHHHHH-HHHcC
Q 009255 445 ---RLEEAQKFTSI-MVETG 460 (539)
Q Consensus 445 ---~~~~A~~~~~~-~~~~~ 460 (539)
+.+++.+.+++ +++..
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHHHhC
Confidence 56777888886 55544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1e-21 Score=181.44 Aligned_cols=332 Identities=13% Similarity=0.077 Sum_probs=241.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009255 149 NAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILH 228 (539)
Q Consensus 149 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (539)
++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777788888888888888888877753 3456677777888888888888888888877653 235566777777
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCc--cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCH
Q 009255 229 TLCCEKKLDEAYMLLNSASKRGYY--LDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKT 306 (539)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (539)
++...|++++|...++.+.+.... .+...+..+...+ ....+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 777777777777777777765320 1222222221110 011223345677788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 307 EQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSW 386 (539)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 386 (539)
++|...++++.+..+ .+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888877643 366777788888888888888888888888764 446778888888888888888888888888
Q ss_pred HHcCCCCChhhHH------------HHHHHHHccCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHHHHH
Q 009255 387 ILKGKAVDSVTYN------------TLISSLCKERRLEDAFGLLSEMEEKKLGPDR----YTYAAIHTALVESGRLEEAQ 450 (539)
Q Consensus 387 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 450 (539)
.+..+. +...+. .++..+...|++++|+..++++.+.. +.+. ..+..++.++...|++++|.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 876322 333333 33667889999999999999998753 2223 23456788999999999999
Q ss_pred HHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009255 451 KFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIK 529 (539)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 529 (539)
+.++++++.. +.+..+|..++.+|...|++++|.+.|+++++ +.|+.......+..+..
T Consensus 293 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQME------------------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 9999999986 34556999999999999999999999999997 67887766655554443
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=1.2e-19 Score=174.45 Aligned_cols=370 Identities=14% Similarity=0.084 Sum_probs=234.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 009255 93 AGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFE----SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCK----EG 164 (539)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 164 (539)
.+++++|+..|++..+.+ +...+..|...|.. .+++++|.++|++..+.| ++..+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444444444444444432 33344444444444 444455555554444432 33344444444444 44
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhc----cCCH
Q 009255 165 KIDKACKIVRNMEENGFSPDCVTYNTLIDANCK----AGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCC----EKKL 236 (539)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 236 (539)
++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 5555555555554432 33344444444444 455555555555555443 34444555555544 5566
Q ss_pred HHHHHHHHHHhhcCCccCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----CCCHHH
Q 009255 237 DEAYMLLNSASKRGYYLDEVSYGTLITGYFR----DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQ----SGKTEQ 308 (539)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 308 (539)
++|...+++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 66666666655543 34455555555554 567777777777766542 45566666666666 788888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHhcC-----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---CHHHHH
Q 009255 309 AIDMLNELLQSGMIPDETTFNTIIHGFCSE-----GQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREG---ILEKAL 380 (539)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 380 (539)
|+..|++..+.+ +...+..+...+... +++++|...|++..+.+ +...+..+..+|...| ++++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 888888877653 455666677777766 89999999999988864 5567777888887766 789999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHH
Q 009255 381 KFFRSWILKGKAVDSVTYNTLISSLCK----ERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE----SGRLEEAQKF 452 (539)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 452 (539)
+.|++..+.+ ++..+..+...|.. .+++++|+..|+++.+.+ +...+..++..+.. .+++++|.++
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998863 67888899999988 899999999999999865 56678888888887 8999999999
Q ss_pred HHHHHHcCCCCcccccCCCCCCCCCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 453 TSIMVETGKINHQVVQPNTSKTPEEIDP-SSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
|+++.+.+.. +| +..+...++..+.. +.+.|.+...+..+
T Consensus 426 ~~~A~~~~~~----------------~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 426 FDTASTNDMN----------------LFGTENRNITEKKLTAK--QLQQAELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHCC----------------HHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCC----------------CcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHH
Confidence 9999998721 12 33366666665553 34555555555554
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=1.5e-19 Score=173.92 Aligned_cols=379 Identities=12% Similarity=0.069 Sum_probs=315.4
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHH
Q 009255 99 AFRLRKEMESLKLLPDVVTYNTLINRFFE----SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCK----EGKIDKAC 170 (539)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 170 (539)
++..++...+. .+...+..+...|.. .+++++|+..|++..+.| ++..+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 35556665553 477788888888887 899999999999998863 67788889999998 89999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhc----cCCHHHHHHH
Q 009255 171 KIVRNMEENGFSPDCVTYNTLIDANCK----AGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCC----EKKLDEAYML 242 (539)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 242 (539)
..|++..+.| +...+..|...|.. .+++++|+..|++....+ +...+..+...|.. .++.++|...
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998864 66777788888888 889999999999998875 56777788888876 7899999999
Q ss_pred HHHHhhcCCccCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHH
Q 009255 243 LNSASKRGYYLDEVSYGTLITGYFR----DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQ----SGKTEQAIDMLN 314 (539)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 314 (539)
|++..+.+ ++..+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998875 67788888888887 899999999999998863 67788888888876 889999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHH
Q 009255 315 ELLQSGMIPDETTFNTIIHGFCS----EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCRE-----GILEKALKFFRS 385 (539)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~ 385 (539)
+..+.+ +...+..+...+.. .+++++|..+|++..+.+ +...+..+..+|... +++++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 988764 45667777777777 899999999999998764 567788888888887 899999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 009255 386 WILKGKAVDSVTYNTLISSLCKER---RLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE----SGRLEEAQKFTSIMVE 458 (539)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 458 (539)
..+.+ +...+..+...|...| ++++|+..|+++.+.+ +...+..++..+.. .+++++|.++++++.+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98864 5677888888888766 8899999999999763 67788889999988 8999999999999998
Q ss_pred cCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 009255 459 TGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCS----QGRYKDALQIFEETRQKGIA-INKSTYMNLMNGL 527 (539)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~l~~~ 527 (539)
.+ +..++..++..|.. .+++++|...|+++.+.+.. |+.......++.+
T Consensus 396 ~~--------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 396 QG--------------------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp TT--------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred CC--------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 64 35688899999998 89999999999999986533 3344444444433
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=8.8e-21 Score=175.20 Aligned_cols=317 Identities=12% Similarity=0.047 Sum_probs=244.7
Q ss_pred ChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 114 DVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLID 193 (539)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (539)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999998863 3468899999999999999999999999998863 446778999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCC--CCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCH
Q 009255 194 ANCKAGNMEEAFRMMDVMGRKGLK--MNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKA 271 (539)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (539)
.+...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999876320 13333333321110 11233455667778888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 009255 272 NRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKM 351 (539)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (539)
++|+..++++....+. +...+..+...+...|++++|...++++....+ .+...+..+...+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888887776543 667777788888888888888888888877643 36677777888888888888888888888
Q ss_pred HhCCCCCCHHhHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHccCChHHHH
Q 009255 352 VEKSFKPDIVTCN------------ILLSGLCREGILEKALKFFRSWILKGKAVDSV----TYNTLISSLCKERRLEDAF 415 (539)
Q Consensus 352 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~ 415 (539)
.+.. +.+...+. .++..+.+.|++++|...++++....+. +.. .+..++.++...|++++|+
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7653 22333332 3366788899999999999999886433 332 3556788899999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 416 GLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..++++.+.. +.+..++..++.++...|++++|.+.++++++..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999998753 4467888899999999999999999999999987
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=4.5e-21 Score=174.95 Aligned_cols=289 Identities=12% Similarity=0.048 Sum_probs=206.9
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 009255 219 NTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIW 298 (539)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (539)
+...+...+..+...|++++|..+++.+.+... .+...+..++..+...|++++|...++++....+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 444555555556666666666666666655532 24445555666667777777777777777765433 5667777777
Q ss_pred HHHcCC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 009255 299 GLSQSG-KTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILE 377 (539)
Q Consensus 299 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 377 (539)
.+...| ++++|...++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+..+|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 777777 788888888877765432 45667777778888888888888888877764 234566666788888888888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHhcCCHHHH
Q 009255 378 KALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK--------LGPDRYTYAAIHTALVESGRLEEA 449 (539)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A 449 (539)
+|...++++.... +.+...+..++..+...|++++|...++++.+.. .+....++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887763 3366778888888888888888888888877531 122346777888888899999999
Q ss_pred HHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Q 009255 450 QKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI- 528 (539)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~- 528 (539)
.+.++++++.. +.+...|..++.+|...|++++|.+.++++++ +.|+.......++.++
T Consensus 256 ~~~~~~a~~~~------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 256 LDYHRQALVLI------------------PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHHHS------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC------------------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHH
Confidence 99999998886 34455888899999999999999999999886 5677766666666555
Q ss_pred hcCC
Q 009255 529 KRRK 532 (539)
Q Consensus 529 ~~~~ 532 (539)
...|
T Consensus 316 ~~~g 319 (330)
T 3hym_B 316 MYIG 319 (330)
T ss_dssp TTTT
T ss_pred HHhC
Confidence 4444
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.8e-19 Score=173.73 Aligned_cols=428 Identities=10% Similarity=0.020 Sum_probs=295.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009255 33 LSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLL 112 (539)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 112 (539)
|++.++.. |-+..+|..++. +.+.|++++|..+|+++.+..+ .+...|..++..+.+.|++++|..+|++.... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55555554 557888988888 4778999999999999998744 36778999999999999999999999999886 3
Q ss_pred CChhhHHHHHHHH-hccCCHhHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHh---------cCCHhHHHHHHHHH
Q 009255 113 PDVVTYNTLINRF-FESGRSMEAFK----LIDELDEH-GIKP-NAVTHNIMIKWYCK---------EGKIDKACKIVRNM 176 (539)
Q Consensus 113 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 176 (539)
|+...|..++... ...|+.+.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777777533 34577776665 66666542 4433 45677777776554 67888888888888
Q ss_pred HHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH------h
Q 009255 177 EENGFSPDC---VTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSA------S 247 (539)
Q Consensus 177 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~ 247 (539)
.+. |.. ..|..........|. ..+..++. ...+++..|..++... .
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHh
Confidence 773 322 223222211100110 00111110 1223344454444431 1
Q ss_pred hcC---CccC--------HhhHHHHHHHHHcc----CCH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc------
Q 009255 248 KRG---YYLD--------EVSYGTLITGYFRD----EKA----NRALKLWDEMKERQIMPSTFTYNAMIWGLSQ------ 302 (539)
Q Consensus 248 ~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 302 (539)
+.. .+|+ ...|...+...... ++. .++..+|++.+...+. ++..|..++..+.+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhh
Confidence 111 1222 12333333322221 222 4677889888876443 77888888888775
Q ss_pred -CCCHH-------HHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhc
Q 009255 303 -SGKTE-------QAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDI-VTCNILLSGLCRE 373 (539)
Q Consensus 303 -~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 373 (539)
.|+++ +|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++++... .+. ..|..++..+.+.
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHh
Confidence 78877 8999999988632333677888888999999999999999999998632 233 5788888888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 009255 374 GILEKALKFFRSWILKGKAVDSVTYNTLISS-LCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKF 452 (539)
Q Consensus 374 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 452 (539)
|++++|.++|++..+.. +.+...|...+.. +...|++++|..+|+++++.. +.+...+..++..+.+.|+.++|+.+
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 99999999999998762 2233344333332 335899999999999998753 34578888899999999999999999
Q ss_pred HHHHHHcCCCCcccccCCCCCCCCCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 453 TSIMVETGKINHQVVQPNTSKTPEEIDPS--SISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
|++++..... +|+ ...|...+......|+.+.+..+++++.+
T Consensus 448 ~~~al~~~~~----------------~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 448 FERVLTSGSL----------------PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHSCCS----------------CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccCC----------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999997632 232 23888889988999999999999999987
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=6.5e-19 Score=171.20 Aligned_cols=424 Identities=10% Similarity=-0.029 Sum_probs=296.9
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
|-|..+|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|..+|+++.... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346778999998 478999999999999999884 7788899999999999999999999999999874 577777777
Q ss_pred HHHH-HhcCChHHHHH----HHHHHHh-CCCC-CChhhHHHHHHHHhc---------cCCHhHHHHHHHHHHhCCCCCCH
Q 009255 87 INGW-CNAGMLEEAFR----LRKEMES-LKLL-PDVVTYNTLINRFFE---------SGRSMEAFKLIDELDEHGIKPNA 150 (539)
Q Consensus 87 ~~~~-~~~g~~~~a~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~ 150 (539)
+... ...|+.+.|.+ +|++... .|.. ++...|...+..... .|+++.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 35677777665 7777654 2433 345677777776554 68899999999999883111112
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------hhCC---CCCC--
Q 009255 151 VTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVM------GRKG---LKMN-- 219 (539)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~-- 219 (539)
..|..........|. ..+.. ++. ...+++..|..++..+ .+.. ++|+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 333332221111111 00111 110 1233455555555442 2211 2333
Q ss_pred ------HHhHHHHHHHHhc----cCCH----HHHHHHHHHHhhcCCccCHhhHHHHHHHHHc-------cCCHH------
Q 009255 220 ------TITLNTILHTLCC----EKKL----DEAYMLLNSASKRGYYLDEVSYGTLITGYFR-------DEKAN------ 272 (539)
Q Consensus 220 ------~~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~------ 272 (539)
...|...+..... .++. ..+..+|+++.... +.++..|..++..+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 1233333322221 1222 36677888887763 3367788888777775 68876
Q ss_pred -HHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhcCCCHHHHHHHHHH
Q 009255 273 -RALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDE-TTFNTIIHGFCSEGQVEKALQFHNK 350 (539)
Q Consensus 273 -~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (539)
+|..+|++....-.+.+...|..++..+.+.|++++|..+|+++.+..+. +. ..|...+..+.+.|+++.|..+|++
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999999886322336888999999999999999999999999985322 33 4788888888889999999999999
Q ss_pred HHhCCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCC-CCC
Q 009255 351 MVEKSFKPDIVTCNILLSG-LCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK-LGP 428 (539)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 428 (539)
..+.. +.+...+...+.. +...|++++|..+|++.++.. +.++..|..++..+...|+.++|..+|++++..+ ..|
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 99863 2234444333332 346899999999999998873 3367889999999999999999999999999763 233
Q ss_pred C--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 429 D--RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 429 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+ ...|...+......|+.+.+.++..++.+..
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 3467777788888999999999999999876
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.2e-20 Score=170.33 Aligned_cols=293 Identities=14% Similarity=0.039 Sum_probs=198.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHH
Q 009255 183 PDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLI 262 (539)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (539)
.+...+..++..+...|++++|+++++++.+.. +.+...+..++.++...|++++|...++.+.+... .+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 344455555555555666666666666655442 22334444455555566666666666666555432 2455566666
Q ss_pred HHHHccC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCH
Q 009255 263 TGYFRDE-KANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQV 341 (539)
Q Consensus 263 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (539)
..+...| ++++|...|+++....+. +...|..+...+...|++++|...++++.+..+. +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 6677777 777777777777665433 4566777777777777888888877777765433 445566677777888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------CCChhhHHHHHHHHHccCChHH
Q 009255 342 EKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGK--------AVDSVTYNTLISSLCKERRLED 413 (539)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~ 413 (539)
++|...++++.+.. +.+..++..+..++...|++++|...++++..... +....++..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888887764 34677778888888888888888888888776421 3345678888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHH-
Q 009255 414 AFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEH- 492 (539)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 492 (539)
|+..++++.+.. +.+..++..++.++...|++++|.+.++++++.. |.+...+..++.++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR------------------RDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC------------------SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC------------------CCchHHHHHHHHHHH
Confidence 888888888653 3456677788888888889999988888888776 33445788888877
Q ss_pred hhcCCHH
Q 009255 493 CSQGRYK 499 (539)
Q Consensus 493 ~~~g~~~ 499 (539)
...|+.+
T Consensus 316 ~~~g~~~ 322 (330)
T 3hym_B 316 MYIGDSE 322 (330)
T ss_dssp TTTTC--
T ss_pred HHhCchh
Confidence 4556543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2.4e-20 Score=172.93 Aligned_cols=276 Identities=14% Similarity=0.008 Sum_probs=181.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 009255 223 LNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQ 302 (539)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (539)
+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|+..|+++....+. +..++..+...+..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 33444444444444444444444444321 13344444445555555555555555555444322 44455555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHH---------------HHHHHHhcCCCHHHHHHHHHHHHhCCCCC-CHHhHHHH
Q 009255 303 SGKTEQAIDMLNELLQSGMIPDETTFN---------------TIIHGFCSEGQVEKALQFHNKMVEKSFKP-DIVTCNIL 366 (539)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 366 (539)
.|++++|...++++....+.. ...+. ..+..+...|++++|...++++.+..... +..++..+
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 555555555555555432221 11111 01223337899999999999998864221 57889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 009255 367 LSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRL 446 (539)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (539)
..+|...|++++|...++++.... +.+...|..++.++...|++++|+..++++.+.. +.+..++..++.++...|++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCH
Confidence 999999999999999999998873 3367889999999999999999999999998753 44578888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 447 EEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 447 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
++|.+.++++++........ .....+....+|..++.+|...|++++|..++++.++
T Consensus 302 ~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGP-------RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHHTC-------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCCCCc-------cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 99999999999876220000 0000011145999999999999999999999886654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=7.9e-20 Score=169.43 Aligned_cols=282 Identities=11% Similarity=0.010 Sum_probs=218.9
Q ss_pred hccCCHHHHHH-HHHHHhhcCCc---cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCH
Q 009255 231 CCEKKLDEAYM-LLNSASKRGYY---LDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKT 306 (539)
Q Consensus 231 ~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (539)
...|+++.|.. .+++....... .+...+..+...+...|++++|...|+++....+. +..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCH
Confidence 34577888887 77765544221 13456788899999999999999999999987654 788899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHH----------------HHHHHH
Q 009255 307 EQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCN----------------ILLSGL 370 (539)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~ 370 (539)
++|...++++.+..+ .+..++..+...+...|++++|...++++.+.... +...+. .+...+
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998754 37788999999999999999999999999987432 222222 233344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 009255 371 CREGILEKALKFFRSWILKGKAV-DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEA 449 (539)
Q Consensus 371 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 449 (539)
..|++++|...++++....+.. +..++..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999999874322 57789999999999999999999999998753 44578889999999999999999
Q ss_pred HHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH------------
Q 009255 450 QKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINK------------ 517 (539)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------ 517 (539)
++.++++++.. +.+..++..++.+|...|++++|...|+++++. .|+.
T Consensus 271 ~~~~~~al~~~------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 271 VAAYRRALELQ------------------PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCH
T ss_pred HHHHHHHHHhC------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhh
Confidence 99999999987 344559999999999999999999999999873 3433
Q ss_pred HHHHHHHHHHHhcCCchhhcc
Q 009255 518 STYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 518 ~~~~~~l~~~~~~~~~~~~A~ 538 (539)
.+|..+ +.++...|++++|.
T Consensus 331 ~~~~~l-~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 331 NIWSTL-RLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHH-HHHHHHHTCGGGHH
T ss_pred HHHHHH-HHHHHHhCChHhHH
Confidence 445444 44444445577763
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.7e-16 Score=159.64 Aligned_cols=429 Identities=13% Similarity=0.128 Sum_probs=293.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQG--LVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLING 89 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (539)
--...+++|...|++.+|++++++..-.+ +.-+....+.++.+..+. +..+..++.+..... + ...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 33556677888888888888888887432 113445566666666666 456666666555421 1 3346677
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 009255 90 WCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKA 169 (539)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 169 (539)
+...|.+++|..+|++... .....+.++. ..+++++|.+++++. -++.+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 7788888999888888631 2222233322 667888888888765 2577888899999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 009255 170 CKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKR 249 (539)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (539)
.+.|.+. .|...|..++.++.+.|++++|+++|....+.. +++.....++.+|++.+++++..... +
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9988653 467778888999999999999999998877654 23333345788888888877544332 2
Q ss_pred CCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 009255 250 GYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFN 329 (539)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (539)
.++...+..+...|...|++++|..+|..+ ..|..++.++.+.|+++.|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 224556667888889999999999999874 37888899999999999999998876 2567888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-
Q 009255 330 TIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE- 408 (539)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 408 (539)
.+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-+...|..+...|.+.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 8888888889988888766542 3366777889999999999999999998887664 33555777777777653
Q ss_pred -CChHHHHHHHHHHHhCCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC
Q 009255 409 -RRLEDAFGLLSEMEEKKLGP------DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS 481 (539)
Q Consensus 409 -~~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (539)
++.-++.++|..-. +++| +...|..+.-.|.+.|+++.|....-.-...-.. ++.+.. --....+
T Consensus 1329 peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~-~~~Fk~-----~i~kv~n 1400 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK-EGQFKD-----IITKVAN 1400 (1630)
T ss_pred HHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh-hHHHHH-----Hhccccc
Confidence 34555555555433 3444 3456778888899999999988322111100000 000000 0000245
Q ss_pred hhhHHHHHHHHhhcC---------------CHHHHHHHHH
Q 009255 482 SISYSEKINEHCSQG---------------RYKDALQIFE 506 (539)
Q Consensus 482 ~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 506 (539)
...|...+..|...+ +++.+.+++.
T Consensus 1401 ~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 667777777777666 6777766666
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=5.5e-20 Score=170.21 Aligned_cols=278 Identities=11% Similarity=-0.029 Sum_probs=198.6
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 009255 221 ITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGL 300 (539)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (539)
..+......+...|++++|...++.+.+... .+...+..+...|...|++++|+..|+++....+. +..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 3455566666666666666666666665532 25566777777777777777777777777765433 566777777777
Q ss_pred HcCCCHHHHHHHHHHHHHCCCC---------CCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHH
Q 009255 301 SQSGKTEQAIDMLNELLQSGMI---------PDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFK-PDIVTCNILLSGL 370 (539)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 370 (539)
...|++++|...++++.+..+. .....+..+...+...|++++|...++++.+.... ++..++..+..+|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7788888888888777664211 01223344577888999999999999999986422 1688999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 009255 371 CREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQ 450 (539)
Q Consensus 371 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 450 (539)
...|++++|...++++.+.. +.+..+|..++.+|...|++++|+..++++.+.. +.+..++..++.++...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999874 3378899999999999999999999999999753 445788899999999999999999
Q ss_pred HHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 009255 451 KFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEET 508 (539)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 508 (539)
+.++++++........ ........+...|..++.++...|+.+.|....++.
T Consensus 302 ~~~~~al~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQ------QQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCC------cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999876220000 000000012458999999999999999998887764
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.8e-18 Score=163.76 Aligned_cols=393 Identities=13% Similarity=-0.007 Sum_probs=228.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhC-----
Q 009255 78 PDVWTYNMLINGWCNAGMLEEAFRLRKEMESL--------KLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEH----- 144 (539)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 144 (539)
.....|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888888888888888876542 11223456777888888888888888888776542
Q ss_pred C--CCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCC
Q 009255 145 G--IKPNAVTHNIMIKWYCKE--GKIDKACKIVRNMEENGFSPDCVTYNTLIDA---NCKAGNMEEAFRMMDVMGRKGLK 217 (539)
Q Consensus 145 ~--~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 217 (539)
+ ......++..+..++... +++++|.+.|++..+.. +.++..+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 111344555555555443 45778888888777653 2234444444433 234466677777777766543 2
Q ss_pred CCHHhHHHHHHHHh----ccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhH
Q 009255 218 MNTITLNTILHTLC----CEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTY 293 (539)
Q Consensus 218 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (539)
.+..++..+...+. ..++.++|.+.++++..... .+...+..+...|...|++++|+..+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 24444444443333 34566677777777666542 25566667777777777777777777777765443 45555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 009255 294 NAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCRE 373 (539)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (539)
..+..+|...+.. ..... ...... .....+.++.|...++...+.. +.+..++..+..+|...
T Consensus 285 ~~lg~~y~~~~~~---------~~~~~-~~~~~~------~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQ---------VMNLR-ENGMYG------KRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHH---------HHHC-------C------HHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---------hhhHH-HHHHHH------HHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 5555554321110 00000 000000 0111234677888888887764 34667788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChh--hHHHHHH-HHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 009255 374 GILEKALKFFRSWILKGKAVDSV--TYNTLIS-SLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQ 450 (539)
Q Consensus 374 g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 450 (539)
|++++|+..|++++.....+... .+..+.. .....|++++|+..|+++++. .|+..... +....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHH
Confidence 99999999999998864332221 2333333 335778999999999999864 45532221 2234556
Q ss_pred HHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 009255 451 KFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKG-IAINKSTY 520 (539)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~ 520 (539)
+++++.++.+ |.+..+|..++.+|...|++++|++.|+++++.+ ..|+..+|
T Consensus 417 ~~~~~~l~~~------------------p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 417 KIAKMRLSKN------------------GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHC------------------C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 7777888876 4455699999999999999999999999999843 33444433
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=4.9e-16 Score=156.43 Aligned_cols=389 Identities=13% Similarity=0.108 Sum_probs=293.3
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 009255 43 PNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKS--LPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNT 120 (539)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (539)
.++.-....+++|...|.+.+|+++++++.-.+. ..+....+.++....+. +..+..++..+.... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3555567788899999999999999999985422 12345556677666666 556666666665421 1 334
Q ss_pred HHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 009255 121 LINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGN 200 (539)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (539)
+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+..++.+.|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 77888899999999999999631 2222333332 778999999998865 257789999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 009255 201 MEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDE 280 (539)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (539)
+++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++.....++.+|.+.+++++....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---
Confidence 99999999763 377888999999999999999999999888764 3334455689999999988854433
Q ss_pred HHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 009255 281 MKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDI 360 (539)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (539)
+. .++...|..+...|...|++++|..+|..+ ..|..++..+.+.|+++.|.+.+++. .+.
T Consensus 1190 -I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A 1190 -IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred -Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence 22 246677778999999999999999999875 37889999999999999999999987 367
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTA 439 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 439 (539)
.+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+.. .+. ...|..++.+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiL 1323 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHH
Confidence 89999999999999999999877643 237777889999999999999999999988844 443 3455556555
Q ss_pred HHh--cCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 009255 440 LVE--SGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQ 503 (539)
Q Consensus 440 ~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 503 (539)
+.+ -++.-++.+.|..-........ .--+...|..+.-.|.+.|+++.|..
T Consensus 1324 yaKy~peklmEhlk~f~~rini~k~~r-------------~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVNIPKVLR-------------AAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcccchHhH-------------HHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 554 4556666666665444320000 00134489999999999999999984
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1e-19 Score=168.31 Aligned_cols=235 Identities=10% Similarity=0.016 Sum_probs=196.8
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 009255 254 DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIH 333 (539)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (539)
+...+..+...+.+.|++++|+..|+++....+. +..++..+...+...|++++|+..|+++.+..+ .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 4456888899999999999999999999987654 788999999999999999999999999998753 36788999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCC----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHH
Q 009255 334 GFCSEGQVEKALQFHNKMVEKSFKPD----------IVTCNILLSGLCREGILEKALKFFRSWILKGKA-VDSVTYNTLI 402 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 402 (539)
++...|++++|...++++.+... .+ ...+..+..++...|++++|...++++....+. +++.++..++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999987531 11 223334578899999999999999999987432 1678899999
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh
Q 009255 403 SSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS 482 (539)
Q Consensus 403 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (539)
..+...|++++|+..++++.+.. +.+..++..++.++...|++++|++.++++++.. +.+.
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------p~~~ 281 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ------------------PGFI 281 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------CCch
Confidence 99999999999999999999763 4567889999999999999999999999999987 3345
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 483 ISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 483 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.+|..++.+|...|++++|...|+++++
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5999999999999999999999999987
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.7e-17 Score=159.32 Aligned_cols=388 Identities=12% Similarity=-0.033 Sum_probs=251.1
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----C---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---
Q 009255 42 VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQN-----K---SLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLK--- 110 (539)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 110 (539)
+.....|+.|...+...|++++|++.|++..+. + ......+|..+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567999999999999999999999987542 1 11245678899999999999999999999876521
Q ss_pred ---C-CCChhhHHHHHHHHhc--cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHhHHHHHHHHHHHcCC
Q 009255 111 ---L-LPDVVTYNTLINRFFE--SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKW---YCKEGKIDKACKIVRNMEENGF 181 (539)
Q Consensus 111 ---~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~ 181 (539)
. .....++..+..++.. .+++++|++.|++..+... .++..+..+..+ +...++.++|.+.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 0 1124556666555554 4579999999999988643 255566555554 345678889999999988763
Q ss_pred CCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhh
Q 009255 182 SPDCVTYNTLIDANCK----AGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVS 257 (539)
Q Consensus 182 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (539)
+.+..++..+...+.. .+++++|.+.+++..... +.+..++..+...+...|++++|...++++.+.... +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3455566666555543 467889999999987764 447788899999999999999999999999887433 5666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 009255 258 YGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCS 337 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (539)
+..+...|...+... .... ...........+..+.|...++++....+. +...+..+...+..
T Consensus 284 ~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHH
Confidence 776766654321111 1100 000001111123467788888887776433 55677788889999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 009255 338 EGQVEKALQFHNKMVEKSFKPDIV--TCNILLS-GLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDA 414 (539)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 414 (539)
.|++++|...|+++++....+... .+..+.. .....|++++|+..|++.+.. .|+...... ....+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHH
Confidence 999999999999988865333221 2233332 234678999999999998876 333322221 22344
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009255 415 FGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKI 462 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 462 (539)
..++++.+..+ +.+..++..++.++...|++++|++.|+++++.+..
T Consensus 416 ~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 416 QKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 55666666543 456778889999999999999999999999998733
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=1.9e-17 Score=149.22 Aligned_cols=347 Identities=13% Similarity=0.108 Sum_probs=146.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 009255 22 KKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFR 101 (539)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (539)
+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677999999998882 3358899999999999999999999653 466688888999989999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 009255 102 LRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGF 181 (539)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 181 (539)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777663 4567778889999999999988887774 367778999999999999999999999866
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHH
Q 009255 182 SPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTL 261 (539)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (539)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+ ...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 36888999999999999999999887 26788999999999999999985544432 2344455568
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCC------CHHhHHHHHHH
Q 009255 262 ITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQS-GMIP------DETTFNTIIHG 334 (539)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 334 (539)
+..|.+.|.+++|+.+++..+... +.....|+.+.-+|++- ++++..+.++..... .++| +...|..+...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 888888899999988888887664 23566777777666654 344444444332221 1111 23456666666
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 009255 335 FCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDA 414 (539)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 414 (539)
|...++++.|.. .|.+. +++..-...+.....+-.+.+--.+...=.+.. .+...+.|+.++...=|.+++
T Consensus 292 y~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~ 362 (449)
T 1b89_A 292 YDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRA 362 (449)
T ss_dssp HHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHH
T ss_pred HHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHH
Confidence 777777776665 23332 122222222233333444433322222222222 344455555555555555555
Q ss_pred HHHHHH
Q 009255 415 FGLLSE 420 (539)
Q Consensus 415 ~~~~~~ 420 (539)
..++++
T Consensus 363 v~~~~~ 368 (449)
T 1b89_A 363 VNYFSK 368 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1.1e-18 Score=158.72 Aligned_cols=277 Identities=11% Similarity=-0.035 Sum_probs=184.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHH
Q 009255 187 TYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYF 266 (539)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (539)
.+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++.+.+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------- 84 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML----------------- 84 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------
Confidence 44455555666666666666666655432 224444444555555555555555555554443
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHH-------------H-H
Q 009255 267 RDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNT-------------I-I 332 (539)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-~ 332 (539)
.+. +..++..+...+...|++++|...++++....+. +...+.. + .
T Consensus 85 ------------------~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 85 ------------------DPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp ------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------
T ss_pred ------------------CcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHH
Confidence 221 3344444444455555555555555554443211 1111111 1 2
Q ss_pred H-HHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 009255 333 H-GFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRL 411 (539)
Q Consensus 333 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 411 (539)
. .+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++.... +.+...+..++..+...|++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 2 3677889999999999998864 3478889999999999999999999999998874 33677899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHH
Q 009255 412 EDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINE 491 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 491 (539)
++|+..++++.+.. +.+..++..++.++...|++++|.+.++++++.......... ......+...|..++.+
T Consensus 223 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 223 QEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG------EASREATRSMWDFFRML 295 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----------CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc------cchhhcCHHHHHHHHHH
Confidence 99999999998753 445778889999999999999999999999988611000000 00000034589999999
Q ss_pred HhhcCCHHHHHHHHHHHHH
Q 009255 492 HCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 492 ~~~~g~~~~A~~~~~~~~~ 510 (539)
+...|++++|...+++.++
T Consensus 296 ~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 9999999999999987654
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=3.6e-18 Score=151.13 Aligned_cols=258 Identities=11% Similarity=0.075 Sum_probs=165.9
Q ss_pred ccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 009255 232 CEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAID 311 (539)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (539)
..|++..|+...+.+..............+..+|...|+++.|+..++. ..+|+..++..+...+...++.++|++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3455555555555443321111112334455666666666666655533 123455666667777777777777777
Q ss_pred HHHHHHHCCCCC-CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 312 MLNELLQSGMIP-DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKG 390 (539)
Q Consensus 312 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 390 (539)
.++++...+..| +...+..+...+...|++++|...+++ +.+...+..++.++.+.|++++|.+.++++....
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 777776655333 344555566777777777777777766 3466777777777888888888888888877763
Q ss_pred CCCChhhH---HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc
Q 009255 391 KAVDSVTY---NTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVV 467 (539)
Q Consensus 391 ~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 467 (539)
|+.... ..++..+...|++++|+.+|+++.+. .+.+...+..++.++.+.|++++|.+.++++++.+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~------- 230 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD------- 230 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 333211 12223344557788888888888765 35566777778888888888888888888888876
Q ss_pred cCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHH-HHHHHHHHHHcCCCCCHHHHHH
Q 009255 468 QPNTSKTPEEIDPSSISYSEKINEHCSQGRYKD-ALQIFEETRQKGIAINKSTYMN 522 (539)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~ 522 (539)
|.+..++.+++.++...|++++ +.++++++++ +.|+.+....
T Consensus 231 -----------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d 273 (291)
T 3mkr_A 231 -----------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKE 273 (291)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHH
Confidence 2344478888888888888765 4677788776 4677665544
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=3.4e-18 Score=155.53 Aligned_cols=260 Identities=9% Similarity=-0.023 Sum_probs=212.8
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 009255 254 DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIH 333 (539)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (539)
+...+..+...+...|++++|..+|+++....+. +...+..+...+...|++++|...++++.+..+ .+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 3445677788899999999999999999887554 778889999999999999999999999988743 36778889999
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 009255 334 GFCSEGQVEKALQFHNKMVEKSFKPDIVTCNIL--------------LS-GLCREGILEKALKFFRSWILKGKAVDSVTY 398 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 398 (539)
.+...|++++|...++++.+... .+...+..+ .. .+...|++++|...++++....+ .+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHH
Confidence 99999999999999999998642 233334333 33 36778999999999999998743 377889
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCC
Q 009255 399 NTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEI 478 (539)
Q Consensus 399 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (539)
..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|.+.++++++..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------ 236 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN------------------ 236 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------
Confidence 999999999999999999999998763 4457888899999999999999999999999987
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC------------HHHHHHHHHHHHhcCCchhhcc
Q 009255 479 DPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAIN------------KSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 479 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
+.+...|..++.+|...|++++|.+.++++++ ..|+ .......++.++...|+.++|.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 34455999999999999999999999999997 3566 5555555665666666688774
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=4.3e-18 Score=153.34 Aligned_cols=282 Identities=13% Similarity=0.146 Sum_probs=99.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 009255 92 NAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACK 171 (539)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 171 (539)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455555555555552 1235555555555566666665555431 344455555555555666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Q 009255 172 IVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGY 251 (539)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (539)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55544442 2334555556666666666665555552 234456666666666666666666666544
Q ss_pred ccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 009255 252 YLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTI 331 (539)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (539)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 24666666666667777766666665 1566677777777777777776443332 22233344456
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHHHHHH
Q 009255 332 IHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCRE--GILEKALKFFRSWILKGKAV------DSVTYNTLIS 403 (539)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~ 403 (539)
+..|.+.|.+++|..+++..+... +-...+|+.+.-+|++- ++..+.++.|..-+ +++| +...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 666777777777777777766554 34556666666666554 23333333332211 1121 4556777777
Q ss_pred HHHccCChHHHHHH
Q 009255 404 SLCKERRLEDAFGL 417 (539)
Q Consensus 404 ~~~~~~~~~~A~~~ 417 (539)
.|.+.++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 77777777777663
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.5e-17 Score=145.74 Aligned_cols=252 Identities=11% Similarity=0.041 Sum_probs=158.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHH
Q 009255 195 NCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRA 274 (539)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 274 (539)
....|++..|+..++................+.++|...|+++.|...++. ..+|+...+..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666665543321111122334455666666666666654432 1233455566666666677777777
Q ss_pred HHHHHHHHHcCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009255 275 LKLWDEMKERQIMP-STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVE 353 (539)
Q Consensus 275 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (539)
++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++.+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777766654323 445555666677777777777777765 34566677777777777777777777777776
Q ss_pred CCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 009255 354 KSFKPDIVT---CNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR 430 (539)
Q Consensus 354 ~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 430 (539)
.. |+... ...++..+...|++++|..+|+++.+. .+.++..++.++.++...|++++|...++++++.. +.+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 53 33211 112233344457788888888887776 34467777778888888888888888888877653 3456
Q ss_pred hhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 009255 431 YTYAAIHTALVESGRLEE-AQKFTSIMVETG 460 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 460 (539)
.++..++.++...|+.++ +.++++++++.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 677777777777777765 567777777776
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.6e-17 Score=144.10 Aligned_cols=241 Identities=16% Similarity=0.149 Sum_probs=193.7
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--CC----HHhH
Q 009255 255 EVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMI--PD----ETTF 328 (539)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 328 (539)
...+..+...+...|++++|+..|+++.... .+...+..+..++...|++++|...++++.+..+. ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456677778888888888888888887776 57788888888888888888888888887764321 12 4677
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 009255 329 NTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE 408 (539)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (539)
..+...+...|++++|...++++.+.. |+. ..+...|++++|...++++....+ .+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 888888899999999999999988753 443 346667889999999999888632 2566788899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHH
Q 009255 409 RRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEK 488 (539)
Q Consensus 409 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 488 (539)
|++++|+..++++.+.. +.+..++..++.++...|++++|.+.++++++.. +.+...|..+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~l 213 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD------------------PNFVRAYIRK 213 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------------------HHHHHHHHHH
Confidence 99999999999998764 4567888899999999999999999999999987 3445599999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHH
Q 009255 489 INEHCSQGRYKDALQIFEETRQKG----IAINKSTYMNLMNG 526 (539)
Q Consensus 489 ~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~~l~~ 526 (539)
+.+|...|++++|...++++++.. ..|+.......+..
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999999999999999998732 12887776666554
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=3.8e-17 Score=138.25 Aligned_cols=200 Identities=14% Similarity=0.044 Sum_probs=147.4
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 009255 288 PSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILL 367 (539)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (539)
++...+..+...+...|++++|+..|+++.+..+. +...+..+..++...|++++|...++++++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45566677777777777777777777777765432 56667777777777777888877777777664 33566777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 009255 368 SGLCRE-----------GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAI 436 (539)
Q Consensus 368 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 436 (539)
.++... |++++|+..+++.++..+. +...+..+..++...|++++|+..|+++++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 9999999999999987433 67788999999999999999999999999876 678888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+.++...|++++|++.++++++.. |.+...+..++.++...|++++|++.+++...
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA------------------PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999987 33445899999999999999999999988753
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=7.3e-17 Score=152.51 Aligned_cols=346 Identities=12% Similarity=0.033 Sum_probs=160.2
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 009255 51 LVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML---EEAFRLRKEMESLKLLPDVVTYNTLINRFFE 127 (539)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (539)
+...+.+.|++++|.++|+...+.| +...+..+...|...|+. ++|+..|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455556666666666666665543 233344444555555555 5666666665532 34444444443333
Q ss_pred cC-----CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 009255 128 SG-----RSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKID---KACKIVRNMEENGFSPDCVTYNTLIDANCKAG 199 (539)
Q Consensus 128 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (539)
.+ ++++|+..|++..+.|.. ..+..|...|...+..+ ++.+.+....+.| ++..+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 33 455666666666554322 24444555554443322 2233333333222 2333444444444444
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccC---CHHHHHH
Q 009255 200 NMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDE---KANRALK 276 (539)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~ 276 (539)
.++++.. .+..++...... ++..+..|...|...| +.++|++
T Consensus 156 ~~~~~~~-------------------------------~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 156 TYDQHLD-------------------------------DVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp CGGGGHH-------------------------------HHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcccCHH-------------------------------HHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 3222222 222222222211 2224444555555555 5555555
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH-H--hcCCCHHHHHHHHH
Q 009255 277 LWDEMKERQIMPSTFTYNAMIWGLSQS----GKTEQAIDMLNELLQSGMIPDETTFNTIIHG-F--CSEGQVEKALQFHN 349 (539)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~ 349 (539)
.|++....+.. +...+..+...|... +++++|+..|++.. . -++..+..+... + ...+++++|..+|+
T Consensus 201 ~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 55555554432 333334444444333 46666666666655 2 233344444444 2 34566666666666
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHH
Q 009255 350 KMVEKSFKPDIVTCNILLSGLCREG-----ILEKALKFFRSWILKGKAVDSVTYNTLISSLCK----ERRLEDAFGLLSE 420 (539)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~ 420 (539)
+..+.| +...+..+..+|. .| ++++|...|++.. . -++..+..|...|.. ..++++|...|++
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 666654 4555555665555 33 6677777766655 2 255556666665554 3366777777777
Q ss_pred HHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 009255 421 MEEKKLGPDRYTYAAIHTALVE----SGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 460 (539)
..+.| +......++..|.. ..+.++|..+++++.+.+
T Consensus 348 Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 348 AARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 66554 22334455555543 346777777777777665
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=2.4e-16 Score=148.92 Aligned_cols=386 Identities=14% Similarity=0.080 Sum_probs=211.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH---hHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 14 NTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWL---KEAMRVVDLMTQNKSLPDVWTYNMLINGW 90 (539)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (539)
..+...+.+.|++++|..+|++..+.| ++.++..+...|...|+. ++|..+|++..+. ++..+..+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 346778889999999999999998876 455666777778888888 8999999999864 556677777756
Q ss_pred HhcC-----ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009255 91 CNAG-----MLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSM---EAFKLIDELDEHGIKPNAVTHNIMIKWYCK 162 (539)
Q Consensus 91 ~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (539)
...| ++++|+..|++..+.| +...+..|...|...+..+ .+.+.+......| ++.....+...|..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 5555 7889999999999865 3347777887777665543 4555555555443 45567778888888
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhcc----CC
Q 009255 163 EGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAG---NMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCE----KK 235 (539)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 235 (539)
.+.++++.+....+.+.-...++..+..|...|...| ++++|++.|++....|.. +...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCC
Confidence 8866655554333332212334447888888888888 888999999888887633 454445555555443 56
Q ss_pred HHHHHHHHHHHhhcCCccCHhhHHHHHHH-H--HccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 009255 236 LDEAYMLLNSASKRGYYLDEVSYGTLITG-Y--FRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDM 312 (539)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (539)
.++|..+|+... .| ++..+..|... | ...+++++|+..|++..+.+ +...+..+...|. .|.
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~------- 297 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGK------- 297 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCS-------
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCC-------
Confidence 666666666665 22 34444444444 2 23455555555555554432 3334444444433 220
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 009255 313 LNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR----EGILEKALKFFRSWIL 388 (539)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 388 (539)
....++++|..+|++.. . .+......+..+|.. ..++++|...|++..+
T Consensus 298 -----------------------g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 298 -----------------------WVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp -----------------------SSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred -----------------------CCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 00115555555555554 2 244445555555544 2356666666666655
Q ss_pred cCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 389 KGKAVDSVTYNTLISSLCK----ERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
.| ++.....|...|.. ..++.+|...|+.+.+.| .++.......+......++..+|.++.++..+.
T Consensus 351 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 351 NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 43 33444555555543 346666666666666554 222222222222222333455566666555544
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=1.4e-16 Score=140.57 Aligned_cols=254 Identities=11% Similarity=0.050 Sum_probs=198.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHhHHHHH
Q 009255 255 EVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPD--ETTFNTII 332 (539)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 332 (539)
+.........+...|++++|+..|+++.+..+. +...+..+...+...|++++|+..++++......++ ...+..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 344556677788889999999999988887543 566888888899999999999999999887432222 23478888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH
Q 009255 333 HGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLE 412 (539)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 412 (539)
..+...|++++|...++++.+.. +.+..++..+..+|...|++++|...+++..... +.+...|..++..+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998864 3467889999999999999999999999988873 336677888883444556999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC------hh
Q 009255 413 DAFGLLSEMEEKKLGPDRYTYAAIHTALVESGR---LEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS------SI 483 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 483 (539)
+|+..++++.+.. +.+...+..++.++...|+ +++|...++++++.... .|+ ..
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~ 222 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP----------------GGAKYKDELIE 222 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG----------------GGGGGHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc----------------ccccchHHHHH
Confidence 9999999999753 3446777888888888888 88899999999886422 133 14
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKR 530 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 530 (539)
+|..++..|...|++++|.+.++++++ +.|++......+......
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHhhhhhcc
Confidence 788899999999999999999999998 579888777776655443
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.1e-16 Score=135.27 Aligned_cols=200 Identities=16% Similarity=0.100 Sum_probs=151.4
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
|++...+..+...+.+.|++++|+..|++.++.. |.++..+..+..++.+.|++++|+..|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 6778888899999999999999999999999876 567888999999999999999999999999887544 67788888
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 009255 87 INGWCNA-----------GMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNI 155 (539)
Q Consensus 87 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (539)
..++... |++++|+..|++..+.. +.+...+..+...+...|++++|+..|++..+.. .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 88888888888887754 3456778888888888888888888888887776 57788888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009255 156 MIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMG 212 (539)
Q Consensus 156 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (539)
+..++...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888887763 4456677778888888888888888877653
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=1.3e-14 Score=127.96 Aligned_cols=229 Identities=14% Similarity=0.050 Sum_probs=187.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 009255 254 DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQ----SGKTEQAIDMLNELLQSGMIPDETTFN 329 (539)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (539)
++..+..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556677777888888888888888888773 356677778888888 888999999998888764 667777
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 009255 330 TIIHGFCS----EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR----EGILEKALKFFRSWILKGKAVDSVTYNTL 401 (539)
Q Consensus 330 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 401 (539)
.+...+.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 899999999999888864 67788888888888 899999999999988864 56677888
Q ss_pred HHHHHc----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcccccCCCCC
Q 009255 402 ISSLCK----ERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE----SGRLEEAQKFTSIMVETGKINHQVVQPNTSK 473 (539)
Q Consensus 402 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 473 (539)
...|.. .+++++|+..+++..+.+ +...+..++..+.. .+++++|.++++++++.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------- 216 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE------------- 216 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-------------
Confidence 888887 889999999999988764 45677788888888 899999999999999875
Q ss_pred CCCCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 009255 474 TPEEIDPSSISYSEKINEHCS----QGRYKDALQIFEETRQKGIAINKST 519 (539)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 519 (539)
| ...+..++.+|.. .|++++|++.|+++.+.+ |+...
T Consensus 217 ------~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 257 (273)
T 1ouv_A 217 ------N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGAC 257 (273)
T ss_dssp ------C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHH
T ss_pred ------C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC--CHHHH
Confidence 4 5578888999998 899999999999999854 55443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=8.5e-16 Score=140.41 Aligned_cols=245 Identities=10% Similarity=0.072 Sum_probs=204.4
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 009255 255 EVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGK-TEQAIDMLNELLQSGMIPDETTFNTIIH 333 (539)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (539)
...+..+...+...|++++|+..+++++..++. +...|..+..++...|+ +++|+..+++++...+. +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 456777888888999999999999999988655 78889999999999997 99999999999987554 7788999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-cCChH
Q 009255 334 GFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCK-ERRLE 412 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 412 (539)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++++..+. +...|+.++.++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999875 348889999999999999999999999999998544 78899999999998 66658
Q ss_pred HH-----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhH
Q 009255 413 DA-----FGLLSEMEEKKLGPDRYTYAAIHTALVESG--RLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISY 485 (539)
Q Consensus 413 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (539)
+| +..+++++... +-+...+..++.++...| ++++|.+.+.++ +.. +.+...+
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~------------------p~~~~al 312 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS------------------HSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT------------------CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC------------------CCCHHHH
Confidence 88 58899988753 345678888888898888 689999999887 443 3444589
Q ss_pred HHHHHHHhhcC---------CHHHHHHHHHHH-HHcCCCCCHHHHHHHHH
Q 009255 486 SEKINEHCSQG---------RYKDALQIFEET-RQKGIAINKSTYMNLMN 525 (539)
Q Consensus 486 ~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~p~~~~~~~~l~ 525 (539)
..++.+|.+.| ..++|+++|+++ ++ +.|+...+...+.
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIG 360 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHH
Confidence 99999999875 359999999999 75 6788765444444
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.73 E-value=1.1e-13 Score=135.08 Aligned_cols=454 Identities=9% Similarity=-0.007 Sum_probs=285.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hHHHHHH
Q 009255 26 LNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGM---LEEAFRL 102 (539)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~ 102 (539)
..+.+..|++.+..+ |.|...|..++..+.+.+.++.+..+|+.+...- +.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444555666666665 5688888888888888888888888888888763 3466778888888778888 8888888
Q ss_pred HHHHHhCC-CCCChhhHHHHHHHHhccCCH--------hHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh--------
Q 009255 103 RKEMESLK-LLPDVVTYNTLINRFFESGRS--------MEAFKLIDELDE-HGI-KP-NAVTHNIMIKWYCK-------- 162 (539)
Q Consensus 103 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~-------- 162 (539)
|++..... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 88887753 137777787777655554443 234466666543 354 34 34567666665432
Q ss_pred -cCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 009255 163 -EGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYM 241 (539)
Q Consensus 163 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (539)
.++++.+..+|++.+......-..+|......-...+. ..+.+++.+. ..+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHH
Confidence 33466777788777742111111223222111100000 0011111110 012222333
Q ss_pred HHHHHhhc--C----Cc-----------c--C------HhhHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCC
Q 009255 242 LLNSASKR--G----YY-----------L--D------EVSYGTLITGYFRDE-------KANRALKLWDEMKERQIMPS 289 (539)
Q Consensus 242 ~~~~~~~~--~----~~-----------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~ 289 (539)
.+..+... + ++ | + ...|...+..-...+ ....+..+|++.+...+. .
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-A 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-C
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-C
Confidence 33221110 0 00 0 0 123333333322222 123456778888776443 7
Q ss_pred HhhHHHHHHHHHcCCCHHHHH-HHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC---------CC-
Q 009255 290 TFTYNAMIWGLSQSGKTEQAI-DMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSF---------KP- 358 (539)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~- 358 (539)
...|...+..+...|+.+.|. .++++.... .+.+...+...+......|+++.|..+|+.++.... .|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 788888888888888888896 999998875 334555666777788888999999999999886310 12
Q ss_pred -----------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-CChHHHHHHHHHHHhCCC
Q 009255 359 -----------DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE-RRLEDAFGLLSEMEEKKL 426 (539)
Q Consensus 359 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~ 426 (539)
...+|...+....+.|+.+.|.++|.++.+.-..+....|...+....+. ++++.|..+|+..++. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 13367777887788899999999999998751122344555444444444 4589999999999876 3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHH
Q 009255 427 GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHCSQGRYKDALQIF 505 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 505 (539)
+.+...+...+......|+.+.|+.+|++++..... +... ..|..++..-...|+.+.+..+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~----------------~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD----------------SHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS----------------TTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC----------------HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445566667777777889999999999999987611 0123 38899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHH
Q 009255 506 EETRQKGIAINKSTYMNLM 524 (539)
Q Consensus 506 ~~~~~~~~~p~~~~~~~~l 524 (539)
+++.+. .|+......+.
T Consensus 565 ~R~~~~--~P~~~~~~~f~ 581 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFT 581 (679)
T ss_dssp HHHHHH--STTCCHHHHHH
T ss_pred HHHHHh--CCCCcHHHHHH
Confidence 999984 56655444443
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.5e-15 Score=132.77 Aligned_cols=225 Identities=12% Similarity=0.062 Sum_probs=161.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CC----HhhHHH
Q 009255 222 TLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIM--PS----TFTYNA 295 (539)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 295 (539)
.+..+...+...|++++|...++.+.+.. .+...+..+...+...|++++|+..++++....+. ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44455555555666666666666655554 35556666666666666666666666665543221 11 466777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 009255 296 MIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGI 375 (539)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (539)
+...+...|++++|...++++.... |+. ..+...|++++|...++.+.... +.+...+..+..++...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 7777888888888888888877643 332 23555677888888888888763 3356677888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 376 LEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSI 455 (539)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 455 (539)
+++|...++++....+ .+...|..++.++...|++++|+..++++.+.. +.+..++..++.++...|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998887743 367788888899999999999999999988753 44577788888899999999999999999
Q ss_pred HHHcC
Q 009255 456 MVETG 460 (539)
Q Consensus 456 ~~~~~ 460 (539)
+++..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88765
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=4.7e-16 Score=134.67 Aligned_cols=217 Identities=15% Similarity=0.127 Sum_probs=155.7
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS 368 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (539)
....|..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 445666677777888888888888888877533 356777778888888888888888888887764 346778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 009255 369 GLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE 448 (539)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (539)
++...|++++|...++++.+... .+...+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 88889999999999988887643 367788888888999999999999999988653 4457778888889999999999
Q ss_pred HHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 449 AQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 449 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
|++.++++++.. +.+...+..++.+|...|++++|...++++++ ..|+.......+..+.
T Consensus 178 A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 178 ALSQFAAVTEQD------------------PGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHhC------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHHHHHHH
Confidence 999999998886 34455888999999999999999999999987 4677766655555444
Q ss_pred h
Q 009255 529 K 529 (539)
Q Consensus 529 ~ 529 (539)
.
T Consensus 238 ~ 238 (243)
T 2q7f_A 238 H 238 (243)
T ss_dssp -
T ss_pred h
Confidence 3
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.71 E-value=6.6e-13 Score=129.50 Aligned_cols=428 Identities=9% Similarity=-0.035 Sum_probs=284.7
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---HhHHHHHHHHHHhCCC-CCChhh
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGW---LKEAMRVVDLMTQNKS-LPDVWT 82 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~ 82 (539)
+-|..+|..++..+.+.+.++.+..+|++++.. +|.....|...+..-.+.|+ ++.+..+|++.....+ .|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 457889999999999999999999999999988 57788899999999889999 9999999999998742 378889
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHHHHHh-CCC-CC-ChhhHHHHHHHHhc---------cCCHhHHHHHHHHHH
Q 009255 83 YNMLINGWCNAGML--------EEAFRLRKEMES-LKL-LP-DVVTYNTLINRFFE---------SGRSMEAFKLIDELD 142 (539)
Q Consensus 83 ~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 142 (539)
|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+.++|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888877666654 334577877554 454 44 34678777765432 345677889999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh--CC----C
Q 009255 143 EHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGR--KG----L 216 (539)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~ 216 (539)
......-..+|......-...+. ..+..++.+. ..+++.|...+.++.. .+ +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 53111122334332222111111 1122221111 1122333333332211 00 0
Q ss_pred C-----------C-----C---HHhHHHHHHHHhccC-------CHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCC
Q 009255 217 K-----------M-----N---TITLNTILHTLCCEK-------KLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEK 270 (539)
Q Consensus 217 ~-----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (539)
+ | + ...|...+..--..+ ..+.+..+|+++.... +..+..|...+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 0 0 0 122333333222221 1233456777777653 3467788888888888888
Q ss_pred HHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---------CCC------------HHhH
Q 009255 271 ANRAL-KLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGM---------IPD------------ETTF 328 (539)
Q Consensus 271 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~ 328 (539)
.++|. .+|++.....+ .+...|...+......|+++.|.++|+++..... .|+ ...|
T Consensus 359 ~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88886 99998887543 3666777788888889999999999998876310 121 2356
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 009255 329 NTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCRE-GILEKALKFFRSWILKGKAVDSVTYNTLISSLCK 407 (539)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (539)
...+....+.|+.+.|..+|..+++........+|...+..-.+. ++.+.|.++|+..++. .+.++..|..++.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 667777778889999999999998761122344554444444444 4589999999999887 44466677788888888
Q ss_pred cCChHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 408 ERRLEDAFGLLSEMEEKKLGP--DRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 408 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.|+.+.|..+|++++.....+ ....|..++..-...|+.+.+.++.+++.+..
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 899999999999998764222 23566677777778899999999999999887
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=3.7e-15 Score=129.80 Aligned_cols=212 Identities=13% Similarity=0.022 Sum_probs=152.5
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 009255 290 TFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSG 369 (539)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 369 (539)
...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 34556666666777777777777777666532 245666677777777777777777777777653 3356677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 009255 370 LCREGILEKALKFFRSWILKGKAV-DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE 448 (539)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (539)
|...|++++|.+.++++...+..| +...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888777622223 45567777888888888888888888887653 3346777788888888888888
Q ss_pred HHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009255 449 AQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLM 524 (539)
Q Consensus 449 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 524 (539)
|.++++++++.. +.+...+..++..+...|++++|.+.++++.+ ..|+...+..++
T Consensus 194 A~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQGG------------------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTS------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHHHHHH
T ss_pred HHHHHHHHHHhC------------------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHHHHHH
Confidence 888888888765 34445778888888888888888888888887 457766655443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=6.3e-15 Score=129.96 Aligned_cols=236 Identities=13% Similarity=0.007 Sum_probs=178.2
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHH
Q 009255 221 ITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPS--TFTYNAMIW 298 (539)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 298 (539)
..+......+...|++++|...++.+.+... .+...+..+...|...|++++|+..++++......++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3455566667777777777777777776542 2455677777788888888888888888777321111 234778888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 009255 299 GLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEK 378 (539)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 378 (539)
.+...|++++|+..++++.+..+. +...+..+...+...|++++|...++++++.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999988876433 56788888889999999999999999988873 4467777777733444569999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCC---hHHHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHhcCCHHH
Q 009255 379 ALKFFRSWILKGKAVDSVTYNTLISSLCKERR---LEDAFGLLSEMEEKK-LGPD------RYTYAAIHTALVESGRLEE 448 (539)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 448 (539)
|...|+++.+..+ .+...+..++.++...|+ +++|...++++.+.. -.|+ ..++..++..+...|++++
T Consensus 161 A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999988733 356778888888888888 888999999887541 1233 2567778899999999999
Q ss_pred HHHHHHHHHHcC
Q 009255 449 AQKFTSIMVETG 460 (539)
Q Consensus 449 A~~~~~~~~~~~ 460 (539)
|.++++++++.+
T Consensus 240 A~~~~~~al~~~ 251 (272)
T 3u4t_A 240 ADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999999997
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=9.3e-15 Score=124.77 Aligned_cols=213 Identities=9% Similarity=-0.012 Sum_probs=157.1
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS 368 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (539)
+...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 345666667777777777777777777766532 245667777777777888888888888777653 336677777888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 009255 369 GLCRE-GILEKALKFFRSWILKGKAV-DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRL 446 (539)
Q Consensus 369 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (539)
++... |++++|...++++...+..| +...+..++.++...|++++|+..++++.+.. +.+...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887722222 24567788888888888888888888887653 33467777888888888999
Q ss_pred HHHHHHHHHHHHcCCCCcccccCCCCCCCCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009255 447 EEAQKFTSIMVETGKINHQVVQPNTSKTPEEID-PSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLM 524 (539)
Q Consensus 447 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 524 (539)
++|.+.++++++.. + .+...+..++..+...|+.++|...++.+.+ ..|+......++
T Consensus 164 ~~A~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRV------------------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHH------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC------------------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHh
Confidence 99999999888876 3 3444777777788888999999888888876 357776665544
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=7.6e-15 Score=134.14 Aligned_cols=249 Identities=10% Similarity=0.057 Sum_probs=199.7
Q ss_pred HHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 009255 220 TITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEK-ANRALKLWDEMKERQIMPSTFTYNAMIW 298 (539)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (539)
...+..+..++...|++++|+..+++++..... +...|..+...+...|+ +++|+..|++++..++. +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 345566666777788888888888888876433 66778888888888886 99999999998887665 7888999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-cCCHH
Q 009255 299 GLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR-EGILE 377 (539)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 377 (539)
++...|++++|+..|+++++..+. +...|..+..++...|++++|+..++++++... .+...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999887544 777888888999999999999999999998753 478889999999988 56657
Q ss_pred HH-----HHHHHHHHHcCCCCChhhHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC------
Q 009255 378 KA-----LKFFRSWILKGKAVDSVTYNTLISSLCKER--RLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESG------ 444 (539)
Q Consensus 378 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 444 (539)
+| +..+++++...+. +...|+.+..++...| ++++|++.+.++ +. -+.+...+..++.++.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5888888887433 6778999999999888 689999999988 33 2455678888999988864
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhh
Q 009255 445 ---RLEEAQKFTSIM-VETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCS 494 (539)
Q Consensus 445 ---~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 494 (539)
.+++|+++++++ ++.+ |... .|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-------------------P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-------------------TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------------------GGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-------------------chhHHHHHHHHHHHHH
Confidence 358999999999 7776 6554 78777766654
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=4.4e-15 Score=131.22 Aligned_cols=245 Identities=9% Similarity=-0.054 Sum_probs=174.1
Q ss_pred ccCCHHHHHHHHHHHhhcCC---ccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHH
Q 009255 232 CEKKLDEAYMLLNSASKRGY---YLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQ 308 (539)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (539)
..|++++|...++.+.+... +.+...+..+...+...|++++|...|+++....+. +..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 34566666666666665421 113456667777788888888888888887776543 67778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 309 AIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWIL 388 (539)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 388 (539)
|...++++.+..+. +...+..+..++...|++++|...++++.+.. |+..........+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888888776432 56777788888888888888888888888753 3333333344455667899999999988777
Q ss_pred cCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009255 389 KGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKIN 463 (539)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 463 (539)
.. +++...+ .++..+...++.++|+..++++... .|+ ..++..++.++...|++++|.+.++++++..
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 245 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--- 245 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---
Confidence 63 3344444 4667777888888999999888754 232 4677788899999999999999999999876
Q ss_pred cccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 009255 464 HQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIF 505 (539)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 505 (539)
|+.. ...+.++...|++++|++.+
T Consensus 246 ----------------p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 ----------------VHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ----------------CTTC--HHHHHHHHHHHHHHHC----
T ss_pred ----------------chhH--HHHHHHHHHHHHHHhhHHHH
Confidence 4332 23356777889999988876
No 52
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=7.5e-17 Score=157.25 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 009255 11 VTYNTILDALFKKGKLNEVRDLLSDMKK---QGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLI 87 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (539)
.+||++|.+|++.|++++|..+|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|...|..||..+|+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4799999999999999999999988764 4788999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCh-HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCC------HHHHHHHHHHH
Q 009255 88 NGWCNAGML-EEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPN------AVTHNIMIKWY 160 (539)
Q Consensus 88 ~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~ 160 (539)
.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. ..++..+++ ..+..|+ ..+...|...|
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHHH
Confidence 999999984 78899999999999999999999887544332 344444444 2334443 44555566666
Q ss_pred HhcC
Q 009255 161 CKEG 164 (539)
Q Consensus 161 ~~~g 164 (539)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6655
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=1.3e-13 Score=121.42 Aligned_cols=224 Identities=12% Similarity=0.013 Sum_probs=155.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHHhCCCCCChhhHH
Q 009255 9 DNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCK----LGWLKEAMRVVDLMTQNKSLPDVWTYN 84 (539)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (539)
+..++..+...+...|++++|...|++..+. .+..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566677777777778888888888877773 355667777777777 778888888887777754 566677
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 009255 85 MLINGWCN----AGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFE----SGRSMEAFKLIDELDEHGIKPNAVTHNIM 156 (539)
Q Consensus 85 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (539)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777653 56667777777777 777777777777777654 45566666
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009255 157 IKWYCK----EGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCK----AGNMEEAFRMMDVMGRKGLKMNTITLNTILH 228 (539)
Q Consensus 157 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (539)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777776653 44556666666766 777777777777766653 2445555666
Q ss_pred HHhc----cCCHHHHHHHHHHHhhcC
Q 009255 229 TLCC----EKKLDEAYMLLNSASKRG 250 (539)
Q Consensus 229 ~~~~----~~~~~~a~~~~~~~~~~~ 250 (539)
.+.. .++.++|...+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6665 666666666666666554
No 54
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=6.4e-17 Score=157.74 Aligned_cols=128 Identities=10% Similarity=0.151 Sum_probs=108.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 009255 80 VWTYNMLINGWCNAGMLEEAFRLRKEMES---LKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIM 156 (539)
Q Consensus 80 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (539)
..+|+++|++|++.|++++|..+|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35799999999999999999999988764 468899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 157 IKWYCKEGK-IDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVM 211 (539)
Q Consensus 157 ~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (539)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+ +.+++.++++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh
Confidence 999999987 47888999999999999999999988765544 3444444444
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=4.8e-14 Score=122.67 Aligned_cols=202 Identities=13% Similarity=0.010 Sum_probs=166.4
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 009255 255 EVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHG 334 (539)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (539)
...+..+...+...|++++|...|+++....+. +...+..+...+...|++++|...++++.+..+ .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 455677777888888888888888888776443 677888888889999999999999998887643 366778888888
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 009255 335 FCSEGQVEKALQFHNKMVEKSFKP-DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLED 413 (539)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 413 (539)
+...|++++|..+++++.+.+..| +...+..++.++...|++++|...++++..... .+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988732233 566788888899999999999999999888743 367788899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 414 AFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
|...++++.+.. +.+...+..++..+...|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998653 4566778888888999999999999999999987
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=5.2e-15 Score=128.03 Aligned_cols=202 Identities=12% Similarity=0.088 Sum_probs=152.2
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 009255 254 DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIH 333 (539)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (539)
....+..+...+...|++++|...|+++....+. +...+..+...+...|++++|...++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 4455666777788888888888888888776443 677888888888889999999999988887643 36677888888
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 009255 334 GFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLED 413 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 413 (539)
.+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++..... .+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999999888764 34677888889999999999999999999887733 367788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 414 AFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
|+..++++.+.. +.+..++..++.++...|++++|.+.++++++..
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999988753 4457788889999999999999999999999987
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=1.1e-14 Score=119.76 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=146.3
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLIS 403 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 403 (539)
+..+|..+...+...|++++|...|+++++.. +.+..++..+..+|.+.|++++|...++.+...... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56678888889999999999999999988875 347788888999999999999999999998877433 6677888888
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI 483 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (539)
.+...++++.|...+.++.... +.+...+..++.++...|++++|++.++++++.+ |.+..
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------------------p~~~~ 142 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------------------PGFIR 142 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------------------chhhh
Confidence 8999999999999999988753 4457788889999999999999999999999987 34445
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKST 519 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 519 (539)
+|..++.+|.+.|++++|++.|+++++ +.|+...
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~a~ 176 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALE--KEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--CCccCHH
Confidence 999999999999999999999999997 5676644
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=3.7e-15 Score=131.73 Aligned_cols=224 Identities=11% Similarity=-0.020 Sum_probs=147.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 20 LFKKGKLNEVRDLLSDMKKQGL---VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
+...|++++|+..|+++.+... +.+..++..++..+...|++++|...|+.+.+..+. +...+..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3456788888888888887632 224557778888888888888888888888876543 677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 009255 97 EEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNM 176 (539)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 176 (539)
++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+. .|+.......+..+...|++++|...++..
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888887753 345677778888888888888888888888764 233333334444556667888888888766
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 009255 177 EENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKM---NTITLNTILHTLCCEKKLDEAYMLLNSASKR 249 (539)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (539)
.... +++...+ .++..+...++.++|++.++......... +...+..+..++...|++++|...++.+...
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 6542 3333333 36666667777777777777765532110 1233444444444555555555555544443
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=1.3e-13 Score=117.52 Aligned_cols=203 Identities=9% Similarity=0.032 Sum_probs=162.6
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 009255 254 DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIH 333 (539)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (539)
+...+..+...+...|++++|...++++....+. +...+..+...+...|++++|...++++....+ .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 4556777778888888888888888888776443 577888888888888999999999988887643 35677888888
Q ss_pred HHhcC-CCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 009255 334 GFCSE-GQVEKALQFHNKMVEKSFKP-DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRL 411 (539)
Q Consensus 334 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 411 (539)
.+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++....+ .+...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 88889 99999999999888732222 366788888889999999999999999887633 3577888899999999999
Q ss_pred HHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 412 EDAFGLLSEMEEKKLG-PDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999988753 3 456677777778888999999999999988776
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=5.6e-15 Score=138.71 Aligned_cols=282 Identities=11% Similarity=0.043 Sum_probs=166.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHH
Q 009255 184 DCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMN----TITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYG 259 (539)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (539)
....+......+...|++++|+..|+++.+.... + ...+..+...+...|+++.|...++++.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------- 78 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR-------- 78 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--------
Confidence 3344455556666666666666666666554211 2 12344445555555555555555554432200
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-C----CHHhHHHHHH
Q 009255 260 TLITGYFRDEKANRALKLWDEMKERQIM-PSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMI-P----DETTFNTIIH 333 (539)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~ 333 (539)
..+.. ....++..+...+...|++++|...++++...... + ...++..+..
T Consensus 79 -----------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 79 -----------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp -----------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 00000 01233444444555555555555555544332000 0 1224555555
Q ss_pred HHhcCCC--------------------HHHHHHHHHHHHhC----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 334 GFCSEGQ--------------------VEKALQFHNKMVEK----SF-KPDIVTCNILLSGLCREGILEKALKFFRSWIL 388 (539)
Q Consensus 334 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 388 (539)
.+...|+ +++|...+++..+. +. .....++..+..+|...|++++|...+++...
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666666 66666666655432 11 11234667777888888888888888888765
Q ss_pred cCCC-CC----hhhHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 389 KGKA-VD----SVTYNTLISSLCKERRLEDAFGLLSEMEEKKL-GPD----RYTYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 389 ~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
.... ++ ..++..++..+...|++++|...++++.+... .++ ..++..++.++...|++++|.+.++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4111 11 22677888888899999999999888774310 111 45667788889999999999999999887
Q ss_pred cCCCCcccccCCCCCCCCCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 459 TGKINHQVVQPNTSKTPEEIDPS-SISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
...... .++. ..++..++.+|...|++++|.+.++++++
T Consensus 296 ~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 296 IAQELN-------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTT-------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcC-------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 642100 0011 23788899999999999999999998775
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=6.4e-15 Score=138.54 Aligned_cols=241 Identities=14% Similarity=0.105 Sum_probs=154.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC----C-CCCCHHh
Q 009255 258 YGTLITGYFRDEKANRALKLWDEMKER----Q-IMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQS----G-MIPDETT 327 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 327 (539)
+..+...|...|++++|+..+++.... + ......++..+...|...|++++|...++++... + ......+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 333444444444444444444443321 0 0112334555555566666666666666554432 1 0112335
Q ss_pred HHHHHHHHhcCCC-----------------HHHHHHHHHHHHhC----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 328 FNTIIHGFCSEGQ-----------------VEKALQFHNKMVEK----S-FKPDIVTCNILLSGLCREGILEKALKFFRS 385 (539)
Q Consensus 328 ~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (539)
+..+...+...|+ +++|...+++..+. + ......++..+..+|...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666677 77777777665532 1 111234677788888899999999999988
Q ss_pred HHHcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHHHHHhCCC--C---CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 386 WILKGKA-VD----SVTYNTLISSLCKERRLEDAFGLLSEMEEKKL--G---PDRYTYAAIHTALVESGRLEEAQKFTSI 455 (539)
Q Consensus 386 ~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 455 (539)
....... ++ ...+..++.+|...|++++|...++++.+... . ....++..++.++...|++++|.+++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7764211 11 22678889999999999999999998875411 0 1145677888999999999999999999
Q ss_pred HHHcCCCCcccccCCCCCCCCCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 009255 456 MVETGKINHQVVQPNTSKTPEEIDPS-SISYSEKINEHCSQGRYKDALQIFEETRQK 511 (539)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 511 (539)
+++...... ..+. ..++..++.+|...|++++|.+.++++++.
T Consensus 329 al~~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 329 HLAIAQELG-------------DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHT-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 987641100 0011 227889999999999999999999999873
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.1e-14 Score=136.67 Aligned_cols=310 Identities=14% Similarity=0.090 Sum_probs=205.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC
Q 009255 147 KPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPD----CVTYNTLIDANCKAGNMEEAFRMMDVMGRK----GLKM 218 (539)
Q Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 218 (539)
......+......+...|++++|...|++..+.. +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456677788899999999999999999998863 223 356788889999999999999999987542 1111
Q ss_pred -CHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 009255 219 -NTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMI 297 (539)
Q Consensus 219 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (539)
...++..+...+...|++++|...++++....... ........++..+.
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL------------------------------NDKVGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc------------------------------ccccchHHHHHHHH
Confidence 12234444455555555555555555444431100 00000123455555
Q ss_pred HHHHcCCC--------------------HHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009255 298 WGLSQSGK--------------------TEQAIDMLNELLQS----GMIP-DETTFNTIIHGFCSEGQVEKALQFHNKMV 352 (539)
Q Consensus 298 ~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (539)
..+...|+ +++|...+++.... +..+ ...++..+...+...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666 66676666665432 1111 13356677778888888888888888876
Q ss_pred hCCC-CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHHHHH
Q 009255 353 EKSF-KPD----IVTCNILLSGLCREGILEKALKFFRSWILKGKA-VD----SVTYNTLISSLCKERRLEDAFGLLSEME 422 (539)
Q Consensus 353 ~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 422 (539)
+... .++ ..++..+..+|...|++++|...+++....... ++ ..++..++..+...|++++|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5310 111 337778888899999999999999887754111 11 4467888999999999999999999887
Q ss_pred hCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC-hhhHHHHHHHHhhcC
Q 009255 423 EKKL-GPD----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS-SISYSEKINEHCSQG 496 (539)
Q Consensus 423 ~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 496 (539)
+... .++ ..++..++.++...|++++|.++++++++...... .++. ..++..++.++...|
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG-------------DKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CCcchhHHHHHHHHHHHHhh
Confidence 5411 111 45677888999999999999999999887642100 0122 237888899998888
Q ss_pred CHHH
Q 009255 497 RYKD 500 (539)
Q Consensus 497 ~~~~ 500 (539)
+...
T Consensus 362 ~~~~ 365 (406)
T 3sf4_A 362 LSYS 365 (406)
T ss_dssp TTSC
T ss_pred HhHH
Confidence 7643
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=8.1e-13 Score=118.39 Aligned_cols=219 Identities=11% Similarity=0.025 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-------cCCCH-------HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 009255 272 NRALKLWDEMKERQIMPSTFTYNAMIWGLS-------QSGKT-------EQAIDMLNELLQSGMIPDETTFNTIIHGFCS 337 (539)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (539)
++|...|++++...+. ++..|..++..+. ..|++ ++|..+|++..+.-.+.+...+..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5667777777665433 6667766666654 34665 7888888887763122245567777777778
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-ccCChHHHH
Q 009255 338 EGQVEKALQFHNKMVEKSFKPDIV-TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLC-KERRLEDAF 415 (539)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~ 415 (539)
.|++++|..+|+++++... .+.. +|..++..+.+.|++++|..+|+++++..+ ++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887532 1333 677777777788888888888888877532 24444544433322 268888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC--hhhHHHHHHHHh
Q 009255 416 GLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS--SISYSEKINEHC 493 (539)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 493 (539)
.+|+++++.. +.+...+..++..+...|++++|+.+|+++++.... +|+ ...|..++..+.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l----------------~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL----------------PPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS----------------CGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC----------------CHHHHHHHHHHHHHHHH
Confidence 8888887642 335667777777788888888888888888875321 242 337777888888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
..|+.++|..+++++++
T Consensus 253 ~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 253 NIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888888876
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=3.3e-14 Score=135.20 Aligned_cols=214 Identities=11% Similarity=-0.020 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCH-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHH
Q 009255 271 ANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKT-EQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHN 349 (539)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (539)
+++++..+++...... .+...+..+...+...|++ ++|+..|+++.+..+. +...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566666766555433 3678888888999999999 9999999998886433 57788899999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc--------CChH
Q 009255 350 KMVEKSFKPDIVTCNILLSGLCRE---------GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE--------RRLE 412 (539)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 412 (539)
++++.. |+...+..+..+|... |++++|+..++++.+..+. +...|..++.+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999874 5678888999999998 9999999999999987433 678899999999988 9999
Q ss_pred HHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHH
Q 009255 413 DAFGLLSEMEEKKLG---PDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKI 489 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (539)
+|+..|+++.+.. + .+...+..++.++...|++++|.+.++++++.. +.+..++..++
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------p~~~~a~~~l~ 299 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD------------------PAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHH
Confidence 9999999999753 2 367889999999999999999999999999987 33444899999
Q ss_pred HHHhhcCCHHHHHHHHHHH
Q 009255 490 NEHCSQGRYKDALQIFEET 508 (539)
Q Consensus 490 ~~~~~~g~~~~A~~~~~~~ 508 (539)
.++...|++++|++.+.++
T Consensus 300 ~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999999876554
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=2.7e-14 Score=135.78 Aligned_cols=209 Identities=12% Similarity=0.071 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCH-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 009255 305 KTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQV-EKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFF 383 (539)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (539)
..++++..+++..... +.+...+..+...+...|++ ++|...|+++++.. +.+...+..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566777777766543 34778888999999999999 99999999999875 346889999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHcc---------CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc--------CCH
Q 009255 384 RSWILKGKAVDSVTYNTLISSLCKE---------RRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVES--------GRL 446 (539)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 446 (539)
+++.+. .|+...+..+..++... |++++|+..++++.+.. +.+...+..++.++... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999987 46678899999999999 99999999999999763 44578888999999988 999
Q ss_pred HHHHHHHHHHHHcCCCCcccccCCCCCCCCCCC---CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009255 447 EEAQKFTSIMVETGKINHQVVQPNTSKTPEEID---PSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNL 523 (539)
Q Consensus 447 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 523 (539)
++|++.++++++.. + .+...|..++.+|...|++++|++.|+++++ +.|+.......
T Consensus 238 ~~A~~~~~~al~~~------------------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~ 297 (474)
T 4abn_A 238 QQALSAYAQAEKVD------------------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHHHHC------------------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhC------------------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 99999999999987 2 2455999999999999999999999999998 56887776666
Q ss_pred HHHHHhcCCchhhcc
Q 009255 524 MNGLIKRRKSISKAV 538 (539)
Q Consensus 524 l~~~~~~~~~~~~A~ 538 (539)
++.++...+++++|+
T Consensus 298 l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 298 EQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666677775
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=2.3e-14 Score=130.73 Aligned_cols=207 Identities=12% Similarity=0.034 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHhcCCC--------------------HHHHH
Q 009255 291 FTYNAMIWGLSQSGKTEQAIDMLNELLQSGM-IPD----ETTFNTIIHGFCSEGQ--------------------VEKAL 345 (539)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 345 (539)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3445555555666666666666655443210 011 2245555566666666 67777
Q ss_pred HHHHHHHhC----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccCChHHHH
Q 009255 346 QFHNKMVEK----S-FKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKA-VD----SVTYNTLISSLCKERRLEDAF 415 (539)
Q Consensus 346 ~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~ 415 (539)
..+++.... + ......++..+...+...|++++|...+++....... ++ ..++..++..+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 766665432 1 1112346777888888899999999999887754111 11 236788889999999999999
Q ss_pred HHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC-hhhHHHHH
Q 009255 416 GLLSEMEEKKL-GPD----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS-SISYSEKI 489 (539)
Q Consensus 416 ~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 489 (539)
..+++..+... .++ ..++..++.++...|++++|.+.++++++....... ++. ..++..++
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------------~~~~~~~~~~la 310 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-------------RIGEGRACWSLG 310 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-------------cHHHHHHHHHHH
Confidence 99998875310 111 456778889999999999999999998876411000 011 22788999
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 009255 490 NEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 490 ~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.+|...|++++|...++++++
T Consensus 311 ~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999987
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=8.7e-14 Score=129.23 Aligned_cols=230 Identities=10% Similarity=-0.023 Sum_probs=167.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCC-CC----CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-C-----CHHhHH
Q 009255 261 LITGYFRDEKANRALKLWDEMKERQI-MP----STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMI-P-----DETTFN 329 (539)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 329 (539)
....+...|++++|+..+++....-. .+ ...++..+...|...|+++.|...+++..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55566778888888888888765310 11 2356777888888889999998888887653111 1 134677
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCC-----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhhHH
Q 009255 330 TIIHGFCSEGQVEKALQFHNKMVEKSF-----KPDIVTCNILLSGLCREGILEKALKFFRSWILK----GK-AVDSVTYN 399 (539)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 399 (539)
.+...|...|++++|...++++++... .....++..+..+|...|++++|...+++.... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888999999999999988875311 111247788899999999999999999988872 22 33455788
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCC---CCC-HhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcccccCCCC
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEKKL---GPD-RYTYAAIHTALVESGR---LEEAQKFTSIMVETGKINHQVVQPNTS 472 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 472 (539)
.++.++...|++++|...++++.+... .|. ...+..++..+...|+ +++|..++++. +.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~----------- 334 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML----------- 334 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC-----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC-----------
Confidence 899999999999999999998875410 122 2335667788888898 66677766655 21
Q ss_pred CCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 473 KTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 473 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.|... .+..++..|...|++++|...++++++
T Consensus 335 ------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 ------YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 13333 788999999999999999999999876
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=2.8e-13 Score=111.35 Aligned_cols=168 Identities=17% Similarity=0.077 Sum_probs=109.5
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS 368 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (539)
++.+|..+...|...|++++|+..|++..+..+. +...+..+..++...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4555666666666666666666666666655332 45566666666666677777776666666553 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 009255 369 GLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE 448 (539)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (539)
.+...++++.|...+.+.....+ .+...+..++.++...|++++|+..|+++.+.. +.+..++..++.++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 66677777777777777666532 255666677777777777777777777776543 3345666677777777777777
Q ss_pred HHHHHHHHHHcC
Q 009255 449 AQKFTSIMVETG 460 (539)
Q Consensus 449 A~~~~~~~~~~~ 460 (539)
|++.++++++.+
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 777777777765
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=4.1e-14 Score=132.99 Aligned_cols=278 Identities=13% Similarity=0.094 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHH
Q 009255 151 VTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDC----VTYNTLIDANCKAGNMEEAFRMMDVMGRK----G-LKMNTI 221 (539)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 221 (539)
..+..+...+...|++++|...|+++.+.+ +.+. .++..+...+...|++++|+..+++.... + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344455666777778888887777777653 2222 35666777777777777777777766442 1 011223
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHH
Q 009255 222 TLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQ-IMPSTFTYNAMIWGL 300 (539)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 300 (539)
.+..+...+...|++++|...++++..... ..+ ......++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHH
Confidence 344444444555555555555444433200 000 001223445555555
Q ss_pred HcCCC-----------------HHHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-
Q 009255 301 SQSGK-----------------TEQAIDMLNELLQS----GM-IPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFK- 357 (539)
Q Consensus 301 ~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 357 (539)
...|+ +++|+..+++..+. +. ......+..+...+...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 56666665554331 11 112235666667777777777777777776653100
Q ss_pred CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHccCChHHHHHHHHHHHhCC---
Q 009255 358 PD----IVTCNILLSGLCREGILEKALKFFRSWILKGKA-----VDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK--- 425 (539)
Q Consensus 358 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 425 (539)
++ ..++..+..+|...|++++|...+++....... ....++..++..+...|++++|...++++....
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 236677788888888888888888877654111 114567788888888999999999988887531
Q ss_pred -CC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 426 -LG-PDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 426 -~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.. ....++..++.++...|++++|.++++++++..
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 01 113467778888999999999999999998875
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=2.6e-13 Score=115.92 Aligned_cols=209 Identities=8% Similarity=0.010 Sum_probs=119.5
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS 368 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (539)
++..+......+...|++++|+..|+++.+..+.++...+..+..++...|++++|...+++.++.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4556666666666666677777666666665443455555556666666666666666666666653 224555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHh---hHHHHHH
Q 009255 369 GLCREGILEKALKFFRSWILKGKAVDS-------VTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRY---TYAAIHT 438 (539)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~ 438 (539)
+|...|++++|...+++..+..+. +. ..|..+...+...|++++|+..|+++++. .|+.. .+..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 666666666666666666655221 33 33555555566666666666666666532 33321 2233334
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 439 ALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
++.. .+...++++.... +.+...+... .....|.+++|+..++++++ +.|+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~------------------~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLA------------------SSNKEKYASE--KAKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGT------------------TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHH-----HHHHHHHHHHhcc------------------cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 4432 2333344444443 1222222221 22334556999999999998 579988
Q ss_pred HHHHHHHHHH
Q 009255 519 TYMNLMNGLI 528 (539)
Q Consensus 519 ~~~~~l~~~~ 528 (539)
.....+..+.
T Consensus 215 ~~~~~l~~i~ 224 (228)
T 4i17_A 215 EIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776554
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=6e-13 Score=123.57 Aligned_cols=231 Identities=10% Similarity=0.040 Sum_probs=158.2
Q ss_pred HHHHhccCCHHHHHHHHHHHhhc----CCcc-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C-----CHhhHHH
Q 009255 227 LHTLCCEKKLDEAYMLLNSASKR----GYYL-DEVSYGTLITGYFRDEKANRALKLWDEMKERQIM-P-----STFTYNA 295 (539)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~~ 295 (539)
...+...|++++|...++++.+. +..+ ...++..+...|...|+++.|+..+.+....... + ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555555555555555442 1011 2345566666777777777777777766542110 1 1346777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC-CCCHHhHHH
Q 009255 296 MIWGLSQSGKTEQAIDMLNELLQSGMI-PD----ETTFNTIIHGFCSEGQVEKALQFHNKMVEK----SF-KPDIVTCNI 365 (539)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 365 (539)
+...|...|++++|...++++.+.... ++ ..++..+..+|...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 788888888888888888887643111 11 236777888899999999999999988762 22 334667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCC-HhhHHHHH
Q 009255 366 LLSGLCREGILEKALKFFRSWILKG----KAVDSVTYNTLISSLCKERR---LEDAFGLLSEMEEKKLGPD-RYTYAAIH 437 (539)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 437 (539)
+..+|...|++++|...+++..... .+.....+..+...+...|+ +++|+.++++. +..|+ ..++..++
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 9999999999999999998877541 11112235678888888998 77788887776 22333 45677889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 009255 438 TALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..+...|++++|.+.++++++..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=7.3e-12 Score=112.16 Aligned_cols=219 Identities=12% Similarity=-0.032 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhhcCCccCHhhHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHc-CCCCCHhhHHHHHHHHH
Q 009255 237 DEAYMLLNSASKRGYYLDEVSYGTLITGYF-------RDEKA-------NRALKLWDEMKER-QIMPSTFTYNAMIWGLS 301 (539)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 301 (539)
+.|...|+++.... +.++..|..++..+. ..|+. ++|..+|++.+.. .+ .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 45666676666642 235566666665554 34665 8899999988873 33 26678888888899
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCCHHHH
Q 009255 302 QSGKTEQAIDMLNELLQSGMIPDET-TFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLC-REGILEKA 379 (539)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 379 (539)
..|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998875322 333 78888888888999999999999998864 334555554444422 36999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCC-CCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 380 LKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK-LGP--DRYTYAAIHTALVESGRLEEAQKFTSIM 456 (539)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 456 (539)
..+|++.++.. +.++..|..++..+...|++++|..+|++++... ++| ....+..++......|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998863 3367788999999999999999999999999863 455 3567778888888899999999999999
Q ss_pred HHcC
Q 009255 457 VETG 460 (539)
Q Consensus 457 ~~~~ 460 (539)
++..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9887
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=4.7e-14 Score=127.06 Aligned_cols=236 Identities=14% Similarity=0.105 Sum_probs=141.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC------CC-
Q 009255 256 VSYGTLITGYFRDEKANRALKLWDEMKER-------QIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQS------GM- 321 (539)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~- 321 (539)
..+..+...+...|++++|...++++... .......++..+...+...|++++|...++++... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555566666666666666666665542 11223445666666677777777777777766543 11
Q ss_pred CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhC------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 009255 322 IPDETTFNTIIHGFCSEGQVEKALQFHNKMVEK------SF-KPDIVTCNILLSGLCREGILEKALKFFRSWILK----- 389 (539)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 389 (539)
......+..+...+...|++++|...++++.+. +. +....++..+..++...|++++|..+++++...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112345666677777777777777777776653 11 223446677777888888888888888877654
Q ss_pred -CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHhC-------CCCCCHhh-------HHHHHHHHHhcCCHHHHHHHH
Q 009255 390 -GKAV-DSVTYNTLISSLCKERRLEDAFGLLSEMEEK-------KLGPDRYT-------YAAIHTALVESGRLEEAQKFT 453 (539)
Q Consensus 390 -~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~ 453 (539)
+..| ...++..++.++...|++++|...++++.+. ...+.... +......+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1111 2346777888888888888888888887752 11222111 222223334455666666677
Q ss_pred HHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 454 SIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+...... |... ++..++.+|...|++++|.+.++++++
T Consensus 268 ~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDS-------------------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------C-------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCC-------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7666554 4444 899999999999999999999999986
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=1.8e-13 Score=124.65 Aligned_cols=277 Identities=13% Similarity=0.090 Sum_probs=168.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHhHHHH
Q 009255 152 THNIMIKWYCKEGKIDKACKIVRNMEENGFSPD----CVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLK-MNTITLNTI 226 (539)
Q Consensus 152 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 226 (539)
.+......+...|++++|...++++.+.. +.+ ...+..+...+...|++++|.+.+++....... .+.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------ 79 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ------ 79 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc------
Confidence 34445566667777777777777776652 122 245556666677777777777777665432000 000
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHH
Q 009255 227 LHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQI-MPS----TFTYNAMIWGLS 301 (539)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~ 301 (539)
+.....+..+...+...|++++|...+++...... .++ ..++..+...+.
T Consensus 80 -------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 80 -------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 00122334444445555555555555554432100 001 224555555666
Q ss_pred cCCC--------------------HHHHHHHHHHHHHC----CCC-CCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC-
Q 009255 302 QSGK--------------------TEQAIDMLNELLQS----GMI-PDETTFNTIIHGFCSEGQVEKALQFHNKMVEKS- 355 (539)
Q Consensus 302 ~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 355 (539)
..|+ +++|...+++.... +.. .....+..+...+...|++++|...+++..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6666 66666666654431 111 113356667777788888888888888776431
Q ss_pred ----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHHHHHhCC-
Q 009255 356 ----FKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKA-VD----SVTYNTLISSLCKERRLEDAFGLLSEMEEKK- 425 (539)
Q Consensus 356 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 425 (539)
......++..+..++...|++++|...+++....... ++ ..++..++..+...|++++|...++++.+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0111336777888888899999999998887654111 11 4467788888999999999999999887531
Q ss_pred ---CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 426 ---LGP-DRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 426 ---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
-.+ ...++..++.++...|++++|.++++++++..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 111 13467788889999999999999999998865
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=1.7e-12 Score=120.20 Aligned_cols=230 Identities=10% Similarity=0.019 Sum_probs=166.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-----CC-CHHhH
Q 009255 260 TLITGYFRDEKANRALKLWDEMKERQI-MPS----TFTYNAMIWGLSQSGKTEQAIDMLNELLQSGM-----IP-DETTF 328 (539)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 328 (539)
.....+...|++++|+..|++...... .++ ..++..+...|...|+++.|...+++..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556778888888888888765311 112 35677788888899999999998888765311 11 23467
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhH
Q 009255 329 NTIIHGFCSEGQVEKALQFHNKMVEK----SFK-PDIVTCNILLSGLCREGILEKALKFFRSWIL-----KGKAVDSVTY 398 (539)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 398 (539)
..+..+|...|++++|...+++.++. +.. ....++..+..+|...|++++|...+++... .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 77888889999999999999887753 111 1234677888899999999999999998887 32 2236678
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCC---CCC-HhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcccccCCC
Q 009255 399 NTLISSLCKERRLEDAFGLLSEMEEKKL---GPD-RYTYAAIHTALVESGR---LEEAQKFTSIMVETGKINHQVVQPNT 471 (539)
Q Consensus 399 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~ 471 (539)
..++.++...|++++|...+++..+... .|. ...+..+...+...|+ +.+|..++++ ...
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~---------- 331 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNL---------- 331 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTC----------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCC----------
Confidence 8899999999999999999999886421 122 2345556666777788 6777776665 221
Q ss_pred CCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 472 SKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 472 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.|+.. .+..++..|...|++++|...|+++++
T Consensus 332 -------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 332 -------HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 13333 777899999999999999999999875
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=8.4e-13 Score=130.46 Aligned_cols=165 Identities=15% Similarity=0.118 Sum_probs=137.1
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLIS 403 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 403 (539)
+...++.+..++...|++++|+..|+++++.. +.+..++..+..+|.+.|++++|+..|+++++..+. +...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 35577888888888888888888888888764 336778888888899999999999999988887433 6778888999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS- 482 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 482 (539)
++...|++++|++.|+++++.+ +-+..++..++.++...|++++|++.|+++++.+ |+.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------------------P~~~ 145 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------------------PDFP 145 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------SCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCCh
Confidence 9999999999999999988653 3346788889999999999999999999999987 554
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 483 ISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 483 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.+|..++.+|...|++++|.+.++++++
T Consensus 146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 146 DAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 4889999999999999999999888775
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.50 E-value=5.6e-12 Score=116.71 Aligned_cols=230 Identities=12% Similarity=0.034 Sum_probs=161.8
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCc-c----CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--C----CCHhhHHH
Q 009255 227 LHTLCCEKKLDEAYMLLNSASKRGYY-L----DEVSYGTLITGYFRDEKANRALKLWDEMKERQI--M----PSTFTYNA 295 (539)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~~ 295 (539)
...+...|++++|...++++.+.... + ...++..+...|...|+++.|...+.+...... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34455667777777777766543111 1 234566777778888888888888877654211 0 12446777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC----CCC-CCHHhHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCCHHhHHH
Q 009255 296 MIWGLSQSGKTEQAIDMLNELLQS----GMI-PDETTFNTIIHGFCSEGQVEKALQFHNKMVE-----KSFKPDIVTCNI 365 (539)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 365 (539)
+...|...|++++|...+++..+. +.. ....++..+..++...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888888999999999988887653 111 1234677788888999999999999998887 43 223678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC---C-ChhhHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCC-HhhHHHHH
Q 009255 366 LLSGLCREGILEKALKFFRSWILKGKA---V-DSVTYNTLISSLCKERR---LEDAFGLLSEMEEKKLGPD-RYTYAAIH 437 (539)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 437 (539)
+..+|.+.|++++|...+++....... | ....+..+...+...++ +.+|+..+++. +..|+ ...+..++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 999999999999999999998875221 1 12245566667777788 77888877763 22333 35666788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 009255 438 TALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..+...|++++|.+.++++++..
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=5.7e-13 Score=131.65 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=140.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 009255 358 PDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIH 437 (539)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 437 (539)
.+..+++.+..+|.+.|++++|++.|+++++..+. +...|..++.+|.+.|++++|+..|+++++.+ +-+..++..++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35678999999999999999999999999987433 67899999999999999999999999999753 33478899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 438 TALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
.++...|++++|++.|+++++.+ |+. .+|.+++.+|...|++++|++.|+++++ +.|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~ 143 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPD 143 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 99999999999999999999997 554 5999999999999999999999999998 6799
Q ss_pred HHHHHHHHHHHHhcCCchhhcc
Q 009255 517 KSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 517 ~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
.......++.++...+++++|.
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHH
T ss_pred ChHHHhhhhhHHHhcccHHHHH
Confidence 8877777887887778898875
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=3.7e-11 Score=111.06 Aligned_cols=203 Identities=12% Similarity=0.020 Sum_probs=123.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC----CHH
Q 009255 258 YGTLITGYFRDEKANRALKLWDEMKER----QIM--P-STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIP----DET 326 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 326 (539)
+..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555566666666666666665432 111 1 12345556667777777777777777766532211 123
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--HHhHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhh
Q 009255 327 TFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPD--IVTCN----ILLSGLCREGILEKALKFFRSWILKGKAVD---SVT 397 (539)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 397 (539)
.+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455666777777888888888877764311111 11111 223446678888888888877765432211 123
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 398 YNTLISSLCKERRLEDAFGLLSEMEEK----KLGPDR-YTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 398 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+..+...+...|++++|...++++... +..++. .++..++.++...|+.++|...+++++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 566777888888888888888877543 211122 355566778888899999998888887754
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=4.1e-12 Score=104.51 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=134.4
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009255 326 TTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSL 405 (539)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (539)
..+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.... +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455666777788888888888888887653 3467788888888888999999999998888763 33677888888889
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhH
Q 009255 406 CKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISY 485 (539)
Q Consensus 406 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (539)
...|++++|...++++.+.. +.+...+..++.++...|++++|.++++++++.. +.+...+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~ 147 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------------------PNEGKVH 147 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------------------ccchHHH
Confidence 99999999999999988753 4567778888889999999999999999999886 3445588
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 486 SEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 486 ~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
..++.++...|++++|...++++++
T Consensus 148 ~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 148 RAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999999886
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=1.9e-11 Score=113.05 Aligned_cols=268 Identities=13% Similarity=0.000 Sum_probs=180.2
Q ss_pred HhccCCHHHHHHHHHHHhhcCCccCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHH
Q 009255 230 LCCEKKLDEAYMLLNSASKRGYYLDE----VSYGTLITGYFRDEKANRALKLWDEMKERQI-MPS----TFTYNAMIWGL 300 (539)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 300 (539)
+...|++++|...++.........+. ..+..+...+...|++++|...+++...... .++ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 33455555555555554443211111 1344555666777788888777777654211 112 23356677888
Q ss_pred HcCCCHHHHHHHHHHHHHC----CCC--C-CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC----CCHHhHHHHHHH
Q 009255 301 SQSGKTEQAIDMLNELLQS----GMI--P-DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFK----PDIVTCNILLSG 369 (539)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~ 369 (539)
...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... .....+..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 9999999999999987653 221 2 2345666788889999999999999998764221 123567778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHccCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHH
Q 009255 370 LCREGILEKALKFFRSWILKGKAVDS-VTYN-----TLISSLCKERRLEDAFGLLSEMEEKKLGPD---RYTYAAIHTAL 440 (539)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~ 440 (539)
+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..++.++
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 99999999999999998765222221 2222 233447789999999999999875432111 23456778899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 441 VESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 441 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
...|++++|.+.++.++...... +.++... .+..++.++...|++++|...++++++
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~-------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSL-------------RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhC-------------cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999987653110 0011222 677889999999999999999999875
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.5e-11 Score=104.89 Aligned_cols=196 Identities=9% Similarity=0.005 Sum_probs=157.2
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 009255 253 LDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTII 332 (539)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (539)
.++..+......+...|++++|+..|++.....+.++...+..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3678888899999999999999999999998876467888888999999999999999999999987543 567888999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHH
Q 009255 333 HGFCSEGQVEKALQFHNKMVEKSFKPDI-------VTCNILLSGLCREGILEKALKFFRSWILKGKAVD---SVTYNTLI 402 (539)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 402 (539)
.++...|++++|...+++.++.. +.+. ..+..+..++...|++++|+..|+++++. .|+ ...|..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999999864 2345 55788888999999999999999999886 343 56778888
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 403 SSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 403 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.+|...| ...++++...+ ..+...+.... ....+.+++|+..++++++..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 8886554 34456665443 33344443332 344577999999999999997
No 83
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=2.9e-12 Score=115.22 Aligned_cols=242 Identities=17% Similarity=0.068 Sum_probs=172.1
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQ-------GLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQN----- 74 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 74 (539)
+.+..++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...++++...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 335667899999999999999999999999873 23445668889999999999999999999988764
Q ss_pred -CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHhccCCHhHHHHHHHHHHhC-
Q 009255 75 -KS-LPDVWTYNMLINGWCNAGMLEEAFRLRKEMESL------KL-LPDVVTYNTLINRFFESGRSMEAFKLIDELDEH- 144 (539)
Q Consensus 75 -~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 144 (539)
+. ......+..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|+++++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 224567888899999999999999999998764 21 223456888899999999999999999998764
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCCChh-hHHH------HHHHHHhcCCHHHH
Q 009255 145 -----GIKP-NAVTHNIMIKWYCKEGKIDKACKIVRNMEEN-------GFSPDCV-TYNT------LIDANCKAGNMEEA 204 (539)
Q Consensus 145 -----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~-~~~~------l~~~~~~~~~~~~a 204 (539)
+..| ...++..+..++...|++++|...++++.+. ...+... .+.. +...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1122 3457888899999999999999999998753 1122222 2221 22222334445555
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 009255 205 FRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKR 249 (539)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (539)
...+...... .+....++..+..+|...|++++|...++++.+.
T Consensus 264 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 264 GGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5556555443 2335667888999999999999999999988764
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.42 E-value=1.2e-11 Score=107.99 Aligned_cols=213 Identities=11% Similarity=0.043 Sum_probs=122.0
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-C-CCHHhHH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPD--ETTFNTIIHGFCSEGQVEKALQFHNKMVEKSF-K-PDIVTCN 364 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~ 364 (539)
+...+......+...|++++|+..|+++.+..+... ...+..+..++...|++++|...|+++++..+ . .....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344455555555566666666666666555432210 34445555555566666666666665555321 1 1133444
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 009255 365 ILLSGLCR--------EGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAI 436 (539)
Q Consensus 365 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 436 (539)
.+..++.. .|++++|...|++++...+. +......+... ..... .-...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~----~~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRA----KLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHH----HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHH----HHHHHHHHH
Confidence 45555555 55555565555555554211 11111111110 00000 000113667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCC-ChhhHHHHHHHHhhc----------CCHHHHHHHH
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDP-SSISYSEKINEHCSQ----------GRYKDALQIF 505 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~ 505 (539)
+.++...|++++|+..++++++..+. .+ ....+..++.+|... |++++|+..|
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPD----------------TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT----------------STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCC----------------CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 88999999999999999999998722 12 223888999999876 9999999999
Q ss_pred HHHHHcCCCCCH---HHHHHHHHHHHhcCCchhhcc
Q 009255 506 EETRQKGIAINK---STYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 506 ~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~ 538 (539)
+++++. .|+. ......+..+...-++++++.
T Consensus 219 ~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 219 ERLLQI--FPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHH--CCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999983 5665 344555666666656565553
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=2.4e-11 Score=99.82 Aligned_cols=164 Identities=15% Similarity=0.061 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 11 VTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGW 90 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (539)
..|..+...+...|++++|...|+++.+.. +.+..++..++..+...|++++|...++.+.+..+ .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345556666667777777777777666553 34566666666777777777777777776665532 2455666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 009255 91 CNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKAC 170 (539)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 170 (539)
...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665542 3345555556666666666666666666655542 224455555666666666666666
Q ss_pred HHHHHHHH
Q 009255 171 KIVRNMEE 178 (539)
Q Consensus 171 ~~~~~~~~ 178 (539)
..++...+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.39 E-value=1.1e-12 Score=103.28 Aligned_cols=145 Identities=9% Similarity=-0.033 Sum_probs=113.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 009255 366 LLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGR 445 (539)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (539)
|..++...|++++|+..++...... +-++..+..++..|...|++++|+..|+++++.. +.+..++..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4455666788899999888877642 2245567788899999999999999999998753 4457888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHH
Q 009255 446 LEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQI-FEETRQKGIAINKSTYMNLM 524 (539)
Q Consensus 446 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~~l 524 (539)
+++|+..++++++.+ |-+..+|..++.+|.+.|++++|.+. ++++++ +.|+.+....+.
T Consensus 81 ~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~ 140 (150)
T 4ga2_A 81 TDKAVECYRRSVELN------------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLK 140 (150)
T ss_dssp HHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 999999999999987 33445899999999999998877665 588887 679888887788
Q ss_pred HHHHhcCC
Q 009255 525 NGLIKRRK 532 (539)
Q Consensus 525 ~~~~~~~~ 532 (539)
..++...|
T Consensus 141 ~~ll~~~G 148 (150)
T 4ga2_A 141 EQLLDCEG 148 (150)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHhC
Confidence 87777666
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=6e-12 Score=111.39 Aligned_cols=232 Identities=15% Similarity=0.073 Sum_probs=152.2
Q ss_pred HccCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHhHHHH
Q 009255 266 FRDEKANRALKLWDEMKER-------QIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQS------GMIP-DETTFNTI 331 (539)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 331 (539)
...|++++|+..+++.... ..+....++..+...+...|++++|...++++.+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3556777777777665541 21224567888888999999999999999988754 1122 34577888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC------C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-Chhh
Q 009255 332 IHGFCSEGQVEKALQFHNKMVEK------S-FKPDIVTCNILLSGLCREGILEKALKFFRSWILK------GKAV-DSVT 397 (539)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~ 397 (539)
...+...|++++|...++++.+. . .+....++..+..+|...|++++|...++++... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999988764 1 1234567788888899999999999999888765 1122 3456
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhC-------CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccC
Q 009255 398 YNTLISSLCKERRLEDAFGLLSEMEEK-------KLGPDR-YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQP 469 (539)
Q Consensus 398 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 469 (539)
+..++.++...|++++|...++++.+. ...+.. ..+..+.......+....+.. +..+.....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------- 242 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYK-------- 242 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHH--------
Confidence 778888899999999999999988753 112222 233333333333333322222 222211110
Q ss_pred CCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 470 NTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 470 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
......|... ++..++.+|...|++++|...++++++
T Consensus 243 ----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 243 ----ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000123333 888999999999999999999999986
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.37 E-value=2.1e-11 Score=108.18 Aligned_cols=209 Identities=11% Similarity=-0.036 Sum_probs=142.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC---CC--CHHhHHHHHH
Q 009255 299 GLSQSGKTEQAIDMLNELLQS----GMIPD-ETTFNTIIHGFCSEGQVEKALQFHNKMVEKSF---KP--DIVTCNILLS 368 (539)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 368 (539)
.|...|++++|...|.+.... +..+. ..++..+..+|...|++++|...+++.++... .+ ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777777777665542 11111 34667777777777888888777777765310 11 1347778888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH------hhHHHH
Q 009255 369 GLCRE-GILEKALKFFRSWILKGKAV-D----SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR------YTYAAI 436 (539)
Q Consensus 369 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l 436 (539)
+|... |++++|+..|++..+..... + ..++..++..+...|++++|+..|+++.+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99996 99999999999988752211 1 346888999999999999999999999976422221 156778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh---hhHHHHHHHHh--hcCCHHHHHHHHHHHHHc
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS---ISYSEKINEHC--SQGRYKDALQIFEETRQK 511 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 511 (539)
+.++...|++++|+..++++++..+. .++. ..+..++..+. ..+++++|+..|++++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~- 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPN----------------FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR- 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC----------------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc-
Confidence 88899999999999999999887621 0111 13455666664 46789999999988874
Q ss_pred CCCCCHHHHHHHHH
Q 009255 512 GIAINKSTYMNLMN 525 (539)
Q Consensus 512 ~~~p~~~~~~~~l~ 525 (539)
+.|+......-+.
T Consensus 269 -l~~~~~~~~~~~k 281 (292)
T 1qqe_A 269 -LDKWKITILNKIK 281 (292)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHH
Confidence 5666554443333
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.33 E-value=3.5e-11 Score=100.65 Aligned_cols=136 Identities=7% Similarity=0.003 Sum_probs=103.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 009255 364 NILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVES 443 (539)
Q Consensus 364 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (539)
..+..+|.+.|++++|+..|++.++..+. +...+..++.++...|++++|+..|+++++.. +.+..++..++.++...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34888899999999999999999987433 77889999999999999999999999999753 44567888888887665
Q ss_pred CC--HHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009255 444 GR--LEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYM 521 (539)
Q Consensus 444 g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 521 (539)
|+ .+.+...+.++... +|....+...+.++...|++++|+..|+++++ +.|+.....
T Consensus 136 ~~~~~~~~~~~~~~~~~~-------------------~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSP-------------------TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHC---CC-------------------CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-------------------CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 54 34455555555421 23333667778888889999999999999996 678876544
Q ss_pred H
Q 009255 522 N 522 (539)
Q Consensus 522 ~ 522 (539)
.
T Consensus 195 ~ 195 (208)
T 3urz_A 195 T 195 (208)
T ss_dssp H
T ss_pred H
Confidence 3
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=5.1e-10 Score=96.76 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=140.8
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009255 309 AIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSF-KPDIVTCNILLSGLCREGILEKALKFFRSWI 387 (539)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 387 (539)
++..+++....+ .++..++..+..++...|++++|++++.+.+..+. ..+...+...+.++.+.|+++.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 34555666788888999999999999999877653 2367788888999999999999999999998
Q ss_pred HcCCCC-----ChhhHHHHHHH--HHccC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 388 LKGKAV-----DSVTYNTLISS--LCKER--RLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 388 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
+. .| +-.+...++.+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 44 24455555555 34344 899999999999764 56633333444488999999999999998776
Q ss_pred cCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009255 459 TGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNL 523 (539)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 523 (539)
..+...+ .....|+. .+..+++......|+ +|.++++++.+ ..|+.+-...+
T Consensus 240 ~~p~~~~---------k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~d~ 292 (310)
T 3mv2_B 240 DYYSVEQ---------KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIKHH 292 (310)
T ss_dssp HHHHTTT---------CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHHHH
T ss_pred hcccccc---------cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHHHH
Confidence 4200000 00000444 477688777777887 89999999998 57887655443
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=2.4e-11 Score=107.45 Aligned_cols=228 Identities=14% Similarity=0.059 Sum_probs=161.1
Q ss_pred hccCCHHHHHHHHHHHhhc-------CCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCCHhhHHHH
Q 009255 231 CCEKKLDEAYMLLNSASKR-------GYYLDEVSYGTLITGYFRDEKANRALKLWDEMKER------QI-MPSTFTYNAM 296 (539)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 296 (539)
...|+++.|...+++..+. ..+....++..+...|...|++++|+..++++... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766552 22334667888999999999999999999998754 11 2235678889
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC-----CC--CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhC------C-CCCCHHh
Q 009255 297 IWGLSQSGKTEQAIDMLNELLQS-----GM--IPDETTFNTIIHGFCSEGQVEKALQFHNKMVEK------S-FKPDIVT 362 (539)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 362 (539)
...+...|++++|...++++... +. +.....+..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11 223557888899999999999999999998864 1 1223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCC-ChhhHHHHHHHHHccCChHHH------HHHHHHHHhCCCCC
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILK-------GKAV-DSVTYNTLISSLCKERRLEDA------FGLLSEMEEKKLGP 428 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A------~~~~~~~~~~~~~~ 428 (539)
+..+..+|...|++++|...++++... ...+ ....|..+...+...+....+ ...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998864 1122 233444444444443333322 222222111 1112
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 429 DRYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
...++..++.++...|++++|.++++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2456778999999999999999999998865
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=1.6e-10 Score=89.13 Aligned_cols=130 Identities=14% Similarity=0.216 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALV 441 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (539)
.+..++..+...|++++|..+++++..... .+...+..++..+...|++++|...++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 456677778888888888888888877633 356677788888888888888888888887653 445667778888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 009255 442 ESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQK 511 (539)
Q Consensus 442 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 511 (539)
..|++++|.++++++++.. +.+...+..++.++...|++++|...++++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8999999999999888876 334558888888999999999999999988863
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=1.6e-10 Score=100.83 Aligned_cols=188 Identities=9% Similarity=-0.008 Sum_probs=140.7
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-C-CHHh
Q 009255 253 LDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPS---TFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMI-P-DETT 327 (539)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~ 327 (539)
.+...+..+...+...|++++|+..|+++....+. + ...+..+..++...|++++|+..|+++.+..+. | ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35677788888999999999999999999987543 3 567888999999999999999999999986432 2 2456
Q ss_pred HHHHHHHHhc--------CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 009255 328 FNTIIHGFCS--------EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYN 399 (539)
Q Consensus 328 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 399 (539)
+..+..++.. .|++++|...|+++++..+. +......+.. +..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 7777888888 99999999999999986321 2222222211 1111110 112256
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEKKLGP--DRYTYAAIHTALVES----------GRLEEAQKFTSIMVETG 460 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 460 (539)
.++..|...|++++|+..|+++++..... ....+..++.++... |++++|++.++++++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 77888999999999999999998753111 245677788888766 89999999999999987
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=3.9e-11 Score=119.43 Aligned_cols=155 Identities=11% Similarity=-0.035 Sum_probs=88.4
Q ss_pred HcCCCHHHHHHHHHHHH--------HCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 009255 301 SQSGKTEQAIDMLNELL--------QSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR 372 (539)
Q Consensus 301 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (539)
...|++++|++.++++. +.. +.+...+..+..++...|++++|...|+++++.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666655 221 2234455555556666666666666666666543 2245556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 009255 373 EGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKF 452 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 452 (539)
.|++++|+..|+++.+..+. +...|..++.++...|++++ +..|+++++.+ +.+...+..++.++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666655322 44555666666666666666 66666665432 22345555666666666666666666
Q ss_pred HHHHHHcC
Q 009255 453 TSIMVETG 460 (539)
Q Consensus 453 ~~~~~~~~ 460 (539)
++++++.+
T Consensus 557 ~~~al~l~ 564 (681)
T 2pzi_A 557 LDEVPPTS 564 (681)
T ss_dssp HHTSCTTS
T ss_pred HHhhcccC
Confidence 66665554
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.29 E-value=1.1e-08 Score=97.08 Aligned_cols=125 Identities=12% Similarity=0.024 Sum_probs=78.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-CChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE-RRLEDAFGLLSEMEEKKLGPDRYTYAAIHTA 439 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (539)
.+|...+....+.++.+.|..+|+++ .. ...+...|...+...... ++.+.|..+|+.+.+.. +.+...+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 34555566666667788888888877 32 222333443323222222 35788888888877642 2233444455666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 440 LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
....|+.+.|+.+++++. .....|...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~----------------------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE----------------------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC----------------------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667788888888887751 3345777777777777888888888877764
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.28 E-value=1.1e-09 Score=91.85 Aligned_cols=176 Identities=12% Similarity=0.043 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC----CHHHHHHHH
Q 009255 308 QAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREG----ILEKALKFF 383 (539)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 383 (539)
+|++.|++..+.| ++..+..+...+...+++++|..+|++..+.+ ++..+..+..+|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566777777653 66677777888888888999999998888764 66777778888877 6 899999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHh----cCCHHHHHHHHH
Q 009255 384 RSWILKGKAVDSVTYNTLISSLCK----ERRLEDAFGLLSEMEEKKLG-PDRYTYAAIHTALVE----SGRLEEAQKFTS 454 (539)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 454 (539)
++..+.+ ++..+..|...|.. .+++++|+..|++..+.+.. .+...+..++..|.. .+++++|.++++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9987753 67788888888887 88999999999999876421 126778888888888 789999999999
Q ss_pred HHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhc-C-----CHHHHHHHHHHHHHcC
Q 009255 455 IMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQ-G-----RYKDALQIFEETRQKG 512 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 512 (539)
++.+.+ .+..++..|+.+|... | ++++|+..|+++.+.|
T Consensus 154 ~A~~~~-------------------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS-------------------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS-------------------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC-------------------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999873 4455788888888754 3 8999999999999876
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=1.2e-10 Score=115.87 Aligned_cols=173 Identities=11% Similarity=-0.007 Sum_probs=112.8
Q ss_pred HccCCHHHHHHHHHHHH--------HcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 009255 266 FRDEKANRALKLWDEMK--------ERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCS 337 (539)
Q Consensus 266 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (539)
...|++++|++.+++.. ...+ .+...+..+...+...|++++|+..++++.+..+. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56677777777777776 3322 24566666777777777777777777777765332 55666667777777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 009255 338 EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGL 417 (539)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 417 (539)
.|++++|...|+++++.. +.+...+..+..+|.+.|++++ +..|+++.+.++. +...|..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 2356666777777777777777 7777777765332 556677777777777777777777
Q ss_pred HHHHHhCCCCCC-HhhHHHHHHHHHhcCC
Q 009255 418 LSEMEEKKLGPD-RYTYAAIHTALVESGR 445 (539)
Q Consensus 418 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 445 (539)
|+++.+. .|+ ...+..++.++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7777643 444 3455566666655555
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=5.3e-10 Score=99.07 Aligned_cols=194 Identities=12% Similarity=-0.039 Sum_probs=118.3
Q ss_pred HHhccCCHHHHHHHHHHHhhc----CCcc-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHH
Q 009255 229 TLCCEKKLDEAYMLLNSASKR----GYYL-DEVSYGTLITGYFRDEKANRALKLWDEMKERQIM-PS----TFTYNAMIW 298 (539)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~ 298 (539)
.|...|++++|...+.++... +.++ ...++..+...|...|++++|+..+++....... .+ ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666655554432 1111 1345666677777777777777777666543110 01 346677777
Q ss_pred HHHcC-CCHHHHHHHHHHHHHCCCCC-C----HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH------HhHHHH
Q 009255 299 GLSQS-GKTEQAIDMLNELLQSGMIP-D----ETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDI------VTCNIL 366 (539)
Q Consensus 299 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 366 (539)
+|... |++++|+..+++..+..... + ..++..+...+...|++++|...|+++.+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 78875 88888888888876532111 1 345677788888888888888888888875432221 145667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-Ch---hhHHHHHHHHH--ccCChHHHHHHHHHHH
Q 009255 367 LSGLCREGILEKALKFFRSWILKGKAV-DS---VTYNTLISSLC--KERRLEDAFGLLSEME 422 (539)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~---~~~~~l~~~~~--~~~~~~~A~~~~~~~~ 422 (539)
..++...|++++|...|++.....+.. +. ..+..++.++. ..+++++|+..|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 777888888888888888877642210 11 12344555554 4566888888877665
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.26 E-value=1.2e-10 Score=88.13 Aligned_cols=112 Identities=10% Similarity=0.062 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCC
Q 009255 396 VTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTP 475 (539)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (539)
..+...+..|.+.|++++|+..|+++++.. +.+..++..++.++...|++++|++.++++++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------- 77 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--------------- 77 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---------------
Confidence 457778888999999999999999988753 4467788889999999999999999999999987
Q ss_pred CCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 476 EEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 476 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
+.+..+|..++.+|...|++++|++.|+++++ +.|+.......++.|+
T Consensus 78 ---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 78 ---SKFIKGYIRKAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNCL 125 (126)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHC
T ss_pred ---hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHhc
Confidence 34455899999999999999999999999997 5788887777666654
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.25 E-value=3e-08 Score=94.09 Aligned_cols=378 Identities=9% Similarity=-0.052 Sum_probs=195.9
Q ss_pred cC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-hHHHH
Q 009255 23 KG-KLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGM-LEEAF 100 (539)
Q Consensus 23 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~ 100 (539)
.| +++.|+.+|+.+...- |. |+++.+..+|++.... .|+...|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 44 3666666666666541 22 6677777777777764 3567777777666655553 34455
Q ss_pred HHHHHHHhC-CC-CCChhhHHHHHHHHhc----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 009255 101 RLRKEMESL-KL-LPDVVTYNTLINRFFE----SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVR 174 (539)
Q Consensus 101 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 174 (539)
.+|+..... |. +.+...|...+..+.. +++.+.+.++|++.+......-...|......- +......+..++.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHH
Confidence 566655432 32 2345566666654432 345666777777776631110111222111111 1111112222221
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhcc--C-----CHHHHHHHHHHHh
Q 009255 175 NMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCE--K-----KLDEAYMLLNSAS 247 (539)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-----~~~~a~~~~~~~~ 247 (539)
+.. +.+..|..+++.+...-...+...|...+..-... + ..+.+..+|+++.
T Consensus 148 ~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 148 DTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp HHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 111 11222222222221100001222333333222111 0 0233455666666
Q ss_pred hcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-------
Q 009255 248 KRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSG------- 320 (539)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 320 (539)
... +..+..|...+..+.+.|+.+.|..++++.... + .+...|...... .+.+ +. ++.+...-
T Consensus 207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~-~e~~---~~---~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLV-MDEE---AV---YGDLKRKYSMGEAES 276 (493)
T ss_dssp HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHH-TTCT---HH---HHHHHHHTC------
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhh-cchh---HH---HHHHHHHHHhhccch
Confidence 542 334566666666666777777777777777666 2 233222221111 1111 11 12211110
Q ss_pred --C---CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCC
Q 009255 321 --M---IPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREG-ILEKALKFFRSWILKGKAVD 394 (539)
Q Consensus 321 --~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~ 394 (539)
. ......|...+....+.++.+.|..+|+++ +.. ..+..+|...+..-...+ +.+.|..+|+...+.. +-+
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~ 353 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDS 353 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTC
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCC
Confidence 0 011234555666666778899999999999 432 234555554333333333 6999999999998863 224
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
+..|...+......|+.+.|..+|+++. .....+...+..-...|+.+.+.+++++..+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566777887788999999999999973 2456677777666778999999999998875
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=2.7e-10 Score=95.19 Aligned_cols=127 Identities=9% Similarity=0.027 Sum_probs=96.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 009255 330 TIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKER 409 (539)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 409 (539)
.+..++...|++++|...|++.++.. +.+...+..+..++...|++++|...|+++++..+. ++..|..++.+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 37788889999999999999998875 347888889999999999999999999999887433 6778888888876655
Q ss_pred C--hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 410 R--LEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 410 ~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+ ...+...++... ...|....+...+.++...|++++|+..++++++..
T Consensus 137 ~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 137 EQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3 344556666554 223333445556777778899999999999999886
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=3e-09 Score=92.01 Aligned_cols=244 Identities=9% Similarity=0.001 Sum_probs=143.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 009255 18 DALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLE 97 (539)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 97 (539)
+-..-.|++..++.-...+ ...........+.++|...|++... ....|....+..+...+ . ++
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~-~~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-D-TK-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-T-TT--
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-c-cc--
Confidence 4455678888877733322 2122223334455777777777642 11223333444333333 2 22
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 009255 98 EAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGI-KPNAVTHNIMIKWYCKEGKIDKACKIVRNM 176 (539)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 176 (539)
++..|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777766554 45555666777778888888888888888766543 235667777778888888888888888888
Q ss_pred HHcCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHh
Q 009255 177 EENGFSP-----DCVTYNTLIDA--NCKAG--NMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSAS 247 (539)
Q Consensus 177 ~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (539)
.+. .| +..+...++.+ ....| ++.+|..+|+++... .|+..+...++.++.+.|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 765 45 24444555544 23333 778888888887654 3342233333346777777887777777655
Q ss_pred hcC---------CccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 009255 248 KRG---------YYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQ 285 (539)
Q Consensus 248 ~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 285 (539)
+.. -+.++.+...++......|+ +|.+++.++....
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 431 02244555445444444555 6666777766653
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.25 E-value=4e-11 Score=94.19 Aligned_cols=146 Identities=12% Similarity=0.012 Sum_probs=112.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 009255 331 IIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERR 410 (539)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 410 (539)
|...+...|++++|+..++...... +.+...+..+..+|.+.|++++|++.|+++++..+. ++.+|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 3445566788899998888887652 224556677888999999999999999999887433 77889999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHH
Q 009255 411 LEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKF-TSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKI 489 (539)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (539)
+++|+..|+++++.+ +-+..++..++.++.+.|++++|.+. ++++++.+ |.++.+|....
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~------------------P~~~~~~~l~~ 141 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF------------------PGSPAVYKLKE 141 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS------------------TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC------------------cCCHHHHHHHH
Confidence 999999999998753 33577888899999999998776654 68899887 33444788778
Q ss_pred HHHhhcCC
Q 009255 490 NEHCSQGR 497 (539)
Q Consensus 490 ~~~~~~g~ 497 (539)
..+...|+
T Consensus 142 ~ll~~~G~ 149 (150)
T 4ga2_A 142 QLLDCEGE 149 (150)
T ss_dssp HHHHTCCC
T ss_pred HHHHHhCc
Confidence 77777775
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=2.8e-10 Score=100.42 Aligned_cols=165 Identities=13% Similarity=-0.001 Sum_probs=135.7
Q ss_pred CCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-HHH
Q 009255 323 PDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTY-NTL 401 (539)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 401 (539)
.+...+..+...+...|++++|...|+++++.. +.+...+..+..++...|++++|...++++... .|+.... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 345566777888889999999999999998874 347788889999999999999999999988776 3444332 333
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC
Q 009255 402 ISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS 481 (539)
Q Consensus 402 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (539)
...+...++.++|+..++++.... +.+...+..++.++...|++++|.+.++++++.+ |+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-------------------p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-------------------LT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-------------------cc
Confidence 344667788889999999998764 4567888899999999999999999999999987 54
Q ss_pred ---hhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 482 ---SISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 482 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
...+..++.+|...|+.++|...|++.+.
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 44899999999999999999999998875
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.24 E-value=5.2e-09 Score=91.64 Aligned_cols=235 Identities=11% Similarity=0.047 Sum_probs=176.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH----hcC---
Q 009255 268 DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSG--KTEQAIDMLNELLQSGMIPDETTFNTIIHGF----CSE--- 338 (539)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 338 (539)
....++|+.++..++..++. +..+|+.-...+...| ++++++..++.+....+. +..+++.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 34446888999888887654 6677777777777788 899999999998886544 444444433333 344
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC------
Q 009255 339 GQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILE--KALKFFRSWILKGKAVDSVTYNTLISSLCKERR------ 410 (539)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 410 (539)
+++++++.+++.+++... -+..+|..-..++.+.|.++ ++..+++++++.++. |...|+.-.......++
T Consensus 124 ~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 788999999999998753 48888888888888888888 999999999988655 78888888888777776
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHH
Q 009255 411 LEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE-AQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKI 489 (539)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (539)
++++++.+++++... +-|...+..+...+.+.|+..+ ...+.+++.+.+.. .+.+..++..++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~---------------~~~s~~al~~la 265 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD---------------QVTSSFALETLA 265 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT---------------EESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC---------------CCCCHHHHHHHH
Confidence 899999999998764 5567888888888888887444 55666666554300 024555899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009255 490 NEHCSQGRYKDALQIFEETRQKGIAINKSTYMNL 523 (539)
Q Consensus 490 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 523 (539)
++|.+.|+.++|+++++++.+. +.|...-+-..
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~ 298 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDY 298 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHH
Confidence 9999999999999999999863 56766544433
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=1.3e-09 Score=92.35 Aligned_cols=189 Identities=12% Similarity=-0.021 Sum_probs=116.5
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-C-HHhHH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPD--ETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKP-D-IVTCN 364 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~ 364 (539)
+...+..+...+...|++++|+..|+++....+... ...+..+..++...|++++|...|+++++..+.. . ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556666777788888888888888876533211 3456667778888888888888888887653221 1 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHh-------------
Q 009255 365 ILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRY------------- 431 (539)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------- 431 (539)
.+..++...|.. .+ ..|..+...+...|++++|+..|+++++. .|+..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 445554432100 00 00111111222234444444444444432 12211
Q ss_pred -----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh----hhHHHHHHHHhhcCCHHHHH
Q 009255 432 -----TYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS----ISYSEKINEHCSQGRYKDAL 502 (539)
Q Consensus 432 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 502 (539)
....++..+...|++++|+..++++++.. |+. .++..++.+|.+.|++++|+
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------------------p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-------------------PDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------------TTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------------------cCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 11356778889999999999999999987 443 37899999999999999999
Q ss_pred HHHHHHHHcCCCCCH
Q 009255 503 QIFEETRQKGIAINK 517 (539)
Q Consensus 503 ~~~~~~~~~~~~p~~ 517 (539)
+.++++... .|+.
T Consensus 205 ~~~~~l~~~--~~~~ 217 (225)
T 2yhc_A 205 KVAKIIAAN--SSNT 217 (225)
T ss_dssp HHHHHHHHC--CSCC
T ss_pred HHHHHHHhh--CCCc
Confidence 999999874 4543
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.23 E-value=1.5e-10 Score=94.03 Aligned_cols=164 Identities=10% Similarity=0.011 Sum_probs=122.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-H
Q 009255 327 TFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISS-L 405 (539)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 405 (539)
.+......+...|++++|...++++++.. +.+...+..+..++...|++++|...++++.... |++..+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556667788899999999998887753 3367788888888999999999999998887653 344433332222 1
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhH
Q 009255 406 CKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISY 485 (539)
Q Consensus 406 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (539)
...++..+|+..++++.+.. +.+...+..++.++...|++++|++.++++++..+. ..+...+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~a~ 147 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLG----------------AQDGEVK 147 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----------------TTTTHHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc----------------cChHHHH
Confidence 22233455788899888653 335788888999999999999999999999988722 1124488
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 486 SEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 486 ~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
..++.++...|+.++|...|++.+.
T Consensus 148 ~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 148 KTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999998874
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=2.5e-10 Score=100.71 Aligned_cols=159 Identities=11% Similarity=0.032 Sum_probs=129.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHH-H
Q 009255 357 KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYA-A 435 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ 435 (539)
+.+...+..+...+...|++++|...++++....+. +...+..++.++...|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 445677788888999999999999999999987443 7778999999999999999999999998764 45654333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 009255 436 IHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAI 515 (539)
Q Consensus 436 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 515 (539)
....+...++.++|++.++++++.. |.+...+..++.+|...|++++|++.|+++++. .|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~------------------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p 250 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN------------------PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DL 250 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC------------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--cc
Confidence 3345677888999999999999997 344559999999999999999999999999984 57
Q ss_pred CH--HHHHHHHHHHHhcCCchhhcc
Q 009255 516 NK--STYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 516 ~~--~~~~~~l~~~~~~~~~~~~A~ 538 (539)
+. ......+..++...|+.++|+
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHH
Confidence 66 666666666777666677764
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.18 E-value=4.4e-10 Score=87.63 Aligned_cols=104 Identities=9% Similarity=-0.041 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCC
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSK 473 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 473 (539)
+...+..++..+...|++++|+..|++++... +.+...+..++.++...|++++|++.|+++++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~------------- 100 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG------------- 100 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------------
Confidence 44577888889999999999999999999763 4457788889999999999999999999999987
Q ss_pred CCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 474 TPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
|.+...|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 101 -----P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 101 -----KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp -----SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred -----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 33445999999999999999999999999998 467765
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=4.6e-10 Score=109.90 Aligned_cols=153 Identities=9% Similarity=-0.065 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 009255 304 GKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFF 383 (539)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (539)
|++++|...++++.+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5666666666666554322 45566666666666677777777776666653 234566666666666667777777666
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 009255 384 RSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVES---GRLEEAQKFTSIMVETG 460 (539)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 460 (539)
++..+... .+...+..++.++...|++++|...++++.+.. +.+...+..++.++... |++++|.+.++++++.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 66666532 245566666666666666666666666666542 23345566666666666 66666666666666665
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=1.5e-09 Score=83.58 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWC 91 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (539)
.|..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++...++. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 35555666666666666666666666553 334555566666666666666666666666554322 3445555555555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 009255 92 NAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDE 143 (539)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (539)
..|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666555432 22344455555555555555555555555443
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=6.9e-10 Score=90.00 Aligned_cols=164 Identities=7% Similarity=0.038 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-
Q 009255 11 VTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLING- 89 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 89 (539)
..+......+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...|+.+....+ +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 345667778888889999998888887764 55777888888888888999999888888776533 44333322212
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhH
Q 009255 90 WCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKP-NAVTHNIMIKWYCKEGKIDK 168 (539)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 168 (539)
+...+....|+..+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122233345677777776653 3356777777788888888888888888877764432 34567777777888888888
Q ss_pred HHHHHHHHHH
Q 009255 169 ACKIVRNMEE 178 (539)
Q Consensus 169 a~~~~~~~~~ 178 (539)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776543
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=7.5e-09 Score=86.63 Aligned_cols=177 Identities=12% Similarity=0.029 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----ChHHHHHHH
Q 009255 28 EVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAG----MLEEAFRLR 103 (539)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 103 (539)
+|+..|++..+.| ++.++..+...|...+++++|..+|++..+.+ ++..+..+...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777764 67778888888888888888888888887754 55667777777766 6 788888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhc----cCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHhHHHHHHH
Q 009255 104 KEMESLKLLPDVVTYNTLINRFFE----SGRSMEAFKLIDELDEHGIK-PNAVTHNIMIKWYCK----EGKIDKACKIVR 174 (539)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 174 (539)
++..+.+ +...+..|...|.. .+++++|+++|++..+.|.. .++..+..|..+|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887643 56677777777776 77888888888887776432 125677777777777 677888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHhhCCC
Q 009255 175 NMEENGFSPDCVTYNTLIDANCKA-G-----NMEEAFRMMDVMGRKGL 216 (539)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 216 (539)
+..+. +.+...+..|...|... | ++++|...|++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87765 23444566666666543 2 77788887777766653
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=6.5e-08 Score=84.67 Aligned_cols=218 Identities=10% Similarity=0.061 Sum_probs=150.1
Q ss_pred HHHHHHHHHHhhcCCccCHhhHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH----HcC---CCHH
Q 009255 237 DEAYMLLNSASKRGYYLDEVSYGTLITGYFRDE--KANRALKLWDEMKERQIMPSTFTYNAMIWGL----SQS---GKTE 307 (539)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 307 (539)
++|+.+.+.++..+.. +..+|+.-...+...+ +++++++.++.++..++. +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666655322 3444555555555555 777777777777776554 445554433333 334 6778
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHH--HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC------HHHH
Q 009255 308 QAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVE--KALQFHNKMVEKSFKPDIVTCNILLSGLCREGI------LEKA 379 (539)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 379 (539)
+++.+++++.+..+. +..++..-..++...|.++ ++++.++++++..+. |...|+.-..++...+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 888888888876544 6666666666666777777 888888888876543 77777776666666666 8889
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH-HHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 380 LKFFRSWILKGKAVDSVTYNTLISSLCKERRLED-AFGLLSEMEEKK--LGPDRYTYAAIHTALVESGRLEEAQKFTSIM 456 (539)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 456 (539)
++.+++++...+. |...|+.+...+.+.|+... +..+..++.+.+ -..+...+..++.++.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999888887554 88889888888888887444 555666655432 1345677888888999999999999999999
Q ss_pred HHc
Q 009255 457 VET 459 (539)
Q Consensus 457 ~~~ 459 (539)
.+.
T Consensus 285 ~~~ 287 (306)
T 3dra_A 285 KSK 287 (306)
T ss_dssp HHT
T ss_pred Hhc
Confidence 873
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=1.2e-08 Score=86.36 Aligned_cols=186 Identities=10% Similarity=0.018 Sum_probs=124.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HhHH
Q 009255 254 DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPS--TFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDE--TTFN 329 (539)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 329 (539)
++..+..+...+...|++++|+..|+++....+... ...+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 455666778889999999999999999998644311 357888899999999999999999999986543221 2344
Q ss_pred HHHHHHhc------------------CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009255 330 TIIHGFCS------------------EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGK 391 (539)
Q Consensus 330 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 391 (539)
.+..++.. .|++++|...|+++++..+ .+.......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHH----------HHHHHHH-----
Confidence 44545443 3455555555555554421 111111111000 0000000
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 392 AVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD----RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 392 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
......++..|...|++++|+..|+++++. .|+ ...+..++.++.+.|++++|++.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 001135677888999999999999999975 333 2567788999999999999999999998876
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=2.1e-09 Score=95.98 Aligned_cols=132 Identities=12% Similarity=0.005 Sum_probs=79.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCC---CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----Chh
Q 009255 327 TFNTIIHGFCSEGQVEKALQFHNKMVEKS---FKP--DIVTCNILLSGLCREGILEKALKFFRSWILKGKAV-----DSV 396 (539)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~ 396 (539)
++..+..+|...|++++|...|++.++.. -.+ ...++..+..+|.. |++++|+..+++........ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 44455555556666666666666554320 011 13455666666766 77777777777766541111 134
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEK----KLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++..++..|...|++++|+..|+++... +..+. ...+..++.++...|++++|...+++++ ..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence 5667777777888888888888777653 11111 1245556666777788888888888887 54
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=3e-09 Score=104.13 Aligned_cols=153 Identities=9% Similarity=-0.066 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHH
Q 009255 268 DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQF 347 (539)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (539)
.|++++|+..+++..+..+. +...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35667777777776655433 4566677777777777777777777777665332 455666677777777777777777
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc---CChHHHHHHHHHHHhC
Q 009255 348 HNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE---RRLEDAFGLLSEMEEK 424 (539)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 424 (539)
+++..+.. +.+...+..+..+|...|++++|.+.+++..+... .+...+..++.++... |++++|...++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77776653 23566667777777777777777777777766532 2455666677777777 7777777777777654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=9.9e-10 Score=98.12 Aligned_cols=203 Identities=11% Similarity=-0.022 Sum_probs=141.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHH
Q 009255 268 DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQF 347 (539)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (539)
.|++++|.+++++..+.... . .+...++++.|...|.++ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 35566677766666543111 1 011146677777766654 3456677888888887
Q ss_pred HHHHHhC----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHccCChHHHHHH
Q 009255 348 HNKMVEK----SFK-PDIVTCNILLSGLCREGILEKALKFFRSWILKGK---AV--DSVTYNTLISSLCKERRLEDAFGL 417 (539)
Q Consensus 348 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~ 417 (539)
|.+..+. +.. .-..++..+..+|...|++++|+..+++.+.... .+ -..++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7776643 110 1144778888899999999999999998875411 11 13467888999988 999999999
Q ss_pred HHHHHhCCC---CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHH
Q 009255 418 LSEMEEKKL---GP--DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINE 491 (539)
Q Consensus 418 ~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 491 (539)
|+++++... .+ ...++..++.++...|++++|++.++++++...... ..+... .+..++.+
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~~g~~ 204 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME-------------NYPTCYKKCIAQVLV 204 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-------------ChhHHHHHHHHHHHH
Confidence 999885411 11 145778899999999999999999999998642100 001122 67788888
Q ss_pred HhhcCCHHHHHHHHHHHH
Q 009255 492 HCSQGRYKDALQIFEETR 509 (539)
Q Consensus 492 ~~~~g~~~~A~~~~~~~~ 509 (539)
+...|++++|+..|++.+
T Consensus 205 ~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 205 QLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHTTCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 999999999999999998
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=8e-09 Score=86.80 Aligned_cols=146 Identities=8% Similarity=-0.111 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALV 441 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (539)
.+..+...+...|++++|...|+++. .|++..|..++.++...|++++|+..++++.+.. +.+...+..++.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556777888899999999998774 4577888999999999999999999999988753 445678888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 442 ESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 442 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
..|++++|++.++++++....+..... ........|.. ..+..++.+|...|++++|.+.|+++++ +.|+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDY---KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEEC---GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHH---HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 999999999999999987632110000 00000011223 4889999999999999999999999997 45643
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=2.9e-08 Score=87.99 Aligned_cols=168 Identities=9% Similarity=0.008 Sum_probs=125.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHH
Q 009255 330 TIIHGFCSEGQVEKALQFHNKMVEKSF-KPDI----VTCNILLSGLCREGILEKALKFFRSWILKGKA-VD----SVTYN 399 (539)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 399 (539)
..+..+...|++++|..+++...+... .|+. ..+..+...+...|++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999999887532 2221 13334666777788999999999999875322 22 22688
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC-----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCC
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEK-----KLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSK 473 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 473 (539)
.++.+|...|++++|+..++++.+. +..+. ..++..++.+|...|++++|+++++++++......
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--------- 230 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--------- 230 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC---------
Confidence 9999999999999999999998842 11122 34778899999999999999999999987542100
Q ss_pred CCCCCCCC-hhhHHHHHHHHhhcCC-HHHHHHHHHHHHH
Q 009255 474 TPEEIDPS-SISYSEKINEHCSQGR-YKDALQIFEETRQ 510 (539)
Q Consensus 474 ~~~~~~~~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 510 (539)
..+. ..+|..++.+|...|+ +++|.+.++++++
T Consensus 231 ----~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 231 ----SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ----BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 0123 3489999999999995 6999999999875
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.08 E-value=9.2e-10 Score=86.06 Aligned_cols=98 Identities=10% Similarity=-0.038 Sum_probs=76.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCC
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSK 473 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 473 (539)
+...+..++..+...|++++|+..|++++... +.+...+..++.++...|++++|++.++++++.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------- 85 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD------------- 85 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------
Confidence 44566777778888888888888888887653 4456777778888888888888888888888876
Q ss_pred CCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 474 TPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
|.+...|..++.+|...|++++|+..|+++++
T Consensus 86 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 -----IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445788888888888888888888888876
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=6.2e-09 Score=78.66 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=84.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTA 439 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (539)
...+......|.+.|++++|+..|++.++..+ .++..|..++.++...|++++|+..++++++.+ +.+...+..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 34667788889999999999999999888743 377888899999999999999999999998753 4457788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 009255 440 LVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+...|++++|++.|+++++.+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=5.5e-09 Score=79.25 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=94.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
...|..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|++.++++++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------- 68 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------------- 68 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------
Confidence 3467778888889999999999999988753 4457888889999999999999999999999987
Q ss_pred CCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHh
Q 009255 475 PEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIA------INKSTYMNLMNGLIK 529 (539)
Q Consensus 475 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------p~~~~~~~~l~~~~~ 529 (539)
+.+...|..++.++...|++++|+..|+++++ +. |+.......+..+..
T Consensus 69 ----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 69 ----PNFVRAYIRKATAQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH--hCcccCCchhHHHHHHHHHHHHH
Confidence 33445899999999999999999999999987 45 888777777665543
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.02 E-value=2.4e-09 Score=86.92 Aligned_cols=125 Identities=10% Similarity=0.127 Sum_probs=77.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCH--HH
Q 009255 372 REGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTA-LVESGRL--EE 448 (539)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 448 (539)
..|++++|...+++.....+ .+...|..++..|...|++++|+..|+++.+.. +.+...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 35666666666666665532 255666667777777777777777777766542 3345556666666 5566776 77
Q ss_pred HHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 449 AQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 449 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
|++.++++++.+ +.+...+..++.+|...|++++|...|+++++ ..|+..
T Consensus 100 A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 149 (177)
T 2e2e_A 100 TRAMIDKALALD------------------SNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTTS
T ss_pred HHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCc
Confidence 777777777765 22334677777777777777777777777776 344443
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=8.3e-08 Score=85.01 Aligned_cols=171 Identities=9% Similarity=0.006 Sum_probs=124.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--hh
Q 009255 327 TFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPD-----IVTCNILLSGLCREGILEKALKFFRSWILKGKA---VD--SV 396 (539)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~ 396 (539)
.+...+..+...|++++|.+.+...++...... ...+..+...+...|++++|...+++....... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556677788888888888888776532211 122344566677889999999999988764221 11 34
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEK--KLGPD----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPN 470 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 470 (539)
+++.++..|...|++++|+..++++.+. ..+.+ ..++..++.+|...|++++|+++++++++.....+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~------ 230 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN------ 230 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC------
Confidence 7888999999999999999999998732 11111 25788899999999999999999999987641100
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHhhcCCHHHH-HHHHHHHHH
Q 009255 471 TSKTPEEIDPS-SISYSEKINEHCSQGRYKDA-LQIFEETRQ 510 (539)
Q Consensus 471 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 510 (539)
.... ..+|..++.+|...|++++| ...+++++.
T Consensus 231 -------~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 231 -------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -------BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 0122 34889999999999999999 888988765
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.00 E-value=1.7e-08 Score=80.79 Aligned_cols=131 Identities=14% Similarity=0.085 Sum_probs=103.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTA 439 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (539)
...+..+...+...|++++|...|++...... .+...+..++.++...|++++|+..+++..+.. +.+..++..++.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34566777788888999999999998887633 367788888889999999999999999988753 4457788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhH--HHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 440 LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISY--SEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+...|++++|.++++++++.. +.+...+ ...+..+...|++++|++.+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~------------------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK------------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999887 2333455 3444457788999999999887654
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.98 E-value=2.7e-08 Score=84.93 Aligned_cols=140 Identities=10% Similarity=-0.020 Sum_probs=105.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD--RYTYAAIHTA 439 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 439 (539)
....+..++...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..++..++.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 44456777888999999999998887653 333356666778889999999999998665421 121 3467788999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC-h-hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 440 LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS-S-ISYSEKINEHCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
+...|++++|+++|+++..... .|. . ..+...+.++.+.|+.++|...|+++.. ..|+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~-----------------~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~- 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPA-----------------GEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE- 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTT-----------------TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC-
T ss_pred HHHCCCHHHHHHHHHHHhcCCC-----------------CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-
Confidence 9999999999999999985431 143 3 3788889999999999999999999998 4688
Q ss_pred HHHHHHH
Q 009255 518 STYMNLM 524 (539)
Q Consensus 518 ~~~~~~l 524 (539)
......|
T Consensus 241 ~~~~~aL 247 (282)
T 4f3v_A 241 PKVAAAL 247 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.97 E-value=1.4e-09 Score=84.58 Aligned_cols=97 Identities=13% Similarity=-0.009 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
...+..++..+...|++++|+..|+++...+ +.+...+..++.++...|++++|++.++++++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 82 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-------------- 82 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------
Confidence 3455666777777788888888888777643 3456667777778888888888888888888776
Q ss_pred CCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 475 PEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 475 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
|.+...+..++.+|...|++++|+..|+++++
T Consensus 83 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 83 ----INEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp ----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344777788888888888888888888776
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=1.1e-08 Score=78.45 Aligned_cols=112 Identities=9% Similarity=0.057 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
...+..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|++.++++++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 80 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------------- 80 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------
Confidence 4456666667777777777777777776542 3345666667777777777777777777777765
Q ss_pred CCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009255 475 PEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 475 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 527 (539)
+.+...+..++.++...|++++|++.++++++ ..|+.......++.+
T Consensus 81 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 81 ----PTFIKGYTRKAAALEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRC 127 (133)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGTHHHHHHHHH
T ss_pred ----CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCchHHHHHHHHH
Confidence 23344677777777777777777777777765 345554444444433
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=4.9e-08 Score=81.90 Aligned_cols=128 Identities=12% Similarity=-0.043 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 009255 328 FNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCK 407 (539)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (539)
+..+...+...|++++|...|+++. .|+..++..+..+|...|++++|...+++..... +.+...|..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445566677788888888777663 4467777788888888888888888888877763 2356677788888888
Q ss_pred cCChHHHHHHHHHHHhCC--------------CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 408 ERRLEDAFGLLSEMEEKK--------------LGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 408 ~~~~~~A~~~~~~~~~~~--------------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.|++++|+..|+++.+.. ..|+ ..++..++.++...|++++|.+.++++++..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888887642 1111 2677888899999999999999999999887
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=1.7e-08 Score=76.28 Aligned_cols=112 Identities=13% Similarity=0.212 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|..+++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------- 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------
Confidence 3456666666677777777777777766542 3345566666777777777777777777777665
Q ss_pred CCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009255 475 PEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 475 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 527 (539)
+.+...+..++.++...|++++|...++++++ ..|+.......++.+
T Consensus 74 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 74 ----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGNA 120 (125)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred ----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 23444677777777777777777777777776 345555444444433
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.95 E-value=9.7e-09 Score=77.76 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCC
Q 009255 396 VTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTP 475 (539)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (539)
..+..++..+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|++.++++++.....
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~------------ 75 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET------------ 75 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc------------
Confidence 457788999999999999999999999753 4457788899999999999999999999999876210
Q ss_pred CCCCCC----hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009255 476 EEIDPS----SISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYM 521 (539)
Q Consensus 476 ~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 521 (539)
.+. ..+|..++.++...|++++|++.|++.++ ..||..+..
T Consensus 76 ---~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 76 ---RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred ---chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 011 12678899999999999999999999997 457765544
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.94 E-value=5e-07 Score=79.86 Aligned_cols=241 Identities=12% Similarity=0.077 Sum_probs=166.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcC-C-CHHH
Q 009255 267 RDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSG-KTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSE-G-QVEK 343 (539)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 343 (539)
..+..++|+++++.++..++. +..+|+.-...+...| .+++++..++.+....+. +..+++.-..++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 445557888889888887655 6677777777777777 589999999999887554 666666655555555 5 7889
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC-----
Q 009255 344 ALQFHNKMVEKSFKPDIVTCNILLSGLCREGILE--------KALKFFRSWILKGKAVDSVTYNTLISSLCKERR----- 410 (539)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 410 (539)
++.+++.+++... -+..+|..-..++.+.|.++ ++++.++++++..+. |...|+.....+...++
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 9999999988753 37777776666666655555 899999999988555 88889988888888776
Q ss_pred --hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcCCCCccccc
Q 009255 411 --LEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRL--------------------EEAQKFTSIMVETGKINHQVVQ 468 (539)
Q Consensus 411 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~~~~~~~~~ 468 (539)
++++++.+++++... +-|...+..+...+.+.|+. .+..+....+....
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 292 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP-------- 292 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C--------
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc--------
Confidence 688999999988753 44567777776677666654 11111111111100
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 469 PNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
.......++..++..++++|...|+.++|.++++.+.+. +.|-..-|-....
T Consensus 293 ----~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~ 344 (349)
T 3q7a_A 293 ----LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRR 344 (349)
T ss_dssp ----CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHH
T ss_pred ----cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHH
Confidence 000111355558899999999999999999999998753 5666555544433
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.94 E-value=1.2e-08 Score=84.86 Aligned_cols=160 Identities=11% Similarity=-0.002 Sum_probs=108.7
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHccCC
Q 009255 336 CSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILK----GK-AVDSVTYNTLISSLCKERR 410 (539)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 410 (539)
...|++++|.+.++.+... ......++..+..++...|++++|...+++.... +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3467777777755444432 2235667777788888888888888888777652 11 1123467778888888899
Q ss_pred hHHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh--
Q 009255 411 LEDAFGLLSEMEEK----KLGP--DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-- 482 (539)
Q Consensus 411 ~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 482 (539)
+++|...+++..+. +-.| ...++..++.++...|++++|.+.++++++...... .+..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~ 147 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--------------DQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--------------chHHHH
Confidence 99998888887653 1111 134566788888899999999999998876431100 1111
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 483 ISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 483 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.++..++.++...|++++|.+.++++++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2567889999999999999999998876
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=4.3e-07 Score=80.38 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=118.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCC-CCH----HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHhHHH
Q 009255 296 MIWGLSQSGKTEQAIDMLNELLQSGMI-PDE----TTFNTIIHGFCSEGQVEKALQFHNKMVEKSFK-PD----IVTCNI 365 (539)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 365 (539)
.+..+...|++++|..++++....... |+. ..+..+...+...+++++|...++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355677788888888888887764221 221 12334666677778899999999988874222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC-HhhHH
Q 009255 366 LLSGLCREGILEKALKFFRSWILK-----GKAV-DSVTYNTLISSLCKERRLEDAFGLLSEMEEK----KLGPD-RYTYA 434 (539)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~ 434 (539)
+..+|...|++++|...++++.+. +..+ ...++..++.+|...|++++|+..++++.+. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999999999999888742 1111 1236788999999999999999999988753 22222 56788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 009255 435 AIHTALVESGR-LEEAQKFTSIMVETG 460 (539)
Q Consensus 435 ~l~~~~~~~g~-~~~A~~~~~~~~~~~ 460 (539)
.++.++...|+ +++|.+.+++++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89999999994 699999999987643
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.92 E-value=2.9e-08 Score=76.00 Aligned_cols=120 Identities=13% Similarity=-0.004 Sum_probs=95.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 009255 357 KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAI 436 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 436 (539)
+.+...+..+...+...|++++|...++++..... .+...+..++.++...|++++|+..++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 34566777888888889999999999988887633 367788888888889999999999999888753 4456788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHhhcCC
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHCSQGR 497 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 497 (539)
+.++...|++++|++.++++++.. |+. ..+..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-------------------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-------------------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------------------GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-------------------CCchHHHHHHHHHHHHhcC
Confidence 889999999999999999998886 444 477888888776654
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=2.4e-08 Score=90.12 Aligned_cols=133 Identities=9% Similarity=-0.036 Sum_probs=108.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------hhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 009255 359 DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVD--------------SVTYNTLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
+...+..+...|.+.|++++|...|++++....... ...|..++.+|...|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455667777778888888888888888777633311 478899999999999999999999999976
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHH-HH
Q 009255 425 KLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDA-LQ 503 (539)
Q Consensus 425 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~ 503 (539)
. +.+...+..++.++...|++++|++.|+++++.. |.+..++..++.++...|++++| ..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY------------------PNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4467888899999999999999999999999987 33445899999999999999999 55
Q ss_pred HHHHHHH
Q 009255 504 IFEETRQ 510 (539)
Q Consensus 504 ~~~~~~~ 510 (539)
.|++|.+
T Consensus 287 ~~~~~~~ 293 (336)
T 1p5q_A 287 LYANMFE 293 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6777654
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.92 E-value=2.1e-08 Score=76.42 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCC
Q 009255 396 VTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTP 475 (539)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (539)
..+..++..+...|++++|+..++++.... +.+...+..++.++...|++++|.+.++++++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------- 76 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--------------- 76 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---------------
Confidence 345555556666666666666666665432 2344555566666666666666666666666654
Q ss_pred CCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 476 EEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 476 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
+.+...+..++.++...|++++|...++++++. .|+.......++.++
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 77 ---PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAE 124 (131)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred ---ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHH
Confidence 223346666666666666666666666666652 354443333444333
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.91 E-value=2e-08 Score=78.20 Aligned_cols=100 Identities=11% Similarity=0.012 Sum_probs=78.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 009255 359 DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHT 438 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 438 (539)
+...+..+...+.+.|++++|+..|++++...+. ++..|..++.+|...|++++|+..|+++.+.. +.+...+..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 4456777777888888888888888888877433 67788888888888888888888888888653 334567778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 009255 439 ALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++...|++++|++.|+++++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888876
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.90 E-value=4.4e-08 Score=74.66 Aligned_cols=120 Identities=12% Similarity=-0.000 Sum_probs=94.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 009255 359 DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHT 438 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 438 (539)
+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|+..++++.+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45567777788888888888888888888763 2366778888888888899999999998888653 345677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCH
Q 009255 439 ALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRY 498 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 498 (539)
++...|++++|.++++++++.. +.+...+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~------------------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD------------------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC------------------ccchHHHHHHHHHHHHHhcC
Confidence 8899999999999999998886 33445888888888877765
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=4.4e-08 Score=73.05 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
...+..++..+...|++++|...++++.... +.+...+..++.++...|++++|.+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------- 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------------- 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------------
Confidence 3456667777778888888888888877643 3356677777888888888888888888888876
Q ss_pred CCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009255 475 PEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 475 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 527 (539)
+.+...+..++.++...|++++|.+.++++++ ..|+.......+..+
T Consensus 69 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 69 ----PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNPQLKEGLQNM 115 (118)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCHHHHHHHHHh
Confidence 23445788888888888888888888888886 456665554444433
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=1.2e-08 Score=79.56 Aligned_cols=111 Identities=16% Similarity=0.012 Sum_probs=89.5
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 009255 347 FHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL 426 (539)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 426 (539)
.+++++... +.+...+..+...+...|++++|...|++++...+ .++..|..++.++...|++++|+..|++++...
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 455555542 23556777788888999999999999999888743 377788899999999999999999999998753
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 427 GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.+...+..++.++...|++++|++.++++++..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3356778888999999999999999999999886
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.89 E-value=7.9e-08 Score=72.48 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=87.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTA 439 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (539)
...+..+...+...|++++|.+.++++.... +.+...+..++..+...|++++|+..++++.+.. +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5567777778888888888888888887763 2356677888888888888888888888887653 4456677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcC
Q 009255 440 LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQG 496 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 496 (539)
+...|++++|.++++++++.. +.+...+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD------------------PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHhcc
Confidence 888888888888888888876 233446777776665543
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=2.3e-07 Score=82.17 Aligned_cols=168 Identities=11% Similarity=0.031 Sum_probs=117.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-----HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC---CCC--HH
Q 009255 292 TYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDE-----TTFNTIIHGFCSEGQVEKALQFHNKMVEKSF---KPD--IV 361 (539)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 361 (539)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777888888877776664322111 1233455566778889999998888875321 111 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHhCC----CCCC-H
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILK-GKAVD-----SVTYNTLISSLCKERRLEDAFGLLSEMEEKK----LGPD-R 430 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-~ 430 (539)
+++.+..+|...|++++|...++++.+. ...|+ ..++..++.+|...|++++|+..++++.+.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999999888732 01112 2478888999999999999999999887531 1111 5
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHHHc
Q 009255 431 YTYAAIHTALVESGRLEEA-QKFTSIMVET 459 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 459 (539)
.++..++.++...|++++| ...+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778889999999999999 7778887754
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.88 E-value=2.4e-09 Score=88.80 Aligned_cols=144 Identities=8% Similarity=-0.024 Sum_probs=95.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC-C--------------CHhhHHHH
Q 009255 372 REGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLG-P--------------DRYTYAAI 436 (539)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--------------~~~~~~~l 436 (539)
..|+++.+.+.|+...... ......+..++..+...|++++|+..|+++++.... | ...++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3455555555554322210 112334556666677777777777777777654211 1 02677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
+.++...|++++|++.++++++.. +.+..++..++.+|...|++++|+..|+++++ +.|+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~ 154 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID------------------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPN 154 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC------------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCC
Confidence 889999999999999999999987 34455899999999999999999999999997 4688
Q ss_pred HHHHHHHHHHHHhcCCchhh
Q 009255 517 KSTYMNLMNGLIKRRKSISK 536 (539)
Q Consensus 517 ~~~~~~~l~~~~~~~~~~~~ 536 (539)
.......+..+....++.++
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 77777777766655444443
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.88 E-value=2.7e-08 Score=79.68 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|.+.++++++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------------- 77 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------------- 77 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 3457788889999999999999999998753 4467888899999999999999999999999987
Q ss_pred CCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCchhhcc
Q 009255 475 PEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGL--IKRRKSISKAV 538 (539)
Q Consensus 475 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~A~ 538 (539)
+.+...|..++.++...|++++|.+.++++++. .|+.......+..+ +...+++++|+
T Consensus 78 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 78 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344559999999999999999999999999984 56554433333222 33445577775
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.88 E-value=1.7e-08 Score=77.88 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=73.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCC
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSK 473 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 473 (539)
+...+..++..+...|++++|+..|++++... +.+...+..++.++...|++++|...++++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------- 73 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD------------- 73 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------
Confidence 55667777777778888888888888777653 3346677777778888888888888888888776
Q ss_pred CCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 474 TPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+.+...|..++.+|...|++++|+..|+++++
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23344778888888888888888888888776
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=1.2e-08 Score=89.49 Aligned_cols=194 Identities=10% Similarity=0.027 Sum_probs=111.3
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS 368 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (539)
+...+..+...+...|++++|+..|+++....+. +...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455666666777777777777777777665332 56666677777777777777777777777653 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 009255 369 GLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE 448 (539)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (539)
+|...|++++|...|+++...++. +...+...+...... .++.. +........+.+......+...+ .|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 777777777777777777654221 111111122221111 11111 11122223334444433333322 577777
Q ss_pred HHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 009255 449 AQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQ-GRYKDALQIFEETRQ 510 (539)
Q Consensus 449 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 510 (539)
|.+.++++++.. |+.. ....+...+.+. +++++|.++|+++.+
T Consensus 154 A~~~~~~al~~~-------------------p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-------------------EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-------------------SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-------------------cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777777664 4443 444455555554 667777777777654
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=8.4e-08 Score=74.97 Aligned_cols=114 Identities=8% Similarity=0.026 Sum_probs=89.8
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccC
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQP 469 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 469 (539)
+...+..++..+...|++++|+..|++..+. .|+ ...+..++.++...|++++|++.++++++..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------- 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--------- 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---------
Confidence 4556777888888888888888888888854 455 5677788888889999999999999998886
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009255 470 NTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIK 529 (539)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 529 (539)
+.+...|..++.+|...|++++|...|+++++ +.|+.......+..+..
T Consensus 96 ---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 96 ---------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRNISG 144 (148)
T ss_dssp ---------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHC
T ss_pred ---------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHh
Confidence 33455888899999999999999999999987 46776666666555543
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=2.3e-06 Score=75.73 Aligned_cols=178 Identities=8% Similarity=-0.066 Sum_probs=130.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-C-
Q 009255 18 DALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLG-WLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNA-G- 94 (539)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 94 (539)
....+.+..++|+.+++.++..+ |-+..+|+.-..++...| +++++++.++.+...+++ +..+|+.-..++.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 33444556678999999999886 557778888888888888 599999999999988765 777888777777666 6
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 009255 95 MLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSM--------EAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGK- 165 (539)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 165 (539)
++++++.+++++.+.. +.+..+|+.-.-.+...+.++ ++++.++++.+..+. |..+|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 8889999999998765 456777777666655555555 788888888776444 77777777777766665
Q ss_pred ------HhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 009255 166 ------IDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGN 200 (539)
Q Consensus 166 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (539)
++++++.+++..... +-|...|+-+-..+.+.|.
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777777653 4466667665555555443
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=2.9e-08 Score=87.16 Aligned_cols=194 Identities=12% Similarity=0.062 Sum_probs=116.3
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 009255 8 PDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLI 87 (539)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (539)
.+...+..+...+.+.|++++|+..|++..... +.+...+..+..++.+.|++++|...++...+..+. +...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 355677778888888888888888888888774 447778888888888888888888888888876543 667778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 009255 88 NGWCNAGMLEEAFRLRKEMESLKLLPDV-VTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKI 166 (539)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (539)
.++...|++++|...|++..+.. |+. ..+...+....+ ...+.. +........+.+......+... ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 88888888888888888876542 211 111111111111 111111 1122222233344443333332 25667
Q ss_pred hHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 009255 167 DKACKIVRNMEENGFSPDC-VTYNTLIDANCKA-GNMEEAFRMMDVMGR 213 (539)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 213 (539)
++|.+.++...+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777776666554 2332 2223333333333 456667777766544
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.85 E-value=1.5e-08 Score=81.04 Aligned_cols=99 Identities=8% Similarity=-0.027 Sum_probs=46.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTA 439 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (539)
...+..+...+...|++++|+..|++.+..... +...|..+..+|...|++++|+..++++++.. +.+...+..++.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334444444555555555555555555444211 34444444455555555555555555544332 2223444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 009255 440 LVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+...|++++|++.++++++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 555555555555555554443
No 153
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.85 E-value=2.6e-08 Score=74.64 Aligned_cols=100 Identities=10% Similarity=-0.091 Sum_probs=81.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPE 476 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (539)
.+..++..+...|++++|+..++++++.. +.+...+..++.++...|++++|+..++++++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---------------- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 46667788889999999999999998753 4467788889999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 477 EIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 477 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
|.+...+..++.+|...|++++|+..++++++ ..|+.
T Consensus 82 --P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~ 118 (121)
T 1hxi_A 82 --PKDIAVHAALAVSHTNEHNANAALASLRAWLL--SQPQY 118 (121)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCC
Confidence 33445889999999999999999999999986 45654
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.83 E-value=2.3e-07 Score=79.15 Aligned_cols=188 Identities=10% Similarity=-0.036 Sum_probs=135.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHhhHHHH-------HHHHHcCCCHHHHHHHHHHHHHCCCCCC---------------
Q 009255 267 RDEKANRALKLWDEMKERQIMPSTFTYNAM-------IWGLSQSGKTEQAIDMLNELLQSGMIPD--------------- 324 (539)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 324 (539)
..++...|.+.|.++....+. ....|..+ ..++...++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578888888888888887554 56677666 3445444445555555544433 1111
Q ss_pred -------HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--h
Q 009255 325 -------ETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVD--S 395 (539)
Q Consensus 325 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 395 (539)
..........+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345667788999999999999888754 433366667778899999999999998665431 111 2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 396 VTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD--RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..+..+..++...|++++|+..|++.......|. .......+.++.+.|+.++|..+|+++...+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3678889999999999999999999985433254 3466778889999999999999999999987
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.82 E-value=2.4e-08 Score=79.57 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=66.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 430 RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
..++..++.++...|++++|+..++++++.+ |.+..+|..++.+|...|++++|+..|++++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE------------------ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC------------------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 4577788889999999999999999999987 3344599999999999999999999999999
Q ss_pred HcCCCCCHH-HHHHHHHHHHhc
Q 009255 510 QKGIAINKS-TYMNLMNGLIKR 530 (539)
Q Consensus 510 ~~~~~p~~~-~~~~~l~~~~~~ 530 (539)
+ +.|+.. .+...+..+...
T Consensus 125 ~--l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 125 R--NHPAAASVVAREMKIVTER 144 (162)
T ss_dssp H--HCGGGHHHHHHHHHHHHHH
T ss_pred h--cCCCCHHHHHHHHHHHHHH
Confidence 7 578876 666666655443
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=3.8e-08 Score=79.80 Aligned_cols=122 Identities=8% Similarity=0.060 Sum_probs=92.4
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHccCCh--H
Q 009255 336 CSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISS-LCKERRL--E 412 (539)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 412 (539)
...|++++|...++..++.. +.+...+..+..+|...|++++|...|+++....+ .+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45677888888888877764 34677888888888888889999888888887633 366677778887 7788888 8
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 413 DAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+|+..++++.+.. +.+...+..++.++...|++++|.+.++++++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8999888888653 3346777788888888899999999999988886
No 157
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=4.1e-08 Score=88.62 Aligned_cols=141 Identities=11% Similarity=-0.001 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----------------HhhHHHHH
Q 009255 374 GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD----------------RYTYAAIH 437 (539)
Q Consensus 374 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~ 437 (539)
+++++|...|+...... +.+...+..++..+...|++++|+..|+++++.. |+ ..++..++
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHH
Confidence 44555555554443321 1145678889999999999999999999999763 33 47888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 438 TALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
.++.+.|++++|++.++++++.. +.+..+|..++.+|...|++++|+..|+++++ +.|+.
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~ 263 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNN 263 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
Confidence 99999999999999999999997 34455999999999999999999999999998 57888
Q ss_pred HHHHHHHHHHHhcCCchhhc
Q 009255 518 STYMNLMNGLIKRRKSISKA 537 (539)
Q Consensus 518 ~~~~~~l~~~~~~~~~~~~A 537 (539)
......++.++...+++++|
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666667665
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.81 E-value=3.4e-06 Score=74.29 Aligned_cols=222 Identities=12% Similarity=0.047 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCC--
Q 009255 272 NRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGK----------TEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEG-- 339 (539)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 339 (539)
++|+.++..++..++. +..+|+.=-..+...+. +++++.+++.+....+. +..+|+.-..++...+
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcc
Confidence 3677777777766443 44444433333222222 56777888877776443 6666666555666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc----------
Q 009255 340 QVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGI-LEKALKFFRSWILKGKAVDSVTYNTLISSLCKE---------- 408 (539)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 408 (539)
++++++.+++.+++... -|..+|+.-..++...|. +++++..++++++..+. |...|+.....+...
T Consensus 125 ~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccc
Confidence 47888888888888753 377777777777777777 58888888888887544 777787776666554
Q ss_pred ----CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCcccccCCCCC
Q 009255 409 ----RRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVES-----------GRLEEAQKFTSIMVETGKINHQVVQPNTSK 473 (539)
Q Consensus 409 ----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 473 (539)
+.++++++.+.+++... +-|...|..+-..+... +.++++++.+.++++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~------------- 268 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE------------- 268 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-------------
Confidence 45788888888888653 44566666555555544 45789999999999987
Q ss_pred CCCCCCCChhhHHHHHHHH-----hhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009255 474 TPEEIDPSSISYSEKINEH-----CSQGRYKDALQIFEETRQKGIAINKSTY 520 (539)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 520 (539)
|+. .|..+..++ ...|..+++...+.++++ +.|-...+
T Consensus 269 ------pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~ 311 (331)
T 3dss_A 269 ------PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY 311 (331)
T ss_dssp ------TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHH
T ss_pred ------ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhH
Confidence 766 444333322 246888999999999997 56765543
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.81 E-value=1.1e-07 Score=72.27 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=84.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 398 YNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR---YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 398 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
+..++..+...|++++|+..|+++.+.. +.+. ..+..++.++...|++++|++.++++++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------------- 69 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------------- 69 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--------------
Confidence 4556677788888999998888888643 2222 467778888889999999999999998886
Q ss_pred CCCCCCC----hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009255 475 PEEIDPS----SISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRR 531 (539)
Q Consensus 475 ~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 531 (539)
|+ ..++..++.++...|++++|...|+++++. .|+..........+-...
T Consensus 70 -----p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 70 -----PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGSDAARVAQERLQSIR 123 (129)
T ss_dssp -----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHC
T ss_pred -----CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHH
Confidence 43 347888899999999999999999999873 577665555555444433
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.79 E-value=1.1e-08 Score=76.25 Aligned_cols=110 Identities=9% Similarity=0.020 Sum_probs=79.8
Q ss_pred ccCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhh
Q 009255 407 KERRLEDAFGLLSEMEEKKL--GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSIS 484 (539)
Q Consensus 407 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (539)
..|++++|+..|+++++.+. +.+..++..++.++...|++++|++.++++++.. |.+...
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~ 63 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------------------PNHQAL 63 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCchHH
Confidence 35788899999999986531 2235677888899999999999999999999987 334458
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhh
Q 009255 485 YSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSISK 536 (539)
Q Consensus 485 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 536 (539)
+..++.++...|++++|+..++++++ ..|+......+..++..-.+.+++
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKIIA--ETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999987 356666665555555443333443
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.77 E-value=1.4e-07 Score=69.45 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCC
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSK 473 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 473 (539)
+...+..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|.+.++++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------- 70 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI------------- 70 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 45567778888888888888888888887653 4456777788888888899999999999888876
Q ss_pred CCCCCCC--ChhhHHHHHHHHhhc-CCHHHHHHHHHHHHHc
Q 009255 474 TPEEIDP--SSISYSEKINEHCSQ-GRYKDALQIFEETRQK 511 (539)
Q Consensus 474 ~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 511 (539)
+. +...|..++.++... |++++|++.++++++.
T Consensus 71 -----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 -----EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp -----CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred -----cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 23 455888888888899 9999999999988864
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=9.4e-08 Score=72.27 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=80.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCC----HhhH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK--LGPD----RYTY 433 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~~~ 433 (539)
...+..+...+.+.|++++|+..|+++++..+. +...|..++.+|...|++++|+..++++++.. ..++ ..++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345667888889999999999999998887433 67788889999999999999999999887542 1111 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..++.++...|++++|++.|+++++..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 778889999999999999999999876
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.77 E-value=9.4e-08 Score=79.40 Aligned_cols=158 Identities=9% Similarity=-0.113 Sum_probs=96.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC-CCCHHhHHHHHHHHHhcCCH
Q 009255 302 QSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEK----SF-KPDIVTCNILLSGLCREGIL 376 (539)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 376 (539)
..|++++|.+.++.+.. .+......+..+...+...|++++|...+++..+. +. .....++..+..+|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664433322 12223445666666666677777777766666541 11 12344566677777788888
Q ss_pred HHHHHHHHHHHHc---CC-CC--ChhhHHHHHHHHHccCChHHHHHHHHHHHhCC---CCCC--HhhHHHHHHHHHhcCC
Q 009255 377 EKALKFFRSWILK---GK-AV--DSVTYNTLISSLCKERRLEDAFGLLSEMEEKK---LGPD--RYTYAAIHTALVESGR 445 (539)
Q Consensus 377 ~~A~~~~~~~~~~---~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~ 445 (539)
++|...+++.... .. .| ....+..+...+...|++++|...+++..... -.+. ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888887776653 11 11 12356777788888888888888888776421 0111 2345677788888899
Q ss_pred HHHHHHHHHHHHHcC
Q 009255 446 LEEAQKFTSIMVETG 460 (539)
Q Consensus 446 ~~~A~~~~~~~~~~~ 460 (539)
+++|.+.++++++..
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888887653
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=3.6e-07 Score=67.96 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=76.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 009255 359 DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHT 438 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 438 (539)
....+..+...+...|++++|...+++.....+ .+...+..++.++...|++++|...++++.+.. +.+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345666777777888888888888888877632 366677788888888888888888888887653 335667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 009255 439 ALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++...|++++|.+.++++++..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 8888888888888888888776
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.75 E-value=1.7e-07 Score=77.45 Aligned_cols=132 Identities=10% Similarity=-0.071 Sum_probs=94.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHccCChHHHHHHHHHHHh
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDS----------------VTYNTLISSLCKERRLEDAFGLLSEMEE 423 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 423 (539)
...+..+...+...|++++|...|++....... ++ ..|..++.+|...|++++|+..++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344555666667777777777777777664222 22 6788888999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHH-
Q 009255 424 KKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDAL- 502 (539)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~- 502 (539)
.. +.+..++..++.++...|++++|++.++++++.. +.+..++..++.++...|+.+++.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN------------------PNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHHHHHHC---
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 4467788889999999999999999999999987 334458888998988888888887
Q ss_pred HHHHHHHHc
Q 009255 503 QIFEETRQK 511 (539)
Q Consensus 503 ~~~~~~~~~ 511 (539)
..+.++...
T Consensus 178 ~~~~~~f~~ 186 (198)
T 2fbn_A 178 LTFGGMFDK 186 (198)
T ss_dssp ---------
T ss_pred HHHHHHhcc
Confidence 556666543
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=1.7e-07 Score=72.56 Aligned_cols=100 Identities=13% Similarity=-0.026 Sum_probs=79.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 009255 359 DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHT 438 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 438 (539)
+...+..+...+.+.|++++|...|+++....+ .+...|..++.++...|++++|+..|++++... +.+...+..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 445566677788888999999999988887643 367788888888888999999999998888653 334567778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 009255 439 ALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++...|++++|++.++++++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888999999999999888876
No 167
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.6e-07 Score=69.04 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=75.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTA 439 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (539)
...+......+.+.|++++|...|++.+...+ .+...|..++.++...|++++|+..++++++.. +.+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 44566677777888888888888888877633 366778888888888888888888888887653 3346677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 009255 440 LVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+...|++++|++.++++++..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 888888888888888887764
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.71 E-value=2.4e-07 Score=73.84 Aligned_cols=99 Identities=10% Similarity=-0.005 Sum_probs=88.5
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLIS 403 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 403 (539)
+...+..+...+...|++++|...|++.++.. +.+...+..+..+|...|++++|+..|++++..... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45678888899999999999999999999875 347889999999999999999999999999988533 6788999999
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 009255 404 SLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~ 424 (539)
++...|++++|+..|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999865
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.70 E-value=4.8e-06 Score=73.30 Aligned_cols=192 Identities=9% Similarity=0.021 Sum_probs=144.9
Q ss_pred cCCCH-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCC----------HHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 009255 302 QSGKT-EQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQ----------VEKALQFHNKMVEKSFKPDIVTCNILLSGL 370 (539)
Q Consensus 302 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (539)
+.|.+ ++|+.++..+....+. +...++.--..+...+. +++++.+++.++...+ -+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 44444 5789999999876433 33444433333332222 6788999999988753 4788888887788
Q ss_pred HhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----
Q 009255 371 CREG--ILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERR-LEDAFGLLSEMEEKKLGPDRYTYAAIHTALVES---- 443 (539)
Q Consensus 371 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 443 (539)
...+ .++++..+++++.+..+. |..+|+.-..+....|. ++++++.+.++++.+ +-|..+|.....++...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 8888 489999999999998655 88899988888888888 599999999999865 45677777776666554
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhc-----------CCHHHHH
Q 009255 444 ----------GRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQ-----------GRYKDAL 502 (539)
Q Consensus 444 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~ 502 (539)
+.++++++++.+++..+ |-+..+|+.+...+... +.+++++
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~------------------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD------------------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 45889999999999998 44555898777676665 4689999
Q ss_pred HHHHHHHHcCCCCCH
Q 009255 503 QIFEETRQKGIAINK 517 (539)
Q Consensus 503 ~~~~~~~~~~~~p~~ 517 (539)
+.++++++ +.||.
T Consensus 259 ~~~~elle--~~pd~ 271 (331)
T 3dss_A 259 ESCKELQE--LEPEN 271 (331)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--hCccc
Confidence 99999998 57886
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.66 E-value=2.8e-07 Score=70.11 Aligned_cols=109 Identities=14% Similarity=0.231 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
...+..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|..+++++++.....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 71 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN----------- 71 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-----------
Confidence 3467778888889999999999999988753 4467778888999999999999999999998876110
Q ss_pred CCCCCCC----hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009255 475 PEEIDPS----SISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYM 521 (539)
Q Consensus 475 ~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 521 (539)
+++ ...+..++.++...|++++|.+.|+++++. .|+.....
T Consensus 72 ----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 116 (131)
T 1elr_A 72 ----REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLK 116 (131)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred ----chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHH
Confidence 111 458899999999999999999999999984 56644443
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.66 E-value=4.1e-07 Score=69.91 Aligned_cols=101 Identities=14% Similarity=0.020 Sum_probs=80.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 009255 358 PDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIH 437 (539)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 437 (539)
.+...+..+...+...|++++|...|++.+...+ .+...|..++.++...|++++|+..++++.+.. +.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 4567778888888888888888888888887643 366778888888888888888888888888653 34567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 009255 438 TALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.++...|++++|++.++++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 88888888888888888888765
No 172
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.65 E-value=9.6e-07 Score=85.20 Aligned_cols=173 Identities=11% Similarity=0.022 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC-
Q 009255 341 VEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGI----------LEKALKFFRSWILKGKAVDSVTYNTLISSLCKER- 409 (539)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 409 (539)
.++|.+.++.++..++ -+..+|+.-..++...|+ ++++.++++.+....++ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 4567888888887643 356667666666666666 89999999999988555 7889999899999999
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHH
Q 009255 410 -RLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESG-RLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSE 487 (539)
Q Consensus 410 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (539)
++++++..++++.+.. +-+..+|..-..++...| .++++.+++.++++.+ +.+..+|+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~------------------p~n~saW~~ 183 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------------------FSNYSSWHY 183 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT------------------CCCHHHHHH
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC------------------CCCccHHHH
Confidence 7799999999999864 456788888888888889 8999999999999987 455669999
Q ss_pred HHHHHhhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhh
Q 009255 488 KINEHCSQ--------------GRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSISK 536 (539)
Q Consensus 488 l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 536 (539)
.+.++... +++++|++.+++++. ..|++.+...+++.++...++.++
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 98888764 568999999999997 578888777788888887776444
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=3.3e-07 Score=69.68 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=74.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCC----HhhH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL--GPD----RYTY 433 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 433 (539)
...+..+...+...|++++|...++++.... +.+...+..++..+...|++++|+..++++..... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777778888888888888877763 33566777788888888888888888888775421 112 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..++.++...|++++|.+.++++++..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 778888888888888888888888875
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.64 E-value=4.6e-07 Score=69.56 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=72.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 009255 398 YNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-------------RYTYAAIHTALVESGRLEEAQKFTSIMVET----- 459 (539)
Q Consensus 398 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 459 (539)
+...+..+...|++++|+..|+++++. .|+ ...|..++.++...|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344445555566666666666666543 222 237888999999999999999999999998
Q ss_pred --CCCCcccccCCCCCCCCCCCCChh-hH----HHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 460 --GKINHQVVQPNTSKTPEEIDPSSI-SY----SEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 460 --~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+ |+.. +| +..+.++...|++++|+..|+++++
T Consensus 92 e~~-------------------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELN-------------------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTT-------------------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCC-------------------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6 6665 89 9999999999999999999999987
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.1e-06 Score=82.77 Aligned_cols=169 Identities=13% Similarity=0.068 Sum_probs=117.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-Chhh
Q 009255 328 FNTIIHGFCSEGQVEKALQFHNKMVEKSF-KPDI----VTCNILLSGLCREGILEKALKFFRSWILK----GKAV-DSVT 397 (539)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~ 397 (539)
+..++..|...|++++|.+.+..+.+... .++. .+.+.+...+...|+++.|..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 56677788888888888888877664210 1111 12333344455678889999888876643 2222 2346
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhC--CC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCC
Q 009255 398 YNTLISSLCKERRLEDAFGLLSEMEEK--KL--GP-DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTS 472 (539)
Q Consensus 398 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 472 (539)
+..++..+...|++++|..+++++... +. .+ ...++..+++.|...|++++|..+++++........
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------- 209 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-------- 209 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--------
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC--------
Confidence 778899999999999999999987643 11 11 145777888999999999999999999876532100
Q ss_pred CCCCCCCC-Ch--hhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 473 KTPEEIDP-SS--ISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 473 ~~~~~~~~-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.| .. ..+..++..+...|++++|...|.++.+
T Consensus 210 ------~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 210 ------CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp ------CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ------CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 21 2677888889999999999999888764
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.4e-06 Score=67.94 Aligned_cols=100 Identities=19% Similarity=0.047 Sum_probs=75.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhH
Q 009255 358 PDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVD----SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTY 433 (539)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 433 (539)
.+...+..+...+...|++++|...|++.... .|+ ...|..++.++...|++++|+..+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35566777777777888888888888877765 334 5667777788888888888888888877642 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..++.++...|++++|.++++++++..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 778888888888888888888888876
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.62 E-value=2.4e-07 Score=87.38 Aligned_cols=80 Identities=6% Similarity=0.039 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.++..++.++.+.|++++|+..++++++.. +.+..+|..++.+|...|++++|+..|+++++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD------------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344455555555555555555555555554 12223555555555555555555555555554
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 009255 511 KGIAINKSTYMNLMNGLIKR 530 (539)
Q Consensus 511 ~~~~p~~~~~~~~l~~~~~~ 530 (539)
+.|+.......++.++..
T Consensus 380 --l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 380 --VNPQNKAARLQISMCQKK 397 (457)
T ss_dssp --TC----CHHHHHHHHHHH
T ss_pred --hCCCCHHHHHHHHHHHHH
Confidence 345544444444444433
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.62 E-value=1.8e-07 Score=85.39 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=58.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 430 RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
..++..++.++.+.|++++|++.++++++.. +.+..+|..++.+|...|++++|++.|++++
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC------------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4566667777777777777777777777765 2233477777777777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCchhh
Q 009255 510 QKGIAINKSTYMNLMNGLIKRRKSISK 536 (539)
Q Consensus 510 ~~~~~p~~~~~~~~l~~~~~~~~~~~~ 536 (539)
+ +.|+.......+..+....++.++
T Consensus 335 ~--l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 335 E--IAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred H--hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6 456666666666655554444443
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.62 E-value=2.8e-07 Score=73.25 Aligned_cols=137 Identities=12% Similarity=0.000 Sum_probs=96.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCC----H
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSWILKGKA-VD----SVTYNTLISSLCKERRLEDAFGLLSEMEEKKL-GPD----R 430 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~ 430 (539)
.++..+...+...|++++|...+++....... ++ ..++..++..+...|++++|...++++.+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566677777778888888887776654111 11 13667788888888888888888888764310 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS-SISYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
.++..++.++...|++++|.+.++++++...... .++. ...+..++.++...|++++|.+.+++++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc-------------chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4566788888999999999999999886531100 0111 2277889999999999999999999987
Q ss_pred H
Q 009255 510 Q 510 (539)
Q Consensus 510 ~ 510 (539)
+
T Consensus 157 ~ 157 (164)
T 3ro3_A 157 E 157 (164)
T ss_dssp H
T ss_pred H
Confidence 6
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.61 E-value=4e-08 Score=93.13 Aligned_cols=123 Identities=13% Similarity=0.062 Sum_probs=78.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 009255 365 ILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESG 444 (539)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (539)
.+...+.+.|++++|.+.++++.+..+. +...|..++.+|...|++++|+..++++.+.. +.+..++..++.++...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3444556677777777777777766322 56677777777777777777777777777653 334566677777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHH--HhhcCCHHHHHHHHHH
Q 009255 445 RLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINE--HCSQGRYKDALQIFEE 507 (539)
Q Consensus 445 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 507 (539)
++++|++.++++++.. +.+...+..++.+ +.+.|++++|++.+++
T Consensus 89 ~~~eA~~~~~~al~~~------------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVK------------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHS------------------TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7777777777777765 2223355555555 6677777777777665
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.59 E-value=5.9e-07 Score=66.00 Aligned_cols=100 Identities=15% Similarity=0.027 Sum_probs=75.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHhhHHHH
Q 009255 359 DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGP--DRYTYAAI 436 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l 436 (539)
+...+..+...+...|++++|...++++..... .+...+..++.++...|++++|+..++++.+.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 445666677777788888888888888777632 356677778888888888888888888887653 33 46677778
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHcC
Q 009255 437 HTALVES-GRLEEAQKFTSIMVETG 460 (539)
Q Consensus 437 ~~~~~~~-g~~~~A~~~~~~~~~~~ 460 (539)
+.++... |++++|.+.++++++..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 8888888 88888888888888776
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=4.6e-07 Score=67.68 Aligned_cols=97 Identities=11% Similarity=-0.057 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALV 441 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (539)
.+..+...+.+.|++++|...|++++...+. +...|..++.++...|++++|+..|+++++.. +.+...+..++.++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445666677778888888888887776332 66677777778888888888888888877653 334566777777788
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 009255 442 ESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 442 ~~g~~~~A~~~~~~~~~~~ 460 (539)
..|++++|++.++++++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877765
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=1.5e-07 Score=89.21 Aligned_cols=124 Identities=15% Similarity=0.045 Sum_probs=97.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 009255 330 TIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKER 409 (539)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 409 (539)
.+...+...|++++|...++++++.. +.+..++..+..+|.+.|++++|+..++++.+..+ .+...|..++.+|...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 34456778899999999999999874 34688999999999999999999999999998743 36778999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHH
Q 009255 410 RLEDAFGLLSEMEEKKLGPDRYTYAAIHTA--LVESGRLEEAQKFTSIM 456 (539)
Q Consensus 410 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~ 456 (539)
++++|+..++++.+.. +.+...+..+..+ +.+.|++++|++.+++.
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999998753 2234455556555 78889999999988753
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.55 E-value=1e-06 Score=83.13 Aligned_cols=131 Identities=9% Similarity=-0.029 Sum_probs=98.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------hhhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVD--------------SVTYNTLISSLCKERRLEDAFGLLSEMEEKK 425 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 425 (539)
...+..+...|.+.|++++|...|++++....... ...|..+..+|.+.|++++|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44556666677777777777777777766422211 4678889999999999999999999998763
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHhhcCCHHHHHH-
Q 009255 426 LGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHCSQGRYKDALQ- 503 (539)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~- 503 (539)
+.+...+..++.++...|++++|+..|+++++.. |+. .++..++.++...|++++|.+
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------------------P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------------------PQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788889999999999999999999999887 544 488899999999999888764
Q ss_pred HHHHHHH
Q 009255 504 IFEETRQ 510 (539)
Q Consensus 504 ~~~~~~~ 510 (539)
.+++|..
T Consensus 408 ~~~~~f~ 414 (457)
T 1kt0_A 408 IYANMFK 414 (457)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 4555543
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=4.2e-06 Score=63.32 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HhhHHHH
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILKGKAVDS---VTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD---RYTYAAI 436 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l 436 (539)
+..+...+...|++++|...|+++....+. +. ..+..++.++...|++++|+..++++.+.. +.+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 344566677788888888888888776332 33 467777888888888888888888887653 222 4567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 437 HTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.++...|++++|++.++++++..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888888888876
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=1.3e-06 Score=79.64 Aligned_cols=122 Identities=11% Similarity=-0.049 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----------------cCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 009255 363 CNILLSGLCREGILEKALKFFRSWIL----------------KGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL 426 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 426 (539)
+..+...+.+.|++++|+..|+++++ . .+.+...|..+..+|.+.|++++|+..++++++..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~-~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL-QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHH-HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 44455555566666666666665554 2 11245678889999999999999999999999753
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 009255 427 GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQI 504 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 504 (539)
+.+...+..++.++...|++++|++.++++++.. +.+...+..+..++...++.+++.+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~------------------P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA------------------PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999999999999999987 33445888888888888888877654
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.50 E-value=2.1e-07 Score=71.25 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=74.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCcccccCCCCCCCC
Q 009255 407 KERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGR----------LEEAQKFTSIMVETGKINHQVVQPNTSKTPE 476 (539)
Q Consensus 407 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (539)
+.+.+++|+..+++.++.+ +.+...+..++.++...++ +++|+..|+++++.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---------------- 76 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC----------------
Confidence 3345566666666666543 3345566666666665554 569999999999998
Q ss_pred CCCCChh-hHHHHHHHHhhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009255 477 EIDPSSI-SYSEKINEHCSQG-----------RYKDALQIFEETRQKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 477 ~~~~~~~-~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 527 (539)
|+.. +|++++.+|...| ++++|++.|+++++ +.|+...+...+...
T Consensus 77 ---P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 77 ---PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 6554 9999999999875 89999999999998 689988887776543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.47 E-value=3.6e-07 Score=82.45 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=74.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009255 326 TTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSL 405 (539)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (539)
..+..+...+.+.|++++|...|++++.. .|+... +...++.+++...+ ....|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34455555666666666666666666654 222211 12223333332221 113677888888
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hh
Q 009255 406 CKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-IS 484 (539)
Q Consensus 406 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 484 (539)
...|++++|+..++++++.. +.+...+..++.++...|++++|++.|+++++.. |+. .+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-------------------p~~~~a 300 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-------------------PDDKAI 300 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------------CCCHHH
Confidence 88899999999998888653 3456788888888889999999999998888776 443 36
Q ss_pred HHHHHHH-HhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 485 YSEKINE-HCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 485 ~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
+..+..+ ....+..+++...|+++.. ..|+.
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~--~~p~~ 332 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFK--GKDEG 332 (338)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCC
Confidence 6666666 3345677888888888875 44554
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=1e-06 Score=64.66 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=61.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 009255 429 DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEET 508 (539)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 508 (539)
+...+..++..+...|++++|++.++++++.. +.+...|..++.+|...|++++|++.++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ------------------PQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34566677778888888888888888888876 334457888888888888888888888888
Q ss_pred HHcCCCCCH------HHHHHHHHHHHhcCCchhhcc
Q 009255 509 RQKGIAINK------STYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 509 ~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~ 538 (539)
++ +.|+. ......++.++...|+.++|+
T Consensus 65 l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 65 LR--YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HT--SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HH--hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 86 45664 333333444444444455554
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=1.2e-06 Score=69.58 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILK--------G---------KAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
.+......+.+.|++++|+..|++.+.. . .+.+...|..++.+|...|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4444555555566666666666555543 0 0113457888888899999999999999998875
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 425 KLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 425 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
. +.+...+..++.++...|++++|++.++++++..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3 4457788888999999999999999999999887
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.4e-05 Score=75.16 Aligned_cols=197 Identities=10% Similarity=-0.031 Sum_probs=89.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCccCH----------------hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C
Q 009255 226 ILHTLCCEKKLDEAYMLLNSASKRGYYLDE----------------VSYGTLITGYFRDEKANRALKLWDEMKERQIM-P 288 (539)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 288 (539)
-...+...|++++|.+.+..+.+....... ..+..+...|...|++++|.+.+..+...... +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 344556667777777777776665322110 12444555666666666666666554432111 1
Q ss_pred CH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhC--C--
Q 009255 289 ST----FTYNAMIWGLSQSGKTEQAIDMLNELLQS----GMIP-DETTFNTIIHGFCSEGQVEKALQFHNKMVEK--S-- 355 (539)
Q Consensus 289 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-- 355 (539)
+. .+.+.+...+...|+.+.+..+++..... +..+ ...++..+...+...|++++|..+++.+... +
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 11122222333445555555555554321 1111 1234444555555555555555555554421 0
Q ss_pred -CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-C-C--hhhHHHHHHHHHccCChHHHHHHHHHHH
Q 009255 356 -FKPDIVTCNILLSGLCREGILEKALKFFRSWILKG--KA-V-D--SVTYNTLISSLCKERRLEDAFGLLSEME 422 (539)
Q Consensus 356 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~-~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 422 (539)
.+....++..++.+|...|++++|..++++..... .. | . ...+..++..+...|++++|...|.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 01112344455555555555555555555444320 00 0 0 1123344444445555555555555544
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=1.1e-05 Score=77.99 Aligned_cols=173 Identities=8% Similarity=-0.027 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCC----------HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-
Q 009255 306 TEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQ----------VEKALQFHNKMVEKSFKPDIVTCNILLSGLCREG- 374 (539)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 374 (539)
.++|++.++++....+. +...|+.-..++...|+ ++++...++.+++... -+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence 45666666666665332 34444444444444444 7888888888887653 37778887777788888
Q ss_pred -CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---------
Q 009255 375 -ILEKALKFFRSWILKGKAVDSVTYNTLISSLCKER-RLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVES--------- 443 (539)
Q Consensus 375 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 443 (539)
+++++...++++.+.++. +..+|+.-..++...| .++++++.+.++++.+ +-|..+|.....++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 668999999998888655 7778888888888888 8888999888888654 44567777766666552
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHH
Q 009255 444 -----GRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKD 500 (539)
Q Consensus 444 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 500 (539)
+.++++.+++.+++..+ |-+..+|+.+...+.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~------------------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD------------------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC------------------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC------------------CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999987 3455599999999999888665
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.42 E-value=6.5e-07 Score=80.74 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=81.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTA 439 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (539)
...+..+...+.+.|++++|...|++++.. .|+.. .+...++++++...+. ..++..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344555666666677777777777776654 22211 1222333333332221 1367889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009255 440 LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKST 519 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 519 (539)
+.+.|++++|+..++++++.+ +.+..+|..++.+|...|++++|+..|+++++ +.|+...
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~ 299 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKA 299 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHH
Confidence 999999999999999999987 33455999999999999999999999999986 6788877
Q ss_pred HHHHHHHHH
Q 009255 520 YMNLMNGLI 528 (539)
Q Consensus 520 ~~~~l~~~~ 528 (539)
....+..+.
T Consensus 300 a~~~L~~l~ 308 (338)
T 2if4_A 300 IRRELRALA 308 (338)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 776666553
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.38 E-value=4.7e-07 Score=67.32 Aligned_cols=87 Identities=15% Similarity=0.118 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 009255 373 EGILEKALKFFRSWILKG--KAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQ 450 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 450 (539)
.|++++|+..|+++++.+ .+.+...+..++.+|...|++++|+..++++++.. +.+..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777666643 12234466667777777777777777777776542 334556666777777777777777
Q ss_pred HHHHHHHHcC
Q 009255 451 KFTSIMVETG 460 (539)
Q Consensus 451 ~~~~~~~~~~ 460 (539)
+.++++++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 7777777665
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.38 E-value=2e-06 Score=68.22 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=82.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hh
Q 009255 327 TFNTIIHGFCSEGQVEKALQFHNKMVEKSFK-PD----IVTCNILLSGLCREGILEKALKFFRSWILKGKA-VD----SV 396 (539)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~ 396 (539)
++..+...+...|++++|...+++..+.... ++ ..++..+..++...|++++|...+++....... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555565555555555432100 01 135556666777777777777777766543111 11 33
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEK----KLGP-DRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.+..++.++...|++++|...+++..+. +..+ ...++..++..+...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5667777788888888888888877643 1111 13456677888888899999999998887654
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.32 E-value=8.4e-06 Score=62.59 Aligned_cols=99 Identities=18% Similarity=0.057 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------C-----hhhHHHHHHHHHccCChHHHHHHHHHHHhC-----C
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKAV------D-----SVTYNTLISSLCKERRLEDAFGLLSEMEEK-----K 425 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~ 425 (539)
.+......+.+.|++++|+..|++.+...+.. + ...|..+..++...|++++|+..++++++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455566667777777777777777652220 1 228888999999999999999999998864 1
Q ss_pred CCCC-HhhH----HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 426 LGPD-RYTY----AAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 426 ~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.|+ ...| ...+.++...|++++|++.|+++++..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1565 4567 788999999999999999999999886
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.26 E-value=3.6e-05 Score=58.81 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHH
Q 009255 375 ILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE----SGRLEEAQ 450 (539)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 450 (539)
++++|.+.|++..+.+ ++... +...|...+.+++|+..|++..+.| +......++..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666654 22222 5555555556666666666666543 44555566666665 56677777
Q ss_pred HHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHHHHHcC
Q 009255 451 KFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCS----QGRYKDALQIFEETRQKG 512 (539)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 512 (539)
++++++.+.+ +..++..|+..|.. .+++++|...|+++.+.|
T Consensus 82 ~~~~~Aa~~g--------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN--------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT--------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC--------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776643 33456666666666 667777777777776654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.25 E-value=4.3e-06 Score=61.76 Aligned_cols=79 Identities=13% Similarity=0.049 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHH
Q 009255 413 DAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEH 492 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 492 (539)
+|+..|+++.+.. +.+...+..++.++...|++++|++.++++++.. +.+...|..++.+|
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~ 63 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD------------------PTYSVAWKWLGKTL 63 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHH
Confidence 4667777777543 3456677777888888888888888888888876 23344788888888
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 009255 493 CSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 493 ~~~g~~~~A~~~~~~~~~ 510 (539)
...|++++|...|+++++
T Consensus 64 ~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 64 QGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888776
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.25 E-value=6.7e-06 Score=77.30 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=99.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHhC-----CC-CCC-HhhHH
Q 009255 369 GLCREGILEKALKFFRSWILK---GKAVD----SVTYNTLISSLCKERRLEDAFGLLSEMEEK-----KL-GPD-RYTYA 434 (539)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~ 434 (539)
.+...|++++|+.++++.++. -..|+ ..+++.|+.+|...|++++|..+++++++- |. .|+ ..++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887754 11222 337889999999999999999999988743 21 222 45778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 009255 435 AIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQK 511 (539)
Q Consensus 435 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 511 (539)
.|+.+|...|++++|+.+++++++.... ..-+-.|+.. ....+..++...|++++|..+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-----------THGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998764311 0000134444 6778899999999999999999999863
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=8.8e-07 Score=65.04 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=66.3
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCC
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSK 473 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 473 (539)
+...+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|++.++++++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT------------- 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------
Confidence 34566677777778888888888888877653 3456677777788888888888888888888776
Q ss_pred CCCCCCCC-------hhhHHHHHHHHhhcCCHHHHHHHHHH
Q 009255 474 TPEEIDPS-------SISYSEKINEHCSQGRYKDALQIFEE 507 (539)
Q Consensus 474 ~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~ 507 (539)
|+ ...+..++.++...|++++|+..+++
T Consensus 69 ------p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 69 ------STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ------SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 43 33566677777777776666655544
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.18 E-value=5.3e-05 Score=57.85 Aligned_cols=110 Identities=14% Similarity=-0.019 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCChHHHH
Q 009255 340 QVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCK----ERRLEDAF 415 (539)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 415 (539)
++++|..+|++..+.+ .+... +...|...+.+++|.+.|++..+.| ++..+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5667777777777665 22222 5566666666777777777776653 55666677777766 67777777
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 009255 416 GLLSEMEEKKLGPDRYTYAAIHTALVE----SGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 460 (539)
..|++..+.| +...+..++..|.. .+++++|.++++++.+.+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777653 45556667777776 677777777777777765
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.17 E-value=1.2e-05 Score=56.30 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=52.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 430 RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
...+..++..+...|++++|+++++++++.. +.+...+..++.++...|++++|+..+++++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456667777777777777777777777765 2334477777777777788888887777777
Q ss_pred HcCCCCCHHHHHHHHHHH
Q 009255 510 QKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 510 ~~~~~p~~~~~~~~l~~~ 527 (539)
+ ..|+.......++.+
T Consensus 71 ~--~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 71 E--LDPNNAEAKQNLGNA 86 (91)
T ss_dssp H--HCTTCHHHHHHHHHH
T ss_pred h--cCCCCHHHHHHHHHH
Confidence 6 346555444444433
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.16 E-value=6e-06 Score=59.09 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=60.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 009255 428 PDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEE 507 (539)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 507 (539)
.+...+..++.++...|++++|++.++++++.+ |.+..+|..++.+|...|++++|++.|++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD------------------PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346677788888889999999999999999887 33444888899999999999999999998
Q ss_pred HHHcC-CCCCHHHHHHHHHHH
Q 009255 508 TRQKG-IAINKSTYMNLMNGL 527 (539)
Q Consensus 508 ~~~~~-~~p~~~~~~~~l~~~ 527 (539)
+++.. -.++......+...+
T Consensus 67 al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 67 GIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHhhhhcCCchhHHHHHHHHH
Confidence 88632 124444444444333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.14 E-value=1.6e-05 Score=55.50 Aligned_cols=83 Identities=14% Similarity=0.164 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
...+..+...+...|++++|+..+++..+.. +.+..++..++.++...|++++|.+.++++++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------- 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------
Confidence 4456677777777888888888888877643 3356677777888888888888888888888876
Q ss_pred CCCCCCChhhHHHHHHHHhhcC
Q 009255 475 PEEIDPSSISYSEKINEHCSQG 496 (539)
Q Consensus 475 ~~~~~~~~~~~~~l~~~~~~~g 496 (539)
+.+...+..++.++...|
T Consensus 74 ----p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 ----PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----TTCHHHHHHHHHHHHHHC
T ss_pred ----CCCHHHHHHHHHHHHhcC
Confidence 233447777777766543
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.10 E-value=8.7e-06 Score=60.09 Aligned_cols=80 Identities=10% Similarity=0.063 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 379 ALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
|...|+++....+ .+...+..++.++...|++++|+..++++++.. +.+...+..++.++...|++++|++.++++++
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555554422 244555566666666666666666666665432 22345555666666666666666666666665
Q ss_pred cC
Q 009255 459 TG 460 (539)
Q Consensus 459 ~~ 460 (539)
..
T Consensus 82 ~~ 83 (115)
T 2kat_A 82 AA 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.10 E-value=9.3e-06 Score=62.18 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=66.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh----------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 009255 372 REGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRL----------EDAFGLLSEMEEKKLGPDRYTYAAIHTALV 441 (539)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (539)
+.+.+++|.+.+++.++..+. +...|..+..++...+++ ++|+..|+++++.+ +.+..++..++.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 445677788888877776433 677777777777776654 58888888888653 334677888888888
Q ss_pred hc-----------CCHHHHHHHHHHHHHcC
Q 009255 442 ES-----------GRLEEAQKFTSIMVETG 460 (539)
Q Consensus 442 ~~-----------g~~~~A~~~~~~~~~~~ 460 (539)
.. |++++|++.|+++++.+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 76 48999999999999997
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.96 E-value=0.0002 Score=63.34 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=59.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 009255 427 GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFE 506 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 506 (539)
+.+..++..+...+...|++++|.+.+++++..+ |+...|..++..+.-.|++++|.+.|+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------------------~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-------------------MSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------------------CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456667666666666788888888888888886 676677788888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHH
Q 009255 507 ETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 507 ~~~~~~~~p~~~~~~~~l~ 525 (539)
+++. +.|...++.-.-+
T Consensus 335 ~Alr--L~P~~~t~~~~~~ 351 (372)
T 3ly7_A 335 TAFN--LRPGANTLYWIEN 351 (372)
T ss_dssp HHHH--HSCSHHHHHHHHH
T ss_pred HHHh--cCCCcChHHHHhC
Confidence 8887 5687777654433
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.94 E-value=5.7e-05 Score=71.01 Aligned_cols=126 Identities=14% Similarity=0.068 Sum_probs=90.0
Q ss_pred HHhcCCCHHHHHHHHHHHHhC-----C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-hhhHH
Q 009255 334 GFCSEGQVEKALQFHNKMVEK-----S--FKPDIVTCNILLSGLCREGILEKALKFFRSWILK-----GKA-VD-SVTYN 399 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~~~~ 399 (539)
.+...|++++|..++++.++. | .+....+++.++.+|...|++++|..++++.++. |.. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778888888888877642 1 1112457788888999999999999988887643 221 12 23678
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEK---KLGPD----RYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
.|+..|...|++++|..+++++.+- -+.|+ ..+...+..++...+.+++|...|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999887642 11233 234456667777888999999999888764
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.90 E-value=4.8e-05 Score=70.29 Aligned_cols=108 Identities=5% Similarity=-0.080 Sum_probs=79.4
Q ss_pred ccCChHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCC
Q 009255 407 KERRLEDAFGLLSEMEEK---KLGPD----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEID 479 (539)
Q Consensus 407 ~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (539)
..|++++|+.++++.++. -+.|+ ..++..++.+|...|++++|+.+++++++.... ..-+..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~-----------~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK-----------HYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH-----------HcCCCC
Confidence 457899999999887752 22333 367888999999999999999999998864310 001114
Q ss_pred CChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHH
Q 009255 480 PSSI-SYSEKINEHCSQGRYKDALQIFEETRQ---KGIAINKSTYMNLMN 525 (539)
Q Consensus 480 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~~l~ 525 (539)
|+.. ++++|+.+|..+|++++|+.+|+++++ .-+-||.+....+..
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 6665 899999999999999999999999876 224577665554433
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=3.2e-05 Score=55.20 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=32.3
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
++..+..++.+|...|++++|+..|+++++.. +.+..++..++.++...|++++|++.++++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444555555555555555555555555432 222334445555555555555555555555543
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=0.00024 Score=53.78 Aligned_cols=93 Identities=11% Similarity=-0.014 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCC--ChhhHH
Q 009255 412 EDAFGLLSEMEEKKLGPDRYTYAAIHTALVESG---RLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDP--SSISYS 486 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 486 (539)
..+.+.|.+..+.+ +++..+...+++++.+.+ +.++++.+++...+.. .| ....++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~------------------~p~~~rd~lY 75 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG------------------SKEEQRDYVF 75 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------------------CccchHHHHH
Confidence 44555566665554 467777778888888877 5568888888888765 24 234777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 487 EKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 487 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
.++-+|.+.|++++|++.++++++ ..|++.....+..
T Consensus 76 ~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 76 YLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 788888888888888888888887 5787766655544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.78 E-value=6e-05 Score=69.78 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=81.6
Q ss_pred HHHHccCChHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCC
Q 009255 403 SSLCKERRLEDAFGLLSEMEEK---KLGPD----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTP 475 (539)
Q Consensus 403 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (539)
..+...|++++|+.+++++++. -+.|+ ..++..++.+|...|++++|+.+++++++.... ..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~-----------~l 363 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI-----------FF 363 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------HS
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH-----------Hc
Confidence 3455778999999999988754 12333 357788999999999999999999998864310 00
Q ss_pred CCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHH
Q 009255 476 EEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ---KGIAINKSTYMNLMN 525 (539)
Q Consensus 476 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~~l~ 525 (539)
-+..|+.. ++++|+.+|..+|++++|+.+++++++ .-+-||.+....++.
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 11145555 899999999999999999999999875 224567665554433
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.76 E-value=0.00018 Score=50.09 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHH
Q 009255 427 GPDRYTYAAIHTALVESGR---LEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDAL 502 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 502 (539)
+++...+..++.++...++ .++|.++++++++.+ |+.. ++..++..+.+.|++++|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------------------p~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------------------PYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------------------cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566777778877765444 688999999999887 5444 8888888899999999999
Q ss_pred HHHHHHHHcCCCCC
Q 009255 503 QIFEETRQKGIAIN 516 (539)
Q Consensus 503 ~~~~~~~~~~~~p~ 516 (539)
..|+++++. .|+
T Consensus 64 ~~w~~~l~~--~p~ 75 (93)
T 3bee_A 64 DTWVLLLDS--NDP 75 (93)
T ss_dssp HHHHHHHTC--CCT
T ss_pred HHHHHHHhh--CCC
Confidence 999998873 455
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.64 E-value=0.00039 Score=49.79 Aligned_cols=84 Identities=5% Similarity=-0.071 Sum_probs=64.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 009255 429 DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEET 508 (539)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 508 (539)
+..-...++..+...|++..|..+++.+++...... ....+....+..++.+|.+.|++++|+..++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-----------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-----------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-----------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445566899999999999999999999988641100 000133448999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHH
Q 009255 509 RQKGIAINKSTYMNLMN 525 (539)
Q Consensus 509 ~~~~~~p~~~~~~~~l~ 525 (539)
++ +.|+.......+.
T Consensus 73 l~--l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 73 LE--LDPEHQRANGNLK 87 (104)
T ss_dssp HH--HCTTCHHHHHHHH
T ss_pred Hh--cCCCCHHHHhhHH
Confidence 97 6788876644444
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.63 E-value=0.00027 Score=50.11 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 009255 435 AIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGI 513 (539)
Q Consensus 435 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 513 (539)
..+..+...|++++|++.++++++.. +.+.. .|..++.+|...|++++|++.|+++++.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-- 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 45677889999999999999999987 34556 8999999999999999999999999984
Q ss_pred CCCHHH
Q 009255 514 AINKST 519 (539)
Q Consensus 514 ~p~~~~ 519 (539)
.|+...
T Consensus 65 ~p~~~~ 70 (99)
T 2kc7_A 65 NPDSPA 70 (99)
T ss_dssp CTTSTH
T ss_pred CCCcHH
Confidence 566543
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.58 E-value=0.0014 Score=57.98 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=57.2
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 392 AVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 392 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.++.+|..+...+...|++++|+..+++++..+ |+...+..++..+.-.|++++|.+.+++++..+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4467788888777777899999999999999764 787777788888999999999999999999987
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.56 E-value=0.00021 Score=50.64 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 401 LISSLCKERRLEDAFGLLSEMEEKKLGPDRY-TYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 401 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.+..+...|++++|+..++++.+.. +.+.. .+..++.++...|++++|++.++++++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455667777777777777777542 33445 66677777777777777777777777776
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.26 E-value=0.00059 Score=63.06 Aligned_cols=88 Identities=6% Similarity=-0.104 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHhC-----C-CCCC-HhhHHHHH
Q 009255 372 REGILEKALKFFRSWILK---GKAVD----SVTYNTLISSLCKERRLEDAFGLLSEMEEK-----K-LGPD-RYTYAAIH 437 (539)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~ 437 (539)
..|++++|+.++++.++. -..|+ ..+++.|+.+|...|++++|..+++++++- | -.|+ ..++..++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888877653 12222 236788889999999999999998887743 2 1233 35678899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 009255 438 TALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
.+|..+|++++|+.+++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.26 E-value=0.0021 Score=44.60 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=36.7
Q ss_pred ChhhHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 394 DSVTYNTLISSLCKERR---LEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++..+..++.++...++ .++|..+++++++.. +.+......++..+.+.|++++|+..|+++++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555555555543333 456666666666542 2334555555666666666666666666666654
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.15 E-value=0.0017 Score=60.14 Aligned_cols=93 Identities=13% Similarity=0.043 Sum_probs=70.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---CCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHhC-----C-CCCC-Hhh
Q 009255 367 LSGLCREGILEKALKFFRSWILKG---KAVD----SVTYNTLISSLCKERRLEDAFGLLSEMEEK-----K-LGPD-RYT 432 (539)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~ 432 (539)
+.-+.+.|++++|+.++++..+.. ..|+ ..+++.++.+|...|++++|+.++++++.- | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344567889999999998887541 1222 236788999999999999999999988743 2 1222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 433 YAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 433 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
+..++..|...|++++|..+++++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 778999999999999999999998764
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.11 E-value=0.0044 Score=44.98 Aligned_cols=93 Identities=10% Similarity=-0.028 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCcccccCCCCCCCCCCCC--ChhhHH
Q 009255 412 EDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE---AQKFTSIMVETGKINHQVVQPNTSKTPEEIDP--SSISYS 486 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 486 (539)
..+.+.|.+....+ .|+..+-..+++++.+..+..+ ++.+++.+.+.+ .| ......
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~------------------~p~~~Rd~lY 78 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG------------------SKEEQRDYVF 78 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------------------CcchHHHHHH
Confidence 34444455444434 3666666677777777776665 666666665543 23 222566
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 487 EKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 487 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
.++-++.+.|++++|++.++.+++ ..|++.....+..
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 677777788888888888888776 4676655544433
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.03 E-value=0.011 Score=44.00 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=68.4
Q ss_pred ChhhHHHHHHHHHccCCh------HHHHHHHHHHHhCCCCCCHhh----HHHH-H--HHHHhcCCHHHHHHHHHHHHHcC
Q 009255 394 DSVTYNTLISSLCKERRL------EDAFGLLSEMEEKKLGPDRYT----YAAI-H--TALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~----~~~l-~--~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
|+.+|-..+...-+.|++ ++.+++|+++... ++|+... |..+ + ..+...++.++|+++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566666666666666776 6777777777763 5564211 1111 0 12234588999999999998864
Q ss_pred CCCcccccCCCCCCCCCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 009255 461 KINHQVVQPNTSKTPEEIDPS-SISYSEKINEHCSQGRYKDALQIFEETRQKG 512 (539)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 512 (539)
.. ...|...+..-.++|+...|.+++.+++..+
T Consensus 91 -------------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 -------------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 22 3488888899999999999999999999654
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.01 E-value=0.011 Score=44.75 Aligned_cols=82 Identities=21% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHHHHHH
Q 009255 377 EKALKFFRSWILKGKAVDSVTYNTLISSLCKER---RLEDAFGLLSEMEEKKLGP--DRYTYAAIHTALVESGRLEEAQK 451 (539)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 451 (539)
..+++-|.+....+. ++..+...+.+++++.+ +.++++.++++..+.. .| +...+..++-++.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555433 46666667777777766 4557777777776643 24 24555666667777777777777
Q ss_pred HHHHHHHcC
Q 009255 452 FTSIMVETG 460 (539)
Q Consensus 452 ~~~~~~~~~ 460 (539)
+++.+++..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 777777775
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.95 E-value=0.0097 Score=50.40 Aligned_cols=92 Identities=9% Similarity=0.053 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC-
Q 009255 411 LEDAFGLLSEMEEKKLGPD---RYTYAAIHTALVE-----SGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS- 481 (539)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 481 (539)
...|...++++++. .|+ ...+..++..|.. -|+.++|.++|+++++.+ |+
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-------------------P~~ 237 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-------------------SAH 237 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-------------------CTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-------------------CCC
Confidence 45677778888754 566 4577888888887 499999999999999998 63
Q ss_pred -hhhHHHHHHHHhhc-CCHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 009255 482 -SISYSEKINEHCSQ-GRYKDALQIFEETRQKGIA--INKSTYMNL 523 (539)
Q Consensus 482 -~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~--p~~~~~~~~ 523 (539)
..++..+++.++.. |++++|.+.++++++...+ |+.......
T Consensus 238 ~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 238 DPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 56888999999985 9999999999999996666 665544433
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.89 E-value=1.8e-06 Score=77.42 Aligned_cols=244 Identities=14% Similarity=0.097 Sum_probs=141.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 009255 10 NVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLING 89 (539)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (539)
+..|..|..+..+.+++.+|++-|-+. -|+..|..++.+..+.|.+++-...+....+.. .++.+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 456777777877777777776544222 255667788888888888888888877666552 244455678888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhC--------------------CCCCC
Q 009255 90 WCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEH--------------------GIKPN 149 (539)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~ 149 (539)
|++.++..+..+++ . .|+..-...+..-|...|.++.|.-+|..+-.. .-.-+
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888765533221 1 356656666677777777777666665443211 01225
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009255 150 AVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHT 229 (539)
Q Consensus 150 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (539)
+.||.-+-.+|...+.+.-|.-.--.+.-. ++ -...++..|-..|.+++.+.+++.-... -......++.+.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHH
Confidence 566777777777777766665544444321 22 1223555667777777777777776532 23456667777666
Q ss_pred HhccCCHHHHHHHHHHHhhc-CCcc------CHhhHHHHHHHHHccCCHHHHH
Q 009255 230 LCCEKKLDEAYMLLNSASKR-GYYL------DEVSYGTLITGYFRDEKANRAL 275 (539)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~ 275 (539)
|++-. .++..+.++..-.+ +++- ....|..++..|..-.+++.|.
T Consensus 273 YsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66543 33332222221111 1110 2335666666666666666554
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.80 E-value=0.01 Score=42.24 Aligned_cols=67 Identities=7% Similarity=0.038 Sum_probs=41.7
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 009255 8 PDNVTYNTILDALFKKGKLNEVRDLLSDMKKQG------LVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQN 74 (539)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (539)
.+...+-.+...+...|++..|...|+...+.. -.+...++..+..++.+.|+++.|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556666777777777777777777665531 1223445666666666666666676666666654
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.091 Score=53.69 Aligned_cols=155 Identities=12% Similarity=0.139 Sum_probs=101.8
Q ss_pred HHHHhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 18 DALFKKGKLNEVRD-LLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 18 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
......+++++|.+ ++.. ++ +......++..+.+.|..+.|+++.+. . ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 44456788888866 4422 11 122336777778888888888876531 1 1113345678999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 009255 97 EEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNM 176 (539)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 176 (539)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....+.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9998875443 4678899999999999999999999988743 445556666677777766666555
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 177 EENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVM 211 (539)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (539)
...| -++....++.+.|++++|++++.++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5543 2334444566677777777776654
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.069 Score=54.57 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=21.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 337 SEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSW 386 (539)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 386 (539)
..|+++.|.++.+.+ .+...|..+...+.+.++++.|++.|.++
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345555555443221 24445555555555555555555555443
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.58 E-value=2.1e-05 Score=70.74 Aligned_cols=215 Identities=13% Similarity=0.108 Sum_probs=144.1
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 009255 8 PDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLI 87 (539)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (539)
-|+..|..++.+..+.|.+++-+..+.-..+.. .++.+=+.|+-+|++.++..+..+.+. .|+..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHH
Confidence 366788999999999999999999998777663 345556789999999998766544332 25665666777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC--------------------CCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCC
Q 009255 88 NGWCNAGMLEEAFRLRKEMESLK--------------------LLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIK 147 (539)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (539)
.-|...|.++.|.-+|..+.... -..++.||..+..+|...+++.-|.-.--.+.-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 77888888887776665544211 1346788999999999999988776554444322
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009255 148 PNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTIL 227 (539)
Q Consensus 148 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (539)
+.-...++..|-..|.+++-+.+++.-.... ......|+-|.-.|++- .+++..+.++..-.+ + |. ..++
T Consensus 229 --adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sr-i--Ni---pKvi 298 (624)
T 3lvg_A 229 --ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR-V--NI---PKVL 298 (624)
T ss_dssp --SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS-S--CC---TTTH
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-c--cH---HHHH
Confidence 1112345667889999999999999877432 35677888888888776 456666655443221 1 11 1234
Q ss_pred HHHhccCCHHHHHHHHH
Q 009255 228 HTLCCEKKLDEAYMLLN 244 (539)
Q Consensus 228 ~~~~~~~~~~~a~~~~~ 244 (539)
++|.+..-|.++.-++.
T Consensus 299 racE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYD 315 (624)
T ss_dssp HHHTTTTCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHh
Confidence 44555555554444443
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.22 Score=38.76 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=20.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 009255 21 FKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDL 70 (539)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 70 (539)
.+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444555554444433 1344445555544455555544444444
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.40 E-value=0.057 Score=40.27 Aligned_cols=103 Identities=11% Similarity=0.028 Sum_probs=69.2
Q ss_pred CcChhhHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHHHH---HHccCCHhHHHHHHHHHHh
Q 009255 7 LPDNVTYNTILDALFKKGKL------NEVRDLLSDMKKQGLVPNRT----TYNILVSG---YCKLGWLKEAMRVVDLMTQ 73 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~----~~~~l~~~---~~~~g~~~~a~~~~~~~~~ 73 (539)
+.|..+|-..+..+-+.|++ ++.+++|++.... +||+.. .|..+--- +...++.++|+++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888888888888 8888888888775 455432 11111111 1234788888888888865
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009255 74 NKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKL 111 (539)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 111 (539)
.. +--...|......-.++|+...|.+++......+.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 42 22366667777777788888888888888877653
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.3 Score=37.99 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=47.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 009255 91 CNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKAC 170 (539)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 170 (539)
.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.++..
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455555555554443 1344555555555555555555555555432 233344444455555444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 171 KIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDV 210 (539)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (539)
.+-+.....| -++.....+.-.|++++++++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443333322 123333344455555555555543
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.15 E-value=0.15 Score=37.16 Aligned_cols=80 Identities=11% Similarity=-0.032 Sum_probs=59.6
Q ss_pred CCCCCHhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC--hhhHHHHHHHHhhcCCHH
Q 009255 425 KLGPDRYTYAAIHTALVESGRL---EEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS--SISYSEKINEHCSQGRYK 499 (539)
Q Consensus 425 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 499 (539)
+-.|+..+-..+++++.+..+. .+++.+++.+.+.+ |. ...+..++-++.+.|+++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-------------------~~~~Rd~LYyLAvg~yklgdY~ 95 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-------------------ESRRRECLYYLTIGCYKLGEYS 95 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-------------------GGGHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------------------cchhHHHHHHHHHHHHHhhhHH
Confidence 3467777777888888877654 45788888888765 42 237778888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 500 DALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 500 ~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
+|++..+.+++ ..|++.....+-.
T Consensus 96 ~Ar~y~d~lL~--~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 96 MAKRYVDTLFE--HERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred HHHHHHHHHHh--hCCCCHHHHHHHH
Confidence 99999999986 6788776665544
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.09 E-value=0.065 Score=45.46 Aligned_cols=85 Identities=19% Similarity=0.092 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-CCh
Q 009255 341 VEKALQFHNKMVEKSFKPD---IVTCNILLSGLCRE-----GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE-RRL 411 (539)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 411 (539)
...|...++++++. .|+ ...+..+...|.+. |+.++|.+.|++.++.++.-+..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666666776665 334 45677777777773 78888888888888764332466677777777774 788
Q ss_pred HHHHHHHHHHHhCCCC
Q 009255 412 EDAFGLLSEMEEKKLG 427 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~ 427 (539)
+++.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888876444
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.08 E-value=0.26 Score=35.94 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=70.0
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 009255 337 SEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFG 416 (539)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 416 (539)
-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+. .|. ...|+....+.
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 345666666666655543 24444444443333333333333333333221 121 22344444444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcC
Q 009255 417 LLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQG 496 (539)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 496 (539)
.+-.+ ..+...+...+..+..+|+.++-.+++..++... +|++.....++.+|.+.|
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~------------------~~~~~~l~kia~Ay~Klg 139 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN------------------EVSASILVAIANALRRVG 139 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C------------------CSCHHHHHHHHHHHHHTT
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccC------------------CCChHHHHHHHHHHHHhc
Confidence 44332 1233344445556666666666666666654433 466666666677777777
Q ss_pred CHHHHHHHHHHHHHcCC
Q 009255 497 RYKDALQIFEETRQKGI 513 (539)
Q Consensus 497 ~~~~A~~~~~~~~~~~~ 513 (539)
+..+|.+++.++-+.|+
T Consensus 140 ~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 140 DERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHHHHhhh
Confidence 77777777777666653
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.07 E-value=0.072 Score=38.67 Aligned_cols=86 Identities=23% Similarity=0.128 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH---HHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHH
Q 009255 373 EGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLED---AFGLLSEMEEKKLGP--DRYTYAAIHTALVESGRLE 447 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 447 (539)
......+.+-+......|. |+..+-..+++++.+..+... ++.++++....+ .| .......++-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344555666666555444 577777788888888877666 888888887653 34 3455667778899999999
Q ss_pred HHHHHHHHHHHcC
Q 009255 448 EAQKFTSIMVETG 460 (539)
Q Consensus 448 ~A~~~~~~~~~~~ 460 (539)
+|+++++.+++..
T Consensus 92 ~A~~~~~~lL~~e 104 (126)
T 1nzn_A 92 KALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.90 E-value=0.34 Score=35.84 Aligned_cols=78 Identities=12% Similarity=-0.018 Sum_probs=57.8
Q ss_pred CCCHhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC--hhhHHHHHHHHhhcCCHHHH
Q 009255 427 GPDRYTYAAIHTALVESGRL---EEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS--SISYSEKINEHCSQGRYKDA 501 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 501 (539)
.|+..+-..+++++.+..+. .+++.+++.+.... |. ......++-++.+.|++++|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-------------------~~~~RdcLYyLAvg~ykl~~Y~~A 96 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-------------------ESRRRECLYYLTIGCYKLGEYSMA 96 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-------------------CSTHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------------------ccchhHHHHHHHHHHHHhhhHHHH
Confidence 57777777888888877654 45777888887765 42 23667778888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 502 LQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 502 ~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
++..+.+++ ..|++.....+-.
T Consensus 97 r~y~d~lL~--~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 97 KRYVDTLFE--HERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHH--TCCCCHHHHHHHH
T ss_pred HHHHHHHHh--cCCCcHHHHHHHH
Confidence 999999987 6788766655543
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.62 E-value=2.2 Score=43.14 Aligned_cols=270 Identities=11% Similarity=0.031 Sum_probs=140.6
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCccCHh--hHHHHHHHHHccCCHHHHHHHHHHHHHcCC-------CCCHhhHHHHHHH
Q 009255 229 TLCCEKKLDEAYMLLNSASKRGYYLDEV--SYGTLITGYFRDEKANRALKLWDEMKERQI-------MPSTFTYNAMIWG 299 (539)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 299 (539)
.....|+.+++..++......+...+.. .-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3456777777877776655421011222 222333444555655677777776654311 0111222233333
Q ss_pred HHcCCC-HHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH--HHHhcC
Q 009255 300 LSQSGK-TEQAIDMLNELLQSGMIPDE--TTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS--GLCREG 374 (539)
Q Consensus 300 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g 374 (539)
+.-.|. -+++.+.+..+....- +.. ..-..+...+...|+.+....++..+.+.. +..+...++. ++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 2456666666655321 111 112234445567788888888888777642 3333333333 344678
Q ss_pred CHHHHHHHHHHHHHcCCCCChhh-H---HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 009255 375 ILEKALKFFRSWILKGKAVDSVT-Y---NTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQ 450 (539)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~-~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 450 (539)
+.+.+..+.+.+... .++.. | ..++-+|+..|+.....+++..+.... ..+..-...++-++...|+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 888888888887764 23332 2 244556778888776667888887642 222222223333444466665566
Q ss_pred HHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009255 451 KFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRY-KDALQIFEETRQKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 527 (539)
++++.+.+.. .|..-.-..++-+....|+. .+|+.++.++.. .+|..+-...+.++
T Consensus 615 rlv~~L~~~~------------------d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 615 RIVQLLSKSH------------------NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHTTTGGGCS------------------CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHhcC------------------CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 6655444432 23333222333333444443 678888888874 56665554444333
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.61 E-value=0.43 Score=34.82 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009255 158 KWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKG 215 (539)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (539)
......|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333344444444444432221 13333333344444444444444444444443333
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.50 E-value=0.022 Score=43.44 Aligned_cols=127 Identities=10% Similarity=0.031 Sum_probs=69.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhC-CCCCC-------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccC-
Q 009255 399 NTLISSLCKERRLEDAFGLLSEMEEK-KLGPD-------RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQP- 469 (539)
Q Consensus 399 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~- 469 (539)
..-+..+...|.++.|+-+...+... +..|+ ..++..++.++...|++..|...|+++++........-..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33455556666777666666554422 11122 1345566677777777777777777765543211000000
Q ss_pred ----C--CCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 470 ----N--TSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 470 ----~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
. .........++...-..++.+|.+.|++++|+.+++.+..+. -..-.+.+|+-++
T Consensus 104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~---Rt~kvnm~LakLy 165 (167)
T 3ffl_A 104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ---RTPKINMLLANLY 165 (167)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG---CCHHHHHHHHHHC
T ss_pred ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh---cCHHHHHHHHHHh
Confidence 0 000000122344566779999999999999999999876432 2234455555444
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.098 Score=51.56 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=47.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
++-|...|+++-|.++.++++..- |+. .+|..|+.+|...|+++.|+-+++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-------------------PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-------------------LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-------------------chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345667899999999999999986 555 499999999999999999999999874
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.20 E-value=1.3 Score=41.19 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=70.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCC
Q 009255 398 YNTLISSLCKERRLEDAFGLLSEMEEK--KLGPD---RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTS 472 (539)
Q Consensus 398 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 472 (539)
...|+..+...|++.+|..++.++... +..+. ...+...++.|...+++..|..++.++.......
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--------- 210 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--------- 210 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc---------
Confidence 356778888999999999999988643 22111 2456667788999999999999999875321110
Q ss_pred CCCCCCCCChh--hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 473 KTPEEIDPSSI--SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 473 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
..+|+.. .+...+..+...++|.+|.+.|.++.+
T Consensus 211 ----~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 211 ----PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ----SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 0012222 556778888889999999999888865
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.03 E-value=3.5 Score=41.83 Aligned_cols=265 Identities=11% Similarity=0.022 Sum_probs=132.0
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-------CCCHH--hHHHHHH
Q 009255 160 YCKEGKIDKACKIVRNMEENGFSPDCV--TYNTLIDANCKAGNMEEAFRMMDVMGRKGL-------KMNTI--TLNTILH 228 (539)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~--~~~~l~~ 228 (539)
....|+.+++..++......+...+.. .-..+.-+....|...++..++.......- .+... ....+..
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777777666654321011222 222333344455555567776666554211 01111 1112223
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCcc-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHH--HHHHHHHcCCC
Q 009255 229 TLCCEKKLDEAYMLLNSASKRGYYL-DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYN--AMIWGLSQSGK 305 (539)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ 305 (539)
++...++ +++...+..+....... ....-.++...+...|+.+....++..+.+.. +..... .+.-++...|+
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 3333343 34445555544432110 01122234445567777777777777766532 222222 33334556788
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 009255 306 TEQAIDMLNELLQSGMIPDET--TFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFF 383 (539)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (539)
.+.+..+++.+... ..|... ....+.-+|+..|+......++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888777653 122111 11233456778888877777888887642 223333333333444567766677777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHHhCCCCCCHhhHH
Q 009255 384 RSWILKGKAVDSVTYNTLISSLCKERRL-EDAFGLLSEMEEKKLGPDRYTYA 434 (539)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~ 434 (539)
+.+...+ .|....-..+..+....|+. .+++..+..+.. .+|..+-.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq 665 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQ 665 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHH
Confidence 6555542 23332223333344444443 578888888863 34544433
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.20 E-value=0.41 Score=43.54 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH-
Q 009255 432 TYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ- 510 (539)
Q Consensus 432 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 510 (539)
+...++.++...|+++++...+..++..+ |-+...|..++.+|.+.|+..+|++.|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~------------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH------------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567778889999999999999999987 34555999999999999999999999998643
Q ss_pred ----cCCCCCHHHHHHH
Q 009255 511 ----KGIAINKSTYMNL 523 (539)
Q Consensus 511 ----~~~~p~~~~~~~~ 523 (539)
.|+.|...+-..+
T Consensus 235 L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 235 LADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHSCCCCHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHH
Confidence 5899987765433
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.61 E-value=5.6 Score=38.56 Aligned_cols=265 Identities=9% Similarity=0.011 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHc
Q 009255 188 YNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFR 267 (539)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (539)
-...+..+.+.+++...+.++.. .+.+...-.....+....|+...|......+=..|.. .+..+..++..+..
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHH
Confidence 34455666677787776664432 2345555555666677778776666655555444322 33344444444443
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHhcCCCHHHHHH
Q 009255 268 DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDET-TFNTIIHGFCSEGQVEKALQ 346 (539)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 346 (539)
.|. .....++..+ ......|+...|..+...+ .++.. ....++..... ...+..
T Consensus 149 ~g~----------------lt~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~ 203 (618)
T 1qsa_A 149 SGK----------------QDPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLT 203 (618)
T ss_dssp TTC----------------SCHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHH
T ss_pred CCC----------------CCHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHH
Confidence 332 2122233332 2233445555554443321 12221 11222222211 122221
Q ss_pred HHHHHHhCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHccCChHHHHHHHH
Q 009255 347 FHNKMVEKSFKPDIV---TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTY----NTLISSLCKERRLEDAFGLLS 419 (539)
Q Consensus 347 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~ 419 (539)
.... . .++.. .+...+.-+.+ .+.+.|...+....... ..+.... ..++......+...++...+.
T Consensus 204 ~~~~---~--~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~ 276 (618)
T 1qsa_A 204 FART---T--GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (618)
T ss_dssp HHHH---S--CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred HHhc---c--CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 1111 1 11111 11111222222 36677777776665432 1222222 222222233342345555555
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHH
Q 009255 420 EMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYK 499 (539)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 499 (539)
..... .++.......+....+.|+++.|.++++.+.... ........-+++++...|+.+
T Consensus 277 ~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~------------------~~~~r~~YW~~ra~~~~g~~~ 336 (618)
T 1qsa_A 277 DAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA------------------KEKDEWRYWQADLLLERGREA 336 (618)
T ss_dssp HHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG------------------GGSHHHHHHHHHHHHHTTCHH
T ss_pred hcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccc------------------cccHhHHHHHHHHHHHcCCHH
Confidence 54432 2333333333333445577777777776554421 011224455666677777777
Q ss_pred HHHHHHHHHHH
Q 009255 500 DALQIFEETRQ 510 (539)
Q Consensus 500 ~A~~~~~~~~~ 510 (539)
+|..+|+++.+
T Consensus 337 ~a~~~~~~~a~ 347 (618)
T 1qsa_A 337 EAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 77777777653
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.53 E-value=1.2 Score=32.46 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=48.2
Q ss_pred CCCCChhhHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 390 GKAVDSVTYNTLISSLCKERRL---EDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+..|++.+--.+++++.+..+. .+++.++++..+.+..-....+..++-++.+.|++++|+++.+.+++..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3445666666677777766543 4577777777765411124556667778888888888888888888775
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.85 E-value=1.1 Score=34.31 Aligned_cols=120 Identities=7% Similarity=-0.024 Sum_probs=62.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCCC-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChh
Q 009255 327 TFNTIIHGFCSEGQVEKALQFHNKMVEKS-FKPD-------IVTCNILLSGLCREGILEKALKFFRSWILKG--KAVDSV 396 (539)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 396 (539)
.+..-+..+...|.++.|+-+.+.+.... ..|+ ..++..+++++...+++..|...|++.+... ..-+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444556667777777777766655321 1222 1245566667777777777777777765431 110111
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
....+. ....... .....++.+.-..+..++.+.|++++|+..++.+...
T Consensus 102 ~~~~~~---~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTG---NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccc---ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 110000 0000000 0012334455566888999999999999988776444
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.59 E-value=6.4 Score=36.45 Aligned_cols=189 Identities=13% Similarity=0.109 Sum_probs=103.2
Q ss_pred cCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH----Hhc
Q 009255 23 KGKLNEVRDLLSDMKKQ-----GLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGW----CNA 93 (539)
Q Consensus 23 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 93 (539)
.|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+.+..... ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888877666542 234456677888899999999998888887766543222 22223333322 222
Q ss_pred CChHHH--HHHHHHHHh--CC-CCC---ChhhHHHHHHHHhccCCHhHHHHHHHHHHhC--CCCCC---HHHHHHHHHHH
Q 009255 94 GMLEEA--FRLRKEMES--LK-LLP---DVVTYNTLINRFFESGRSMEAFKLIDELDEH--GIKPN---AVTHNIMIKWY 160 (539)
Q Consensus 94 g~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 160 (539)
...+.. ..+.+.... .| +.. .......|...+...|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 222211 111111100 00 111 1112345667777778888888877776432 11111 23555666777
Q ss_pred HhcCCHhHHHHHHHHHHH----cCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009255 161 CKEGKIDKACKIVRNMEE----NGFSPD--CVTYNTLIDANCKAGNMEEAFRMMDVMG 212 (539)
Q Consensus 161 ~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (539)
...+++..|..++.++.. ...+|+ ...+...+..+...++|.+|-+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777777777776532 111121 1234555566666777777776666554
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.50 E-value=2.4 Score=31.38 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=44.5
Q ss_pred CCChhhHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 392 AVDSVTYNTLISSLCKERRL---EDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 392 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.|+..+-..+.+++.+..+. .+++.++++....+..-....+..++-++.+.|++++|+++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45666666666777665543 4567777777654311233455566677778888888888888888775
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.06 E-value=1.4 Score=43.69 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=43.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 009255 262 ITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNEL 316 (539)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (539)
...+...|+++.|+++-++.....+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44566789999999999988776433 5788999999999999999999888765
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.67 E-value=1.9 Score=39.74 Aligned_cols=62 Identities=8% Similarity=-0.098 Sum_probs=32.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKLGP--DRYTYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
++..++..|.+.|++++|.+.+.++......+ -...+..+++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555555555555555555555432111 234444555555555666666665555543
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.64 E-value=1.3 Score=40.16 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHhhHHHH
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEE-----KKLGPDRYTYAAI 436 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 436 (539)
...++..+...|++++|...+..+.... +.+...|..++.++...|+..+|++.|++..+ .|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445666777888888888887777652 33666788888888888888888888877654 3778877654433
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.47 E-value=4.2 Score=43.17 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 118 YNTLINRFFESGRSMEAFKLIDELDEHGIKPNA----VTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLID 193 (539)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (539)
|..++..+-+.+.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+.... .-......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHHH
Confidence 556666676777777777666655543222121 245666777777777777777776665542 22334445555
Q ss_pred HHHhcC
Q 009255 194 ANCKAG 199 (539)
Q Consensus 194 ~~~~~~ 199 (539)
..+..|
T Consensus 980 ~lce~~ 985 (1139)
T 4fhn_B 980 QLTKQG 985 (1139)
T ss_dssp HHHHHC
T ss_pred HHHhCC
Confidence 444433
No 254
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=91.26 E-value=2 Score=34.11 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 411 LEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..++..+|..|...|+-.. ...|...+..+...|++.+|.++|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4566666666666655433 3445556666666666666666666666655
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.66 E-value=1.3 Score=37.12 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=57.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 438 TALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
..+.+.|++++|++.....++.. |.|...-..++..+|-.|+|+.|.+-++...+ +.|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~------------------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS------------------PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchh
Confidence 45678899999999999999987 44555888899999999999999999999987 57876
Q ss_pred HHHHHHHHHHH
Q 009255 518 STYMNLMNGLI 528 (539)
Q Consensus 518 ~~~~~~l~~~~ 528 (539)
.....+...++
T Consensus 65 ~~~a~~yr~lI 75 (273)
T 1zbp_A 65 LPGASQLRHLV 75 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 65554444443
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.11 E-value=3.3 Score=28.40 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009255 271 ANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELL 317 (539)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (539)
.-+..+-++.+...+..|++....+.+.+|.+.+++..|.++++-++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555544
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.87 E-value=3.5 Score=28.29 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 341 VEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILK 389 (539)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 389 (539)
.-+..+-+..+.....-|++.+..+.+++|.+.+++.-|.++|+.+..+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444555555555556666666666666666666666666555544
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.37 E-value=10 Score=32.90 Aligned_cols=168 Identities=13% Similarity=0.090 Sum_probs=85.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHH----HHHHHHCCCCCCHHhHHHHHH
Q 009255 258 YGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDM----LNELLQSGMIPDETTFNTIIH 333 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 333 (539)
|..+..-|.+.+++++|++++..-.. .+.+.|+...|.++ ++-..+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444456666666666666543221 12333444433332 333334456666666666665
Q ss_pred HHhcCCCHH-HHHHHHHHHH----hCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 009255 334 GFCSEGQVE-KALQFHNKMV----EKS--FKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLC 406 (539)
Q Consensus 334 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (539)
.+.....-+ .=..+.+.++ +.+ ...++.....+...|.+.|++.+|+..|-... .-++..+..++.-+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHH
Confidence 554432111 1122222222 221 23477888899999999999999888774211 013444544444333
Q ss_pred cc---CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 407 KE---RRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 407 ~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
.. |...++-- .+...++ -|.-.|+...|..++....+.
T Consensus 177 ~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 177 CQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 33 33222111 1111222 344578899999988877644
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.70 E-value=6.2 Score=41.88 Aligned_cols=149 Identities=12% Similarity=0.075 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhC-------------------
Q 009255 84 NMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEH------------------- 144 (539)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------- 144 (539)
..++..+...+..+-+.++.... +.+...--.+..++...|++++|.+.|++....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555555666666555443332 223333344556666677777777776554210
Q ss_pred -C--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 009255 145 -G--IKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDC----VTYNTLIDANCKAGNMEEAFRMMDVMGRKGLK 217 (539)
Q Consensus 145 -~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (539)
. ...-..-|..++..+-+.+.++.+.+.-+...+...+.+. ..|..+...+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 0 0111234677888999999999999888777664322221 2577888999999999999999988766543
Q ss_pred CCHHhHHHHHHHHhccCCHHHH
Q 009255 218 MNTITLNTILHTLCCEKKLDEA 239 (539)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a 239 (539)
-...+..++..+|..+..+.-
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhh
Confidence 456677788777777765543
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.50 E-value=4.8 Score=29.34 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 009255 62 KEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINR 124 (539)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (539)
=+.++-++.+......|++.+..+.+.+|.+.+++..|.++|+-++..- .+....|..+++-
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 3455666666666666777777777777777777777777777665432 2334456555544
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.27 E-value=6.9 Score=28.54 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 009255 341 VEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLI 402 (539)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 402 (539)
.-+..+-++.+....+-|++.+..+.+++|.+.+++.-|.++|+.+..+ ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3344455555555555666666666666666666666666666665554 222333454443
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.01 E-value=2.3 Score=35.58 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=35.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 009255 19 ALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQN 74 (539)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (539)
.+.+.|++++++.....-++.. |.|......++..++-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4456666777666666666654 556666666666677777777776666666654
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.00 E-value=17 Score=31.78 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=38.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHH----HHHHHCCCCCCHHhHHHHH
Q 009255 257 SYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDML----NELLQSGMIPDETTFNTII 332 (539)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 332 (539)
.|..+..-|.+.+++++|++++..-.. .+.+.|+...+.++. +-..+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555667777777777776644222 233445554444433 3344456667776666666
Q ss_pred HHHhcCC
Q 009255 333 HGFCSEG 339 (539)
Q Consensus 333 ~~~~~~~ 339 (539)
..+....
T Consensus 102 ~L~~~~~ 108 (336)
T 3lpz_A 102 GCLRLFQ 108 (336)
T ss_dssp HHHTTSC
T ss_pred HHHHhCC
Confidence 6665443
No 264
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=84.27 E-value=8 Score=29.61 Aligned_cols=47 Identities=9% Similarity=0.134 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 414 AFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 414 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+..+|..|...++-.. ...|...+..+...|++.+|.++|...++.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4445555555544333 2334444455555555555555555555544
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.08 E-value=21 Score=31.21 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=93.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHH----HHHHHcCCCCCHhhHHHHH
Q 009255 222 TLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLW----DEMKERQIMPSTFTYNAMI 297 (539)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 297 (539)
++.++..-|.+.+++++|.+++..-.. .+.+.|+...+-++. +-..+.+.++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345556668889999999887654322 234456655544443 4445566667765555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 009255 298 WGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILE 377 (539)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 377 (539)
..+.. ++|+......++. +|+.+=.. .......++.....+...|.+.+++.
T Consensus 102 ~L~~~------------------~~~~~p~r~~fi~---------~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 102 GCLRL------------------FQPGEPVRKRFVK---------EMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHTT------------------SCTTCHHHHHHHH---------HHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHh------------------CCCCCcHHHHHHH---------HHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 54433 2222222222221 22222111 11123447778888899999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009255 378 KALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMV 457 (539)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 457 (539)
+|+..|- . |..+.+..+..++.-+...+... .++..+...++ -|...++...|..++....
T Consensus 154 ~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 154 AAEKHLV--L--GTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 9988772 1 22323345544444333333211 11222222333 3455788999988777666
Q ss_pred H
Q 009255 458 E 458 (539)
Q Consensus 458 ~ 458 (539)
+
T Consensus 215 ~ 215 (336)
T 3lpz_A 215 S 215 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.91 E-value=9.1 Score=35.26 Aligned_cols=119 Identities=8% Similarity=-0.080 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChHHHHH
Q 009255 26 LNEVRDLLSDMKKQG-LVP-NRTTYNILVSGYCKLGWLKEAMRVVDLMTQN--KSLPDVWTYNMLINGWCNAGMLEEAFR 101 (539)
Q Consensus 26 ~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (539)
.++..+......+.. ... -..+...++..|.+.|+++.|.+++.++... +.......+-.+++.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 444445555554432 122 2336778888899999999999999888754 223345677788888888999999988
Q ss_pred HHHHHHhC---CCCCChhh--HHHHHHHHhccCCHhHHHHHHHHHHhC
Q 009255 102 LRKEMESL---KLLPDVVT--YNTLINRFFESGRSMEAFKLIDELDEH 144 (539)
Q Consensus 102 ~~~~~~~~---~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (539)
.+.++... +..|+... ...-+..+...+++..|.+.|-+....
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 88886532 22222221 111223345678898888888776543
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.56 E-value=40 Score=32.68 Aligned_cols=413 Identities=12% Similarity=0.072 Sum_probs=196.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh-hhHHHHHHH
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRT-TYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDV-WTYNMLING 89 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 89 (539)
.|.....+ .+.|++..+..+...+... +..+. .|..+...+ .....++.... +.+..-.|-. ..-...+..
T Consensus 9 ~~~~a~~a-~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~F---l~~~~~~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 9 RYAQIKQA-WDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNF---VRANPTLPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHH---HHHCCCChhHHHHHHHHHHH
Confidence 34444444 3567777776666655332 22111 222222111 11233333333 3332111211 222344455
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 009255 90 WCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKA 169 (539)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 169 (539)
+.+.+++...+.++.. .+.+...-.....+....|+..+|......+-..|.. .+..+..++..+.+.|.+.
T Consensus 82 l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt-- 153 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQD-- 153 (618)
T ss_dssp HHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSC--
T ss_pred HHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCC--
Confidence 6666676666554332 1334444455566666677766666655555443321 2333333333333333221
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHh-HHHHHHHHhccCCHHHHHHHHHHHhh
Q 009255 170 CKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTIT-LNTILHTLCCEKKLDEAYMLLNSASK 248 (539)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (539)
....+. -+......|+...|..+...+ +++... ...++.....-.. +......
T Consensus 154 --------------~~~~~~-R~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~---~~~~~~~--- 207 (618)
T 1qsa_A 154 --------------PLAYLE-RIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNT---VLTFART--- 207 (618)
T ss_dssp --------------HHHHHH-HHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGG---HHHHHHH---
T ss_pred --------------HHHHHH-HHHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHh---HHHHHhc---
Confidence 112222 223344566666666654432 222222 2223322222222 2221111
Q ss_pred cCCccCHh---hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhH----HHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009255 249 RGYYLDEV---SYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTY----NAMIWGLSQSGKTEQAIDMLNELLQSGM 321 (539)
Q Consensus 249 ~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (539)
. .++.. .+...+.-+.+ .+.+.|...+......... +.... ..++......+...++...+.......
T Consensus 208 ~--~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~- 282 (618)
T 1qsa_A 208 T--GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS- 282 (618)
T ss_dssp S--CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-
T ss_pred c--CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-
Confidence 1 11221 22222333333 4789999999888654322 33322 223333344453556666666655432
Q ss_pred CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 009255 322 IPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTL 401 (539)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 401 (539)
.+.......+....+.|+++.|...|..+.... .........+.+++...|+.++|..+|+.+... . ..|..+
T Consensus 283 -~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~l 355 (618)
T 1qsa_A 283 -QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMV 355 (618)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHH
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHH
Confidence 344444444555567799999999999886642 224555666788888999999999999998742 1 223333
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCC
Q 009255 402 ISSLCKERRLEDAFGLLSEMEEKKLGPD------RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTP 475 (539)
Q Consensus 402 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (539)
.. .+.|..-. . ....+.+. .......+..+...|....|...+..+.+..
T Consensus 356 Aa--~~Lg~~~~-~------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--------------- 411 (618)
T 1qsa_A 356 AA--QRIGEEYE-L------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--------------- 411 (618)
T ss_dssp HH--HHTTCCCC-C------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------
T ss_pred HH--HHcCCCCC-C------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC---------------
Confidence 22 22332100 0 00001110 0011223455677888888888887776532
Q ss_pred CCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 009255 476 EEIDPSSISYSEKINEHCSQGRYKDALQIFE 506 (539)
Q Consensus 476 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 506 (539)
+......++......|.++.++....
T Consensus 412 -----~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 412 -----SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 22333344555556676666654443
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.36 E-value=33 Score=29.73 Aligned_cols=167 Identities=13% Similarity=-0.026 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHH----HHHHHHhCCCCCCHHhHHHHHH
Q 009255 293 YNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQ----FHNKMVEKSFKPDIVTCNILLS 368 (539)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~ 368 (539)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|.+ +.+-..+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444457788899999888765321 2233455444443 3344445567777777777777
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----cC--CCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 009255 369 GLCREGILE-KALKFFRSWIL----KG--KAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALV 441 (539)
Q Consensus 369 ~~~~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (539)
.+......+ .=.+++++++. .| ..-++..+..++..|.+.|++.+|...|-. +-.-+...+..++.-+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence 665532111 11233333331 11 223677888888999999999888887641 21113444544444333
Q ss_pred hc---CCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 442 ES---GRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 442 ~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.. |...++--++.++ +--|...|+...|..+++...+
T Consensus 177 ~~~~~~~~~e~dlf~~Ra--------------------------------VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 177 CQVDDIEDSTVAEFFSRL--------------------------------VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHTTCCCHHHHHHHHHHH--------------------------------HHHHHHTTBHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHHHHH--------------------------------HHHHHHhcCHHHHHHHHHHHHH
Confidence 33 4433332222222 2235567888888888887654
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.82 E-value=25 Score=27.99 Aligned_cols=49 Identities=8% Similarity=-0.073 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 341 VEKALQFHNKMVEKSFKP-DIVTCNILLSGLCREGILEKALKFFRSWILK 389 (539)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 389 (539)
...+.++|..|...++-. -...|...+..+...|++.+|.++|+.-++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344444444444433221 2233344444444445555555555444444
No 270
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=77.41 E-value=8.5 Score=31.18 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 447 EEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 447 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
+++..+|..+...+.. ..-...|...+..+...|++.+|.++|+..++.+..|-.
T Consensus 131 ~~p~~if~~L~~~~IG----------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIG----------------QESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCS----------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcc----------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3555666666665543 222335556666666666666666666666665555543
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.29 E-value=22 Score=24.34 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=5.3
Q ss_pred HhHHHHHHHHHHh
Q 009255 61 LKEAMRVVDLMTQ 73 (539)
Q Consensus 61 ~~~a~~~~~~~~~ 73 (539)
.++|..+-+.+..
T Consensus 22 HqEA~tIAdwL~~ 34 (115)
T 2uwj_G 22 HEEALCIAEWLER 34 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.07 E-value=22 Score=24.31 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=54.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 009255 23 KGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRL 102 (539)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 102 (539)
....++|..+-+.+...+. ...+-..-+..+..+|+|++|..+.+... .||...|.+|-. .+.|..+++..-
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 4467888888888887652 22222233455678999999988766544 467777666544 477888888887
Q ss_pred HHHHHhCC
Q 009255 103 RKEMESLK 110 (539)
Q Consensus 103 ~~~~~~~~ 110 (539)
+.++...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 77777765
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.33 E-value=23 Score=24.25 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=4.4
Q ss_pred hcCChHHHHHH
Q 009255 92 NAGMLEEAFRL 102 (539)
Q Consensus 92 ~~g~~~~a~~~ 102 (539)
..|++++|..+
T Consensus 52 NrG~Yq~Al~l 62 (116)
T 2p58_C 52 NRGDYASALQQ 62 (116)
T ss_dssp HTTCHHHHHHH
T ss_pred cchhHHHHHHh
Confidence 33444444433
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.99 E-value=24 Score=24.21 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=60.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 009255 23 KGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRL 102 (539)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 102 (539)
....++|..+-+.+...+. ...+-..-+..+..+|+|++|..+.+... .||...|.+|-. .+.|..+++..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 4568899999998888753 22222333455779999999998877654 578777776654 477888888888
Q ss_pred HHHHHhCCCCCChhhH
Q 009255 103 RKEMESLKLLPDVVTY 118 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~ 118 (539)
+.++...| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 87887765 3443333
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.51 E-value=65 Score=29.08 Aligned_cols=166 Identities=9% Similarity=-0.017 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCC---CHHhHHHHHHHHhcc-CCHHHHHHHHHHHhhcCCccCHhhH--
Q 009255 186 VTYNTLIDANCKAGNMEEAFRMMDVMGRK-GLKM---NTITLNTILHTLCCE-KKLDEAYMLLNSASKRGYYLDEVSY-- 258 (539)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 258 (539)
.....|...|.+.|+.++..+++.....- +.-+ .......++..+... +..+.-.++.....+.... ....|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45567888899999999988888776432 1111 223455666666543 3334444444444332111 11222
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHh
Q 009255 259 ----GTLITGYFRDEKANRALKLWDEMKERQIMPS-----TFTYNAMIWGLSQSGKTEQAIDMLNELLQS--GMIPDETT 327 (539)
Q Consensus 259 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 327 (539)
..++..|...|++.+|.+++.++...-...| ...+..-+..|...++..++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2567777788888888777777765321112 123444455677777777777777766432 12223322
Q ss_pred HHH----HHHHHh-cCCCHHHHHHHHHHHH
Q 009255 328 FNT----IIHGFC-SEGQVEKALQFHNKMV 352 (539)
Q Consensus 328 ~~~----l~~~~~-~~~~~~~a~~~~~~~~ 352 (539)
... -...+. ..++|..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 211 122334 6777777777666554
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.32 E-value=34 Score=25.77 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 447 EEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 447 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
+++.++|..+...+.. ..-...|...+..+...|++++|.++|+..++.+..|-..
T Consensus 82 ~dp~~if~~L~~~~IG----------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIG----------------TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTT----------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCc----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3477888888777654 2333477788888888888888888888888877777543
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.12 E-value=86 Score=29.41 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 009255 45 RTTYNILVSGYCKLGWLKEAMRVVDLM 71 (539)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 71 (539)
...++.+++.|...+.++.|..+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 334455555555555555555555544
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.26 E-value=48 Score=24.97 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009255 413 DAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGK 461 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 461 (539)
++..+|..|...++-.. ...|...+..+...|++.+|.++|+..++.+.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 36777777777766444 44566677777778888888888888877663
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.10 E-value=91 Score=28.13 Aligned_cols=298 Identities=12% Similarity=-0.007 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCC---ChhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHhH--
Q 009255 151 VTHNIMIKWYCKEGKIDKACKIVRNMEENG-FSP---DCVTYNTLIDANCKA-GNMEEAFRMMDVMGRKGLKMNTITL-- 223 (539)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 223 (539)
.....|...|.+.|+.++..+++......= .-+ .......++..+... +..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 467788999999999999999888765320 011 123456677777654 3344444444444332111 11222
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHHhhcCCccC-----HhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHhh
Q 009255 224 ----NTILHTLCCEKKLDEAYMLLNSASKRGYYLD-----EVSYGTLITGYFRDEKANRALKLWDEMKER--QIMPSTFT 292 (539)
Q Consensus 224 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 292 (539)
..++..|...|++.+|..++..+.+.-...| ..++..-+..|...++..++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3678889999999999999888876421212 234555677888999999999999887543 22234433
Q ss_pred HHH----HHHHHH-cCCCHHHHHHHHHHHHHCCCCCCHH----hHHHHHHHHhcCCCHHHHHHHHH-HHHhCCCCCCHHh
Q 009255 293 YNA----MIWGLS-QSGKTEQAIDMLNELLQSGMIPDET----TFNTIIHGFCSEGQVEKALQFHN-KMVEKSFKPDIVT 362 (539)
Q Consensus 293 ~~~----l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 362 (539)
... -...+. ..+++..|...|-+..+.-...... ....++-+..-.++..+...++. .....-..|....
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHH
Confidence 322 223456 7899999999887765321111111 11111111122233223222222 1111112345555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE 442 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (539)
+..++.+| ..+++.+...+++..... ...|+.....+-..+.. --...+.++.. +-+..++..+...+.-
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~---pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYDT-----MLEQNLCRIIE---PYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHHH-----HHHHHHHHHHT---TCSEEEHHHHHHHHTC
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHH-----HHHHHHHHHhH---hhceeeHHHHHHHHCc
Confidence 55566554 445666666666554322 23344321111111000 00111112221 1123445555554432
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 009255 443 SGRLEEAQKFTSIMVETGK 461 (539)
Q Consensus 443 ~g~~~~A~~~~~~~~~~~~ 461 (539)
..++++..+.+++..+.
T Consensus 329 --s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --CHHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHHCCC
Confidence 56788888888887763
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.53 E-value=99 Score=27.41 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccC--CHHHHHHHHHHHhhcCCc
Q 009255 188 YNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEK--KLDEAYMLLNSASKRGYY 252 (539)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 252 (539)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.+ ..+...+++..+...+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 356677778888888888888887543221 1222233333444432 234566666666666544
No 281
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=57.12 E-value=83 Score=29.50 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 432 TYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 432 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
++..++....-...++.|..+|.++.... |+.. .|+.|+-.....|+.-+|.-.|-+.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-------------------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-------------------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC-------------------CCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 34456666666677889999999999997 6666 999999999999999999999888886
Q ss_pred cCCCCCHHHHHHHHHHH
Q 009255 511 KGIAINKSTYMNLMNGL 527 (539)
Q Consensus 511 ~~~~p~~~~~~~~l~~~ 527 (539)
. ..|-..+...+...+
T Consensus 215 ~-~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 215 V-KFPFPAASTNLQKAL 230 (497)
T ss_dssp S-SBCCHHHHHHHHHHH
T ss_pred c-CCCChhHHHHHHHHH
Confidence 3 356555555555444
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.11 E-value=66 Score=24.61 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 009255 379 ALKFFRSWILKGKAVD-SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD 429 (539)
Q Consensus 379 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 429 (539)
+..+|..|...|+... ...|...+..+...|++.+|..+|+..++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455666655544332 23455555556666666666666666666555554
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.10 E-value=90 Score=27.67 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=35.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCC
Q 009255 258 YGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGK--TEQAIDMLNELLQSGMIP 323 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 323 (539)
...++.-|...++.++|...++++...... .......+..++-+.++ .+...+++..+...++-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 345666677778888888888777532111 12233333344444332 345666666666665543
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.42 E-value=47 Score=27.87 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=10.4
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 009255 16 ILDALFKKGKLNEVRDLLS 34 (539)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~ 34 (539)
.+...++.|+.+.+..+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444566777655544443
No 285
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=53.12 E-value=76 Score=24.43 Aligned_cols=108 Identities=9% Similarity=-0.081 Sum_probs=64.4
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI 483 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (539)
.+.-.|.+.+++-++... .+..+...-.-++-+..++..|+..++.+++....-+..+.......... +.+..
T Consensus 42 ~LyyngEY~R~Lf~L~~l------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd-~~DkE 114 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKL------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD-PGDEE 114 (242)
T ss_dssp HHHHTTCHHHHHHHHHTC------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC-TTCHH
T ss_pred hhhhcchHhHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec-cchHH
Confidence 344578888888776532 12222222223566788999999999998865543221111111111111 23444
Q ss_pred -hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009255 484 -SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTY 520 (539)
Q Consensus 484 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 520 (539)
.++.++..+...|+.++|++.+..--. ..|=-++.
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~--~~~lf~~v 150 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFG--KSFLFSPV 150 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcC--CccccchH
Confidence 677888889999999999999987654 34444433
No 286
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=49.79 E-value=23 Score=23.39 Aligned_cols=17 Identities=12% Similarity=0.397 Sum_probs=12.4
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
+.|++++|+.+|.+.++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 57888888877776554
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.42 E-value=1.1e+02 Score=25.17 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=14.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 009255 16 ILDALFKKGKLNEVRDLLSDMKK 38 (539)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~ 38 (539)
-+..+....++++|..++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34556666666666666665543
No 288
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=48.14 E-value=25 Score=23.21 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=11.9
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
+.|++++|+.+|...++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 57777777777776554
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.04 E-value=47 Score=26.90 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 413 DAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.+..+|..|...|+-.. ...|...+..+...|++.+|.++|+..++..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44455555555554333 3344455555555666666666666665554
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.55 E-value=1.4e+02 Score=27.60 Aligned_cols=83 Identities=10% Similarity=-0.009 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 009255 24 GKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLR 103 (539)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 103 (539)
.+.+-|.++. .+.|+|--...|..-...+...|++++|.++-...++. .-.+..+.+.+-.+=..-|+..-.+.+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 4555444433 34455555666666677777888888887776665542 3335555544433333345555555666
Q ss_pred HHHHhCC
Q 009255 104 KEMESLK 110 (539)
Q Consensus 104 ~~~~~~~ 110 (539)
..+.+.|
T Consensus 419 ~~Ll~~g 425 (494)
T 1bpo_A 419 GILLDQG 425 (494)
T ss_dssp HHHHHHS
T ss_pred HHHhccC
Confidence 6655544
No 291
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=42.96 E-value=63 Score=20.63 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 487 EKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 487 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
.++..+...|++++|...|-+++. +.|+.......+.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~--Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIA--VCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HcCCHHHHHHHHH
Confidence 457778888889888887777776 6777666555544
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.23 E-value=1.3e+02 Score=23.83 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=6.6
Q ss_pred ChhhHHHHHHHHHhcCC
Q 009255 79 DVWTYNMLINGWCNAGM 95 (539)
Q Consensus 79 ~~~~~~~l~~~~~~~g~ 95 (539)
+...-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333333344444443
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.63 E-value=1.1e+02 Score=22.78 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=38.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 34 SDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
+.+.+.|+.+++. -..++..+...+..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3455666665554 3345555555566667888888887766655666655556666665543
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.08 E-value=1.1e+02 Score=22.86 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 34 SDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
+.+.+.|+.+++ .-..++..+...+..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345566655433 34455566666666777888888887766555665655556666665543
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.88 E-value=78 Score=29.71 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSW 386 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 386 (539)
..++.+++.|...+.++.|.++..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 34555555566666666666655554
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.77 E-value=33 Score=28.50 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=9.1
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 009255 22 KKGKLNEVRDLLSDMKKQG 40 (539)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~ 40 (539)
+.|+.+....+++.+.+.+
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 4455555444444444443
No 297
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.43 E-value=1.1e+02 Score=22.44 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=37.6
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 35 DMKKQGLVPNRTTYNILVSGYCKLG-WLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
.+.+.|..+++. ...++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355566665554 344555565555 6677888888887776666666655566666665543
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.98 E-value=1e+02 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 009255 259 GTLITGYFRDEKANRALKLWDEMK 282 (539)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~ 282 (539)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555666666666666666653
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.93 E-value=94 Score=23.08 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 009255 34 SDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGM 95 (539)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (539)
+.+.+.|+.+++. ...++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3455566665554 234444555555 56777888877776666566655555566665554
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.74 E-value=41 Score=27.89 Aligned_cols=188 Identities=12% Similarity=-0.034 Sum_probs=89.9
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChh-------hHHHHHHHHH--hcCChHHHHHHHHHHHhC---------CCC-
Q 009255 52 VSGYCKLGWLKEAMRVVDLMTQNKSLPDVW-------TYNMLINGWC--NAGMLEEAFRLRKEMESL---------KLL- 112 (539)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~---------~~~- 112 (539)
+...++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-... .+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 344557788888888888777665554422 2233433332 567777776666654321 111
Q ss_pred CChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCCHhHHHHHHHHH
Q 009255 113 PDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVT----------------HNIMIKWYCKEGKIDKACKIVRNM 176 (539)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~a~~~~~~~ 176 (539)
.|...++ .+...+..|+.+-+. .+.+.|..++... -...+...+..|+.+- ++.+
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~----v~~L 159 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYVE----LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI----VHYL 159 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH----HHHH
T ss_pred cccCCCC-HHHHHHHcCCHHHHH----HHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH----HHHH
Confidence 1112222 233445567765443 3444555444322 1233444566777554 4444
Q ss_pred HH---cCCCCCh---hhHHHHHHHHHhcC-C---HHHHHHHHHHHhhCCCCC----------CHHhHHHHHHHHhccCCH
Q 009255 177 EE---NGFSPDC---VTYNTLIDANCKAG-N---MEEAFRMMDVMGRKGLKM----------NTITLNTILHTLCCEKKL 236 (539)
Q Consensus 177 ~~---~~~~~~~---~~~~~l~~~~~~~~-~---~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~ 236 (539)
.+ .|..++. .-.+.|..+..... . .+...++++.+.+.|..+ +..- .+.+...+..|+.
T Consensus 160 l~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g-~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG-LSPLMMAAKTGKI 238 (260)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS-CCHHHHHHHTTCH
T ss_pred HhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCC-CCHHHHHHHcCCH
Confidence 55 4444432 23334443332221 1 222234444444332211 1111 1234445667888
Q ss_pred HHHHHHHHHHhhc
Q 009255 237 DEAYMLLNSASKR 249 (539)
Q Consensus 237 ~~a~~~~~~~~~~ 249 (539)
+-+..+++.-...
T Consensus 239 ~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 239 GIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCc
Confidence 8877777765543
No 301
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=38.33 E-value=63 Score=21.65 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009255 433 YAAIHTALVESGRLEEAQKFTSIMV 457 (539)
Q Consensus 433 ~~~l~~~~~~~g~~~~A~~~~~~~~ 457 (539)
+......+.+.|++++|+++.+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445667777888888877776654
No 302
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.23 E-value=1.1e+02 Score=22.83 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=38.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 34 SDMKKQGLVPNRTTYNILVSGYCKLG-WLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
+.+.+.|+.+++. ...++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3455666665554 334555555555 5667888888887776666666655566666666543
No 303
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.31 E-value=1.6e+02 Score=23.65 Aligned_cols=119 Identities=8% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--ccCCHhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCC----------------hHHHHHHHHH
Q 009255 46 TTYNILVSGYC--KLGWLKEAMRVVDLMTQNKSLPDVW--TYNMLINGWCNAGM----------------LEEAFRLRKE 105 (539)
Q Consensus 46 ~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~----------------~~~a~~~~~~ 105 (539)
..+..+.+++. +.+++.+-+.+++.+...+...... --..++..+.+-.+ .+.|+.+|+.
T Consensus 18 fyf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~ 97 (235)
T 3bu8_A 18 FYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEM 97 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHH
Q ss_pred HHhCCCCCChh-------hHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 009255 106 MESLKLLPDVV-------TYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKI 166 (539)
Q Consensus 106 ~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (539)
+.+....++.. .-...+..|.+.|.+++|.+++++.... .++..-...-+....+..+.
T Consensus 98 I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 98 IKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHTCT
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccCc
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.30 E-value=72 Score=24.32 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=42.2
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCh
Q 009255 27 NEVRDLLSD-MKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQN--KSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 27 ~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
+.+.+-+.+ +.+.|+..++. ...++..+...++.-.|.++++.+.+. ++..+..|...-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444443 44456665443 455666666767777888888888776 5555666655556666666654
No 305
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.07 E-value=67 Score=23.32 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=19.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 009255 16 ILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLG 59 (539)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 59 (539)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444455555555554443334444444444444433
No 306
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=36.39 E-value=1.5e+02 Score=28.21 Aligned_cols=91 Identities=9% Similarity=0.036 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 9 DNVTYNTILDALF--KKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 9 ~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
+...|..-+..+. ...+....+...+.++.+-.--+..-..-++..|.+.|-.+.|.++++.+-.+-.. +...+ ..
T Consensus 478 ~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eA 555 (570)
T 3f3f_C 478 DKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ES 555 (570)
T ss_dssp CTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------
T ss_pred CCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HH
Q ss_pred HHHHHhcCChHHHHH
Q 009255 87 INGWCNAGMLEEAFR 101 (539)
Q Consensus 87 ~~~~~~~g~~~~a~~ 101 (539)
+..|++.|+++.+..
T Consensus 556 L~~f~rA~~~~~Vk~ 570 (570)
T 3f3f_C 556 IANFSRAGKYELVKS 570 (570)
T ss_dssp ---------------
T ss_pred HHHHHHcCChhhccC
No 307
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.64 E-value=1.8e+02 Score=24.02 Aligned_cols=11 Identities=0% Similarity=-0.335 Sum_probs=4.9
Q ss_pred HHHccCCHhHH
Q 009255 54 GYCKLGWLKEA 64 (539)
Q Consensus 54 ~~~~~g~~~~a 64 (539)
..++.|+.+..
T Consensus 11 ~A~~~g~~~~v 21 (285)
T 1wdy_A 11 KAVQNEDVDLV 21 (285)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHcCCHHHH
Confidence 33445554433
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.32 E-value=3.3e+02 Score=26.67 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 009255 155 IMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCK 197 (539)
Q Consensus 155 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (539)
.++-.+.++|++++|.++.++.... +..-...+...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 3566678899999999988765432 11112355556666653
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.03 E-value=53 Score=24.46 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCCCCcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 009255 3 GFGCLPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWL 61 (539)
Q Consensus 3 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 61 (539)
+.|.+++.. =..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 12 ~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 12 QRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 456665543 244566666666 789999999999887667777776677777766643
No 310
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.76 E-value=1.5e+02 Score=22.56 Aligned_cols=50 Identities=4% Similarity=0.046 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CHHhHHHHHH-H-----HhcCCCHHHHHHHHHHHHh
Q 009255 304 GKTEQAIDMLNELLQSGMIP--DETTFNTIIH-G-----FCSEGQVEKALQFHNKMVE 353 (539)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 353 (539)
|++-+|-++++.+......+ ....+..+|+ . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665543333 3334444444 2 1234566666665555543
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.72 E-value=2e+02 Score=29.77 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcC
Q 009255 152 THNIMIKWYCKEGKIDKACKIVRNMEENGFSPDC----VTYNTLIDANCKAG 199 (539)
Q Consensus 152 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 199 (539)
-|..++..+-+.+.++.+.++-+...+.--..|. ..|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677888888889998888888887764222222 25666666665544
No 312
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.49 E-value=1.7e+02 Score=23.41 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=8.8
Q ss_pred HHHHhccCCHHHHHHHHH
Q 009255 227 LHTLCCEKKLDEAYMLLN 244 (539)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~ 244 (539)
+...+..|+.+-+..+++
T Consensus 181 L~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLE 198 (240)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 334445566655444443
No 313
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.47 E-value=1.8e+02 Score=23.34 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=7.7
Q ss_pred ccCCHhHHHHHHHHHHh
Q 009255 57 KLGWLKEAMRVVDLMTQ 73 (539)
Q Consensus 57 ~~g~~~~a~~~~~~~~~ 73 (539)
..|+.+.+..+++.+.+
T Consensus 18 ~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 44444444444444433
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.21 E-value=2.8e+02 Score=25.59 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=46.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhH
Q 009255 354 KSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTY 433 (539)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 433 (539)
.|++-....|..-.+.+...|++++|.++--.... |.--++.+.+.+-.+=...|...--+.+|.-+.+.| ..+..--
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 34444444555555566666777666665543322 122244444433332233344445555555555554 3343323
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 009255 434 AAIHTALVESGRLEEAQKFT 453 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~ 453 (539)
..+++.-..+|+.+-..+|+
T Consensus 433 lEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred hHHhHHHHhccHHHHHHHHH
Confidence 34455555566655444443
No 315
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.03 E-value=64 Score=23.77 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=22.6
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 009255 50 ILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGM 95 (539)
Q Consensus 50 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (539)
.++..+...++.-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444444444555555555555444444444444555555544
No 316
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.78 E-value=2e+02 Score=23.63 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=11.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 009255 332 IHGFCSEGQVEKALQFHNKMV 352 (539)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~ 352 (539)
+..+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445555555555555555444
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.21 E-value=3.2e+02 Score=28.26 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=30.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009255 331 IIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWI 387 (539)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 387 (539)
++..|...|.++-+.++..- .+.++..-..++.+|...|++++|...|+++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55556666666655443322 22233333456677777888888888887653
No 318
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.09 E-value=1.7e+02 Score=22.74 Aligned_cols=175 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
.+|...-...+.++.+.+.......+.+.+. .++.......+.++...|+.+....+.+.+. .++...-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~----d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIKALK----DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc----CCCHHHHHHH
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 009255 87 INGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKI 166 (539)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (539)
+.++.+.|+.+....+.+.+. .++..+-...+.++...+..+....+...+... +..+-...+.++.+.|.
T Consensus 97 ~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~A~~aL~~~~~- 167 (201)
T 3ltj_A 97 AVALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDE----DGWVRQSAADALGEIGG- 167 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCc-
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 009255 167 DKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNM 201 (539)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (539)
.++...+..+.+. ++..+-...+.++.+.+..
T Consensus 168 ~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 168 ERVRAAMEKLAET---GTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC--
T ss_pred hhHHHHHHHHHhC---CCHHHHHHHHHHHHHHHhh
No 319
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.78 E-value=1.9e+02 Score=23.16 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=45.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh---hHHHHHHHHH
Q 009255 17 LDALFKKGKLNEVRDLLSDMKKQGLVPNRTT--YNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVW---TYNMLINGWC 91 (539)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 91 (539)
+...++.|+.+-+..+++.+.+.+..++... -.+.+...+..|+.+ +++.+.+.|..++.. ..+ .+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQT-AAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCC-HHHHHH
Confidence 4445678999988888887776654443221 122344445667765 444444555443322 122 333445
Q ss_pred hcCChHHHHHHHHHH
Q 009255 92 NAGMLEEAFRLRKEM 106 (539)
Q Consensus 92 ~~g~~~~a~~~~~~~ 106 (539)
..|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 667766555555443
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.50 E-value=1.5e+02 Score=22.21 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 009255 190 TLIDANCKAGNMEEAFRMMDVM 211 (539)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~ 211 (539)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444555555555555555555
No 321
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.37 E-value=1.4e+02 Score=21.57 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 009255 364 NILLSGLCREGILEKALKFFRSW 386 (539)
Q Consensus 364 ~~l~~~~~~~g~~~~A~~~~~~~ 386 (539)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555566666666666554
No 322
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.49 E-value=3.8e+02 Score=26.24 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=39.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHc---
Q 009255 191 LIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFR--- 267 (539)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 267 (539)
....+.-.|+++.|++.+... ...+...+...+..+.-.+- . +.+..........-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---D----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---C----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 445556689999999988643 23344444444443332221 1 111111000113336677777764
Q ss_pred cCCHHHHHHHHHHH
Q 009255 268 DEKANRALKLWDEM 281 (539)
Q Consensus 268 ~~~~~~a~~~~~~~ 281 (539)
..+..+|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56777787777655
No 323
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.46 E-value=62 Score=21.85 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=11.7
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
..|++++|+.+|...++
T Consensus 27 ~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 27 AESRYQQALVCYQEGID 43 (93)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 56777777777776544
No 324
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=31.04 E-value=48 Score=20.05 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 62 KEAMRVVDLMTQNKSLPDVWTYNMLINGW 90 (539)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (539)
++|.+.|.+|++..-.++..+|...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555555443333445555555555
No 325
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.72 E-value=99 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=14.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 009255 259 GTLITGYFRDEKANRALKLWDEMK 282 (539)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~ 282 (539)
..++.-|...++.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555666666666666666653
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.66 E-value=98 Score=23.56 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHhcCC
Q 009255 295 AMIWGLSQSGKTEQAIDMLNELLQS--GMIPDETTFNTIIHGFCSEG 339 (539)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 339 (539)
.++..+...+.+-.|.++++.+.+. ++..+..|...-+..+...|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444455555555555544 44444444444444444444
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.65 E-value=1.6e+02 Score=21.72 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=8.9
Q ss_pred hcCCHhHHHHHHHHHHHcC
Q 009255 162 KEGKIDKACKIVRNMEENG 180 (539)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~ 180 (539)
..+..-.|.++++.+.+.+
T Consensus 33 ~~~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKF 51 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGC
T ss_pred hCCCCCCHHHHHHHHHHhC
Confidence 3334444555555554443
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.40 E-value=1.9e+02 Score=22.35 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=8.4
Q ss_pred HhcCChHHHHHHHH
Q 009255 21 FKKGKLNEVRDLLS 34 (539)
Q Consensus 21 ~~~~~~~~a~~~~~ 34 (539)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 45667666665554
No 329
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=30.19 E-value=2.4e+02 Score=23.52 Aligned_cols=48 Identities=8% Similarity=0.098 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHh---CCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHHc
Q 009255 412 EDAFGLLSEMEE---KKLGPDRYTYAAIHTA-----LVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 412 ~~A~~~~~~~~~---~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~ 459 (539)
+.|.+.|+++.+ ..++|+.++...|+-. |.-.+++++|.++.+++...
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566665542 2578877666554432 33579999988877776543
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.62 E-value=1.9e+02 Score=22.05 Aligned_cols=49 Identities=10% Similarity=-0.053 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHccCCHhHHHHHHHHHH
Q 009255 24 GKLNEVRDLLSDMKKQGLVP--NRTTYNILVS-G-----YCKLGWLKEAMRVVDLMT 72 (539)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~ 72 (539)
|++-+|-++|+..-.....+ ....+..||. . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555554443222 2233333433 1 123455555555554443
No 331
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.49 E-value=2.5e+02 Score=23.53 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=9.1
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 009255 192 IDANCKAGNMEEAFRMMDV 210 (539)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~ 210 (539)
+...+..|+.+-+.-+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3334455665544444443
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.03 E-value=88 Score=22.88 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=39.6
Q ss_pred CCCCCcChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 009255 3 GFGCLPDNVTYNTILDALFKKG-KLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWL 61 (539)
Q Consensus 3 ~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 61 (539)
+.|.+++.. =..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 11 ~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 11 KAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345554433 234667777776 7889999999999987667777776667777666643
No 333
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.74 E-value=98 Score=24.08 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=8.6
Q ss_pred HHccCCHhHHHHHHH
Q 009255 55 YCKLGWLKEAMRVVD 69 (539)
Q Consensus 55 ~~~~g~~~~a~~~~~ 69 (539)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345666666555554
No 334
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.18 E-value=1.2e+02 Score=19.45 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=33.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 009255 35 DMKKQGLVPNRTTYNILVSGYCKLG-WLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGM 95 (539)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (539)
.+.+.|+..++.- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455565555433 34445555443 455667777777666555555555555555555553
No 335
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.68 E-value=1.9e+02 Score=21.54 Aligned_cols=57 Identities=9% Similarity=0.163 Sum_probs=23.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 009255 141 LDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKA 198 (539)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (539)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 34445443332 2233344444444555666666655544333333333333333333
No 336
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.42 E-value=2.1e+02 Score=22.06 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=27.7
Q ss_pred HHHHhccCCHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHH-hcCCHhHHHHHHHHHHHcCCCCC
Q 009255 122 INRFFESGRSMEAFKLIDELDEHGIKPNAVT---HNIMIKWYC-KEGKIDKACKIVRNMEENGFSPD 184 (539)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~ 184 (539)
+...+..|+.+.-.++.+.+.+.|..++... .+.|..++. ...+.....++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3344445555544555555555555444321 111211111 12233344556666666665544
No 337
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.34 E-value=81 Score=20.72 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=12.8
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
..|++++|+.+|...++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 56888888888877655
No 338
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.00 E-value=1.9e+02 Score=21.52 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=7.0
Q ss_pred HhHHHHHHHHHHHcC
Q 009255 166 IDKACKIVRNMEENG 180 (539)
Q Consensus 166 ~~~a~~~~~~~~~~~ 180 (539)
.-.|.++++.+.+.+
T Consensus 33 h~sa~ei~~~l~~~~ 47 (150)
T 2w57_A 33 HISAEELYKKLIDLG 47 (150)
T ss_dssp SEEHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC
Confidence 344555555554443
No 339
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.93 E-value=61 Score=21.03 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=22.8
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
-...+++-|+..|+|+.|+.+|+.+++
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 445678889999999999999998775
No 340
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=25.19 E-value=3e+02 Score=22.97 Aligned_cols=45 Identities=4% Similarity=-0.039 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 009255 291 FTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGF 335 (539)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (539)
...-.++...-+.+++++....++++.+.+...+..--+.+-.+|
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAY 76 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 76 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 333444455556666666666666666555555555544444444
No 341
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.10 E-value=1e+02 Score=22.61 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=24.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 009255 15 TILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGW 60 (539)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 60 (539)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555555556666666666665544455554444444444443
No 342
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.08 E-value=84 Score=20.80 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.1
Q ss_pred HhhcCCHHHHHHHHHHHHHc-----CCCCCHHH
Q 009255 492 HCSQGRYKDALQIFEETRQK-----GIAINKST 519 (539)
Q Consensus 492 ~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~ 519 (539)
+-..|++++|+.+|...++. ...||...
T Consensus 26 ~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~ 58 (86)
T 4a5x_A 26 LDSESRYPQALVCYQEGIDLLLQVLKGTKDNTK 58 (86)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 34678999998888876642 24677653
No 343
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.84 E-value=1.2e+02 Score=22.00 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=29.9
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 49 NILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
..++..+...+..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 345555555566667777888777766555665655556666655543
No 344
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=24.73 E-value=1.1e+02 Score=20.74 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 487 EKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 487 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
.++..+...|+++.|...|-+++. +.|+......++.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~--Vc~qP~~LL~i~q 61 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIA--VCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HHSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HcCCHHHHHHHHH
Confidence 456667777777777775555554 4566555544443
No 345
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.72 E-value=3.4e+02 Score=23.51 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCh
Q 009255 20 LFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNA---GML 96 (539)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 96 (539)
+...|++.+|+..|+.++ +...+.......+.+++.++++...+. +...-+..-.+. .+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrEY-------ilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETAREY-------ILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTCCTTCH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCcccH
Q ss_pred HHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 009255 97 EEAFRLRKEMESLKLLPD--VVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDK 168 (539)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (539)
.+.+++-.-+..-.+.|. .-+....+....+.+++..|-.+.+++++.+..+....-..-+...+...-.+.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da 260 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDA 260 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCS
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
No 346
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=24.71 E-value=80 Score=22.48 Aligned_cols=17 Identities=35% Similarity=0.763 Sum_probs=12.4
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
..|++++|+.+|...++
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 46888888887777654
No 347
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.62 E-value=80 Score=18.59 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=11.1
Q ss_pred HHHHhcCC--HHHHHHHHHHH
Q 009255 438 TALVESGR--LEEAQKFTSIM 456 (539)
Q Consensus 438 ~~~~~~g~--~~~A~~~~~~~ 456 (539)
.++...|+ ++.|.+++.++
T Consensus 28 ~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 28 RALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHh
Confidence 34444555 66676666655
No 348
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.36 E-value=1e+02 Score=19.10 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCK 57 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (539)
.++-++..+++..-.++++..+++..+.| ..+...|..-.+.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34555666666666667777777776666 3455556555555544
No 349
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.09 E-value=3.2e+02 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=8.8
Q ss_pred HHHHhccCCHHHHHHHHHH
Q 009255 227 LHTLCCEKKLDEAYMLLNS 245 (539)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~ 245 (539)
+...+..|..+-+..+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3334455555544444443
No 350
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=22.70 E-value=3.3e+02 Score=22.55 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHh---CCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHH
Q 009255 412 EDAFGLLSEMEE---KKLGPDRYTYAAIHTA-----LVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 412 ~~A~~~~~~~~~---~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~ 458 (539)
+.|.+.|+++.+ ..++|+.++...|+-- |.-.+++++|.++.+++..
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666665543 2478877666554432 3457999998887776654
No 351
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.37 E-value=3.2e+02 Score=22.37 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHh---CCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHH
Q 009255 412 EDAFGLLSEMEE---KKLGPDRYTYAAIHTA-----LVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 412 ~~A~~~~~~~~~---~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~ 458 (539)
+.+.+.|+++.+ ..++|+.++...|+-- |.-.+++++|.++.+++..
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666665543 2578887666554432 3457999998887776654
No 352
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.00 E-value=2.9e+02 Score=21.62 Aligned_cols=167 Identities=11% Similarity=-0.004 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 009255 27 NEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEM 106 (539)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 106 (539)
.++...+-..+. .++.......+..+.+.|+.+ +...+..+... ++...-...+.++.+.|+.+ +...+..+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKA 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHH
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHH
Confidence 334444444443 357777777777787777743 44444444442 46666666667777777643 34444444
Q ss_pred HhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 009255 107 ESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCV 186 (539)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (539)
.. .++..+-...+.++...++.+ +...+..+.. .++...-...+.++.+.|+.+ +...+..+.+ .++..
T Consensus 90 l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~ 158 (211)
T 3ltm_A 90 LK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGW 158 (211)
T ss_dssp TT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHH
T ss_pred Hc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHH
Confidence 43 356666666667777666643 3344444443 356666666677777776643 3444444443 35555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009255 187 TYNTLIDANCKAGNMEEAFRMMDVMGR 213 (539)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (539)
+-...+.++...+. .++...+..+..
T Consensus 159 vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 159 VRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 65666666666665 344444444443
No 353
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.94 E-value=1.7e+02 Score=27.02 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=13.6
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhC
Q 009255 48 YNILVSGYCKLGWLKEAMRVVDLMTQN 74 (539)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (539)
.+.+...|.+.|+...+..++..+...
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~ 205 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPK 205 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 344445555555555555555544443
No 354
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.67 E-value=1.7e+02 Score=19.81 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=22.6
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 009255 59 GWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEA 99 (539)
Q Consensus 59 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 99 (539)
...+.|.++++.+.++|+ .+|..++.++...|...-|
T Consensus 51 t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 456777777777776543 3666666666555554443
No 355
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.62 E-value=4.1e+02 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=18.3
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHH
Q 009255 118 YNTLINRFFESGRSMEAFKLIDEL 141 (539)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~ 141 (539)
...++.-|...|+.++|...++++
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 456777788888888888887775
No 356
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=20.22 E-value=94 Score=21.05 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=29.7
Q ss_pred HHHHccCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 403 SSLCKERRLEDAFGLLSEMEEK-KLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 403 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..|...++.+..+.++..+.+. .-.|....=.+....+ ..++.+|.+++++..+.+
T Consensus 18 r~~f~~~n~~~m~~~L~pLh~~l~~~peT~~E~sF~~~f--G~~L~~A~~~~~~y~~t~ 74 (94)
T 3fap_B 18 RLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAY--GRDLMEAQEWCRKYMKSG 74 (94)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHC
T ss_pred HHHhccCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHhC
Confidence 3455667777777776665433 1123211111222333 235677888877777665
Done!