Query 009256
Match_columns 539
No_of_seqs 483 out of 3664
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 22:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11730 fadB multifunctional 100.0 5.8E-99 1E-103 832.2 56.7 534 1-539 1-545 (715)
2 TIGR02437 FadB fatty oxidation 100.0 1E-98 2E-103 827.8 56.3 534 1-539 1-545 (714)
3 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.7E-98 4E-103 827.6 55.7 533 1-539 10-566 (737)
4 TIGR02440 FadJ fatty oxidation 100.0 1.4E-96 3E-101 811.4 55.8 514 7-539 3-536 (699)
5 PRK11154 fadJ multifunctional 100.0 4.7E-96 1E-100 809.4 56.5 529 5-539 6-541 (708)
6 KOG1680 Enoyl-CoA hydratase [L 100.0 2.3E-55 4.9E-60 409.9 22.0 244 12-295 44-288 (290)
7 PRK05862 enoyl-CoA hydratase; 100.0 1.8E-53 4E-58 418.0 26.6 253 1-294 1-254 (257)
8 PRK07658 enoyl-CoA hydratase; 100.0 1.6E-53 3.4E-58 419.0 25.8 253 5-295 3-255 (257)
9 PRK09076 enoyl-CoA hydratase; 100.0 3.1E-53 6.7E-58 416.4 26.0 252 5-295 4-256 (258)
10 PRK05980 enoyl-CoA hydratase; 100.0 3.6E-53 7.9E-58 416.9 25.7 255 1-294 1-260 (260)
11 PRK08140 enoyl-CoA hydratase; 100.0 5.3E-53 1.1E-57 416.2 26.5 255 1-294 1-259 (262)
12 PRK06142 enoyl-CoA hydratase; 100.0 3.4E-53 7.4E-58 419.6 25.2 256 1-294 2-270 (272)
13 PRK08150 enoyl-CoA hydratase; 100.0 5.9E-53 1.3E-57 413.1 26.5 252 4-296 2-254 (255)
14 PRK05809 3-hydroxybutyryl-CoA 100.0 6.9E-53 1.5E-57 414.9 26.0 255 1-294 1-257 (260)
15 PRK06143 enoyl-CoA hydratase; 100.0 8.6E-53 1.9E-57 412.2 26.0 252 1-291 3-256 (256)
16 PRK08139 enoyl-CoA hydratase; 100.0 9E-53 1.9E-57 414.4 26.3 255 2-295 9-264 (266)
17 PRK09674 enoyl-CoA hydratase-i 100.0 1.4E-52 3.1E-57 411.0 26.9 250 5-295 3-253 (255)
18 PRK05995 enoyl-CoA hydratase; 100.0 2E-52 4.3E-57 412.1 27.9 256 1-295 1-260 (262)
19 PRK06563 enoyl-CoA hydratase; 100.0 1.4E-52 3.1E-57 411.3 25.8 251 6-294 1-252 (255)
20 PRK09245 enoyl-CoA hydratase; 100.0 1.7E-52 3.6E-57 413.6 26.2 255 1-294 1-263 (266)
21 PRK05981 enoyl-CoA hydratase; 100.0 2E-52 4.3E-57 413.1 26.0 256 1-294 1-263 (266)
22 PRK05674 gamma-carboxygeranoyl 100.0 3.1E-52 6.7E-57 410.4 27.0 257 1-295 1-262 (265)
23 PRK06495 enoyl-CoA hydratase; 100.0 2.3E-52 4.9E-57 410.1 25.8 253 1-294 1-254 (257)
24 PLN02888 enoyl-CoA hydratase 100.0 5E-52 1.1E-56 408.6 28.0 254 3-297 8-264 (265)
25 PRK06494 enoyl-CoA hydratase; 100.0 3.8E-52 8.2E-57 408.9 26.8 252 1-294 1-256 (259)
26 PRK07468 enoyl-CoA hydratase; 100.0 4.4E-52 9.6E-57 409.2 27.0 257 1-295 1-260 (262)
27 PRK07657 enoyl-CoA hydratase; 100.0 3.2E-52 7E-57 409.9 26.0 255 1-294 1-257 (260)
28 PRK03580 carnitinyl-CoA dehydr 100.0 4.6E-52 1E-56 408.8 26.5 253 1-294 1-258 (261)
29 TIGR02280 PaaB1 phenylacetate 100.0 3.6E-52 7.7E-57 408.7 25.6 250 6-294 1-253 (256)
30 PRK07799 enoyl-CoA hydratase; 100.0 5.3E-52 1.1E-56 409.1 26.8 253 3-294 4-260 (263)
31 PLN02600 enoyl-CoA hydratase 100.0 3.5E-52 7.6E-57 407.0 25.0 245 12-294 2-248 (251)
32 PRK08138 enoyl-CoA hydratase; 100.0 6.9E-52 1.5E-56 407.6 27.1 251 4-294 7-258 (261)
33 PRK06210 enoyl-CoA hydratase; 100.0 5.6E-52 1.2E-56 411.2 26.6 256 1-294 2-269 (272)
34 PRK08252 enoyl-CoA hydratase; 100.0 6.2E-52 1.3E-56 406.2 26.6 250 1-294 1-251 (254)
35 PRK06127 enoyl-CoA hydratase; 100.0 5.3E-52 1.2E-56 409.9 26.0 255 3-295 10-267 (269)
36 PRK08258 enoyl-CoA hydratase; 100.0 5.7E-52 1.2E-56 411.4 26.3 253 5-295 18-275 (277)
37 PRK09120 p-hydroxycinnamoyl Co 100.0 7E-52 1.5E-56 409.7 26.4 250 4-291 8-264 (275)
38 PRK07511 enoyl-CoA hydratase; 100.0 1E-51 2.2E-56 406.6 26.3 255 1-294 1-258 (260)
39 PLN02664 enoyl-CoA hydratase/d 100.0 5.6E-52 1.2E-56 411.1 24.2 255 2-294 3-272 (275)
40 PRK07938 enoyl-CoA hydratase; 100.0 7.2E-52 1.6E-56 404.0 24.5 247 6-292 3-249 (249)
41 TIGR01929 menB naphthoate synt 100.0 1.2E-51 2.6E-56 405.1 25.4 253 4-294 2-256 (259)
42 TIGR03210 badI 2-ketocyclohexa 100.0 2.1E-51 4.5E-56 402.7 26.8 251 3-295 1-254 (256)
43 PRK07659 enoyl-CoA hydratase; 100.0 1.5E-51 3.3E-56 404.9 25.1 251 4-294 6-257 (260)
44 PRK06688 enoyl-CoA hydratase; 100.0 3.1E-51 6.6E-56 403.4 26.5 254 1-294 1-256 (259)
45 PRK11423 methylmalonyl-CoA dec 100.0 2.5E-51 5.4E-56 403.0 25.8 253 1-294 1-258 (261)
46 PRK07260 enoyl-CoA hydratase; 100.0 5.1E-51 1.1E-55 400.2 26.6 251 3-291 1-255 (255)
47 PRK08260 enoyl-CoA hydratase; 100.0 4.9E-51 1.1E-55 408.3 26.6 259 1-297 1-278 (296)
48 PRK07396 dihydroxynaphthoic ac 100.0 6.1E-51 1.3E-55 402.9 26.8 253 3-295 12-267 (273)
49 PRK06144 enoyl-CoA hydratase; 100.0 4.4E-51 9.6E-56 401.8 25.5 250 3-294 7-259 (262)
50 PLN03214 probable enoyl-CoA hy 100.0 4.2E-51 9.2E-56 404.1 25.3 256 4-296 11-270 (278)
51 PRK07327 enoyl-CoA hydratase; 100.0 7.6E-51 1.7E-55 401.4 26.5 251 3-294 10-265 (268)
52 PRK05864 enoyl-CoA hydratase; 100.0 8.1E-51 1.8E-55 402.9 26.5 255 4-295 9-273 (276)
53 PRK08259 enoyl-CoA hydratase; 100.0 9.6E-51 2.1E-55 397.3 25.9 248 1-291 1-249 (254)
54 PRK06023 enoyl-CoA hydratase; 100.0 1.6E-50 3.5E-55 395.6 26.1 247 1-289 1-251 (251)
55 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.8E-50 3.9E-55 394.4 26.0 245 6-295 3-249 (251)
56 PRK12478 enoyl-CoA hydratase; 100.0 2E-50 4.4E-55 402.9 26.8 254 1-296 2-280 (298)
57 PRK05870 enoyl-CoA hydratase; 100.0 1.3E-50 2.9E-55 395.7 24.6 247 1-289 1-249 (249)
58 PLN02921 naphthoate synthase 100.0 4.1E-50 8.9E-55 403.3 27.5 254 3-295 64-321 (327)
59 COG1024 CaiD Enoyl-CoA hydrata 100.0 3E-50 6.4E-55 395.5 25.4 252 2-293 3-256 (257)
60 PRK06190 enoyl-CoA hydratase; 100.0 6E-50 1.3E-54 391.7 27.2 251 1-292 1-255 (258)
61 COG1250 FadB 3-hydroxyacyl-CoA 100.0 3.1E-50 6.8E-55 394.0 25.1 233 307-539 2-236 (307)
62 PRK07509 enoyl-CoA hydratase; 100.0 4.8E-50 1E-54 395.4 25.8 250 4-294 3-260 (262)
63 PRK06072 enoyl-CoA hydratase; 100.0 1E-49 2.3E-54 388.9 25.4 244 6-295 2-246 (248)
64 PRK07854 enoyl-CoA hydratase; 100.0 1.8E-49 3.9E-54 385.8 24.4 238 6-294 2-240 (243)
65 PRK07112 polyketide biosynthes 100.0 3.1E-49 6.7E-54 387.2 26.1 251 1-295 1-253 (255)
66 PRK07827 enoyl-CoA hydratase; 100.0 3.7E-49 8E-54 388.2 24.9 250 4-294 6-258 (260)
67 PF00378 ECH: Enoyl-CoA hydrat 100.0 9.6E-50 2.1E-54 389.9 19.9 244 7-289 1-245 (245)
68 PRK05617 3-hydroxyisobutyryl-C 100.0 2.7E-49 5.9E-54 401.5 23.8 290 4-296 3-325 (342)
69 PRK07110 polyketide biosynthes 100.0 1.3E-48 2.8E-53 381.4 25.9 245 1-287 2-247 (249)
70 PRK08321 naphthoate synthase; 100.0 1.6E-48 3.5E-53 390.3 26.3 253 5-295 24-296 (302)
71 PLN02874 3-hydroxyisobutyryl-C 100.0 1.7E-48 3.7E-53 400.2 22.9 289 4-296 11-338 (379)
72 PRK08184 benzoyl-CoA-dihydrodi 100.0 7.7E-48 1.7E-52 408.9 21.8 256 3-296 259-547 (550)
73 TIGR03222 benzo_boxC benzoyl-C 100.0 1E-47 2.3E-52 406.3 22.4 254 3-294 255-541 (546)
74 KOG1679 Enoyl-CoA hydratase [L 100.0 2E-48 4.2E-53 347.1 12.8 246 12-295 38-289 (291)
75 PRK07819 3-hydroxybutyryl-CoA 100.0 2.1E-46 4.6E-51 372.4 25.7 235 305-539 2-240 (286)
76 PLN02157 3-hydroxyisobutyryl-C 100.0 1.4E-46 3.1E-51 384.8 24.0 250 4-294 37-293 (401)
77 PRK07066 3-hydroxybutyryl-CoA 100.0 3.5E-46 7.6E-51 372.5 25.9 230 306-539 5-241 (321)
78 KOG2304 3-hydroxyacyl-CoA dehy 100.0 2.3E-47 4.9E-52 344.5 14.7 234 306-539 9-250 (298)
79 PRK05869 enoyl-CoA hydratase; 100.0 2.1E-46 4.6E-51 358.7 20.9 205 3-209 2-210 (222)
80 PRK08290 enoyl-CoA hydratase; 100.0 6.4E-46 1.4E-50 369.0 23.3 238 1-278 1-262 (288)
81 PLN02988 3-hydroxyisobutyryl-C 100.0 6E-45 1.3E-49 371.9 28.5 292 2-297 7-339 (381)
82 PRK08788 enoyl-CoA hydratase; 100.0 2.1E-44 4.5E-49 355.5 25.2 244 6-289 19-276 (287)
83 PRK06213 enoyl-CoA hydratase; 100.0 8.6E-45 1.9E-49 350.4 20.3 202 1-209 1-203 (229)
84 PRK08272 enoyl-CoA hydratase; 100.0 2.9E-44 6.3E-49 360.4 24.1 203 2-209 8-235 (302)
85 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1E-43 2.2E-48 376.8 25.3 233 307-539 4-238 (503)
86 PLN02851 3-hydroxyisobutyryl-C 100.0 3E-43 6.6E-48 359.8 27.5 286 4-296 42-371 (407)
87 PRK08268 3-hydroxy-acyl-CoA de 100.0 3.8E-43 8.3E-48 373.7 25.9 235 305-539 4-240 (507)
88 TIGR03200 dearomat_oah 6-oxocy 100.0 9.7E-43 2.1E-47 345.4 23.0 191 15-206 38-244 (360)
89 KOG1681 Enoyl-CoA isomerase [L 100.0 9.3E-44 2E-48 320.2 14.3 256 3-295 18-289 (292)
90 PRK08293 3-hydroxybutyryl-CoA 100.0 2.6E-42 5.6E-47 344.9 26.1 233 307-539 2-239 (287)
91 PRK05808 3-hydroxybutyryl-CoA 100.0 5.6E-42 1.2E-46 341.9 24.9 233 307-539 2-236 (282)
92 PRK06035 3-hydroxyacyl-CoA deh 100.0 7.5E-42 1.6E-46 342.4 25.8 233 307-539 2-239 (291)
93 PRK09260 3-hydroxybutyryl-CoA 100.0 9.7E-42 2.1E-46 341.1 25.4 232 308-539 1-235 (288)
94 PLN02267 enoyl-CoA hydratase/i 100.0 5.9E-42 1.3E-46 331.7 20.2 199 6-206 2-205 (239)
95 COG0447 MenB Dihydroxynaphthoi 100.0 2.5E-42 5.3E-47 308.7 14.0 252 3-294 17-275 (282)
96 PRK07530 3-hydroxybutyryl-CoA 100.0 5.9E-41 1.3E-45 336.3 25.6 233 307-539 3-237 (292)
97 PLN02545 3-hydroxybutyryl-CoA 100.0 8.5E-41 1.8E-45 335.6 25.7 233 307-539 3-237 (295)
98 KOG0016 Enoyl-CoA hydratase/is 100.0 4.2E-40 9.1E-45 304.7 23.3 253 1-290 4-263 (266)
99 PRK08269 3-hydroxybutyryl-CoA 100.0 2.1E-38 4.6E-43 318.1 25.0 221 319-539 1-236 (314)
100 TIGR03222 benzo_boxC benzoyl-C 100.0 1.1E-38 2.4E-43 337.7 21.2 201 3-206 10-232 (546)
101 PRK08184 benzoyl-CoA-dihydrodi 100.0 2E-38 4.3E-43 337.0 21.8 204 1-206 12-236 (550)
102 cd06558 crotonase-like Crotona 100.0 4.2E-38 9E-43 297.3 18.2 192 6-199 1-194 (195)
103 KOG1682 Enoyl-CoA isomerase [L 100.0 7.1E-38 1.5E-42 277.3 16.3 245 12-294 39-284 (287)
104 PRK06129 3-hydroxyacyl-CoA deh 100.0 5E-36 1.1E-40 302.5 25.9 231 308-538 2-239 (308)
105 PF02737 3HCDH_N: 3-hydroxyacy 100.0 1.6E-35 3.4E-40 274.1 20.0 180 310-489 1-180 (180)
106 PRK06130 3-hydroxybutyryl-CoA 100.0 1.3E-33 2.7E-38 286.0 25.5 228 307-539 3-237 (311)
107 KOG1684 Enoyl-CoA hydratase [L 100.0 5E-34 1.1E-38 274.6 20.0 290 4-296 38-367 (401)
108 PRK07531 bifunctional 3-hydrox 100.0 1.5E-33 3.3E-38 300.9 25.1 227 308-538 4-237 (495)
109 KOG2305 3-hydroxyacyl-CoA dehy 100.0 2.4E-34 5.2E-39 260.2 15.7 229 307-535 2-238 (313)
110 KOG1683 Hydroxyacyl-CoA dehydr 100.0 3.4E-29 7.4E-34 243.9 12.2 220 319-538 1-221 (380)
111 COG2084 MmsB 3-hydroxyisobutyr 99.9 1E-20 2.3E-25 184.1 16.0 186 309-524 1-209 (286)
112 PRK08268 3-hydroxy-acyl-CoA de 99.8 4.4E-20 9.6E-25 197.1 13.1 127 413-539 338-466 (507)
113 cd07014 S49_SppA Signal peptid 99.8 7.3E-20 1.6E-24 169.5 10.2 144 31-192 22-175 (177)
114 cd07020 Clp_protease_NfeD_1 No 99.8 1.1E-18 2.3E-23 162.9 12.9 149 16-191 2-171 (187)
115 TIGR01505 tartro_sem_red 2-hyd 99.8 4.8E-18 1E-22 170.4 14.7 186 310-526 1-209 (291)
116 PRK11559 garR tartronate semia 99.7 2.5E-17 5.5E-22 165.7 15.4 189 308-526 2-212 (296)
117 KOG0409 Predicted dehydrogenas 99.7 4.4E-17 9.4E-22 155.5 16.0 190 307-524 34-244 (327)
118 cd07019 S49_SppA_1 Signal pept 99.7 1E-16 2.2E-21 152.6 10.9 156 14-191 1-208 (211)
119 PRK15461 NADH-dependent gamma- 99.7 1E-15 2.2E-20 153.6 18.3 188 309-523 2-207 (296)
120 PLN02688 pyrroline-5-carboxyla 99.7 4.2E-15 9.1E-20 147.2 18.8 185 309-522 1-201 (266)
121 PRK07417 arogenate dehydrogena 99.7 1.9E-15 4.2E-20 150.4 15.7 154 310-488 2-167 (279)
122 PRK15059 tartronate semialdehy 99.6 3.6E-15 7.8E-20 149.0 16.9 189 310-526 2-209 (292)
123 TIGR01692 HIBADH 3-hydroxyisob 99.6 1.2E-15 2.7E-20 152.6 13.3 186 313-526 1-206 (288)
124 PF03446 NAD_binding_2: NAD bi 99.6 2.3E-16 5E-21 144.2 7.2 153 308-488 1-163 (163)
125 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.6 7.3E-16 1.6E-20 164.3 11.0 86 454-539 378-465 (503)
126 PLN02350 phosphogluconate dehy 99.6 5E-15 1.1E-19 156.1 15.5 193 308-522 6-224 (493)
127 PRK07679 pyrroline-5-carboxyla 99.6 4.4E-14 9.5E-19 140.8 17.0 188 308-522 3-206 (279)
128 PRK11880 pyrroline-5-carboxyla 99.6 8.4E-14 1.8E-18 138.0 18.9 187 308-522 2-202 (267)
129 PTZ00142 6-phosphogluconate de 99.6 3E-14 6.5E-19 150.2 16.1 190 309-523 2-219 (470)
130 PRK11199 tyrA bifunctional cho 99.6 6E-14 1.3E-18 145.0 17.8 171 307-518 97-277 (374)
131 TIGR00872 gnd_rel 6-phosphoglu 99.6 5.1E-14 1.1E-18 141.5 16.5 187 310-523 2-209 (298)
132 PRK12491 pyrroline-5-carboxyla 99.6 1.4E-13 2.9E-18 136.1 18.8 152 310-487 4-161 (272)
133 PRK11064 wecC UDP-N-acetyl-D-m 99.6 5.4E-14 1.2E-18 147.3 16.6 202 308-522 3-247 (415)
134 PRK12490 6-phosphogluconate de 99.6 1.8E-13 4E-18 137.6 18.6 185 310-523 2-210 (299)
135 PLN02858 fructose-bisphosphate 99.6 7.5E-14 1.6E-18 163.9 18.0 191 309-526 5-217 (1378)
136 PRK09599 6-phosphogluconate de 99.6 5.7E-14 1.2E-18 141.4 14.8 182 310-523 2-211 (301)
137 TIGR00705 SppA_67K signal pept 99.6 2.6E-14 5.7E-19 154.9 13.0 172 12-208 307-530 (584)
138 COG1004 Ugd Predicted UDP-gluc 99.5 1.6E-13 3.4E-18 136.8 16.5 198 309-522 1-241 (414)
139 cd07022 S49_Sppa_36K_type Sign 99.5 5E-14 1.1E-18 134.5 11.8 144 25-191 18-211 (214)
140 TIGR03026 NDP-sugDHase nucleot 99.5 1.1E-13 2.3E-18 145.6 15.1 201 310-522 2-243 (411)
141 PRK15057 UDP-glucose 6-dehydro 99.5 2.1E-13 4.5E-18 141.1 15.5 192 310-522 2-232 (388)
142 cd00394 Clp_protease_like Case 99.5 7.8E-14 1.7E-18 127.3 10.8 135 28-183 8-161 (161)
143 PLN02858 fructose-bisphosphate 99.5 2.5E-12 5.5E-17 151.2 25.6 191 307-526 323-537 (1378)
144 PRK08507 prephenate dehydrogen 99.5 6.5E-13 1.4E-17 132.1 17.0 152 310-488 2-168 (275)
145 PRK06545 prephenate dehydrogen 99.5 4.1E-13 8.8E-18 138.4 15.4 157 309-487 1-173 (359)
146 PRK12557 H(2)-dependent methyl 99.5 1E-12 2.3E-17 133.3 17.8 181 320-521 32-235 (342)
147 cd07023 S49_Sppa_N_C Signal pe 99.5 2E-13 4.4E-18 129.8 11.7 155 15-190 2-204 (208)
148 TIGR00873 gnd 6-phosphoglucona 99.5 3.2E-13 7E-18 142.5 14.0 190 310-523 1-216 (467)
149 COG0287 TyrA Prephenate dehydr 99.5 8.3E-13 1.8E-17 129.8 15.7 158 308-487 3-170 (279)
150 PRK15182 Vi polysaccharide bio 99.5 3.6E-13 7.9E-18 141.0 13.7 201 309-522 7-243 (425)
151 PRK08655 prephenate dehydrogen 99.5 1.6E-12 3.4E-17 137.0 18.5 154 309-487 1-162 (437)
152 cd07016 S14_ClpP_1 Caseinolyti 99.5 2.4E-13 5.2E-18 123.8 9.1 129 31-183 15-160 (160)
153 PRK07502 cyclohexadienyl dehyd 99.4 2.3E-12 4.9E-17 130.3 16.4 157 307-487 5-178 (307)
154 TIGR00706 SppA_dom signal pept 99.4 1.5E-12 3.2E-17 123.6 13.5 154 15-195 2-204 (207)
155 PLN02256 arogenate dehydrogena 99.4 3.1E-12 6.7E-17 128.1 15.5 152 309-487 37-203 (304)
156 PRK00094 gpsA NAD(P)H-dependen 99.4 4E-12 8.7E-17 129.7 16.7 199 308-522 1-239 (325)
157 PRK07680 late competence prote 99.4 1.6E-11 3.4E-16 122.0 17.3 152 310-488 2-159 (273)
158 COG0345 ProC Pyrroline-5-carbo 99.4 6.1E-12 1.3E-16 121.9 13.8 152 308-486 1-158 (266)
159 PLN02353 probable UDP-glucose 99.4 4.9E-12 1.1E-16 133.7 14.1 200 308-522 1-251 (473)
160 PRK05479 ketol-acid reductoiso 99.4 1.5E-11 3.2E-16 123.2 16.2 181 309-517 18-223 (330)
161 COG0677 WecC UDP-N-acetyl-D-ma 99.4 3.7E-11 7.9E-16 119.5 18.5 203 309-522 10-250 (436)
162 PRK06928 pyrroline-5-carboxyla 99.4 9E-12 1.9E-16 123.8 14.2 153 308-485 1-160 (277)
163 PRK06476 pyrroline-5-carboxyla 99.3 2.4E-11 5.2E-16 119.7 16.4 179 310-522 2-193 (258)
164 PRK07634 pyrroline-5-carboxyla 99.3 6E-11 1.3E-15 116.0 17.4 151 309-485 5-162 (245)
165 cd07018 S49_SppA_67K_type Sign 99.3 9.1E-12 2E-16 119.5 11.2 148 26-193 24-220 (222)
166 PRK08818 prephenate dehydrogen 99.3 2.7E-11 5.9E-16 123.6 14.2 137 309-487 5-154 (370)
167 PLN02712 arogenate dehydrogena 99.3 1.1E-10 2.3E-15 128.7 18.9 153 308-487 369-536 (667)
168 TIGR00465 ilvC ketol-acid redu 99.3 3E-11 6.5E-16 121.3 13.1 148 309-482 4-161 (314)
169 PRK14618 NAD(P)H-dependent gly 99.3 2.5E-11 5.3E-16 124.0 12.5 195 309-522 5-238 (328)
170 COG0240 GpsA Glycerol-3-phosph 99.3 1.1E-11 2.4E-16 122.2 8.6 165 309-491 2-181 (329)
171 PRK09287 6-phosphogluconate de 99.2 8.2E-11 1.8E-15 123.8 14.4 181 319-523 1-208 (459)
172 PRK14806 bifunctional cyclohex 99.2 1.7E-10 3.6E-15 130.6 17.1 156 308-487 3-176 (735)
173 PRK14619 NAD(P)H-dependent gly 99.2 6.7E-11 1.5E-15 119.6 12.4 167 309-520 5-213 (308)
174 TIGR01915 npdG NADPH-dependent 99.2 2.4E-10 5.2E-15 109.7 15.1 163 309-488 1-189 (219)
175 PRK08229 2-dehydropantoate 2-r 99.2 3E-10 6.5E-15 116.7 15.5 196 308-516 2-234 (341)
176 PTZ00431 pyrroline carboxylate 99.2 6.3E-10 1.4E-14 109.6 16.6 143 310-485 5-153 (260)
177 cd05297 GH4_alpha_glucosidase_ 99.2 4.9E-12 1.1E-16 132.8 -0.1 159 310-482 2-184 (423)
178 cd07021 Clp_protease_NfeD_like 99.2 3.1E-10 6.6E-15 104.5 11.5 145 16-190 2-176 (178)
179 COG2085 Predicted dinucleotide 99.1 1.3E-09 2.7E-14 100.8 14.5 154 308-488 1-180 (211)
180 PF01210 NAD_Gly3P_dh_N: NAD-d 99.1 2.6E-11 5.7E-16 110.0 3.4 105 310-426 1-106 (157)
181 PF03721 UDPG_MGDP_dh_N: UDP-g 99.1 1.5E-10 3.2E-15 107.7 8.2 112 309-429 1-125 (185)
182 PF02153 PDH: Prephenate dehyd 99.1 1.1E-09 2.4E-14 107.7 13.4 141 323-487 1-157 (258)
183 PLN02712 arogenate dehydrogena 99.1 3E-09 6.5E-14 117.4 17.8 153 308-487 52-219 (667)
184 TIGR01724 hmd_rel H2-forming N 99.1 1.6E-09 3.4E-14 106.1 13.2 147 320-487 32-193 (341)
185 PF00725 3HCDH: 3-hydroxyacyl- 99.1 4.8E-11 1E-15 99.1 2.2 48 491-538 1-50 (97)
186 PF03807 F420_oxidored: NADP o 99.1 3E-10 6.4E-15 94.0 6.4 89 310-424 1-95 (96)
187 PF10727 Rossmann-like: Rossma 99.1 8.6E-10 1.9E-14 95.3 9.2 114 309-446 11-127 (127)
188 COG1023 Gnd Predicted 6-phosph 99.0 6.8E-09 1.5E-13 96.3 15.4 182 309-522 1-209 (300)
189 PTZ00082 L-lactate dehydrogena 99.0 1.4E-09 3E-14 110.0 8.4 125 309-445 7-153 (321)
190 PRK12439 NAD(P)H-dependent gly 99.0 6.5E-09 1.4E-13 106.5 13.3 172 306-492 5-188 (341)
191 cd01339 LDH-like_MDH L-lactate 98.9 1.6E-09 3.4E-14 109.1 7.8 122 311-444 1-139 (300)
192 PRK06223 malate dehydrogenase; 98.9 2.8E-09 6.2E-14 107.8 9.2 125 308-444 2-143 (307)
193 COG0362 Gnd 6-phosphogluconate 98.9 2.7E-08 5.8E-13 98.9 15.3 193 309-525 4-222 (473)
194 PTZ00117 malate dehydrogenase; 98.9 3.1E-09 6.7E-14 107.6 9.1 125 309-445 6-147 (319)
195 TIGR03376 glycerol3P_DH glycer 98.9 5.8E-09 1.3E-13 106.0 8.5 165 310-491 1-197 (342)
196 PTZ00345 glycerol-3-phosphate 98.9 7E-09 1.5E-13 106.1 9.0 164 309-491 12-206 (365)
197 PRK12921 2-dehydropantoate 2-r 98.8 8.4E-08 1.8E-12 96.9 16.3 199 309-522 1-243 (305)
198 PRK14620 NAD(P)H-dependent gly 98.8 3.7E-08 7.9E-13 100.6 11.7 107 310-428 2-111 (326)
199 PRK06522 2-dehydropantoate 2-r 98.8 8.4E-08 1.8E-12 96.9 13.6 111 310-435 2-113 (304)
200 PRK06249 2-dehydropantoate 2-r 98.7 5.7E-07 1.2E-11 91.2 18.4 201 306-522 3-252 (313)
201 TIGR01763 MalateDH_bact malate 98.7 5.4E-08 1.2E-12 97.9 8.6 102 309-423 2-118 (305)
202 PRK10949 protease 4; Provision 98.7 2E-07 4.3E-12 101.6 13.2 163 12-196 325-539 (618)
203 cd07015 Clp_protease_NfeD Nodu 98.7 2.2E-07 4.7E-12 84.7 11.3 142 27-190 9-170 (172)
204 PRK06444 prephenate dehydrogen 98.7 4E-07 8.6E-12 85.1 13.3 113 310-487 2-120 (197)
205 cd07013 S14_ClpP Caseinolytic 98.7 8E-08 1.7E-12 87.4 8.3 132 28-183 9-162 (162)
206 PRK12480 D-lactate dehydrogena 98.6 8.3E-08 1.8E-12 97.5 9.1 99 310-436 148-249 (330)
207 TIGR00112 proC pyrroline-5-car 98.6 1.1E-06 2.3E-11 85.9 15.9 165 331-522 9-184 (245)
208 cd00650 LDH_MDH_like NAD-depen 98.5 2E-07 4.4E-12 92.0 8.3 98 311-422 1-118 (263)
209 COG4007 Predicted dehydrogenas 98.5 1.4E-06 3.1E-11 81.7 12.9 146 320-487 33-194 (340)
210 PRK00277 clpP ATP-dependent Cl 98.5 5.6E-07 1.2E-11 84.7 10.3 135 26-186 38-196 (200)
211 KOG1683 Hydroxyacyl-CoA dehydr 98.5 1.6E-07 3.6E-12 92.9 5.4 180 13-196 65-252 (380)
212 PF00056 Ldh_1_N: lactate/mala 98.4 1.1E-06 2.4E-11 78.0 9.7 102 309-424 1-119 (141)
213 PRK13403 ketol-acid reductoiso 98.4 4.4E-07 9.6E-12 89.9 7.5 143 309-482 17-173 (335)
214 KOG2666 UDP-glucose/GDP-mannos 98.4 2.9E-06 6.3E-11 81.9 11.4 198 308-522 1-251 (481)
215 PRK06436 glycerate dehydrogena 98.4 2.3E-06 5E-11 85.8 10.7 135 309-472 123-268 (303)
216 PF07991 IlvN: Acetohydroxy ac 98.4 1.2E-06 2.5E-11 77.9 7.2 93 309-428 5-99 (165)
217 TIGR02441 fa_ox_alpha_mit fatt 98.3 3.9E-07 8.4E-12 102.1 5.1 68 472-539 627-700 (737)
218 PRK13243 glyoxylate reductase; 98.3 1E-06 2.2E-11 89.9 7.0 102 309-436 151-255 (333)
219 cd07017 S14_ClpP_2 Caseinolyti 98.3 2.2E-06 4.7E-11 78.8 8.0 133 28-183 18-171 (171)
220 PRK08605 D-lactate dehydrogena 98.3 1.3E-06 2.9E-11 89.0 7.0 94 309-429 147-242 (332)
221 cd05291 HicDH_like L-2-hydroxy 98.3 2.4E-06 5.1E-11 86.3 8.4 98 309-420 1-114 (306)
222 PRK15469 ghrA bifunctional gly 98.3 1.4E-06 3E-11 87.8 6.6 102 309-436 137-241 (312)
223 PRK07574 formate dehydrogenase 98.3 2.2E-06 4.8E-11 88.4 8.1 104 309-436 193-299 (385)
224 PRK12553 ATP-dependent Clp pro 98.3 6E-06 1.3E-10 78.1 10.4 138 26-186 42-202 (207)
225 TIGR02354 thiF_fam2 thiamine b 98.3 2.5E-06 5.5E-11 80.3 7.7 104 309-420 22-142 (200)
226 PRK05708 2-dehydropantoate 2-r 98.2 6.9E-06 1.5E-10 82.9 11.2 115 309-436 3-118 (305)
227 PRK11778 putative inner membra 98.2 7.8E-06 1.7E-10 81.9 11.0 161 12-195 89-295 (330)
228 PLN03139 formate dehydrogenase 98.2 2.8E-06 6.2E-11 87.6 7.9 104 309-436 200-306 (386)
229 cd05293 LDH_1 A subgroup of L- 98.2 4.2E-06 9.1E-11 84.4 8.9 98 309-419 4-117 (312)
230 COG0616 SppA Periplasmic serin 98.2 8.4E-06 1.8E-10 82.3 10.6 164 14-197 60-273 (317)
231 cd01065 NAD_bind_Shikimate_DH 98.2 3.1E-06 6.8E-11 76.4 6.3 98 309-427 20-120 (155)
232 KOG2380 Prephenate dehydrogena 98.2 3E-05 6.5E-10 75.9 13.1 151 309-486 53-218 (480)
233 KOG2653 6-phosphogluconate deh 98.2 5.1E-05 1.1E-09 74.7 14.5 194 308-525 6-226 (487)
234 COG1893 ApbA Ketopantoate redu 98.2 2.3E-05 5E-10 78.8 12.6 165 309-488 1-176 (307)
235 PRK15076 alpha-galactosidase; 98.1 9.8E-06 2.1E-10 85.3 10.0 76 309-396 2-84 (431)
236 PF02558 ApbA: Ketopantoate re 98.1 9.9E-06 2.2E-10 72.8 8.7 110 311-436 1-115 (151)
237 PRK00066 ldh L-lactate dehydro 98.1 6.9E-06 1.5E-10 83.0 8.2 97 309-420 7-119 (315)
238 PLN02602 lactate dehydrogenase 98.1 7.8E-06 1.7E-10 83.4 8.6 98 309-419 38-151 (350)
239 PRK14512 ATP-dependent Clp pro 98.1 2E-05 4.4E-10 73.8 10.4 140 27-190 31-193 (197)
240 cd00300 LDH_like L-lactate deh 98.1 6.8E-06 1.5E-10 82.6 7.4 96 311-420 1-112 (300)
241 PF02826 2-Hacid_dh_C: D-isome 98.1 3E-06 6.5E-11 78.5 4.1 103 309-436 37-142 (178)
242 CHL00028 clpP ATP-dependent Cl 98.0 5.9E-05 1.3E-09 70.7 12.1 136 27-187 38-197 (200)
243 KOG2711 Glycerol-3-phosphate d 98.0 7.8E-06 1.7E-10 80.3 6.3 114 305-428 18-144 (372)
244 PF00574 CLP_protease: Clp pro 98.0 4.5E-06 9.8E-11 77.6 4.4 140 18-186 19-181 (182)
245 cd05292 LDH_2 A subgroup of L- 98.0 1.4E-05 3.1E-10 80.6 8.3 97 310-420 2-114 (308)
246 COG0111 SerA Phosphoglycerate 98.0 2.9E-05 6.3E-10 78.5 10.3 102 309-436 143-248 (324)
247 KOG3124 Pyrroline-5-carboxylat 98.0 3E-05 6.6E-10 73.5 9.4 151 309-483 1-156 (267)
248 PRK12319 acetyl-CoA carboxylas 98.0 0.00038 8.2E-09 67.7 16.8 138 26-187 77-215 (256)
249 PF01972 SDH_sah: Serine dehyd 98.0 0.00014 3E-09 69.9 13.3 99 23-145 67-165 (285)
250 TIGR00493 clpP ATP-dependent C 98.0 8.2E-05 1.8E-09 69.5 11.6 138 27-185 34-190 (191)
251 PRK14194 bifunctional 5,10-met 98.0 1.7E-05 3.7E-10 78.4 7.0 73 309-425 160-233 (301)
252 cd05290 LDH_3 A subgroup of L- 97.9 2.6E-05 5.7E-10 78.4 8.3 74 310-395 1-76 (307)
253 TIGR01327 PGDH D-3-phosphoglyc 97.9 1.4E-05 2.9E-10 86.6 6.6 103 309-436 139-244 (525)
254 cd05294 LDH-like_MDH_nadp A la 97.9 2.8E-05 6.2E-10 78.4 7.9 123 309-444 1-145 (309)
255 COG0039 Mdh Malate/lactate deh 97.9 3.1E-05 6.7E-10 77.0 7.7 104 309-425 1-120 (313)
256 TIGR02853 spore_dpaA dipicolin 97.9 3.4E-05 7.4E-10 76.9 8.0 89 309-424 152-241 (287)
257 PRK13581 D-3-phosphoglycerate 97.9 2E-05 4.3E-10 85.4 6.5 102 309-436 141-245 (526)
258 TIGR02440 FadJ fatty oxidation 97.8 1.1E-05 2.3E-10 90.4 3.9 52 488-539 606-663 (699)
259 PLN03230 acetyl-coenzyme A car 97.8 0.00064 1.4E-08 69.3 16.2 138 26-186 200-337 (431)
260 PRK11154 fadJ multifunctional 97.8 1.1E-05 2.3E-10 90.6 3.8 52 488-539 613-670 (708)
261 PRK05442 malate dehydrogenase; 97.8 3.3E-05 7.2E-10 78.2 7.0 107 308-427 4-134 (326)
262 TIGR00513 accA acetyl-CoA carb 97.8 0.0013 2.8E-08 65.6 17.6 138 26-186 130-267 (316)
263 CHL00198 accA acetyl-CoA carbo 97.8 0.0013 2.8E-08 65.5 17.6 138 26-186 133-270 (322)
264 PF01343 Peptidase_S49: Peptid 97.8 1.9E-05 4.1E-10 71.3 4.1 102 94-196 2-150 (154)
265 PLN00112 malate dehydrogenase 97.8 0.00015 3.2E-09 76.0 11.1 103 309-425 101-228 (444)
266 PRK05724 acetyl-CoA carboxylas 97.8 0.001 2.2E-08 66.4 16.3 138 26-186 130-267 (319)
267 PLN02928 oxidoreductase family 97.8 3.9E-05 8.6E-10 78.6 6.6 115 309-436 160-277 (347)
268 PRK14514 ATP-dependent Clp pro 97.8 0.00025 5.4E-09 67.2 11.4 134 27-186 62-219 (221)
269 PRK08410 2-hydroxyacid dehydro 97.8 0.00011 2.4E-09 74.2 9.6 109 309-447 146-258 (311)
270 PRK00257 erythronate-4-phospha 97.8 2.3E-05 5.1E-10 80.8 4.5 98 309-435 117-221 (381)
271 PRK05654 acetyl-CoA carboxylas 97.7 0.0015 3.2E-08 64.9 16.5 163 12-204 119-284 (292)
272 PF00670 AdoHcyase_NAD: S-aden 97.7 0.00011 2.3E-09 66.0 7.5 88 309-424 24-111 (162)
273 PRK12551 ATP-dependent Clp pro 97.7 0.0003 6.6E-09 65.7 10.7 137 27-187 33-191 (196)
274 cd01075 NAD_bind_Leu_Phe_Val_D 97.7 0.00033 7.2E-09 66.1 10.9 40 309-348 29-68 (200)
275 TIGR01757 Malate-DH_plant mala 97.7 0.00024 5.2E-09 73.2 10.4 103 309-425 45-172 (387)
276 PRK11790 D-3-phosphoglycerate 97.7 6.4E-05 1.4E-09 78.8 6.4 100 309-436 152-254 (409)
277 PRK06141 ornithine cyclodeamin 97.7 0.0001 2.2E-09 74.7 7.5 93 309-425 126-221 (314)
278 PRK08306 dipicolinate synthase 97.7 0.00016 3.5E-09 72.5 8.9 90 309-425 153-243 (296)
279 PLN03229 acetyl-coenzyme A car 97.7 0.0022 4.8E-08 69.7 17.8 138 26-186 221-358 (762)
280 PRK14513 ATP-dependent Clp pro 97.7 0.00043 9.3E-09 64.8 10.9 136 26-187 34-193 (201)
281 PRK13304 L-aspartate dehydroge 97.7 0.00018 4E-09 71.0 8.9 78 309-411 2-83 (265)
282 cd01338 MDH_choloroplast_like 97.7 6.8E-05 1.5E-09 75.9 5.9 104 309-425 3-130 (322)
283 TIGR01759 MalateDH-SF1 malate 97.6 0.00011 2.4E-09 74.3 7.3 105 309-426 4-132 (323)
284 TIGR01772 MDH_euk_gproteo mala 97.6 0.00012 2.6E-09 73.7 7.4 99 310-427 1-120 (312)
285 TIGR00745 apbA_panE 2-dehydrop 97.6 0.0022 4.7E-08 64.2 16.5 188 319-522 2-233 (293)
286 PRK05225 ketol-acid reductoiso 97.6 0.00022 4.8E-09 73.7 9.1 147 309-482 37-200 (487)
287 cd01337 MDH_glyoxysomal_mitoch 97.6 0.00017 3.6E-09 72.5 8.0 99 309-426 1-120 (310)
288 TIGR00515 accD acetyl-CoA carb 97.6 0.0023 5.1E-08 63.2 15.7 162 12-203 118-282 (285)
289 PLN00106 malate dehydrogenase 97.6 0.00012 2.7E-09 73.9 6.6 99 309-426 19-138 (323)
290 PRK15438 erythronate-4-phospha 97.6 6.1E-05 1.3E-09 77.5 4.3 98 309-435 117-221 (378)
291 PRK15409 bifunctional glyoxyla 97.6 0.00013 2.9E-09 73.9 6.6 102 309-436 146-251 (323)
292 PRK13302 putative L-aspartate 97.6 0.00022 4.8E-09 70.6 7.9 70 308-399 6-79 (271)
293 PF01488 Shikimate_DH: Shikima 97.5 0.00012 2.5E-09 64.6 5.0 74 309-400 13-88 (135)
294 COG1052 LdhA Lactate dehydroge 97.5 0.00019 4.2E-09 72.5 7.0 102 309-436 147-251 (324)
295 PRK14188 bifunctional 5,10-met 97.5 0.00018 3.8E-09 71.5 6.6 72 309-425 159-232 (296)
296 cd05213 NAD_bind_Glutamyl_tRNA 97.5 0.00026 5.7E-09 71.6 8.1 92 309-423 179-273 (311)
297 PRK06932 glycerate dehydrogena 97.5 0.00016 3.4E-09 73.2 6.1 98 309-436 148-248 (314)
298 TIGR00705 SppA_67K signal pept 97.5 0.0016 3.4E-08 71.4 14.2 104 12-133 41-160 (584)
299 TIGR02371 ala_DH_arch alanine 97.5 0.0003 6.5E-09 71.6 7.8 95 309-427 129-226 (325)
300 PRK06487 glycerate dehydrogena 97.5 0.00015 3.1E-09 73.6 5.4 97 309-436 149-248 (317)
301 cd00704 MDH Malate dehydrogena 97.5 0.00013 2.7E-09 74.0 4.9 101 310-424 2-127 (323)
302 COG0740 ClpP Protease subunit 97.5 0.0007 1.5E-08 62.6 9.1 98 88-188 76-194 (200)
303 PRK11730 fadB multifunctional 97.4 9.4E-05 2E-09 83.1 4.0 49 491-539 625-679 (715)
304 TIGR03134 malonate_gamma malon 97.4 0.0035 7.6E-08 60.3 14.2 160 21-202 39-205 (238)
305 PLN02306 hydroxypyruvate reduc 97.4 0.00025 5.3E-09 73.6 6.7 117 309-436 166-287 (386)
306 PF02056 Glyco_hydro_4: Family 97.4 0.0011 2.3E-08 61.0 10.1 74 310-395 1-81 (183)
307 PRK14179 bifunctional 5,10-met 97.4 0.00032 7E-09 69.0 7.1 72 309-425 159-232 (284)
308 cd00401 AdoHcyase S-adenosyl-L 97.4 0.00057 1.2E-08 71.2 9.2 87 309-423 203-289 (413)
309 PTZ00325 malate dehydrogenase; 97.4 0.0004 8.7E-09 70.1 7.7 35 306-340 6-43 (321)
310 TIGR03133 malonate_beta malona 97.4 0.013 2.8E-07 57.5 17.5 139 25-187 72-218 (274)
311 TIGR01771 L-LDH-NAD L-lactate 97.4 0.00026 5.6E-09 71.1 5.8 97 313-423 1-113 (299)
312 TIGR02437 FadB fatty oxidation 97.4 0.00013 2.8E-09 81.8 4.0 49 491-539 625-679 (714)
313 KOG1495 Lactate dehydrogenase 97.4 0.00082 1.8E-08 64.2 8.6 106 308-427 20-141 (332)
314 TIGR01758 MDH_euk_cyt malate d 97.4 0.00026 5.6E-09 71.8 5.7 103 310-426 1-128 (324)
315 COG0059 IlvC Ketol-acid reduct 97.3 0.0016 3.5E-08 63.4 10.4 145 309-481 19-175 (338)
316 TIGR00936 ahcY adenosylhomocys 97.3 0.00059 1.3E-08 70.8 8.0 87 309-424 196-283 (406)
317 PRK04148 hypothetical protein; 97.3 0.0026 5.7E-08 55.3 10.7 94 309-423 18-111 (134)
318 TIGR00507 aroE shikimate 5-deh 97.3 0.00037 8.1E-09 69.1 6.1 42 309-350 118-159 (270)
319 PRK05476 S-adenosyl-L-homocyst 97.3 0.00083 1.8E-08 70.2 8.8 86 309-424 213-300 (425)
320 cd01487 E1_ThiF_like E1_ThiF_l 97.3 0.00047 1E-08 63.5 6.3 98 310-412 1-112 (174)
321 PRK10949 protease 4; Provision 97.3 0.0022 4.8E-08 70.3 12.2 84 32-133 96-179 (618)
322 cd05298 GH4_GlvA_pagL_like Gly 97.3 0.0021 4.6E-08 67.7 11.5 75 309-395 1-82 (437)
323 CHL00174 accD acetyl-CoA carbo 97.3 0.021 4.6E-07 56.4 17.4 141 25-199 146-292 (296)
324 COG1030 NfeD Membrane-bound se 97.2 0.0042 9.1E-08 63.9 12.6 147 12-185 25-187 (436)
325 cd05197 GH4_glycoside_hydrolas 97.2 0.0025 5.5E-08 67.0 11.2 102 309-423 1-143 (425)
326 COG2910 Putative NADH-flavin r 97.2 0.0012 2.5E-08 59.8 6.9 70 309-396 1-71 (211)
327 PRK07340 ornithine cyclodeamin 97.2 0.0012 2.6E-08 66.5 8.0 93 309-427 126-221 (304)
328 COG0569 TrkA K+ transport syst 97.2 0.0026 5.6E-08 61.2 9.8 95 309-420 1-98 (225)
329 PRK12549 shikimate 5-dehydroge 97.2 0.00073 1.6E-08 67.4 6.2 73 309-397 128-202 (284)
330 KOG0069 Glyoxylate/hydroxypyru 97.2 0.0013 2.8E-08 66.0 7.9 96 308-428 162-258 (336)
331 PTZ00075 Adenosylhomocysteinas 97.1 0.00098 2.1E-08 70.1 7.3 87 309-425 255-343 (476)
332 cd05296 GH4_P_beta_glucosidase 97.1 0.002 4.3E-08 67.7 9.6 75 309-395 1-83 (419)
333 PRK08618 ornithine cyclodeamin 97.1 0.0015 3.3E-08 66.5 8.0 93 309-425 128-223 (325)
334 TIGR02992 ectoine_eutC ectoine 97.1 0.0015 3.2E-08 66.6 7.7 95 309-426 130-227 (326)
335 COG1748 LYS9 Saccharopine dehy 97.1 0.0011 2.3E-08 68.2 6.6 79 308-400 1-81 (389)
336 cd01336 MDH_cytoplasmic_cytoso 97.1 0.00068 1.5E-08 68.9 5.0 101 310-424 4-129 (325)
337 TIGR01035 hemA glutamyl-tRNA r 97.0 0.0012 2.6E-08 69.7 6.9 94 309-423 181-277 (417)
338 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0022 4.8E-08 58.5 7.7 76 309-428 45-121 (168)
339 PLN02494 adenosylhomocysteinas 97.0 0.0015 3.1E-08 68.6 7.2 87 309-424 255-342 (477)
340 PRK12552 ATP-dependent Clp pro 97.0 0.01 2.2E-07 56.3 12.1 143 27-186 48-214 (222)
341 PRK00258 aroE shikimate 5-dehy 97.0 0.0011 2.5E-08 65.9 6.1 72 309-399 124-197 (278)
342 PRK06407 ornithine cyclodeamin 97.0 0.0021 4.5E-08 64.6 7.7 94 309-425 118-214 (301)
343 cd01078 NAD_bind_H4MPT_DH NADP 97.0 0.0012 2.6E-08 61.9 5.6 42 309-350 29-71 (194)
344 smart00859 Semialdhyde_dh Semi 97.0 0.0025 5.5E-08 54.9 7.1 101 310-429 1-105 (122)
345 PRK00045 hemA glutamyl-tRNA re 96.9 0.002 4.3E-08 68.2 7.5 94 309-423 183-280 (423)
346 PRK07189 malonate decarboxylas 96.9 0.033 7.2E-07 55.3 15.3 96 25-133 81-182 (301)
347 PRK08644 thiamine biosynthesis 96.9 0.0019 4.1E-08 61.5 6.4 32 309-340 29-61 (212)
348 COG2423 Predicted ornithine cy 96.9 0.004 8.7E-08 62.8 8.5 95 308-425 130-227 (330)
349 PRK08291 ectoine utilization p 96.9 0.0032 6.9E-08 64.3 7.9 93 309-424 133-228 (330)
350 PF01408 GFO_IDH_MocA: Oxidore 96.8 0.0085 1.8E-07 51.2 9.3 76 310-410 2-83 (120)
351 COG1712 Predicted dinucleotide 96.8 0.0062 1.4E-07 56.9 8.7 87 310-422 2-92 (255)
352 TIGR01117 mmdA methylmalonyl-C 96.8 0.035 7.6E-07 59.9 15.8 170 13-202 314-497 (512)
353 TIGR01921 DAP-DH diaminopimela 96.8 0.013 2.8E-07 59.0 11.5 66 309-400 4-73 (324)
354 PLN00203 glutamyl-tRNA reducta 96.8 0.0015 3.3E-08 70.2 5.3 84 309-410 267-353 (519)
355 PRK06046 alanine dehydrogenase 96.8 0.0038 8.3E-08 63.6 7.8 95 309-427 130-227 (326)
356 COG4091 Predicted homoserine d 96.8 0.019 4E-07 57.1 12.0 160 310-487 19-184 (438)
357 PRK09310 aroDE bifunctional 3- 96.8 0.0026 5.7E-08 68.2 6.8 71 309-400 333-403 (477)
358 PRK06823 ornithine cyclodeamin 96.8 0.0044 9.4E-08 62.7 8.1 95 309-427 129-226 (315)
359 PRK05086 malate dehydrogenase; 96.8 0.0043 9.2E-08 62.8 7.9 98 309-424 1-119 (312)
360 PRK06718 precorrin-2 dehydroge 96.7 0.012 2.6E-07 55.5 10.4 129 309-478 11-142 (202)
361 PF13460 NAD_binding_10: NADH( 96.7 0.0022 4.8E-08 59.2 5.3 36 311-346 1-37 (183)
362 TIGR00518 alaDH alanine dehydr 96.7 0.0024 5.1E-08 66.2 5.8 97 309-423 168-267 (370)
363 PF01113 DapB_N: Dihydrodipico 96.7 0.0079 1.7E-07 52.1 8.1 102 309-431 1-106 (124)
364 PF02423 OCD_Mu_crystall: Orni 96.7 0.0032 6.9E-08 63.7 6.3 93 309-425 129-226 (313)
365 PF01039 Carboxyl_trans: Carbo 96.7 0.052 1.1E-06 58.6 15.8 146 16-197 59-217 (493)
366 PRK11861 bifunctional prephena 96.6 0.0083 1.8E-07 67.3 9.6 95 391-487 1-110 (673)
367 PRK13301 putative L-aspartate 96.6 0.0083 1.8E-07 58.3 8.1 74 309-409 3-82 (267)
368 PRK14175 bifunctional 5,10-met 96.6 0.0055 1.2E-07 60.5 7.0 73 309-425 159-232 (286)
369 PF01118 Semialdhyde_dh: Semia 96.6 0.0024 5.3E-08 55.0 4.0 99 310-429 1-103 (121)
370 PRK00048 dihydrodipicolinate r 96.5 0.0055 1.2E-07 60.2 6.7 94 309-431 2-99 (257)
371 TIGR01809 Shik-DH-AROM shikima 96.5 0.007 1.5E-07 60.3 7.3 42 309-350 126-168 (282)
372 COG0373 HemA Glutamyl-tRNA red 96.5 0.004 8.8E-08 64.4 5.5 68 309-397 179-248 (414)
373 COG1486 CelF Alpha-galactosida 96.5 0.024 5.2E-07 58.9 11.0 75 309-395 4-85 (442)
374 PRK13940 glutamyl-tRNA reducta 96.4 0.0044 9.6E-08 65.0 5.7 71 309-399 182-254 (414)
375 PRK07589 ornithine cyclodeamin 96.4 0.012 2.6E-07 60.2 8.6 94 309-426 130-228 (346)
376 PF02254 TrkA_N: TrkA-N domain 96.4 0.017 3.7E-07 49.0 8.4 95 311-421 1-95 (116)
377 PRK06199 ornithine cyclodeamin 96.4 0.01 2.2E-07 61.6 7.9 99 308-423 155-259 (379)
378 PF03059 NAS: Nicotianamine sy 96.3 0.014 3E-07 57.4 8.0 100 308-422 121-229 (276)
379 TIGR01470 cysG_Nterm siroheme 96.2 0.027 5.8E-07 53.3 9.3 131 309-479 10-143 (205)
380 TIGR02356 adenyl_thiF thiazole 96.1 0.01 2.2E-07 56.1 5.9 33 309-341 22-55 (202)
381 PRK10669 putative cation:proto 96.1 0.02 4.4E-07 62.9 9.0 96 309-420 418-513 (558)
382 PF03435 Saccharop_dh: Sacchar 96.1 0.0057 1.2E-07 64.0 4.5 72 311-397 1-77 (386)
383 PLN02819 lysine-ketoglutarate 96.1 0.019 4.1E-07 66.4 8.8 121 260-399 516-660 (1042)
384 PRK03659 glutathione-regulated 96.0 0.029 6.2E-07 62.2 9.7 97 309-421 401-497 (601)
385 PRK14189 bifunctional 5,10-met 96.0 0.013 2.8E-07 57.9 6.1 72 309-425 159-232 (285)
386 PRK09424 pntA NAD(P) transhydr 96.0 0.037 8E-07 59.4 10.0 41 309-349 166-206 (509)
387 PRK09496 trkA potassium transp 95.9 0.044 9.6E-07 58.5 10.3 40 309-348 1-40 (453)
388 COG0686 Ald Alanine dehydrogen 95.9 0.021 4.5E-07 56.1 6.9 95 309-421 169-266 (371)
389 PRK13303 L-aspartate dehydroge 95.9 0.016 3.4E-07 57.3 6.2 68 309-398 2-72 (265)
390 cd05191 NAD_bind_amino_acid_DH 95.9 0.036 7.8E-07 44.5 7.2 31 309-339 24-55 (86)
391 PRK12475 thiamine/molybdopteri 95.9 0.025 5.4E-07 57.8 7.7 33 309-341 25-58 (338)
392 PRK09496 trkA potassium transp 95.9 0.055 1.2E-06 57.8 10.8 42 308-349 231-272 (453)
393 TIGR00561 pntA NAD(P) transhyd 95.8 0.05 1.1E-06 58.3 9.8 40 309-348 165-204 (511)
394 COG0169 AroE Shikimate 5-dehyd 95.8 0.031 6.7E-07 55.3 7.7 43 309-351 127-170 (283)
395 PRK14192 bifunctional 5,10-met 95.7 0.036 7.7E-07 55.1 7.8 71 309-423 160-231 (283)
396 PLN02820 3-methylcrotonyl-CoA 95.7 0.32 7E-06 53.0 15.6 151 16-200 131-294 (569)
397 PRK06719 precorrin-2 dehydroge 95.6 0.016 3.4E-07 52.4 4.5 32 309-340 14-45 (157)
398 TIGR01117 mmdA methylmalonyl-C 95.6 0.42 9.2E-06 51.6 16.0 148 18-201 86-244 (512)
399 cd01484 E1-2_like Ubiquitin ac 95.5 0.064 1.4E-06 51.7 8.7 160 310-477 1-177 (234)
400 PRK07688 thiamine/molybdopteri 95.4 0.034 7.3E-07 56.9 6.7 33 309-341 25-58 (339)
401 PRK00961 H(2)-dependent methyl 95.4 0.093 2E-06 50.6 9.0 109 375-486 128-241 (342)
402 PRK00683 murD UDP-N-acetylmura 95.4 0.021 4.7E-07 60.3 5.4 37 308-344 3-39 (418)
403 COG0300 DltE Short-chain dehyd 95.4 0.057 1.2E-06 52.8 7.9 47 307-353 5-52 (265)
404 TIGR01723 hmd_TIGR 5,10-methen 95.4 0.12 2.6E-06 50.0 9.6 109 375-486 126-239 (340)
405 PRK12409 D-amino acid dehydrog 95.4 0.013 2.9E-07 61.6 3.7 34 308-341 1-34 (410)
406 PF00070 Pyr_redox: Pyridine n 95.3 0.026 5.6E-07 44.5 4.4 35 310-344 1-35 (80)
407 PRK14027 quinate/shikimate deh 95.3 0.032 7E-07 55.5 6.0 42 309-350 128-170 (283)
408 PRK12548 shikimate 5-dehydroge 95.3 0.022 4.8E-07 57.0 4.8 39 309-347 127-169 (289)
409 cd05311 NAD_bind_2_malic_enz N 95.3 0.14 3.1E-06 49.1 10.2 32 309-340 26-60 (226)
410 KOG0068 D-3-phosphoglycerate d 95.3 0.048 1E-06 54.1 6.8 91 309-425 147-238 (406)
411 COG0825 AccA Acetyl-CoA carbox 95.3 0.17 3.7E-06 49.2 10.3 84 93-186 183-266 (317)
412 PF13766 ECH_C: 2-enoyl-CoA Hy 95.2 0.037 8E-07 47.4 5.2 55 243-297 47-103 (118)
413 PRK06153 hypothetical protein; 95.2 0.035 7.5E-07 56.9 5.8 31 310-340 178-209 (393)
414 PRK00436 argC N-acetyl-gamma-g 95.2 0.065 1.4E-06 55.0 7.9 100 308-429 2-105 (343)
415 TIGR00036 dapB dihydrodipicoli 95.2 0.061 1.3E-06 53.1 7.4 101 309-431 2-107 (266)
416 PRK04207 glyceraldehyde-3-phos 95.1 0.072 1.6E-06 54.6 8.0 105 309-424 2-110 (341)
417 PF13380 CoA_binding_2: CoA bi 95.1 0.059 1.3E-06 46.0 6.2 80 309-420 1-85 (116)
418 cd05212 NAD_bind_m-THF_DH_Cycl 95.1 0.085 1.8E-06 46.6 7.3 73 309-425 29-102 (140)
419 PF02882 THF_DHG_CYH_C: Tetrah 95.1 0.063 1.4E-06 48.5 6.6 74 309-426 37-111 (160)
420 PRK03562 glutathione-regulated 95.1 0.1 2.3E-06 57.9 9.7 94 309-420 401-496 (621)
421 PRK12829 short chain dehydroge 95.0 0.14 3E-06 50.1 9.6 41 309-349 12-53 (264)
422 PRK02318 mannitol-1-phosphate 95.0 0.031 6.7E-07 58.3 5.2 41 309-349 1-42 (381)
423 COG1063 Tdh Threonine dehydrog 94.9 0.12 2.5E-06 53.3 9.0 40 310-349 171-211 (350)
424 PRK10792 bifunctional 5,10-met 94.9 0.064 1.4E-06 53.0 6.7 71 309-423 160-231 (285)
425 COG1064 AdhP Zn-dependent alco 94.9 1 2.2E-05 45.7 15.1 41 309-349 168-208 (339)
426 PRK05562 precorrin-2 dehydroge 94.8 0.15 3.3E-06 48.6 8.8 78 309-407 26-104 (223)
427 PF13241 NAD_binding_7: Putati 94.8 0.067 1.5E-06 44.5 5.7 33 309-341 8-40 (103)
428 PRK14191 bifunctional 5,10-met 94.8 0.086 1.9E-06 52.1 7.2 72 309-424 158-230 (285)
429 PRK12828 short chain dehydroge 94.8 0.07 1.5E-06 51.1 6.5 39 309-347 8-47 (239)
430 COG0777 AccD Acetyl-CoA carbox 94.7 0.48 1E-05 45.8 11.6 161 15-205 124-286 (294)
431 cd01079 NAD_bind_m-THF_DH NAD 94.7 0.19 4E-06 46.6 8.6 88 309-426 63-159 (197)
432 PLN03209 translocon at the inn 94.6 0.16 3.4E-06 55.2 9.3 42 309-350 81-123 (576)
433 PRK07326 short chain dehydroge 94.6 0.088 1.9E-06 50.5 6.8 42 309-350 7-49 (237)
434 PRK14106 murD UDP-N-acetylmura 94.5 0.043 9.4E-07 58.6 4.9 33 309-341 6-38 (450)
435 COG1648 CysG Siroheme synthase 94.5 0.62 1.3E-05 44.1 12.1 131 309-479 13-146 (210)
436 PRK12550 shikimate 5-dehydroge 94.5 0.11 2.3E-06 51.5 7.1 41 309-349 123-164 (272)
437 PLN02968 Probable N-acetyl-gam 94.4 0.088 1.9E-06 54.7 6.7 100 307-429 37-140 (381)
438 PRK14178 bifunctional 5,10-met 94.4 0.15 3.3E-06 50.2 7.8 73 309-425 153-226 (279)
439 COG0673 MviM Predicted dehydro 94.4 0.13 2.8E-06 52.6 7.9 72 308-401 3-81 (342)
440 cd01490 Ube1_repeat2 Ubiquitin 94.4 0.17 3.7E-06 53.1 8.6 33 310-342 1-39 (435)
441 PRK01438 murD UDP-N-acetylmura 94.3 0.15 3.2E-06 55.0 8.5 46 296-342 5-50 (480)
442 PF12847 Methyltransf_18: Meth 94.3 0.1 2.2E-06 43.7 5.7 95 309-421 3-109 (112)
443 PRK12749 quinate/shikimate deh 94.3 0.098 2.1E-06 52.2 6.5 40 309-348 125-168 (288)
444 cd00755 YgdL_like Family of ac 94.3 0.18 3.9E-06 48.6 8.0 34 309-342 12-46 (231)
445 cd00757 ThiF_MoeB_HesA_family 94.2 0.17 3.7E-06 48.7 7.7 33 309-341 22-55 (228)
446 PRK08762 molybdopterin biosynt 94.1 0.22 4.8E-06 51.8 9.0 31 310-340 137-168 (376)
447 PRK00141 murD UDP-N-acetylmura 94.1 0.092 2E-06 56.5 6.3 37 307-343 14-50 (473)
448 cd05211 NAD_bind_Glu_Leu_Phe_V 94.1 0.13 2.8E-06 49.1 6.6 33 309-341 24-57 (217)
449 TIGR01850 argC N-acetyl-gamma- 94.1 0.11 2.5E-06 53.3 6.6 99 310-429 2-105 (346)
450 PLN03075 nicotianamine synthas 94.1 0.25 5.4E-06 49.2 8.7 101 308-423 124-233 (296)
451 PRK14176 bifunctional 5,10-met 94.1 0.16 3.4E-06 50.2 7.2 73 309-425 165-238 (287)
452 PF01039 Carboxyl_trans: Carbo 94.0 0.36 7.9E-06 52.1 10.6 173 12-204 292-482 (493)
453 PRK05868 hypothetical protein; 94.0 0.041 8.8E-07 57.3 3.3 36 308-343 1-36 (372)
454 PRK05597 molybdopterin biosynt 94.0 0.042 9.2E-07 56.6 3.3 33 309-341 29-62 (355)
455 CHL00194 ycf39 Ycf39; Provisio 94.0 0.078 1.7E-06 53.8 5.1 35 310-344 2-37 (317)
456 COG0190 FolD 5,10-methylene-te 93.9 0.11 2.3E-06 50.9 5.7 73 309-425 157-230 (283)
457 TIGR03736 PRTRC_ThiF PRTRC sys 93.9 0.14 3.1E-06 49.6 6.5 98 309-411 12-129 (244)
458 PF13450 NAD_binding_8: NAD(P) 93.9 0.051 1.1E-06 41.5 2.8 29 313-341 1-29 (68)
459 cd01486 Apg7 Apg7 is an E1-lik 93.9 0.027 5.9E-07 55.8 1.5 32 310-341 1-33 (307)
460 PRK00711 D-amino acid dehydrog 93.9 0.052 1.1E-06 57.2 3.8 33 310-342 2-34 (416)
461 PRK14177 bifunctional 5,10-met 93.8 0.12 2.6E-06 51.1 5.8 73 309-425 160-233 (284)
462 PRK08300 acetaldehyde dehydrog 93.8 0.31 6.7E-06 48.7 8.8 96 309-425 5-103 (302)
463 TIGR03840 TMPT_Se_Te thiopurin 93.8 0.7 1.5E-05 44.0 10.9 101 310-418 37-147 (213)
464 PRK05600 thiamine biosynthesis 93.8 0.16 3.5E-06 52.6 7.1 32 310-341 43-75 (370)
465 PRK06270 homoserine dehydrogen 93.8 0.17 3.6E-06 52.0 7.1 22 309-330 3-24 (341)
466 PRK05690 molybdopterin biosynt 93.7 0.15 3.2E-06 49.8 6.3 34 309-342 33-67 (245)
467 PRK14982 acyl-ACP reductase; P 93.7 0.11 2.3E-06 53.0 5.5 41 309-349 156-199 (340)
468 PRK07774 short chain dehydroge 93.7 0.15 3.3E-06 49.3 6.5 41 309-349 7-48 (250)
469 PRK15116 sulfur acceptor prote 93.7 0.18 3.8E-06 49.7 6.8 33 310-342 32-65 (268)
470 PRK08223 hypothetical protein; 93.7 0.23 4.9E-06 49.2 7.6 36 310-345 29-65 (287)
471 cd01076 NAD_bind_1_Glu_DH NAD( 93.7 0.19 4.2E-06 48.3 6.9 31 309-339 32-63 (227)
472 COG0136 Asd Aspartate-semialde 93.6 0.22 4.7E-06 50.1 7.4 147 309-486 2-156 (334)
473 PRK13255 thiopurine S-methyltr 93.6 0.67 1.5E-05 44.3 10.6 101 309-417 39-149 (218)
474 PRK08267 short chain dehydroge 93.6 0.12 2.6E-06 50.5 5.7 42 308-349 1-43 (260)
475 PRK07825 short chain dehydroge 93.6 0.2 4.3E-06 49.4 7.2 41 309-349 6-47 (273)
476 PRK07890 short chain dehydroge 93.5 0.16 3.5E-06 49.4 6.4 43 309-351 6-49 (258)
477 KOG1502 Flavonol reductase/cin 93.5 0.19 4.1E-06 50.5 6.7 39 307-345 5-44 (327)
478 PLN00016 RNA-binding protein; 93.5 0.18 3.9E-06 52.5 7.0 36 308-343 52-92 (378)
479 PRK14190 bifunctional 5,10-met 93.4 0.3 6.4E-06 48.4 7.9 73 309-425 159-232 (284)
480 PRK07831 short chain dehydroge 93.4 0.19 4.1E-06 49.2 6.7 43 309-351 18-62 (262)
481 PF01266 DAO: FAD dependent ox 93.4 0.071 1.5E-06 54.4 3.8 31 310-340 1-31 (358)
482 PRK10538 malonic semialdehyde 93.4 0.17 3.7E-06 49.1 6.3 39 310-348 2-41 (248)
483 PRK00536 speE spermidine synth 93.4 0.81 1.7E-05 44.9 10.8 99 308-425 73-173 (262)
484 cd01489 Uba2_SUMO Ubiquitin ac 93.4 0.22 4.9E-06 50.1 7.1 34 310-343 1-35 (312)
485 PRK03369 murD UDP-N-acetylmura 93.4 0.15 3.3E-06 55.0 6.4 35 309-343 13-47 (488)
486 PF10100 DUF2338: Uncharacteri 93.4 1.3 2.7E-05 45.6 12.3 176 308-487 1-200 (429)
487 PRK06196 oxidoreductase; Provi 93.3 0.24 5.1E-06 50.1 7.4 42 309-350 27-69 (315)
488 PRK07236 hypothetical protein; 93.3 0.074 1.6E-06 55.5 3.8 35 308-342 6-40 (386)
489 COG0499 SAM1 S-adenosylhomocys 93.3 0.28 6E-06 49.3 7.4 87 309-424 210-296 (420)
490 PF01494 FAD_binding_3: FAD bi 93.3 0.062 1.3E-06 54.7 3.1 34 310-343 3-36 (356)
491 PRK14874 aspartate-semialdehyd 93.3 0.15 3.3E-06 52.1 5.9 143 309-486 2-152 (334)
492 PRK08340 glucose-1-dehydrogena 93.2 0.22 4.8E-06 48.7 6.8 42 310-351 2-44 (259)
493 PRK14183 bifunctional 5,10-met 93.2 0.26 5.5E-06 48.6 7.0 72 309-424 158-230 (281)
494 PRK06057 short chain dehydroge 93.2 0.19 4.1E-06 49.0 6.2 41 309-349 8-49 (255)
495 PRK05653 fabG 3-ketoacyl-(acyl 93.2 1 2.3E-05 43.0 11.4 40 309-348 6-46 (246)
496 KOG1494 NAD-dependent malate d 93.2 2.1 4.6E-05 41.7 12.8 179 307-501 27-260 (345)
497 PRK07074 short chain dehydroge 93.2 0.16 3.4E-06 49.5 5.6 41 309-349 3-44 (257)
498 PRK01710 murD UDP-N-acetylmura 93.2 0.36 7.8E-06 51.7 8.8 34 309-342 15-48 (458)
499 TIGR02355 moeB molybdopterin s 93.1 0.18 3.9E-06 48.9 5.9 36 309-344 25-61 (240)
500 PRK08163 salicylate hydroxylas 93.1 0.075 1.6E-06 55.6 3.4 34 309-342 5-38 (396)
No 1
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5.8e-99 Score=832.23 Aligned_cols=534 Identities=32% Similarity=0.531 Sum_probs=474.6
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC
Q 009256 1 MAAP--RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~--~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (539)
|++. ++.++..+++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||+|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (715)
T PRK11730 1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP 80 (715)
T ss_pred CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence 6654 57777436899999999995 69999999999999999999999999999999999999999999886421111
Q ss_pred --cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
....+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG 159 (715)
T PRK11730 81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG 159 (715)
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence 1112223344556 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCCh----HHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR 231 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 231 (539)
..+|++|++||++++|+||+++||||+|||++++.+++.+++++++..+..+.... ....++. ......++..+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k 237 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAK 237 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998753222111 0011111 11111222232
Q ss_pred HH-HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcce
Q 009256 232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (539)
Q Consensus 232 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~k 310 (539)
+. .++...+||++..++++++.+...+++++++.|.+.|..++.|+|++|++++|+++|..++.+.. ....++.+++
T Consensus 238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~ 315 (715)
T PRK11730 238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQ 315 (715)
T ss_pred HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccce
Confidence 22 35678899999999999999999999999999999999999999999999999999999876522 1124567999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCE
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (539)
|+|||+|.||.+||..++.+|++|++||++++.++++.+++.+.+.+.+++|.+++.+.+..+++++++++++++++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV 395 (715)
T ss_pred EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHH
Q 009256 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (539)
Q Consensus 391 Vi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~ 470 (539)
|||++||++++|+++|+++++++++++||+||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~ 475 (715)
T PRK11730 396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA 475 (715)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 471 ~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
.+..|++.+||.||+++|.|||++||+++++++|++.++++|++++|||+++ .++|+|+|||+++|..+
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~G 545 (715)
T PRK11730 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVG 545 (715)
T ss_pred HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999 67999999999999864
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1e-98 Score=827.85 Aligned_cols=534 Identities=31% Similarity=0.512 Sum_probs=475.5
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC
Q 009256 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~--~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (539)
|++. ++.++..+++|++|||||| +.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 80 (714)
T TIGR02437 1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP 80 (714)
T ss_pred CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence 5555 5777754689999999999 579999999999999999999999999999999999999999999986421111
Q ss_pred --cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
....+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG 159 (714)
T TIGR02437 81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG 159 (714)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence 1112223345666 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCCh--HHHHH--HHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL--SEARE--VLKLAR 231 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~ 231 (539)
..+|++|++||++++|+||+++||||+++|++++.+++.++++++....+.+.+.. ......+ ....+ .....+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAK 237 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998766432221111 0011110 00111 123333
Q ss_pred H-HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcce
Q 009256 232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (539)
Q Consensus 232 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~k 310 (539)
. ..+++..+|||+..+.++++++...+++++++.|.+.|.+++.|++++++++.|+.+|..++.+. ..+..++++++
T Consensus 238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~--~~~~~~~~i~~ 315 (714)
T TIGR02437 238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAK--KADKIAKDVKQ 315 (714)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCC--CCCCCccccce
Confidence 3 45578889999999999999999999999999999999999999999999999999999887642 11235678999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCE
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (539)
|+|||+|.||.+||..++.+|++|+++|++++.++++.+++++.+...+++|.+++.+.+..+++++++++++++++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (714)
T TIGR02437 316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI 395 (714)
T ss_pred EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHH
Q 009256 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (539)
Q Consensus 391 Vi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~ 470 (539)
|||++||++++|+++|+++++++++++|++||||++++++++..+.+|+|++|+|||+|++.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~ 475 (714)
T TIGR02437 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA 475 (714)
T ss_pred EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 471 ~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++..+++.+||.||+++|.|||++||++.++++|++.++++|+++++||+++ .++|||||||+++|..+
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~G 545 (714)
T TIGR02437 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVG 545 (714)
T ss_pred HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999 67999999999999764
No 3
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.7e-98 Score=827.60 Aligned_cols=533 Identities=35% Similarity=0.550 Sum_probs=473.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEecCCCCcccCCCchhhhhhcCCC
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~v-vl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (539)
|+++++.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|++ |+||.|++||+|+|++++.......
T Consensus 10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~ 88 (737)
T TIGR02441 10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ 88 (737)
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence 6677899998 7999999999996 5999999999999999999999999975 5699999999999999986421111
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCcccCCCCCCcchhhccccccC
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
....+....++++ .+|.++||||||+|||+|+|||++|+|+||+|||+++ ++|++||+++|++|++|++++|||++|
T Consensus 89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 1222333345666 6799999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-------------chHHHHHHHHHHHHHhcCchhhhhhhcccccCCh--
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL-- 220 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~-- 220 (539)
..+|++|+++|++++|+||+++||||+|||+ +++.+.+.+++++++..+....+......+....
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM 247 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence 9999999999999999999999999999987 5578888888888766442221111000000000
Q ss_pred ---HHHHHHHHHHHHH-HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 221 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 221 ---~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
......+..++.+ .+++..+|||+.+++++++.+...+++++++.|++.|.+++.|++++..++.|+..|..++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~ 327 (737)
T TIGR02441 248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK 327 (737)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence 1122234444444 456777899999999999999999999999999999999999999999999999999888765
Q ss_pred CCCcCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 009256 297 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (539)
Q Consensus 297 ~~~~~~~~~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 376 (539)
+ +..++++++|+|||+|.||++||..++.+|++|+++|++++.+++..+++.+.+++.+++|.+++.+.+..++++
T Consensus 328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 403 (737)
T TIGR02441 328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL 403 (737)
T ss_pred C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3 124578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCee
Q 009256 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 456 (539)
Q Consensus 377 ~~~~~~~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~v 456 (539)
+++++++++++||+|||++||+.++|+++|+++++++++++|++||||++++++++..+.+|+|++|+|||+|++.+++|
T Consensus 404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv 483 (737)
T TIGR02441 404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL 483 (737)
T ss_pred EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccc
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGG 536 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d 536 (539)
||++++.|++++++++..+++.+||.||+++|.|||++||++.++++|++.++++|+++++||+++.++|+|+|||+++|
T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D 563 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD 563 (737)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 009256 537 CWS 539 (539)
Q Consensus 537 ~~~ 539 (539)
.++
T Consensus 564 ~vG 566 (737)
T TIGR02441 564 EVG 566 (737)
T ss_pred Hhh
Confidence 864
No 4
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.4e-96 Score=811.43 Aligned_cols=514 Identities=36% Similarity=0.594 Sum_probs=462.4
Q ss_pred EEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-ecCCCCcccCCCchhhhhhcCCCcccccc
Q 009256 7 TMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 7 ~~~~~~~~v~~i~l~~p-~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
+++..+++|++|||||| + .|+||.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++...........+.
T Consensus 3 ~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 82 (699)
T TIGR02440 3 TLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALA 82 (699)
T ss_pred EEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHH
Confidence 34443689999999999 4 699999999999999999999999999997 68899999999999985421111111222
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
...++++ .+|.++||||||+|||+|+|||++|+|+||+|||+++ ++|++||+++|++|++|++++|+|++|..+|++
T Consensus 83 ~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~ 161 (699)
T TIGR02440 83 QQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALD 161 (699)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHH
Confidence 3344566 6799999999999999999999999999999999976 799999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHH-------------HHhcCchhhhhhhcccccCChHHHHHHHH
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD-------------IAARRKPWIRSLHRTDKLGSLSEAREVLK 228 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~-------------la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (539)
|+++|++++|+||+++||||+|+|++++.+++.++|++ ++..+|.+.+ . ...
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~------------~---~~~ 226 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRA------------L---LFD 226 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHH------------H---HHH
Confidence 99999999999999999999999999999999999984 3333322211 1 111
Q ss_pred HHHH-HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCC
Q 009256 229 LARL-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRG 307 (539)
Q Consensus 229 ~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~ 307 (539)
.+.+ ..+++..+|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.|+. . ..+++
T Consensus 227 ~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~ 303 (699)
T TIGR02440 227 QAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAK 303 (699)
T ss_pred HHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCccc
Confidence 2222 345777899999999999999999999999999999999999999999999999999988876552 2 23467
Q ss_pred cceEEEEcCCCCcHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+++|+|||+|.||.+||..++ ++|++|++||++++.++++.+++.+.+.++++++.++..+.+..++++++++++++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 383 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFK 383 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhc
Confidence 899999999999999999998 5899999999999999999999999999999999999999998999999999999899
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+|||++||++++|+++|+++++++++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~ 463 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSE 463 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
++++++..+++.+||.||+++|.|||++||++.++++|++.++++|++++|||++++++|+|+|||+++|.++
T Consensus 464 ~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vG 536 (699)
T TIGR02440 464 QTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVG 536 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999988999999999999764
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=4.7e-96 Score=809.37 Aligned_cols=529 Identities=35% Similarity=0.566 Sum_probs=464.9
Q ss_pred cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCCchhhhhhcCCCcccc
Q 009256 5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
.+.++.++++|++|||||| +.|+||.+|+++|.+++++++.|+++|+|||+|. |++||+|+|++++...........
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 4667775689999999999 4699999999999999999999999999999986 489999999998854321111112
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+|
T Consensus 86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 223344566 6799999999999999999999999999999999987 4899999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHH-HHHHhC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL-QAKKTA 238 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 238 (539)
++|+++|++++|+||+++||||+|+|++++.+++.++|+++....+ ....-......++... ...+..++. ..++++
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLPVRERLLEGNPLGR-ALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCCchhhhcccCchhH-HHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988421100 0000000000000000 111222333 345677
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcceEEEEcCCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL 318 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~kI~iIG~G~ 318 (539)
.+|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.+|..++.|+. + ..++.+++|+|||+|.
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 799999999999999999999999999999999999999999999999999988877552 2 2456899999999999
Q ss_pred CcHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccC
Q 009256 319 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (539)
Q Consensus 319 mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe 397 (539)
||.+||..++ .+|++|+++|++++.++++.+++.+.++++++++.++..+....+++++++++++++++||+|||++||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999888899999999999889999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHH
Q 009256 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477 (539)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~ 477 (539)
++++|+++|+++++++++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 478 ~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
.+|+.|++++|.|||++||++.++++|++.++++|++++|||.++.++|||+|||+++|..+
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~G 541 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVG 541 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988999999999999753
No 6
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-55 Score=409.95 Aligned_cols=244 Identities=33% Similarity=0.529 Sum_probs=223.2
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+++|+.||||||+ +|+|+..++.+|.+++..++.|+.++++||||.|+.||+|.|++++......+-... .+.+.+
T Consensus 44 d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~---~~~~~~ 120 (290)
T KOG1680|consen 44 DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDG---IFLRVW 120 (290)
T ss_pred CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccc---cccchh
Confidence 7899999999996 699999999999999999999999999999999999999999999987443321111 122334
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++|++|.+|||+||+|.||.++|+++++||++++
T Consensus 121 -~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~ 199 (290)
T KOG1680|consen 121 -DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLG 199 (290)
T ss_pred -hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCccc
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 009256 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 250 (539)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 250 (539)
|+||+++||||+|||.++++.+|.+|+++|++.|+..++ +.|++
T Consensus 200 AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~------------------------------------~~K~s 243 (290)
T KOG1680|consen 200 AQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR------------------------------------ADKES 243 (290)
T ss_pred HHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHHH
Confidence 999999999999999999999999999999999985443 45788
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 251 ~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
++.+.+.++.+++..|...|...+.++|.+||+.+|.+||++++.
T Consensus 244 vn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~ 288 (290)
T KOG1680|consen 244 VNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS 288 (290)
T ss_pred HHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence 999999999999999999999999999999999999999999874
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-53 Score=418.03 Aligned_cols=253 Identities=30% Similarity=0.470 Sum_probs=228.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (257)
T PRK05862 1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M 76 (257)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence 7888899998 7899999999996 699999999999999999999999999999999999999999998754221 1
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.......+ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 155 (257)
T PRK05862 77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 11112233455 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|+++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK05862 156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVM------------------------------ 205 (257)
T ss_pred HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.|+|+++++++|++||+|++
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 206 ------MAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 4567788777788999999999999999999999999999999998875
No 8
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-53 Score=419.02 Aligned_cols=253 Identities=40% Similarity=0.655 Sum_probs=226.9
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
++.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++...........+..
T Consensus 3 ~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (257)
T PRK07658 3 FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ 81 (257)
T ss_pred eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence 678888 7999999999998899999999999999999999999999999999999999999998854322111112223
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
....++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++|++
T Consensus 82 ~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 160 (257)
T PRK07658 82 LGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMML 160 (257)
T ss_pred HHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence 334566 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
+|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------------- 205 (257)
T PRK07658 161 TSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTR----------------------------------- 205 (257)
T ss_pred cCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999875432
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||+|++.
T Consensus 206 -~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~ 255 (257)
T PRK07658 206 -AVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFS 255 (257)
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 45677777777788999999999999999999999999999999988763
No 9
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-53 Score=416.43 Aligned_cols=252 Identities=31% Similarity=0.476 Sum_probs=225.7
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcccccc
Q 009256 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
.+.++. +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++...... ....+.
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~-~~~~~~ 81 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKA-VAREMA 81 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChh-hHHHHH
Confidence 578888 78999999999988999999999999999999999999999999998 689999999987542111 111222
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (539)
....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++
T Consensus 82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2334556 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchh
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (539)
++|++++|+||+++||||+|||++++.+++.+++++++..||.+++
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------------- 206 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA---------------------------------- 206 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999986543
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|...+..++.++|++|++.+|++||+|++.
T Consensus 207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 256 (258)
T PRK09076 207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWK 256 (258)
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 34677777777788999999999999999999999999999999998864
No 10
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-53 Score=416.89 Aligned_cols=255 Identities=33% Similarity=0.544 Sum_probs=226.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCC-
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG- 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~- 77 (539)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 78 (260)
T PRK05980 1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA 78 (260)
T ss_pred CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence 66 4688888 7999999999995 6999999999999999999999999999999998 7999999999875422111
Q ss_pred --cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
....+.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (260)
T PRK05980 79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG 157 (260)
T ss_pred hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence 1112222233455 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 211 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVA-------------------------- 211 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999875443
Q ss_pred HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||+|++
T Consensus 212 ----------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 212 ----------AILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPAY 260 (260)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 3467777777778899999999999999999999999999999998763
No 11
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-53 Score=416.21 Aligned_cols=255 Identities=25% Similarity=0.380 Sum_probs=227.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC--
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (539)
|+|+.+.++. +++|++||||||+ .|++|.+|+.+|.+++++++ |+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence 8888899999 7999999999996 69999999999999999999 99999999999999999999999875321111
Q ss_pred cc-cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH
Q 009256 78 DV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 78 ~~-~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
.. ..+......++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 00 01112223355 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~--------------------------- 210 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLA--------------------------- 210 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999875432
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|+++++.+|++||+|++
T Consensus 211 ---------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 211 ---------LIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred ---------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777788899999999999999999999999999999998875
No 12
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-53 Score=419.61 Aligned_cols=256 Identities=28% Similarity=0.418 Sum_probs=226.4
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC--
Q 009256 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-- 76 (539)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-- 76 (539)
|+ ++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 55 57899998 8999999999995 6999999999999999999999999999999999999999999988542110
Q ss_pred -----Ccccc---cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhh
Q 009256 77 -----GDVSL---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (539)
Q Consensus 77 -----~~~~~---~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 148 (539)
..... +.....+++ +.+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 00011 112234555 668999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHH
Q 009256 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 227 (539)
Q Consensus 149 ~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (539)
+|++++|..+|++|+++|++++|+||+++||||+|||+ +++++++.+++++|++.||.+++
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------ 221 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------ 221 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence 99999999999999999999999999999999999986 88999999999999999886543
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.|+|++|++.+|++||+|++
T Consensus 222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 3466777777778899999999999999999999999999999998875
No 13
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-53 Score=413.14 Aligned_cols=252 Identities=29% Similarity=0.434 Sum_probs=224.4
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+.|.+++ +++|++||||||+ .|+||.+|+++|.++++.++ +++|+|||||.|++||+|+|++++...... .....
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~-~~~~~ 77 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAG-EGMHH 77 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccch-hHHHH
Confidence 4688888 7899999999995 69999999999999999997 789999999999999999999998643211 11112
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
.....+++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+++
T Consensus 78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 23344566 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 203 (255)
T PRK08150 157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF--------------------------------- 203 (255)
T ss_pred HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999875443
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++.+|++||+|+..|
T Consensus 204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 346777777777889999999999999999999999999999999988643
No 14
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=6.9e-53 Score=414.90 Aligned_cols=255 Identities=33% Similarity=0.546 Sum_probs=230.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++.+... ..
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK05809 1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE 78 (260)
T ss_pred CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence 8999999999 7899999999996 6999999999999999999999999999999999 99999999998864321 11
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+.....+++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 111222334566 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 208 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVK----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875443
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.++|+++++.+|++||+|++
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 209 -------LCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 4567788777888999999999999999999999999999999998875
No 15
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.6e-53 Score=412.24 Aligned_cols=252 Identities=25% Similarity=0.407 Sum_probs=224.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+..+++++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 81 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS 81 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence 666788888657899999999995 6999999999999999999999999999999998 69999999998754321 11
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+.....+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 112223344566 6799999999999999999999999999999999999999999999998 88888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 210 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR----------------------------- 210 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999876543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~ 291 (539)
.+|+.++.....+++++++.|...+..++.++|+++++.+|++||+
T Consensus 211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 3467777777788999999999999999999999999999999985
No 16
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=9e-53 Score=414.42 Aligned_cols=255 Identities=23% Similarity=0.338 Sum_probs=225.7
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
..+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 9 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 87 (266)
T PRK08139 9 EAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFR 87 (266)
T ss_pred cCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHH
Confidence 356788998 8999999999996 59999999999999999999999999999999999999999999875422111111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|+|++|..+|+
T Consensus 88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 88 ALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 1222234556 679999999999999999999999999999999999999999999999999765 56899999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
+++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 214 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR------------------------------- 214 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999876543
Q ss_pred chhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|...+..++.++|+++++++|++||+|++.
T Consensus 215 -----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 264 (266)
T PRK08139 215 -----IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWR 264 (266)
T ss_pred -----HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 45677888778888999999999999999999999999999999988863
No 17
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.4e-52 Score=410.98 Aligned_cols=250 Identities=31% Similarity=0.454 Sum_probs=225.3
Q ss_pred cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccc
Q 009256 5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ...+.
T Consensus 3 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~~~ 78 (255)
T PRK09674 3 ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---AATLN 78 (255)
T ss_pred eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---hhhHH
Confidence 477888 7899999999996 699999999999999999999999999999999999999999998754211 11122
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (539)
.....++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|+.+|++++
T Consensus 79 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ 157 (255)
T PRK09674 79 DPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMV 157 (255)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2234556 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchh
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (539)
++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~---------------------------------- 203 (255)
T PRK09674 158 LTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR---------------------------------- 203 (255)
T ss_pred HcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999875443
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|...+..++.++|+++++.+|++||+|++.
T Consensus 204 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~ 253 (255)
T PRK09674 204 --AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFK 253 (255)
T ss_pred --HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 44677777777889999999999999999999999999999999988763
No 18
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-52 Score=412.10 Aligned_cols=256 Identities=26% Similarity=0.362 Sum_probs=225.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+|+++.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence 8899999999 7999999999996 6999999999999999999999999999999999999999999987542111101
Q ss_pred ccc--chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 80 SLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 80 ~~~--~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
... .....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|..
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~ 157 (262)
T PRK05995 80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER 157 (262)
T ss_pred hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence 111 12234556 67999999999999999999999999999999999999999999999999988765 589999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 209 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR---------------------------- 209 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999875443
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhH-HHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~-l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++. ++.|...+..++.++|+++++.+|++||+|++.
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 260 (262)
T PRK05995 210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAWR 260 (262)
T ss_pred --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 34667777667778888 888999999999999999999999999998753
No 19
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-52 Score=411.28 Aligned_cols=251 Identities=24% Similarity=0.344 Sum_probs=221.3
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
|.++. +++|++||||||+ .|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus 1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 78 (255)
T PRK06563 1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE 78 (255)
T ss_pred CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence 45677 7899999999996 69999999999999999999999999999999999999999999885422111 111111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
...+.+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+++++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 12233323588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
||++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 203 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ----------------------------------- 203 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++.+|++||+|++
T Consensus 204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 3466777777778899999999999999999999999999999998875
No 20
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-52 Score=413.59 Aligned_cols=255 Identities=27% Similarity=0.356 Sum_probs=225.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC-
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~-~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (539)
|| +.+.+++ +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.+.....
T Consensus 1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (266)
T PRK09245 1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG 78 (266)
T ss_pred CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 66 5688998 7899999999996 699995 99999999999999999999999999999999999999985422110
Q ss_pred -cc----cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhcccc
Q 009256 78 -DV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (539)
Q Consensus 78 -~~----~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 152 (539)
.. ..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~ 157 (266)
T PRK09245 79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157 (266)
T ss_pred ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence 00 01111223455 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHH
Q 009256 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (539)
Q Consensus 153 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (539)
++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------- 214 (266)
T PRK09245 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR----------------------- 214 (266)
T ss_pred HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999999986543
Q ss_pred HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.++|++|++.+|++||+|.+
T Consensus 215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 3467777777778889999999999999999999999999999998875
No 21
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-52 Score=413.07 Aligned_cols=256 Identities=24% Similarity=0.330 Sum_probs=227.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEecCCCCcccCCCchhhhhhcCCC-
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~-~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (539)
|+|+.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence 8999999999 7999999999996 69999999999999999999876 499999999999999999999875422111
Q ss_pred ---c-ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccc
Q 009256 78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (539)
Q Consensus 78 ---~-~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ 153 (539)
. ...+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 011222234556 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHH
Q 009256 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (539)
Q Consensus 154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (539)
+|+.+|++++++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------ 214 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------ 214 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998875443
Q ss_pred HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++.+.++.|...+..++.|+|++|++.+|++||+|++
T Consensus 215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 3466777777778899999999999999999999999999999999875
No 22
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.1e-52 Score=410.36 Aligned_cols=257 Identities=20% Similarity=0.268 Sum_probs=222.2
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+ |+++.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 44 8899999844789999999995 699999999999999999999999999999999999999999998754211110
Q ss_pred ccc--cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH
Q 009256 79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 79 ~~~--~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
... ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|.
T Consensus 81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~ 158 (265)
T PRK05674 81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE 158 (265)
T ss_pred hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence 011 112234556 67899999999999999999999999999999999999999999999999988765 48999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|+++++||++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------- 211 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR--------------------------- 211 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999986543
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~-e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++++.. +...+..++.|+|+++++.+|++||+|++.
T Consensus 212 ---------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~ 262 (265)
T PRK05674 212 ---------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ 262 (265)
T ss_pred ---------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence 34677777777778887765 456788899999999999999999998864
No 23
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-52 Score=410.06 Aligned_cols=253 Identities=32% Similarity=0.472 Sum_probs=225.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC-Ccc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~ 79 (539)
|+|+.+.++. +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (257)
T PRK06495 1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79 (257)
T ss_pred CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence 8889999999 79999999999988999999999999999999999999999999999999999999987543111 111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++++|++++|..+|
T Consensus 80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 11222234556 67999999999999999999999999999999999999999999999996 456789999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------ 205 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++.+|++||+|++
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 3466777777778899999999999999999999999999999999885
No 24
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=5e-52 Score=408.57 Aligned_cols=254 Identities=28% Similarity=0.466 Sum_probs=224.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
.+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.+.....
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---- 83 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD---- 83 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence 3567777536899999999996 69999999999999999999999999999999999999999999875422111
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 111223455 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
++++|++++|+||+++||||+|||++++.+++.++++++++.+|.+++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL-------------------------------- 210 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999886543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh--CCHHHHhHHHHHHhhhhccCCCC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVPN 297 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~--~s~~~~~~~~af~~kr~~~~~~~ 297 (539)
.+|+.++.....+++++++.|...+..++ .++|++|++++|++||+|+|.|+
T Consensus 211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 264 (265)
T PLN02888 211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK 264 (265)
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence 44677777777788999999998888875 59999999999999999998663
No 25
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-52 Score=408.93 Aligned_cols=252 Identities=31% Similarity=0.436 Sum_probs=223.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 8889999998 7899999999996 5999999999999999999999999999999998 7999999999875422111
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
........+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+
T Consensus 79 --~~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 --WPESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred --hhhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0111222333 3 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 205 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR----------------------------- 205 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999886543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHH--HHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e--~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.+++....+++++++.| ...+..++.++|++|++.+|++||+|++
T Consensus 206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 346777777777889999998 5578899999999999999999998875
No 26
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-52 Score=409.15 Aligned_cols=257 Identities=23% Similarity=0.313 Sum_probs=222.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+|+.+.+++++++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence 677888898833689999999996 6999999999999999999999999999999999999999999987542111111
Q ss_pred c--ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 80 S--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 80 ~--~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
. ........++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus 81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 1 1112234455 67999999999999999999999999999999999999999999999999999998855 559999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|++|+++|++++|+||+++||||+|+|++++.+.+.++++++++.||.+++
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~---------------------------- 210 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA---------------------------- 210 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999876543
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++......+++.++.|...+..++.|+|++|++.+|++||+|++.
T Consensus 211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~ 260 (262)
T PRK07468 211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWR 260 (262)
T ss_pred --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 34566666555566888999999999999999999999999999998763
No 27
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-52 Score=409.93 Aligned_cols=255 Identities=30% Similarity=0.492 Sum_probs=227.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+ +++.+++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK07657 1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ 78 (260)
T ss_pred CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence 67 578888646899999999996 6999999999999999999999999999999999 59999999998754211 11
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 112222334556 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------- 208 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875443
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++++|++||+|++
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 209 -------QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4467777777778899999999999999999999999999999998875
No 28
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=4.6e-52 Score=408.79 Aligned_cols=253 Identities=24% Similarity=0.343 Sum_probs=222.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+ +.+.+++ +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-- 76 (261)
T PRK03580 1 MS-ESLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-- 76 (261)
T ss_pred CC-ceEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence 66 3588888 78999999999988999999999999999999999999999999998 7999999999875422111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.......+ .++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11111122345 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------ 205 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHH----HHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~----~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.. .+..++.++|+++++++|++||+|++
T Consensus 206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 34667777777778888888863 78889999999999999999998875
No 29
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=3.6e-52 Score=408.68 Aligned_cols=250 Identities=26% Similarity=0.383 Sum_probs=221.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC-Ccc-ccc
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLM 82 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~-~~~ 82 (539)
+.+++ +++|++||||||+ .|++|.+|+.+|.++++.+++|+ +|+|||||.|++||+|+|++++...... ... ..+
T Consensus 1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 35677 7899999999995 69999999999999999999998 9999999999999999999987642111 000 111
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
......++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l 157 (256)
T TIGR02280 79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL 157 (256)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 11223445 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
+++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~--------------------------------- 204 (256)
T TIGR02280 158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLA--------------------------------- 204 (256)
T ss_pred HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999875443
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||+|++
T Consensus 205 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 205 ---LTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 4567787777778899999999999999999999999999999999885
No 30
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-52 Score=409.09 Aligned_cols=253 Identities=25% Similarity=0.352 Sum_probs=223.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++.+.++. +++|++||||||+ +|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 46788888 7899999999996 699999999999999999999999999999999999999999999865321111110
Q ss_pred --c-chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 82 --~-~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
+ ......++ .+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus 83 ~~~~~~~~~~~~--~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 83 GSYDPSRIDALL--KGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhHHHHHH--HHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 1 01111222 378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~----------------------------- 211 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ----------------------------- 211 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875443
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++
T Consensus 212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 4467777777778899999999999999999999999999999998875
No 31
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=3.5e-52 Score=407.01 Aligned_cols=245 Identities=30% Similarity=0.475 Sum_probs=220.0
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
+++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence 5789999999996 699999999999999999999999999999998 589999999998754221 1111222333455
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~ 169 (539)
+ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++||+++
T Consensus 81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 5 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHH
Q 009256 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249 (539)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 249 (539)
+|+||+++||||+|||++++.+++.+++++|++.||.+++ .+|+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~ 203 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK 203 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence 9999999999999999999999999999999999986543 4567
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 250 ~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.++.....++++.++.|...+..++.++|++|++++|++||+|++
T Consensus 204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 787777788999999999999999999999999999999999875
No 32
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.9e-52 Score=407.56 Aligned_cols=251 Identities=32% Similarity=0.469 Sum_probs=225.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+++.++.++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++..... ...+
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~ 83 (261)
T PRK08138 7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY 83 (261)
T ss_pred CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence 567888756889999999996 699999999999999999999999999999999999999999998764211 1112
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
.....+++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 162 (261)
T PRK08138 84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM 162 (261)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence 22334566 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------------- 209 (261)
T PRK08138 163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALA--------------------------------- 209 (261)
T ss_pred HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999988865432
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++
T Consensus 210 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 210 ---QIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 4567777777788899999999999999999999999999999998875
No 33
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-52 Score=411.18 Aligned_cols=256 Identities=27% Similarity=0.372 Sum_probs=226.9
Q ss_pred CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+|+.+.+++ ++ +|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence 8899999999 77 99999999995 699999999999999999999999999999999999999999998765321110
Q ss_pred c-----cccch----HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhc
Q 009256 79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR 149 (539)
Q Consensus 79 ~-----~~~~~----~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 149 (539)
. ..+.. ..++++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 0 00100 123345 5689999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhcccccCChHHHHHHHH
Q 009256 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK 228 (539)
Q Consensus 150 l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (539)
|+|++|+.+|++|++||++++|+||+++||||+|+|++++.+++.++++++++. ||.++.
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~------------------- 220 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMA------------------- 220 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHH-------------------
Confidence 999999999999999999999999999999999999999999999999999985 765432
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++.+|++||+|.+
T Consensus 221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 221 -----------------VIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred -----------------HHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 4467777777778899999999999999999999999999999998875
No 34
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-52 Score=406.25 Aligned_cols=250 Identities=28% Similarity=0.413 Sum_probs=221.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~--- 75 (254)
T PRK08252 1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERP--- 75 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccch---
Confidence 55 5688898 7999999999996 6999999999999999999999999999999999999999999988642111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.........++ ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 76 ~~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 76 SIPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred hhhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 11111111222 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 202 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------ 202 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus 203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 3466777777778899999999999999999999999999999998875
No 35
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-52 Score=409.89 Aligned_cols=255 Identities=25% Similarity=0.405 Sum_probs=226.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCC-cc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-DV 79 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~-~~ 79 (539)
.+.|.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 35688888 7899999999996 6999999999999999999999999999999998 7999999999875421111 11
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+......++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 12223334455 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|||++++.+++.+++++++..||.+++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 217 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------ 217 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++..++.|...+..++.++|++|++.+|++||+|++.
T Consensus 218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~ 267 (269)
T PRK06127 218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFK 267 (269)
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence 34667777777788999999999999999999999999999999998763
No 36
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-52 Score=411.40 Aligned_cols=253 Identities=30% Similarity=0.425 Sum_probs=224.9
Q ss_pred cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC-C--ccc
Q 009256 5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-G--DVS 80 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~--~~~ 80 (539)
.+.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... . ...
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 678888 7999999999995 6999999999999999999999999999999999999999999987432111 1 111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCC-CcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~vG~~~a 159 (539)
.+.....+++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|..+|
T Consensus 97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a 175 (277)
T PRK08258 97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA 175 (277)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence 1222234556 679999999999999999999999999999999999999999999999995 78899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 225 (277)
T PRK08258 176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------ 225 (277)
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|...+..++.++|++|++++|++||+|++.
T Consensus 226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 275 (277)
T PRK08258 226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFE 275 (277)
T ss_pred ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 44677777777889999999999999999999999999999999998863
No 37
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=7e-52 Score=409.73 Aligned_cols=250 Identities=23% Similarity=0.326 Sum_probs=219.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC-c--c
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D--V 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~--~ 79 (539)
+++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++....... . .
T Consensus 8 ~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PRK09120 8 DTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ 86 (275)
T ss_pred ccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence 5688998 7899999999996 69999999999999999999999999999999999999999999875321111 0 1
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+......++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 165 (275)
T PRK09120 87 ERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA 165 (275)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence 11112233455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------ 215 (275)
T PRK09120 166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR------------------------------ 215 (275)
T ss_pred HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHH--HHHHHhCCH-HHHhHHHHHHhhhh
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA 291 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~--~~~~~~~s~-~~~~~~~af~~kr~ 291 (539)
.+|+.++.....++++.++.|.. .+..++.++ |++|++++|++||.
T Consensus 216 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 216 ------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 44677777777788888888764 455678998 89999999999988
No 38
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-51 Score=406.63 Aligned_cols=255 Identities=24% Similarity=0.309 Sum_probs=227.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC--C
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--G 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~--~ 77 (539)
|| +.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++...... .
T Consensus 1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (260)
T PRK07511 1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS 78 (260)
T ss_pred CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence 77 4578888 7999999999996 6999999999999999999999999999999999999999999988642111 1
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
....+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (260)
T PRK07511 79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ 157 (260)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence 1112223344566 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
++++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~---------------------------- 209 (260)
T PRK07511 158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALA---------------------------- 209 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875432
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||+|++
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 210 --------RIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 4467777777778899999999999999999999999999999998875
No 39
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=5.6e-52 Score=411.07 Aligned_cols=255 Identities=24% Similarity=0.386 Sum_probs=222.5
Q ss_pred CCCcEE---EEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC-
Q 009256 2 AAPRVT---MEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA- 76 (539)
Q Consensus 2 ~~~~v~---~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~- 76 (539)
+|..++ .+. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus 3 ~~~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~ 81 (275)
T PLN02664 3 SYKTLEIIQKSP-NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQS 81 (275)
T ss_pred CccceEEEEecC-CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhccccc
Confidence 355544 333 6899999999996 6999999999999999999999999999999999999999999988542110
Q ss_pred ---C--c----ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchh
Q 009256 77 ---G--D----VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT 147 (539)
Q Consensus 77 ---~--~----~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~ 147 (539)
. . ...+.....+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~ 160 (275)
T PLN02664 82 SSGDRGRSGERLRRKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTL 160 (275)
T ss_pred ccccchhhHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHH
Confidence 0 0 001112233455 67899999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHH
Q 009256 148 QRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 226 (539)
Q Consensus 148 ~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (539)
++|++++|..+|+++++||++++|+||+++||||+|||+ +++.+.+.+++++|++.||.+++
T Consensus 161 ~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~----------------- 223 (275)
T PLN02664 161 QRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT----------------- 223 (275)
T ss_pred HHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH-----------------
Confidence 999999999999999999999999999999999999985 88999999999999999986543
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++++|++||+|.+
T Consensus 224 -------------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 224 -------------------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred -------------------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 3467777777778899999999999999999999999999999999885
No 40
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-52 Score=404.04 Aligned_cols=247 Identities=26% Similarity=0.351 Sum_probs=216.0
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchH
Q 009256 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
+..+..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus 3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG 82 (249)
T ss_pred eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 44444378999999999988999999999999999999999999999999999999999999987542111111111122
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHc
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (539)
..+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|..+|++++++
T Consensus 83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt 158 (249)
T PRK07938 83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT 158 (249)
T ss_pred HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence 34556 67999999999999999999999999999999999999999999999986 456789999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHH
Q 009256 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (539)
|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------ 202 (249)
T PRK07938 159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------ 202 (249)
T ss_pred CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhc
Q 009256 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~ 292 (539)
.+|+.++.....++++.++.|...+..++.++|++|++++|++||+|
T Consensus 203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 44677777777788899999999999999999999999999999975
No 41
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.2e-51 Score=405.11 Aligned_cols=253 Identities=25% Similarity=0.357 Sum_probs=215.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
+.+.+++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 457777635889999999996 6999999999999999999999999999999999 79999999998743211110000
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
......+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 011123455 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 208 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR-------------------------------- 208 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999986543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++..... .......|...+..++.++|++|++++|++||+|++
T Consensus 209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 234555554332 344556677889999999999999999999999875
No 42
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=2.1e-51 Score=402.72 Aligned_cols=251 Identities=27% Similarity=0.338 Sum_probs=214.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
|+++.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~ 77 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG 77 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence 46788898 7999999999996 6999999999999999999999999999999998 69999999998743211 1 11
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 1222234556 679999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
+++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~------------------------------- 205 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA------------------------------- 205 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999986543
Q ss_pred chhHHHHHHHHHHhhcCCchhHH-HHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l-~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++...... ..+ ..|...+..++.++|++|++.+|++||+|++.
T Consensus 206 -----~~K~~l~~~~~~~--~~~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 254 (256)
T TIGR03210 206 -----IAKRSFNMDTAHQ--RGIAGMGMYALKLYYDTAESREGVKAFQEKRKPEFR 254 (256)
T ss_pred -----HHHHHHHHhhccc--chHHHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence 2345555443321 112 23557788899999999999999999998763
No 43
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-51 Score=404.89 Aligned_cols=251 Identities=23% Similarity=0.285 Sum_probs=223.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+++.++. +++|++||||||+ .|++|.+|+.+|.++++.+ .|+++|+|||||.|++||+|+|++++...........+
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07659 6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV 83 (260)
T ss_pred ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence 4588888 7999999999996 6999999999999999999 58899999999999999999999998643211111222
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
.....+++ .++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l 162 (260)
T PRK07659 84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI 162 (260)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence 33344556 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
+++|++++|+||+++||||+|| ++++.+++.++++++++.|+.+++
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~--------------------------------- 208 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMI--------------------------------- 208 (260)
T ss_pred HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 9999999999999999999999 789999999999999999875433
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.++|++|++.+|++||+|++
T Consensus 209 ---~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 209 ---ETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4467777777788999999999999999999999999999999999875
No 44
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-51 Score=403.41 Aligned_cols=254 Identities=31% Similarity=0.447 Sum_probs=227.8
Q ss_pred CCC-CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MAA-PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~-~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+. +.+.++. +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06688 1 MTMVTDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP- 78 (259)
T ss_pred CCCCCceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch-
Confidence 542 4688888 789999999999 579999999999999999999999999999999999999999999986532211
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
..+.....+++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 79 -~~~~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~ 156 (259)
T PRK06688 79 -PDELAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRAR 156 (259)
T ss_pred -HHHHHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHH
Confidence 12333445666 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 157 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~----------------------------- 207 (259)
T PRK06688 157 AAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR----------------------------- 207 (259)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875432
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++
T Consensus 208 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 208 -------YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred -------HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 3466777777778999999999999999999999999999999998875
No 45
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=2.5e-51 Score=403.02 Aligned_cols=253 Identities=21% Similarity=0.296 Sum_probs=222.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--CCCcccCCCchhhhhhcCCC
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~--g~~F~aG~Dl~~~~~~~~~~ 77 (539)
||++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ +|+|||||. |++||+|+|++++......
T Consensus 1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~- 77 (261)
T PRK11423 1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD- 77 (261)
T ss_pred CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence 8999999999 7999999999996 69999999999999999999887 999999986 3899999999987532111
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
...+.....+++ +.+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|+.
T Consensus 78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 112223344566 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|++++++|++++|+||+++||||+|||++++++.+.++++++++.||.+++
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------- 207 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999876543
Q ss_pred CCCchhHHHHHHHHHHhhc-CCc-hhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~-~~~-~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.... .++ +..++.|...+..++.|+|+++++.+|++||+|++
T Consensus 208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 34566654432 233 57788899999999999999999999999999885
No 46
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-51 Score=400.24 Aligned_cols=251 Identities=23% Similarity=0.327 Sum_probs=224.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07260 1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS 79 (255)
T ss_pred CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence 45788888 7899999999996 699999999999999999999999999999999999999999998864221111111
Q ss_pred ---cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 82 ---~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (255)
T PRK07260 80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR 158 (255)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence 222334555 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
+++|+++|++++|+||+++||||+|||++++.+.+.++++++++.||.+++
T Consensus 159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 209 (255)
T PRK07260 159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA----------------------------- 209 (255)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~ 291 (539)
.+|+.++.....++++.+..|...+..++.++|++|++++|++||+
T Consensus 210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 4467777777788999999999999999999999999999999985
No 47
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-51 Score=408.27 Aligned_cols=259 Identities=25% Similarity=0.345 Sum_probs=220.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC-C--
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-- 76 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-~-- 76 (539)
|+++.+.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence 7888899999 7999999999996 699999999999999999999999999999999999999999998753100 0
Q ss_pred ----------C-c--ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCC
Q 009256 77 ----------G-D--VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143 (539)
Q Consensus 77 ----------~-~--~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~ 143 (539)
. . ...+.....+++ .+|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~ 158 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE 158 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence 0 0 001111223455 6789999999999999999999999999999999999999999999999999
Q ss_pred cchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhcccccCChHH
Q 009256 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE 222 (539)
Q Consensus 144 ~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~ 222 (539)
+|++++|++++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++++|++. |+.+++
T Consensus 159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~------------- 225 (296)
T PRK08260 159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVA------------- 225 (296)
T ss_pred cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHH-------------
Confidence 999999999999999999999999999999999999999999999999999999999985 664432
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCC
Q 009256 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHG-GYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (539)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~ 297 (539)
.+|+.++...... .......|...+..++.++|++|++.+|++||+|.+.+.
T Consensus 226 -----------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 226 -----------------------LTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred -----------------------HHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 3456666543221 223445688889999999999999999999999987553
No 48
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=6.1e-51 Score=402.93 Aligned_cols=253 Identities=26% Similarity=0.364 Sum_probs=217.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~ 89 (273)
T PRK07396 12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD 89 (273)
T ss_pred CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence 46788888 7899999999996 6999999999999999999999999999999998 6999999999875321111 01
Q ss_pred ccch-HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~-~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.... ...+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a 168 (273)
T PRK07396 90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA 168 (273)
T ss_pred hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence 1111 122455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 218 (273)
T PRK07396 169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------ 218 (273)
T ss_pred HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.... ..+...+.|...+..++.++|++|++.+|++||+|++.
T Consensus 219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 267 (273)
T PRK07396 219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS 267 (273)
T ss_pred ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence 33455554432 34444557888889999999999999999999998764
No 49
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-51 Score=401.78 Aligned_cols=250 Identities=26% Similarity=0.409 Sum_probs=216.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 85 (262)
T PRK06144 7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV 85 (262)
T ss_pred CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence 45688998 7999999999996 6999999999999999999999999999999998 7999999999875432111111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCccc-CCCCCCcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 2222344566 6789999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------ 214 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------ 214 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++..... .++.+.+.+..++.++|++|++.+|++||+|++
T Consensus 215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 335555554333 345566788899999999999999999998875
No 50
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=4.2e-51 Score=404.13 Aligned_cols=256 Identities=19% Similarity=0.254 Sum_probs=223.8
Q ss_pred CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC--CCcccCCCchhhhhhcCCCc-cc
Q 009256 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-VS 80 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g--~~F~aG~Dl~~~~~~~~~~~-~~ 80 (539)
+.+.+++.+++|++||||||+.|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++........ ..
T Consensus 11 ~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~ 90 (278)
T PLN03214 11 PGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYA 90 (278)
T ss_pred CceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHH
Confidence 5688887348899999999988999999999999999999999999999999987 69999999998753211110 11
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCC-CCCcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~l~r~vG~~~a 159 (539)
.+......++ .+|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|++++|+.+|
T Consensus 91 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a 169 (278)
T PLN03214 91 EFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVA 169 (278)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHH
Confidence 1211223455 6689999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|||++++.+.+.+++++|++.||.+++
T Consensus 170 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 219 (278)
T PLN03214 170 ESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA------------------------------ 219 (278)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.+++....+++++++.|...+..++.++|++|++++|+||.+.||-.
T Consensus 220 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 220 ------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 346677777777788999999999999999999999999999999887643
No 51
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-51 Score=401.43 Aligned_cols=251 Identities=25% Similarity=0.292 Sum_probs=211.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc-cc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (539)
|+.+.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++........ ..
T Consensus 10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 89 (268)
T PRK07327 10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA 89 (268)
T ss_pred CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence 5678888734789999999997 699999999999999999999999999999999999999999998754221111 11
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus 90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (268)
T PRK07327 90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK 168 (268)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence 1122234555 668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
++++||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 217 (268)
T PRK07327 169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR------------------------------- 217 (268)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999986543
Q ss_pred chhHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 241 MPQHQACLDVIEEGIV---HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~---~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.... .+++..+..| ..++.++|+++++.+|++||+|++
T Consensus 218 -----~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 218 -----WTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred -----HHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCC
Confidence 23444443211 1234444443 347889999999999999999885
No 52
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-51 Score=402.94 Aligned_cols=255 Identities=25% Similarity=0.342 Sum_probs=216.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC---cc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---~~ 79 (539)
+.+.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ..
T Consensus 9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (276)
T PRK05864 9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP 88 (276)
T ss_pred CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence 457777535789999999996 69999999999999999999999999999999999999999999874321100 00
Q ss_pred c---ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCC-CcchhhccccccC
Q 009256 80 S---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVG 155 (539)
Q Consensus 80 ~---~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~vG 155 (539)
. .......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|
T Consensus 89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG 167 (276)
T PRK05864 89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG 167 (276)
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence 0 1112233455 668999999999999999999999999999999999999999999999997 7889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 221 (276)
T PRK05864 168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE-------------------------- 221 (276)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999886543
Q ss_pred HhCCCchhHHHHHHHHHHhhcC-CchhHHHHHHHHHH-HHhCCHHHHhHHHHHHhhhhccCC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~e~~~~~-~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++..... ++++.+..|...+. ..+.++|++|++.+|++||+|++.
T Consensus 222 ----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 273 (276)
T PRK05864 222 ----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFT 273 (276)
T ss_pred ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence 345666665554 67777777765332 357899999999999999988753
No 53
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.6e-51 Score=397.30 Aligned_cols=248 Identities=28% Similarity=0.338 Sum_probs=217.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+ +.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~ 77 (254)
T PRK08259 1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL 77 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence 66 4588888 7899999999996 699999999999999999999999999999999999999999998764321 111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.. ....... ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 78 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 78 HP--SGDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hh--hhcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 10 0011112 22347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------ 204 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~ 291 (539)
.+|+.++.....+++++++.|...+..++. +|++|++.+|++|++
T Consensus 205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 346777777777889999999988888887 999999999999876
No 54
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-50 Score=395.57 Aligned_cols=247 Identities=24% Similarity=0.403 Sum_probs=217.4
Q ss_pred CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC
Q 009256 1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (539)
Q Consensus 1 M~~~~v~~~~~~~---~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~ 76 (539)
|+ +.+.+++ ++ +|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++......
T Consensus 1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~ 78 (251)
T PRK06023 1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG 78 (251)
T ss_pred CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence 66 4688888 55 49999999996 6999999999999999999999999999999999999999999987642211
Q ss_pred CcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH
Q 009256 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
. ..+.....+++ ..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 155 (251)
T PRK06023 79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH 155 (251)
T ss_pred c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence 1 11222334566 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------- 208 (251)
T PRK06023 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ--------------------------- 208 (251)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999876543
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhh
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~k 289 (539)
.+|+.++.. ..++++.++.|...+..++.++|+++++++|++|
T Consensus 209 ---------~~K~~l~~~-~~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 209 ---------IARDLMRGP-REDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred ---------HHHHHHHhc-hhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 335566554 3457888888999999999999999999999985
No 55
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1.8e-50 Score=394.38 Aligned_cols=245 Identities=26% Similarity=0.362 Sum_probs=211.3
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchH
Q 009256 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
|.+++ +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|.|++++... ....+...
T Consensus 3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~----~~~~~~~~ 77 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD----QCAAMLAS 77 (251)
T ss_pred EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch----hHHHHHHH
Confidence 67788 78999999999988999999999999999999999999999999999999999999975321 11112222
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHc
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (539)
..+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|+.+|++|++|
T Consensus 78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt 155 (251)
T TIGR03189 78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS 155 (251)
T ss_pred HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence 34556 6799999999999999999999999999999999999999999999999997 467899999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHH-HHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
|++++|+||+++||||+|+|+.+ +++.++ +++|++.||.+++
T Consensus 156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~----------------------------------- 198 (251)
T TIGR03189 156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR----------------------------------- 198 (251)
T ss_pred CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 99999999999999999998644 456665 6899999886543
Q ss_pred HHHHHHHHHhhcCCchhHH-HHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 245 QACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l-~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++++ +.|...+..++.|+|++|++++|++||+|++.
T Consensus 199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 249 (251)
T TIGR03189 199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWE 249 (251)
T ss_pred -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCC
Confidence 346677766667777766 47888899999999999999999999998763
No 56
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-50 Score=402.86 Aligned_cols=254 Identities=22% Similarity=0.207 Sum_probs=215.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchh-hhhh---c-
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQKV---H- 74 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~-~~~~---~- 74 (539)
|+++.+.++. +++|++||||||+ +|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|+++ +... .
T Consensus 2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence 7788889998 8999999999996 699999999999999999999999999999999999999999986 3210 0
Q ss_pred CCC---ccccc---c-h--HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccC-CCCCCc
Q 009256 75 GAG---DVSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF 144 (539)
Q Consensus 75 ~~~---~~~~~---~-~--~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~-Gl~p~~ 144 (539)
... ....+ . . .....+ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~-- 157 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL-- 157 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--
Confidence 000 00111 0 0 011244 45899999999999999999999999999999999999999999997 8875
Q ss_pred chhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHH
Q 009256 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (539)
Q Consensus 145 g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~ 224 (539)
++++ .+++|..+|++|++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 158 ~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------- 220 (298)
T PRK12478 158 TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ--------------- 220 (298)
T ss_pred hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 3333 35699999999999999999999999999999999999999999999999999886543
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhCCHHHH--------hHHHHHHhhhhccCC
Q 009256 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV 295 (539)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~e~~~~~~~~~s~~~~--------~~~~af~~kr~~~~~ 295 (539)
.+|++++.... .+++++++.|...+..++.|+|++ ||+.+|+|||+|++.
T Consensus 221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34677777655 468999999999999999999997 599999999999865
Q ss_pred C
Q 009256 296 P 296 (539)
Q Consensus 296 ~ 296 (539)
.
T Consensus 280 ~ 280 (298)
T PRK12478 280 D 280 (298)
T ss_pred c
Confidence 3
No 57
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-50 Score=395.65 Aligned_cols=247 Identities=27% Similarity=0.311 Sum_probs=219.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~ 77 (249)
T PRK05870 1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A 77 (249)
T ss_pred CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence 55 4578888 7999999999996 69999999999999999999999999999999999999999999986532211 1
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
........+.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 11122233455 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|+ +++.+++.++++++++.||.+++
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------ 204 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 9999999999999999999999999 78999999999999999986543
Q ss_pred CchhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhh
Q 009256 240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~-~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~k 289 (539)
.+|+.++.... .+++++++.|...+..++.++|++|++.+|+++
T Consensus 205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 44677777766 788999999999999999999999999999984
No 58
>PLN02921 naphthoate synthase
Probab=100.00 E-value=4.1e-50 Score=403.27 Aligned_cols=254 Identities=27% Similarity=0.309 Sum_probs=215.5
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcc
Q 009256 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+.|.++.+ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... .
T Consensus 64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~ 142 (327)
T PLN02921 64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P 142 (327)
T ss_pred CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence 456778873 4899999999996 6999999999999999999999999999999999 7999999999875321110 0
Q ss_pred cccch-HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 80 ~~~~~-~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~ 221 (327)
T PLN02921 143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK 221 (327)
T ss_pred hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 11111 112345 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~----------------------------- 272 (327)
T PLN02921 222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR----------------------------- 272 (327)
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999986543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++..... .....+.|...+..++.++|++|++.+|++||+|++.
T Consensus 273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 335566554432 2333344558888999999999999999999998853
No 59
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=3e-50 Score=395.52 Aligned_cols=252 Identities=37% Similarity=0.577 Sum_probs=219.5
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
.++.+.++. .++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (257)
T COG1024 3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE 81 (257)
T ss_pred CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence 456788888 6779999999996 69999999999999999999999999999999999999999999987511111111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+....+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~ 160 (257)
T COG1024 82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK 160 (257)
T ss_pred HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence 2223334466 779999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+|++||+.++++||+++||||+++++ +++++.+.+++++++. ||.+++
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~------------------------------ 209 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALA------------------------------ 209 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHH------------------------------
Confidence 99999999999999999999999985 7999999999999998 543322
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhcc
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~ 293 (539)
.+|+.++.....++++.+..|...+...+.++|++|++.+|++ |+|.
T Consensus 210 ------~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~ 256 (257)
T COG1024 210 ------ATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV 256 (257)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence 3456677776666888899999999989999999999999999 7665
No 60
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6e-50 Score=391.67 Aligned_cols=251 Identities=28% Similarity=0.410 Sum_probs=224.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.+.....
T Consensus 1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-- 77 (258)
T PRK06190 1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-- 77 (258)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh--
Confidence 8999999999 8999999999996 69999999999999999999999999999999999999999999886422111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.. .....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 78 ~~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 78 GA-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred hH-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11 12234566 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|+|++++++++.+++++|++.||.+++
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------ 205 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCC---HHHHhHHHHHHhhhhc
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRAT 292 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s---~~~~~~~~af~~kr~~ 292 (539)
.+|+.++.....+++++++.|...+..++.| +..++...+|+.+.+.
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK06190 206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGRA 255 (258)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhh
Confidence 4467788777888999999999999999999 6677777777776543
No 61
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=3.1e-50 Score=393.96 Aligned_cols=233 Identities=41% Similarity=0.667 Sum_probs=226.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.++||+|||+|.||++||..++..||+|+++|++++.++++...+.+.+.+++++|.+++++.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+|||+++|+.++|+.+|+++..++++++|++||||++++++++..+.+|+||+|+||||||+.+++||++++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++.+|.+.+||.|++++|.|||++||++.++++||+.++++|+ ++++||+++ .++|+|||||+++|..+
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~G 236 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIG 236 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHh
Confidence 99999999999999999888999999999999999999999999995 999999999 68999999999999753
No 62
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-50 Score=395.37 Aligned_cols=250 Identities=28% Similarity=0.438 Sum_probs=220.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus 3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~ 80 (262)
T PRK07509 3 DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKLL 80 (262)
T ss_pred ceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhhH
Confidence 6788999 7999999999995 69999999999999999999999999999999999999999999876432111 1111
Q ss_pred -------chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 83 -------PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 83 -------~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
.....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 81 FKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred hhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 11223344 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|++++++|++++|+||+++||||+|++ ++.+++.++++++++.||.+++
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~-------------------------- 211 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIA-------------------------- 211 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999995 3688999999999999876543
Q ss_pred HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus 212 ----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 212 ----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 3466777777778889999999999999999999999999999998874
No 63
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-49 Score=388.86 Aligned_cols=244 Identities=19% Similarity=0.248 Sum_probs=216.2
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.... ...+..
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~ 76 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE 76 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence 56777 7899999999996 69999999999999999999999999999999999999999999875421 111223
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
.+..++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|. +|+++++
T Consensus 77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll 154 (248)
T PRK06072 77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV 154 (248)
T ss_pred HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence 344556 67899999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
+|++++|+||+++||||++ +++.+++.++|+++++.||.+++
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~----------------------------------- 196 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI----------------------------------- 196 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 9999999999999999963 46789999999999999875443
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|.+.+..++.++|++|++.+|++||+|++.
T Consensus 197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 246 (248)
T PRK06072 197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFK 246 (248)
T ss_pred -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCC
Confidence 34667777767788999999999999999999999999999999998853
No 64
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-49 Score=385.79 Aligned_cols=238 Identities=25% Similarity=0.382 Sum_probs=209.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
+++++ +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++|+|||||.|++||+|+|+++... ...+..
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~ 73 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD 73 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence 56788 7899999999996 6999999999999999999865 9999999999999999999985311 111223
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
...+++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l 152 (243)
T PRK07854 74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL 152 (243)
T ss_pred HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence 334566 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
||++++|+||+++||||+|++ +. ++.+++++|++.||.+++
T Consensus 153 tg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~----------------------------------- 193 (243)
T PRK07854 153 GAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQ----------------------------------- 193 (243)
T ss_pred cCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999975 22 789999999999876543
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.. .+++++++.|...+..++.++|+++++.+|++||+|.+
T Consensus 194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 345666654 56788899999999999999999999999999998875
No 65
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.1e-49 Score=387.16 Aligned_cols=251 Identities=18% Similarity=0.208 Sum_probs=215.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+|+++.+++ +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++.+.......
T Consensus 1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07112 1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA 77 (255)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence 7889999999 7999999999996 69999999999999999998 469999999999999999999988653221111
Q ss_pred c-ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 80 ~-~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
. .......+++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus 78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 1 1122234566 679999999999999999999999999999999999999999999999999865 567999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|||+++. .+.++++++++.||.+++
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~----------------------------- 204 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA----------------------------- 204 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence 9999999999999999999999999987663 578899999999876543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.. ...+++.++.|...+..++.++|+++++.+|++||+|.+.
T Consensus 205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 253 (255)
T PRK07112 205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPWE 253 (255)
T ss_pred -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCC
Confidence 234555543 3457888999999999999999999999999999988764
No 66
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-49 Score=388.20 Aligned_cols=250 Identities=25% Similarity=0.345 Sum_probs=218.8
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhc-CCCc-cc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS 80 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~ 80 (539)
+.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... .... ..
T Consensus 6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 4577888 7899999999996 69999999999999999999999999999999999999999999875421 1110 11
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++ ..+|+
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~ 162 (260)
T PRK07827 85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA 162 (260)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence 1222334566 679999999999999999999999999999999999999999999999999999999999875 57999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
+++++|++++|+||+++||||++++ ++.+++.++++++++.|+.+++
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~------------------------------- 209 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLA------------------------------- 209 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999974 5999999999999999875443
Q ss_pred chhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.+++.....+++.++.|...+..++.++|+++++++|++||+|++
T Consensus 210 -----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~ 258 (260)
T PRK07827 210 -----ESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW 258 (260)
T ss_pred -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4467777777778899999999999999999999999999999998764
No 67
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=9.6e-50 Score=389.85 Aligned_cols=244 Identities=35% Similarity=0.557 Sum_probs=222.8
Q ss_pred EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchH
Q 009256 7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 7 ~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
.+++ +|+|++|+|||| +.|++|.+|+++|.++++.++.|+++|+||++|.+++||+|.|++++.... ......+...
T Consensus 1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~ 78 (245)
T PF00378_consen 1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSD-EEEAREFFRR 78 (245)
T ss_dssp EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHH-HHHHHHHHHH
T ss_pred CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccc-cccccccchh
Confidence 3677 799999999999 689999999999999999999999999999999999999999999998762 2223345555
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHc
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (539)
...++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus 79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 66777 77999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHH
Q 009256 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (539)
|++++|+||+++||||+|+|++++.+++.+++++++..|+.+++
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------ 201 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------ 201 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999999875543
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhh
Q 009256 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~k 289 (539)
.+|+.++......+++.++.|...+..++.++|++|++++|+||
T Consensus 202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 44677777777888999999999999999999999999999997
No 68
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=2.7e-49 Score=401.51 Aligned_cols=290 Identities=24% Similarity=0.345 Sum_probs=220.5
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCC-cc-
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-DV- 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~-~~- 79 (539)
+.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 4688888 7999999999996 6999999999999999999999999999999998 8999999999875422111 00
Q ss_pred c-ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 80 ~-~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
. .+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus 82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~ 159 (342)
T PRK05617 82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL 159 (342)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence 0 1112223455 6789999999999999999999999999999999999999999999999999999999999977 78
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHH------------HHHhcC---c--------hhhhhhhccc
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARR---K--------PWIRSLHRTD 215 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------~la~~~---~--------~~~~~~~~~~ 215 (539)
|++|++||++++|+||+++||||+|+|++++.+...++++ .+.+.+ | ..+...+...
T Consensus 160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 239 (342)
T PRK05617 160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD 239 (342)
T ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998876332221 111110 0 0000111111
Q ss_pred ccCChHHHHHHH--HHHHHHHH-HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHH-hh-h
Q 009256 216 KLGSLSEAREVL--KLARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-AQ-R 290 (539)
Q Consensus 216 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~-~k-r 290 (539)
.+..+..+++.- .++.+.++ -......+...+|++++++...+++++++.|...+..++.++|++|++++|+ +| |
T Consensus 240 ~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r 319 (342)
T PRK05617 240 TVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDR 319 (342)
T ss_pred CHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCC
Confidence 111111111000 01111111 2223344666788999988888999999999999999999999999999997 76 7
Q ss_pred hccCCC
Q 009256 291 ATSKVP 296 (539)
Q Consensus 291 ~~~~~~ 296 (539)
+|++.+
T Consensus 320 ~p~~~~ 325 (342)
T PRK05617 320 NPKWSP 325 (342)
T ss_pred CCCCCC
Confidence 777644
No 69
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.3e-48 Score=381.36 Aligned_cols=245 Identities=21% Similarity=0.290 Sum_probs=220.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|.++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 78 (249)
T PRK07110 2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK-- 78 (249)
T ss_pred CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence 5678888998 7999999999996 69999999999999999999999999999999999999999999876432211
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.. .+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~~~~--~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTFTE--ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhHhh--HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 11111 3556 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++++||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------ 205 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~ 287 (539)
.+|+.++.....++++.++.|...+..++.++|++|++++..
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 456778887788899999999999999999999999998753
No 70
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.6e-48 Score=390.26 Aligned_cols=253 Identities=25% Similarity=0.312 Sum_probs=213.5
Q ss_pred cEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-------CCcccCCCchhhhhhc-
Q 009256 5 RVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH- 74 (539)
Q Consensus 5 ~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-------~~F~aG~Dl~~~~~~~- 74 (539)
++.++++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 24 ~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~ 103 (302)
T PRK08321 24 DITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGY 103 (302)
T ss_pred eEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccc
Confidence 4667663 5789999999996 5999999999999999999999999999999998 5999999999763210
Q ss_pred ---CCC--c-cc--ccch-HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEee-CCceEeCCcccCCCCCCc
Q 009256 75 ---GAG--D-VS--LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGF 144 (539)
Q Consensus 75 ---~~~--~-~~--~~~~-~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~ 144 (539)
... . .. .... ...+++ +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~ 182 (302)
T PRK08321 104 QYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGG 182 (302)
T ss_pred cccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCc
Confidence 000 0 00 0001 111344 56889999999999999999999999999999999 699999999999999999
Q ss_pred chhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHH
Q 009256 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (539)
Q Consensus 145 g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~ 224 (539)
+++++|+|++|..+|+++++||++++|+||+++||||+|||++++.+++.+++++|++.|+.+++
T Consensus 183 ~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------- 247 (302)
T PRK08321 183 YGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR--------------- 247 (302)
T ss_pred hHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++.... .+......|...+..++.++|+++++.+|++||+|.+.
T Consensus 248 ---------------------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~ 296 (302)
T PRK08321 248 ---------------------MLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWS 296 (302)
T ss_pred ---------------------HHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 33556655433 34444566888999999999999999999999998863
No 71
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.7e-48 Score=400.19 Aligned_cols=289 Identities=22% Similarity=0.256 Sum_probs=218.9
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc-ccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSL 81 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~ 81 (539)
+.+.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ...
T Consensus 11 ~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 89 (379)
T PLN02874 11 EVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLE 89 (379)
T ss_pred CceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHH
Confidence 4688888 7999999999996 699999999999999999999999999999999999999999999854221111 011
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ++++
T Consensus 90 ~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~ 167 (379)
T PLN02874 90 VVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEY 167 (379)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHH
Confidence 111122334 56899999999999999999999999999999999999999999999999999999999999985 8999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhh----------------------cccccCC
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH----------------------RTDKLGS 219 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~----------------------~~~~~~~ 219 (539)
|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+..+. +.-..+.
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDT 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCC
Confidence 999999999999999999999999988876322221 00000000000000 0000001
Q ss_pred hHHHHHHHH---------HHHHHHH-HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhC---CHHHHhHHHHH
Q 009256 220 LSEAREVLK---------LARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHVF 286 (539)
Q Consensus 220 ~~~~~~~~~---------~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~---s~~~~~~~~af 286 (539)
..+..+.+. ++...++ -......+...+|+.++.+...+++++++.|......++. ++|++||+++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 111111110 1222222 2223445778889999999888999999999888888877 99999999999
Q ss_pred H-hh-hhccCCC
Q 009256 287 F-AQ-RATSKVP 296 (539)
Q Consensus 287 ~-~k-r~~~~~~ 296 (539)
+ +| |+|++.+
T Consensus 327 lidK~r~P~w~~ 338 (379)
T PLN02874 327 VIDKDNAPKWNP 338 (379)
T ss_pred EEcCCCCCCCCC
Confidence 7 88 8888765
No 72
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=7.7e-48 Score=408.89 Aligned_cols=256 Identities=15% Similarity=0.146 Sum_probs=221.9
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEecCCC-CcccCC
Q 009256 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF 65 (539)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~~~~~~~-d~~v~~vvl~g~g~-~F~aG~ 65 (539)
|+++.++++ +++|++||||||+ + |+||.+|+.+|.++++.++. |+++|+|||||+|+ +||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 455666553 5889999999995 5 69999999999999999986 79999999999994 999999
Q ss_pred CchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc-Cccccch-hHhhhccCEEEee-------CCceEeCCcc
Q 009256 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL 136 (539)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~-G~a~GgG-~~lal~~D~~ia~-------~~a~f~~pe~ 136 (539)
|++.+.. .............+.++ ++|.++||||||+|| |+|+||| ++|+|+||+|||+ ++++|++||+
T Consensus 339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~ 416 (550)
T PRK08184 339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL 416 (550)
T ss_pred Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence 9874321 11100011122334456 679999999999997 9999999 9999999999999 9999999999
Q ss_pred cCCCCCCcchhhccccc-cCHHHHHHH--HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc
Q 009256 137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (539)
Q Consensus 137 ~~Gl~p~~g~~~~l~r~-vG~~~a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (539)
++|++|++|++++|+|+ +|.++|+++ ++||++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~---- 492 (550)
T PRK08184 417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT---- 492 (550)
T ss_pred cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence 99999999999999998 799999997 58999999999999999999999999999999999999999986543
Q ss_pred ccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhH-HHHHHHHHHHHhCCHHHHh---HHHHHHhh
Q 009256 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (539)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~e~~~~~~~~~s~~~~~---~~~af~~k 289 (539)
.+|+.++.+...+++++ +..|.+.|..+++|+|++| ++++|+||
T Consensus 493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 540 (550)
T PRK08184 493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG 540 (550)
T ss_pred --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence 45778888888999999 9999999999999999999 99999999
Q ss_pred hhccCCC
Q 009256 290 RATSKVP 296 (539)
Q Consensus 290 r~~~~~~ 296 (539)
|+|++..
T Consensus 541 r~~~f~~ 547 (550)
T PRK08184 541 QKAQFDW 547 (550)
T ss_pred CCCCCCC
Confidence 9998643
No 73
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1e-47 Score=406.30 Aligned_cols=254 Identities=16% Similarity=0.133 Sum_probs=220.9
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEecCCCC-cccCC
Q 009256 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF 65 (539)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~~~~~~-~d~~v~~vvl~g~g~~-F~aG~ 65 (539)
|.+|.+..+ +++|++||||||+ . |+||.+|+.+|.++++.++ +|+++|+|||||.|+. ||+|+
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 345555443 6899999999995 7 9999999999999999998 4599999999999987 99999
Q ss_pred CchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE-cCccccch-hHhhhccCEEEe-------eCCceEeCCcc
Q 009256 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL 136 (539)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav-~G~a~GgG-~~lal~~D~~ia-------~~~a~f~~pe~ 136 (539)
|++.+... ............++++ .+|.++||||||+| ||+|+||| ++|+++||+||+ +++++|++||+
T Consensus 335 Dl~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 335 DALLEAHK-DHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred Cccccccc-cchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence 99843211 1100111112233456 67999999999999 89999999 999999999999 89999999999
Q ss_pred cCCCCCCcchhhcccccc-CHHHH--HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc
Q 009256 137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (539)
Q Consensus 137 ~~Gl~p~~g~~~~l~r~v-G~~~a--~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (539)
++|++|++|++++|+|++ |.++| +++++||++++|+||++||||++|+|++++++++.+++++|++.||.+++
T Consensus 413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---- 488 (546)
T TIGR03222 413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT---- 488 (546)
T ss_pred ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence 999999999999999998 99999 55999999999999999999999999999999999999999999986554
Q ss_pred ccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhH-HHHHHHHHHHHhCCHHHHh---HHHHHHhh
Q 009256 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (539)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~e~~~~~~~~~s~~~~~---~~~af~~k 289 (539)
.+|+.++.....+++.+ +..|...|..++.|+|++| ++++|+||
T Consensus 489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 536 (546)
T TIGR03222 489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG 536 (546)
T ss_pred --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence 34678888888999999 9999999999999999999 99999999
Q ss_pred hhccC
Q 009256 290 RATSK 294 (539)
Q Consensus 290 r~~~~ 294 (539)
|+|++
T Consensus 537 r~p~f 541 (546)
T TIGR03222 537 KKAQF 541 (546)
T ss_pred CCCCC
Confidence 99875
No 74
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-48 Score=347.10 Aligned_cols=246 Identities=29% Similarity=0.460 Sum_probs=222.9
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
+.||.+|-+||| +.|+++.-|+++|.++++++..|+.+|+|+|++. +..||+|+||+|...++..+ +..+....+.+
T Consensus 38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~E-v~~fV~~lR~~ 116 (291)
T KOG1679|consen 38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSE-VTRFVNGLRGL 116 (291)
T ss_pred CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHH-HHHHHHHHHHH
Confidence 568999999999 5799999999999999999999999999999764 68899999999998775443 44555666677
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~ 169 (539)
+ ..|+++|.||||++.|.|+|||+||+|+||+|+|+++++||++|.+++++|+.||||||||.+|...|+|+++|++.+
T Consensus 117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl 195 (291)
T KOG1679|consen 117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL 195 (291)
T ss_pred H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence 7 669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCcc----hHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHH
Q 009256 170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (539)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (539)
++.||..+||||+||... ...+.+.++|++|.-+.|.++ +
T Consensus 196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiav------------------------------------r 239 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAV------------------------------------R 239 (291)
T ss_pred cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhh------------------------------------h
Confidence 999999999999999765 566778888888877766443 3
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|.+|+.+...++..++..|..++.+...+.|--|++.+|.|||+|...
T Consensus 240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~ 289 (291)
T KOG1679|consen 240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK 289 (291)
T ss_pred HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence 56789999999999999999999999999999999999999999998753
No 75
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.1e-46 Score=372.43 Aligned_cols=235 Identities=34% Similarity=0.523 Sum_probs=226.0
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 305 ~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.+++++|+|||+|.||.+||.+++.+|++|++||++++.++++.+++.+.+++++++|.++..+....++++++++++++
T Consensus 2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhC-CCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~-~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~ 463 (539)
+++||+||||+||+.++|+.+|+++.+++ ++++|++||||+++++.++....+|+|++|+|||+|++.++++|++++..
T Consensus 82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~ 161 (286)
T PRK07819 82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLV 161 (286)
T ss_pred hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHH-HcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 464 TSAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 464 t~~e~~~~~~~l~~-~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
|++++++++.+++. .+|+.|++++|.|||++||++.++++|+++++++|+ +++|||+++ .++|||+|||+++|.++
T Consensus 162 T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~G 240 (286)
T PRK07819 162 TSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVG 240 (286)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhc
Confidence 99999999999988 599999999999999999999999999999999997 999999999 78999999999999764
No 76
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.4e-46 Score=384.76 Aligned_cols=250 Identities=21% Similarity=0.316 Sum_probs=211.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc---
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--- 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~--- 79 (539)
..|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.........
T Consensus 37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4578888 7899999999996 6999999999999999999999999999999999999999999998643211111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.....+++ .+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ++
T Consensus 116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a 193 (401)
T PLN02157 116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG 193 (401)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence 11111122344 56899999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|++||++++|+||+++||||++||++++ +++.+++.+++..+|.+++
T Consensus 194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~------------------------------ 242 (401)
T PLN02157 194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVE------------------------------ 242 (401)
T ss_pred HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHH------------------------------
Confidence 999999999999999999999999999998 6777999999887764332
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHH---HhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF---FAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af---~~kr~~~~ 294 (539)
.+|+.++.. ..+....+..|...+..++.++|.+|++.+| .+||++.+
T Consensus 243 ------~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~w 293 (401)
T PLN02157 243 ------SCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDTW 293 (401)
T ss_pred ------HHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchHH
Confidence 334455443 2345677888899999999999999999999 66666554
No 77
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.5e-46 Score=372.53 Aligned_cols=230 Identities=23% Similarity=0.308 Sum_probs=213.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+.+++|+|||+|.||++||..|+.+|++|++||++++.++.+.+.+.+.+..+.+.+. ... ...+++++++++ ++
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-APG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Chh---hHHhhceecCCHHHH
Confidence 4578999999999999999999999999999999999999988888888888887763 322 233678888888 67
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++||+||||+||+.++|+.+|+++.+++++++||.||||++++++++..+.+|+|++|+||||||+.+++|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCC---cchhhccccC
Q 009256 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQEGGCW 538 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~---~Gpf~~~d~~ 538 (539)
++++++++..|++.+|+.||++ +|.|||++||++.++++||++++++|+ +++|||++| .++|+| +|||+++|..
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 799999999999999999999999996 999999999 699997 9999999975
Q ss_pred C
Q 009256 539 S 539 (539)
Q Consensus 539 ~ 539 (539)
+
T Consensus 241 G 241 (321)
T PRK07066 241 G 241 (321)
T ss_pred C
Confidence 3
No 78
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-47 Score=344.48 Aligned_cols=234 Identities=32% Similarity=0.547 Sum_probs=221.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHH-----HHHhhcccccC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-----NNALKMLKGVL 380 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~ 380 (539)
..++.|+|||+|.||+.||...+..|++|+++|.|+..+.++.+.|.+.+....+++..+.... +..+.++..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 4578899999999999999999999999999999999999999999999888888877664443 66778999999
Q ss_pred Cc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee
Q 009256 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 459 (539)
Q Consensus 381 ~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~ 459 (539)
+. ++++++|+|||++-|+.++|+.+|++|...+++++|+++|||++.+++++..+++|.||.|+|||||+..++++|++
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 98 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhcccc
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGC 537 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~ 537 (539)
.++.|++|+++.+..|.+.+|+.+|-++|.|||++||++.+|++||+++++.|. +.+|||.+| -|.||||||||++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 999999999 799999999999997
Q ss_pred CC
Q 009256 538 WS 539 (539)
Q Consensus 538 ~~ 539 (539)
++
T Consensus 249 vG 250 (298)
T KOG2304|consen 249 VG 250 (298)
T ss_pred hh
Confidence 53
No 79
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.1e-46 Score=358.71 Aligned_cols=205 Identities=29% Similarity=0.460 Sum_probs=183.1
Q ss_pred CCcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 3 APRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 3 ~~~v~~~~~----~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
+++|.++.. +++|++||||||+.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~- 80 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQE- 80 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhh-
Confidence 356666662 478999999999889999999999999999999999999999999999999999999876432211
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
........++++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 81 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~ 159 (222)
T PRK05869 81 ADTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSR 159 (222)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHH
Confidence 111223344566 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
|++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~ 210 (222)
T PRK05869 160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA 210 (222)
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999886543
No 80
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.4e-46 Score=369.02 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=203.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC---
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--- 76 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~--- 76 (539)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence 8999999999 8999999999996 6999999999999999999999999999999999999999999987421110
Q ss_pred --------------Cccc-cc---chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccC
Q 009256 77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (539)
Q Consensus 77 --------------~~~~-~~---~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~ 138 (539)
.... .+ ...+.+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 01 11223444 56899999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccC
Q 009256 139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG 218 (539)
Q Consensus 139 Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~ 218 (539)
|+ |+ .+++++++++|+.+|++|++||++++|+||+++||||+|||++++.+++.+++++|++.|+.+++
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------- 227 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR--------- 227 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence 98 54 45777899999999999999999999999999999999999999999999999999999875443
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHh-CCHH
Q 009256 219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT 278 (539)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~e~~~~~~~~-~s~~ 278 (539)
.+|+.++..... +++++++.|...+...+ ++++
T Consensus 228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 346677766654 68899999998888877 6665
No 81
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=6e-45 Score=371.89 Aligned_cols=292 Identities=20% Similarity=0.285 Sum_probs=230.3
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc-
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV- 79 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~- 79 (539)
+...|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.........
T Consensus 7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 345688888 7999999999997 6999999999999999999999999999999999999999999987532111110
Q ss_pred --cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 80 --SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 80 --~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
..+......+. ..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 01111111233 56899999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcc---cc------------------
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT---DK------------------ 216 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~---~~------------------ 216 (539)
.+++|++||++++|+||+++||||++||++++.+.+.+++ +++..+|..++..++. ..
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 242 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF 242 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999998888 6666655443322111 00
Q ss_pred -cCChHHHHHHHH---------HHHHHHH-HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhC---CHHHHhH
Q 009256 217 -LGSLSEAREVLK---------LARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL 282 (539)
Q Consensus 217 -~~~~~~~~~~~~---------~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~---s~~~~~~ 282 (539)
.+++.+..+.++ +++...+ -......+...+.+.++++...++.+.+..|...-..++. ++||.||
T Consensus 243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG 322 (381)
T PLN02988 243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG 322 (381)
T ss_pred CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 012222222222 1222122 2233444667888999999999999999999999999998 6999999
Q ss_pred HHHHHh-h-hhccCCCC
Q 009256 283 VHVFFA-Q-RATSKVPN 297 (539)
Q Consensus 283 ~~af~~-k-r~~~~~~~ 297 (539)
|+|-+- | +.|+|.|.
T Consensus 323 VRA~LiDKd~~P~W~p~ 339 (381)
T PLN02988 323 CRAILVDKDKNPKWEPR 339 (381)
T ss_pred HHHHhcCCCCCCCCCCC
Confidence 999865 4 56777663
No 82
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.1e-44 Score=355.52 Aligned_cols=244 Identities=23% Similarity=0.261 Sum_probs=197.1
Q ss_pred EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEecC-CCCcccCCCchhhhhhcCCCc
Q 009256 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~-----d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|.++. +++|++|||| | +.|+||.+|+.+|.++++++++ |+++|+|||||. |++||+|+|++++........
T Consensus 19 i~~e~-~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 19 VYYEE-ERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEc-cCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 34454 6899999996 7 5799999999999999999998 899999999999 799999999998753211111
Q ss_pred ccccchH---HHHHHHHHHH---hCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhcccc
Q 009256 79 VSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (539)
Q Consensus 79 ~~~~~~~---~~~~~~~~i~---~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 152 (539)
...+... ..+.+ .++. ++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 97 ~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~ 175 (287)
T PRK08788 97 RDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLAR 175 (287)
T ss_pred hHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHH
Confidence 1111111 11222 2233 799999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHH
Q 009256 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (539)
Q Consensus 153 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (539)
++|+.+|++|++||++++|+||++|||||+++|++++.+++.+++++|+.. |.+..
T Consensus 176 ~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~----------------------- 231 (287)
T PRK08788 176 RVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR----------------------- 231 (287)
T ss_pred HhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999976 32221
Q ss_pred HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHH-HHhHHHHHHhh
Q 009256 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDT-SRGLVHVFFAQ 289 (539)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~-~~~~~~af~~k 289 (539)
+.|+..+.....++++.++.|...+..++++.+ .++-|..|..-
T Consensus 232 -------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (287)
T PRK08788 232 -------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVRA 276 (287)
T ss_pred -------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 122333333445678888888888777666665 46777777643
No 83
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.6e-45 Score=350.44 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=179.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
|+ +.+.++. +++|++||||||+.|++|.+|+++|.++++.++ +++|+||+||.|++||+|+|++++... .....
T Consensus 1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~ 74 (229)
T PRK06213 1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI 74 (229)
T ss_pred Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence 54 5688888 789999999999889999999999999999988 567999999999999999999987542 11111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.+.....+++ +++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+++++.++++++|..++
T Consensus 75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 2223344566 6799999999999999999999999999999999999 9999999999999888888889999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
++++++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 203 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHA 203 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999876543
No 84
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-44 Score=360.43 Aligned_cols=203 Identities=26% Similarity=0.344 Sum_probs=176.7
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC---
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--- 77 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~--- 77 (539)
+++++.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~ 86 (302)
T PRK08272 8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG 86 (302)
T ss_pred CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence 467899999 7899999999996 69999999999999999999999999999999999999999999886432110
Q ss_pred c----------------cc-----ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcc
Q 009256 78 D----------------VS-----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL 136 (539)
Q Consensus 78 ~----------------~~-----~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~ 136 (539)
. .. .+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 0 00 0011233455 568999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 137 TLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 137 ~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
++|.+|+. .++++++|.++|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~ 235 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA 235 (302)
T ss_pred hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98666643 35788999999999999999999999999999999999999999999999999999987654
No 85
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1e-43 Score=376.78 Aligned_cols=233 Identities=36% Similarity=0.554 Sum_probs=224.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+++||+|||+|.||.+||.+++++||+|++||++++.++++.+++++.++.++++|.++.++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||||+||+.++|+.+|+++..++++++||+||||++++++++..+.+|+|++|+|||+|++.++++|+++++.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++.++++.+|+.|+++++.+||++||++.++++|++.++++| +++++||+++ .++|||||||+++|.++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~G 238 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIG 238 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999997 6999999999 67999999999999764
No 86
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=3e-43 Score=359.80 Aligned_cols=286 Identities=22% Similarity=0.255 Sum_probs=224.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC---cc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---~~ 79 (539)
+.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++....... ..
T Consensus 42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4577888 7899999999996 69999999999999999999999999999999999999999999986532111 11
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.....++. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g 198 (407)
T PLN02851 121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG 198 (407)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence 11222233444 56889999999999999999999999999999999999999999999999999999999999997 59
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhh-------------------------hhcc
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRS-------------------------LHRT 214 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~-------------------------~~~~ 214 (539)
++|++||++++|+||+++||+|++||.+++ +.+.+.+.++...++..+.. ++..
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999988 56666666554443322221 1111
Q ss_pred cccCChHHHHHHHH---------HHHHHHH-HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh---CCHHHHh
Q 009256 215 DKLGSLSEAREVLK---------LARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRG 281 (539)
Q Consensus 215 ~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~---~s~~~~~ 281 (539)
+++.+..+.++ +++...+ -......+...+.+.++++...++++.++.|...-..++ .++|+.|
T Consensus 278 ---~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~E 354 (407)
T PLN02851 278 ---DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCE 354 (407)
T ss_pred ---CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 12222222222 2222222 223444566778899999999999999999999999887 4899999
Q ss_pred HHHHHHh--hhhccCCC
Q 009256 282 LVHVFFA--QRATSKVP 296 (539)
Q Consensus 282 ~~~af~~--kr~~~~~~ 296 (539)
||+|-+- .++|+|.|
T Consensus 355 GVRA~LIDKd~~P~W~p 371 (407)
T PLN02851 355 GVRARLVDKDFAPKWDP 371 (407)
T ss_pred HHHHHhcCCCCCCCCCC
Confidence 9999875 34677765
No 87
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.8e-43 Score=373.67 Aligned_cols=235 Identities=34% Similarity=0.526 Sum_probs=226.5
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 305 ~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.+.+++|+|||+|.||.+||.+++++|++|++||++++.++++.+++++.+++++++|.++.++.+..++++++++++++
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++||+||||+||+.++|+.+|+++...+++++|++||||++++++++..+.+|+|++|+|||+|++.++++|++++..|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++++.++++.+|+.|+++++.+||++||++.++++|++.++++| +++++||+++ .++|||||||+++|.++
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~G 240 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIG 240 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999997 5999999999 67999999999999764
No 88
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=9.7e-43 Score=345.39 Aligned_cols=191 Identities=25% Similarity=0.354 Sum_probs=170.1
Q ss_pred EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcC--CCcccccchHHHHHH
Q 009256 15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG--AGDVSLMPDVSVELV 90 (539)
Q Consensus 15 v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~~ 90 (539)
+++||||||+ +|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.+... ......+....++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 5669999996 6999999999999999999999999999999999 69999999998865321 111112223334555
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
+++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++++|++++
T Consensus 118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCcchH------------HHHHHHHHHHHHhcCch
Q 009256 171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP 206 (539)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~la~~~~~ 206 (539)
|+||+++||||+|||+.++ ++.+.++++.+...++.
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 244 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA 244 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence 9999999999999999998 88888999888888765
No 89
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=9.3e-44 Score=320.24 Aligned_cols=256 Identities=24% Similarity=0.342 Sum_probs=221.9
Q ss_pred CCcEEEEE--ecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC----
Q 009256 3 APRVTMEV--GNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---- 75 (539)
Q Consensus 3 ~~~v~~~~--~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~---- 75 (539)
|+.+.+.+ .+..|.++.|||| +.|++|..|+.|+.++++.+.+||++|+|||+|+|++||+|+|+..+.....
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 55555553 2457999999999 5799999999999999999999999999999999999999999887754311
Q ss_pred CCcc-------cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhh
Q 009256 76 AGDV-------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (539)
Q Consensus 76 ~~~~-------~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 148 (539)
..+. ..+...+++.+ ..|++||||||++|||+|+|||+.|.-+||+|+|+++|.|..-|+.+|+..+.|..+
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 1111 12233345556 679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC-HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHH
Q 009256 149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 226 (539)
Q Consensus 149 ~l~r~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (539)
|||..|| .+.++++.+|++.++|.||++.|||++|+|+ +++.+.+..+|+.|+..+|.+++
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq----------------- 239 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ----------------- 239 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence 9999999 8999999999999999999999999999976 67899999999999999986553
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.+.+++.+++|..-...-...+.|+|..+.+.+-++|+++..+
T Consensus 240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tf 289 (292)
T KOG1681|consen 240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTF 289 (292)
T ss_pred -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 34678888888999999988877777788899999999999998876644
No 90
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.6e-42 Score=344.88 Aligned_cols=233 Identities=29% Similarity=0.394 Sum_probs=218.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHH-HHHHhhcccccCCc-cC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDY-SE 384 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~ 384 (539)
.++||+|||+|.||.+||..++.+|++|++||++++.++++.+.+.+.+..+.+.+.++..+ .+...++++.++++ ++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 36799999999999999999999999999999999999999888888888888888887766 66667888888888 57
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++||+||+|+|++.++|+.+++++.++++++++|++++|++++++++..+.+|+|++|+||++|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++++.++++.+|+.|+++ +|.|||++||++.++++||+.++++|+ +++|||+++ .++|+|+|||+++|..+
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~G 239 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVG 239 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhc
Confidence 9999999999999999999998 599999999999999999999999996 999999999 89999999999999864
No 91
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.6e-42 Score=341.94 Aligned_cols=233 Identities=36% Similarity=0.595 Sum_probs=222.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.|+||+|||+|.||.+||..++++|++|++||++++.++...+++++.++...+.|.++.........+++++++++.++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 36799999999999999999999999999999999999999888999999999999888888777778888888887799
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++..+|+.+++++.++++++++|+|++|+++++.++..+.+|+|++++||++|++.++++|+++++.|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
+.++.+.++++.+|+.|++++|.|||+.||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.++
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~G 236 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIG 236 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999997 999999999 69999999999999763
No 92
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.5e-42 Score=342.41 Aligned_cols=233 Identities=33% Similarity=0.569 Sum_probs=217.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHH---HHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
++++|+|||+|.||.+||..++++|++|++||++++.++.+.+++++ .+...++.+.++..+.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 46899999999999999999999999999999999999988777655 356677788888887777778888888877
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~ 463 (539)
++++||+||+|+|++.++|+.+++++.++++++++++|++|++++++++..+.+|+|++|+||++|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
|++++++++.++++.+|+.|++++|.|||++||++.++++||+.++++|+ +++|||+++ .++|+|+|||+++|.++
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~G 239 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIG 239 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999997 999999999 79999999999999763
No 93
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=9.7e-42 Score=341.10 Aligned_cols=232 Identities=33% Similarity=0.493 Sum_probs=219.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
+++|+|||+|.||.+||..|+++|++|++||++++.++.+.+++...+...++.+.++..+.+....+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999988888777888888888888888788888888888 6899
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++.++|+.+++++.+++++++++++++|++++++++..+.++.+++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
+++++++++++.+|+.|++++|.|||++||+++++++||+.++++|+ +++|||.++ .++|||+|||+++|.++
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~G 235 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVG 235 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999996 999999999 69999999999999864
No 94
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=5.9e-42 Score=331.70 Aligned_cols=199 Identities=24% Similarity=0.294 Sum_probs=170.4
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCcccCCCchhhhhhcCCC-cccccc
Q 009256 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAG-DVSLMP 83 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~-~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 83 (539)
++++. +++|++|+||||+.|+||.+|+++|.+++++++.|++++ +||++|.|++||+|+|++++....... ....+.
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 56777 789999999999889999999999999999999998875 777799999999999999875321111 111122
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEee-CCceEeCCcccCCCCCCcchhhccccccCHHHH-HH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA-IE 161 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a-~~ 161 (539)
..+.+++ .++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++++|++++|..++ ++
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~ 159 (239)
T PLN02267 81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRD 159 (239)
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHH
Confidence 3344566 67999999999999999999999999999999998 568999999999997334458899999999999 69
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCch
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKP 206 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~ 206 (539)
++++|++++|+||+++||||+|+|+ +++.+++.++|++|++.+++
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~ 205 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWN 205 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCc
Confidence 9999999999999999999999985 68999999999999998653
No 95
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-42 Score=308.73 Aligned_cols=252 Identities=29% Similarity=0.394 Sum_probs=205.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--C-CCcccCCCchhhhhh---cC
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG 75 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~--g-~~F~aG~Dl~~~~~~---~~ 75 (539)
|..|.++...++|+.||||||+ +|++.+..+.||.++|..+..|++|.||+|||. | ++||+|+|-+-.... ..
T Consensus 17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 5668888833899999999996 799999999999999999999999999999985 3 689999998765431 11
Q ss_pred CCcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
++....+. ..++. +.|+.+||||||.|+|+|+|||-.|-+.||+.||+++|+|++...++|-+-++.|+..|.|.||
T Consensus 97 d~~~~rLn--vLdlQ-rlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 97 DDGIPRLN--VLDLQ-RLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CccCcccc--hhhHH-HHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 11111111 22444 6789999999999999999999999999999999999999999999999988888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
.++|+|+.+.++.++|+||+++||||.|||.++|++++.+|++++.+.||.+++.+
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~L------------------------ 229 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRML------------------------ 229 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998765532
Q ss_pred HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
|.+++.. ..++.-.-+.-..+-...+.|+|.+||..||+|||+|..
T Consensus 230 ------------K~Afnad-~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 230 ------------KAAFNAD-CDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred ------------HHHhcCC-CchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 2233221 111111111222333446789999999999999999874
No 96
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.9e-41 Score=336.26 Aligned_cols=233 Identities=33% Similarity=0.505 Sum_probs=220.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.++||+|||+|.||.+||..|+++|++|++||++++.++.+.+++...+..+++.+.++..+......+++.++++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 46799999999999999999999999999999999999998888888888888889888887777778888888888899
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++.++|+.+++++.+.++++++|+|++|+++++.++..+.+|++++|+||++|++..+++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++.++++.+|+.+++++|.|||++||++.++++|++.++++|+ ++++||+++ .++|||+|||+++|.++
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~G 237 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIG 237 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998 999999999 69999999999999864
No 97
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=8.5e-41 Score=335.59 Aligned_cols=233 Identities=33% Similarity=0.558 Sum_probs=222.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.++||+|||+|.||.+||..|+.+|++|++||++++.++...+++++.++.+++.|.++.++....+++++++++.++++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 46799999999999999999999999999999999999999999999999999999999888888888888888888899
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+||++++|+.+++++.++++++++|+|++|++++++++..+.++.+++|+||++||+.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++.++++++.+|+.++++++.+||++||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.++
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~G 237 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIG 237 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999996 999999999 79999999999999764
No 98
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.2e-40 Score=304.75 Aligned_cols=253 Identities=22% Similarity=0.273 Sum_probs=223.1
Q ss_pred CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|.+..+.++. .|++.+|.+| ||+ .|+++.+++.++..+++.+.+|+++..++++|.|++||+|.|+..+......+.
T Consensus 4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence 5567788888 8999999999 996 699999999999999999999999999999999999999999998876443321
Q ss_pred cc---ccchHHH--HHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccc
Q 009256 79 VS---LMPDVSV--ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (539)
Q Consensus 79 ~~---~~~~~~~--~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ 153 (539)
.. ....... ..+.+.+.++|||+||.|||+|+|.|..+.-.||+++|+|+++|..|+.++|.+|++++++.||++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 11 1111111 123477899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHH
Q 009256 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (539)
Q Consensus 154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (539)
+|...|.||++.|++++|+||.+.|||++|+|++++.+.++.-++++++.+|..++
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------ 218 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------ 218 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999999886554
Q ss_pred HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhh
Q 009256 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (539)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr 290 (539)
.+|++++......+..+.+.|.......|.|+|..+.+.+|+.|.
T Consensus 219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 345667777777788899999999999999999999999998764
No 99
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.1e-38 Score=318.10 Aligned_cols=221 Identities=29% Similarity=0.381 Sum_probs=209.3
Q ss_pred CcHHHHHHHHHCCCeEEEEeCChH-------HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--c-cCCCCc
Q 009256 319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV 388 (539)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~-~~~~~a 388 (539)
||.+||..++.+|++|++||++++ .++++.+++.+.++.++++|.++.++.+..+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 467788889999999999999999999999999998765 3 678999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHH
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~ 468 (539)
|+||||+||+.++|+.+|+++.+.+++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCC---cchhhccccCC
Q 009256 469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQEGGCWS 539 (539)
Q Consensus 469 ~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~---~Gpf~~~d~~~ 539 (539)
+++++++++.+|+.|++++|.+||++||++.++++|++.++++| +++++||+++ .++|+| +|||+++|.++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~G 236 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGG 236 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhh
Confidence 99999999999999999999999999999999999999999997 5999999999 699999 69999999753
No 100
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.1e-38 Score=337.67 Aligned_cols=201 Identities=22% Similarity=0.326 Sum_probs=174.6
Q ss_pred CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEecC-CCCcccCCCchh
Q 009256 3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV 69 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~~~~~~-~d~~v~~vvl~g~-g~~F~aG~Dl~~ 69 (539)
++++.+++ +++|++|||||| +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+++
T Consensus 10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~ 88 (546)
T TIGR03222 10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM 88 (546)
T ss_pred CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence 45788888 789999999996 459999999999999999999 7899999999987 689999999998
Q ss_pred hhhhcCCCcccccchH----HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCccc-CCCCC
Q 009256 70 FQKVHGAGDVSLMPDV----SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP 142 (539)
Q Consensus 70 ~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~p 142 (539)
+....... ...+... ...+. +.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~i~-~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P 166 (546)
T TIGR03222 89 LGLSTHAW-KVNFCKFTNETRNGIE-DSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLP 166 (546)
T ss_pred Hhccccch-hhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCC
Confidence 75321111 1111111 11233 5578999999999999999999999999999999986 799999997 99999
Q ss_pred Ccchhhccc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCch
Q 009256 143 GFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (539)
Q Consensus 143 ~~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (539)
++|++++++ +++|..+|++|+++|++++|+||++|||||+|||++++++++.++|++|++.||.
T Consensus 167 ~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 167 GTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred ccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999997 7999999999999999999999999999999999999999999999999998863
No 101
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2e-38 Score=337.02 Aligned_cols=204 Identities=22% Similarity=0.313 Sum_probs=176.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEecC-CCCcccCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDI 67 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~~~~~~-~d~~v~~vvl~g~-g~~F~aG~Dl 67 (539)
|+++++.++. +++|++|||||| +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 5678899999 799999999954 459999999999999999998 7899999999997 4899999999
Q ss_pred hhhhhhcCCCcccccchHH---HHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCccc-CCCC
Q 009256 68 NVFQKVHGAGDVSLMPDVS---VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI 141 (539)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~ 141 (539)
+++....... ...+.... ...+.+.+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875421111 01111111 112225678999999999999999999999999999999987 899999997 9999
Q ss_pred CCcchhhccc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCch
Q 009256 142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (539)
Q Consensus 142 p~~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (539)
|++|++++|+ +++|..+|+++++||++++|+||+++||||+|||++++.+++.+++++|+..||.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998 7899999999999999999999999999999999999999999999999999864
No 102
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=4.2e-38 Score=297.26 Aligned_cols=192 Identities=44% Similarity=0.704 Sum_probs=174.9
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc-ccccc
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (539)
+.++. +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||||.|+.||+|.|++++........ ...+.
T Consensus 1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~ 79 (195)
T cd06558 1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI 79 (195)
T ss_pred CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence 35677 6899999999997 799999999999999999999999999999999999999999999876543221 22344
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (539)
....+++ +++.++|||+||++||+|+|+|++++++||+||++++++|++||+++|++|+.|++++|++++|.+++++++
T Consensus 80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 5556667 779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHH
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 199 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 199 (539)
++|++++++||+++||||++++.+++.+++.+++++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999876
No 103
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=7.1e-38 Score=277.29 Aligned_cols=245 Identities=23% Similarity=0.349 Sum_probs=208.5
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+++|-.|+||+|+ .|.++..|+.+|.+.+....+..++|+|||+..|+.||+|.||+|+...+..+.....+....+++
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm 118 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM 118 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence 6899999999996 699999999999999998888889999999999999999999999987654443344455556677
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
+-|+++|+||||-|||+|..+||.|...||++||+++++|..|..++|++-..-|. -|.|.+++..|.+|++||.+|+
T Consensus 119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCc
Confidence 56999999999999999999999999999999999999999999999997544443 3889999999999999999999
Q ss_pred HHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 009256 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 250 (539)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 250 (539)
++||+.-|||++|||++++..++.+++.+|-..+...+. ..| +-
T Consensus 197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------lgk------------------------~f 240 (287)
T KOG1682|consen 197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------LGK------------------------EF 240 (287)
T ss_pred hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------HHH------------------------HH
Confidence 999999999999999999999999999999887754321 122 22
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 251 ~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+....++-.+++..-.+.+.+.++-.|.+|||.+|++||.|.|
T Consensus 241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 22233344456666777778888999999999999999998875
No 104
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5e-36 Score=302.46 Aligned_cols=231 Identities=26% Similarity=0.363 Sum_probs=216.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
|++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..+..+.+.|.++........++++.++++ ++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 568999999999999999999999999999999999999998888888888899988877777777888888888 5789
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++.++++.+++++.+.+++++++.|++++.++..++..+.++.++++.||++|++..+++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999898999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCC---cchhhccccC
Q 009256 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQEGGCW 538 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~---~Gpf~~~d~~ 538 (539)
+++++++++++.+|+.++++ ++.+||++||++.++++||+.++++| +|+++||+++ .++|++ +|||++.|.+
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~ 239 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLN 239 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcc
Confidence 99999999999999999999 58999999999999999999999996 6999999999 789987 8999999975
No 105
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=1.6e-35 Score=274.08 Aligned_cols=180 Identities=40% Similarity=0.620 Sum_probs=161.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++.+++++.+++++....+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999997777999
Q ss_pred EEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHH
Q 009256 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469 (539)
Q Consensus 390 lVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~ 469 (539)
+|||++||+.++|+++|++|.+++++++||+||||++++++++..+.+|+|++|+|||+||+.++++||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCceeEEEcCc
Q 009256 470 LDLMTVGKIIKKVPVVVGNC 489 (539)
Q Consensus 470 ~~~~~l~~~lg~~~v~v~~~ 489 (539)
+++..|++.+|+.|++++|.
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999873
No 106
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.3e-33 Score=285.97 Aligned_cols=228 Identities=32% Similarity=0.522 Sum_probs=199.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.+++|+|||+|.||.+||..|+++|++|++||++++.++.+.+.+........+.+. .....++++.++++ +.+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988887655433322222111 00223456666777 568
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCc
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~ 465 (539)
++||+||+|+|++.+.++.+++++.+.++++++|+|+++++++++++..+.++.+++++||++|++.++++++++++.|+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCceeEEEc-CcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCC---cchhhccccCC
Q 009256 466 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQEGGCWS 539 (539)
Q Consensus 466 ~e~~~~~~~l~~~lg~~~v~v~-~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~---~Gpf~~~d~~~ 539 (539)
++.++.+.++++.+|+.+++++ +.+||++||++.++++|++.++++| ++++++|+++ .++||| +|||+++|..+
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999995 8899999999999999999999996 6999999999 799998 79999999764
No 107
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=5e-34 Score=274.57 Aligned_cols=290 Identities=23% Similarity=0.301 Sum_probs=224.4
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCCchhhhhhcCCCc---
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGD--- 78 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~--- 78 (539)
..|.++. .+....||||||+ .||||.+|...+...+..++.++.+++||+.|. |++||+|+|++.......+..
T Consensus 38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 4578888 7899999999997 699999999999999999999999999999887 689999999986654332222
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...++..-..+. ..|.++.||.||.++|..+|||++|+.+.-||||+|++.|.+||+.+|++|+.|++++|+|+.| ..
T Consensus 117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 222333333444 5689999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchh-------------------------hhhhhc
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW-------------------------IRSLHR 213 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~-------------------------~~~~~~ 213 (539)
..++.|||+++++.+|+..||.++-||.+++..--.++...+...|... +..++-
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 9999999999999999999999999998776443334432222222111 112222
Q ss_pred ccccCChHHHHHHHH-------HHHHHHHH-hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHH
Q 009256 214 TDKLGSLSEAREVLK-------LARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV 285 (539)
Q Consensus 214 ~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~a 285 (539)
.+....+.++++.++ ++..+.+. ......+.+.+.+.+.++...++++.+-+|.+.-...+.+.||.||++|
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA 354 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA 354 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 222222333222222 23333232 2245557788899999999999999999999999999999999999999
Q ss_pred HHh--hhhccCCC
Q 009256 286 FFA--QRATSKVP 296 (539)
Q Consensus 286 f~~--kr~~~~~~ 296 (539)
-|- .++|+|.|
T Consensus 355 ~LIDKd~~PKW~p 367 (401)
T KOG1684|consen 355 VLIDKDQNPKWDP 367 (401)
T ss_pred eeecCCcCCCCCC
Confidence 763 35677755
No 108
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=1.5e-33 Score=300.87 Aligned_cols=227 Identities=26% Similarity=0.331 Sum_probs=196.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++||+|||+|+||++||..|+++|++|++||+++++.+.+.+.+....... . .+... .....+++++++++ ++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~-~--~l~~~-~~~~~g~i~~~~~~~ea~~ 79 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY-A--MLTDA-PLPPEGRLTFCASLAEAVA 79 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH-h--hhccc-hhhhhhceEeeCCHHHHhc
Confidence 568999999999999999999999999999999999877644322211111 1 11111 01122456777788 6789
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++.++|+.+++++.++++++++|.|+||+++++.++..+.++.++++.|||+|++.++++|+++++.|++
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCC---cchhhccccC
Q 009256 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQEGGCW 538 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~---~Gpf~~~d~~ 538 (539)
+++++++++++.+|+.++++ ++.+||++||++.++++||+.++++| +++++||+++ .++|++ +|||++.|..
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~ 237 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIA 237 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhc
Confidence 99999999999999999999 59999999999999999999999996 6999999999 687774 8999999864
No 109
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-34 Score=260.23 Aligned_cols=229 Identities=25% Similarity=0.405 Sum_probs=209.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHH-HHHHHhhcccccCCc-cC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVLDY-SE 384 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~ 384 (539)
+..||+|+|.|.+|++||-.|+..||+|.+||+.++++..+.+.+++.+..+-+.|.+... .+++.+..++.++++ +.
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 3579999999999999999999999999999999999999999988888776665433211 244556788999999 78
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++|=.|.||+||++.+|+.+++++.+.+.+.+|+.|+||++.++.....+.+.++++..||.|||+..|++|++|.+.|
T Consensus 82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwT 161 (313)
T KOG2305|consen 82 VKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWT 161 (313)
T ss_pred HhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCC
Confidence 89999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCc---chhhcc
Q 009256 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQEG 535 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~---Gpf~~~ 535 (539)
+|+++++.+.+++.+|..|+.. ++.-||..||+.++++||..++++.|+ +..|+|.+| .|+|.++ ||+|.+
T Consensus 162 sp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~ 238 (313)
T KOG2305|consen 162 SPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETA 238 (313)
T ss_pred ChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhh
Confidence 9999999999999999999987 689999999999999999999999987 999999999 8999864 999876
No 110
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.96 E-value=3.4e-29 Score=243.94 Aligned_cols=220 Identities=40% Similarity=0.634 Sum_probs=212.5
Q ss_pred CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccCC
Q 009256 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 398 (539)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe~ 398 (539)
||++||..+..+|++|+++|.|...++....++...+...+.++.++..+.......+..+.|++.+++||+||+++.+|
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999989889999999999999999999988889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHH
Q 009256 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478 (539)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~ 478 (539)
+++|++++.+|++.+++++|+.+|+|++++..+...+..|++++|+|||.|.+.++++|++.+.+|+..++..+...-..
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEEcCcccchhhcchHHHHHHHHHHHHc-CCCHHHHHHHHHhCCCCcchhhccccC
Q 009256 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQEGGCW 538 (539)
Q Consensus 479 lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~-G~~~~~id~a~~~~g~~~Gpf~~~d~~ 538 (539)
.|+.|++|++++||.+||++..|++++..+..+ |++|.++|..++.+|+|+||+.+.|..
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~ 221 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV 221 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc
Confidence 999999999999999999999999999888888 999999999999999999999999864
No 111
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.85 E-value=1e-20 Score=184.13 Aligned_cols=186 Identities=19% Similarity=0.188 Sum_probs=141.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||.+|.++||+|++|||++++...... ..| .....+. +++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~----------~~G-------------a~~a~s~~eaa~~ 57 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA----------AAG-------------ATVAASPAEAAAE 57 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHH----------HcC-------------CcccCCHHHHHHh
Confidence 37999999999999999999999999999999998433311 112 2333444 78899
Q ss_pred cCEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCC--------CCe
Q 009256 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV--------MPL 455 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~--------~~~ 455 (539)
||+||.|+|++.++...++. .+.+.++++++++++|+.-|.. +++..+.. .|.+|++.|-. +.+
T Consensus 58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCcEEecCccCCchhhhhCce
Confidence 99999999999999888884 5888899999998766544433 34443322 26677766633 344
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCc-ccc---hhhcchHHH----HHHHHHHHHc-CCCHHHHHHHH-Hh
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RS 524 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-~g~---v~nrl~~~~----~~Ea~~l~~~-G~~~~~id~a~-~~ 524 (539)
..++.+ +++.+++++++++.+|+.++++++. .|. ++|+++... +.|++.++++ |++++.+.+++ .+
T Consensus 134 timvGG---~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~ 209 (286)
T COG2084 134 TIMVGG---DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGG 209 (286)
T ss_pred EEEeCC---CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence 455566 8999999999999999999999864 333 558776543 3499999988 99999999999 44
No 112
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.82 E-value=4.4e-20 Score=197.06 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=115.7
Q ss_pred CCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccc
Q 009256 413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (539)
Q Consensus 413 ~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~ 492 (539)
..+++++....++.+.+..+....+|++++|+|||+|++.++++|++++..|++++++.+..+++.+|+.|++++|.+||
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~Gf 417 (507)
T PRK08268 338 SADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGF 417 (507)
T ss_pred ccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCccH
Confidence 45667776666666566666566788999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 493 AVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 493 v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++||++.+++||++.++++|+ +++|||.+| .++|||+|||+|+|.++
T Consensus 418 i~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~G 466 (507)
T PRK08268 418 VAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLG 466 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 999999999999999999997 899999999 79999999999999764
No 113
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.81 E-value=7.3e-20 Score=169.53 Aligned_cols=144 Identities=19% Similarity=0.142 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcCccc
Q 009256 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (539)
Q Consensus 31 ~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~ 110 (539)
-.+.+|.++++.+++|+++|+|||++ ||.|+|+.... ...+.+ +.+.+++|||||++||.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCchh
Confidence 45789999999999999999999997 68898876431 123445 5688899999999999999
Q ss_pred cchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhh--------ccccccC--HHHHHHHHHcCCCCCHHHHHHcCCc
Q 009256 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGLI 180 (539)
Q Consensus 111 GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~r~vG--~~~a~~l~l~g~~~~a~eA~~~Glv 180 (539)
|+|+.|+++||+++++++++|+.+.+..+..+...... .+++..| ....++++..|+.++|+||++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999987766432222121 3444445 8889999999999999999999999
Q ss_pred ceecCcchHHHH
Q 009256 181 DAVVTSEELLKV 192 (539)
Q Consensus 181 ~~vv~~~~l~~~ 192 (539)
|+|.+.+++.+.
T Consensus 164 D~v~~~~e~~~~ 175 (177)
T cd07014 164 DSLGSFDDAVAK 175 (177)
T ss_pred ccCCCHHHHHHH
Confidence 999998887653
No 114
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.78 E-value=1.1e-18 Score=162.94 Aligned_cols=149 Identities=25% Similarity=0.270 Sum_probs=118.5
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-cCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHH
Q 009256 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (539)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (539)
+.|.++. .++..+...+.+.++.+++++ ++.|+|. .. -|+++.. ...++ ++|
T Consensus 2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS-----pGG~v~~----------------~~~i~-~~l 54 (187)
T cd07020 2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELDT-----PGGLLDS----------------TREIV-QAI 54 (187)
T ss_pred EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC-----CCCCHHH----------------HHHHH-HHH
Confidence 5566654 366778889999999998665 7878775 32 2333321 22455 568
Q ss_pred HhCCCcEEEEEc---CccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCc--------------chhhccccccCH-
Q 009256 95 EDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL- 156 (539)
Q Consensus 95 ~~~~~p~iaav~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~l~r~vG~- 156 (539)
..+||||||+|+ |+|+|||+.|+++||+++++++++|+.++...+..+.. +....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999999 99999999999999999999999999999985544432 234578888898
Q ss_pred -HHHHHHHHcCCCCCHHHHHHcCCcceecCcc-hHHH
Q 009256 157 -SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLK 191 (539)
Q Consensus 157 -~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-~l~~ 191 (539)
.++++++++|+.++|+||+++||||+|++++ ++..
T Consensus 135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 7999999999999999999999999999886 5653
No 115
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.77 E-value=4.8e-18 Score=170.43 Aligned_cols=186 Identities=18% Similarity=0.226 Sum_probs=135.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
||+|||+|.||.+||..|+++|++|++||+++++.+.+.+ .|. ...++. +.+++|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~-------------~~~~~~~~~~~~a 56 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA-----------AGA-------------VTAETARQVTEQA 56 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CCC-------------cccCCHHHHHhcC
Confidence 5999999999999999999999999999999988776532 121 112233 668899
Q ss_pred CEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCC--------CCee
Q 009256 389 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV--------MPLL 456 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~--------~~~v 456 (539)
|+||+|+|++..++..++. .+.+.+++++++++.++..+.. ++...+... |.||+++|.. +.+.
T Consensus 57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 9999999988777766553 3667778888887554443332 344444321 4444443322 1233
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcC-ccc---chhhcchHHH----HHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g---~v~nrl~~~~----~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
.++++ +++.+++++++++.+|+.++++++ ..| .++|+++... ++|++.++++ |++++++.+++ .+.+
T Consensus 133 i~~gg---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVGG---DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEecC---CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 34444 789999999999999999999975 555 4778887654 7799999987 89999999999 4443
No 116
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.74 E-value=2.5e-17 Score=165.68 Aligned_cols=189 Identities=17% Similarity=0.209 Sum_probs=136.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
+++|+|||+|.||.++|..|++.|++|++||+++++.+.+.+ .+ ....++. +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA-----------AG-------------AETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CeecCCHHHHHh
Confidence 358999999999999999999999999999999988665422 11 2233444 5578
Q ss_pred CcCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCCC-------Ce
Q 009256 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PL 455 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~~-------~~ 455 (539)
+||+||+|+|++..++..++ ..+.+.+++++++++.++..+.. ++.+.+... |.||.++|..+ ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g~ 133 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDGT 133 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhCc
Confidence 99999999998887766654 34777888899888555444322 444444321 45665555332 22
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC-cccch---hhcchHH----HHHHHHHHHHc-CCCHHHHHHHH-HhC
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 525 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~v---~nrl~~~----~~~Ea~~l~~~-G~~~~~id~a~-~~~ 525 (539)
++++.+ .+++.+++++++++.+|+.++++++ .+|++ +|+++.+ .++|++.++++ |++++++++++ .++
T Consensus 134 l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~ 211 (296)
T PRK11559 134 LSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL 211 (296)
T ss_pred EEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence 334433 2689999999999999999999974 56664 5776554 47899999987 89999999998 444
Q ss_pred C
Q 009256 526 G 526 (539)
Q Consensus 526 g 526 (539)
+
T Consensus 212 ~ 212 (296)
T PRK11559 212 A 212 (296)
T ss_pred c
Confidence 3
No 117
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.74 E-value=4.4e-17 Score=155.54 Aligned_cols=190 Identities=19% Similarity=0.172 Sum_probs=135.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
+.++||+||+|.||.+|+.+|.++||.|++|||+.++.+.+.+. | .+...++ |..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~-----------G-------------a~v~~sPaeVa 89 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEA-----------G-------------ARVANSPAEVA 89 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHh-----------c-------------hhhhCCHHHHH
Confidence 46799999999999999999999999999999999988877442 2 2223333 778
Q ss_pred CCcCEEEEcccCChhHHHHHHHH--HHHhCCCCeEE-EecCCCCCh---HHHhhccCC-CCcEEEeccC---CCCCCCCe
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCIL-ATNTSTIDL---NIVGEKTSS-QDRIIGAHFF---SPAHVMPL 455 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~--l~~~~~~~~ii-~s~ts~~~~---~~i~~~~~~-~~r~vg~h~~---~p~~~~~~ 455 (539)
++||+||.++|+..+++..++.. +.+.++++... +++| ++.+ .++++.+.. .-+++-.+.- .++..+.+
T Consensus 90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmS-Tidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~L 168 (327)
T KOG0409|consen 90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMS-TIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTL 168 (327)
T ss_pred hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEecc-ccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeE
Confidence 99999999999999998888865 44444454433 3333 3333 356655543 2233332211 11234445
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC-ccc---chhhcchHHHH----HHHHHHHHc-CCCHHHHHHHH-Hh
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPYS----QSARLLVSL-GVDVFRIDSAI-RS 524 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g---~v~nrl~~~~~----~Ea~~l~~~-G~~~~~id~a~-~~ 524 (539)
..++.| +++.++++.++++.+||++++++. ..| -+.|+++.+.. .|++.+... |+|+..+-+++ .+
T Consensus 169 timagG---de~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G 244 (327)
T KOG0409|consen 169 TIMAGG---DEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG 244 (327)
T ss_pred EEEecC---cHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 555554 899999999999999999999975 333 36688866443 399999977 99999999999 44
No 118
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.69 E-value=1e-16 Score=152.60 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=116.9
Q ss_pred cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 14 ~v~~i~l~~p--~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+|++|.++-| + .+..+...+.+|.++|+.+..||++++|||+ .||.|+|+..+.. ..+.+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence 4778888766 3 2444566789999999999999999999998 6999999976532 12345
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCC----------CCcchhhccccccCH----
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI----------PGFGGTQRLPRLVGL---- 156 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~----------p~~g~~~~l~r~vG~---- 156 (539)
+.+++++|||||+++|.|.|+|+.|+++||++++++++.|+. +|++ +..|..+.+.+..|.
T Consensus 64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs----iGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~ 138 (211)
T cd07019 64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS----IGIFGVITTVENSLDSIGVHTDGVSTSPLADVS 138 (211)
T ss_pred -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE----eEEEEEcCCHHHHHHhcCCceEEEEecCcccCC
Confidence 568889999999999999999999999999999999999873 3333 333333322222120
Q ss_pred -----------------------------------HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH
Q 009256 157 -----------------------------------SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (539)
Q Consensus 157 -----------------------------------~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 191 (539)
....+-+..|..+++++|++.||||+|...++...
T Consensus 139 ~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 139 ITRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 11123355788999999999999999987776554
No 119
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.69 E-value=1e-15 Score=153.57 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=132.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||..|+++|++|++||+++++.+.+.+ .+ .....+. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence 58999999999999999999999999999999998776532 11 2223344 66789
Q ss_pred cCEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~ 459 (539)
||+||+|+|++..++..+.. .+.+.++++.++++.++..+.. ++...+. ..-+++.......+ ..+.+..++
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~ 137 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLA 137 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEE
Confidence 99999999988766655542 4666788888887655544432 3433332 22334444333322 233444455
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcCc-cc---chhhcchH----HHHHHHHHHHHc-CCCHHHHHHHHH
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAIR 523 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-~g---~v~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~~ 523 (539)
.+ +++.+++++++++.+|+.++++++. .| -++|+++. ..+.|++.+++. |++++.+-+++.
T Consensus 138 gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 138 GG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred CC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 55 8899999999999999999999863 22 13455433 345699999987 999999888883
No 120
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.66 E-value=4.2e-15 Score=147.22 Aligned_cols=185 Identities=19% Similarity=0.133 Sum_probs=134.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
+||+|||+|.||.+|+..|.++|+ +|++| |+++++.+.+.+ .| +...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-----------LG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-----------cC-------------CEEeCChH
Confidence 379999999999999999999998 89999 999887655421 12 2233344
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecC
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT 461 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~ 461 (539)
+.+++||+||+|++ ++....++.++.+.++++++|+|.+++++..++....... ++++.+|..|...+..+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 56789999999996 5557788888888888888888888899998888766543 688888877776665554 4567
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcCc-----ccc--hhhcchHHHHHHHHH--HHHcCCCHHHHHHHH
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGF--AVNRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~~-----~g~--v~nrl~~~~~~Ea~~--l~~~G~~~~~id~a~ 522 (539)
..++++.++.++++|+.+|. ++++++. .+. -...+++ .+.|++. ..+.|+++++..+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~-~~~~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIF-LAIEALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77899999999999999999 7777431 111 1122222 2233322 334599998877776
No 121
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.65 E-value=1.9e-15 Score=150.41 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=117.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
+|+|||+|.||.++|..|.++|++|++||++++.++.+.+ .|..+ ...++.+.+++||
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence 7999999999999999999999999999999988776532 22111 1223345678999
Q ss_pred EEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCC------------CCCeee
Q 009256 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE 457 (539)
Q Consensus 390 lVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~------------~~~~ve 457 (539)
+||+|+|++. ...+++++.++++++++|++ +++.....+........+|++.||+.++. .+..+.
T Consensus 60 lVilavp~~~--~~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 60 LVILALPIGL--LLPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred EEEEcCCHHH--HHHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 9999999544 45678899999988887755 44455544444434445799999976543 345556
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
+++++.++++.++.++++++.+|..++++++
T Consensus 137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 137 LTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 8888899999999999999999999998853
No 122
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.65 E-value=3.6e-15 Score=149.00 Aligned_cols=189 Identities=17% Similarity=0.183 Sum_probs=128.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
||+|||+|.||.+|+.+|.++||+|++||+++. .+.+ ...| .....+. +.+++|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a 56 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS 56 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence 799999999999999999999999999999874 2322 1112 1122233 567899
Q ss_pred CEEEEcccCChhHHHHHHHH--HHHhCCCCeEEEecCCCCChH--HHhhcc-CCCCcEEEeccCCCC---CCCCeeeeec
Q 009256 389 DMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN--IVGEKT-SSQDRIIGAHFFSPA---HVMPLLEIVR 460 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~--l~~~~~~~~ii~s~ts~~~~~--~i~~~~-~~~~r~vg~h~~~p~---~~~~~vei~~ 460 (539)
|+||.|+|++.+++..++.. +.+.+.++.+++..++..+.. +++..+ .+..+|+.......+ ..+.+.-++.
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~g 136 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVG 136 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEc
Confidence 99999999887777666542 566677888887655443332 333333 233345554322222 2344455556
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEEcCc-ccc---hhhcchHH----HHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-~g~---v~nrl~~~----~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
| +++.+++++++++.+|+.++++++. .|. ++|+++.. .+.|++.+.+. |++++.+-+++ .+.+
T Consensus 137 G---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~ 209 (292)
T PRK15059 137 G---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA 209 (292)
T ss_pred C---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence 6 7899999999999999999999873 222 34555432 34599999977 99999988888 4443
No 123
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.65 E-value=1.2e-15 Score=152.60 Aligned_cols=186 Identities=17% Similarity=0.104 Sum_probs=130.1
Q ss_pred EEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEE
Q 009256 313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV 391 (539)
Q Consensus 313 iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 391 (539)
|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| ...+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA-----------AG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcCCEE
Confidence 6899999999999999999999999999988776532 11 2223344 668899999
Q ss_pred EEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH---HHhhccC-CCCcEEEeccCCCC---CCCCeeeeecCC
Q 009256 392 IEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRTE 462 (539)
Q Consensus 392 i~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~~~~ 462 (539)
|.|+|.+..+...++ +.+.+.++++.++++.+ ++.+. .+.+.+. ...+++.......+ ..+.+..++.+
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg- 134 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGG- 134 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECC-
Confidence 999997666554443 56777888888887655 55554 3333332 22233333222111 23345555666
Q ss_pred CCcHHHHHHHHHHHHHcCceeEEEcC-cccc---hhhcchHH----HHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 463 RTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 463 ~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~---v~nrl~~~----~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
+++.+++++++++.+|+.++++++ ..|. ++|+++.. .+.|++.++++ |++++++.+++ .+.|
T Consensus 135 --~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 135 --VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred --CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 678999999999999999999986 4444 44555432 45699999977 99999999999 4444
No 124
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.64 E-value=2.3e-16 Score=144.16 Aligned_cols=153 Identities=15% Similarity=0.082 Sum_probs=104.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
|+||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .......++ +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~------------------------~g~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE------------------------AGAEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH------------------------TTEEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH------------------------hhhhhhhhhhhHhh
Confidence 579999999999999999999999999999999998887643 124445555 6788
Q ss_pred CcCEEEEcccCChhHHHHHHHH--HHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeee
Q 009256 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 458 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~--l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei 458 (539)
+||+||.|+|++.+++ .++.+ +.+.++++.+++..++..+.. ++++.+. ..-+++.......+ ..+++.-+
T Consensus 57 ~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~ 135 (163)
T PF03446_consen 57 QADVVILCVPDDDAVE-AVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIM 135 (163)
T ss_dssp HBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEE
T ss_pred cccceEeecccchhhh-hhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEE
Confidence 9999999999777655 55555 888899999888655443322 3444332 22233333322221 23456667
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCceeEEE-cC
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVPVVV-GN 488 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~v~v-~~ 488 (539)
+.| +++++++++++++.++.+++++ ++
T Consensus 136 ~gG---~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 136 VGG---DEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp EES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred ccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence 777 7899999999999999998854 64
No 125
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.64 E-value=7.3e-16 Score=164.25 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=82.6
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcch
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP 531 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gp 531 (539)
+.+|++++..|++++++++..++..+|+.|++++|.|||++||++++++|||..++++|+ +++|||.+| .++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578899999999999999999999999999999999999999999999999999999998 899999999 799999999
Q ss_pred hhccccCC
Q 009256 532 FQEGGCWS 539 (539)
Q Consensus 532 f~~~d~~~ 539 (539)
|+|+|.++
T Consensus 458 ~~~~D~~G 465 (503)
T TIGR02279 458 LAWAAQLG 465 (503)
T ss_pred HHHHHHhC
Confidence 99999864
No 126
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.62 E-value=5e-15 Score=156.14 Aligned_cols=193 Identities=12% Similarity=0.099 Sum_probs=130.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c---
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S--- 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~--- 383 (539)
+.+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+... ..|. ..+....++ +
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~-------~~Ga----------~~~~~a~s~~e~v~ 68 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGN----------LPLYGFKDPEDFVL 68 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh-------hcCC----------cccccCCCHHHHHh
Confidence 457999999999999999999999999999999999887644210 0010 011123333 3
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeee
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE 457 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~ve 457 (539)
.++.+|+||.|+|++..+.. ++..+.+.+.++.++++.++..+.. .+...+. ..-+|+++.....+ ..++ .-
T Consensus 69 ~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~i 146 (493)
T PLN02350 69 SIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SL 146 (493)
T ss_pred cCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eE
Confidence 33459999999998777654 4477888898999888766654433 3333332 23345554443322 3344 33
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCce------eEEEcCc-ccc----hhhcchHH---HHHHHHHHHHc--CCCHHHHHHH
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TGF----AVNRAFFP---YSQSARLLVSL--GVDVFRIDSA 521 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~------~v~v~~~-~g~----v~nrl~~~---~~~Ea~~l~~~--G~~~~~id~a 521 (539)
++.| +++++++++++++.++.+ ++++++. .|. +.|-+.+. .+.|++.+++. |++++++-++
T Consensus 147 m~GG---~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v 223 (493)
T PLN02350 147 MPGG---SFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV 223 (493)
T ss_pred EecC---CHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 4455 889999999999999954 7888862 232 33444443 34599999865 8999999888
Q ss_pred H
Q 009256 522 I 522 (539)
Q Consensus 522 ~ 522 (539)
+
T Consensus 224 f 224 (493)
T PLN02350 224 F 224 (493)
T ss_pred H
Confidence 4
No 127
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.58 E-value=4.4e-14 Score=140.75 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=133.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.+||+|||+|.||.+|+..|.++| ++|+++||+++ +++.+.+. . .+..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~----------~-------------g~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQK----------Y-------------GVKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHh----------c-------------CceEeCCH
Confidence 458999999999999999999998 79999999764 44443221 0 12233344
Q ss_pred -cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCC-eeeeec
Q 009256 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVR 460 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~-~vei~~ 460 (539)
+.+.+||+||.|++ +.....++.++.+.+.++.+|++..++++++.+........++++.+|+.|..... +.-+++
T Consensus 60 ~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 55789999999998 44456777888888888889999889999998888776555799999976655433 444557
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEEcCc-----ccchh--hcchHHHHHHHHH-HH-HcCCCHHHHHHHH
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAV--NRAFFPYSQSARL-LV-SLGVDVFRIDSAI 522 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-----~g~v~--nrl~~~~~~Ea~~-l~-~~G~~~~~id~a~ 522 (539)
++..+++.++.++++|+.+|... ++.+. .|... ..+ ..++.|++. .. +.|+++++..+++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77788999999999999999855 43321 11111 122 234445543 33 5599998877776
No 128
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.58 E-value=8.4e-14 Score=137.98 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=133.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
|++|+|||+|.||.+++..|.++| ++|.+||+++++.+.+.+.+ + +....+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 468999999999999999999999 78999999998876653311 1 2223333 4
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~~ 462 (539)
.+.+||+||+|+| +....++++++.+++ +++|++.+++++...++..++...+++..||..|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 5789999999998 555678888887776 457778888999888887776566899999988876665554 55777
Q ss_pred CCcHHHHHHHHHHHHHcCceeEEEc-Cc--ccch-h----hcchHHHHHHHHHHH-HcCCCHHHHHHHH
Q 009256 463 RTSAQVILDLMTVGKIIKKVPVVVG-NC--TGFA-V----NRAFFPYSQSARLLV-SLGVDVFRIDSAI 522 (539)
Q Consensus 463 ~t~~e~~~~~~~l~~~lg~~~v~v~-~~--~g~v-~----nrl~~~~~~Ea~~l~-~~G~~~~~id~a~ 522 (539)
.++++..+.++.+++.+|..+ ++. +. .... . ..+++.++....... +.|+++++..+++
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~-~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVV-WVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEE-EECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 889999999999999999744 444 21 1111 1 123333333333333 4588888765554
No 129
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.58 E-value=3e-14 Score=150.21 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=131.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC--
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-- 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-- 385 (539)
.+|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+... ..|. .+..+.++ +.+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHhc
Confidence 47999999999999999999999999999999999887754211 0010 12233444 333
Q ss_pred -CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC--------CCCCee
Q 009256 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--------HVMPLL 456 (539)
Q Consensus 386 -~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~--------~~~~~v 456 (539)
.++|+||.++|....+ +.+++++.+++.++.+|++.+++.+..+........+ .|.||++.| ..++ .
T Consensus 64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~-~ 139 (470)
T PTZ00142 64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGP-S 139 (470)
T ss_pred CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCC-E
Confidence 4689999999866554 5566889999999999998777766553322111111 145555444 2233 3
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCce------eEEEcC-cccc----hhhcchHH---HHHHHHHHHH--cCCCHHHHHH
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKV------PVVVGN-CTGF----AVNRAFFP---YSQSARLLVS--LGVDVFRIDS 520 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~------~v~v~~-~~g~----v~nrl~~~---~~~Ea~~l~~--~G~~~~~id~ 520 (539)
-++.| +++++++++++++.++.+ +.++++ ..|. +.|-+.+. .+.|++.+++ .|++++++-+
T Consensus 140 lm~GG---~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~ 216 (470)
T PTZ00142 140 LMPGG---NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSE 216 (470)
T ss_pred EEEeC---CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 34455 889999999999999987 677875 3332 33555444 3459999996 4899999988
Q ss_pred HHH
Q 009256 521 AIR 523 (539)
Q Consensus 521 a~~ 523 (539)
++.
T Consensus 217 v~~ 219 (470)
T PTZ00142 217 VFN 219 (470)
T ss_pred HHH
Confidence 874
No 130
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.58 E-value=6e-14 Score=144.96 Aligned_cols=171 Identities=19% Similarity=0.186 Sum_probs=121.7
Q ss_pred CcceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 307 ~~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
.+++|+||| +|.||+++|..|.++|++|++||+++.. .. .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~~----------------------------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--RA----------------------------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--hH----------------------------------HHHH
Confidence 467899998 9999999999999999999999986420 00 0335
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccCCCCcEEEeccCCCCCCCCeee--eecC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT 461 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve--i~~~ 461 (539)
++||+||+|+|++. ...+++++.+ ++++++|++++|. .++..+..... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 78999999999665 5678888888 8999999988775 33456655443 3699999998886543332 4455
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcC-cccchh---hcchH-HHHHHHHHHHHcCCCHHHH
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV---NRAFF-PYSQSARLLVSLGVDVFRI 518 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~v~---nrl~~-~~~~Ea~~l~~~G~~~~~i 518 (539)
+.++++.++.+.++++.+|..+++++. ....++ +-+-+ ....++..+.+.+.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 667889999999999999999999853 222222 22211 1122455555556665553
No 131
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.57 E-value=5.1e-14 Score=141.46 Aligned_cols=187 Identities=10% Similarity=0.043 Sum_probs=127.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
+|+|||+|.||.+||..|+++|++|++||+++++.+.+.+. +.....+ ..+. +.+.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~-----------g~~~~~s----------~~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED-----------RTTGVAN----------LRELSQRLSAP 60 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----------CCcccCC----------HHHHHhhcCCC
Confidence 79999999999999999999999999999999987776331 1100000 0111 345679
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH--Hhhcc-CCCCcEEEeccCCCC---CCCCeeeeecCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKT-SSQDRIIGAHFFSPA---HVMPLLEIVRTE 462 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~--i~~~~-~~~~r~vg~h~~~p~---~~~~~vei~~~~ 462 (539)
|+||.|+|.+ ..+.+++++.++++++.+|++.+++.+... +...+ ....+++..+....+ ..+ +.-++.|
T Consensus 61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG- 136 (298)
T TIGR00872 61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGG- 136 (298)
T ss_pred CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCC-
Confidence 9999999976 466777889999989888887766654432 22222 222344444433222 112 3334455
Q ss_pred CCcHHHHHHHHHHHHHcCc---eeEEEcCc-ccc----hhhcchHHH---HHHHHHHHHc-C--CCHHHHHHHHH
Q 009256 463 RTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF----AVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAIR 523 (539)
Q Consensus 463 ~t~~e~~~~~~~l~~~lg~---~~v~v~~~-~g~----v~nrl~~~~---~~Ea~~l~~~-G--~~~~~id~a~~ 523 (539)
+++.++.++++++.++. ..+++++. .|. +.|-+.+.. +.|++.+++. | ++++++-++|+
T Consensus 137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 78999999999999986 46788763 222 334454433 3499999987 5 59999999993
No 132
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.57 E-value=1.4e-13 Score=136.08 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=125.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +...++. +.
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e~ 60 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNEV 60 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHHH
Confidence 79999999999999999999885 799999999887665321 11 2223344 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee-cCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~-~~~~ 463 (539)
+.+||+||.|++ +.....+++++.++++++.+++|...++++.+++..+....+++...|+.|...+..+..+ +++.
T Consensus 61 ~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~ 138 (272)
T PRK12491 61 ANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEM 138 (272)
T ss_pred HhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCC
Confidence 789999999998 4667788899998888889999999999999999988766689999999988887777655 6777
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEc
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
.+++..+.++.+|..+|.. +++.
T Consensus 139 ~~~~~~~~v~~lf~~~G~~-~~~~ 161 (272)
T PRK12491 139 VTEKDIKEVLNIFNIFGQT-EVVN 161 (272)
T ss_pred CCHHHHHHHHHHHHcCCCE-EEEc
Confidence 8899999999999999987 4554
No 133
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.57 E-value=5.4e-14 Score=147.30 Aligned_cols=202 Identities=13% Similarity=0.119 Sum_probs=128.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
++||+|||+|.||.++|..|+++||+|++||+++++++.+.... +..++..+.+. ...+++..+++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~--------~~~g~l~~~~~-- 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTA--------VEGGYLRATTT-- 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHH--------hhcCceeeecc--
Confidence 57899999999999999999999999999999999988753211 00011111000 00133444443
Q ss_pred CCCCcCEEEEcccCC--------hhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCC--CC-cE-------EE
Q 009256 384 EFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS--QD-RI-------IG 443 (539)
Q Consensus 384 ~~~~aDlVi~avpe~--------~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~--~~-r~-------vg 443 (539)
+++||+||.|+|.+ ......+.+.+.++++++++|+..|+..+-+ .+...+.. +. ++ ..
T Consensus 73 -~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 73 -PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred -cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 45899999999974 2455666788999999999887544432221 22221110 00 00 00
Q ss_pred ecc-CCCC--CCCCee-------eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCc-----ccchhhcchH---HHHHHH
Q 009256 444 AHF-FSPA--HVMPLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAVNRAFF---PYSQSA 505 (539)
Q Consensus 444 ~h~-~~p~--~~~~~v-------ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-----~g~v~nrl~~---~~~~Ea 505 (539)
.++ ++|- .-+..+ -++.| .+++..++++++++.++..++++++. ..++.|-++. +++||+
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~ 229 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANEL 229 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 1221 111111 34444 37899999999999999888777642 2244465533 778999
Q ss_pred HHHHHc-CCCHHHHHHHH
Q 009256 506 RLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 506 ~~l~~~-G~~~~~id~a~ 522 (539)
..+++. |+++.++-+++
T Consensus 230 ~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 230 SLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHhCCCHHHHHHHh
Confidence 999988 99999998888
No 134
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.55 E-value=1.8e-13 Score=137.56 Aligned_cols=185 Identities=17% Similarity=0.091 Sum_probs=124.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-- 386 (539)
+|+|||+|.||.+||.+|+++|++|++||+++++.+.+.+ .| .....+. +.++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-----------LG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHHhC
Confidence 7999999999999999999999999999999987766522 11 1223333 3333
Q ss_pred -CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeee
Q 009256 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (539)
Q Consensus 387 -~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~ 459 (539)
.+|+||.|+|++..+ +.++.++.+.++++.+++..+++.+.. ++...+. +..+++.......+ ..+. .-++
T Consensus 58 ~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~ 135 (299)
T PRK12490 58 EAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMV 135 (299)
T ss_pred CCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEe
Confidence 379999999977554 455577888888888887665544432 3333332 22233333322222 1222 3344
Q ss_pred cCCCCcHHHHHHHHHHHHHcCc---eeEEEcCc-ccc---hhhcch-H---HHHHHHHHHHHc-C--CCHHHHHHHHH
Q 009256 460 RTERTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF---AVNRAF-F---PYSQSARLLVSL-G--VDVFRIDSAIR 523 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~---~~v~v~~~-~g~---v~nrl~-~---~~~~Ea~~l~~~-G--~~~~~id~a~~ 523 (539)
.| +++++++++++++.+|. .++++++. .|. ++|+++ . ..+.|++.++++ | ++++++-++|.
T Consensus 136 gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 136 GG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred cC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHc
Confidence 55 78999999999999997 78888862 121 334443 3 234499999987 8 89999999984
No 135
>PLN02858 fructose-bisphosphate aldolase
Probab=99.55 E-value=7.5e-14 Score=163.95 Aligned_cols=191 Identities=15% Similarity=0.100 Sum_probs=137.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| ....++. +.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE-----------LG-------------GHRCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhc
Confidence 57999999999999999999999999999999998887633 22 2223444 67789
Q ss_pred cCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccC-CC--CcEEEeccCCCC---CCCCeee
Q 009256 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQ--DRIIGAHFFSPA---HVMPLLE 457 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~--~r~vg~h~~~p~---~~~~~ve 457 (539)
||+||.|+|++.+++..++ ..+.+.+.++.+++..++..+.. +++..+. .. -+++.......+ ..+.+.-
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~i 140 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMI 140 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEE
Confidence 9999999999888777665 35777788888887654433322 3443332 22 224444333322 3456666
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCceeEEE-cC-cccc---hhhcchHH----HHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKVPVVV-GN-CTGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~~v~v-~~-~~g~---v~nrl~~~----~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
++.| +++.+++++++++.+|+.++++ ++ +.|. ++|+++.. .+.|++.+.+. |++++.+-+++ .+.|
T Consensus 141 mvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g 217 (1378)
T PLN02858 141 IASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAG 217 (1378)
T ss_pred EEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 7777 7899999999999999998876 54 2232 44665443 34599999977 99999999999 5544
No 136
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.55 E-value=5.7e-14 Score=141.42 Aligned_cols=182 Identities=17% Similarity=0.144 Sum_probs=124.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-- 386 (539)
+|+|||+|.||.+||.+|+++|++|++||+++++.+.+.+ .| ....++. +.++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-----------EG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHhhc
Confidence 7999999999999999999999999999999988776522 12 2222233 2223
Q ss_pred -CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCCC-------Cee
Q 009256 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PLL 456 (539)
Q Consensus 387 -~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~~-------~~v 456 (539)
++|+||.++|.+..+ ..++..+.+.++++.++++.+++.+.. .+...+... |.+|.+.|-.+ ...
T Consensus 58 ~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence 479999999976554 455577888888888888766554433 333333211 34444433221 122
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCc----eeEEEcCc-ccc---hh-hcchHHH---HHHHHHHHH---cCCCHHHHHHH
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKK----VPVVVGNC-TGF---AV-NRAFFPY---SQSARLLVS---LGVDVFRIDSA 521 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~----~~v~v~~~-~g~---v~-nrl~~~~---~~Ea~~l~~---~G~~~~~id~a 521 (539)
-++.| +++++++++++++.+++ .++++++. .|. ++ |-+.+.. +.|++.+++ .|++++++-++
T Consensus 133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 LMIGG---DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred EEecC---CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23444 88999999999999998 78889873 222 22 4444433 349999996 47899999999
Q ss_pred HH
Q 009256 522 IR 523 (539)
Q Consensus 522 ~~ 523 (539)
|.
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 94
No 137
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.55 E-value=2.6e-14 Score=154.91 Aligned_cols=172 Identities=22% Similarity=0.254 Sum_probs=135.6
Q ss_pred cCcEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC---CCCcccCCCchhhhhhcCCCcccccchH
Q 009256 12 NDGVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 12 ~~~v~~i~l~~p-~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
+++|++|+++.+ . .|..+....+.+.+.++.+..|++||+|||+-. |..|++ +.
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as--------------------e~ 366 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS--------------------EI 366 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH--------------------HH
Confidence 578999999987 2 354444456788899999999999999999854 222322 01
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceE------eCCc------ccCCCCCCcchhhcccc-
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR- 152 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~l~r- 152 (539)
..+.+ ..+...+||||+.++|.|.+||+.++++||.++|++++.+ +.+. .++|+.|+...+..+.+
T Consensus 367 i~~~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 367 IRREL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 12333 4467788999999999999999999999999999999977 5553 58999998887776665
Q ss_pred ---------------------------ccCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHH
Q 009256 153 ---------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI 200 (539)
Q Consensus 153 ---------------------------~vG~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 200 (539)
.|+..| +.+.+.+|+.++++||+++||||++. .+ +++.+.|.++
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~l 521 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKL 521 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHH
Confidence 677777 88899999999999999999999994 34 6778888888
Q ss_pred Hhc-Cchhh
Q 009256 201 AAR-RKPWI 208 (539)
Q Consensus 201 a~~-~~~~~ 208 (539)
+.. ++..+
T Consensus 522 a~~~~~~~v 530 (584)
T TIGR00705 522 AHCREQWSV 530 (584)
T ss_pred cCCCCCceE
Confidence 888 44433
No 138
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=1.6e-13 Score=136.84 Aligned_cols=198 Identities=19% Similarity=0.242 Sum_probs=145.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||.|++|...+.+|++.||+|+.+|+++++++.+.+.. +..++++++.+..+ +++++++|+ +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 4899999999999999999999999999999999999988753 56677777766544 679999999 6
Q ss_pred CCCCcCEEEEcccC--------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH---Hhhc----c--------CCCCc
Q 009256 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEK----T--------SSQDR 440 (539)
Q Consensus 384 ~~~~aDlVi~avpe--------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~---i~~~----~--------~~~~r 440 (539)
+++++|++|+|||. |......+.++|.++++..++|+ +.|++|+.+ +... . .+|+-
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 79999999999976 45566777888999998876654 567777642 2221 1 11210
Q ss_pred ----EEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHc--CceeEEEcC-----cccchhhcchH---HHHHHHH
Q 009256 441 ----IIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGN-----CTGFAVNRAFF---PYSQSAR 506 (539)
Q Consensus 441 ----~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~l--g~~~v~v~~-----~~g~v~nrl~~---~~~~Ea~ 506 (539)
..--.|++|.++ |++.. ++++.+.+++++..+ ...|+.+.+ ...+..|.+|+ +++||..
T Consensus 152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001124566554 55543 444677777787665 445555533 34577788876 7899999
Q ss_pred HHHHc-CCCHHHHHHHH
Q 009256 507 LLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 507 ~l~~~-G~~~~~id~a~ 522 (539)
.+++. |++.++|-+.+
T Consensus 225 ~ice~~g~D~~~V~~gI 241 (414)
T COG1004 225 NICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHHhCCCHHHHHHHc
Confidence 99988 99999998887
No 139
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.53 E-value=5e-14 Score=134.46 Aligned_cols=144 Identities=27% Similarity=0.324 Sum_probs=101.3
Q ss_pred CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhC--CCcE
Q 009256 25 VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC--KKPI 101 (539)
Q Consensus 25 ~Na-l~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~p~ 101 (539)
.|+ ++..++.+|.++++.++.|+++++|||+. +|.|+++... ..+. +.|..+ +|||
T Consensus 18 ~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~-~~l~~~~~~KpV 76 (214)
T cd07022 18 LEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELA-DAIRAARAGKPI 76 (214)
T ss_pred ccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHH-HHHHHHhcCCCE
Confidence 354 56789999999999999999999999975 5566654322 1122 334444 5999
Q ss_pred EEEEcCccccchhHhhhccCEEEeeCCceEeCCccc------------CCCCCCc---------chhh---------cc-
Q 009256 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF---------GGTQ---------RL- 150 (539)
Q Consensus 102 iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~~---------g~~~---------~l- 150 (539)
||+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+.. +..+ .+
T Consensus 77 iA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~ 156 (214)
T cd07022 77 VAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQ 156 (214)
T ss_pred EEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999998654332 3332110 0000 00
Q ss_pred ----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH
Q 009256 151 ----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (539)
Q Consensus 151 ----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 191 (539)
.|.+......+++ |+.+++++|++.||||++...+++..
T Consensus 157 ~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 157 AEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 1222233334444 99999999999999999987776543
No 140
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.53 E-value=1.1e-13 Score=145.59 Aligned_cols=201 Identities=19% Similarity=0.153 Sum_probs=131.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||+|||+|.||.++|..|+++||+|++||+++++++.+.+.. +..+...+.+. ...+++++++++ ++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~~ 73 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYEDA 73 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHHH
Confidence 799999999999999999999999999999999888764311 00011111100 001345666676 56
Q ss_pred CCCcCEEEEcccCChh--------HHHHHHHHHHHhCCCCeEEEecCCCCChH---HHh-hccCC-------CCcEEEec
Q 009256 385 FKDVDMVIEAVIESVP--------LKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS-------QDRIIGAH 445 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~--------~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~-~~~~~-------~~r~vg~h 445 (539)
+++||+||+|+|.... ....+.+.+.++++++++++..| ++++. ++. ..... ..-.+..+
T Consensus 74 ~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~ 152 (411)
T TIGR03026 74 IRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYN 152 (411)
T ss_pred HhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEEC
Confidence 8999999999997643 35566788888888988877543 44333 232 11111 11122333
Q ss_pred cCCCCCCCCe-------eeeecCCCCcHHHHHHHHHHHHHcC-ceeEEEcCcc-----cchhhcch---HHHHHHHHHHH
Q 009256 446 FFSPAHVMPL-------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRAF---FPYSQSARLLV 509 (539)
Q Consensus 446 ~~~p~~~~~~-------vei~~~~~t~~e~~~~~~~l~~~lg-~~~v~v~~~~-----g~v~nrl~---~~~~~Ea~~l~ 509 (539)
|-.. ..+.. ..++.| .+++..++++++++.++ ..++++++.. .++.|-++ .++++|+..++
T Consensus 153 Pe~~-~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 153 PEFL-REGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred CCcC-CCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3110 11111 023333 38999999999999998 5777776522 23445442 47789999999
Q ss_pred Hc-CCCHHHHHHHH
Q 009256 510 SL-GVDVFRIDSAI 522 (539)
Q Consensus 510 ~~-G~~~~~id~a~ 522 (539)
+. |++++++-+++
T Consensus 230 ~~~GiD~~~v~~~~ 243 (411)
T TIGR03026 230 EALGIDVYEVIEAA 243 (411)
T ss_pred HHhCCCHHHHHHHh
Confidence 88 99999999998
No 141
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.51 E-value=2.1e-13 Score=141.14 Aligned_cols=192 Identities=14% Similarity=0.198 Sum_probs=121.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||+|||+|.||.++|..++. ||+|++||+++++++.+.+.+ +..+.+.+... ..+++.+++. ++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~----------~~~l~~t~~~~~~ 70 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD----------KIHFNATLDKNEA 70 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC----------CCcEEEecchhhh
Confidence 79999999999999988875 999999999999999886632 11222222111 1345555555 66
Q ss_pred CCCcCEEEEcccCCh---------hHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccC------CCCcEEEe--
Q 009256 385 FKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS------SQDRIIGA-- 444 (539)
Q Consensus 385 ~~~aDlVi~avpe~~---------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~------~~~r~vg~-- 444 (539)
+++||+||+|+|++. .....+++.+.+ ++++.+++.. |++++. ++...+. .|++..-.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~-STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~a 148 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIK-STVPVGFTAAMHKKYRTENIIFSPEFLREGKA 148 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEe-eecCCchHHHHHHHhhcCcEEECcccccCCcc
Confidence 799999999999864 233455677776 5778777643 333433 3332221 12211100
Q ss_pred --ccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHH--cCceeE-EEcC-----cccchhhcchH---HHHHHHHHHHHc
Q 009256 445 --HFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGN-----CTGFAVNRAFF---PYSQSARLLVSL 511 (539)
Q Consensus 445 --h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~--lg~~~v-~v~~-----~~g~v~nrl~~---~~~~Ea~~l~~~ 511 (539)
.+++|+.+ ++++ +++..+.+.+++.. ++..+. ++.+ ...++.|-++. +++||+..+++.
T Consensus 149 ~~d~~~p~rv-----v~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 149 LYDNLHPSRI-----VIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred cccccCCCEE-----EEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333322 4444 34566777777754 554333 4543 22345565543 788999999988
Q ss_pred -CCCHHHHHHHH
Q 009256 512 -GVDVFRIDSAI 522 (539)
Q Consensus 512 -G~~~~~id~a~ 522 (539)
|+++.++-+++
T Consensus 221 ~GiD~~eV~~a~ 232 (388)
T PRK15057 221 LGLNTRQIIEGV 232 (388)
T ss_pred hCcCHHHHHHHh
Confidence 99999999998
No 142
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.51 E-value=7.8e-14 Score=127.27 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcC
Q 009256 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (539)
Q Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G 107 (539)
++..++++|.+.++.++.|+.+++|+|.. .|.|+|+... ..+. +.|..++||||+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence 56688999999999999999999999976 4667765421 2344 6688899999999999
Q ss_pred ccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchh-------------hcc------ccccCHHHHHHHHHcCCC
Q 009256 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRL------PRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 108 ~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~-------------~~l------~r~vG~~~a~~l~l~g~~ 168 (539)
.|.++|+.|+++||.|++.+++.|++.....+.....+-. ..+ .|.+......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988775543211000 111 122344456788889999
Q ss_pred CCHHHHHHcCCccee
Q 009256 169 ITSEEGWKLGLIDAV 183 (539)
Q Consensus 169 ~~a~eA~~~Glv~~v 183 (539)
++++||+++||||+|
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 143
>PLN02858 fructose-bisphosphate aldolase
Probab=99.51 E-value=2.5e-12 Score=151.23 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=133.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.+++|+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| .....+. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFEN-----------AG-------------GLAGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHH
Confidence 3578999999999999999999999999999999988776532 12 1112334 667
Q ss_pred CCcCEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCC--------CCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPA--------HVM 453 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~--------~~~ 453 (539)
++||+||.|+|++.+++..++. .+.+.+.++.+++..++.-|.. +++..+... -.|.+|.+.| ..+
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~--g~g~~~lDAPVsGg~~~A~~G 456 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENE--GRDIKLVDAPVSGGVKRAAMG 456 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhh--CCCcEEEEccCCCChhhhhcC
Confidence 8999999999988777666653 3666778888887554433322 343333220 0134444433 344
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc--c---hhhcchH----HHHHHHHHHHHc-CCCHHHHHHHH-
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG--F---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI- 522 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g--~---v~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~- 522 (539)
.+.-++.| +++.+++++++++.+|+.++++++.+| . ++|+++. +.+.|++.+++. |++++.+-+++
T Consensus 457 ~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~ 533 (1378)
T PLN02858 457 TLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIIS 533 (1378)
T ss_pred CceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55566666 789999999999999998887643334 2 4465543 345699999977 99999999988
Q ss_pred HhCC
Q 009256 523 RSFG 526 (539)
Q Consensus 523 ~~~g 526 (539)
.+.|
T Consensus 534 ~s~g 537 (1378)
T PLN02858 534 NAGG 537 (1378)
T ss_pred hhcc
Confidence 4544
No 144
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.50 E-value=6.5e-13 Score=132.10 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=109.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
||+|||+|.||.++|..|.++|+ +|++||++++..+.+.+ .|. .....+.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-----------~g~------------~~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-----------LGL------------VDEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-----------CCC------------CcccCCHHHHhc
Confidence 79999999999999999999996 79999999987666422 221 111223333456
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC-hHHHhhccCCCCcEEEeccCCC-----C-C------CCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-LNIVGEKTSSQDRIIGAHFFSP-----A-H------VMP 454 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~-~~~i~~~~~~~~r~vg~h~~~p-----~-~------~~~ 454 (539)
||+||.|+|.+ ....++.++.+ ++++++|++.+|+.. +.+..... .+.++++.||+.+ | . .+.
T Consensus 59 aD~Vilavp~~--~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~ 134 (275)
T PRK08507 59 CDVIFLAIPVD--AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEGK 134 (275)
T ss_pred CCEEEEeCcHH--HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCCC
Confidence 99999999944 45577788888 888888887555322 11111111 2347999999742 2 1 345
Q ss_pred eeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 455 ~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.+.+++.+.++++.++.++++++.+|..++++++
T Consensus 135 ~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 135 VVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 6667788888999999999999999999999863
No 145
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.49 E-value=4.1e-13 Score=138.39 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=115.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.+||..|.++|++|.+|+++++..+.... ...+..+ ..+++. +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 37999999999999999999999999999998876443211 1112111 112333 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHH-hCCCCeEEEecCCCC--ChHHHhhccCCCCcEEEeccCCCCC------------C
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------------V 452 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~-~~~~~~ii~s~ts~~--~~~~i~~~~~~~~r~vg~h~~~p~~------------~ 452 (539)
||+||+|+|.+ ....+++++.+ .++++++|++.+|.. ....+........+|++.||+.... .
T Consensus 61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 99999999954 56788899887 478888886555442 2334444445667899999865431 2
Q ss_pred CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 453 ~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+....+++++.++++.++.++++++.+|..++++.
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~ 173 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLD 173 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 33455788888999999999999999999999884
No 146
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.49 E-value=1e-12 Score=133.30 Aligned_cols=181 Identities=15% Similarity=0.059 Sum_probs=121.1
Q ss_pred cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEEEEcccCC
Q 009256 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (539)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi~avpe~ 398 (539)
|.+||..|+++||+|++||++++.++... . +..... .++.+++. +.+++||+||.|+|.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~--~----~~l~~~-------------Gi~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL--W----KKVEDA-------------GVKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH--H----HHHHHC-------------CCEEeCCHHHHHhCCCEEEEECCCc
Confidence 78999999999999999999988644311 0 111122 23444454 6678999999999965
Q ss_pred hhHHHHHHHHHHHhCCCCeEEEecCCCCChH----HHhhccCCCCcEEEeccCCCCCC----CCeeeeecCC------CC
Q 009256 399 VPLKQKIFSELEKACPPHCILATNTSTIDLN----IVGEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTE------RT 464 (539)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~----~i~~~~~~~~r~vg~h~~~p~~~----~~~vei~~~~------~t 464 (539)
. ..+.++..+.+.++++++|++.+++ ++. .+...+..+.+.+|.+|++|... ...++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVICNTCTV-SPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEEecCC-CHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 5 3566778899999999988765544 433 33344544445567777665432 1223444433 33
Q ss_pred cHHHHHHHHHHHHHcCceeEEEcCcccch---hhcchHHHH----HHHHHHHHc-CCCHHHHHHH
Q 009256 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPYS----QSARLLVSL-GVDVFRIDSA 521 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v~~~~g~v---~nrl~~~~~----~Ea~~l~~~-G~~~~~id~a 521 (539)
+++.+++++++++.+|+++++++...|.+ +|+++.+.. .|++.+.++ |.+|.++-+-
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~ 235 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEK 235 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 89999999999999999998887544433 356655443 488888877 7777765443
No 147
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.48 E-value=2e-13 Score=129.80 Aligned_cols=155 Identities=22% Similarity=0.268 Sum_probs=110.2
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHH
Q 009256 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (539)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (539)
|++|.++-+ ... ...++.+|.++++.++.|+++++|+|++ +|.|+|+.... ...+.+ +.
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i-~~ 61 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI-RR 61 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-HH
Confidence 566777654 111 3789999999999999999999999998 57899886521 122445 56
Q ss_pred HHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcc------------cCCCCCCcchh--------------
Q 009256 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGT-------------- 147 (539)
Q Consensus 94 i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g~~-------------- 147 (539)
+..++|||||+++|.|.|+|+.|+++||.+++++++.|+..-+ ++|+-+..-.+
T Consensus 62 ~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s 141 (208)
T cd07023 62 LRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLT 141 (208)
T ss_pred HHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCC
Confidence 7889999999999999999999999999999999998864322 13332211100
Q ss_pred ----hcc-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHH
Q 009256 148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190 (539)
Q Consensus 148 ----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 190 (539)
..+ .|.+.... .+-++.|..+++++|++.||||++...++..
T Consensus 142 ~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 142 EEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 000 11111122 2335678999999999999999998666544
No 148
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.48 E-value=3.2e-13 Score=142.48 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=127.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~ 385 (539)
+|+|||+|.||.+||.+|+++||+|++||+++++.+.+.+.. ..+. .+....+. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--------~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--------AKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--------cCCC-----------CceecCCHHHHHhhc
Confidence 489999999999999999999999999999999887764320 0010 01112222 335
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH--hhcc-CCCCcEEEeccCCCC---CCCCeeeee
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKT-SSQDRIIGAHFFSPA---HVMPLLEIV 459 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i--~~~~-~~~~r~vg~h~~~p~---~~~~~vei~ 459 (539)
+.+|+||.|+|.+..+ ..++.++.++++++.+|++.+++.+.... ...+ ....+|++++....+ ..++ .-++
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~ 139 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMP 139 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCC
Confidence 6799999999976554 45668898999999999887766554432 2222 222234444433322 1222 2233
Q ss_pred cCCCCcHHHHHHHHHHHHHcCcee------EEEcCc-ccc----hhhcchHHH---HHHHHHHHH--cCCCHHHHHHHHH
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVP------VVVGNC-TGF----AVNRAFFPY---SQSARLLVS--LGVDVFRIDSAIR 523 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~------v~v~~~-~g~----v~nrl~~~~---~~Ea~~l~~--~G~~~~~id~a~~ 523 (539)
.| +++++++++++++.++..+ .++++. .|. +.|-+.+.. +.|++.+++ .|++++++-+++.
T Consensus 140 GG---~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 140 GG---SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred CC---CHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34 8899999999999999873 677753 332 335554444 349999874 4899999888884
No 149
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.48 E-value=8.3e-13 Score=129.84 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=118.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--ccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YSEF 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~ 385 (539)
.++|+|+|+|.||+++|+.+..+|+.|.+++++......... .+.|..+. .+.+ .+.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a---------~~lgv~d~-----------~~~~~~~~~~ 62 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA---------LELGVIDE-----------LTVAGLAEAA 62 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH---------hhcCcccc-----------cccchhhhhc
Confidence 468999999999999999999999988777666543222111 22232221 1112 2567
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccCCCCcEEEeccCCCCC------CCCeee
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------VMPLLE 457 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~~~~r~vg~h~~~p~~------~~~~ve 457 (539)
.++|+||.||| ......+++++.++++++++|++.+|.. ++..+....+...+|+|.||+..|+ ....+.
T Consensus 63 ~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~v 140 (279)
T COG0287 63 AEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVV 140 (279)
T ss_pred ccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEE
Confidence 88999999999 7778899999999999999998777653 3445555453323899999988772 335567
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+++.+.++.+.++.++.+++.+|..++.+.
T Consensus 141 ltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 141 LTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 889988999999999999999999999884
No 150
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.47 E-value=3.6e-13 Score=141.01 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=124.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||+|||+|.||.++|.+|++ ||+|++||+++++++.+.+..... .+. ..++.. ..+++.++++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~----~e~---~~~~l~-~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVN----LET---TEEELR-EARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCC----CCC---CHHHHH-hhCCeeEEeCHHHHcCC
Confidence 489999999999999999877 699999999999988875321000 000 001111 12356667777778999
Q ss_pred CEEEEcccCCh--------hHHHHHHHHHHHhCCCCeEEEecCCCCChH--HH-hhccCC------CCcEEEeccCCCCC
Q 009256 389 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN--IV-GEKTSS------QDRIIGAHFFSPAH 451 (539)
Q Consensus 389 DlVi~avpe~~--------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i-~~~~~~------~~r~vg~h~~~p~~ 451 (539)
|++|.|||++. .......+.|.++++++.+|+..|+..+-+ ++ ...+.. ...+.-.| +|..
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE~ 155 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPER 155 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCCc
Confidence 99999999652 222333467888999888877544433321 11 111111 01111111 1111
Q ss_pred ---------CCCeeeeecCCCCcHHHHHHHHHHHHHcC-ceeEEEcC-----cccchhhcch---HHHHHHHHHHHHc-C
Q 009256 452 ---------VMPLLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGN-----CTGFAVNRAF---FPYSQSARLLVSL-G 512 (539)
Q Consensus 452 ---------~~~~vei~~~~~t~~e~~~~~~~l~~~lg-~~~v~v~~-----~~g~v~nrl~---~~~~~Ea~~l~~~-G 512 (539)
...+-.++.|. +++..+.+..+++.+. ..++++.+ ...++.|-++ .+++||+..+++. |
T Consensus 156 v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~G 233 (425)
T PRK15182 156 INPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLN 233 (425)
T ss_pred CCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11111244442 5788899999999986 34566644 2224445443 3788999999988 9
Q ss_pred CCHHHHHHHH
Q 009256 513 VDVFRIDSAI 522 (539)
Q Consensus 513 ~~~~~id~a~ 522 (539)
+|+.++-+++
T Consensus 234 iD~~~v~~a~ 243 (425)
T PRK15182 234 IDTEAVLRAA 243 (425)
T ss_pred cCHHHHHHHh
Confidence 9999998887
No 151
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.47 E-value=1.6e-12 Score=136.97 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=119.0
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+||| +|.||.++|..|.++|++|++||++++........ .| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~----------~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE----------LG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH----------cC-------------CeeccCHHHHhc
Confidence 3799997 79999999999999999999999998765433211 11 2233344 5678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccCCCCcEEEeccCCCC----CCCCeeeeec
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA----HVMPLLEIVR 460 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~~~~r~vg~h~~~p~----~~~~~vei~~ 460 (539)
+||+||.|+|. .....++.++.+.++++++|++.+|. .+...+....+...++++.||+..| ..+..+.+++
T Consensus 58 ~aDvVIlavp~--~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPI--NVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCH--HHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 99999999994 44568889999999999998877763 4445566655555689999986544 3456677888
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+..++++.++.+.++++.+|..++.+.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999998874
No 152
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.45 E-value=2.4e-13 Score=123.84 Aligned_cols=129 Identities=18% Similarity=0.284 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcCccc
Q 009256 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (539)
Q Consensus 31 ~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~ 110 (539)
.+.+.+.+.|+.+..++.+ .+.|.+.|+ ++. ....+. +.|..++||||+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG------~~~----------------~~~~i~-~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGG------DVF----------------AGLAIY-NALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEEEcchHH
Confidence 5677888889988877444 344444332 221 112455 6688999999999999999
Q ss_pred cchhHhhhccCEEEeeCCceEeCCcccCCCCCCcc---------------hhhccccccC--HHHHHHHHHcCCCCCHHH
Q 009256 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE 173 (539)
Q Consensus 111 GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g---------------~~~~l~r~vG--~~~a~~l~l~g~~~~a~e 173 (539)
|+|+.++++||+|+++++++|+++....+..+... ....+.+..| .....+++.++..++++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 99999999999999999999999877655544322 1233677788 677788888888999999
Q ss_pred HHHcCCccee
Q 009256 174 GWKLGLIDAV 183 (539)
Q Consensus 174 A~~~Glv~~v 183 (539)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999986
No 153
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.44 E-value=2.3e-12 Score=130.29 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=113.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.+++|+|||+|.||.+++..|.+.|+ +|++||++++..+.+.+ .|.. .....+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~-----------~~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLG-----------DRVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCC-----------ceecCCHHH
Confidence 35789999999999999999999985 89999999987665422 1211 0112233 5
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccCCCCcEEEeccCCCCCC---------
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV--------- 452 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~~~~r~vg~h~~~p~~~--------- 452 (539)
.+++||+||+|+|.. ....+++++.++++++++|++.++.. ....+........++++.||+.++..
T Consensus 63 ~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 578999999999953 45677888888888888876544432 12233344444458999999875432
Q ss_pred ---CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 453 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 453 ---~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+..+.+++...++++.++.+.++++.+|..++++.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345667777889999999999999999998875
No 154
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.43 E-value=1.5e-12 Score=123.61 Aligned_cols=154 Identities=26% Similarity=0.335 Sum_probs=108.2
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHH
Q 009256 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (539)
Q Consensus 15 v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (539)
|++|+++.+ ++ ...++|.++|+.+..|+++++|||++. |.|+++... .++. ++|
T Consensus 2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i 55 (207)
T TIGR00706 2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL 55 (207)
T ss_pred EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence 566666654 11 235789999999999999999999974 677766432 2344 557
Q ss_pred HhCC--CcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCccc------------CCCCCC---------cc-----h
Q 009256 95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FG-----G 146 (539)
Q Consensus 95 ~~~~--~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g-----~ 146 (539)
.+++ |||||.++|.|.|+|+.|+++||.+++++++.|+...+. +|+-+. .+ .
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 7776 999999999999999999999999999999987653332 333210 00 0
Q ss_pred h----hcc-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 009256 147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (539)
Q Consensus 147 ~----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (539)
+ ..+ .|.+......+ ++.|+.+++++|++.||||++...+++.+...+
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 0 001 12223233333 468899999999999999999988877655544
No 155
>PLN02256 arogenate dehydrogenase
Probab=99.42 E-value=3.1e-12 Score=128.12 Aligned_cols=152 Identities=11% Similarity=0.013 Sum_probs=110.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-C
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~ 386 (539)
++|+|||+|.||.+++..|.+.|++|++||+++.. +.+. +.| +...++. +.+ .
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~~ 91 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCEE 91 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhhC
Confidence 58999999999999999999999999999998632 2111 111 1122333 333 4
Q ss_pred CcCEEEEcccCChhHHHHHHHHH-HHhCCCCeEEEecCC--CCChHHHhhccCCCCcEEEeccCCCCCCC------Ceee
Q 009256 387 DVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTS--TIDLNIVGEKTSSQDRIIGAHFFSPAHVM------PLLE 457 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l-~~~~~~~~ii~s~ts--~~~~~~i~~~~~~~~r~vg~h~~~p~~~~------~~ve 457 (539)
++|+||+|+|. .....+++++ ..+++++++|++.+| +.+...+...++...++++.||+.++... ..+-
T Consensus 92 ~aDvVilavp~--~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~ 169 (304)
T PLN02256 92 HPDVVLLCTSI--LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFV 169 (304)
T ss_pred CCCEEEEecCH--HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEE
Confidence 69999999994 4567778888 567889999988777 35556666666555579999998877543 1111
Q ss_pred eecC----CCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 458 IVRT----ERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 458 i~~~----~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.+. +.++++.++.++++++.+|.+++.+.
T Consensus 170 ~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 170 YDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 1221 56788999999999999999999884
No 156
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.42 E-value=4e-12 Score=129.69 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=126.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
|+||+|||+|.||..+|..|+++|++|++||++++.++.+.+..... ... .+ .. ....+...++. +.++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~-~~-~~------~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP--RYL-PG-IK------LPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--ccC-CC-Cc------CCCCeEEeCCHHHHHh
Confidence 35899999999999999999999999999999998877664321000 000 00 00 00123344555 4678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-------HHhhccCC--CCcEEEeccCCC----CCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSS--QDRIIGAHFFSP----AHVM 453 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-------~i~~~~~~--~~r~vg~h~~~p----~~~~ 453 (539)
+||+||.|+|. ...+.++.++.+++++++++++.++++... .+.+.... +..++.. |..+ ....
T Consensus 71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~-P~~~~~~~~g~~ 147 (325)
T PRK00094 71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSG-PSFAKEVARGLP 147 (325)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEEC-ccHHHHHHcCCC
Confidence 99999999995 456788888998888898888776555542 22222221 1111111 1110 0111
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccc---------------------hhhcc----hHHHHHHHHHH
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF---------------------AVNRA----FFPYSQSARLL 508 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~---------------------v~nrl----~~~~~~Ea~~l 508 (539)
.++.+.. .+.+.++++.++++..|..+++..+..|. +.|+. ....++|++.+
T Consensus 148 ~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 148 TAVVIAS---TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred cEEEEEe---CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 2233322 27889999999999999887776554331 12333 23455699999
Q ss_pred HHc-CCCHHHHHHHH
Q 009256 509 VSL-GVDVFRIDSAI 522 (539)
Q Consensus 509 ~~~-G~~~~~id~a~ 522 (539)
++. |++++.+....
T Consensus 225 a~~~G~d~~~~~~~~ 239 (325)
T PRK00094 225 GVALGANPETFLGLA 239 (325)
T ss_pred HHHhCCChhhhhccc
Confidence 977 99988886654
No 157
>PRK07680 late competence protein ComER; Validated
Probab=99.38 E-value=1.6e-11 Score=122.02 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=110.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+|+|||+|.||.+++..|.++|+ +|++||+++++.+.+.+.. ..+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~----------------------~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY----------------------PGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc----------------------CCeEEECCHHHH
Confidence 69999999999999999999984 7999999998766542210 012233344 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCee-eeecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL-EIVRTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~v-ei~~~~~ 463 (539)
+.++|+||.|+| +.....+++++.++++++.+|++.+++++...+...+. .+++..+|..+......+ -++.++.
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999997 55567788888888888888889898898888887664 245555554332221222 2345666
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.+++..+.+++++..+|. ++.+.+
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~e 159 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIEE 159 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEECh
Confidence 688889999999999995 555543
No 158
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.38 E-value=6.1e-12 Score=121.86 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=125.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
++||+|||+|+||.+|+..|.++| .+|++.++++++.+.+.+++ +... +++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~----------------------g~~~-~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY----------------------GVVT-TTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc----------------------CCcc-cCcHH
Confidence 358999999999999999999999 59999999999877543321 1222 3343
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee-cC
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT 461 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~-~~ 461 (539)
+.+..+|+||+|+. +.....++.++.+ ..++.+|+|...+++++.+...+. ..+++...|+.|...+..+..+ .+
T Consensus 58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~ 133 (266)
T COG0345 58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN 133 (266)
T ss_pred HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence 67788999999995 6778888888887 778889999999999999999887 6789999999988887777655 55
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
...+++..+.+..+|+.+|+...+-
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCeEEec
Confidence 7889999999999999999876554
No 159
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.37 E-value=4.9e-12 Score=133.66 Aligned_cols=200 Identities=17% Similarity=0.209 Sum_probs=133.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
++||+|||+|.+|..+|..|+++ |++|++||+++++++.+.+.. +..+..++..+ .-.+++++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 35899999999999999999998 478999999999998875432 11222222211 1124788888
Q ss_pred c-cCCCCcCEEEEcccCC-------------hhHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhcc---------
Q 009256 382 Y-SEFKDVDMVIEAVIES-------------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKT--------- 435 (539)
Q Consensus 382 ~-~~~~~aDlVi~avpe~-------------~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~--------- 435 (539)
+ +++++||++|+|||.. ......+.++|.++++++.+|+. .|+.++. .+...+
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f 150 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINF 150 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCe
Confidence 7 5799999999999633 33567778889999999887764 3344433 222211
Q ss_pred ---CCCCcEEEec----cCCCCCCCCeeeeecCCC--CcHHHHHHHHHHHHHcCc-eeEEEc-----Ccccchhhcch--
Q 009256 436 ---SSQDRIIGAH----FFSPAHVMPLLEIVRTER--TSAQVILDLMTVGKIIKK-VPVVVG-----NCTGFAVNRAF-- 498 (539)
Q Consensus 436 ---~~~~r~vg~h----~~~p~~~~~~vei~~~~~--t~~e~~~~~~~l~~~lg~-~~v~v~-----~~~g~v~nrl~-- 498 (539)
..|+++.-.. +.+|+.+ |+++.. +.+++.+.++.++..+-+ .++.+. +...++.|.+.
T Consensus 151 ~v~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~ 225 (473)
T PLN02353 151 QILSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQ 225 (473)
T ss_pred EEEECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHH
Confidence 1222221111 2344432 445532 236788999999998753 455543 34456667553
Q ss_pred -HHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 499 -FPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 499 -~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
.+++||...+++. |+++.+|-+++
T Consensus 226 ~Iaf~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 226 RISSVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 4889999999988 99999999998
No 160
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.37 E-value=1.5e-11 Score=123.20 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=125.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||.++|..|...|++|++++++.++.....+ +.| +... +. +.++.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~----------~~G-------------~~~~-s~~eaa~~ 73 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAE----------ADG-------------FEVL-TVAEAAKW 73 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHH----------HCC-------------CeeC-CHHHHHhc
Confidence 58999999999999999999999999999887554322211 111 2222 33 67889
Q ss_pred cCEEEEcccCChhHHHHHH-HHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCC-------CCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~-~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~-------~~~~vei~ 459 (539)
||+|+.++|+... ..++ +++.+.++++++| +..++..+.......+...+++-..|..|.+ .+..+...
T Consensus 74 ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l 150 (330)
T PRK05479 74 ADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL 150 (330)
T ss_pred CCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence 9999999995543 5676 7799999999887 7788888887765555555788888888887 44333322
Q ss_pred --cCCCCcHHHHHHHHHHHHHcCceeE-----EEcCcc--cc------hhhcchHHHHHHHHHHH-HcCCCHHH
Q 009256 460 --RTERTSAQVILDLMTVGKIIKKVPV-----VVGNCT--GF------AVNRAFFPYSQSARLLV-SLGVDVFR 517 (539)
Q Consensus 460 --~~~~t~~e~~~~~~~l~~~lg~~~v-----~v~~~~--g~------v~nrl~~~~~~Ea~~l~-~~G~~~~~ 517 (539)
.....+.+..+.+..++..+|..+. ..++.. -+ +.|- +..++..++..+ +.|++|+.
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg-~~~l~~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGG-LTELIKAGFETLVEAGYQPEM 223 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhH-HHHHHHHHHHHHHHcCCCHHH
Confidence 3445568999999999999998865 333322 11 2222 234555555554 55998864
No 161
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=3.7e-11 Score=119.53 Aligned_cols=203 Identities=17% Similarity=0.153 Sum_probs=134.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHH---HHHHhhcccccCCccCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK---ANNALKMLKGVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~ 385 (539)
.+|+|||+|.+|.++|..++++|++|+++|+|+.+++.+....... .+ .+.++ .....++++.+++.+.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i----~e---~~~~~~v~~~v~~g~lraTtd~~~l 82 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYI----EE---PDLDEVVKEAVESGKLRATTDPEEL 82 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCccee----ec---CcHHHHHHHHHhcCCceEecChhhc
Confidence 6899999999999999999999999999999999998875421000 00 01111 11222568889999889
Q ss_pred CCcCEEEEcccC--------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhc-------cCCCCcEEEeccCC
Q 009256 386 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEK-------TSSQDRIIGAHFFS 448 (539)
Q Consensus 386 ~~aDlVi~avpe--------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~-------~~~~~r~vg~h~~~ 448 (539)
+.||++|+|||. |+.......+.|.++++++.+++.-|++.|-+ ++... +..+..|--.| .
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay--s 160 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY--S 160 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee--C
Confidence 999999999985 56667777888999999999887655554432 22221 22222221111 2
Q ss_pred CCCCCC---ee------eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcc-----cchhhcc---hHHHHHHHHHHHHc
Q 009256 449 PAHVMP---LL------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNRA---FFPYSQSARLLVSL 511 (539)
Q Consensus 449 p~~~~~---~v------ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~-----g~v~nrl---~~~~~~Ea~~l~~~ 511 (539)
|-+..| +. .+++| .+|+..+.+..|++.+-...+.+.+.. ...=|-. -.++.||-..++++
T Consensus 161 PERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~ 238 (436)
T COG0677 161 PERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNA 238 (436)
T ss_pred ccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 222211 11 24444 489999999999999877766665422 2222321 24788998777766
Q ss_pred -CCCHHHHHHHH
Q 009256 512 -GVDVFRIDSAI 522 (539)
Q Consensus 512 -G~~~~~id~a~ 522 (539)
|++.-++-++-
T Consensus 239 ~GIdvwevIeaA 250 (436)
T COG0677 239 MGIDVWEVIEAA 250 (436)
T ss_pred hCCcHHHHHHHh
Confidence 99766555544
No 162
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.36 E-value=9e-12 Score=123.83 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=119.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
|++|+|||+|.||.+++..|.++| ++|++|+++++ +.+..... . .....+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~----------~------------~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDK----------Y------------PTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHH----------c------------CCeEEeCCH
Confidence 468999999999999999999998 78999998753 22222110 0 112223343
Q ss_pred -cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee-c
Q 009256 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 460 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~-~ 460 (539)
+.+.++|+||+|+| +.....++.++.++++++.+|+|...+++..++...++. .+++.+.|+.|...+..+..+ .
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 55789999999999 555778888898888888888999999999999887753 479999998888777776655 5
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEE
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVV 485 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~ 485 (539)
++..+++..+.++.+|..+|....+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6677999999999999999987644
No 163
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.35 E-value=2.4e-11 Score=119.73 Aligned_cols=179 Identities=11% Similarity=0.096 Sum_probs=122.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCe---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
+|+|||+|.||.+|+..|.+.|++ +.+||+++++.+.+.+.. .......+. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~----------------------~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF----------------------PKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc----------------------CCceEeCCHHHHH
Confidence 799999999999999999999864 578999988876653311 112233344 456
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCc
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~ 465 (539)
.+||+||+|+| ++....++.++. +.++.++++...+.+...+...+....+++..+|..|......+..+...
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 88999999999 444566766662 45777888888999999998877655577788887666544444444321
Q ss_pred HHHHHHHHHHHHHcCceeEEEcC--cc------cchhhcchHHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 466 AQVILDLMTVGKIIKKVPVVVGN--CT------GFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 466 ~e~~~~~~~l~~~lg~~~v~v~~--~~------g~v~nrl~~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
.+.++++++.+|..++...+ .. ++..| ++.++.++....++ |+++++..+++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 25789999999988764322 11 12222 22345566656554 99988866665
No 164
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.32 E-value=6e-11 Score=115.98 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC---e-EEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
.||+|||+|.||.+++..+.++|+ + |+++++ ++++.+.+.+.. .+..+++.
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 61 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-----------------------NVSTTTDWK 61 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-----------------------CcEEeCChH
Confidence 589999999999999999998873 3 777887 466655543210 12223444
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecC
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT 461 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~ 461 (539)
+.+.++|+||.++|. ...+.+++++.++++ +.+|++.+.+++...+...+....+++..||..+...+..+. ++..
T Consensus 62 ~~~~~~DiViiavp~--~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~ 138 (245)
T PRK07634 62 QHVTSVDTIVLAMPP--SAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMG 138 (245)
T ss_pred HHHhcCCEEEEecCH--HHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeC
Confidence 557899999999994 446788888887766 468889999999999988876555778888876665544433 3345
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEE
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVV 485 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~ 485 (539)
...+++..+.++++++.+|..++.
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 567899999999999999998864
No 165
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.32 E-value=9.1e-12 Score=119.54 Aligned_cols=148 Identities=22% Similarity=0.222 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
+.-+...+.+|.+.|+++..|+++++|||+..++.| ++.+++++ .+.+ +.+...+|||||.+
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el----------------~~~i-~~~~~~~kpVia~~ 85 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL----------------RQAL-ERFRASGKPVIAYA 85 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH----------------HHHH-HHHHHhCCeEEEEe
Confidence 334577899999999999999999999999988877 66666654 2334 45677899999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCccc------------CCCCCC---------cchhhc-----------c---
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQR-----------L--- 150 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~~~~-----------l--- 150 (539)
+| |.+||+.|+++||.+++.+++.|+..-+. +|+-+. .+..+. +
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~ 164 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQAL 164 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHH
Confidence 98 88999999999999999999999875332 233221 011110 0
Q ss_pred --------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHH
Q 009256 151 --------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193 (539)
Q Consensus 151 --------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 193 (539)
.|.+..... +-+..|+.+++++|++.||||++...+++.+..
T Consensus 165 l~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l 220 (222)
T cd07018 165 LDSLWDQYLADVAASRGLSPDAL-EALIDLGGDSAEEALEAGLVDGLAYRDELEARL 220 (222)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHH-HHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHHH
Confidence 111222222 234559999999999999999999888776543
No 166
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.30 E-value=2.7e-11 Score=123.62 Aligned_cols=137 Identities=13% Similarity=0.106 Sum_probs=103.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+ |.||+++|..|.+. |++|++||++.+. ..+. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 48999999 99999999999864 8999999985211 1111 457
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHh---CCCCeEEEecCCCCC--hHHHhhccCCCCcEEEeccCCCCCC-----CCe
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV-----MPL 455 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~---~~~~~ii~s~ts~~~--~~~i~~~~~~~~r~vg~h~~~p~~~-----~~~ 455 (539)
++||+||.|+| ......+++++.++ ++++++|++.+|... +..+. ....+|+|.||+..++. +..
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~---~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAML---ASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHHH---hcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 66677888998876 789999987777643 33332 22346999999887753 334
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.+++. ..++.+++++.+++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 445555 345567899999999999998884
No 167
>PLN02712 arogenate dehydrogenase
Probab=99.29 E-value=1.1e-10 Score=128.66 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=108.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
.++|+|||+|.||.++|..|.+.|++|++||++... +.+. +.| +...++. +.+.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~~ 423 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLCE 423 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHHh
Confidence 458999999999999999999999999999998542 2211 111 1223344 3343
Q ss_pred -CcCEEEEcccCChhHHHHHHHHHHH-hCCCCeEEEecCCC--CChHHHhhccCCCCcEEEeccCCCCCCCC--------
Q 009256 387 -DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-------- 454 (539)
Q Consensus 387 -~aDlVi~avpe~~~~~~~~~~~l~~-~~~~~~ii~s~ts~--~~~~~i~~~~~~~~r~vg~h~~~p~~~~~-------- 454 (539)
.||+||.|+| ......++.++.. .++++++|++.+|+ .+...+....+...++++.||+.++....
T Consensus 424 ~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~ 501 (667)
T PLN02712 424 EHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAF 501 (667)
T ss_pred cCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhh
Confidence 5899999999 4456677777765 57889999887776 44555555555555799999988876531
Q ss_pred ee--eeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 455 LL--EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 455 ~v--ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
++ -++.++....+.++.+.+++..+|.+++.+.
T Consensus 502 lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 502 VFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 11 1223444566677788899999999998884
No 168
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.29 E-value=3e-11 Score=121.27 Aligned_cols=148 Identities=12% Similarity=0.092 Sum_probs=111.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|+|||+|+||.++|..|.+.|++|+++++. ++..+.+. +.| +...+..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 47999999999999999999999998876654 33433331 111 222222266789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCC-------CCeee-ee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLE-IV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~-------~~~ve-i~ 459 (539)
||+|+.++|++.. ...+.+++.+.++++. ++|...++++..+...++...+++...|..|.+. +..+. ++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 9999999995533 4566677888888876 5678889999988776765567999999999874 65553 43
Q ss_pred -cCCCCcHHHHHHHHHHHHHcCce
Q 009256 460 -RTERTSAQVILDLMTVGKIIKKV 482 (539)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lg~~ 482 (539)
.+...+.+..+.+..++..+|..
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCC
Confidence 56667889999999999999988
No 169
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.28 E-value=2.5e-11 Score=123.97 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=118.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||..|+++||+|++|+++++..+.+.+...+.. .+. +.. ...++..++++ +.+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~--~~~-g~~-------~~~~~~~~~~~~e~~~~ 74 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENRE--YLP-GVA-------LPAELYPTADPEEALAG 74 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccc--cCC-CCc-------CCCCeEEeCCHHHHHcC
Confidence 48999999999999999999999999999999988776643211100 000 100 00123345555 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC-----hHHHhhccCC--CCc--EEEeccCCCCCC---CCe
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDR--IIGAHFFSPAHV---MPL 455 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~-----~~~i~~~~~~--~~r--~vg~h~~~p~~~---~~~ 455 (539)
||+||+++|++. .++ +.+.++++.++++.++++. ...++..+.. ..+ +++ .|..+... .+.
T Consensus 75 aD~Vi~~v~~~~--~~~----v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~~ 147 (328)
T PRK14618 75 ADFAVVAVPSKA--LRE----TLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLPA 147 (328)
T ss_pred CCEEEEECchHH--HHH----HHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCCe
Confidence 999999999663 233 3355667777777777654 2233333321 011 222 11111111 012
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc----------------c-----hhhcc----hHHHHHHHHHHHH
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------F-----AVNRA----FFPYSQSARLLVS 510 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g----------------~-----v~nrl----~~~~~~Ea~~l~~ 510 (539)
..++.+ .+++.+++++++++..|..+++..|..| . +.|++ ....+.|+..+++
T Consensus 148 ~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~ 225 (328)
T PRK14618 148 ATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGV 225 (328)
T ss_pred EEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 222222 3788999999999999988875433222 1 11222 2344569999997
Q ss_pred c-CCCHHHHHHHH
Q 009256 511 L-GVDVFRIDSAI 522 (539)
Q Consensus 511 ~-G~~~~~id~a~ 522 (539)
. |++++.+....
T Consensus 226 ~~G~~~~~~~~~~ 238 (328)
T PRK14618 226 ALGAEEATFYGLS 238 (328)
T ss_pred HhCCCccchhcCc
Confidence 7 99988877665
No 170
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.27 E-value=1.1e-11 Score=122.21 Aligned_cols=165 Identities=18% Similarity=0.171 Sum_probs=114.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||+++|..|+++||+|++|.++++.++++.+.. .-.+++..-.+. ..+.+++|+ +++++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~--~N~~yLp~i~lp--------~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETR--ENPKYLPGILLP--------PNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcC--cCccccCCccCC--------cccccccCHHHHHhc
Confidence 5899999999999999999999999999999999988876541 112233322222 467888888 77888
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH------HHh-hccCCCCcEEEeccCCCCCC-------C
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IVG-EKTSSQDRIIGAHFFSPAHV-------M 453 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~------~i~-~~~~~~~r~vg~h~~~p~~~-------~ 453 (539)
||+|+.++| .+..+.+++++..++++++++++.++++... ++. +.++. ..+ + +...|.. .
T Consensus 72 ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~-~~~-~--vLSGPs~A~EVa~g~ 145 (329)
T COG0240 72 ADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPD-NPI-A--VLSGPSFAKEVAQGL 145 (329)
T ss_pred CCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCC-CeE-E--EEECccHHHHHhcCC
Confidence 999999999 6668899999988899999999888877654 222 22221 111 1 1222211 1
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
+...++.+ .+++..+.++.+|..=..+++...|..|
T Consensus 146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 12122222 3788888888888875666666677655
No 171
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.24 E-value=8.2e-11 Score=123.81 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=122.0
Q ss_pred CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC---CCCcCEEEEc
Q 009256 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE---FKDVDMVIEA 394 (539)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---~~~aDlVi~a 394 (539)
||..||.+|+++||+|++|||++++.+.+.+.. +. . ..+....++ +. ++.+|+||.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~----------g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEE----------GK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh----------CC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 899999999999999999999999988764310 10 0 113334444 32 3358999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH--hhccC-CCCcEEEeccCCCC---CCCCeeeeecCCCCcHHH
Q 009256 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRTERTSAQV 468 (539)
Q Consensus 395 vpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i--~~~~~-~~~r~vg~h~~~p~---~~~~~vei~~~~~t~~e~ 468 (539)
+|.+..+. .++..+.+++.++.+|++.+++.+.... ...+. ..-+|+++.....+ ..++ .-++.| ++++
T Consensus 62 v~~g~~v~-~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG---~~~a 136 (459)
T PRK09287 62 VKAGAPVD-AVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGG---QKEA 136 (459)
T ss_pred CCCchHHH-HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeC---CHHH
Confidence 99876655 4557888999999999877765554432 22232 22234444332222 2233 334455 8999
Q ss_pred HHHHHHHHHHcCcee-------EEEcCc-ccc----hhhcchHHH---HHHHHHHHH-c-CCCHHHHHHHHH
Q 009256 469 ILDLMTVGKIIKKVP-------VVVGNC-TGF----AVNRAFFPY---SQSARLLVS-L-GVDVFRIDSAIR 523 (539)
Q Consensus 469 ~~~~~~l~~~lg~~~-------v~v~~~-~g~----v~nrl~~~~---~~Ea~~l~~-~-G~~~~~id~a~~ 523 (539)
++.++++++.++.++ .++++. .|. +.|-+.+.. +.|++.+++ . |++++++-+++.
T Consensus 137 ~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 137 YELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred HHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999886 788763 332 335554443 459999998 3 899999888873
No 172
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.23 E-value=1.7e-10 Score=130.57 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=116.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+++|+|||+|.||.+++..+.+.| ++|++||+++++++.+.+ .|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS-----------LGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH-----------CCCCC-----------cccCCHHHH
Confidence 578999999999999999999998 489999999887665422 12110 112233 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccC-CCCcEEEeccCCCCC----------
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH---------- 451 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~-~~~r~vg~h~~~p~~---------- 451 (539)
+.++|+||+|+|. .....+++++.++++++++|++.++.. ....+...+. .+.|+++.||+..+.
T Consensus 61 ~~~aDvVilavp~--~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPV--LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 7899999999994 467888899999888888776544432 2445555443 356899999975332
Q ss_pred --CCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 452 --~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
..+.+.+++...++++.++.++++++.+|..++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234456788888899999999999999999998884
No 173
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.23 E-value=6.7e-11 Score=119.57 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=110.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||..|+++||+|++|+|++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 47999999999999999999999999999998530 11 44678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHh-CCCCeEEEecCCCCChHHH-------hhccCCCCcEEEeccCCCCC-------C
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIV-------GEKTSSQDRIIGAHFFSPAH-------V 452 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~-~~~~~ii~s~ts~~~~~~i-------~~~~~~~~r~vg~h~~~p~~-------~ 452 (539)
+|+||.++|.+ ..+.+++++.++ ++++++++++++++.+... ...... .+++.+ ..|.. .
T Consensus 48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~i--~gp~~a~ei~~~~ 122 (308)
T PRK14619 48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVVL--SGPNLSKEIQQGL 122 (308)
T ss_pred CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEEE--ECCCcHHHHhcCC
Confidence 99999999963 566777888764 6788888887765554321 111111 122210 11110 0
Q ss_pred CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccc---------------------hhhcch----HHHHHHHHH
Q 009256 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF---------------------AVNRAF----FPYSQSARL 507 (539)
Q Consensus 453 ~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~---------------------v~nrl~----~~~~~Ea~~ 507 (539)
...+-++.+ +.+.++.+++++...+..+++.+|..|- +.|+.. ...+.|++.
T Consensus 123 ~~~~~~ag~---~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~ 199 (308)
T PRK14619 123 PAATVVASR---DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIR 199 (308)
T ss_pred CeEEEEEeC---CHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 112222233 7899999999999999888876664441 223332 234469999
Q ss_pred HHHc-CCCHHHHHH
Q 009256 508 LVSL-GVDVFRIDS 520 (539)
Q Consensus 508 l~~~-G~~~~~id~ 520 (539)
+++. |++++.+..
T Consensus 200 l~~~~G~~~~t~~~ 213 (308)
T PRK14619 200 VGTHLGAQTETFYG 213 (308)
T ss_pred HHHHhCCCcccccc
Confidence 9977 887765533
No 174
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.22 E-value=2.4e-10 Score=109.69 Aligned_cols=163 Identities=16% Similarity=0.115 Sum_probs=107.7
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+||| +|.||.+++..|+++|++|+++++++++.+...+..... ....+ .. ..+..+++.+++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccC-CC--------ceEEEeChHHHHhc
Confidence 3799997 899999999999999999999999998877654432110 00001 00 01122233367889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-----------------HHHhhccCCCCcEEEeccCCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPA 450 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-----------------~~i~~~~~~~~r~vg~h~~~p~ 450 (539)
+|+||.|+| ......+++++.+.++. ++|++.+.++.. ..++..++...+++...++.+.
T Consensus 69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998 55566777778776654 778787777665 2345555432567776543322
Q ss_pred CCC-------CeeeeecCCCCcHHHHHHHHHHHHHc-CceeEEEcC
Q 009256 451 HVM-------PLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 488 (539)
Q Consensus 451 ~~~-------~~vei~~~~~t~~e~~~~~~~l~~~l-g~~~v~v~~ 488 (539)
... +....+.|+ ++++.+.+..|.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 111 111233443 677899999999999 999988875
No 175
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.20 E-value=3e-10 Score=116.73 Aligned_cols=196 Identities=10% Similarity=0.046 Sum_probs=119.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++||+|||+|.||..+|..|+++|++|++||+++. .+...+. . ......+..+......++..+++.+.+.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~---g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAH---G----LTLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhc---C----ceeecCCCcceecccceeEeccChhhccC
Confidence 45899999999999999999999999999999653 2322110 0 00000000000000123444555567789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhhccCCCCcEEEeccCC----CCCC---CCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFFS----PAHV---MPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~i~~~~~~~~r~vg~h~~~----p~~~---~~~vei~ 459 (539)
+|+||+|++... ...+++++.++++++++|++.++++.. ..++..+.....+.+.+++. +|.. ...-.+.
T Consensus 74 ~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~ 151 (341)
T PRK08229 74 ADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALA 151 (341)
T ss_pred CCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceE
Confidence 999999998543 467788899999999988887777764 34555554322233333321 1110 0000111
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcCccc-----chhhcc--h---------------------HHHHHHHHHHHHc
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRA--F---------------------FPYSQSARLLVSL 511 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g-----~v~nrl--~---------------------~~~~~Ea~~l~~~ 511 (539)
-+ +.+.++++.++++..|..+.+.+|..+ ++.|-+ + ...+.|++.+++.
T Consensus 152 ~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a 228 (341)
T PRK08229 152 IE---ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKA 228 (341)
T ss_pred ec---CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 12 124568899999999988888887543 344421 1 1445688888866
Q ss_pred -CCCHH
Q 009256 512 -GVDVF 516 (539)
Q Consensus 512 -G~~~~ 516 (539)
|++++
T Consensus 229 ~Gi~~~ 234 (341)
T PRK08229 229 AGIRPA 234 (341)
T ss_pred cCCCcc
Confidence 88653
No 176
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.19 E-value=6.3e-10 Score=109.59 Aligned_cols=143 Identities=16% Similarity=0.151 Sum_probs=110.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||+|||+|+||++|+..|.++|. +++++|+++++.. .....+. +.
T Consensus 5 kI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~------------------------------~~~~~~~~~~ 54 (260)
T PTZ00431 5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP------------------------------FVYLQSNEEL 54 (260)
T ss_pred EEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC------------------------------eEEeCChHHH
Confidence 79999999999999999999873 4999998865310 0112222 45
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~~~ 463 (539)
+.+||+||.|+| +.....+++++.++++++ +|+|..+++..+.+...++...+++...|..|...+..+. +++...
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999998 666889999998887764 5678888999988887766555677788877776665544 456667
Q ss_pred CcHHHHHHHHHHHHHcCceeEE
Q 009256 464 TSAQVILDLMTVGKIIKKVPVV 485 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~ 485 (539)
.+++..+.++.+|+.+|...++
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 7889999999999999987754
No 177
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.15 E-value=4.9e-12 Score=132.79 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=117.6
Q ss_pred eEEEEcCCCCcHHHHH--HH----HHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 310 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~--~l----~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
||+|||+|.||.+++. .+ ..+|++|++||++++.++.....+...+. ..... .++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~~~--------~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELGAP--------LKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcCCC--------eEEEEeCCHH
Confidence 7999999999998766 34 44588999999999998887665533322 11111 357778887
Q ss_pred cCCCCcCEEEEccc----------CChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCC--CCcEEEeccCCCC
Q 009256 383 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA 450 (539)
Q Consensus 383 ~~~~~aDlVi~avp----------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~--~~r~vg~h~~~p~ 450 (539)
+++++||+||++++ ++..+|..+++++.+.+++++++.+++|...+.+++..+.. | +.+.+||.||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 78999999999998 35788888999999999999999999999888888877653 6 88999999999
Q ss_pred CCC-----CeeeeecCCCCcHHHHHHHHHHHHHcCce
Q 009256 451 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKV 482 (539)
Q Consensus 451 ~~~-----~~vei~~~~~t~~e~~~~~~~l~~~lg~~ 482 (539)
..+ +..+ ...-++..........+.+.+|..
T Consensus 149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCC
Confidence 654 2222 122222323555666777778864
No 178
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.15 E-value=3.1e-10 Score=104.46 Aligned_cols=145 Identities=26% Similarity=0.355 Sum_probs=101.4
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
..|+++. .+++...+.+.++|+++.+++ ++.|++.=. |.|+++. ....++ +.|.
T Consensus 2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~----------------~~~~I~-~~l~ 55 (178)
T cd07021 2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVD----------------SALEIV-DLIL 55 (178)
T ss_pred EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHH----------------HHHHHH-HHHH
Confidence 4555554 366778888999999998876 677777422 1122221 123455 6789
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchh--------hc------cccccC--HHHH
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT--------QR------LPRLVG--LSKA 159 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~--------~~------l~r~vG--~~~a 159 (539)
.+++|||+.|+|.|.++|+.++++||++++++++.|+.++. ++..|+. .. +...-| ...+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a 131 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA 131 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999998844 3333331 00 111112 3445
Q ss_pred HHHHHcC-------------CCCCHHHHHHcCCcceecCc-chHH
Q 009256 160 IEMMLLS-------------KSITSEEGWKLGLIDAVVTS-EELL 190 (539)
Q Consensus 160 ~~l~l~g-------------~~~~a~eA~~~Glv~~vv~~-~~l~ 190 (539)
..|+-.. -.++++||++.|++|.+.+. ++|.
T Consensus 132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 5555544 37999999999999999854 4443
No 179
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.13 E-value=1.3e-09 Score=100.79 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=105.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
|++++|+|.|+||+++|..|++.||+|++-.++.+ +.+...+.+. ..++..+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~---------------------~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG---------------------PLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc---------------------cccccCChHHHHh
Confidence 56899999999999999999999999999966544 4444433221 2345555558889
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC----------------hH-HHhhccCCCCcEEEe-c---
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LN-IVGEKTSSQDRIIGA-H--- 445 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~----------------~~-~i~~~~~~~~r~vg~-h--- 445 (539)
.||+||.++| ......+.+++.+.+. +.||++.+..+. .+ .+++.++.+ +++.. |
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 6667788899988776 677877665421 11 233344433 33322 1
Q ss_pred ---cCCCCCC-CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 446 ---FFSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 446 ---~~~p~~~-~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
+-+-++. .+..-.++++ |.++.+.+.+|.+.+|..++-++.
T Consensus 136 a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 1111122 3333344443 788999999999999999999875
No 180
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.13 E-value=2.6e-11 Score=109.96 Aligned_cols=105 Identities=23% Similarity=0.225 Sum_probs=77.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
||+|||+|.||.++|..|+++|++|++|.++++.++.+.+...+ ...+... .....+..++|+ ++++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n-------~~~~~~~---~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQN-------PKYLPGI---KLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSE-------TTTSTTS---BEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCC-------CCCCCCc---ccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999888776543110 0001000 001356678888 778999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
|+||.++| ....+.+++++.+++++++++++.+.++
T Consensus 71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999 5557899999999999999999888887
No 181
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.12 E-value=1.5e-10 Score=107.67 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=75.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||+|.+|.++|..|+++||+|++||+|+++++.+.+.. +..++.++++. ...++++++++. +
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~--------~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKEN--------VSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHH--------HHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccc--------cccccchhhhhhhh
Confidence 5899999999999999999999999999999999988876431 11111111110 012577888888 5
Q ss_pred CCCCcCEEEEcccC--------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 384 ~~~~aDlVi~avpe--------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
++.+||++|+|||. |......+.+.|.++++++.+|+- .|++++.
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvppG 125 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPPG 125 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSSTT
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEEe
Confidence 58999999999975 445677888899999999988764 4455544
No 182
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.09 E-value=1.1e-09 Score=107.67 Aligned_cols=141 Identities=17% Similarity=0.138 Sum_probs=101.7
Q ss_pred HHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccCChh
Q 009256 323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400 (539)
Q Consensus 323 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe~~~ 400 (539)
+|+.|.++| ++|++||++++.++.+ .+.|..+. ..++.+.+++||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a-----------~~~g~~~~-----------~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAA-----------LELGIIDE-----------ASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHH-----------HHTTSSSE-----------EESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHH-----------HHCCCeee-----------ccCCHhHhcCCCEEEEcCC--HH
Confidence 578899998 7999999999987776 23343321 1111467899999999999 77
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccCCCCcEEEeccCCCC------------CCCCeeeeecCCCCcH
Q 009256 401 LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA 466 (539)
Q Consensus 401 ~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~~~~r~vg~h~~~p~------------~~~~~vei~~~~~t~~ 466 (539)
....+++++.++++++++|++.+|.. +...+....+...+|+|.||+.++ ..+..+.++++..+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 78899999999999999998776653 334555555556789999998776 2356778889999999
Q ss_pred HHHHHHHHHHHHcCceeEEEc
Q 009256 467 QVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.++.+..+++.+|.+++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999998873
No 183
>PLN02712 arogenate dehydrogenase
Probab=99.09 E-value=3e-09 Score=117.37 Aligned_cols=153 Identities=16% Similarity=0.106 Sum_probs=104.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~- 385 (539)
.++|+|||+|.||.++|..|.+.|++|++||++... +.+. +.| +...++. +.+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence 348999999999999999999999999999998543 2211 111 2223344 323
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHH-HhCCCCeEEEecCCCCC--hHHHhhccCCCCcEEEeccCCCCCCC-----Ceee
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLE 457 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~-~~~~~~~ii~s~ts~~~--~~~i~~~~~~~~r~vg~h~~~p~~~~-----~~ve 457 (539)
.+||+||.|+| ......++.++. ++++++++|++.+|... ...+...++....+++.||+..+... ....
T Consensus 107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 56999999999 455677778775 66888998887665432 23444445444469999998777521 1111
Q ss_pred ee-----cCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 458 IV-----RTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 458 i~-----~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+. +.+....+.+++++++++.+|.+++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 12 2222344667888899999999999884
No 184
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.07 E-value=1.6e-09 Score=106.11 Aligned_cols=147 Identities=17% Similarity=0.129 Sum_probs=95.3
Q ss_pred cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEEEEcccCC
Q 009256 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (539)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi~avpe~ 398 (539)
|.+||.+|+++||+|++||+|+++.+.... ....+.| ....++. +++++||+||.|+|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~------e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLW------KKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhh------HHHHHCC-------------CeecCCHHHHHhCCCEEEEecCCH
Confidence 789999999999999999999876542110 0112222 2334444 7789999999999966
Q ss_pred hhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhc----cC---CCCcEEEeccCCCCCC-CCeeeeec------CCCC
Q 009256 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK----TS---SQDRIIGAHFFSPAHV-MPLLEIVR------TERT 464 (539)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~----~~---~~~r~vg~h~~~p~~~-~~~vei~~------~~~t 464 (539)
..+.. ++..+.++++++++++.+ |++++..+... +. ..-.+..+||-.-|.. ..-.-++. -...
T Consensus 93 aaV~e-Vl~GLaa~L~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGTFS-IARTIIEHVPENAVICNT-CTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHHHH-HHHHHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 66554 457788899999988754 45555433322 22 2224555565433311 11111222 2235
Q ss_pred cHHHHHHHHHHHHHcCceeEEEc
Q 009256 465 SAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
++|.++++.++.+..|+.++.+.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 89999999999999999999873
No 185
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.07 E-value=4.8e-11 Score=99.07 Aligned_cols=48 Identities=38% Similarity=0.560 Sum_probs=45.5
Q ss_pred cchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccC
Q 009256 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCW 538 (539)
Q Consensus 491 g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~ 538 (539)
||++||++.++++||.+++++|+ ++++||+++ .++|+|+|||+++|.+
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~ 50 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLV 50 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHh
Confidence 89999999999999999999995 999999999 6799999999999975
No 186
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.06 E-value=3e-10 Score=94.03 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=69.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC---CeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Cc-c
Q 009256 310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY-S 383 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G---~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~ 383 (539)
||+|||.|.||.+|+..|.++| ++|.++ ++++++.+++.++. ...... +. +
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-----------------------GVQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-----------------------TTEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-----------------------ccccccCChHH
Confidence 7999999999999999999999 999965 99999988875431 122222 33 7
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
.++.+|+||.|+| +....+++.++ ....++.+++|.+.
T Consensus 58 ~~~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 58 AAQEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred hhccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 7889999999998 66677899999 66678888887654
No 187
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.05 E-value=8.6e-10 Score=95.28 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
.||+|||+|.+|..++..|.++||+|..+ .|+++..+++...+ +.....+..+.+.+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~~ 68 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILRD 68 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------cccccccccccccc
Confidence 48999999999999999999999999865 78877766653321 11222222266889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHh--CCCCeEEEecCCCCChHHHhhccCCCCcEEEecc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~--~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~ 446 (539)
+|++|+++|++. ...+.++|... ..++.+|+-++-..+.+-+.........+..+||
T Consensus 69 aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 69 ADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp -SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred CCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999874 77888999887 7789988866656666655544444445566664
No 188
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=6.8e-09 Score=96.33 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=125.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~ 384 (539)
++|+.||+|.||..|+++|.+.||+|++||+|++..+.+... + .+..+++ +.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~-----------g-------------a~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDE-----------G-------------ATGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhc-----------C-------------CccccCHHHHHHh
Confidence 379999999999999999999999999999999998887442 2 1111221 33
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh--hccCCCCcEEEeccCCCCCCC-------Ce
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG--EKTSSQDRIIGAHFFSPAHVM-------PL 455 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~--~~~~~~~r~vg~h~~~p~~~~-------~~ 455 (539)
+..--.|-.+||.. +....++.++.+.+.++.+|++...+.--..+. ..+.. .|+||++.-..+ ..
T Consensus 57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~----kgi~flD~GTSGG~~G~~~G~ 131 (300)
T COG1023 57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE----KGIHFLDVGTSGGVWGAERGY 131 (300)
T ss_pred cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh----cCCeEEeccCCCCchhhhcCc
Confidence 45557788888843 256788999999999999998765543333222 22221 277886533221 11
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCce---eEEEcC-cccc----hhhcchHHHH---HHHHHHHHcC---CCHHHHHHH
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKV---PVVVGN-CTGF----AVNRAFFPYS---QSARLLVSLG---VDVFRIDSA 521 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~---~v~v~~-~~g~----v~nrl~~~~~---~Ea~~l~~~G---~~~~~id~a 521 (539)
.-++.| ++++++++.++|+.+.-. -.+++. ..|. |-|-+=+.++ .|.+.++++. ++.++|.++
T Consensus 132 ~lMiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v 208 (300)
T COG1023 132 CLMIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV 208 (300)
T ss_pred eEEecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 124455 889999999999998652 345654 4454 3377755444 4889999884 488888888
Q ss_pred H
Q 009256 522 I 522 (539)
Q Consensus 522 ~ 522 (539)
+
T Consensus 209 W 209 (300)
T COG1023 209 W 209 (300)
T ss_pred H
Confidence 8
No 189
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.97 E-value=1.4e-09 Score=110.02 Aligned_cols=125 Identities=21% Similarity=0.341 Sum_probs=89.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||..+|..++..|+ +|+++|++++.++.-.-+..+. .. ......++..+++++++++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~----~~--------~~~~~~~I~~~~d~~~l~~ 74 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHS----NV--------IAGSNSKVIGTNNYEDIAG 74 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhh----hh--------ccCCCeEEEECCCHHHhCC
Confidence 589999999999999999999996 9999999998753211111110 00 0001135666678889999
Q ss_pred cCEEEEcc-------------------cCChhHHHHHHHHHHHhCCCC-eEEEecCCCCChHHHhhccCCC-CcEEEec
Q 009256 388 VDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (539)
Q Consensus 388 aDlVi~av-------------------pe~~~~~~~~~~~l~~~~~~~-~ii~s~ts~~~~~~i~~~~~~~-~r~vg~h 445 (539)
||+||++. +++..+++++.+++.+++++. .++++|.+.+....++.....| .|++|++
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 99999955 456777888899999999775 3455777766666666666554 7888876
No 190
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=6.5e-09 Score=106.48 Aligned_cols=172 Identities=13% Similarity=0.079 Sum_probs=111.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+.++||+|||+|.||+++|..|+++| +|++|.++++..+.+.+...+ ..+...+. .....+..+++. ++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHH
Confidence 34568999999999999999999999 789999999887776542100 00011010 001235566666 56
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-------HHHhhccCCCCcEE-EeccCCCCC---CC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-------NIVGEKTSSQDRII-GAHFFSPAH---VM 453 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~i~~~~~~~~r~v-g~h~~~p~~---~~ 453 (539)
+.++|+||.++| ....+.+++++.+++++++++++.+.++.. +.+.+.++. .++. -..|..+.. ..
T Consensus 75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGY 151 (341)
T ss_pred HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCC
Confidence 899999999998 666788999999999998878777777775 234444432 1211 111211111 11
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccc
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~ 492 (539)
+...++.. .+++..+.+..+|..-+..++...|..|.
T Consensus 152 ~t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~gv 188 (341)
T PRK12439 152 AAAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVGV 188 (341)
T ss_pred CeEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHHH
Confidence 11112222 26778888999998888888777786653
No 191
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.94 E-value=1.6e-09 Score=109.11 Aligned_cols=122 Identities=18% Similarity=0.286 Sum_probs=84.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
|+|||+|.||..+|..++..|+ +|+++|++++.++...-.+.. .... .....+++.+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~----~~~~--------~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQ----AAPI--------LGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHH----hhhh--------cCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 999999998754322111111 1100 00113566667788899999
Q ss_pred EEEEcc--------------cCChhHHHHHHHHHHHhCCCCeE-EEecCCCCChHHHhhccCC-CCcEEEe
Q 009256 390 MVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 444 (539)
Q Consensus 390 lVi~av--------------pe~~~~~~~~~~~l~~~~~~~~i-i~s~ts~~~~~~i~~~~~~-~~r~vg~ 444 (539)
+||+++ +++..+++++++++.++++++.+ +++|...+....+++.... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 66888899999999999977764 3455555555455554443 4567775
No 192
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.93 E-value=2.8e-09 Score=107.76 Aligned_cols=125 Identities=19% Similarity=0.292 Sum_probs=81.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
|+||+|||+|.||..+|..++..|+ +|+++|++++.++.....+.... ...+ ...+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~~~~---------~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---PVEG---------FDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---hhcC---------CCcEEEeCCCHHHHC
Confidence 4699999999999999999999876 99999999887543322221110 0000 113566667778899
Q ss_pred CcCEEEEcc--------------cCChhHHHHHHHHHHHhCCCCeEE-EecCCCCChHHHhhccCC-CCcEEEe
Q 009256 387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL-ATNTSTIDLNIVGEKTSS-QDRIIGA 444 (539)
Q Consensus 387 ~aDlVi~av--------------pe~~~~~~~~~~~l~~~~~~~~ii-~s~ts~~~~~~i~~~~~~-~~r~vg~ 444 (539)
+||+||+++ .++..+++++++++.+++++..+| ++|...+....+...... +.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 245578888999999998665333 333333222223232222 3566665
No 193
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=2.7e-08 Score=98.88 Aligned_cols=193 Identities=14% Similarity=0.121 Sum_probs=130.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~ 384 (539)
..||+||+|.||+.+|.++.++||.|.+|+|++++.+...+.. ..+ ..+....++ +.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~--------~~~-----------k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAER--------AKG-----------KNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhC--------ccC-----------CCccccCcHHHHHHH
Confidence 4699999999999999999999999999999999988875531 101 123333333 33
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhh---ccCCCCcEEEeccCCC---CCCCCeeee
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSP---AHVMPLLEI 458 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~---~~~~~~r~vg~h~~~p---~~~~~~vei 458 (539)
++.---|+++|-.- .....++++|.+++.++.|+++...+.-.+++.. .....-.|+|+-.-.. +..+|. +
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS--i 141 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS--I 141 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--c
Confidence 56667788887543 3346788999999999999997665544443332 2223345777754211 111111 4
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCce----e--EEEc-Ccccchh----hcchH---HHHHHHHHHHHc--CCCHHHHHHHH
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKV----P--VVVG-NCTGFAV----NRAFF---PYSQSARLLVSL--GVDVFRIDSAI 522 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~----~--v~v~-~~~g~v~----nrl~~---~~~~Ea~~l~~~--G~~~~~id~a~ 522 (539)
++| .++++.+.+.++++.+..+ | .+++ ++.|..+ |=+=+ .++.|++.+.+. |.+.++|.+++
T Consensus 142 MpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF 219 (473)
T COG0362 142 MPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVF 219 (473)
T ss_pred CCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 444 4899999999999987542 2 3344 4566544 66644 567799999988 46999999888
Q ss_pred HhC
Q 009256 523 RSF 525 (539)
Q Consensus 523 ~~~ 525 (539)
..+
T Consensus 220 ~~W 222 (473)
T COG0362 220 EEW 222 (473)
T ss_pred HHh
Confidence 443
No 194
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.92 E-value=3.1e-09 Score=107.58 Aligned_cols=125 Identities=23% Similarity=0.310 Sum_probs=87.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||.+++..++..| .+|+++|++++.++...-..... .. ......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~----~~--------~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF----ST--------LVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh----cc--------ccCCCeEEEeCCCHHHhCC
Confidence 38999999999999999999999 69999999987755321111110 00 0000124555677789999
Q ss_pred cCEEEEcc--cCCh------------hHHHHHHHHHHHhCCCC-eEEEecCCCCChHHHhhccCCC-CcEEEec
Q 009256 388 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (539)
Q Consensus 388 aDlVi~av--pe~~------------~~~~~~~~~l~~~~~~~-~ii~s~ts~~~~~~i~~~~~~~-~r~vg~h 445 (539)
||+||++. |.++ .+++++.+++.+++++. .++++|.+.+....+......| .+++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999998 6665 78889999999998776 3445666655555555555544 6788775
No 195
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.86 E-value=5.8e-09 Score=105.99 Aligned_cols=165 Identities=18% Similarity=0.075 Sum_probs=103.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC--------CeEEEEeC-----ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 009256 310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 376 (539)
||+|||+|.||.++|..++++| ++|++|.+ +++..+...+..++ .++...-.+ ..++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n--~~ylpgi~L--------p~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHEN--VKYLPGIKL--------PANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCC--ccccCCCcC--------CCCe
Confidence 6999999999999999999999 99999999 44433333221100 000100001 1356
Q ss_pred cccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--H-------HhhccCCCCcEEEecc
Q 009256 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--I-------VGEKTSSQDRIIGAHF 446 (539)
Q Consensus 377 ~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~-------i~~~~~~~~r~vg~h~ 446 (539)
++++|+ +++++||+||.++| .+..+.+++++.++++++.++++.++++... . +.+.+.. ++. .
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~~---~ 143 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PCG---V 143 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--CeE---E
Confidence 777887 67899999999999 6668888999999999888888888877654 2 1122211 211 1
Q ss_pred CCCCCC-------CCeeeeecCCCCc--HHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 447 FSPAHV-------MPLLEIVRTERTS--AQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 447 ~~p~~~-------~~~vei~~~~~t~--~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
...|.. .+...++.+..-+ .+..+.++.+|..=-.+++...|..|
T Consensus 144 lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 144 LSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred eeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 122211 1111122222111 78888888888765556666667655
No 196
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.86 E-value=7e-09 Score=106.09 Aligned_cols=164 Identities=18% Similarity=0.060 Sum_probs=104.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-------CeEEEEeCChHH-----HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-----LLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 376 (539)
+||+|||+|.||+++|..++++| ++|.+|.++++. .+...+..++ .+++..-.+. +++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N--~~ylp~~~Lp--------~ni 81 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHEN--VKYLPGIKLP--------DNI 81 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCC--cccCCCCcCC--------Cce
Confidence 58999999999999999999997 899999999862 3333221100 0111111111 467
Q ss_pred cccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHH--hCCCCeEEEecCCCCChHH--------H-hhccCCCCcEEEe
Q 009256 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDLNI--------V-GEKTSSQDRIIGA 444 (539)
Q Consensus 377 ~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~--~~~~~~ii~s~ts~~~~~~--------i-~~~~~~~~r~vg~ 444 (539)
..++|+ +++++||+||.++| ++..+.+++++.+ +++++.+++|.+.++...+ + .+.+.. ++..
T Consensus 82 ~~tsdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~~- 156 (365)
T PTZ00345 82 VAVSDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCCA- 156 (365)
T ss_pred EEecCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeEE-
Confidence 778887 67899999999999 7778899999988 7777878888777665432 2 122222 2211
Q ss_pred ccCCCCC-------CCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 445 HFFSPAH-------VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 445 h~~~p~~-------~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
+..|. ..+...++.+ .+++..+.++++|..=..+++...|..|
T Consensus 157 --LsGPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 157 --LSGANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred --EECCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 11221 1111112222 2778888888888766666666667554
No 197
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.84 E-value=8.4e-08 Score=96.94 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=114.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||..+|..|+++|++|++|++ ++..+...+. .+ .+....-+ .. -.....++. +...+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~---g~--~~~~~~~~-----~~-~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER---GL--VIRSDHGD-----AV-VPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC---Ce--EEEeCCCe-----EE-ecceeecCHHHccCC
Confidence 3799999999999999999999999999999 7666654321 00 00000000 00 011123344 33589
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhccCCCCcEE-Eecc-----CCCCCCC----Cee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHF-----FSPAHVM----PLL 456 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~~~~~r~v-g~h~-----~~p~~~~----~~v 456 (539)
+|+||.|++... ...+++++.+.+.++++|++...++... .+...++. .+++ +..+ ..|-... ..+
T Consensus 69 ~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 69 FDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred CCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence 999999998543 5677788888888888887777776543 44444432 2333 2222 1211100 001
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc-----chhh------------------------cchHHHHHHHHH
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVN------------------------RAFFPYSQSARL 507 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g-----~v~n------------------------rl~~~~~~Ea~~ 507 (539)
.+-..+....+..+.+..++...|..+....|... ++.| +++..++.|...
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~ 225 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLA 225 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHH
Confidence 11111223345666777788887766555555321 1112 334456678888
Q ss_pred HHHc-CC--CHHHHHHHH
Q 009256 508 LVSL-GV--DVFRIDSAI 522 (539)
Q Consensus 508 l~~~-G~--~~~~id~a~ 522 (539)
+.+. |+ +.+.+++.+
T Consensus 226 v~~a~G~~~~~~~~~~~~ 243 (305)
T PRK12921 226 VARAEGAPLRDDVVEEIV 243 (305)
T ss_pred HHHHcCCCCChhHHHHHH
Confidence 8866 87 455555554
No 198
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.79 E-value=3.7e-08 Score=100.57 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=74.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-CC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-KD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~~ 387 (539)
||+|||+|.||..+|..|+++|++|++|+|+++.++...+...+. .++. +. .....+..+++. +.+ .+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~--~~~~-~~-------~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNL--KYLP-TC-------HLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCc--ccCC-CC-------cCCCCeEEeCCHHHHHhCC
Confidence 799999999999999999999999999999988776654321000 0000 00 000233445555 444 58
Q ss_pred cCEEEEcccCChhHHHHHHHHHHH-hCCCCeEEEecCCCCCh
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTIDL 428 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~-~~~~~~ii~s~ts~~~~ 428 (539)
+|+||.++| ......+++++.+ ++++++.+++.++++..
T Consensus 72 ~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 72 ATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999999998 5557788899988 88888766666766643
No 199
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.77 E-value=8.4e-08 Score=96.85 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=76.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
||+|||+|.||..+|..|+++|++|++++++++..+...+. .+. +..+.. ...+...++.+.+.++|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~---g~~--~~~~~~--------~~~~~~~~~~~~~~~~d 68 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN---GLR--LEDGEI--------TVPVLAADDPAELGPQD 68 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc---CCc--ccCCce--------eecccCCCChhHcCCCC
Confidence 79999999999999999999999999999988776655331 000 001100 01122334444458999
Q ss_pred EEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhcc
Q 009256 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKT 435 (539)
Q Consensus 390 lVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~ 435 (539)
+||.+++.. ....+++.+.+++.++++|++...++... .+...+
T Consensus 69 ~vila~k~~--~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 69 LVILAVKAY--QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred EEEEecccc--cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 999999844 35678888998888888777777777643 344434
No 200
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.74 E-value=5.7e-07 Score=91.18 Aligned_cols=201 Identities=9% Similarity=0.067 Sum_probs=115.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
+..++|+|||+|.||+.+|..|+++|++|+++.+++. +...+. .+........ .........++.+..
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~-------g~~~~~~~~~---~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVREN-------GLQVDSVHGD---FHLPPVQAYRSAEDM 70 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhC-------CeEEEeCCCC---eeecCceEEcchhhc
Confidence 3446899999999999999999999999999999863 222110 0000000000 000112223334556
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhccCCCCcEEEe-cc-----CCCC---CC--C
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGA-HF-----FSPA---HV--M 453 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~~~~~r~vg~-h~-----~~p~---~~--~ 453 (539)
..+|+||.|++... .+.+++.+.+.+.+++++++...++... .+...++ ++++++. .+ ..|. +. +
T Consensus 71 ~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCC
Confidence 78999999998443 3567788888888888888777787654 4444443 2344432 22 2221 01 1
Q ss_pred CeeeeecCCCCc-----HHHHHHHHHHHHHcCceeEEEcCccc-----chhh------------------------cchH
Q 009256 454 PLLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTG-----FAVN------------------------RAFF 499 (539)
Q Consensus 454 ~~vei~~~~~t~-----~e~~~~~~~l~~~lg~~~v~v~~~~g-----~v~n------------------------rl~~ 499 (539)
+. .+-..+..+ .+..+.+..+++..|..+....|... ++.| .++.
T Consensus 148 ~~-~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~ 226 (313)
T PRK06249 148 RV-NLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIR 226 (313)
T ss_pred cE-EEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHH
Confidence 11 111111112 46667788888888877665555332 1111 2234
Q ss_pred HHHHHHHHHHHc-CC--CHHHHHHHH
Q 009256 500 PYSQSARLLVSL-GV--DVFRIDSAI 522 (539)
Q Consensus 500 ~~~~Ea~~l~~~-G~--~~~~id~a~ 522 (539)
.++.|+..+++. |+ +.+.++..+
T Consensus 227 ~~~~E~~~va~a~Gi~~~~~~~~~~~ 252 (313)
T PRK06249 227 ALMAEVIQGAAACGHTLPEGYADHML 252 (313)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHH
Confidence 556688888866 87 444465555
No 201
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.68 E-value=5.4e-08 Score=97.90 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=69.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||..+|..++.+|+ +|+++|++++..+...-.+. +.+. ......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~-------~~~~-----~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMY-------EASP-----VGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhh-------hhhh-----ccCCCcEEEecCCHHHhCC
Confidence 389999999999999999999887 89999998664331111111 1000 0001146777788877999
Q ss_pred cCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
||+||.+++. +....+.+.+++.++.+ +.+++..+
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~t 118 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVS 118 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEec
Confidence 9999999972 34556666677888864 44444333
No 202
>PRK10949 protease 4; Provisional
Probab=98.67 E-value=2e-07 Score=101.61 Aligned_cols=163 Identities=20% Similarity=0.228 Sum_probs=106.8
Q ss_pred cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchH
Q 009256 12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 12 ~~~v~~i~l~~p----~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
++.|++|+++-. + .+.++. +.+.+.++.+..|++||+|||+-..+ |+.... .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence 467999998653 1 233444 56788899999999999999985432 221100 011
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcc------------cCCCCCCcchhhcc---
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGTQRL--- 150 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g~~~~l--- 150 (539)
..+.+ .+++...||||+.+.|.|..||+.++++||.++|.+.+..|.-.+ ++|+-+..-.+-.+
T Consensus 385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 22333 346677899999999999999999999999999999876544222 24443321111101
Q ss_pred -------------------------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHH
Q 009256 151 -------------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (539)
Q Consensus 151 -------------------------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (539)
.|.+..... +-+..|+.+++++|++.||||++-..++..+.+.++
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~ 539 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAEL 539 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 112222222 335689999999999999999998766555444443
No 203
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.66 E-value=2.2e-07 Score=84.69 Aligned_cols=142 Identities=25% Similarity=0.293 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.+++.+.+-|.+.++.++++ ..+.|+|.=. |-|+++.. ...++ +.|...++||++.|+
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCcCEEEEEe
Confidence 36677888899999998865 5677877522 22333221 22445 667889999999999
Q ss_pred ---CccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcc--h------hhc------cccccC--HHHHHHHHHcCC
Q 009256 107 ---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG--G------TQR------LPRLVG--LSKAIEMMLLSK 167 (539)
Q Consensus 107 ---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g--~------~~~------l~r~vG--~~~a~~l~l~g~ 167 (539)
|.|.++|.-++++||.+++.+++.++....-.|.-+... . ... +.+.-| ...+.+++-...
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~ 146 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL 146 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence 999999999999999999999999998776433211000 0 011 122223 466778888889
Q ss_pred CCCHHHHHHcCCcceecCc-chHH
Q 009256 168 SITSEEGWKLGLIDAVVTS-EELL 190 (539)
Q Consensus 168 ~~~a~eA~~~Glv~~vv~~-~~l~ 190 (539)
.++++||+++|++|.|+.. ++|+
T Consensus 147 ~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 147 SLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred CcCHHHHHHcCCceeeeCCHHHHh
Confidence 9999999999999999854 3443
No 204
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.66 E-value=4e-07 Score=85.12 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=81.9
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
||+|||+ |.||..++..|.++||+|++ .+|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~~ 32 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KKA 32 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CCC
Confidence 7999998 99999999999999999861 368
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCC-----CeeeeecCCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTER 463 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~-----~~vei~~~~~ 463 (539)
|+||.|+| .....++++++. .+|++.+|.... +... ..+++|.||+..|... ..+.+ ..+.
T Consensus 33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~~--i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~~ 98 (197)
T PRK06444 33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKWP--FKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-INDI 98 (197)
T ss_pred CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCHH--HHHh---cCCEEecCCCCCCCcCcccccceEEE-ECCC
Confidence 99999999 444556665543 256666665442 2221 3479999997765432 22333 3567
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEc
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
++++.++.++++++ |.+++.+.
T Consensus 99 ~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 99 SRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCHHHHHHHHHHHc--CCEEEEeC
Confidence 88899999999998 88877763
No 205
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.66 E-value=8e-08 Score=87.38 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcC
Q 009256 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (539)
Q Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G 107 (539)
++..+.+++.+.|..++.++..+.|+|.=. |.|+++. ....++ +.|..+++||++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~~~~i~-~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVF----------------AGMAIY-DTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHH----------------HHHHHH-HHHHhcCCCceEEEEe
Confidence 567889999999999998877777777422 2233221 122455 6788899999999999
Q ss_pred ccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHHHHc
Q 009256 108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMMLL 165 (539)
Q Consensus 108 ~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l~l~ 165 (539)
.|.++|.-++++|| .|++.++++|.+....-+. .|... .+.+.-| .....+++-.
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~ 144 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLER 144 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcC
Confidence 99999999999999 6888888887754332111 11110 1111222 4555666777
Q ss_pred CCCCCHHHHHHcCCccee
Q 009256 166 SKSITSEEGWKLGLIDAV 183 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~v 183 (539)
+..++|+||+++||||++
T Consensus 145 ~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 145 DTWLSAREAVEYGFADTI 162 (162)
T ss_pred CccccHHHHHHcCCCCcC
Confidence 788899999999999975
No 206
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.65 E-value=8.3e-08 Score=97.49 Aligned_cols=99 Identities=16% Similarity=0.061 Sum_probs=76.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
+|+|||+|.||.++|..+...|++|++||++++..... +....++ +.+++|
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~a 199 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKDA 199 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhcC
Confidence 79999999999999999999999999999997542110 1122344 668999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS 436 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~ 436 (539)
|+|+.++|...+....+.+++.+.++++++++..+.+..+. .+...+.
T Consensus 200 DiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 200 DIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999988877777778888999999998766664443 4544444
No 207
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.63 E-value=1.1e-06 Score=85.89 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=114.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHH
Q 009256 331 NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSEL 409 (539)
Q Consensus 331 G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l 409 (539)
.++|++++|++++++.+.+.+ + +....+. +.+.+||+||.|++ +.....++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~----------------------g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL----------------------G-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc----------------------C-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence 368999999998876653321 1 2223333 55688999999998 66677888888
Q ss_pred HHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee-cCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 410 EKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 410 ~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~-~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.+.+.++.+|+|...++++.++...+....+++.+.|..|...+..+..+ .+...+++..+.++.+|..+|....+ .+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E 142 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PE 142 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CH
Confidence 87777778999999999999998888654578899998887776655544 67778889999999999999976644 33
Q ss_pred --cccch-----hhcchHHHHHHHH--HHHHcCCCHHHHHHHH
Q 009256 489 --CTGFA-----VNRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (539)
Q Consensus 489 --~~g~v-----~nrl~~~~~~Ea~--~l~~~G~~~~~id~a~ 522 (539)
...+. ...+++ ++.|++ ..++.|+++++-.+..
T Consensus 143 ~~~~~~talsgsgPA~~~-~~~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVF-LFIEALADAGVKQGLPRELALELA 184 (245)
T ss_pred HHcchHHhhccCcHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 11111 122222 223332 3335588887766654
No 208
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.54 E-value=2e-07 Score=92.04 Aligned_cols=98 Identities=29% Similarity=0.339 Sum_probs=75.0
Q ss_pred EEEEcC-CCCcHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 311 I~iIG~-G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
|+|||+ |.||..++..++..| .+|++||+++++++.....+++..... ...+++.++|. ++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988777655544332211 01356667774 88
Q ss_pred CCCcCEEEE--------------cccCChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 385 ~~~aDlVi~--------------avpe~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
+++||+||+ .+.++..+++++.+++.+++ ++++++.-
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~ 118 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV 118 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 999999999 55667788999999999998 45554433
No 209
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.53 E-value=1.4e-06 Score=81.74 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=95.7
Q ss_pred cHHHHHHHHHCCCeEEEEeCChHHHHHH-HHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEEEEcccC
Q 009256 320 GSGIATAHILNNIYVVLKEVNSEYLLKG-IKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE 397 (539)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi~avpe 397 (539)
|+.||..|+.+||+|++.|+|.+-.+.. -+++ -+ ..+..++|. ++++.+++.+.-.|-
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~v-------ed-------------AGV~vv~dD~eaa~~~Ei~VLFTPF 92 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRV-------ED-------------AGVEVVSDDAEAAEHGEIHVLFTPF 92 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHH-------Hh-------------cCcEEecCchhhhhcceEEEEeccc
Confidence 7889999999999999999987755442 1111 11 235555554 889999999998884
Q ss_pred ChhHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccCCCCcEEEeccCCCCCC-----CCeeeeecCCC------
Q 009256 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-----MPLLEIVRTER------ 463 (539)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~~~~r~vg~h~~~p~~~-----~~~vei~~~~~------ 463 (539)
.. ..-.+.++|.++++.+++|+.+.+..++. .+...+..+.+-+|...++|.-+ -..+ ++.+..
T Consensus 93 Gk-~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g~el 170 (340)
T COG4007 93 GK-ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEGKEL 170 (340)
T ss_pred ch-hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCceee
Confidence 42 22356788999999999886433333322 33344444444455555544311 1111 333322
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEc
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
.++|.++++.+++++.|+.++++.
T Consensus 171 ATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 171 ATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccHHHHHHHHHHHHhcCCceEecC
Confidence 378999999999999999998874
No 210
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.52 E-value=5.6e-07 Score=84.68 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--ecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ia 103 (539)
..++..+...+...|..++.++..+-|.+ .+.| +|+. ....++ +.|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence 34788899999999998886644344444 3322 2221 123455 667888899999
Q ss_pred EEcCccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchh------------------hccccccC--HHHHHH
Q 009256 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIE 161 (539)
Q Consensus 104 av~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~vG--~~~a~~ 161 (539)
.+.|.|.++|..|+++++ .|++.++++|.+....-|. .|-+ ..+...-| .....+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999843 4666555555543332111 1111 11222223 355566
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
++-.+..++|+||+++||||+|+..
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeec
Confidence 6677889999999999999999854
No 211
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.47 E-value=1.6e-07 Score=92.89 Aligned_cols=180 Identities=17% Similarity=0.118 Sum_probs=134.4
Q ss_pred CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcccccchHHHHHHH
Q 009256 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (539)
Q Consensus 13 ~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (539)
.+++.+.++ |+.|..|.++..+|..-++.+..+..+++..+|+.. ..|++|.|..++.-..... .........+++
T Consensus 65 ~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii- 141 (380)
T KOG1683|consen 65 TGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII- 141 (380)
T ss_pred cccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH-
Confidence 378888887 889999999999999999999999999999998876 7799999999886532211 111222345666
Q ss_pred HHHHhCCCcEEEEEcCccccch--hHhhhccCEEEeeC--CceEeCCcccCC-CCCCcchhhccccccCHHHHHHHHHcC
Q 009256 92 NLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAAP--KTQLGLPELTLG-VIPGFGGTQRLPRLVGLSKAIEMMLLS 166 (539)
Q Consensus 92 ~~i~~~~~p~iaav~G~a~GgG--~~lal~~D~~ia~~--~a~f~~pe~~~G-l~p~~g~~~~l~r~vG~~~a~~l~l~g 166 (539)
....+++.|+.+++||++--|+ +-++.+|+|++... .-..+..+..++ .+|.+-.- .+....|...+-.-+--+
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD-~~~t~fGf~~g~~~L~d~ 220 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLID-SLITKFGFRVGERALADG 220 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHH-HHHHhcCccccHHHHhhc
Confidence 5688999999999999999998 88999999999984 333467777777 34444332 223334544445556678
Q ss_pred CCCCHHHHHHcCCcceecCc--chHHHHHHHH
Q 009256 167 KSITSEEGWKLGLIDAVVTS--EELLKVSRLW 196 (539)
Q Consensus 167 ~~~~a~eA~~~Glv~~vv~~--~~l~~~a~~~ 196 (539)
.-++..||++-|+++++.|. +++.+.....
T Consensus 221 ~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g 252 (380)
T KOG1683|consen 221 VGFDVAEALAVGLGDEIGPRIEEELLEKGRAG 252 (380)
T ss_pred cCccHHHHHhhccchhccchhHHHHHHHHhhh
Confidence 88999999999999999984 4554444433
No 212
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.45 E-value=1.1e-06 Score=78.02 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=69.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
+||+|||+ |.+|..+|..|...+. +++++|++++.++....++++....... .......+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence 48999999 9999999999999875 8999999998777655554433221110 111223566899
Q ss_pred CCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 386 ~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
++||+||.+... +..+.+++..++.++.++. +++..+.
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~-~vivvtN 119 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDA-IVIVVTN 119 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTS-EEEE-SS
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCcc-EEEEeCC
Confidence 999999988732 3335556666788887544 4444443
No 213
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.44 E-value=4.4e-07 Score=89.90 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=88.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||.++|.+|...|++|+++++.....+.+.+ .| .... ++ +.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-----------~G-------------~~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-----------DG-------------FEVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH-----------cC-------------CEEC-CHHHHHhc
Confidence 58999999999999999999999999999876433222211 11 2222 34 77899
Q ss_pred cCEEEEcccCChhHHHHHH-HHHHHhCCCCeEEEecCCCCChHHHhhccCCCC--cEEEeccCCCCC----------CCC
Q 009256 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPAH----------VMP 454 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~-~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~--r~vg~h~~~p~~----------~~~ 454 (539)
||+|+.++|++ +.. .++ +++.+.++++++++- +-+..+.-- .+..|. .++-+-|-.|-+ -.|
T Consensus 72 ADVV~llLPd~-~t~-~V~~~eil~~MK~GaiL~f-~hgfni~~~--~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp 146 (335)
T PRK13403 72 AQVVQMLLPDE-QQA-HVYKAEVEENLREGQMLLF-SHGFNIHFG--QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVP 146 (335)
T ss_pred CCEEEEeCCCh-HHH-HHHHHHHHhcCCCCCEEEE-CCCcceecC--ceeCCCCCeEEEECCCCCChHHHHHHHcCCCce
Confidence 99999999964 444 554 568999999997763 334333211 122222 222222222211 111
Q ss_pred eeeeecCCCCcHHHHHHHHHHHHHcCce
Q 009256 455 LLEIVRTERTSAQVILDLMTVGKIIKKV 482 (539)
Q Consensus 455 ~vei~~~~~t~~e~~~~~~~l~~~lg~~ 482 (539)
.+.-+ ....+-.+.+.+..+...+|..
T Consensus 147 ~l~av-~qd~sg~a~~~ala~a~~iG~~ 173 (335)
T PRK13403 147 ALVAV-HQDATGTALHVALAYAKGVGCT 173 (335)
T ss_pred eEEEE-EECCCCcHHHHHHHHHHHcCCC
Confidence 11122 2233556788899999999876
No 214
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.39 E-value=2.9e-06 Score=81.95 Aligned_cols=198 Identities=18% Similarity=0.236 Sum_probs=128.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHH----HHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
|.||+-||+|.+|++....++.. ..+|+++|.+..++...... .+..+++.++. ..-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46899999999999987776654 46999999999998877543 13333333321 11135667778
Q ss_pred c-cCCCCcCEEEEcccC-------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH---HhhccCCCCcEEEe
Q 009256 382 Y-SEFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGA 444 (539)
Q Consensus 382 ~-~~~~~aDlVi~avpe-------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~---i~~~~~~~~r~vg~ 444 (539)
. .+++.+|+|+.+|.. |+...+...+.|.+....+.|++ ..|+.|+.. +...+.+... |+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence 7 779999999999842 55566666677888877777765 466666642 2222222111 22
Q ss_pred c------------------cCCCCCCCCeeeeecCCCCcH--HHHHHHHHHHHHcC-ceeEEE-----cCcccchhhcch
Q 009256 445 H------------------FFSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIK-KVPVVV-----GNCTGFAVNRAF 498 (539)
Q Consensus 445 h------------------~~~p~~~~~~vei~~~~~t~~--e~~~~~~~l~~~lg-~~~v~v-----~~~~g~v~nrl~ 498 (539)
+ .+||.+. +++|..|.+ .+++.+..+++.+- ..-+.. .+-..+.+|..+
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl 223 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL 223 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence 2 2455544 778877654 56777777777753 333333 234456677776
Q ss_pred HHH---HHHHHHHHHc-CCCHHHHHHHH
Q 009256 499 FPY---SQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 499 ~~~---~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
+.- +|..-.++|. |.+.+++..++
T Consensus 224 aqrissins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 224 AQRISSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HHHHhhhHHHHHHHHhcCCCHHHHHHHh
Confidence 643 4566777777 99999988877
No 215
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.37 E-value=2.3e-06 Score=85.78 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=87.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||..+|..+...|++|++||++... + +. .....++ +.++.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-~----------------~~------------~~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-D----------------GI------------SSIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-c----------------Cc------------ccccCCHHHHHhh
Confidence 58999999999999999888889999999987421 0 00 0001233 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccCCC-CcEEEeccCC--CC---CCCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQ-DRIIGAHFFS--PA---HVMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~~-~r~vg~h~~~--p~---~~~~~vei~ 459 (539)
||+|+.++|.+.+.+.-+-++....++++++++..+.+-.+ ..+...+... -...++..|. |+ +..+.+.+.
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT 253 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS 253 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence 99999999988887665556677889999988855544333 3555544432 2333444332 21 234556677
Q ss_pred cC-C-CCcHHHHHHH
Q 009256 460 RT-E-RTSAQVILDL 472 (539)
Q Consensus 460 ~~-~-~t~~e~~~~~ 472 (539)
|+ . .++++..+.+
T Consensus 254 PHi~g~~t~e~~~~~ 268 (303)
T PRK06436 254 PHVAGGMSGEIMQPA 268 (303)
T ss_pred CccccccCHHHHHHH
Confidence 77 2 2455544443
No 216
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.35 E-value=1.2e-06 Score=77.88 Aligned_cols=93 Identities=16% Similarity=0.203 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|+|||.|..|.+.|.+|.+.|++|++-.+... ..+++.+ ..+.+.+-.++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~------------------------~Gf~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA------------------------DGFEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH------------------------TT-ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH------------------------CCCeeccHHHHHhh
Confidence 5899999999999999999999999999988866 4444422 23443333378899
Q ss_pred cCEEEEcccCChhHHHHHH-HHHHHhCCCCeEEEecCCCCCh
Q 009256 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~-~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
+|+|+..+|+ +.-.+++ ++|.++++++..+.. +.+..+
T Consensus 61 aDvV~~L~PD--~~q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 61 ADVVMLLLPD--EVQPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp -SEEEE-S-H--HHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred CCEEEEeCCh--HHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 9999999994 3455777 779999999998763 444443
No 217
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.34 E-value=3.9e-07 Score=102.10 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=60.1
Q ss_pred HHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 472 LMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 472 ~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
+..++..+++.++.+++.+||++||++++++||+.+++++|+ +++|||.++ .++|||. |||+++|.++
T Consensus 627 v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~G 700 (737)
T TIGR02441 627 ADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYG 700 (737)
T ss_pred HHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhC
Confidence 455667778777766789999999999999999999999997 999999999 7999996 9999999764
No 218
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.32 E-value=1e-06 Score=89.85 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|.+|.+||+++.... . . ..+ ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-~----------~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-E-K----------ELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-H-H----------HcC-------------CEe-cCHHHHHhh
Confidence 5899999999999999999999999999999864321 1 0 001 111 233 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|...+.+..+-++..+.++++++++..+.+-.+ ..+...+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 99999999988877766667788889999998866555443 34444443
No 219
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.29 E-value=2.2e-06 Score=78.83 Aligned_cols=133 Identities=21% Similarity=0.204 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcC
Q 009256 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (539)
Q Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G 107 (539)
++.+...++...+..+..++..+.|+|.=. |.|+|+. ....++ +.|...+.|+++.+.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~----------------~~~~i~-~~l~~~~~~v~t~~~g 76 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVT----------------AGLAIY-DTMQYIKPPVSTICLG 76 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEEe
Confidence 678889999999999988766556665321 1222221 122444 6677889999999999
Q ss_pred ccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhh-----------------cccccc--CHHHHHHHHHcC
Q 009256 108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLV--GLSKAIEMMLLS 166 (539)
Q Consensus 108 ~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~v--G~~~a~~l~l~g 166 (539)
.|.++|.-+++++| -|++.+++.|.+-+...+..- . ... .+...- ......+++-.+
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g-~-~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~ 154 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGG-Q-ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRD 154 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Confidence 99999999999999 799999999988776544322 1 110 111222 234556777789
Q ss_pred CCCCHHHHHHcCCccee
Q 009256 167 KSITSEEGWKLGLIDAV 183 (539)
Q Consensus 167 ~~~~a~eA~~~Glv~~v 183 (539)
..++++||+++||||+|
T Consensus 155 ~~lta~EA~e~GiiD~V 171 (171)
T cd07017 155 RYMSAEEAKEYGLIDKI 171 (171)
T ss_pred ccccHHHHHHcCCCccC
Confidence 99999999999999986
No 220
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.28 E-value=1.3e-06 Score=88.99 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=67.5
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||.++|..++ ..|.+|+.||+++..... ..+....++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---------------------------~~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---------------------------TYVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---------------------------hhccccCCHHHHHH
Confidence 47999999999999999994 468899999988643210 011223344 5678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+||+|+.++|.......-+-.++.+.++++++++..+.+..+.
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence 9999999999777654322245677899999888766665543
No 221
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.27 E-value=2.4e-06 Score=86.32 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=67.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..|+..| ++|+++|+++++++.....+++..... ... ..+. ..++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~-~~~-----------~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL-PSP-----------VKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc-CCC-----------eEEE-cCCHHHhC
Confidence 48999999999999999999999 689999999988776655443221100 000 0122 34557789
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+||+||.+... +..+.+.+.+++.++.+. ++++
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~-~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFD-GIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 99999998853 333455666778887764 4444
No 222
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.27 E-value=1.4e-06 Score=87.80 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=74.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||..+|..+...|++|++||++++..... .......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 589999999999999999999999999999876431110 000011233 66899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~ 436 (539)
||+|+.++|.+.+.+.-+-++....++++++++..+-+- .-..+...+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 999999999988877766677888899999887555443 3345555444
No 223
>PRK07574 formate dehydrogenase; Provisional
Probab=98.26 E-value=2.2e-06 Score=88.38 Aligned_cols=104 Identities=10% Similarity=-0.005 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||..+|+.+...|.+|+.||+++...+...+ ..+....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~------------------------~g~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE------------------------LGLTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhh------------------------cCceecCCHHHHhhc
Confidence 47999999999999999999999999999998632111100 012222344 66899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~ 436 (539)
||+|+.++|...+....+=++....++++++++..+.+-.+. .+...+.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 999999999888876655566888899999888655554443 4444443
No 224
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.26 E-value=6e-06 Score=78.12 Aligned_cols=138 Identities=22% Similarity=0.219 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
..++..+..++...|..++.++..+.|.|.=. |.|+++. ....++ +.|..++.||++.+
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~----------------~g~~I~-d~i~~~~~~v~t~~ 100 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVT----------------AGDAIY-DTIQFIRPDVQTVC 100 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHH----------------HHHHHH-HHHHhcCCCcEEEE
Confidence 45889999999999999987654444444211 2233321 122455 67888899999999
Q ss_pred cCccccchhHhhhccC--EEEeeCCceEeCCcccC-CCCCCcchh------------------hccccccC--HHHHHHH
Q 009256 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLVG--LSKAIEM 162 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~-Gl~p~~g~~------------------~~l~r~vG--~~~a~~l 162 (539)
.|.|.+.|.-++++|| .|++.+++.|.+..... |. ..|-. ..+...-| .....++
T Consensus 101 ~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~ 178 (207)
T PRK12553 101 TGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD 178 (207)
T ss_pred EeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999 59999999998866543 21 11211 11222223 3556677
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
+-.+..++|+||+++||||+|+..
T Consensus 179 ~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 179 TDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HhcCccccHHHHHHcCCccEEcCc
Confidence 778999999999999999999854
No 225
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.26 E-value=2.5e-06 Score=80.30 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=70.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC---hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 382 (539)
.+|+|||+|.||+.+|..|++.|+ +++++|.+ ++.+.+-. . ..-..|....+.....+..+....+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~-----~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ--Y-----KASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc--C-----ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999999 79999999 54443310 0 00011221122223333333332222
Q ss_pred -----------cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 383 -----------~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+.++++|+||+| .++.+.+..+++++....+...++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 246789999999 6899999999999888877766665
No 226
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.25 E-value=6.9e-06 Score=82.89 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||+|||+|.||+-+|..|++.|++|++++|+++.++...+. +.+ .....+... . -... ..+.+....+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl-~i~~~g~~~------~-~~~~-~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGL-TLVEQGQAS------L-YAIP-AETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCe-EEeeCCcce------e-eccC-CCCccccccc
Confidence 379999999999999999999999999999988776665331 000 000011000 0 0011 1111335678
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhccC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTS 436 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~~ 436 (539)
|+||.|+- ..-....++.+.+++.+++.|++...++... .+...+.
T Consensus 72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 99999984 3334567788999999999888888887764 4545443
No 227
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.23 E-value=7.8e-06 Score=81.90 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=99.8
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
.+.|++|.++.+ ..+. ...+.+++...++.+..+ ..|||+-.. .|+.+... ......+
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s-------------~~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGY-------------GLAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHH-------------HHHHHHH
Confidence 367999999876 3221 224556666666665533 467776432 12221110 0011223
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchh---------------------h-
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT---------------------Q- 148 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------------~- 148 (539)
.++.+..||+++.+.+.|..||+.++++||-++|.+.+.+|...+... .|..... .
T Consensus 148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 457788999999999999999999999999999999997765444211 1221110 0
Q ss_pred ---------cc-----------cccc--CH-HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 009256 149 ---------RL-----------PRLV--GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (539)
Q Consensus 149 ---------~l-----------~r~v--G~-~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (539)
.+ ...| ++ ....+-+.+|+.+++++|++.||||++...+++...+.+
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~ 295 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK 295 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence 00 0000 00 112345678999999999999999999988877654443
No 228
>PLN03139 formate dehydrogenase; Provisional
Probab=98.22 E-value=2.8e-06 Score=87.55 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=75.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.||..+|..+...|.+|..||++....+... + ..+....++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------E-------------TGAKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------h-------------cCceecCCHHHHHhh
Confidence 4899999999999999999999999999998753222110 0 012223345 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|.+.+.+.-+-+++.+.++++++++..+-+-.+ ..+.+.+.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 99999999988887766656788899999988865555443 34544443
No 229
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.22 E-value=4.2e-06 Score=84.36 Aligned_cols=98 Identities=22% Similarity=0.256 Sum_probs=67.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.||+|||+|.+|.++|..++..|. +++++|++++.++....++++.... . . ...+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~-~--~----------~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF-L--K----------NPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc-C--C----------CCEEEECCCHHHhC
Confidence 389999999999999999998886 8999999987766554443322100 0 0 02455567888899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEE
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii 419 (539)
+||+||.+... +..+.+++.+++.++.+++.++
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 99999986521 2234455566777886554433
No 230
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.20 E-value=8.4e-06 Score=82.33 Aligned_cols=164 Identities=21% Similarity=0.279 Sum_probs=103.4
Q ss_pred cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 14 ~v~~i~l~~p-~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
.|+.|.++.+ . .+.+..--.+.+.+.++.+..|+.++.|+|.=+ |-|+.... .....+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence 5888877655 1 122222345667778888889999999999633 11221110 01122333
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhh----------------------
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ---------------------- 148 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------------- 148 (539)
+++..-. ||++.|+++|..||..++++||.+||++++..|---+..+. |......
T Consensus 123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~ 199 (317)
T COG0616 123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEELLEKLGVEKEVITAGEYKDILSPF 199 (317)
T ss_pred -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHHHHHhcCCceeeeeccccccccCcc
Confidence 3344444 99999999999999999999999999999987754443331 2111100
Q ss_pred --------------------cc-----ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHH
Q 009256 149 --------------------RL-----PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA 197 (539)
Q Consensus 149 --------------------~l-----~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 197 (539)
.+ ..+-.......-+.+|+.+++++|++.||||++-..++....+.+.+
T Consensus 200 ~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~ 273 (317)
T COG0616 200 RPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELA 273 (317)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHhc
Confidence 00 00001122245677999999999999999999987666555444443
No 231
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.18 E-value=3.1e-06 Score=76.37 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=65.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|+|+|.||.+++..|.+.| ++|+++|+++++.+...+.+... . + ... ..+. +.++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~-~----------~~~-~~~~~~~~~ 80 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------G-I----------AIA-YLDLEELLA 80 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------c-c----------cee-ecchhhccc
Confidence 57999999999999999999986 79999999998877654432110 0 0 011 1222 4478
Q ss_pred CcCEEEEcccCChh-HHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 387 ~aDlVi~avpe~~~-~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
++|+||.|+|.+.. .....+. ...+++++++++.++...
T Consensus 81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~ 120 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPL 120 (155)
T ss_pred cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCC
Confidence 99999999997664 1111111 123577888876655433
No 232
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.17 E-value=3e-05 Score=75.88 Aligned_cols=151 Identities=11% Similarity=0.023 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c-CCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~ 386 (539)
.+|||||.|.||.-+|..+.++|+.|...||+. -+.+.+.+ +. ...+++ + .-+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y----------------------g~-~~ft~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY----------------------GS-AKFTLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh----------------------cc-cccccHHHHHhc
Confidence 479999999999999999999999999999986 33333322 11 112222 2 236
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHh-CCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCC-------CCee
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV-------MPLL 456 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~-~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~-------~~~v 456 (539)
..|+|+.|+. ..-...+++..-.. ++.+++++..+|..... ...+-++..-.++..|++.+|.. .|+|
T Consensus 108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 7899999985 44445555554443 67789998877764443 34455666667899999887751 1333
Q ss_pred eee--cC-CCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 457 EIV--RT-ERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 457 ei~--~~-~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
-+- .+ ....+|.++.+.+++...|...|.+
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 221 11 1234899999999999999988876
No 233
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=5.1e-05 Score=74.68 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=124.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~ 383 (539)
...|+.||++.||..++.+.+.+|+.|.+|+|...+.+.....-.+ + ..+....++ .
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------G-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------C-----------CcccCCCCHHHHHH
Confidence 3479999999999999999999999999999999998887553211 1 012222222 2
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC-CChH-H-HhhccCCCCcEEEeccCC---CCCCCCeee
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST-IDLN-I-VGEKTSSQDRIIGAHFFS---PAHVMPLLE 457 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~-~~~~-~-i~~~~~~~~r~vg~h~~~---p~~~~~~ve 457 (539)
-++.--.|+..+-.-. ....++++|.+++.++.+|++...+ .+-+ . ..+.....--|+|+..-. .++.+|.
T Consensus 67 klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-- 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-- 143 (487)
T ss_pred hcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc--
Confidence 2455667776664332 3557788999999999888864432 3322 1 111222333466665421 2222222
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCce-----e--EEEcC-cccc----hhhcch---HHHHHHHHHHHHc--CCCHHHHHH
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKV-----P--VVVGN-CTGF----AVNRAF---FPYSQSARLLVSL--GVDVFRIDS 520 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~-----~--v~v~~-~~g~----v~nrl~---~~~~~Ea~~l~~~--G~~~~~id~ 520 (539)
++|| .++++...++++++.+... | .++++ ..|. |-|-+- +.++.|++.+... |.+-++|.+
T Consensus 144 lMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3444 4899999999999876432 2 45554 3443 336553 3688899999987 578888888
Q ss_pred HHHhC
Q 009256 521 AIRSF 525 (539)
Q Consensus 521 a~~~~ 525 (539)
++..+
T Consensus 222 vF~~W 226 (487)
T KOG2653|consen 222 VFDDW 226 (487)
T ss_pred HHHhh
Confidence 87433
No 234
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.16 E-value=2.3e-05 Score=78.84 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|+|+|.||+-++..|+++|++|+++.|++. +++.++. |.. ..... ..........+.+....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~-----------GL~i~~~~~-~~~~~~~~~~~~~~~~~ 67 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK-----------GLRIEDEGG-NFTTPVVAATDAEALGP 67 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC-----------CeEEecCCC-ccccccccccChhhcCC
Confidence 4899999999999999999999988998888875 5555331 110 00000 00011122233356779
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhhccCCCCcEEEeccCCCCCCCCeeeee-------
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIV------- 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~-i~~~~~~~~r~vg~h~~~p~~~~~~vei~------- 459 (539)
+|+||.++- .-...++++.+.+++++++.|++...++...+ +....+...-+.|+-+.......+.....
T Consensus 68 ~Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ 145 (307)
T COG1893 68 ADLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTV 145 (307)
T ss_pred CCEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEE
Confidence 999999884 44466888999999999998888888877665 33333332224444433322222111111
Q ss_pred --cCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 460 --RTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 460 --~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
....-.++.++.+.+.|+..|....+..|
T Consensus 146 ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 146 IGELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred EccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 11112336677777777777766555444
No 235
>PRK15076 alpha-galactosidase; Provisional
Probab=98.14 E-value=9.8e-06 Score=85.30 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=54.2
Q ss_pred ceEEEEcCCCCcHHHHH--HHH----HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~--~l~----~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|.||...+. .++ -.|.+|+++|+++++++.....++..+... + . ..+++.++|.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~-~--------~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G-A--------SAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C-C--------CeEEEEECCH
Confidence 58999999999966665 443 246799999999999886544443332221 1 1 1357778885
Q ss_pred -cCCCCcCEEEEccc
Q 009256 383 -SEFKDVDMVIEAVI 396 (539)
Q Consensus 383 -~~~~~aDlVi~avp 396 (539)
+++++||+||+++-
T Consensus 70 ~eal~dADfVv~ti~ 84 (431)
T PRK15076 70 REALQGADYVINAIQ 84 (431)
T ss_pred HHHhCCCCEEeEeee
Confidence 88999999998874
No 236
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.14 E-value=9.9e-06 Score=72.77 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=72.7
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc---cCCc-cCCC
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDY-SEFK 386 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~-~~~~ 386 (539)
|+|+|+|.||.-+|..|.+.|++|+++++++ .++...+.- + .+.... .+ ..+.. ..+. +...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g---~--~~~~~~--~~------~~~~~~~~~~~~~~~~~ 66 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQG---L--TITGPD--GD------ETVQPPIVISAPSADAG 66 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHC---E--EEEETT--EE------EEEEEEEEESSHGHHHS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhee---E--EEEecc--cc------eecccccccCcchhccC
Confidence 7899999999999999999999999999998 666643310 0 000000 00 00111 1111 2457
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhhccC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTS 436 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~-i~~~~~ 436 (539)
.+|+||.|+. ......+++.+.+++.+++.|++...++...+ +.+..+
T Consensus 67 ~~D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~ 115 (151)
T PF02558_consen 67 PYDLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFP 115 (151)
T ss_dssp TESEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHST
T ss_pred CCcEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcC
Confidence 8999999986 33345678889999999988888888877654 444443
No 237
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.13 E-value=6.9e-06 Score=83.05 Aligned_cols=97 Identities=24% Similarity=0.279 Sum_probs=66.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..++..|. +++++|++++.++....++++..... . . -.+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence 489999999999999999999998 89999999888766555443322100 0 0 1233 45668899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+||+||.+.-. +..+.+++..++.++.+. ++++
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~-~~vi 119 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFD-GIFL 119 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 99999987632 233445556667777654 4443
No 238
>PLN02602 lactate dehydrogenase
Probab=98.13 E-value=7.8e-06 Score=83.45 Aligned_cols=98 Identities=26% Similarity=0.371 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|+++|..++..|. +++++|++++.++....++.+... .. +. ..+..+.++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~--~~----------~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FL--PR----------TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cC--CC----------CEEEeCCCHHHhC
Confidence 599999999999999999998886 899999998876655444432210 00 00 1344445778899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEE
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii 419 (539)
+||+||.+... +..+.+++.+.+.++.++..++
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi 151 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999988521 2234455566677776555433
No 239
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.11 E-value=2e-05 Score=73.80 Aligned_cols=140 Identities=21% Similarity=0.206 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++..+...+.+.|..++..+..+.|.|.=. |-|+++. ....++ +.|...+.||++.+.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~----------------ag~aI~-d~i~~~~~~V~t~v~ 89 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDID----------------AGFAIF-NMIRFVKPKVFTIGV 89 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhCCCCEEEEEE
Confidence 4778888999999988876333344444211 2233321 122455 678889999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHHHH
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l~l 164 (539)
|.|.+.|.-++++||- |++.++++|..-...-++. |.+. .+...-| .....+++-
T Consensus 90 G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~ 166 (197)
T PRK14512 90 GLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTD 166 (197)
T ss_pred eeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhh
Confidence 9999999999999985 8999999886544322221 1111 0111222 244556666
Q ss_pred cCCCCCHHHHHHcCCcceecCc-chHH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTS-EELL 190 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~-~~l~ 190 (539)
....++|+||+++||||+|++. +++.
T Consensus 167 ~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 167 RDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred cCcccCHHHHHHcCCccEeecCcHHhH
Confidence 6788999999999999999965 3443
No 240
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.09 E-value=6.8e-06 Score=82.65 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=67.6
Q ss_pred EEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
|+|||+|.+|+++|..++..| .+++++|+++++++....++++..... . ...+..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999988776655443322110 0 0134434557899999
Q ss_pred CEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 389 DlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
|+||.+... +..+.+++..++.++. |+++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999998842 2334556667788887 444444
No 241
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.07 E-value=3e-06 Score=78.50 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=71.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|..+|..+...|.+|+.||++......... .... ..++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~------------------------~~~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE------------------------FGVE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH------------------------TTEE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc------------------------ccce-eeehhhhcch
Confidence 58999999999999999999999999999999875442110 1111 2244 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|-..+...-+=++....++++++++..+-+-.+ ..+...+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 99999999976665444445677789999988865554333 34555443
No 242
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.04 E-value=5.9e-05 Score=70.72 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--ecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.++.++..++...|-.++.++..+-|.+ .+.| +|+. ....++ +.|...+.||...
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~----------------~g~aIy-d~m~~~~~~V~Tv 94 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVI----------------SGLAIY-DTMQFVKPDVHTI 94 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchh----------------hHHHHH-HHHHhcCCCEEEE
Confidence 4899999999999999876544444444 3333 3221 122455 6788999999999
Q ss_pred EcCccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcch-h-----------------hccccccC--HHHHHHH
Q 009256 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGG-T-----------------QRLPRLVG--LSKAIEM 162 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~-~-----------------~~l~r~vG--~~~a~~l 162 (539)
+-|.|.+.|.-|++++| -|++.++++|.+-....|.. .|- + ..+...-| .....++
T Consensus 95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~ 172 (200)
T CHL00028 95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISED 172 (200)
T ss_pred EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999 69999999998876554421 121 1 11122222 2444566
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSE 187 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (539)
+-....++|+||+++||||+|+.+.
T Consensus 173 ~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 173 MERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred hhcCccCCHHHHHHcCCCcEEeecC
Confidence 6777889999999999999998543
No 243
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.04 E-value=7.8e-06 Score=80.31 Aligned_cols=114 Identities=22% Similarity=0.199 Sum_probs=82.2
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHC--CC-----eEEEEeCChHHHH---HHHHHHHHH--HHhhHhcCCCCHHHHHHH
Q 009256 305 PRGVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLL---KGIKTIEAN--VRGLVTRGKLTQDKANNA 372 (539)
Q Consensus 305 ~~~~~kI~iIG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~~~~~---~~~~~i~~~--~~~~~~~~~~~~~~~~~~ 372 (539)
.+...||+|||.|+||++||+.+..+ ++ +|..|-..++.-. .+.+-|+.. --+|+....+.
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP------- 90 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLP------- 90 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCC-------
Confidence 34456899999999999999988764 22 6888866554333 333333221 11333333332
Q ss_pred hhcccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 009256 373 LKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 373 ~~~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
.++..++|+ +++.+||++|-.+| .+....++++|..++++++..+|.+.++..
T Consensus 91 -~NvvAv~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 91 -ENVVAVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred -CCeEecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 457778888 88999999999999 677889999999999999988888777664
No 244
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.03 E-value=4.5e-06 Score=77.63 Aligned_cols=140 Identities=20% Similarity=0.291 Sum_probs=93.6
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEE--EecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIV--LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vv--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.|+.| ++.++...+.+.|..++.++..+-+. |.+ .|+|+.. ...+. +.|.
T Consensus 19 i~l~g~----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INS------pGG~v~~----------------g~~i~-~~i~ 71 (182)
T PF00574_consen 19 IFLNGP----IDEESANRLISQLLYLENEDKNKPINIYINS------PGGDVDA----------------GLAIY-DAIR 71 (182)
T ss_dssp EEEESS----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEE------CEBCHHH----------------HHHHH-HHHH
T ss_pred EEECCc----cCHHHHHHHHHHHHHHhccCCCceEEEEEcC------CCCccHH----------------HHHHH-HHHH
Confidence 445554 88899999999888774332222222 333 3344321 23455 7789
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh-----------------cccccc--
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLV-- 154 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~v-- 154 (539)
.++.|+++.+.|.|.+.|.-++++||. |++.+++.|.+-+...+... .... .+...-
T Consensus 72 ~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~tg~ 149 (182)
T PF00574_consen 72 SSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAERTGL 149 (182)
T ss_dssp HSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999 89999999998877554321 1111 111111
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCc
Q 009256 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 155 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
......+++-....++|+||+++||||+|+..
T Consensus 150 ~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 150 SKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp -HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred cHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 23444556666778899999999999999753
No 245
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.03 E-value=1.4e-05 Score=80.63 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=65.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
||+|||+|.+|.++|..++..| .+|+++|+++++++.....+... ...... ..+ .+++++++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~~------~~i-~~~d~~~l~~ 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVKP------VRI-YAGDYADCKG 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccCC------eEE-eeCCHHHhCC
Confidence 7999999999999999999999 58999999988765322222111 000000 112 2456688999
Q ss_pred cCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 388 aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
||+||.+++. +....+++.+++.++.+.+.+++
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv 114 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV 114 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9999999864 33345566677888776655443
No 246
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.02 E-value=2.9e-05 Score=78.46 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=72.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|||||+|.+|+.+|..+..-|.+|.+||+ .+...... .......++ +.++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 5899999999999999999999999999999 43322211 112223344 5689
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
.||+|+..+|-..+.+.-+=++....++++++++..+-+-.+ ..+...+.
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH
Confidence 999999999988876555546677789999987744434333 34544443
No 247
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.01 E-value=3e-05 Score=73.49 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=111.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
++|++||+|.|..+++..+...|. +++.+-.+......-. -.. +.-.+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~----------~~~------------g~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMF----------EAL------------GVKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhh----------hcC------------CceeeechHHH
Confidence 379999999999999999999986 4555544222211100 011 22223333467
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~~~ 463 (539)
++.+|+++.++- +.....++.++...+..+.|++|...+..++.+...++.+.|++...++.|..++.... +..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 789999999984 66677777777666667779999999999999988888778999999999988776666 345677
Q ss_pred CcHHHHHHHHHHHHHcCcee
Q 009256 464 TSAQVILDLMTVGKIIKKVP 483 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~ 483 (539)
...+..+.+.+++...|.-.
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 78888899999999999643
No 248
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.99 E-value=0.00038 Score=67.67 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-.++++-++...+.++.+++. .+-+|-|.=.++++. |.+-. ..-......+.+ ..+...++|+|+.|
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE----------~~G~~~~ia~~~-~~~s~~~VP~IsVI 143 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE----------ERGQGEAIARNL-MEMSDLKVPIIAII 143 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH----------hccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467788888888888888765 455665543333332 33211 001122233444 45788899999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccc-cCHHHHHHHHHcCCCCCHHHHHHcCCcceec
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 184 (539)
-|.|.|||......||++++.+++.|+. +++-|.+..+-+- --...+.+.+ .+++.++++.|+||+|+
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii 212 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVI 212 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEec
Confidence 9999999888888999999999988764 2223333333221 1112223333 77999999999999999
Q ss_pred Ccc
Q 009256 185 TSE 187 (539)
Q Consensus 185 ~~~ 187 (539)
|+.
T Consensus 213 ~e~ 215 (256)
T PRK12319 213 PEH 215 (256)
T ss_pred CCC
Confidence 753
No 249
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.98 E-value=0.00014 Score=69.91 Aligned_cols=99 Identities=14% Similarity=0.235 Sum_probs=77.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEE
Q 009256 23 PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (539)
Q Consensus 23 p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~i 102 (539)
|-.+.++.+..+++.++++....+..+- ++|.. -|+++. ...++. +.|.+++.|++
T Consensus 67 Pi~~~I~i~dse~v~raI~~~~~~~~Id-Lii~T------pGG~v~----------------AA~~I~-~~l~~~~~~v~ 122 (285)
T PF01972_consen 67 PIYRYIDIDDSEFVLRAIREAPKDKPID-LIIHT------PGGLVD----------------AAEQIA-RALREHPAKVT 122 (285)
T ss_pred ccceeEcHhhHHHHHHHHHhcCCCCceE-EEEEC------CCCcHH----------------HHHHHH-HHHHhCCCCEE
Confidence 3346788999999999999887766553 33432 233221 112344 66889999999
Q ss_pred EEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcc
Q 009256 103 AAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG 145 (539)
Q Consensus 103 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g 145 (539)
+.|+..|+.+|.-+||+||-+++++.+.+|--...+|-.|..+
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 9999999999999999999999999999999999999888644
No 250
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.97 E-value=8.2e-05 Score=69.47 Aligned_cols=138 Identities=20% Similarity=0.161 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++.++...+...|..++.++..+-|.+.=. |.|+|+. ....++ +.|...+.||...+-
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~g~~I~-d~l~~~~~~v~t~~~ 92 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSIT----------------AGLAIY-DTMQFIKPDVSTICI 92 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEE
Confidence 3677788888888888887654444544311 1233321 123455 667778888888889
Q ss_pred CccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchh---------------hccccccC--HHHHHHHHHcCC
Q 009256 107 GLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLLSK 167 (539)
Q Consensus 107 G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r~vG--~~~a~~l~l~g~ 167 (539)
|.|.+.|.-+++++| .|++.++++|.+-+..-|......-. ..+.+.-| .....+++-.+.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 999999999999766 69999999998866543321111100 01222333 355667777889
Q ss_pred CCCHHHHHHcCCcceecC
Q 009256 168 SITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 168 ~~~a~eA~~~Glv~~vv~ 185 (539)
.++|+||+++||||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 999999999999999974
No 251
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=1.7e-05 Score=78.45 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=56.4
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|+|||.| .||.+||..|.++|++|++|++....++ +.++.
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 489999996 9999999999999999999986643211 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++....+.... +++++++++.+..
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvgin 233 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVGIN 233 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEeccc
Confidence 999999998655443332 7899998876533
No 252
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.94 E-value=2.6e-05 Score=78.39 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=52.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
||+|||+|.+|.++|..++..|. +++++|++++.++.....+.+..... ... + -.+. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~-~~~--~--------~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT-YST--N--------TKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC-CCC--C--------EEEE-ECCHHHhCC
Confidence 69999999999999999999886 89999999887665444332211000 000 0 1233 456789999
Q ss_pred cCEEEEcc
Q 009256 388 VDMVIEAV 395 (539)
Q Consensus 388 aDlVi~av 395 (539)
||+||.+.
T Consensus 69 aDivvita 76 (307)
T cd05290 69 ADIIVITA 76 (307)
T ss_pred CCEEEECC
Confidence 99999886
No 253
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.94 E-value=1.4e-05 Score=86.65 Aligned_cols=103 Identities=16% Similarity=0.050 Sum_probs=72.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|.+|+.||+.... +... +.+ ....+++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 58999999999999999999999999999985321 1110 001 1222344 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+ ..+...+.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 99999999987776554445667789999988865555333 35555443
No 254
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.91 E-value=2.8e-05 Score=78.45 Aligned_cols=123 Identities=22% Similarity=0.230 Sum_probs=75.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
+||+|+|+ |.+|..++..++..|+ +|+++|+++ +.++.....+. +.+...+. ..+++.+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence 48999998 9999999999999987 599999965 33333222221 11111110 01355566677
Q ss_pred CCCCcCEEEEcccC------C-h-------hHHHHHHHHHHHhCCCCeEEEecCCCCChHH--HhhccCC-CCcEEEe
Q 009256 384 EFKDVDMVIEAVIE------S-V-------PLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSS-QDRIIGA 444 (539)
Q Consensus 384 ~~~~aDlVi~avpe------~-~-------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~--i~~~~~~-~~r~vg~ 444 (539)
++++||+||.++.. + . ...+.+.+.|.++.+ +.+++..++..++.. +...... +.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 89999999999841 1 1 335555666777775 555555666655443 2222222 3456665
No 255
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.90 E-value=3.1e-05 Score=77.02 Aligned_cols=104 Identities=26% Similarity=0.337 Sum_probs=67.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|+++|..|...++ ++.++|++++..+.-..++.+..... .....+....++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~------------~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPL------------GSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhc------------cCceEEecCCChhhhc
Confidence 489999999999999999987754 89999999665444322222111000 0002233334478999
Q ss_pred CcCEEEEcc--cC------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 387 ~aDlVi~av--pe------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++|+|+++. |- +..+.+++.+++.++.++ .+++..|..
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~ivlVvtNP 120 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIVLVVTNP 120 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEEEEecCc
Confidence 999999887 32 445666666778888774 444433433
No 256
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.89 E-value=3.4e-05 Score=76.91 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=61.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|+|+|.||..+|..|...|.+|++++|+++..+.+.+ .+. . .+. ..++ +.+++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~-----------~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITE-----------MGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CCC-e---------eec-HHHHHHHhcc
Confidence 48999999999999999999999999999999876544311 110 0 000 1122 45789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+|+||.++|...- -++..+.+++++++++.++
T Consensus 210 aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence 9999999984321 1334456777887776555
No 257
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.87 E-value=2e-05 Score=85.39 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=72.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|.+|++||+.... +... ..+ +... ++ +.++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 58999999999999999999999999999986421 1110 001 1222 34 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+ ..+...+.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh
Confidence 99999999988776655546788889999988865555443 34544443
No 258
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.84 E-value=1.1e-05 Score=90.43 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=48.2
Q ss_pred CcccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 488 NCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 488 ~~~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
..+||++||++.+++||+.+++++|+ +++|||.++ .++|||. |||+++|.++
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~G 663 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLG 663 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhC
Confidence 46899999999999999999999996 999999999 8999995 9999999764
No 259
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.84 E-value=0.00064 Score=69.35 Aligned_cols=138 Identities=16% Similarity=0.086 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
.+++++-++.....++.++.. .+-+|-|-=.++ |..|.+-.+.. ......+.+ ..+....+|+|+.|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpG-A~pG~~AEe~G----------qa~aIAr~l-~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPG-AYAGIKAEELG----------QGEAIAFNL-REMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCC-cCCCHHHHHHh----------HHHHHHHHH-HHHhcCCCCEEEEE
Confidence 468899999999999988765 345555532222 32333322210 111222344 45789999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.+.+||.....+||++++.+++.++. +-|.+..+..+...--...|.+ .-.++|+++++.|+||+|+|
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence 9999777655555789999999988763 1244444443333222223333 34899999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
+
T Consensus 337 E 337 (431)
T PLN03230 337 E 337 (431)
T ss_pred C
Confidence 4
No 260
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.84 E-value=1.1e-05 Score=90.64 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=48.5
Q ss_pred CcccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 488 NCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 488 ~~~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
-.+||+.||++.+++||+++++++|+ +++|||.++ .++|||+ |||+++|.++
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~G 670 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLG 670 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhC
Confidence 46899999999999999999999996 999999999 8999997 9999999764
No 261
>PRK05442 malate dehydrogenase; Provisional
Probab=97.84 E-value=3.3e-05 Score=78.21 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=67.8
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 377 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (539)
..||+|||+ |.+|.++|..+...|. +++++|++++ +++....++.+....... . -.++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~ 71 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA-G-----------VVIT 71 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC-C-----------cEEe
Confidence 359999998 9999999999988765 7999999653 233322222211100000 0 1222
Q ss_pred ccCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 378 ~~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
..+++++++||+||.+..- +..+.+++..+|.++.+++.+++..+....
T Consensus 72 -~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 72 -DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 3556899999999987631 234456666778888877777665554433
No 262
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.82 E-value=0.0013 Score=65.58 Aligned_cols=138 Identities=17% Similarity=0.072 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-.++++-++.....++.++.. .+-+|-|-=.++ |-.|.+-.+.. ......+.+ ..+....+|+|+.|
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpG-a~~g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV 196 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPG-AYPGIGAEERG----------QSEAIARNL-REMARLGVPVICTV 196 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC-CCCCHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 467888999999988888765 455555543333 33343322110 112222344 45788999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.|.|||..-...||++++.+++.++. +++-|.+..|-+- ..++.+..- -..++++++++.|+||.|+|
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEecc
Confidence 9999888875555699999999988763 3333333333331 122322222 36778999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
+
T Consensus 267 e 267 (316)
T TIGR00513 267 E 267 (316)
T ss_pred C
Confidence 4
No 263
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.82 E-value=0.0013 Score=65.50 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-.++++-+......++.++.. .+-+|-|--.+++++ |.+-.+.. ......+.+ ..+....+|+|+.|
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~G----------~~~aiar~l-~~~a~~~VP~IsVV 199 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKLG----------QGEAIAVNL-REMFSFEVPIICTI 199 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHHh----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 467899999999999988765 345555543333333 33221100 111222333 34678999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.|.|||......||++++.+++.|+. +-|.++.+..+.. ..+|.+ ....-.++|++.+++|+||+|+|
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence 9999888865555699999999998874 2244444433332 234433 34556899999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
+
T Consensus 270 E 270 (322)
T CHL00198 270 E 270 (322)
T ss_pred C
Confidence 4
No 264
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.80 E-value=1.9e-05 Score=71.28 Aligned_cols=102 Identities=27% Similarity=0.340 Sum_probs=65.9
Q ss_pred HHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCccc------------CCCC---------CCcchh-----
Q 009256 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVI---------PGFGGT----- 147 (539)
Q Consensus 94 i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~---------p~~g~~----- 147 (539)
..+..|||+|.++|.|..+|+.|+.+||-+++.+.+.++..-+. +|+- ...+.+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 45789999999999999999999999999999999877764433 2321 111100
Q ss_pred ----hcc-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHH
Q 009256 148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (539)
Q Consensus 148 ----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (539)
..+ .|-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 000 1111111 12335789999999999999999999888877666554
No 265
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.79 E-value=0.00015 Score=75.98 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=71.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-------CC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~- 377 (539)
-||+|||+ |.+|..+|..++.. |+ +++++|++++.++...-++++....+. ..+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~--------------~~v~i 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL--------------REVSI 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc--------------CceEE
Confidence 48999999 99999999999988 66 899999999987766555443321111 1233
Q ss_pred ccCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 378 ~~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+.+++++++||+||.+..- +..+.+++.+.|.++..++.+++..+..
T Consensus 167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 24566999999999987621 2334555666677755667766655543
No 266
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.79 E-value=0.001 Score=66.39 Aligned_cols=138 Identities=18% Similarity=0.126 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-+++++-++.....++.++.. .+-+|-|.=.+++++ |.+-.+ .-......+.+ ..+....+|+|+.|
T Consensus 130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI 196 (319)
T PRK05724 130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV 196 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467889898888888888765 455666643333333 432211 00112233444 55789999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.|.|||..-...||++++.+++.|+ ++++-|.+..|-+- ..++.+..- ...+++.++++.|+||+|+|
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence 999988887555569999999998876 33334444444332 233444333 66689999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
+
T Consensus 267 E 267 (319)
T PRK05724 267 E 267 (319)
T ss_pred C
Confidence 4
No 267
>PLN02928 oxidoreductase family protein
Probab=97.78 E-value=3.9e-05 Score=78.59 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=73.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|.+|++||++.......... ...... ...........++ +.++.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLL--------IPNGDV-----DDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhc--------cccccc-----cccccccCcccCHHHHHhh
Confidence 589999999999999999999999999999974321110000 000000 0000000012234 66899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+.++|-..+...-+-++....++++++++..+-+-. -..+...+.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998777655444667788999999886555433 335555444
No 268
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.78 E-value=0.00025 Score=67.23 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--ecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.++..+...+...|..++..+.-+-|.+ .+-|+...+ ...++ +.|...+.||...
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a----------------------GlaIy-d~m~~~~~~V~tv 118 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA----------------------GLGIY-DTMQFISSDVATI 118 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh----------------------HHHHH-HHHHhcCCCEEEE
Confidence 4777888888887766654332222322 333321111 12455 6788899999999
Q ss_pred EcCccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHH
Q 009256 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM 162 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l 162 (539)
+-|.|.+.|.-|++++|. |++.++++|.+-...-|.. |-+. .+...-| .....++
T Consensus 119 ~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~---G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~ 195 (221)
T PRK14514 119 CTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ---GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWAD 195 (221)
T ss_pred EEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999996 8999999988766543321 1111 1122223 2445566
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
+-....++|+||+++||||+|+..
T Consensus 196 ~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 196 SDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred hhcCccCCHHHHHHcCCccEEeec
Confidence 677889999999999999999853
No 269
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.78 E-value=0.00011 Score=74.24 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=75.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+...|.+|..||+.....+ ..+. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~----------------------------~~~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN----------------------------EEYE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc----------------------------cCce-eecHHHHhhc
Confidence 5899999999999999999989999999998632100 0011 1133 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccCCC-CcEEEeccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQ-DRIIGAHFF 447 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~~~-~r~vg~h~~ 447 (539)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+- .-..+...+... -. .++..|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999877765555566778899999987555443 334555555432 23 455544
No 270
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.76 E-value=2.3e-05 Score=80.77 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=67.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||..+|..+...|++|.+||+.....+. ... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~----------------------------~~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEG----------------------------DGD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccccc----------------------------Ccc-ccCHHHHHhh
Confidence 58999999999999999999999999999985431100 011 1233 55689
Q ss_pred cCEEEEcccCChh---HHHHHH-HHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~---~~~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|-..+ ....++ ++....++++++++..+-+-.+ ..+...+
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 9999999996552 123334 4566778999988865555443 3444444
No 271
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.74 E-value=0.0015 Score=64.88 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=105.1
Q ss_pred cCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-..|.-|.|. .-+++...-+.+..+++.+... .+-+|.|.-.| |+.++|-. .....+.+.. ..
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqEgi-----~sL~~~ak~~-~a 186 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQEGL-----LSLMQMAKTS-AA 186 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhhhh-----hHHHhHHHHH-HH
Confidence 4444445556664 4899999999999999998766 46677776444 22222200 0001111111 22
Q ss_pred HHHHHHhCCCcEEEEEcCccccchh-HhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~ 168 (539)
+ .++.....|.|+.+.|+|+||+. ..++.+|+++|.++|.+++...+ .+...+|. + + .-+.
T Consensus 187 ~-~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e----~-l-pe~~ 248 (292)
T PRK05654 187 L-KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE----K-L-PEGF 248 (292)
T ss_pred H-HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh----h-h-hhhh
Confidence 2 33667789999999999999975 45778999999999988763221 01111111 0 0 1112
Q ss_pred CCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 009256 169 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (539)
Q Consensus 169 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (539)
-+++-+.+.|+||.|+++.++.....++.+.+...+
T Consensus 249 ~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 249 QRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQP 284 (292)
T ss_pred cCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCC
Confidence 267777899999999999999998888888765543
No 272
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.73 E-value=0.00011 Score=65.96 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+++.|+|.|..|.++|..|...|.+|+++|++|-++-++.. +.....+-.+++..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~------------------------dGf~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM------------------------DGFEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH------------------------TT-EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh------------------------cCcEecCHHHHHhhC
Confidence 47999999999999999999999999999999966444311 222222222678999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
|++|.+......+..+ ..+.+++++++++.++
T Consensus 80 di~vtaTG~~~vi~~e----~~~~mkdgail~n~Gh 111 (162)
T PF00670_consen 80 DIFVTATGNKDVITGE----HFRQMKDGAILANAGH 111 (162)
T ss_dssp SEEEE-SSSSSSB-HH----HHHHS-TTEEEEESSS
T ss_pred CEEEECCCCccccCHH----HHHHhcCCeEEeccCc
Confidence 9999887654433333 3446789999876554
No 273
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.71 E-value=0.0003 Score=65.66 Aligned_cols=137 Identities=19% Similarity=0.177 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++.++..++...|..++.++..+-|.+.=. |.|+|+.. ...++ +.|...+.||...+-
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~----------------g~aIy-d~m~~~~~~V~t~~~ 91 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYD----------------GLGIF-DTMQHVKPDVHTVCV 91 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhh----------------HHHHH-HHHHhcCCCEEEEEE
Confidence 4889999999999999886543344444211 22333221 12455 678889999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHHHH
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l~l 164 (539)
|.|.+.|.-|++++|- |++.++++|.+-...-|. .|.+. .+...-| .....+++-
T Consensus 92 G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~ 168 (196)
T PRK12551 92 GLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA---RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTD 168 (196)
T ss_pred EEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999985 889999998776553222 12110 1122223 234456666
Q ss_pred cCCCCCHHHHHHcCCcceecCcc
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSE 187 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~ 187 (539)
....++|+||+++||||+|++..
T Consensus 169 rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 169 RDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred cCcCCCHHHHHHcCCCcEEeccC
Confidence 77889999999999999998653
No 274
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.70 E-value=0.00033 Score=66.06 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=36.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|+|+|+|.||..+|+.|.+.|++|+++|+++++++...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 4799999999999999999999999999999988766653
No 275
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.68 E-value=0.00024 Score=73.25 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=68.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEE--eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~- 377 (539)
-||+|||+ |.+|.++|..++..|. .++++ |++++.++...-++......+. ..++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~--------------~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLL--------------REVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhc--------------CceEE
Confidence 48999999 9999999999998875 24445 8888887665444433221111 1233
Q ss_pred ccCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 378 ~~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+.+++++++||+||.+... +..+.+++...|.++.+++++++..+..
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 23456899999999987621 2344556666788877778876655533
No 276
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.68 E-value=6.4e-05 Score=78.76 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=71.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+...|.+|..||+.+.... .......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------~~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------GNARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc----------------------------CCceecCCHHHHHhh
Confidence 5899999999999999999999999999998642100 011122344 66799
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+..+|-..+.+.-+=++....++++++++..+-+-. ...+...+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 9999999998777555444667788999998875554433 334544443
No 277
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.67 E-value=0.0001 Score=74.74 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=63.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-N-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.||..++..+.. . ..+|++|+|++++.+.+.+.+.+ .+. .+....+. +++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av 187 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV 187 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence 479999999999999986654 3 47899999999998887655321 110 12233444 578
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++||+|+.+.+.... ++. .+.++++++|...++.
T Consensus 188 ~~aDIVi~aT~s~~p----vl~--~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 188 RQADIISCATLSTEP----LVR--GEWLKPGTHLDLVGNF 221 (314)
T ss_pred hcCCEEEEeeCCCCC----Eec--HHHcCCCCEEEeeCCC
Confidence 899999988875532 221 1457888866554443
No 278
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.67 E-value=0.00016 Score=72.50 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||.|||.|.+|..++..+...|.+|+++|+++++.+...+ .|. . .+ ...++ +.+++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~---------~~-~~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S---------PF-HLSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e---------ee-cHHHHHHHhCC
Confidence 48999999999999999999999999999999876544321 110 0 00 01122 55788
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+|+||.++|... +-++..+.++++.+|++..+.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998421 224455667788888765543
No 279
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.67 E-value=0.0022 Score=69.65 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-+++++-++-..+.++.++.. .+-+|-|-=.+++++ |.+-.+.. ....+.+.+ ..+....+|+|+.|
T Consensus 221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~G----------q~~aIArnl-~amasl~VP~ISVV 287 (762)
T PLN03229 221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNL-RTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHHh----------HHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467788888888888888765 344555532223332 33222210 112222334 45778999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.|.|||......||++++.+++.|+. +-|.++.+..+... .+|.+ ....-.++|++.+++|+||.|+|
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-AAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-AAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence 9999988887777899999999987653 22444433333222 22322 34556899999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
.
T Consensus 358 E 358 (762)
T PLN03229 358 E 358 (762)
T ss_pred C
Confidence 4
No 280
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.66 E-value=0.00043 Score=64.78 Aligned_cols=136 Identities=19% Similarity=0.273 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEE--EEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~v--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ia 103 (539)
-.++.++-..+...|-.++.++.-+-| -|.+.| +|+. ....++ +.|...+-||..
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~----------------~GlaIy-d~m~~~~~~V~T 90 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVY----------------AGLAIY-DTMRYIKAPVST 90 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchh----------------hHHHHH-HHHHhcCCCEEE
Confidence 357888888888888888764332222 223333 3321 123455 678899999999
Q ss_pred EEcCccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchh-h-----------------ccccccC--HHHHHH
Q 009256 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRLVG--LSKAIE 161 (539)
Q Consensus 104 av~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~l~r~vG--~~~a~~ 161 (539)
.+-|.|.+.|.-|++++|- |++.+++++-+-...-|. .|.. . .+.+.-| ...-.+
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~---~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~ 167 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF---RGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR 167 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999996 999999998876655443 2211 1 1122223 344456
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSE 187 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (539)
++-....++|+||+++||||+|+++.
T Consensus 168 ~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 168 DMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HhccCcccCHHHHHHcCCCcEEeccC
Confidence 66677889999999999999998653
No 281
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.66 E-value=0.00018 Score=70.97 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=53.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|||+|.||..++..+.+. +++ +.++|+++++.+.+.+.. .....+++ +.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-----------------------~~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-----------------------GAKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-----------------------CCeeECCHHHH
Confidence 4899999999999999999876 455 557899998766553210 11223444 44
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEK 411 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~ 411 (539)
+.++|+|++|.|. ....++..++.+
T Consensus 59 l~~~DvVvi~a~~--~~~~~~~~~al~ 83 (265)
T PRK13304 59 VEDVDLVVECASV--NAVEEVVPKSLE 83 (265)
T ss_pred hcCCCEEEEcCCh--HHHHHHHHHHHH
Confidence 5889999999974 333455554443
No 282
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.65 E-value=6.8e-05 Score=75.94 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=66.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
.||+|||+ |.+|.++|..++..|. +++++|++++. ++....++.+....... . -.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~-~-----------~~i~- 69 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLA-E-----------IVIT- 69 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccC-c-----------eEEe-
Confidence 48999999 9999999999998886 89999996533 33222222111000000 0 1232
Q ss_pred cCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 379 VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 379 ~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+.+++++++||+||.+... +..+.+++..+|.++.+++.+++..+..
T Consensus 70 ~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 70 DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 4556899999999987621 2345566667788888656666544433
No 283
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.64 E-value=0.00011 Score=74.31 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=68.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
-||+|||+ |.+|+++|..+...|. +++++|+++ +.++.....+.+....... + -.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~-~-----------~~i~- 70 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA-G-----------VVAT- 70 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccC-C-----------cEEe-
Confidence 38999998 9999999999998885 899999975 3333332222211100000 0 0122
Q ss_pred cCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 379 VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 379 ~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
..+++++++||+||.+... +..+.+++..++.++.+++.+++..+...
T Consensus 71 ~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 71 TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 3556899999999987621 34456666777888887677666555433
No 284
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.64 E-value=0.00012 Score=73.71 Aligned_cols=99 Identities=17% Similarity=0.281 Sum_probs=63.8
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-c-CC--c
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y 382 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~-~~--~ 382 (539)
||+|||+ |.+|+++|..++..|+ +++++|+++ . +...-++. .... ...+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a-~g~a~DL~--------~~~~--------~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-A-AGVAADLS--------HIPT--------AASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-C-cEEEchhh--------cCCc--------CceEEEecCCCchH
Confidence 6999999 9999999999998886 899999987 1 11101111 1100 012332 2 22 5
Q ss_pred cCCCCcCEEEEccc--------------CChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 383 ~~~~~aDlVi~avp--------------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
+++++||+||.+.. .+..+.+++.+.+.++. |+++++..|....
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvD 120 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVN 120 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchh
Confidence 89999999998762 24455666667777775 5555554454443
No 285
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.63 E-value=0.0022 Score=64.23 Aligned_cols=188 Identities=13% Similarity=0.064 Sum_probs=104.3
Q ss_pred CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHh-cCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccC
Q 009256 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (539)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe 397 (539)
||+.+|..|+++|++|++|+|+ +..+...+. .+ .... .+.. ....+..+++.+.+..+|+||.+++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~---Gl-~i~~~~~~~-------~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQE---GL-RIVSLGGEF-------QFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHC---Cc-EEEecCCcE-------EEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 444443221 00 0000 0100 00022334455557789999999974
Q ss_pred ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhhccCCCCcEEEe-ccCCCCCCCCe---------eeeecCCCCcH
Q 009256 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGA-HFFSPAHVMPL---------LEIVRTERTSA 466 (539)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~-i~~~~~~~~r~vg~-h~~~p~~~~~~---------vei~~~~~t~~ 466 (539)
. ....+++.+.+++.++++|++...++...+ +...++. .++++. -++..-...+. +.+-..+. +.
T Consensus 70 ~--~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~ 145 (293)
T TIGR00745 70 Y--QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-EN 145 (293)
T ss_pred h--hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-ch
Confidence 4 356778889999999888888777776543 4444432 233322 11111011111 11111111 22
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcc------------------------cchh-----hcchHHHHHHHHHHHHc-CC--C
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCT------------------------GFAV-----NRAFFPYSQSARLLVSL-GV--D 514 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~------------------------g~v~-----nrl~~~~~~Ea~~l~~~-G~--~ 514 (539)
+..+.+..++...|.......|.. |.+. -+++..++.|...+++. |+ +
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~ 225 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLP 225 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 455667777777665554444421 1111 13344667799888876 86 5
Q ss_pred HHHHHHHH
Q 009256 515 VFRIDSAI 522 (539)
Q Consensus 515 ~~~id~a~ 522 (539)
.+.+++.+
T Consensus 226 ~~~~~~~~ 233 (293)
T TIGR00745 226 DDEVEELV 233 (293)
T ss_pred HHHHHHHH
Confidence 55566655
No 286
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.62 E-value=0.00022 Score=73.72 Aligned_cols=147 Identities=12% Similarity=0.084 Sum_probs=91.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEE------EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~------~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
++|+|||.|.+|...|..+...|++|+ ++|.+....+.+.+ +.+.+.+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~------------------------dGF~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE------------------------NGFKVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh------------------------cCCccCCHH
Confidence 589999999999999999999999999 44444444333321 122332222
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC----------CC
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV 452 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~----------~~ 452 (539)
++++.||+|+..+|+. . ...+++++.++++++..+.- +-+..+.......+....++-+-|-.|- .-
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 7789999999999977 3 66777899999999998763 3333333211111222233333332221 11
Q ss_pred CCeeeeec-CCCCcHHHHHHHHHHHHHcCce
Q 009256 453 MPLLEIVR-TERTSAQVILDLMTVGKIIKKV 482 (539)
Q Consensus 453 ~~~vei~~-~~~t~~e~~~~~~~l~~~lg~~ 482 (539)
.|.+..+- -...+-.+.+.+..+...+|..
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence 12222222 1345667889999999999876
No 287
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.62 E-value=0.00017 Score=72.51 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=63.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-C-C--
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D-- 381 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~-~-- 381 (539)
+||+|||+ |.+|+++|..++..|+ +++++|++ .++...-.+.+ ... ...+... . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~--------~~~--------~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSH--------INT--------PAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHh--------CCC--------cceEEEecCCCch
Confidence 38999999 9999999999998885 89999998 22221111111 100 0134422 2 2
Q ss_pred ccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 382 ~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
++++++||+||.+... +..+.+++.+.+.++. |+++++..+...
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 120 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPV 120 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCch
Confidence 5899999999988621 3445556666777775 466665444443
No 288
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.60 E-value=0.0023 Score=63.16 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=102.6
Q ss_pred cCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-..|.-|++. .-+++....+.+..+++.+... .+-+|.|+..|++ -+.|-. .....+.... ..
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~-----~sL~~~ak~~-~~ 185 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEAL-----LSLMQMAKTS-AA 185 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccch-----hHHHhHHHHH-HH
Confidence 3433344445554 4799999999999999988755 5667777654432 121100 0011111111 12
Q ss_pred HHHHHHhCCCcEEEEEcCccccchh-HhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~ 168 (539)
+ .++.....|.|+.+.|+|+||+. ..++.+|+++|.++|.+++...++ +...+|. -+.-+.
T Consensus 186 ~-~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e------~lpe~~ 247 (285)
T TIGR00515 186 L-AKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVRE------KLPEGF 247 (285)
T ss_pred H-HHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcC------ccchhc
Confidence 2 34667789999999999999975 466799999999999888743221 1111110 011112
Q ss_pred CCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 169 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 169 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
-+|+-+.+.|+||.|+++.++.+...++...+...
T Consensus 248 q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~~ 282 (285)
T TIGR00515 248 QTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQNL 282 (285)
T ss_pred CCHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhhC
Confidence 25666888999999999999998888887765443
No 289
>PLN00106 malate dehydrogenase
Probab=97.58 E-value=0.00012 Score=73.93 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=62.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc---ccCC-
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK---GVLD- 381 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~- 381 (539)
.||+|||+ |.+|+.+|..++..++ +++++|+++ .+...-.+.+. .. .-.+. ..++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~----~~------------~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHI----NT------------PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhC----Cc------------CceEEEEeCCCCH
Confidence 49999999 9999999999997776 899999987 11100011000 00 00122 2223
Q ss_pred ccCCCCcCEEEEccc--------------CChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 382 ~~~~~~aDlVi~avp--------------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
++++++||+||.+.- .+....+++.+.+.++.+ +.+++..|...
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivivvSNPv 138 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNIISNPV 138 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCCc
Confidence 378999999998762 244455666667777774 45554444444
No 290
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.57 E-value=6.1e-05 Score=77.50 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.||+.+|..+...|.+|.+||+.... .. .... ..++ +.++.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~~--------------------------~~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--RG--------------------------DEGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--cc--------------------------cccc-cCCHHHHHhh
Confidence 48999999999999999999999999999964321 00 0001 1234 55789
Q ss_pred cCEEEEcccCChh---HHHHHH-HHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~---~~~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+..+|-..+ -...++ ++....++++++++..+-+-.+ ..+...+
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCL 221 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHH
Confidence 9999999985443 112233 4566778999998855544333 3444444
No 291
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.56 E-value=0.00013 Score=73.90 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=71.1
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|||||.|.+|..+|+.+. ..|.+|..||+....... . .. ..... ++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~--~----------~~-------------~~~~~-~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE--E----------RF-------------NARYC-DLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH--H----------hc-------------CcEec-CHHHHHH
Confidence 58999999999999999987 678899999987421110 0 00 11112 34 5679
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~ 436 (539)
.||+|+.++|-..+.+.-+=++....++++++++..+-+ +.-..+...+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999988876555546677889999988754434 33345555554
No 292
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.56 E-value=0.00022 Score=70.57 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=50.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
..+|||||+|.||..++..+.+. +++|. ++|+++++.+...+.. +.....+++ +
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~----------------------g~~~~~~~~ee 63 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL----------------------RRPPPVVPLDQ 63 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc----------------------CCCcccCCHHH
Confidence 46899999999999999999873 78876 8899988766543211 111223344 4
Q ss_pred CCCCcCEEEEcccCCh
Q 009256 384 EFKDVDMVIEAVIESV 399 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~ 399 (539)
.+.++|+|++|.|.+.
T Consensus 64 ll~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 64 LATHADIVVEAAPASV 79 (271)
T ss_pred HhcCCCEEEECCCcHH
Confidence 4578999999999654
No 293
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.54 E-value=0.00012 Score=64.59 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=53.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|||+|-+|.+++..|...|.+ |++++|+.++++.+.+.+ ....+ .....++. +.+.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~~ 74 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEALQ 74 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHHh
Confidence 5899999999999999999999986 999999999988775542 00000 01112233 4567
Q ss_pred CcCEEEEcccCChh
Q 009256 387 DVDMVIEAVIESVP 400 (539)
Q Consensus 387 ~aDlVi~avpe~~~ 400 (539)
++|+||.|+|....
T Consensus 75 ~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 75 EADIVINATPSGMP 88 (135)
T ss_dssp TESEEEE-SSTTST
T ss_pred hCCeEEEecCCCCc
Confidence 89999999986543
No 294
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.52 E-value=0.00019 Score=72.49 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=72.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+++||||.|.+|..+|+.+...|.+|..||+++. -+.. +. ....+.+ + +.++.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~-~~-----------------------~~~~y~~-l~ell~~ 200 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE-KE-----------------------LGARYVD-LDELLAE 200 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH-hh-----------------------cCceecc-HHHHHHh
Confidence 5899999999999999999977889999999874 1111 00 1123333 4 67899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+..+|-..+...-+=++..+.++++.+++..+-+-. ...+...+.
T Consensus 201 sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 201 SDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred CCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998887665555677888999998874443433 334444443
No 295
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00018 Score=71.47 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=55.5
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
++|+||| .|.||.+||..|.++|++|++|+ ++++. + +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence 5899999 99999999999999999999995 66421 1 3357
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.||+||.|++....+... ++++++++++.+..
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGin 232 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGIN 232 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCCc
Confidence 899999999865433322 27899988876543
No 296
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.52 E-value=0.00026 Score=71.61 Aligned_cols=92 Identities=20% Similarity=0.167 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..+...| .+|+++|+++++.+.+.+.+.. ...+ .++. +.+.
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--------~~~~-------------~~~~~~~l~ 237 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--------NAVP-------------LDELLELLN 237 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--------eEEe-------------HHHHHHHHh
Confidence 48999999999999999998866 6899999999887665443210 0000 1122 4567
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhC-CCCeEEEecC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~-~~~~ii~s~t 423 (539)
++|+||.|++.+.. ...+..+.... ..+.++++.+
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 89999999986554 33334333222 2455666554
No 297
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.50 E-value=0.00016 Score=73.15 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=70.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+...|.+|+.||+.... .. . .. ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~---------------~~-~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------R---------------EG-YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------c---------------cc-cCCHHHHHHh
Confidence 58999999999999999998889999999975321 00 0 00 1133 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~ 436 (539)
||+|+.++|-..+...-+=++....++++++++..+-+ +....+...+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999977775544446677889999988755544 33345555554
No 298
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.49 E-value=0.0016 Score=71.41 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=72.7
Q ss_pred cCcEEEEEeCC-C--C---CCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC
Q 009256 12 NDGVAIITLIN-P--P---VNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (539)
Q Consensus 12 ~~~v~~i~l~~-p--~---~Nal~----------~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~ 75 (539)
++.+..|-++. + + .+.+. ...+.++.++++.+..|+.|++|||.-.+ +.|.++..+
T Consensus 41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----- 112 (584)
T TIGR00705 41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----- 112 (584)
T ss_pred CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH-----
Confidence 56788888873 3 1 23221 23578999999999999999999998642 113322211
Q ss_pred CCcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeC
Q 009256 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL 133 (539)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~ 133 (539)
+...+.+ +.+....|||||..++++ -+|+.|+.+||-+++.+...+++
T Consensus 113 --------~ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 113 --------VEIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred --------HHHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEe
Confidence 1122333 346678899999888775 78899999999999999887755
No 299
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.48 E-value=0.0003 Score=71.59 Aligned_cols=95 Identities=9% Similarity=-0.012 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.||...+..+.. ...+|.+||+++++.+...+++.+ .+ -.+...++. +++
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~eav 190 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREAV 190 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHHh
Confidence 579999999999997766654 356999999999998877654421 11 012334455 778
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
++||+|+.|+|....+.. .+.+++++.|....+..+
T Consensus 191 ~~aDiVitaT~s~~P~~~------~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 191 EGCDILVTTTPSRKPVVK------ADWVSEGTHINAIGADAP 226 (325)
T ss_pred ccCCEEEEecCCCCcEec------HHHcCCCCEEEecCCCCc
Confidence 999999999986543321 235689988776655433
No 300
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.47 E-value=0.00015 Score=73.57 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=70.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|+.+...|.+|..||+.... .. .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------------------cc-ccCHHHHHHh
Confidence 58999999999999999999899999999986321 00 00 0123 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+-. -..+...+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998777655555667788999998875554433 345555444
No 301
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.46 E-value=0.00013 Score=74.03 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=63.3
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG- 378 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~- 378 (539)
||+|||+ |.+|..++..|+..|+ +++++|+++ +.++.....+.+..... ....+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~--------------~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL--------------LKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccc--------------cCCcEEe
Confidence 7999999 9999999999998664 599999987 44332211111110000 011112
Q ss_pred cCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 379 VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 379 ~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
..+++++++||+||.+... +..+.+++..+|.++.+++.+++..+.
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 3445889999999977521 344566666778888655665554443
No 302
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.45 E-value=0.0007 Score=62.60 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=66.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEE--EeeCCceEeCCcccCCCCCCcchhh-----------------
Q 009256 88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQ----------------- 148 (539)
Q Consensus 88 ~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~--ia~~~a~f~~pe~~~Gl~p~~g~~~----------------- 148 (539)
.++ +.+...+.||...+-|.|...|.-|++++|-. ++.+++++-.-... |.+-|.. +-
T Consensus 76 AIy-dtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a-~Di~i~A~ei~~~~~~l~~ 152 (200)
T COG0740 76 AIY-DTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQA-SDIEIHAREILKIKERLNR 152 (200)
T ss_pred HHH-HHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCH-HHHHHHHHHHHHHHHHHHH
Confidence 455 67899999999999999999999999999885 77777777654333 2211110 10
Q ss_pred ccccccCHHH--HHHHHHcCCCCCHHHHHHcCCcceecCcch
Q 009256 149 RLPRLVGLSK--AIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188 (539)
Q Consensus 149 ~l~r~vG~~~--a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (539)
.+...-|... -.+.+-....++|+||+++||||+|....+
T Consensus 153 i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 153 IYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 1111122222 223333567889999999999999986543
No 303
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.44 E-value=9.4e-05 Score=83.10 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=44.7
Q ss_pred cchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 491 GFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 491 g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
..++||++.++++|+..++++|+ +|+|||.++ .++|||+ |||+++|.++
T Consensus 625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~G 679 (715)
T PRK11730 625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLG 679 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhC
Confidence 45889999999999999999994 999999999 7999986 9999999764
No 304
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.44 E-value=0.0035 Score=60.30 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=93.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHH---Hh
Q 009256 21 INPPVNALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI---ED 96 (539)
Q Consensus 21 ~~p~~Nal~~~~~~~l~~~~~~~-~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~ 96 (539)
|+|.. .++.+-...+...+..+ +.+..+-+|.|-=. +.|-.|..-++.. .......++ ..+ .+
T Consensus 39 ~~~~~-~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG~~~g~~aE~~G----------~~~a~A~l~-~a~a~a~~ 105 (238)
T TIGR03134 39 VVPDA-EVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PSQAYGRREELLG----------INQALAHLA-KALALARL 105 (238)
T ss_pred ECCCC-cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CCCCCCHHHHHHH----------HHHHHHHHH-HHHHHhhc
Confidence 44433 57777777777777774 55566666666433 2344443322211 111122222 334 45
Q ss_pred CCCcEEEEEcCccccchh-HhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcC--CCCCHHH
Q 009256 97 CKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEE 173 (539)
Q Consensus 97 ~~~p~iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g--~~~~a~e 173 (539)
.+.|+|+.|-|.++|||+ .+.+.+|.++|-+++.++ .++.-+.+..+-+-. ..+.++.-+- ...+.+.
T Consensus 106 ~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 106 AGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EELEALAKSSPVFAPGIEN 176 (238)
T ss_pred CCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHH
Confidence 669999999999998886 455558888888777654 555555544444433 3344443332 2457788
Q ss_pred HHHcCCcceecCcchHHHHHHHHHHHHHh
Q 009256 174 GWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (539)
Q Consensus 174 A~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (539)
+.++|+||+|+++.+-..-+.+++.-++.
T Consensus 177 ~~~~G~vd~vi~~~~~~~~~~~~~~~~~~ 205 (238)
T TIGR03134 177 FVKLGGVHALLDVADADAPAAQLAAVLAA 205 (238)
T ss_pred HHhCCCccEEeCCCCcccHHHHHHHHHHh
Confidence 99999999999866543233444444443
No 305
>PLN02306 hydroxypyruvate reductase
Probab=97.44 E-value=0.00025 Score=73.56 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=72.6
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|||||.|.+|..+|..+. ..|.+|..||+.+.. .+...+.... .....+... .......++ +.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~---~l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ---FLKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcc---ccccccccc--------ccccccCCHHHHH
Confidence 58999999999999999985 679999999987642 1111000000 000000000 011122355 667
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
+.||+|+.++|-..+...-+=++..+.++++++++..+-+-. -..+...+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999997776655555667788999999875544433 334545443
No 306
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.43 E-value=0.0011 Score=61.05 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=47.9
Q ss_pred eEEEEcCCCCcHHHH-HHHHHC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 310 KVAVIGGGLMGSGIA-TAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 310 kI~iIG~G~mG~~iA-~~l~~~-----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
||+|||+|..-.+.- ...... +-+++++|+|+++++....-.+.. .+....+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCCC--------eEEEEeCCHH
Confidence 799999999876643 223322 348999999999988664433222 2222111 346678888
Q ss_pred cCCCCcCEEEEcc
Q 009256 383 SEFKDVDMVIEAV 395 (539)
Q Consensus 383 ~~~~~aDlVi~av 395 (539)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 8899999999876
No 307
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.43 E-value=0.00032 Score=69.00 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=54.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||. |.||.+||..|.++|++|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 58999999 99999999999999999999932211 11 3468
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+||+||.+++....+... .+++++++++.+..
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvgin 232 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVGMN 232 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEecce
Confidence 899999999855544332 37899998876543
No 308
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.43 E-value=0.00057 Score=71.16 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|+|+|.|.+|..++..+...|.+|+++|+++.+++.+.. .|. ......+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence 48999999999999999999999999999999988766532 121 101111456789
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
|+||++...... +-......++++.+++...
T Consensus 259 DVVI~atG~~~~----i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNKDI----ITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCHHH----HHHHHHhcCCCCcEEEEeC
Confidence 999999863222 2223456788888776444
No 309
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.41 E-value=0.0004 Score=70.14 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCcceEEEEcC-CCCcHHHHHHHHHCC--CeEEEEeCC
Q 009256 306 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVN 340 (539)
Q Consensus 306 ~~~~kI~iIG~-G~mG~~iA~~l~~~G--~~V~~~d~~ 340 (539)
.+|+||+|||+ |.+|+.+|..++..+ .+++++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 45779999999 999999999998665 589999993
No 310
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.38 E-value=0.013 Score=57.51 Aligned_cols=139 Identities=15% Similarity=0.221 Sum_probs=81.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCc
Q 009256 25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (539)
Q Consensus 25 ~Nal~~~~~~~l~~~~~~~~~d----~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 100 (539)
.-+++...-+.+..+++.+.+| ..+-+|.|.-.| |+.+.|-.. . ...+.+.+.... .+... .|
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg~~----~-L~~~a~i~~~~~--~ls~~-vP 138 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEANA----G-LIAIAEIMRAIL--DARAA-VP 138 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhhHH----H-HHHHHHHHHHHH--HHhCC-CC
Confidence 3678888888999999888752 123456664333 233332110 0 001111121221 24444 99
Q ss_pred EEEEEcCc--cccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH--HHHHHHHHcCCCCCHHHHHH
Q 009256 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK 176 (539)
Q Consensus 101 ~iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~--~~a~~l~l~g~~~~a~eA~~ 176 (539)
+|+.+.|+ |+||+..++..||++|+++++++++.-.. ......|. --..+--|.-+.+.++....
T Consensus 139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~-----------VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~ 207 (274)
T TIGR03133 139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRALVWRTTGGKHRFL 207 (274)
T ss_pred EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHH-----------HHHHhcCCCccCHHHhcccccccchHhHhh
Confidence 99999999 89999999999999999999888763111 01111121 11112222223455556777
Q ss_pred cCCcceecCcc
Q 009256 177 LGLIDAVVTSE 187 (539)
Q Consensus 177 ~Glv~~vv~~~ 187 (539)
.|++|.++++|
T Consensus 208 sG~~D~~v~dd 218 (274)
T TIGR03133 208 SGDADVLVEDD 218 (274)
T ss_pred cccceEEeCCH
Confidence 99999999875
No 311
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.37 E-value=0.00026 Score=71.05 Aligned_cols=97 Identities=27% Similarity=0.325 Sum_probs=63.4
Q ss_pred EEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCE
Q 009256 313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (539)
Q Consensus 313 iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (539)
|||+|.+|.++|..++..+. ++.++|++++.++....++++..... ... -.++ ..+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~-~~~-----------~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL-PTP-----------KKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc-CCC-----------eEEe-cCCHHHHCCCCE
Confidence 69999999999999998886 89999999887665544443221100 000 1233 355689999999
Q ss_pred EEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 391 Vi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
||.+... +..+.+++..++.++. ++.+++..+
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs 113 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT 113 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 9987632 3334555666677775 445444333
No 312
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.37 E-value=0.00013 Score=81.82 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=44.9
Q ss_pred cchhhcchHHHHHHHHHHHHcC-C-CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 491 GFAVNRAFFPYSQSARLLVSLG-V-DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 491 g~v~nrl~~~~~~Ea~~l~~~G-~-~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
.-++||++.+++||+.+++++| + +++|||.++ .++|||. |||+++|..+
T Consensus 625 ~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~G 679 (714)
T TIGR02437 625 EEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIG 679 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhC
Confidence 3489999999999999999999 4 999999999 8999997 9999999753
No 313
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.37 E-value=0.00082 Score=64.19 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=70.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
..||.|||.|..|.+.|..++.+|. ++.++|.++++++...=.+++... --...++....|+...
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~-------------f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSA-------------FLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccc-------------cccCCceEecCccccc
Confidence 5799999999999999999999886 999999999877654322221110 0111456667788889
Q ss_pred CCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
+++++||..... +.++.+.++.++.++ .|+++++..+....
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVD 141 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVD 141 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchH
Confidence 999999988732 233344444455555 45665544443333
No 314
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.37 E-value=0.00026 Score=71.82 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=62.7
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (539)
||+|||+ |.+|..++..+...|+ +++++|++++. ++....++.+... .....+..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~--------------~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAF--------------PLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccc--------------hhcCceecc
Confidence 5899999 9999999999998654 59999997543 2211111110000 001123333
Q ss_pred -CCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 380 -LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 380 -~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
.+++++++||+||.+... +..+.+++..+|.++.+++++++..+...
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv 128 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA 128 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 336899999999987621 22334555666777765666665545333
No 315
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.33 E-value=0.0016 Score=63.42 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=89.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|+|||.|.-|.+-|.+|..+|++|++--|.... .+++. + +.+.+.+-.++++.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~-----------~-------------dGf~V~~v~ea~k~ 74 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAK-----------E-------------DGFKVYTVEEAAKR 74 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHH-----------h-------------cCCEeecHHHHhhc
Confidence 58999999999999999999999998876554333 33332 2 23443333388999
Q ss_pred cCEEEEcccCChhHHHHHHH-HHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCC----------CCCee
Q 009256 388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH----------VMPLL 456 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~-~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~----------~~~~v 456 (539)
+|+|+.-+|+.. -.++++ +|.+.++.+..+. -+.+..+.--.-..+....++-.-|-.|-+ -.|.+
T Consensus 75 ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~-FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~L 151 (338)
T COG0059 75 ADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALG-FAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPAL 151 (338)
T ss_pred CCEEEEeCchhh--HHHHHHHHhhhhhcCCceEE-eccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeE
Confidence 999999999544 457776 7999999998765 344444432111111111222222222211 11222
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCc
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKK 481 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~ 481 (539)
..+- ...+-.+.+.+..+.+.+|.
T Consensus 152 iAV~-qD~sG~a~~~Ala~AkgiGg 175 (338)
T COG0059 152 IAVH-QDASGKALDIALAYAKGIGG 175 (338)
T ss_pred EEEE-eCCCchHHHHHHHHHHhcCC
Confidence 2222 33456688889999999884
No 316
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.33 E-value=0.00059 Score=70.84 Aligned_cols=87 Identities=23% Similarity=0.198 Sum_probs=60.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ....+..+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~-----------~G-------------~~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM-----------DG-------------FRVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh-----------cC-------------CEeCCHHHHHhcC
Confidence 48999999999999999999999999999999876443311 12 1111111456789
Q ss_pred CEEEEcccCChhHHHHHHH-HHHHhCCCCeEEEecCC
Q 009256 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS 424 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~-~l~~~~~~~~ii~s~ts 424 (539)
|+||++... ..++. +....++++.+++..+.
T Consensus 252 DVVItaTG~-----~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 252 DIFITATGN-----KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred CEEEECCCC-----HHHHHHHHHhcCCCCcEEEEECC
Confidence 999998753 23333 35667889988875443
No 317
>PRK04148 hypothetical protein; Provisional
Probab=97.33 E-value=0.0026 Score=55.31 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=65.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|.+||+| -|..+|..|.+.|++|+.+|+|++.++.+.+.. ...+... + +..+.+--+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~----~~~v~dD-------------l-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG----LNAFVDD-------------L-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC----CeEEECc-------------C-CCCCHHHHhcC
Confidence 479999999 999999999999999999999999877764421 0000000 0 12222445899
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
|+|...-| +.-.+.-+-++.+.+..+.+|..-+
T Consensus 79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99998887 3334555667888888777765433
No 318
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.32 E-value=0.00037 Score=69.08 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=37.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+...+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~ 159 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAER 159 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 479999999999999999999999999999999887766544
No 319
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.31 E-value=0.00083 Score=70.18 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| .... +. +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~-~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVM-TMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEec-CHHHHHhC
Confidence 48999999999999999999999999999999876544311 11 1111 12 45678
Q ss_pred cCEEEEcccCChhHHHHHHH-HHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~-~l~~~~~~~~ii~s~ts 424 (539)
+|+||+++.. . .++. +....++++++++....
T Consensus 268 aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 268 GDIFVTATGN-K----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence 9999998742 1 2333 46667889988875443
No 320
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.31 E-value=0.00047 Score=63.50 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=58.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC-------
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD------- 381 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------- 381 (539)
||.|||+|.+|+.++..|++.|+ +++++|.+.-....+..++. ... +-|....+.....+..+....+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~--~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY--FLS--QIGEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc--cHh--hCCChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 58999999999999999999998 69999998622222211110 000 1121112222222222221111
Q ss_pred -----c-cCCCCcCEEEEcccCChhHHHHHHHHHHHh
Q 009256 382 -----Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 412 (539)
Q Consensus 382 -----~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~ 412 (539)
. +.++++|+||+| .++.+.+..+.......
T Consensus 77 ~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred cChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 1 346889999999 56788777777776655
No 321
>PRK10949 protease 4; Provisional
Probab=97.29 E-value=0.0022 Score=70.33 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcCcccc
Q 009256 32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALG 111 (539)
Q Consensus 32 ~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~G 111 (539)
.+.++.++++.+..|+.|++|||.-.+.. |..... . +...+.+ ..+....|||||. ...+.-
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~------------~-~eI~~ai-~~fk~sGKpVvA~-~~~~~s 157 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPS------------M-QYIGKAL-REFRDSGKPVYAV-GDSYSQ 157 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHH------------H-HHHHHHH-HHHHHhCCeEEEE-ecCccc
Confidence 45689999999999999999999864321 111110 0 1122334 4467788999985 444456
Q ss_pred chhHhhhccCEEEeeCCceEeC
Q 009256 112 GGLELAMGCHARIAAPKTQLGL 133 (539)
Q Consensus 112 gG~~lal~~D~~ia~~~a~f~~ 133 (539)
+++.||.+||-+++.+...+++
T Consensus 158 ~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 158 GQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred hhhhhhhhCCEEEECCCceEEE
Confidence 7999999999999999887654
No 322
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.27 E-value=0.0021 Score=67.72 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=50.9
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|.. +..+...|++. +-+|+++|+++++++....- .....+....+ -++..++|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l----~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA----VKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH----HHHHHHhhCCC--------eEEEEECCH
Confidence 48999999885 33445555543 35899999999988774322 22223322111 257778888
Q ss_pred -cCCCCcCEEEEcc
Q 009256 383 -SEFKDVDMVIEAV 395 (539)
Q Consensus 383 -~~~~~aDlVi~av 395 (539)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 8999999999775
No 323
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.26 E-value=0.021 Score=56.36 Aligned_cols=141 Identities=17% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 25 ~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.-++....-+.+..+++.+... .+-+|.++..| |+-++|-.. ....+.+.. ..+.+....-..|.|+.
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SG-----GARmQEg~~-----sL~qmak~s-aa~~~~~~~~~vP~Isv 213 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASG-----GARMQEGSL-----SLMQMAKIS-SALYDYQSNKKLFYISI 213 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCC-----Cccccccch-----hhhhhHHHH-HHHHHHHHcCCCCEEEE
Confidence 4789999999999999988765 35677776443 333322100 011121111 11212123567999999
Q ss_pred EcCccccchhHh-hhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC-----CCHHHHHHcC
Q 009256 105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS-----ITSEEGWKLG 178 (539)
Q Consensus 105 v~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~-----~~a~eA~~~G 178 (539)
+.|+|.||+... ++.||++|+.++|.+++.-.++ ... .+|+. =+|+-.++.|
T Consensus 214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV--------------------Ie~--t~ge~lpe~fq~ae~l~~~G 271 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV--------------------IEQ--TLNKTVPEGSQAAEYLFDKG 271 (296)
T ss_pred EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH--------------------HHH--hcCCcCCcccccHHHHHhCc
Confidence 999999999765 7779999998888877642210 000 11222 2577788999
Q ss_pred CcceecCcchHHHHHHHHHHH
Q 009256 179 LIDAVVTSEELLKVSRLWALD 199 (539)
Q Consensus 179 lv~~vv~~~~l~~~a~~~a~~ 199 (539)
+||.||+..++.+....+..-
T Consensus 272 ~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 272 LFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred CceEEEcHHHHHHHHHHHHHh
Confidence 999999999998877766543
No 324
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0042 Score=63.87 Aligned_cols=147 Identities=21% Similarity=0.256 Sum_probs=103.4
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-cCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
++.|..+.++. .+++...+.+.+.++.++++.. .++||. -+++. +.+...++.
T Consensus 25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG---------------------l~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGG---------------------LLDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc---------------------hHHHHHHHH
Confidence 34677777765 5999999999999999997763 344442 22211 112344666
Q ss_pred HHHHHhCCCcEEEEE---cCccccchhHhhhccCEEEeeCCceEeCCcccCCC--CCCcch--hhcc------cccc--C
Q 009256 91 VNLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV--IPGFGG--TQRL------PRLV--G 155 (539)
Q Consensus 91 ~~~i~~~~~p~iaav---~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl--~p~~g~--~~~l------~r~v--G 155 (539)
++|.+.+.||+..| .+.|..+|..++++||+..+++.+.+|-...-.+- .+.--. ...+ .+.= -
T Consensus 79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 78999999988888 44699999999999999999999998765443221 111011 1111 1111 2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
...|.+++.....++++||++.|++|-+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence 367788999999999999999999997763
No 325
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.21 E-value=0.0025 Score=67.01 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=66.7
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.||+|||+|.- ...+...|++. +-+|+++|+++++++....-.+ ...+....+ -.+..++|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCH
Confidence 38999999884 44555666543 3589999999999877433222 222221111 247778888
Q ss_pred -cCCCCcCEEEEccc----------------------------------CChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 383 -SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 383 -~~~~~aDlVi~avp----------------------------------e~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+++++||+||.++- .+..+..++.+++.+++ |+++++.-|
T Consensus 69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~T 143 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFT 143 (425)
T ss_pred HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecC
Confidence 89999999997751 13446667778888887 455554333
No 326
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.17 E-value=0.0012 Score=59.82 Aligned_cols=70 Identities=23% Similarity=0.205 Sum_probs=50.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+ |..|+.|..-..++||+|+.+-||++++..... + ..++....+. +...+++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~-~-----~i~q~Difd~------------~~~a~~l~g 62 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQG-V-----TILQKDIFDL------------TSLASDLAG 62 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccccc-c-----eeecccccCh------------hhhHhhhcC
Confidence 48999996 999999999999999999999999988754210 0 0122222221 111266889
Q ss_pred cCEEEEccc
Q 009256 388 VDMVIEAVI 396 (539)
Q Consensus 388 aDlVi~avp 396 (539)
.|.||.+..
T Consensus 63 ~DaVIsA~~ 71 (211)
T COG2910 63 HDAVISAFG 71 (211)
T ss_pred CceEEEecc
Confidence 999998874
No 327
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.16 E-value=0.0012 Score=66.51 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=65.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+++.. .+. .+. ..+. +++
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHHh
Confidence 479999999999999999975 56 4799999999998887665421 010 111 2334 578
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
.++|+||.|.|....+ +.. .+++++.|....+..+
T Consensus 187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAFTP 221 (304)
T ss_pred hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCCCC
Confidence 9999999999866543 222 3578887776555433
No 328
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0026 Score=61.19 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=59.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c-CCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~ 386 (539)
++|.|||+|.+|.++|..|.+.||+|+++|++++.+++..... +...+-.+.-+.. +-+ + -+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~---~~~~~v~gd~t~~------------~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE---LDTHVVIGDATDE------------DVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh---cceEEEEecCCCH------------HHHHhcCCC
Confidence 4799999999999999999999999999999999877743210 0000000100000 001 2 268
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHh-CCCCeEEE
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILA 420 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~-~~~~~ii~ 420 (539)
++|.++-+..+|.. ..++..+... +....+++
T Consensus 66 ~aD~vva~t~~d~~--N~i~~~la~~~~gv~~via 98 (225)
T COG0569 66 DADAVVAATGNDEV--NSVLALLALKEFGVPRVIA 98 (225)
T ss_pred cCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEE
Confidence 99999998876553 3444444322 44444554
No 329
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.15 E-value=0.00073 Score=67.38 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=52.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|||+|-+|.+++..|+..|. +|+++||+.++++.+.+.+..... . ..+....+. +.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~------~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFP------A----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCC------C----------eEEEeccchHhhhC
Confidence 589999999999999999999998 899999999988877654421110 0 011111222 3567
Q ss_pred CcCEEEEcccC
Q 009256 387 DVDMVIEAVIE 397 (539)
Q Consensus 387 ~aDlVi~avpe 397 (539)
++|+||.|+|-
T Consensus 192 ~aDiVInaTp~ 202 (284)
T PRK12549 192 AADGLVHATPT 202 (284)
T ss_pred CCCEEEECCcC
Confidence 88999998873
No 330
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.15 E-value=0.0013 Score=66.03 Aligned_cols=96 Identities=13% Similarity=0.056 Sum_probs=68.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
-++|+|+|+|.+|..+|+.|...| .++.| .|++...+...+.. ....+..+.+.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~------------------------~~~~d~~~~~~ 216 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYY------------------------AEFVDIEELLA 216 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHhc------------------------ccccCHHHHHh
Confidence 468999999999999999999999 55555 56554444332210 00112226688
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
.+|+|+.+.|-+.+...-+=+++...++++.+|+...-+--+
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ii 258 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAII 258 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccc
Confidence 999999999988887666667899999999988865545333
No 331
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.15 E-value=0.00098 Score=70.07 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=61.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+.. .| ... .++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~~-~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQV-VTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------cee-ccHHHHHhc
Confidence 48999999999999999999999999999999876433211 11 111 122 55789
Q ss_pred cCEEEEcccCChhHHHHHH-HHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~-~~l~~~~~~~~ii~s~ts~ 425 (539)
+|+||.+... +.++ .+..+.++++++++..+..
T Consensus 310 ADIVI~atGt-----~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 310 ADIFVTATGN-----KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCEEEECCCc-----ccccCHHHHhccCCCcEEEEcCCC
Confidence 9999998642 2333 3456678999988754443
No 332
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.14 E-value=0.002 Score=67.69 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=49.4
Q ss_pred ceEEEEcCCCCcH-HHHHHHHHC-----CCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 309 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 309 ~kI~iIG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
+||+|||+|..-+ .+...|++. +-+|+++|++ +++++....-.+. ..+....+ -.+..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence 4899999998633 445555552 3589999999 7887664332222 22221111 24667788
Q ss_pred c-cCCCCcCEEEEcc
Q 009256 382 Y-SEFKDVDMVIEAV 395 (539)
Q Consensus 382 ~-~~~~~aDlVi~av 395 (539)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 8 8899999999876
No 333
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.09 E-value=0.0015 Score=66.51 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.+|...+..++. .+. +|.+|||++++.+.+.+.+...+ + -.+...++. +.+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 479999999999998887754 454 89999999999887766543211 1 012223444 568
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.++|+||.|.|.... ++. ..+++++.|....+.
T Consensus 191 ~~aDiVi~aT~s~~p----~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 EEADIIVTVTNAKTP----VFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred hcCCEEEEccCCCCc----chH---HhcCCCcEEEecCCC
Confidence 899999999986532 232 456889888766554
No 334
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.08 E-value=0.0015 Score=66.65 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|.+|...+..+.. .+. +|++|+|++++.+.+.+++...+ + -.+...++. +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-----------~~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-----------IDVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence 479999999999999999974 664 79999999999888766542111 1 012223444 568
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
.+||+|+.|+|....+.. .+.+++++.+....+..
T Consensus 193 ~~aDiVvtaT~s~~p~i~------~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 193 SGADIIVTTTPSETPILH------AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred ccCCEEEEecCCCCcEec------HHHcCCCcEEEeeCCCC
Confidence 899999999986543321 13467888776544443
No 335
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0011 Score=68.22 Aligned_cols=79 Identities=25% Similarity=0.218 Sum_probs=55.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
|++|.|||+|.+|+.+|..|+++| ++|++.||+.++++++.+.... -++.-.++.... ..+ +.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~----------~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADV----------DALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccCh----------HHHHHHH
Confidence 468999999999999999999999 8999999999998887553211 001001111111 011 457
Q ss_pred CCcCEEEEcccCChh
Q 009256 386 KDVDMVIEAVIESVP 400 (539)
Q Consensus 386 ~~aDlVi~avpe~~~ 400 (539)
++.|+||.++|....
T Consensus 67 ~~~d~VIn~~p~~~~ 81 (389)
T COG1748 67 KDFDLVINAAPPFVD 81 (389)
T ss_pred hcCCEEEEeCCchhh
Confidence 888999999985443
No 336
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.05 E-value=0.00068 Score=68.88 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=62.2
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCC-------CeEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 009256 310 KVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (539)
||+|+|+ |.+|+.++..|...+ .+|+++|+++.. ++...-++.+. .. .....+...
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~------------~~--~~~~~~~~~ 69 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC------------AF--PLLKSVVAT 69 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhc------------cc--cccCCceec
Confidence 7999998 999999999998854 589999997631 22110000000 00 001223334
Q ss_pred CCc-cCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 380 LDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 380 ~~~-~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
.++ +++++||+||.+... +..+.+++...+.++.+++.+++..+.
T Consensus 70 ~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 70 TDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 554 889999999987621 222335566677888766776654444
No 337
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.05 E-value=0.0012 Score=69.66 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..|...| .+|+++++++++.+...+.+. ...++ + .+. +.+.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g--------~~~i~------------~-~~l~~~l~ 239 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELG--------GEAVK------------F-EDLEEYLA 239 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC--------CeEee------------H-HHHHHHHh
Confidence 48999999999999999999999 789999999987665433210 00011 1 122 5567
Q ss_pred CcCEEEEcccCChh-HHHHHHHHHHHhCCCCeEEEecC
Q 009256 387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe~~~-~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
++|+||.|++.... +..+.++.....-+...++++..
T Consensus 240 ~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 240 EADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred hCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 89999999864433 33344443322111234555544
No 338
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.03 E-value=0.0022 Score=58.49 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=55.1
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|.| |..++..|.+.|.+|++++++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 48999999997 88899999999999999998853221 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
||+||.+++..--+..+ .++++.++++....-.+
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv 121 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence 99999999753322222 34567777776654443
No 339
>PLN02494 adenosylhomocysteinase
Probab=97.03 E-value=0.0015 Score=68.65 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| .... +. +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G-------------~~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EG-------------YQVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cC-------------Ceec-cHHHHHhh
Confidence 58999999999999999999999999999999876443311 11 1111 12 45678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+|+||++..... .+..+..+.++++.+++..+.
T Consensus 310 ADVVI~tTGt~~----vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 310 ADIFVTTTGNKD----IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCEEEECCCCcc----chHHHHHhcCCCCCEEEEcCC
Confidence 999998765322 223455667899988875544
No 340
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.02 E-value=0.01 Score=56.34 Aligned_cols=143 Identities=19% Similarity=0.220 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceE--EEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.++.++...+...|-.++.++..+- +-|-+.|+...+|-=+.. ......++ +.|...+-||...
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv 113 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTI 113 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEE
Confidence 3445588888888877765443222 333444444444410000 01123555 6788888999999
Q ss_pred EcCccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHH
Q 009256 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM 162 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l 162 (539)
+-|.|.+.+.-|++++|- |++.++++|-+....-|. .|-+. .+...-| ...-.++
T Consensus 114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~---~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d 190 (222)
T PRK12552 114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA---RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD 190 (222)
T ss_pred EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999995 899999998876654332 12111 1111222 1333344
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
+-....++|+||+++||||+|+..
T Consensus 191 ~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 191 TDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred hcCCCcCCHHHHHHcCCCcEEecc
Confidence 555678899999999999999854
No 341
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.01 E-value=0.0011 Score=65.87 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=52.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
+++.|+|+|.+|.+++..|...| .+|++++|+.++++.+.+.+... . .+....+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~-------~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL-------G------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-------c------------ceeecccchhccc
Confidence 47999999999999999999999 69999999998887765543210 0 01111122 5568
Q ss_pred CcCEEEEcccCCh
Q 009256 387 DVDMVIEAVIESV 399 (539)
Q Consensus 387 ~aDlVi~avpe~~ 399 (539)
++|+||.++|...
T Consensus 185 ~~DivInaTp~g~ 197 (278)
T PRK00258 185 DFDLIINATSAGM 197 (278)
T ss_pred cCCEEEECCcCCC
Confidence 8999999998544
No 342
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.98 E-value=0.0021 Score=64.60 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|..|...+..+..- .+ +|.+|+|++++.+.+.+++...+ + -.+...++. +++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav 180 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL 180 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 4799999999999998887753 33 89999999999998876653211 1 123344555 778
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+||+|+.+.+....+.. .+.++|++.|....+.
T Consensus 181 ~~aDIV~taT~s~~P~~~------~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 181 RDADTITSITNSDTPIFN------RKYLGDEYHVNLAGSN 214 (301)
T ss_pred hcCCEEEEecCCCCcEec------HHHcCCCceEEecCCC
Confidence 999999999876543321 2356788777655544
No 343
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.97 E-value=0.0012 Score=61.93 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=37.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|+|+ |.+|..++..|++.|++|++++|++++++...+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~ 71 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS 71 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 47999996 9999999999999999999999998887766544
No 344
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.96 E-value=0.0025 Score=54.91 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=59.8
Q ss_pred eEEEEcC-CCCcHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccCC
Q 009256 310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF 385 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 385 (539)
||+|||+ |.+|..++..+... ++++..+ +++.+..+..... .+.+... ....+. .+.+ .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~----------~~~~~~~------~~~~~~~~~~~-~ 63 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEA----------GPHLKGE------VVLELEPEDFE-E 63 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHH----------Ccccccc------cccccccCChh-h
Confidence 5899995 89999999999884 8888766 5543322222110 0000000 000011 1112 2
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
.++|+||.|+|++... .+...+...+.+++++++.++.+...
T Consensus 64 ~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~~ 105 (122)
T smart00859 64 LAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRMD 105 (122)
T ss_pred cCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccCC
Confidence 4899999999977543 33334445568899999888876643
No 345
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.95 E-value=0.002 Score=68.17 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=60.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..+...|. +|+++++++++.+.+.+.+. ....+ ..+. +.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g--------~~~~~-------------~~~~~~~l~ 241 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG--------GEAIP-------------LDELPEALA 241 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC--------CcEee-------------HHHHHHHhc
Confidence 489999999999999999999997 89999999988765533210 00000 1122 4567
Q ss_pred CcCEEEEcccCChh-HHHHHHHHHHHhC-CCCeEEEecC
Q 009256 387 DVDMVIEAVIESVP-LKQKIFSELEKAC-PPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe~~~-~~~~~~~~l~~~~-~~~~ii~s~t 423 (539)
++|+||.|++.... +....++.....- ..+.++++.+
T Consensus 242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeC
Confidence 89999999975443 3334444432111 2345666554
No 346
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.92 E-value=0.033 Score=55.31 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCc
Q 009256 25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (539)
Q Consensus 25 ~Nal~~~~~~~l~~~~~~~~~d~----~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 100 (539)
.-+++......+..+++.+.++. .+-+|.|.-.| |+.+.|-.. . ...+.+.+..+. .+... +|
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~~----~-L~~~a~i~~~~~--~ls~~-VP 147 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEANA----G-LAAIAEIMRAIV--DLRAA-VP 147 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchHH----H-HHHHHHHHHHHH--HHhCC-CC
Confidence 47888889999999999887654 25566664333 233322110 0 001111121222 24444 99
Q ss_pred EEEEEcCc--cccchhHhhhccCEEEeeCCceEeC
Q 009256 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL 133 (539)
Q Consensus 101 ~iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~ 133 (539)
+|+.+.|. |+||+...+.+||++|+++++++++
T Consensus 148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 99999999 9999999999999999999988876
No 347
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.91 E-value=0.0019 Score=61.46 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (539)
.+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 379999999999999999999998 59999988
No 348
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.86 E-value=0.004 Score=62.85 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=68.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.+.++|||+|.++......+..- .-+|.+|+|+++..++...+..+.+. ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-----------------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-----------------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-----------------ccceeccCHHHH
Confidence 45799999999999999888763 34999999999999988765432211 113445555 78
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+++||+|+.++|.+..+.. .+.+++++.|....+.
T Consensus 193 v~~aDiIvt~T~s~~Pil~------~~~l~~G~hI~aiGad 227 (330)
T COG2423 193 VEGADIVVTATPSTEPVLK------AEWLKPGTHINAIGAD 227 (330)
T ss_pred hhcCCEEEEecCCCCCeec------HhhcCCCcEEEecCCC
Confidence 9999999999987664321 2457799888765553
No 349
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.85 E-value=0.0032 Score=64.32 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.+|...+..+.. .+ .+|++|+|++++.+.+.+++++.+ + -.+....+. +++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-----------~~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-----------IPVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-----------ceEEEeCCHHHHH
Confidence 479999999999998888875 45 589999999999888766543211 1 012234455 668
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
.++|+||.+.|....+... ..+++++.+....+
T Consensus 196 ~~aDiVi~aT~s~~p~i~~------~~l~~g~~v~~vg~ 228 (330)
T PRK08291 196 AGADIIVTTTPSEEPILKA------EWLHPGLHVTAMGS 228 (330)
T ss_pred ccCCEEEEeeCCCCcEecH------HHcCCCceEEeeCC
Confidence 8999999999865433211 23566665544333
No 350
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.84 E-value=0.0085 Score=51.21 Aligned_cols=76 Identities=24% Similarity=0.199 Sum_probs=52.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 310 KVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
||+|||+|.+|......+.+. +.+|+ ++|+++++.+...+. -.+...++. +.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence 799999999999999888876 45654 789999887776332 122344555 334
Q ss_pred C--CcCEEEEcccCChhHHHHHHHHHH
Q 009256 386 K--DVDMVIEAVIESVPLKQKIFSELE 410 (539)
Q Consensus 386 ~--~aDlVi~avpe~~~~~~~~~~~l~ 410 (539)
. +.|+|++++|.... ........
T Consensus 59 ~~~~~D~V~I~tp~~~h--~~~~~~~l 83 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSSH--AEIAKKAL 83 (120)
T ss_dssp HHTTESEEEEESSGGGH--HHHHHHHH
T ss_pred HhhcCCEEEEecCCcch--HHHHHHHH
Confidence 3 78999999986553 34444433
No 351
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.83 E-value=0.0062 Score=56.93 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=56.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
+|++||+|.+|..+...+... .+ .|.+||++.+++..+.+.. . ....+++ +.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~-~~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------G-RRCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------C-CCccccHHHHh
Confidence 799999999999999877643 24 6789999999877664321 1 1122555 445
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
.+.|+++||.. .+..++...++.+. .-+++|+|.
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~SV 92 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMSV 92 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEec
Confidence 89999999986 44444444443322 235566543
No 352
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.82 E-value=0.035 Score=59.88 Aligned_cols=170 Identities=12% Similarity=0.104 Sum_probs=106.1
Q ss_pred CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 13 ~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+.-.-|.=|+|. .-++++.-.+...+.++.+.+. .+-+|.|.-.++ |..|.+-+. ........+++
T Consensus 314 G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~ 381 (512)
T TIGR01117 314 GQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL 381 (512)
T ss_pred CEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH
Confidence 333334446664 3679999999999999988764 566666643332 655543221 11112233455
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhh----ccCEEEeeCCceEeCCcccCCCCCCcchhhcccc-ccC----HHHHHH
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVG----LSKAIE 161 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~vG----~~~a~~ 161 (539)
.++.+..+|.|+.|-|.++|||..-.. .+|+++|.+++.++. +++-++...+-+ .+- ...+.+
T Consensus 382 -~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~ 453 (512)
T TIGR01117 382 -YAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRK 453 (512)
T ss_pred -HHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHH
Confidence 567889999999999999888654333 289999998887764 332333222211 110 111111
Q ss_pred HH---HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHh
Q 009256 162 MM---LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (539)
Q Consensus 162 l~---l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (539)
-. ..-+..++..+.+.|+||.|+++.+.......+.+.+..
T Consensus 454 ~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 454 QKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES 497 (512)
T ss_pred HHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence 11 122345788999999999999999998877777765543
No 353
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.80 E-value=0.013 Score=59.01 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=45.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEE-EeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~-~d~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
-+|+|||.|.||...+..+.+. +++++. +|+++ +.+.. . . + ...+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~---~----------~------------~-v~~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT---E----------T------------P-VYAVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh---c----------C------------C-ccccCCHHHh
Confidence 4899999999999999988765 788874 69985 32211 0 0 1 1112223 44
Q ss_pred CCCcCEEEEcccCChh
Q 009256 385 FKDVDMVIEAVIESVP 400 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~ 400 (539)
+.++|+|+.|.|....
T Consensus 58 l~~iDVViIctPs~th 73 (324)
T TIGR01921 58 LDDVDVLILCMGSATD 73 (324)
T ss_pred ccCCCEEEEcCCCccC
Confidence 5789999999987665
No 354
>PLN00203 glutamyl-tRNA reductase
Probab=96.79 E-value=0.0015 Score=70.16 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=57.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..|...|. +|++++|++++.+.+.+.+. +. . -.....++. +.+.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g~-~--------i~~~~~~dl~~al~ 328 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------DV-E--------IIYKPLDEMLACAA 328 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------CC-c--------eEeecHhhHHHHHh
Confidence 589999999999999999999997 79999999988877644320 00 0 001111222 5678
Q ss_pred CcCEEEEcccCCh-hHHHHHHHHHH
Q 009256 387 DVDMVIEAVIESV-PLKQKIFSELE 410 (539)
Q Consensus 387 ~aDlVi~avpe~~-~~~~~~~~~l~ 410 (539)
++|+||.|++... -+..+.++.+.
T Consensus 329 ~aDVVIsAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 329 EADVVFTSTSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCEEEEccCCCCCeeCHHHHHHhh
Confidence 9999999986433 34445555543
No 355
>PRK06046 alanine dehydrogenase; Validated
Probab=96.78 E-value=0.0038 Score=63.61 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.+|...+..+... +. .|.+||+++++.+.+.+++...+ + -.+...++. +.+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~l 192 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEAC 192 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence 4899999999999999988743 43 78899999998888766542110 1 012334455 445
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
. +|+|+.|.|....+.. .+.+++++.|.+..+..+
T Consensus 193 ~-aDiVv~aTps~~P~~~------~~~l~~g~hV~~iGs~~p 227 (326)
T PRK06046 193 D-CDILVTTTPSRKPVVK------AEWIKEGTHINAIGADAP 227 (326)
T ss_pred h-CCEEEEecCCCCcEec------HHHcCCCCEEEecCCCCC
Confidence 5 9999999986543321 235688988776655433
No 356
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.019 Score=57.14 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=88.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH-CCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC--
Q 009256 310 KVAVIGGGLMGSGIATAHIL-NNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-- 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~-~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 385 (539)
+||+||+|.||+.|+....+ .|.+|+.+ |++.+...++.++....-...++....+.-..+-..+.+..++|.+.+
T Consensus 19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~~ 98 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELIIA 98 (438)
T ss_pred EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhhc
Confidence 79999999999999988875 69887755 888887777655321111111222212222222233556666666433
Q ss_pred -CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC-CCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCC
Q 009256 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (539)
Q Consensus 386 -~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts-~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~ 463 (539)
...|+||++..-...--+..+..| .....++..|.- ...+..+..... +-.|.- ...+..
T Consensus 99 ~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~A---d~~Gvi------------yS~~~G 160 (438)
T COG4091 99 NDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQA---DAAGVI------------YSGGAG 160 (438)
T ss_pred CCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHH---hhcCeE------------EeccCC
Confidence 456888887642222222333333 334445544432 122222211111 111322 223334
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEc
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
..|..+-.+.+|.+++|..++.++
T Consensus 161 DeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 161 DEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred CCcHHHHHHHHHHHhcCCeEEecc
Confidence 467777888899999999999985
No 357
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.78 E-value=0.0026 Score=68.17 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=52.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++++|+|+|.+|.+++..|.+.|++|+++|+++++.+...+.+. ....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~--------~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ--------GKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------cceec-------------hhHhcccCCC
Confidence 47999999999999999999999999999999887766533210 00000 1122336789
Q ss_pred CEEEEcccCChh
Q 009256 389 DMVIEAVIESVP 400 (539)
Q Consensus 389 DlVi~avpe~~~ 400 (539)
|+||.|+|....
T Consensus 392 DiVInatP~g~~ 403 (477)
T PRK09310 392 DIIINCLPPSVT 403 (477)
T ss_pred CEEEEcCCCCCc
Confidence 999999997653
No 358
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.77 E-value=0.0044 Score=62.69 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|.++...+..+..- --+|.+|+|++++.+++.+..++ .+ -.+...++. +++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEVA 190 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHHh
Confidence 4899999999999999887653 24899999999998887654321 11 123334555 778
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
++||+|+.+.+....+.+ .+.+++++.|....+..+
T Consensus 191 ~~ADIV~taT~s~~P~~~------~~~l~~G~hi~~iGs~~p 226 (315)
T PRK06823 191 HAANLIVTTTPSREPLLQ------AEDIQPGTHITAVGADSP 226 (315)
T ss_pred cCCCEEEEecCCCCceeC------HHHcCCCcEEEecCCCCc
Confidence 999999999875543321 135678988776655433
No 359
>PRK05086 malate dehydrogenase; Provisional
Probab=96.76 E-value=0.0043 Score=62.75 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=58.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHH---CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc--cCC-
Q 009256 309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD- 381 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~- 381 (539)
+||+|||+ |.+|..++..+.. .+++++++|+++.. +...-.+. ..+. ...+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~alDl~-------~~~~---------~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGVAVDLS-------HIPT---------AVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cceehhhh-------cCCC---------CceEEEeCCCCH
Confidence 48999999 9999999998855 35699999998542 11000010 0000 011221 345
Q ss_pred ccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 382 ~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
++++++||+||.|... +....+.+.+.+.++. ++.+++..+.
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsN 119 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITN 119 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 3789999999998742 1124445556677664 4555554343
No 360
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.74 E-value=0.012 Score=55.50 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|.+|...+..|.+.|.+|++++++.. .+... .+.+.+.. ..-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l-----------~~~~~i~~---------~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKL-----------VEEGKIRW---------KQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHH-----------HhCCCEEE---------EecCCChhhcCC
Confidence 5899999999999999999999999999986532 12221 12121110 000111245889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC--CCCCeeeeecCCCCc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~--~~~~~vei~~~~~t~ 465 (539)
+|+||.++. +.++...+.. .+..+. ++.+....+. ..|+.|. ..+++..-+.+.+.+
T Consensus 71 adlViaaT~-d~elN~~i~~----~a~~~~-lvn~~d~~~~---------------~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKE----DLPENA-LFNVITDAES---------------GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHH----HHHhCC-cEEECCCCcc---------------CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999988764 5555544433 233333 3322211111 1122222 234455556666678
Q ss_pred HHHHHHHHHHHHH
Q 009256 466 AQVILDLMTVGKI 478 (539)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (539)
|.....++.-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8777777776665
No 361
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.74 E-value=0.0022 Score=59.21 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=33.1
Q ss_pred EEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHH
Q 009256 311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (539)
Q Consensus 311 I~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 346 (539)
|.|+|+ |.+|..++..|++.|++|+++.|++++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689996 999999999999999999999999987665
No 362
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.71 E-value=0.0024 Score=66.21 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
.+|.|||+|.+|...+..+...|.+|+++|+++++++.+...... .+.....+ ..++ +.+++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~-------------~~~l~~~l~~ 230 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSN-------------AYEIEDAVKR 230 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCC-------------HHHHHHHHcc
Confidence 479999999999999999999999999999999876655332100 00000000 0112 45678
Q ss_pred cCEEEEcccC--ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe--~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+|+||.+++- .... .-+-++....++++.+|++.+
T Consensus 231 aDvVI~a~~~~g~~~p-~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 231 ADLLIGAVLIPGAKAP-KLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCEEEEccccCCCCCC-cCcCHHHHhcCCCCCEEEEEe
Confidence 9999999732 1111 011233344567887776533
No 363
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.70 E-value=0.0079 Score=52.06 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=58.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHH-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|+|+ |.||+.++..+.+ .|+++. .+|++++.... +.+ ......+. ..+..++++ +.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~----g~~~~~~~----------~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDV----GELAGIGP----------LGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBC----HHHCTSST-----------SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chh----hhhhCcCC----------cccccchhHHHh
Confidence 37999999 9999999999998 688855 56777621110 000 00000000 224445666 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i 431 (539)
+..+|+||+.. .++.....++...+ .+..+++.|++....++
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQI 106 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHH
Confidence 77799999887 34444444444443 36667778888876544
No 364
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.68 E-value=0.0032 Score=63.74 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=56.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|..+..-+..+.. .+. +|.+|+|++++.+.+.++++. .+ -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence 479999999999999888765 444 899999999998888765432 01 124445566 789
Q ss_pred CCcCEEEEcccCCh--hHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~--~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++||+|+.|.|... .+.. .+.+++++.|....+.
T Consensus 191 ~~aDii~taT~s~~~~P~~~------~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPVFD------AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEESB-------GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcccc------HHHcCCCcEEEEecCC
Confidence 99999999998655 3311 2357889888766554
No 365
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.67 E-value=0.052 Score=58.56 Aligned_cols=146 Identities=21% Similarity=0.192 Sum_probs=93.6
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCC--CchhhhhhcCCCcccccchHHHHHHH
Q 009256 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVV 91 (539)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (539)
..|..+.+. .-+++......+..+++.+..+. +-+|.|.- |.|+ ++++-... ...+...+.. +
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~i~~~-~- 125 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVES-----LMGMGRIFRA-I- 125 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHHHHHH-H-
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhhh-----hhhhHHHHHH-H-
Confidence 334444553 47899999999999999888764 45565543 3344 44432211 1111222222 2
Q ss_pred HHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 92 ~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
..+.. ..|+|+++.|+|+|||..++..||++|+.++ +.+++. |+.. .+ ..+|+.++
T Consensus 126 ~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~v-v~-~~~Ge~~~ 182 (493)
T PF01039_consen 126 ARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRV-VE-SATGEEVD 182 (493)
T ss_dssp HHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHH-HH-HHHSSCTS
T ss_pred HHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec--------------------cccc-cc-cccCcccc
Confidence 23556 9999999999999999999999999999987 777643 1111 11 24578888
Q ss_pred HHHH-------HHcCCcceecCcch-HHHHHHHHH
Q 009256 171 SEEG-------WKLGLIDAVVTSEE-LLKVSRLWA 197 (539)
Q Consensus 171 a~eA-------~~~Glv~~vv~~~~-l~~~a~~~a 197 (539)
.++. ..-|.+|.++++++ ..+.++++.
T Consensus 183 ~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~l 217 (493)
T PF01039_consen 183 SEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLL 217 (493)
T ss_dssp HHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHH
T ss_pred chhhhhhhhhcccCCCceEEEechHHHHHHHHHhh
Confidence 8764 46799999997763 334444443
No 366
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.61 E-value=0.0083 Score=67.33 Aligned_cols=95 Identities=8% Similarity=0.066 Sum_probs=74.8
Q ss_pred EEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccCC-CCcEEEeccCCCCC------------CCCe
Q 009256 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL 455 (539)
Q Consensus 391 Vi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~-~~r~vg~h~~~p~~------------~~~~ 455 (539)
||.|+| +.....+++++.++++++++|++.+|... +..+...+.. ..+|+|.||+..+. .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 688998 77788999999999999999987776543 3444444443 35799999976553 3456
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.+++.+.++++.+++++++++.+|..++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 67889999999999999999999999998884
No 367
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.58 E-value=0.0083 Score=58.27 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=47.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC---CeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN---IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G---~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.||+|||.|.||..++..+.+.+ +++ .++++++++.+.... .....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 48999999999999999987542 444 457787766554321 1223444533
Q ss_pred --CCCcCEEEEcccCChhHHHHHHHHH
Q 009256 385 --FKDVDMVIEAVIESVPLKQKIFSEL 409 (539)
Q Consensus 385 --~~~aDlVi~avpe~~~~~~~~~~~l 409 (539)
....|+|+||.. .+..++....+
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~i 82 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGC 82 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHH
Confidence 367899999886 44444444433
No 368
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.58 E-value=0.0055 Score=60.53 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=54.4
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||.|. +|.++|..|.+.|.+|+++++....++ +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 5899999988 999999999999999999987532111 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++..- ++.. +.+++++++++..+.
T Consensus 202 ADIVIsAvg~p~-----~i~~--~~vk~gavVIDvGi~ 232 (286)
T PRK14175 202 ADVIVSAVGKPG-----LVTK--DVVKEGAVIIDVGNT 232 (286)
T ss_pred CCEEEECCCCCc-----ccCH--HHcCCCcEEEEcCCC
Confidence 999999997432 2221 356888888875543
No 369
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.57 E-value=0.0024 Score=54.99 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=59.0
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCC-Ce-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-CccCC
Q 009256 310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF 385 (539)
Q Consensus 310 kI~iIG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~ 385 (539)
||+||| .|.+|..+...|.++- ++ +.++.++.+.-........ ...+ ...+.+.+ +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~------~~~~----------~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFP------HPKG----------FEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTG------GGTT----------TEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhcc------cccc----------ccceeEeecchhHh
Confidence 799999 8999999999999853 35 4455665522222211000 0000 01233332 33567
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
.++|+||.|+|. ....++...+ ++.++.|+++++.....
T Consensus 65 ~~~Dvvf~a~~~--~~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALPH--GASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SCH--HHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCch--hHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 999999999983 3344554444 45778888888876554
No 370
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.53 E-value=0.0055 Score=60.24 Aligned_cols=94 Identities=18% Similarity=0.115 Sum_probs=57.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|+|+ |.||..++..+.+. +++|+ ++|++++..... .. ..+...+++ +.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 48999998 99999999988764 67766 478887643321 00 112234455 44
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i 431 (539)
+.++|+||++.|.+. ..+..... +..+.-++..+++....+.
T Consensus 58 l~~~DvVid~t~p~~--~~~~~~~a---l~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 58 LADADVLIDFTTPEA--TLENLEFA---LEHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred ccCCCEEEECCCHHH--HHHHHHHH---HHcCCCEEEECCCCCHHHH
Confidence 568999999887433 23333332 2334433344666665543
No 371
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.50 E-value=0.007 Score=60.35 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=37.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|||+|-+|.+++..|+..|. +|++++|++++.+.+.++
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~ 168 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL 168 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence 479999999999999999999997 799999999988877554
No 372
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.47 E-value=0.004 Score=64.38 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=52.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|||+|-||...|.+|..+| ..|++.+|+.++++.+.+.+. +.....+++ +.+.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~---------------------~~~~~l~el~~~l~ 237 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG---------------------AEAVALEELLEALA 237 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC---------------------CeeecHHHHHHhhh
Confidence 47999999999999999999999 589999999999888765432 011112222 5678
Q ss_pred CcCEEEEcccC
Q 009256 387 DVDMVIEAVIE 397 (539)
Q Consensus 387 ~aDlVi~avpe 397 (539)
++|+||.++..
T Consensus 238 ~~DvVissTsa 248 (414)
T COG0373 238 EADVVISSTSA 248 (414)
T ss_pred hCCEEEEecCC
Confidence 99999988643
No 373
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.024 Score=58.91 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=50.9
Q ss_pred ceEEEEcCCCCcHHHH-HHHHH-----CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLMGSGIA-TAHIL-----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA-~~l~~-----~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.||+|||+|..+.+-- ..+.. .+.++.++|+++++.+.. ......+++....+ -++..++|.
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd~ 71 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTDR 71 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecCH
Confidence 4899999999876643 22222 256999999999987733 22233334433222 346778888
Q ss_pred -cCCCCcCEEEEcc
Q 009256 383 -SEFKDVDMVIEAV 395 (539)
Q Consensus 383 -~~~~~aDlVi~av 395 (539)
+++++||+|+.++
T Consensus 72 ~eAl~gAdfVi~~~ 85 (442)
T COG1486 72 REALEGADFVITQI 85 (442)
T ss_pred HHHhcCCCEEEEEE
Confidence 8999999999876
No 374
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.44 E-value=0.0044 Score=64.97 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=52.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|||+|-||..++..|...|. ++++++|++++.+.+.+.+.. + .....+++ +.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~--------~------------~~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN--------A------------SAHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC--------C------------eEecHHHHHHHhc
Confidence 479999999999999999999995 799999999887766443210 0 01111222 5678
Q ss_pred CcCEEEEcccCCh
Q 009256 387 DVDMVIEAVIESV 399 (539)
Q Consensus 387 ~aDlVi~avpe~~ 399 (539)
++|+||.|++.+.
T Consensus 242 ~aDiVI~aT~a~~ 254 (414)
T PRK13940 242 KADIIIAAVNVLE 254 (414)
T ss_pred cCCEEEECcCCCC
Confidence 8999999986544
No 375
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.42 E-value=0.012 Score=60.16 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=64.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|..+...+..+.. .. .+|++|+|++++.+.+.++++. .+ -.+...++. +++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av 191 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEAV 191 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHHH
Confidence 579999999999888776654 23 4999999999998887665431 11 013334555 778
Q ss_pred CCcCEEEEcccCCh--hHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 386 ~~aDlVi~avpe~~--~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
++||+|+.+++... .+ +. .+.+++++.|....|..
T Consensus 192 ~~ADIIvtaT~S~~~~Pv----l~--~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 192 EGADIITTVTADKTNATI----LT--DDMVEPGMHINAVGGDC 228 (346)
T ss_pred hcCCEEEEecCCCCCCce----ec--HHHcCCCcEEEecCCCC
Confidence 99999999997432 11 11 13568888776555543
No 376
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.42 E-value=0.017 Score=49.00 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=58.0
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCE
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (539)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+.. ...+.....+.+.. .. ..+.+|+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----~~~i~gd~~~~~~l----~~-------a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----VEVIYGDATDPEVL----ER-------AGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----SEEEES-TTSHHHH----HH-------TTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----cccccccchhhhHH----hh-------cCccccCE
Confidence 56999999999999999997779999999999988774421 00011000111100 00 23678999
Q ss_pred EEEcccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 391 VIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 391 Vi~avpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
||.+.+++.. ...+...+.+..+...+++-
T Consensus 66 vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 66 VVILTDDDEE-NLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp EEEESSSHHH-HHHHHHHHHHHTTTSEEEEE
T ss_pred EEEccCCHHH-HHHHHHHHHHHCCCCeEEEE
Confidence 9988875543 33333445555554555543
No 377
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.39 E-value=0.01 Score=61.58 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=64.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHH-C-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSGIATAHIL-N-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~-~-G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.++++|||+|.++......++. . .+ +|.+|+|++++.+...+++...+. +. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence 3579999999999999988876 3 23 999999999999887665432110 00 013344555 7
Q ss_pred CCCCcCEEEEcccCChh--HHHHHHHHHHHhCCCCeEEEecC
Q 009256 384 EFKDVDMVIEAVIESVP--LKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~--~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
++++||+|+.|++...+ .+..++. .+.+++++.|....
T Consensus 220 av~~ADIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig 259 (379)
T PRK06199 220 VVRGSDIVTYCNSGETGDPSTYPYVK--REWVKPGAFLLMPA 259 (379)
T ss_pred HHcCCCEEEEccCCCCCCCCcCcEec--HHHcCCCcEEecCC
Confidence 78999999998863220 1112221 23567888775433
No 378
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.33 E-value=0.014 Score=57.42 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=53.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-C---
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-D--- 381 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--- 381 (539)
.++|++||.|.+-.+.-...... |..|..+|+++++.+.+.+-+..... +. .++++.+ |
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~ 185 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLD 185 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGG
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhc
Confidence 35899999999876655444333 45789999999998877543331110 11 2222211 1
Q ss_pred c-cCCCCcCEEEEccc--CChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 382 Y-SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 382 ~-~~~~~aDlVi~avp--e~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
. .+++++|+|+.+.- .+.+-|+.++..|.+++++|+.|+.-
T Consensus 186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 1 35788999998863 24447999999999999999988743
No 379
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.24 E-value=0.027 Score=53.30 Aligned_cols=131 Identities=17% Similarity=0.183 Sum_probs=73.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|.+|..-+..|++.|.+|++++.+.. .+..+ .+.+.+. .+.-.-..+.+.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l-----------~~~~~i~---------~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLL-----------AEQGGIT---------WLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHH-----------HHcCCEE---------EEeCCCCHHHhCC
Confidence 4899999999999999999999999999987654 12211 2222211 0000111245789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCC--CCCCCeeeeecCCCCc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTS 465 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p--~~~~~~vei~~~~~t~ 465 (539)
+|+||.+. ++.++...+...- ....+++...+.... ..|+.| ...+++..-+.+.+.+
T Consensus 70 ~~lVi~at-~d~~ln~~i~~~a----~~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~s 129 (205)
T TIGR01470 70 AFLVIAAT-DDEELNRRVAHAA----RARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAA 129 (205)
T ss_pred cEEEEECC-CCHHHHHHHHHHH----HHcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCC
Confidence 99999775 4555555554433 222333322222111 112222 1334455556666667
Q ss_pred HHHHHHHHHHHHHc
Q 009256 466 AQVILDLMTVGKII 479 (539)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (539)
|.....++.-++.+
T Consensus 130 P~la~~lr~~ie~~ 143 (205)
T TIGR01470 130 PVLARLLRERIETL 143 (205)
T ss_pred cHHHHHHHHHHHHh
Confidence 77766666655543
No 380
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.13 E-value=0.01 Score=56.06 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 379999999999999999999997 899999883
No 381
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.12 E-value=0.02 Score=62.91 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=61.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
.+|-|+|.|.+|..++..|.++|++|+++|.|+++.+.+.+. ...+-.|..+..+. +. ...+++|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~---L~-------~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEEI---MQ-------LAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHH---HH-------hcCcccc
Confidence 579999999999999999999999999999999988877431 00000110010000 00 0236799
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
|.++.++++|.+... +...+.+..+.-.+++
T Consensus 483 ~~viv~~~~~~~~~~-iv~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGE-IVASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 999999987765432 3333444444444554
No 382
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.12 E-value=0.0057 Score=63.97 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=46.0
Q ss_pred EEEEcCCCCcHHHHHHHHHCC-C-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC--Cc-cCC
Q 009256 311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--DY-SEF 385 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~-~~~ 385 (539)
|.|+|+|.+|..++..|++.+ + +|++.|||.+++++..+.+ ....+.. -.+...+ ++ +.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--------~~~~~~~-------~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--------LGDRVEA-------VQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----------TTTTEEE-------EE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--------cccceeE-------EEEecCCHHHHHHHH
Confidence 789999999999999999986 4 8999999999988775432 1111000 0011111 12 457
Q ss_pred CCcCEEEEcccC
Q 009256 386 KDVDMVIEAVIE 397 (539)
Q Consensus 386 ~~aDlVi~avpe 397 (539)
+++|+||.|+|.
T Consensus 66 ~~~dvVin~~gp 77 (386)
T PF03435_consen 66 RGCDVVINCAGP 77 (386)
T ss_dssp TTSSEEEE-SSG
T ss_pred hcCCEEEECCcc
Confidence 899999999974
No 383
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.09 E-value=0.019 Score=66.38 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhCCHH-----HHhHHHHHHhhhhccCCCCCCcCCCCCCCcceEEEEcCCCCcHHHHHHHHHC-CCe
Q 009256 260 YSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIY 333 (539)
Q Consensus 260 ~~~l~~e~~~~~~~~~s~~-----~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~iA~~l~~~-G~~ 333 (539)
++.|+...+.+..+....+ ..+..+.|....+-+..-...........+++|+|||+|.||...+..|++. +++
T Consensus 516 ~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~~ 595 (1042)
T PLN02819 516 KEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTIS 595 (1042)
T ss_pred HHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCcc
Confidence 4455555555555543221 2455555554444332111111112334578999999999999999999875 334
Q ss_pred -------------EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc----cCCCCcCEEEEcc
Q 009256 334 -------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIEAV 395 (539)
Q Consensus 334 -------------V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~----~~~~~aDlVi~av 395 (539)
|++.|++++.++.+.+... + . ..+.. .+|. +.++++|+||.|+
T Consensus 596 ~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~---------~-~---------~~v~lDv~D~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 596 YYGDDSEEPTDVHVIVASLYLKDAKETVEGIE---------N-A---------EAVQLDVSDSESLLKYVSQVDVVISLL 656 (1042)
T ss_pred ccccccccccccEEEEECCCHHHHHHHHHhcC---------C-C---------ceEEeecCCHHHHHHhhcCCCEEEECC
Confidence 9999999988776543210 1 0 00111 1222 3347899999999
Q ss_pred cCCh
Q 009256 396 IESV 399 (539)
Q Consensus 396 pe~~ 399 (539)
|...
T Consensus 657 P~~~ 660 (1042)
T PLN02819 657 PASC 660 (1042)
T ss_pred Cchh
Confidence 9644
No 384
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.03 E-value=0.029 Score=62.15 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=62.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|.|+|.|.+|..+++.|.++|++++++|.|+++++.+.+.- ..+-.|-.+..+. +. ...+.+|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g-----~~v~~GDat~~~~---L~-------~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYG-----YKVYYGDATQLEL---LR-------AAGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCC-----CeEEEeeCCCHHH---HH-------hcCCccC
Confidence 5799999999999999999999999999999999988764310 0000110010000 00 0236789
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
|.+|.+++++... ..+...+.++.++-.+++-
T Consensus 466 ~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 466 EAIVITCNEPEDT-MKIVELCQQHFPHLHILAR 497 (601)
T ss_pred CEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEE
Confidence 9999999866543 3344445555555455553
No 385
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.02 E-value=0.013 Score=57.91 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=54.0
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||.|.. |.+++..|.+.|..|+++..... ++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--------------------------------------~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--------------------------------------DLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--------------------------------------CHHHHhh
Confidence 48999998877 99999999999999999764321 12 4478
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.||+||.+++..- ++.. +.+++++++++....
T Consensus 201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVGin 232 (285)
T PRK14189 201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVGMN 232 (285)
T ss_pred hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcccc
Confidence 9999999998322 2332 678899998865543
No 386
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.01 E-value=0.037 Score=59.40 Aligned_cols=41 Identities=24% Similarity=0.121 Sum_probs=37.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 58999999999999999999999999999999999887644
No 387
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.92 E-value=0.044 Score=58.50 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=36.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|+|+|.+|..++..|.+.|++|+++|++++.++.+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~ 40 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQ 40 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 3799999999999999999999999999999999877653
No 388
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.92 E-value=0.021 Score=56.07 Aligned_cols=95 Identities=23% Similarity=0.324 Sum_probs=64.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
.||+|||.|..|.--|+...--|-+|++.|+|.+++.++..... +.+. -..+...++ +.+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---------~rv~--------~~~st~~~iee~v~~ 231 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---------GRVH--------TLYSTPSNIEEAVKK 231 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC---------ceeE--------EEEcCHHHHHHHhhh
Confidence 48999999999999999888889999999999998887643221 1000 001111122 67899
Q ss_pred cCEEEEcc--cCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 388 VDMVIEAV--IESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 388 aDlVi~av--pe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
+|+||-+| |-..+ =+-+.++..+.++|+.+|++
T Consensus 232 aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 232 ADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred ccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEEE
Confidence 99999776 21111 12345677778899988875
No 389
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.89 E-value=0.016 Score=57.27 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=41.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC-
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 385 (539)
.||+|||+|.||..++..+.+. +.++..+ +++.. .+...+. .. .....+++++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHhc
Confidence 5899999999999999999875 5665543 33221 1111110 00 113334555443
Q ss_pred CCcCEEEEcccCC
Q 009256 386 KDVDMVIEAVIES 398 (539)
Q Consensus 386 ~~aDlVi~avpe~ 398 (539)
.+.|+|++|.|..
T Consensus 60 ~~~DvVve~t~~~ 72 (265)
T PRK13303 60 QRPDLVVECAGHA 72 (265)
T ss_pred cCCCEEEECCCHH
Confidence 5689999999854
No 390
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.88 E-value=0.036 Score=44.49 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEEeC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEV 339 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~d~ 339 (539)
++++|+|.|.+|.+++..+.+. +.+|++||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999999999998 678999886
No 391
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.86 E-value=0.025 Score=57.81 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
++|.|||+|.+|+.+|..|+..|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 379999999999999999999998 899999985
No 392
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.86 E-value=0.055 Score=57.76 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=38.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++..+.+.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999999999998777644
No 393
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.80 E-value=0.05 Score=58.28 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=36.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
.++.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5899999999999999999999999999999999877654
No 394
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.78 E-value=0.031 Score=55.33 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=38.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i 351 (539)
++|.|+|+|-.+.+++..|++.|. +|++++|+.++.+++.+.+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~ 170 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF 170 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 579999999999999999999995 8999999999988886654
No 395
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.69 E-value=0.036 Score=55.11 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=51.6
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||.|. .|.+++..|.+.|.+|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 4799999997 999999999999999999997432211 23578
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+|+||.+++....+ . .+.+++++++++..
T Consensus 203 aDIvI~AtG~~~~v-----~--~~~lk~gavViDvg 231 (283)
T PRK14192 203 ADIIVGAVGKPELI-----K--KDWIKQGAVVVDAG 231 (283)
T ss_pred CCEEEEccCCCCcC-----C--HHHcCCCCEEEEEE
Confidence 99999999522211 1 13467888877544
No 396
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.68 E-value=0.32 Score=52.99 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=89.2
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHH--
Q 009256 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV-- 91 (539)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (539)
..+.-|.+. .-+++....+.+..+++.+.+.. +-+|.|.-.|+.+ +.+ ..+ .......+.+++.
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGar-----l~~-----q~e-~~~~~~~~g~if~~~ 198 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGAN-----LPR-----QAE-VFPDRDHFGRIFYNQ 198 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-----Ccc-----ccc-ccchHhHHHHHHHHH
Confidence 334445553 48999999999999999887654 5566665333332 211 000 0000001112221
Q ss_pred HHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 92 ~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
..+.....|.|++|.|.|.|||.....+||++|++++ +.+++. |+...+. .+|+.++
T Consensus 199 ~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~~--~~Ge~v~ 256 (569)
T PLN02820 199 ARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVKA--ATGEEVS 256 (569)
T ss_pred HHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHHh--hcCcccC
Confidence 2245567999999999999999999999999999964 555431 2211111 3566666
Q ss_pred HHHHH-------HcCCcceecCcc-hHHHHHHHHHHHH
Q 009256 171 SEEGW-------KLGLIDAVVTSE-ELLKVSRLWALDI 200 (539)
Q Consensus 171 a~eA~-------~~Glv~~vv~~~-~l~~~a~~~a~~l 200 (539)
+++.- .-|.+|.++++| +..+.++++..-|
T Consensus 257 ~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 257 AEDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HHHhCCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 66542 468888888665 3334444444433
No 397
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.60 E-value=0.016 Score=52.39 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
++|.|||+|.+|...+..|.+.|++|++++.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 58999999999999999999999999999643
No 398
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.58 E-value=0.42 Score=51.64 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=88.2
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.-+... .-+++....+.+..+++.+.++. +-+|.|.-.| |+.+.+-.. ....+...+.. ....
T Consensus 86 v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~~-----~l~~~~~~~~~---~~~~ 151 (512)
T TIGR01117 86 AFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAVD-----ALKGYGDIFYR---NTIA 151 (512)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccch-----hhhhHHHHHHH---HHHH
Confidence 3444443 47888999999999999887664 4456664332 223321100 00111111111 1123
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCEEEeeCCc-eEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHH
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA 174 (539)
.-..|.|+++.|.|.||+......||++|+.+++ .+++. |+...+. .+|+.+++++.
T Consensus 152 s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a--------------------GP~vv~~--~~Ge~v~~e~l 209 (512)
T TIGR01117 152 SGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT--------------------GPQVIKT--VTGEEVTAEQL 209 (512)
T ss_pred cCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec--------------------ChHHHHh--hcCcccchhhc
Confidence 3458999999999999998888899999999864 44431 1111111 34555555554
Q ss_pred -------HHcCCcceecCcc-hHHHHHHHHHHHHH
Q 009256 175 -------WKLGLIDAVVTSE-ELLKVSRLWALDIA 201 (539)
Q Consensus 175 -------~~~Glv~~vv~~~-~l~~~a~~~a~~la 201 (539)
..-|.+|.+++++ +..+.+++|..-+-
T Consensus 210 GGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp 244 (512)
T TIGR01117 210 GGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLP 244 (512)
T ss_pred chHHHhccccceeEEecCChHHHHHHHHHHHHhCC
Confidence 2579999998554 56666666665553
No 399
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.55 E-value=0.064 Score=51.74 Aligned_cols=160 Identities=13% Similarity=0.144 Sum_probs=81.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhh-------------c
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-------------M 375 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------~ 375 (539)
||.|||+|-+|..+++.|+..|+ +++++|.+.-....+..++ +-..-.-|....+.....+. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQf---lf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQF---LFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcccc---CCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999999999999999999998 8999988744322221110 00000011100011111111 1
Q ss_pred ccccCCc--cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEec-CCCCChHHHhhccCCCCcEEEeccCCCCCC
Q 009256 376 LKGVLDY--SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN-TSTIDLNIVGEKTSSQDRIIGAHFFSPAHV 452 (539)
Q Consensus 376 i~~~~~~--~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~-ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~ 452 (539)
+....+. +-+++.|+||.++- +.+. +..+.+..... +..++.. +.+..- ...-..+....+....+..+...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence 1100111 34688999999874 4443 33344432222 2333332 222221 11111111112223334333344
Q ss_pred CCeeeeecCCCCcHHHHHHHHHHHH
Q 009256 453 MPLLEIVRTERTSAQVILDLMTVGK 477 (539)
Q Consensus 453 ~~~vei~~~~~t~~e~~~~~~~l~~ 477 (539)
.+...+-..|.+.+..+++++.++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 5666777788888888999988876
No 400
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.42 E-value=0.034 Score=56.90 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|.+|+.+|..|+..|+ +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 379999999999999999999999 999999874
No 401
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=95.41 E-value=0.093 Score=50.60 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=72.6
Q ss_pred cccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhh---ccC-CCCcEEEeccCCC
Q 009256 375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTS-SQDRIIGAHFFSP 449 (539)
Q Consensus 375 ~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~---~~~-~~~r~vg~h~~~p 449 (539)
.+++++|. ++++++|++|.-.|..-. ...+.+++.+++++++||+ ++=+++...+.. .+. ..-.+..+||-.-
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV 205 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV 205 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 45555554 999999999999985331 2367788999999999885 444555543332 232 2234556666443
Q ss_pred CCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 450 ~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
|.. +.-..+.-...++|.++++.++.++.|+.++.+
T Consensus 206 Pgt-~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 206 PEM-KGQVYIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred CCC-CCceecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 322 111122334569999999999999999999987
No 402
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.021 Score=60.32 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
.++|.|||.|.+|.++|..|.+.|++|+++|++++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 4689999999999999999999999999999887643
No 403
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.40 E-value=0.057 Score=52.78 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=41.9
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHH
Q 009256 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA 353 (539)
Q Consensus 307 ~~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~ 353 (539)
..+++.|-|+ +-+|..+|..|+++|++|+++.|++++++.+.++++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 4567888896 9999999999999999999999999999999887654
No 404
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=95.37 E-value=0.12 Score=49.96 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=73.0
Q ss_pred cccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccC-CCCcEEEeccCCC
Q 009256 375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSP 449 (539)
Q Consensus 375 ~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~-~~~r~vg~h~~~p 449 (539)
.++.++|. ++++++|++|.-.|..-. ...+.+++.+++++++||+ ++=+++.. .+.+.+. ..-.+..+||-.-
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaV 203 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCV 203 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCC
Confidence 45555555 999999999999985331 2367788999999999886 44445544 3333333 2234666676443
Q ss_pred CCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 450 ~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
|..-.-+=++ -...++|.++++.++.++.|+.++.+
T Consensus 204 Pgt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 204 PEMKGQVYIA-EGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCCCceEee-cccCCHHHHHHHHHHHHHhCCCeeec
Confidence 3222222233 34568999999999999999999987
No 405
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.35 E-value=0.013 Score=61.60 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|.+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999875
No 406
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.34 E-value=0.026 Score=44.53 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
||.|||+|..|.-+|..|.+.|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987755
No 407
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.31 E-value=0.032 Score=55.50 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=37.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|+|+|-.|.+++..|++.|. +|+++||++++.+.+.+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 479999999999999999999997 799999999988877554
No 408
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.30 E-value=0.022 Score=57.00 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=33.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCe-EEEEeCCh---HHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNS---EYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~-V~~~d~~~---~~~~~~ 347 (539)
+++.|+|+|-.|.+++..|+..|.. |++++|++ ++++.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l 169 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQT 169 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHH
Confidence 4688999999999999999999986 99999997 444443
No 409
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.28 E-value=0.14 Score=49.14 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC---eEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI---YVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~---~V~~~d~~ 340 (539)
++|.|+|+|.+|.+++..|...|. +|+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 489999999999999999999997 49999999
No 410
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=95.26 E-value=0.048 Score=54.12 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++||+|.|.+|+.+|.++..-|..|+.||+= +.....+ . .+...+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~-------------gvq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------F-------------GVQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------c-------------cceeeeHHHHHhh
Confidence 58999999999999999999999999999853 3322211 1 1222222267889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+|-.-+|-.++.+.-+-.+....++.+.-|+..+-+
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG 238 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG 238 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence 99999999988877666656666778888877644433
No 411
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.26 E-value=0.17 Score=49.19 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=64.5
Q ss_pred HHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHH
Q 009256 93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (539)
Q Consensus 93 ~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~ 172 (539)
.+.++++|+||.|=|---+||.-=..-+|.+.+-++++|+. +.|.+.++..|-. ..+|.+. .....|+|+
T Consensus 183 em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eA-Ae~mkita~ 252 (317)
T COG0825 183 EMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEA-AEAMKITAH 252 (317)
T ss_pred HHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHH-HHHcCCCHH
Confidence 48899999999999988777766666789999999999983 4566565554433 2444443 345679999
Q ss_pred HHHHcCCcceecCc
Q 009256 173 EGWKLGLIDAVVTS 186 (539)
Q Consensus 173 eA~~~Glv~~vv~~ 186 (539)
+.+++|+||.|+|+
T Consensus 253 dLk~lgiID~II~E 266 (317)
T COG0825 253 DLKELGIIDGIIPE 266 (317)
T ss_pred HHHhCCCcceeccC
Confidence 99999999999975
No 412
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=95.21 E-value=0.037 Score=47.35 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHh-h-hhccCCCC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA-Q-RATSKVPN 297 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~-k-r~~~~~~~ 297 (539)
+...+.+.++++...++++.+++|...-..++..+|+.|||+|-+= | +.|+|.|.
T Consensus 47 Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~ 103 (118)
T PF13766_consen 47 SLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSPA 103 (118)
T ss_dssp HHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SSS
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCCC
Confidence 4456678899999999999999999999999999999999999764 4 56877663
No 413
>PRK06153 hypothetical protein; Provisional
Probab=95.17 E-value=0.035 Score=56.93 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (539)
+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus 178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred cEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 79999999999999999999998 89999876
No 414
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.16 E-value=0.065 Score=54.99 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=57.5
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--c
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 383 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 383 (539)
|.||+|||+ |.+|..++..|.++ +++++.+-.+.+..+...+.. .. +. +.. ... ..+. .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~----~~-~~-~~~----------~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVH----PH-LR-GLV----------DLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhC----cc-cc-ccc----------Cce-eecCCHH
Confidence 468999997 99999999999876 677765433322212121110 00 00 000 001 1111 1
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
...++|+|+.|+|.+.. ..+..++ ...++.|+++++.....
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence 35689999999996543 2333333 34678888998876663
No 415
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.16 E-value=0.061 Score=53.12 Aligned_cols=101 Identities=21% Similarity=0.118 Sum_probs=54.9
Q ss_pred ceEEEEc-CCCCcHHHHHHHHH-CCCeEE-EEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~-~G~~V~-~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.||+|+| +|.||..++..+.+ .+++++ ++|++ ++...+-... .. +... ..+..+++++.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~-------~~--~~~~--------~gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGE-------LA--GIGK--------VGVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHH-------hc--CcCc--------CCceeeCCHHH
Confidence 4899999 69999999999986 477766 46743 3321110000 00 0000 01333455533
Q ss_pred C-CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 009256 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (539)
Q Consensus 385 ~-~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i 431 (539)
+ .++|+||++.+. ..-..... ..+..+.-+++.+++.+..+.
T Consensus 65 l~~~~DvVIdfT~p--~~~~~~~~---~al~~g~~vVigttg~~~e~~ 107 (266)
T TIGR00036 65 VETDPDVLIDFTTP--EGVLNHLK---FALEHGVRLVVGTTGFSEEDK 107 (266)
T ss_pred hcCCCCEEEECCCh--HHHHHHHH---HHHHCCCCEEEECCCCCHHHH
Confidence 3 468999999873 32333333 333344444444557665543
No 416
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.11 E-value=0.072 Score=54.60 Aligned_cols=105 Identities=14% Similarity=0.020 Sum_probs=55.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHH-HHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~ 384 (539)
.||+|+|+|.||..++..+..+ +++|+.+ |++++....+.++. .++. .+... .... -.-..+....+. +.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccCc-cccccccCCceEEcCChhHh
Confidence 4899999999999999988764 5677654 65654443332210 0000 00000 0000 000123334444 44
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+.++|+||+|.|..... .... .++..++.++++++
T Consensus 76 ~~~vDVVIdaT~~~~~~--e~a~---~~~~aGk~VI~~~~ 110 (341)
T PRK04207 76 LEKADIVVDATPGGVGA--KNKE---LYEKAGVKAIFQGG 110 (341)
T ss_pred hccCCEEEECCCchhhH--HHHH---HHHHCCCEEEEcCC
Confidence 57899999999855432 3322 33344555665554
No 417
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.10 E-value=0.059 Score=45.98 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=53.3
Q ss_pred ceEEEEc----CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG----~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
++|+||| -+.+|.-+...|.++|++|+.++...+.+ .......++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 4799999 58889999999999999999998765321 22344555533
Q ss_pred C-CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 385 ~-~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
. ...|+++.++| ++...++++++...- .+.+++
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~g-~~~v~~ 85 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAALG-VKAVWL 85 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHHT--SEEEE
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHcC-CCEEEE
Confidence 4 78999999998 655667888876653 344443
No 418
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.10 E-value=0.085 Score=46.56 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=53.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|+|- ...|.+++..|.+.|.+|+.++.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 48999996 56699999999999999999986532111 34688
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++...-++ .+.+++++++++....
T Consensus 72 ADIVvsAtg~~~~i~-------~~~ikpGa~Vidvg~~ 102 (140)
T cd05212 72 ADVVVVGSPKPEKVP-------TEWIKPGATVINCSPT 102 (140)
T ss_pred CCEEEEecCCCCccC-------HHHcCCCCEEEEcCCC
Confidence 999999997553332 2357899988754433
No 419
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.09 E-value=0.063 Score=48.47 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=48.1
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+ ..|.+++..|.++|..|++++.+-..++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 589999976 5899999999999999999886642222 23578
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
||+||.++...--++ .+.+++++++++.....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CEE
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCCcc
Confidence 999999997433222 24578999988765543
No 420
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.06 E-value=0.1 Score=57.94 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=60.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~ 386 (539)
++|-|+|.|.+|..+++.|.++|++++++|.|+++++.+.+. ...+-.|-.+.. +-+ ..+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi~ 463 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRM------------DLLESAGAA 463 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCH------------HHHHhcCCC
Confidence 579999999999999999999999999999999998877431 000111100000 001 2367
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
++|++|.++.++.. ...+...+.++.++-.+++
T Consensus 464 ~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 464 KAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence 89999999865443 3333344445444444554
No 421
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.14 Score=50.05 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=35.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+ |.+|..++..|+++|++|++++++++..+...+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57999985 999999999999999999999999876665433
No 422
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.04 E-value=0.031 Score=58.28 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=34.7
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~i-A~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
+||.++|+|.||++. ...|.+.|++|+++|++++.++.+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~ 42 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNK 42 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhc
Confidence 379999999999855 77888899999999999887777644
No 423
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.93 E-value=0.12 Score=53.35 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=35.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
+|.|+|+|.+|...+..+...|. +|++.|+++++++.+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 79999999999999888777884 88888999999998755
No 424
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.91 E-value=0.064 Score=52.96 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=52.7
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-|. .|.+++..|.+.|..|+++...-..++ +.++.
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 4899999877 899999999999999999975422111 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
||+||.+++-.--+. .+.+++++++++..
T Consensus 203 ADIvi~avG~p~~v~-------~~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIP-------GEWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCccccc-------HHHcCCCcEEEEcc
Confidence 999999994222121 25688999988655
No 425
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.85 E-value=1 Score=45.74 Aligned_cols=41 Identities=24% Similarity=0.153 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|+|+|+|-+|..-.+.....|.+|+.+|+++++.+.+++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 48999999965554444444489999999999999887644
No 426
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.85 E-value=0.15 Score=48.63 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=49.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|.++..=+..|++.|-+|+++...-. .+... ...+.+.. +.-.-+.+.+.+
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l-----------~~~~~i~~---------~~r~~~~~dl~g 85 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDL-----------KKYGNLKL---------IKGNYDKEFIKD 85 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHH-----------HhCCCEEE---------EeCCCChHHhCC
Confidence 3799999999999999999999999999965421 12211 22222110 100111255789
Q ss_pred cCEEEEcccCChhHHHHHHH
Q 009256 388 VDMVIEAVIESVPLKQKIFS 407 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~ 407 (539)
+++||.|+ +|.++-+.+.+
T Consensus 86 ~~LViaAT-dD~~vN~~I~~ 104 (223)
T PRK05562 86 KHLIVIAT-DDEKLNNKIRK 104 (223)
T ss_pred CcEEEECC-CCHHHHHHHHH
Confidence 99999886 46665555443
No 427
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.82 E-value=0.067 Score=44.55 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
++|.|||.|.+|..=+..|++.|.+|+++..+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 589999999999999999999999999999886
No 428
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.78 E-value=0.086 Score=52.08 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=52.5
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||.| ..|.++|..|.++|..|+++......+. +.++.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 489999998 8899999999999999999864432211 23678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
||+||.++...--+. .+.+++++++++...
T Consensus 201 ADIvV~AvG~p~~i~-------~~~vk~GavVIDvGi 230 (285)
T PRK14191 201 ADIVCVGVGKPDLIK-------ASMVKKGAVVVDIGI 230 (285)
T ss_pred CCEEEEecCCCCcCC-------HHHcCCCcEEEEeec
Confidence 999999996322222 235689998876543
No 429
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.75 E-value=0.07 Score=51.14 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=34.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++|.|.|+ |.+|..++..|+++|++|++++++++.....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 47889985 9999999999999999999999998765544
No 430
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=94.69 E-value=0.48 Score=45.76 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=104.6
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHH
Q 009256 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (539)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (539)
++...++-. -.-.+..-.=+.+..+++.+-.+ ...+|+++..| |+-++|-.- ..-++.... ..+ .+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSG-----GARMQEg~l-----SLMQMakts-aAl-~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASG-----GARMQEGIL-----SLMQMAKTS-AAL-KR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCc-----chhHhHHHH-----HHHHHHHHH-HHH-HH
Confidence 444455443 23667777778888899888765 47788888765 333322100 011122212 233 55
Q ss_pred HHhCCCcEEEEEcCccccch-hHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHH
Q 009256 94 IEDCKKPIVAAVEGLALGGG-LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (539)
Q Consensus 94 i~~~~~p~iaav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~ 172 (539)
+.+-..|.|+.+..+..||= ..+++..|+.||-+.|.+||..-++= -+..-..++ .| -=.++
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQTire~LP---------eg-fQ~aE 253 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQTIREKLP---------EG-FQTAE 253 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-------hhhhcccCC---------cc-hhhHH
Confidence 88899999999999999886 48999999999999998887644320 000000010 11 12567
Q ss_pred HHHHcCCcceecCcchHHHHHHHHHHHHHhcCc
Q 009256 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 205 (539)
Q Consensus 173 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~ 205 (539)
-.++.|+||.||+..++......+...+...++
T Consensus 254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQPA 286 (294)
T ss_pred HHHHcCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence 778999999999999999888887777666554
No 431
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.66 E-value=0.19 Score=46.65 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=56.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc--CC----
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD---- 381 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~---- 381 (539)
++|.|||- ...|.++|..|.++|..|+++|++.-..-. +.+.+. -+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~~----------hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESIR----------HEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------cccccc----------cccccccchhhH
Confidence 58999996 455999999999999999999876432110 000000 0001 11
Q ss_pred c-cCCCCcCEEEEcccCChh-HHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 382 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 382 ~-~~~~~aDlVi~avpe~~~-~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
+ +.++.||+||.+++..-- ++. +.+++++++++.....
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~~ 159 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASIK 159 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCCc
Confidence 2 557999999999973332 222 3567999998766543
No 432
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.64 E-value=0.16 Score=55.19 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=35.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|.|+ |.+|..++..|++.|++|++++|+.++++...+.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~ 123 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQS 123 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 46888886 9999999999999999999999999887665443
No 433
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.088 Score=50.55 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=36.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|+|+ |.+|..++..|++.|++|++++|+++..+...+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~ 49 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAE 49 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHH
Confidence 57889985 9999999999999999999999998876665443
No 434
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.55 E-value=0.043 Score=58.58 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 589999999999999999999999999999985
No 435
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.54 E-value=0.62 Score=44.15 Aligned_cols=131 Identities=22% Similarity=0.217 Sum_probs=77.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||.|..|..=+..|++.|-+|+++..+. +.+... ...+.+. .+.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~-----------~~~~~i~---------~~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKAL-----------IEEGKIK---------WIEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHH-----------HHhcCcc---------hhhcccChhhhcC
Confidence 489999999999999999999999999998775 222222 2222221 1111112255667
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC--CCCCeeeeecCCCCc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~--~~~~~vei~~~~~t~ 465 (539)
+++||.+++ |.++.+.+++.-.++ .+++ |....+ +. ..|+.|. ...++..-+.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~p-----------~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDDP-----------EL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCCc-----------cc---CceecceeeccCCeEEEEECCCCC
Confidence 999998875 666666665544332 2333 222211 11 2222222 334555566677778
Q ss_pred HHHHHHHHHHHHHc
Q 009256 466 AQVILDLMTVGKII 479 (539)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (539)
|.....++.-.+.+
T Consensus 133 P~la~~ir~~Ie~~ 146 (210)
T COG1648 133 PVLARLLREKIEAL 146 (210)
T ss_pred hHHHHHHHHHHHHH
Confidence 87777777666553
No 436
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.48 E-value=0.11 Score=51.51 Aligned_cols=41 Identities=20% Similarity=0.024 Sum_probs=36.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
+++.|+|+|-.+.+++..|++.|. +|++++|++++.+.+.+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~ 164 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAE 164 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 379999999999999999999997 69999999988776644
No 437
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.44 E-value=0.088 Score=54.69 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=60.3
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--
Q 009256 307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (539)
Q Consensus 307 ~~~kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 382 (539)
..+||+|+|+ |..|..+...|..+ +++|+.+..+...-+...... .. +..+ ......+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~----~~-l~~~------------~~~~~~~~~~ 99 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVF----PH-LITQ------------DLPNLVAVKD 99 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhC----cc-ccCc------------cccceecCCH
Confidence 3458999997 99999999999988 679999877644322211100 00 0000 00001111
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+.++++|+||.|+|.. .-..+... +..++.|+++++.....
T Consensus 100 ~~~~~~DvVf~Alp~~--~s~~i~~~----~~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 100 ADFSDVDAVFCCLPHG--TTQEIIKA----LPKDLKIVDLSADFRLR 140 (381)
T ss_pred HHhcCCCEEEEcCCHH--HHHHHHHH----HhCCCEEEEcCchhccC
Confidence 3368899999999854 23333333 34567888888765544
No 438
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.40 E-value=0.15 Score=50.24 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=54.2
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+ ..|.++|..|...|..|+++..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 489999988 7899999999999999999987643222 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++-..-+. .+.+++++++++....
T Consensus 196 ADIvI~Avgk~~lv~-------~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFIT-------PDMVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccC-------HHHcCCCcEEEEeecc
Confidence 999999997322122 2236899998875543
No 439
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.39 E-value=0.13 Score=52.59 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=49.2
Q ss_pred cceEEEEcCCCCc-HHHHHHHHHCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 308 VRKVAVIGGGLMG-SGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG-~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
+.||||||+|.++ ...+..+.+.+. -|-++|+++++++...+.. +.-...+++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~----------------------~~~~~~~~~~ 60 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF----------------------GIAKAYTDLE 60 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc----------------------CCCcccCCHH
Confidence 4589999998554 567778877653 4667799999987765432 111234455
Q ss_pred cCCC--CcCEEEEcccCChhH
Q 009256 383 SEFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 383 ~~~~--~aDlVi~avpe~~~~ 401 (539)
+.++ +.|+|++++|.+...
T Consensus 61 ~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 61 ELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHhcCCCCCEEEEcCCChhhH
Confidence 3343 379999999977764
No 440
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.35 E-value=0.17 Score=53.14 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=30.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC------eEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~------~V~~~d~~~~ 342 (539)
||.|||+|-+|..+++.|+..|+ +++++|.+.-
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCc
Confidence 58999999999999999999998 8999997744
No 441
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.34 E-value=0.15 Score=55.01 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCCCcCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 296 PNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 296 ~~~~~~~~~~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|+...++.. ..-++|.|||+|..|.++|..|.+.|++|+++|.++.
T Consensus 5 ~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 5 PGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred cchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 344445543 2346899999999999999999999999999997653
No 442
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.31 E-value=0.1 Score=43.73 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=61.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CC----
Q 009256 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD---- 381 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~---- 381 (539)
.+|.-||+|. +.++..+++ .|.+|+.+|.+++.++.+.+.... .+.- .++++. .+
T Consensus 3 ~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT--GRLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EGLS---------DRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TTTT---------TTEEEEESCCHGG
T ss_pred CEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cCCC---------CCeEEEECccccC
Confidence 3788999998 445555555 899999999999999988765411 1100 122211 11
Q ss_pred ccCCCCcCEEEEcc-c----CChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 382 YSEFKDVDMVIEAV-I----ESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 382 ~~~~~~aDlVi~av-p----e~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
.+.....|+|+... . ...+..+.+++++.+.++|+..++.
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 13445789999766 1 1124466778889999998876653
No 443
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.31 E-value=0.098 Score=52.25 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=33.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH---HHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE---YLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~---~~~~~~ 348 (539)
+++.|+|+|-.+.+++..++..|. +|++++|+++ +++.+.
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la 168 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFA 168 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHH
Confidence 479999999999999999999886 8999999964 444443
No 444
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.31 E-value=0.18 Score=48.60 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (539)
.+|.|+|+|-+|+.++..|++.|. +++++|.+.-
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 379999999999999999999998 9999997753
No 445
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.16 E-value=0.17 Score=48.73 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|.+|+.+|..|+..|+ +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 379999999999999999999998 899997664
No 446
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.15 E-value=0.22 Score=51.81 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (539)
+|.|||+|-.|+.++..|+..|. +++++|.+
T Consensus 137 ~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 137 RVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 79999999999999999999998 89999988
No 447
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.14 E-value=0.092 Score=56.49 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=33.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
..++|.|+|+|..|.++|..|.+.|++|+++|+++..
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 4468999999999999999999999999999987653
No 448
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.12 E-value=0.13 Score=49.08 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
++|+|.|.|++|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 489999999999999999999988 566778887
No 449
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.07 E-value=0.11 Score=53.28 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=57.4
Q ss_pred eEEEEcC-CCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc-cC
Q 009256 310 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-SE 384 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~ 384 (539)
||+|||+ |.+|..+...|.++ +++++ +++.+...-+...+.. .. +. +.. ...+. .+. +.
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~----~~-l~-~~~----------~~~~~~~~~~~~ 65 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVH----PH-LR-GLV----------DLNLEPIDEEEI 65 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhC----cc-cc-ccC----------CceeecCCHHHh
Confidence 7999998 99999999999976 66887 5565543222211100 00 00 000 01111 122 22
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+.++|+||.|+|.... .++..++. ..++.|+++++.....
T Consensus 66 ~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 66 AEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhhcC
Confidence 3589999999995543 34433332 4578888888876544
No 450
>PLN03075 nicotianamine synthase; Provisional
Probab=94.06 E-value=0.25 Score=49.18 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=66.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc--
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-- 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~-- 382 (539)
.++|..||.|..|.+-...++.. +-.++.+|++++.++.+++.+.. ..+ +. .++++. .|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L~--------~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-LS--------KRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-cc--------CCcEEEECchhh
Confidence 36899999999877654444333 34799999999999988664321 011 00 223321 111
Q ss_pred --cCCCCcCEEEEcccC--ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 383 --SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 383 --~~~~~aDlVi~avpe--~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
....+.|+|+..+-- +..-++.+++.+.+.++||.+++.-+
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 235689999987522 23567899999999999998877544
No 451
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.06 E-value=0.16 Score=50.25 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=52.5
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+. .|.+++..|.+.|..|++++..-..+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 4899999877 899999999999999999984321111 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.++.-.--+. .+.+++++++++..+.
T Consensus 208 ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGin 238 (287)
T PRK14176 208 ADILVVATGVKHLIK-------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred CCEEEEccCCccccC-------HHHcCCCcEEEEeccc
Confidence 999998774222111 2367899998875543
No 452
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=94.04 E-value=0.36 Score=52.08 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=102.7
Q ss_pred cCcEEEEEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-.-|.=|+|.. -+++++-.....+.++.++.. ++-+|.|.-. +.|..|-+-+ .........++
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt-pGf~~g~~~E----------~~g~~~~ga~~ 359 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT-PGFMPGPEAE----------RAGIIRAGARL 359 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE-CEB--SHHHH----------HTTHHHHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec-ccccccchhh----------hcchHHHHHHH
Confidence 34333344466653 379999999999999998874 5667777532 3465554322 11223445566
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhcc----CEEEeeCCceEeCCcccCCCCCCcchhhcccccc-------CH-H
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------GL-S 157 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~~----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v-------G~-~ 157 (539)
+ .++.+++.|+|..|-|.++|||..-.... |+++|.++++++ ++++-+....+.+.- |. .
T Consensus 360 ~-~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~ 431 (493)
T PF01039_consen 360 L-YALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADP 431 (493)
T ss_dssp H-HHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSH
T ss_pred H-HHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchh
Confidence 6 78999999999999999999887555555 788777777766 444444433322210 00 0
Q ss_pred H--HHHHHH--cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 009256 158 K--AIEMML--LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (539)
Q Consensus 158 ~--a~~l~l--~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (539)
. ..+.+- .-+..++..+.+.|++|.|+++.+..........-+.+.+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~~ 482 (493)
T PF01039_consen 432 EAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQKP 482 (493)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhCc
Confidence 0 111111 1122588999999999999999998887777666555543
No 453
>PRK05868 hypothetical protein; Validated
Probab=94.03 E-value=0.041 Score=57.25 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=33.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
|++|.|||+|.-|...|..|+++|++|+++|++++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 568999999999999999999999999999988653
No 454
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.00 E-value=0.042 Score=56.62 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|-+|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 379999999999999999999998 899999875
No 455
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.95 E-value=0.078 Score=53.76 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=31.9
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
||.|+|+ |.+|+.++..|.++||+|++++|+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 7999995 9999999999999999999999997653
No 456
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.94 E-value=0.11 Score=50.86 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=52.6
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++.|||.+.+ |.+|+..|.+.++.|+++...-..+. +.++.
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~-------------------------------------~~~k~ 199 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLA-------------------------------------SITKN 199 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHH-------------------------------------HHhhh
Confidence 47999998665 99999999999999999875431111 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.++.-.- ++. .+.+++++++++....
T Consensus 200 ADIvv~AvG~p~-----~i~--~d~vk~gavVIDVGin 230 (283)
T COG0190 200 ADIVVVAVGKPH-----FIK--ADMVKPGAVVIDVGIN 230 (283)
T ss_pred CCEEEEecCCcc-----ccc--cccccCCCEEEecCCc
Confidence 999999985222 222 3567888888865543
No 457
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.92 E-value=0.14 Score=49.56 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=54.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-----------CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc-
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML- 376 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i- 376 (539)
.+|.|||+|-.|+.++..|++.| .+++++|.+.-....+..++ -...+-|....+.....+..+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl----f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA----FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc----CChhHCCcHHHHHHHHHHHhcc
Confidence 48999999999999999999864 28999997743332222111 001112221111112222211
Q ss_pred ----cccC----CccCCCCcCEEEEcccCChhHHHHHHHHHHH
Q 009256 377 ----KGVL----DYSEFKDVDMVIEAVIESVPLKQKIFSELEK 411 (539)
Q Consensus 377 ----~~~~----~~~~~~~aDlVi~avpe~~~~~~~~~~~l~~ 411 (539)
.... ..+.+.++|+||.|+ ++...+..+.+....
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 1100 012256799999998 466666666555544
No 458
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.91 E-value=0.051 Score=41.49 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=26.7
Q ss_pred EEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 313 VIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 313 iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|||+|.-|.+.|..|.++|++|++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999885
No 459
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.88 E-value=0.027 Score=55.83 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
||.|||+|.+|+.+|+.|+..|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999999997 888888653
No 460
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.88 E-value=0.052 Score=57.17 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=31.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
+|.|||+|.+|.++|..|+++|++|+++|+++.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999754
No 461
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.83 E-value=0.12 Score=51.06 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=53.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||- ...|.+++..|.++|..|++++.....++ +.+++
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~-------------------------------------~~~~~ 202 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLP-------------------------------------SIVRQ 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 48999996 66699999999999999999874321111 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.++.-.- ++. .+++++++++++....
T Consensus 203 ADIvIsAvGk~~-----~i~--~~~ik~gavVIDvGin 233 (284)
T PRK14177 203 ADIIVGAVGKPE-----FIK--ADWISEGAVLLDAGYN 233 (284)
T ss_pred CCEEEEeCCCcC-----ccC--HHHcCCCCEEEEecCc
Confidence 999999986322 222 3467899998876543
No 462
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=93.83 E-value=0.31 Score=48.69 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=53.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHHhhcccccCCccCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 385 (539)
-||+|||+|.+|......+.+. +.++. ++|++++....... .+.|.-. ....+..+. ...+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 3799999999999987777754 56665 67898864321111 1112100 001111100 0124
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+.|+|+++.|.... .+.... ....++.++++++.
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a~~---a~eaGk~VID~sPA 103 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHAAK---LREAGIRAIDLTPA 103 (302)
T ss_pred CCCCEEEECCCHHHH--HHHHHH---HHHcCCeEEECCcc
Confidence 679999999985443 233222 34467777776653
No 463
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=93.78 E-value=0.7 Score=43.99 Aligned_cols=101 Identities=17% Similarity=0.055 Sum_probs=59.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhH-hcCCCCHHHHHHHhhcccc-cCCccC---
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV-TRGKLTQDKANNALKMLKG-VLDYSE--- 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~i~~-~~~~~~--- 384 (539)
+|-++|+|. +.-|..|+++|++|+.+|+++..++.+.+.. .+.... ..+..... .-.++++ ..|...
T Consensus 37 rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~--~~~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 37 RVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFAEN--GLTPTVTQQGEFTRY----RAGNIEIFCGDFFALTA 108 (213)
T ss_pred eEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHHHc--CCCcceeccccceee----ecCceEEEEccCCCCCc
Confidence 799999998 7888889999999999999999988753210 000000 00000000 0011221 112211
Q ss_pred --CCCcCEEEEcc---cCChhHHHHHHHHHHHhCCCCeE
Q 009256 385 --FKDVDMVIEAV---IESVPLKQKIFSELEKACPPHCI 418 (539)
Q Consensus 385 --~~~aDlVi~av---pe~~~~~~~~~~~l~~~~~~~~i 418 (539)
...-|.|+++. .-.++.....++.+.+.++|+..
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 22358787643 11355677788999999999863
No 464
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.78 E-value=0.16 Score=52.58 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
+|.|||+|-+|+.++..|+..|. +++++|.+.
T Consensus 43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 79999999999999999999997 999999873
No 465
>PRK06270 homoserine dehydrogenase; Provisional
Probab=93.77 E-value=0.17 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN 330 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~ 330 (539)
-+|+|+|+|.||..++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 3799999999999999998765
No 466
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.73 E-value=0.15 Score=49.76 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (539)
.+|.|||+|.+|+.++..|+..|. +++++|.+.-
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 379999999999999999999997 8999987643
No 467
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.73 E-value=0.11 Score=52.98 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=34.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-C-CeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+ |.||+.++++|+.+ | .+|++++|+++++..+.+
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~ 199 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQA 199 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHH
Confidence 47999998 89999999999864 5 599999999887766543
No 468
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.69 E-value=0.15 Score=49.32 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=35.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+...+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~ 48 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAK 48 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888886 999999999999999999999999876655543
No 469
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.69 E-value=0.18 Score=49.67 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=30.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (539)
+|.|||+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 79999999999999999999994 8999998743
No 470
>PRK08223 hypothetical protein; Validated
Probab=93.67 E-value=0.23 Score=49.23 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=31.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLL 345 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~ 345 (539)
+|.|||+|-+|+.++..|+..|. +++++|.+.-...
T Consensus 29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~S 65 (287)
T PRK08223 29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELR 65 (287)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchh
Confidence 79999999999999999999998 8999998754433
No 471
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.66 E-value=0.19 Score=48.25 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEE-EEeC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEV 339 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~-~~d~ 339 (539)
++|+|.|.|.+|..++..|.+.|..|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 589999999999999999999999998 6677
No 472
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.65 E-value=0.22 Score=50.09 Aligned_cols=147 Identities=21% Similarity=0.227 Sum_probs=81.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCe---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.+|||+|+ |..|..|...|.+..++ +.++-.....-++. .+-+.-+ ..-.....+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~-----------~~f~~~~-------~~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY-----------IEFGGKS-------IGVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc-----------ccccCcc-------ccCccccccccc
Confidence 48999986 99999999999996553 34443222211110 1100000 000111123356
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCC----Ceeeeec
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM----PLLEIVR 460 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~----~~vei~~ 460 (539)
.+++|+++-|.+.+.. +.+..++. ..|+++++|+|...+..=.. +-+...||-+.. +...+..
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~DVP--------LVVPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDPDVP--------LVVPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCCCCC--------EecCCcCHHHHHhhhhCCCEEEC
Confidence 7799999999985554 44444443 46799999999876652111 111112221111 0112334
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
...+.....-.+.+|++..+-+-+.+
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEEE
Confidence 44456677788899999888555544
No 473
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.64 E-value=0.67 Score=44.26 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=60.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhh-HhcCCCCHHHHHHHhhcccc-cCCc----
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL-VTRGKLTQDKANNALKMLKG-VLDY---- 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~-~~~~---- 382 (539)
.+|-++|+|. +.-+..|+++|++|+.+|.++..++.+..+. .+... ...+... . ..-.++++ ..|.
T Consensus 39 ~rvL~~gCG~--G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~--~l~~~~~~~~~~~---~-~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 39 SRVLVPLCGK--SLDMLWLAEQGHEVLGVELSELAVEQFFAEN--GLTPQTRQSGEFE---H-YQAGEITIYCGDFFALT 110 (218)
T ss_pred CeEEEeCCCC--hHhHHHHHhCCCeEEEEccCHHHHHHHHHHc--CCCcccccccccc---c-cccCceEEEECcccCCC
Confidence 3799999998 6788889999999999999999988763210 00000 0000000 0 00011221 1111
Q ss_pred -cCCCCcCEEEEcc---cCChhHHHHHHHHHHHhCCCCe
Q 009256 383 -SEFKDVDMVIEAV---IESVPLKQKIFSELEKACPPHC 417 (539)
Q Consensus 383 -~~~~~aDlVi~av---pe~~~~~~~~~~~l~~~~~~~~ 417 (539)
+.....|+|++.. .-.++.....++.+.+.++|+.
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 1223458888543 1136667888899999999985
No 474
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.62 E-value=0.12 Score=50.47 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=36.1
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
|+++.|+|+ |.+|..++..|++.|++|++++++++.++.+.+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 357889985 899999999999999999999999887766544
No 475
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.2 Score=49.40 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=35.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|.|+ |.+|..++..|+++|++|++.+++++.++...+
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 47888886 889999999999999999999999988766544
No 476
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.54 E-value=0.16 Score=49.41 Aligned_cols=43 Identities=26% Similarity=0.166 Sum_probs=36.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
++|.|.|+ |.+|..+|..|++.|++|++.+++++..+...+.+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 46888875 89999999999999999999999988766654443
No 477
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=93.49 E-value=0.19 Score=50.45 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=34.5
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHH
Q 009256 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (539)
Q Consensus 307 ~~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 345 (539)
..++|.|-|+ |.+|+-+...|+.+||.|..--|+++..+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k 44 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEK 44 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhh
Confidence 3468999996 99999999999999999999999988733
No 478
>PLN00016 RNA-binding protein; Provisional
Probab=93.47 E-value=0.18 Score=52.46 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=32.6
Q ss_pred cceEEEE----cC-CCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 308 VRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iI----G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
.++|.|+ |+ |.+|..++..|+++||+|++++|+++.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 4689999 75 999999999999999999999998765
No 479
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.44 E-value=0.3 Score=48.36 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=52.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||- ..+|.++|..|.++|..|++++.....++ +.++.
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~-------------------------------------~~~~~ 201 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLA-------------------------------------ELTKQ 201 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHH-------------------------------------HHHHh
Confidence 48999995 66799999999999999999864422111 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.++.-.--+. .+.+++++++++....
T Consensus 202 ADIvI~AvG~p~~i~-------~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 202 ADILIVAVGKPKLIT-------ADMVKEGAVVIDVGVN 232 (284)
T ss_pred CCEEEEecCCCCcCC-------HHHcCCCCEEEEeecc
Confidence 999999986322222 2456899998875533
No 480
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.43 E-value=0.19 Score=49.17 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=36.6
Q ss_pred ceEEEEcC-C-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
+++.|.|+ | -+|..++..|++.|++|++.+++++.++...+.+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 57889997 6 5999999999999999999999988777665544
No 481
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.41 E-value=0.071 Score=54.37 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
.|.|||+|..|.++|..|++.|++|+++|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999988
No 482
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.40 E-value=0.17 Score=49.10 Aligned_cols=39 Identities=23% Similarity=0.151 Sum_probs=34.1
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
+|.|+|+ |.+|..++..|++.|++|++++++++.++...
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 6888985 88999999999999999999999988766543
No 483
>PRK00536 speE spermidine synthase; Provisional
Probab=93.39 E-value=0.81 Score=44.88 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=64.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC-C
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE-F 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~ 385 (539)
.++|-|||+|- ++.++-++++.-+|+++|+|++.++.+++.+-. +....+. .+++..... +. -
T Consensus 73 pk~VLIiGGGD--Gg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~-~~~~~~D------------pRv~l~~~~~~~~~ 137 (262)
T PRK00536 73 LKEVLIVDGFD--LELAHQLFKYDTHVDFVQADEKILDSFISFFPH-FHEVKNN------------KNFTHAKQLLDLDI 137 (262)
T ss_pred CCeEEEEcCCc--hHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHH-HHHhhcC------------CCEEEeehhhhccC
Confidence 36899999999 667888888766999999999999888764322 1111111 122222222 21 2
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+.-|+||.=...+ .+.++.+.+.++++.++++.+.+
T Consensus 138 ~~fDVIIvDs~~~----~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 138 KKYDLIICLQEPD----IHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred CcCCEEEEcCCCC----hHHHHHHHHhcCCCcEEEECCCC
Confidence 4679888653322 35667788889999888865543
No 484
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.39 E-value=0.22 Score=50.07 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=30.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEY 343 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~ 343 (539)
||.|||+|.+|..+++.|+..|+ +++++|.+.-.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTID 35 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcc
Confidence 58999999999999999999997 89999976543
No 485
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.36 E-value=0.15 Score=55.00 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
No 486
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.35 E-value=1.3 Score=45.56 Aligned_cols=176 Identities=12% Similarity=0.086 Sum_probs=94.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc---ccCCc-
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK---GVLDY- 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~- 382 (539)
|++|-|+|.|..+-.+|..|.+.+. +|=++.|...+.+...+.+.+.- ..++-. ..-+.-....+... +..++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~-~~~~v~-vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSD-GLFEVS-VQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCC-CEEEEe-ecchhhhhhcCeEEhhHhhcCHH
Confidence 5689999999999999999988765 79899997777666655432210 000000 00000011112222 12234
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhC--CCCe-EEEecC--CCCChHHHhhccCCCCcEEEec-------cCCC-
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKAC--PPHC-ILATNT--STIDLNIVGEKTSSQDRIIGAH-------FFSP- 449 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~--~~~~-ii~s~t--s~~~~~~i~~~~~~~~r~vg~h-------~~~p- 449 (539)
+...+=|.+|.|+|.|. -..++++|.... .-.+ +++|.+ |...+..+.........++... |.++
T Consensus 79 ~i~g~WdtlILavtaDA--Y~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 79 EIEGEWDTLILAVTADA--YLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred HhcccccEEEEEechHH--HHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 33456799999999665 457776653321 1233 444433 2333443333333222344332 1221
Q ss_pred -CCC-C-Cee---eeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 450 -AHV-M-PLL---EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 450 -~~~-~-~~v---ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
++. . ..+ .-++....+...++++..+++.+|-..+.+.
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 110 0 000 1223335567788999999999998888774
No 487
>PRK06196 oxidoreductase; Provisional
Probab=93.33 E-value=0.24 Score=50.13 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|.|+ |.+|..++..|++.|++|++.+|+++..+...+.
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~ 69 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG 69 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 46888886 8899999999999999999999998877665444
No 488
>PRK07236 hypothetical protein; Provisional
Probab=93.32 E-value=0.074 Score=55.55 Aligned_cols=35 Identities=26% Similarity=0.092 Sum_probs=32.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
..+|.|||+|.-|...|..|+++|++|+++++++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999998864
No 489
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.32 E-value=0.28 Score=49.35 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+++.|.|.|..|..+|..+...|-+|.+++.+|-.+-++ .++.+.+..-.++...+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 467888999999999999999999999999998653332 11334444333778889
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
|++|.+....--+..+ -...+++++|++ |..
T Consensus 266 DifiT~TGnkdVi~~e----h~~~MkDgaIl~-N~G 296 (420)
T COG0499 266 DIFVTATGNKDVIRKE----HFEKMKDGAILA-NAG 296 (420)
T ss_pred CEEEEccCCcCccCHH----HHHhccCCeEEe-ccc
Confidence 9999988754433333 334567888775 443
No 490
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.31 E-value=0.062 Score=54.74 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
+|.|||+|.-|..+|..|+++|++|+++|+++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 6999999999999999999999999999997653
No 491
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.28 E-value=0.15 Score=52.07 Aligned_cols=143 Identities=19% Similarity=0.164 Sum_probs=75.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeE---EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Ccc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYV---VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS 383 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V---~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 383 (539)
.||+|||+ |..|..+.+.|.++||++ ..+.++.+.-+... . .+ ..+...+ +..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----------~-~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----------F-KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----------e-CC-----------ceeEEeeCCHH
Confidence 58999996 999999999999988864 55654433211110 0 00 0111111 113
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCe--eeeecC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL--LEIVRT 461 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~--vei~~~ 461 (539)
.+.++|+||.|+|.. .-+++..++ +..++.|++.++...... . .| .++.-.++..+... -.++..
T Consensus 60 ~~~~vDvVf~A~g~g--~s~~~~~~~---~~~G~~VIDlS~~~R~~~-~----~p---~~lpevn~~~i~~~~~~~iVan 126 (334)
T PRK14874 60 DFSGVDIALFSAGGS--VSKKYAPKA---AAAGAVVIDNSSAFRMDP-D----VP---LVVPEVNPEALAEHRKKGIIAN 126 (334)
T ss_pred HHcCCCEEEECCChH--HHHHHHHHH---HhCCCEEEECCchhhcCC-C----CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence 457899999999843 333444433 345777888777654332 0 11 13322232221111 025555
Q ss_pred CCCcHHH-HHHHHHHHHHcCceeEEE
Q 009256 462 ERTSAQV-ILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 462 ~~t~~e~-~~~~~~l~~~lg~~~v~v 486 (539)
+.+.... .-.+.+|.+..+-..+.+
T Consensus 127 p~C~~t~~~l~l~pL~~~~~i~~i~v 152 (334)
T PRK14874 127 PNCSTIQMVVALKPLHDAAGIKRVVV 152 (334)
T ss_pred ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence 5555444 334566666666544443
No 492
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=93.22 E-value=0.22 Score=48.67 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=36.1
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
+|.|.|+ |.+|.+++..|++.|++|++.+++++.++...+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 6888885 88999999999999999999999998877665544
No 493
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.19 E-value=0.26 Score=48.64 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=51.6
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+ ..|.++|..|.++|..|+++......+. +.++.
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~-------------------------------------~~~~~ 200 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLK-------------------------------------AHTKK 200 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 489999987 7799999999999999998753211111 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
||+||.++.-.- ++. .+.+++++++++...
T Consensus 201 ADIvV~AvGkp~-----~i~--~~~vk~gavvIDvGi 230 (281)
T PRK14183 201 ADIVIVGVGKPN-----LIT--EDMVKEGAIVIDIGI 230 (281)
T ss_pred CCEEEEecCccc-----ccC--HHHcCCCcEEEEeec
Confidence 999999996222 222 246789998886553
No 494
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.19 Score=48.99 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+ |.+|..++..|+++|++|+++++++...+...+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 57899987 999999999999999999999999876655433
No 495
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.18 E-value=1 Score=43.03 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=34.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|.|+ |.+|..++..|+++|++|++++++++..+...
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 57999985 99999999999999999999999987765543
No 496
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=93.16 E-value=2.1 Score=41.71 Aligned_cols=179 Identities=17% Similarity=0.189 Sum_probs=99.7
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 307 GVRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 307 ~~~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
..-||+|+|+ |-+|.++...|..+-. ++.+||+.... .... +.+.++.. ...........+
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~--GVaa----------DlSHI~T~---s~V~g~~g~~~L~ 91 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTP--GVAA----------DLSHINTN---SSVVGFTGADGLE 91 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCC--cccc----------cccccCCC---CceeccCChhHHH
Confidence 3458999995 9999999998876543 78899987321 0000 01111100 000011112233
Q ss_pred cCCCCcCEEEEcc--cC------------ChhHHHHHHHHHHHhCCCCeE-EEecC--CCCChH-HHhhc--cCCCCcEE
Q 009256 383 SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCI-LATNT--STIDLN-IVGEK--TSSQDRII 442 (539)
Q Consensus 383 ~~~~~aDlVi~av--pe------------~~~~~~~~~~~l~~~~~~~~i-i~s~t--s~~~~~-~i~~~--~~~~~r~v 442 (539)
++++++|+||+-. |- +..+.+.+...+.+.++.-.+ ++||. |++|+. ++... ...|.++.
T Consensus 92 ~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklf 171 (345)
T KOG1494|consen 92 NALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLF 171 (345)
T ss_pred HHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCcccee
Confidence 6789999999653 32 334555555667777765443 33443 344543 33222 33566777
Q ss_pred Eecc---------------CCCCCCCCeeeeecC----------------CCCcHHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 443 GAHF---------------FSPAHVMPLLEIVRT----------------ERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 443 g~h~---------------~~p~~~~~~vei~~~----------------~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
|.-- .+| ....-+-+++| -..+++.++.+..-.+.-|-+++..+.+.|
T Consensus 172 GVTtLDvVRA~tFv~~~~~~~p-~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaG 250 (345)
T KOG1494|consen 172 GVTTLDVVRANTFVAEVLNLDP-AEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAG 250 (345)
T ss_pred ceehhhhhhHHHHHHHHhCCCc-hhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCC
Confidence 7642 122 11011112222 123667777777777888888888888888
Q ss_pred chhhcchHHH
Q 009256 492 FAVNRAFFPY 501 (539)
Q Consensus 492 ~v~nrl~~~~ 501 (539)
.....|-++-
T Consensus 251 SATLSMAyAg 260 (345)
T KOG1494|consen 251 SATLSMAYAG 260 (345)
T ss_pred chhhhHHHHH
Confidence 8777775543
No 497
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.16 E-value=0.16 Score=49.51 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=35.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
+++.|.|+ |.+|..++..|++.|++|++++++++..+...+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 36888886 899999999999999999999999887766544
No 498
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.16 E-value=0.36 Score=51.68 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
++|+|+|.|.-|.++|..|.+.|++|+++|.++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4899999999999999999999999999998753
No 499
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.15 E-value=0.18 Score=48.94 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~ 344 (539)
.+|.|+|+|-+|+.++..|+..|. +++++|.+.-..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 479999999999999999999997 899999875443
No 500
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.08 E-value=0.075 Score=55.57 Aligned_cols=34 Identities=35% Similarity=0.419 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
.+|.|||+|..|..+|..|++.|++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 4799999999999999999999999999998865
Done!