BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009257
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2Z|A Chain A, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A2Z|B Chain B, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A2Z|C Chain C, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A2Z|D Chain D, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A30|A Chain A, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
pdb|2A30|B Chain B, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
pdb|2A30|C Chain C, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
pdb|2A30|D Chain D, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
Length = 248
Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 112/183 (61%), Gaps = 12/183 (6%)
Query: 226 VEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAY 285
+EGNI+ GK+TF+ N +L + E+VPEP+ +W +V N+L Y+ PER+++
Sbjct: 29 IEGNIAAGKSTFV----NILKQLCEDWEVVPEPVARWCNVQST--NVLQMMYEKPERWSF 82
Query: 286 TFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISI 340
TFQ Y ++R+ + S G KP+ ERSV+SDR +F ++E++ MNE E +I
Sbjct: 83 TFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTI 142
Query: 341 YDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHEN 399
Y W D + + L DG IYL+A+P+TC R+ LR R EE G+ L+YL LH KHE+
Sbjct: 143 YQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHES 202
Query: 400 WLF 402
WL
Sbjct: 203 WLL 205
>pdb|2ZI3|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
pdb|2ZI3|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
pdb|2ZI9|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With
Cladribine+adp
pdb|2ZI9|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With
Cladribine+adp
Length = 279
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 114/196 (58%), Gaps = 23/196 (11%)
Query: 226 VEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV--GPDHF-----------NI 272
+EGNI+ GK+TF+ N +L + E+VPEP+ +W +V D F N+
Sbjct: 45 IEGNIAAGKSTFV----NILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMSQKNGGNV 100
Query: 273 LGAYYDAPERYAYTFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRAV 327
L Y+ PER+++TFQ Y ++R+ + S G KP+ ERSV+SDR +F +
Sbjct: 101 LQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL 160
Query: 328 HEAKYMNEMEISIYDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVS 386
+E++ MNE E +IY W D + + L DG IYL+A+P+TC R+ LR R EE G+
Sbjct: 161 YESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIP 220
Query: 387 LDYLRSLHEKHENWLF 402
L+YL LH KHE+WL
Sbjct: 221 LEYLEKLHYKHESWLL 236
>pdb|2ZI4|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+adp
pdb|2ZI5|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|B Chain B, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|C Chain C, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|D Chain D, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI6|A Chain A, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|B Chain B, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|C Chain C, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|D Chain D, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI7|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dg+udp
pdb|2ZI7|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dg+udp
pdb|2ZIA|A Chain A, C4s Dck Variant Of Dck In Complex With Cladribine+udp
pdb|2ZIA|B Chain B, C4s Dck Variant Of Dck In Complex With Cladribine+udp
pdb|3MJR|A Chain A, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|B Chain B, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|C Chain C, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|D Chain D, Human Dck Complex With Acyclic Nucleoside
pdb|3KFX|A Chain A, Human Dck Complex With 5-Me Dc And Adp
pdb|3KFX|B Chain B, Human Dck Complex With 5-Me Dc And Adp
Length = 279
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 114/197 (57%), Gaps = 23/197 (11%)
Query: 225 CVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV--GPDHF-----------N 271
+EGNI+ GK+TF+ N +L + E+VPEP+ +W +V D F N
Sbjct: 44 SIEGNIAAGKSTFV----NILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMSQKNGGN 99
Query: 272 ILGAYYDAPERYAYTFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRA 326
+L Y+ PER+++TFQ Y ++R+ + S G KP+ ERSV+SDR +F
Sbjct: 100 VLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASN 159
Query: 327 VHEAKYMNEMEISIYDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGV 385
++E++ MNE E +IY W D + + L DG IYL+A+P+TC R+ LR R EE G+
Sbjct: 160 LYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGI 219
Query: 386 SLDYLRSLHEKHENWLF 402
L+YL LH KHE+WL
Sbjct: 220 PLEYLEKLHYKHESWLL 236
>pdb|2NO9|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
Troxacitabine And Adp.
pdb|2NO9|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
Troxacitabine And Adp.
pdb|2NOA|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
Lamivudine And Adp.
pdb|2NOA|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
Lamivudine And Adp.
pdb|2NO0|A Chain A, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
pdb|2NO0|B Chain B, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
pdb|2NO1|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dc+adp
pdb|2NO1|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dc+adp
pdb|2NO6|A Chain A, C4s Dck Variant Of Dck In Complex With Ftc+adp
pdb|2NO6|B Chain B, C4s Dck Variant Of Dck In Complex With Ftc+adp
pdb|2NO7|A Chain A, C4s Dck Variant Of Dck In Complex With L-dc+adp
pdb|2NO7|B Chain B, C4s Dck Variant Of Dck In Complex With L-dc+adp
Length = 280
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 114/197 (57%), Gaps = 23/197 (11%)
Query: 225 CVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV--GPDHF-----------N 271
+EGNI+ GK+TF+ N +L + E+VPEP+ +W +V D F N
Sbjct: 45 SIEGNIAAGKSTFV----NILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMSQKNGGN 100
Query: 272 ILGAYYDAPERYAYTFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRA 326
+L Y+ PER+++TFQ Y ++R+ + S G KP+ ERSV+SDR +F
Sbjct: 101 VLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASN 160
Query: 327 VHEAKYMNEMEISIYDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGV 385
++E++ MNE E +IY W D + + L DG IYL+A+P+TC R+ LR R EE G+
Sbjct: 161 LYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGI 220
Query: 386 SLDYLRSLHEKHENWLF 402
L+YL LH KHE+WL
Sbjct: 221 PLEYLEKLHYKHESWLL 237
>pdb|3QEJ|A Chain A, S74e-Dck Mutant In Complex With Udp
pdb|3QEJ|B Chain B, S74e-Dck Mutant In Complex With Udp
pdb|3QEN|A Chain A, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
pdb|3QEN|B Chain B, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
Length = 279
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 114/197 (57%), Gaps = 23/197 (11%)
Query: 225 CVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV--GPDHF-----------N 271
+EGNI+ GK+TF+ + +L + E+VPEP+ +W +V D F N
Sbjct: 44 SIEGNIAAGKSTFVNILK----QLSEDWEVVPEPVARWSNVQSTQDEFEELTMEQKNGGN 99
Query: 272 ILGAYYDAPERYAYTFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRA 326
+L Y+ PER+++TFQ Y ++R+ + S G KP+ ERSV+SDR +F
Sbjct: 100 VLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASN 159
Query: 327 VHEAKYMNEMEISIYDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGV 385
++E++ MNE E +IY W D + + L DG IYL+A+P+TC R+ LR R EE G+
Sbjct: 160 LYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGI 219
Query: 386 SLDYLRSLHEKHENWLF 402
L+YL LH KHE+WL
Sbjct: 220 PLEYLEKLHYKHESWLL 236
>pdb|1P5Z|B Chain B, Structure Of Human Dck Complexed With Cytarabine And
Adp-Mg
pdb|1P60|A Chain A, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P60|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P61|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, P 43 21 2 Space Group
pdb|1P62|B Chain B, Structure Of Human Dck Complexed With Gemcitabine And
Adp-Mg
pdb|2A7Q|A Chain A, Crystal Structure Of Human Dck Complexed With Clofarabine
And Adp
Length = 263
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 114/196 (58%), Gaps = 23/196 (11%)
Query: 226 VEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV--GPDHF-----------NI 272
+EGNI+ GK+TF+ N +L + E+VPEP+ +W +V D F N+
Sbjct: 29 IEGNIAAGKSTFV----NILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 84
Query: 273 LGAYYDAPERYAYTFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRAV 327
L Y+ PER+++TFQ Y ++R+ + S G KP+ ERSV+SDR +F +
Sbjct: 85 LQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL 144
Query: 328 HEAKYMNEMEISIYDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVS 386
+E++ MNE E +IY W D + + L DG IYL+A+P+TC R+ LR R EE G+
Sbjct: 145 YESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIP 204
Query: 387 LDYLRSLHEKHENWLF 402
L+YL LH KHE+WL
Sbjct: 205 LEYLEKLHYKHESWLL 220
>pdb|2QRN|A Chain A, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|B Chain B, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|C Chain C, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|D Chain D, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRO|A Chain A, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|B Chain B, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|C Chain C, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|D Chain D, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
Length = 280
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 114/196 (58%), Gaps = 23/196 (11%)
Query: 226 VEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV--GPDHF-----------NI 272
+EGNI+ GK+TF+ N +L + E+VPEP+ +W +V D F N+
Sbjct: 46 IEGNIAAGKSTFV----NILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 101
Query: 273 LGAYYDAPERYAYTFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRAV 327
L Y+ PER+++TFQ Y ++R+ + S G KP+ ERSV+SDR +F +
Sbjct: 102 LQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL 161
Query: 328 HEAKYMNEMEISIYDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVS 386
+E++ MNE E +IY W D + + L DG IYL+A+P+TC R+ LR R EE G+
Sbjct: 162 YESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIP 221
Query: 387 LDYLRSLHEKHENWLF 402
L+YL LH KHE+WL
Sbjct: 222 LEYLEKLHYKHESWLL 237
>pdb|3IPX|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With Adp And An Inhibitor
pdb|3IPY|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
pdb|3IPY|B Chain B, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
Length = 241
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 23/196 (11%)
Query: 226 VEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV--GPDHF-----------NI 272
+EGNI+ GK+TF+ + +L + E+VPEP+ +W +V D F N+
Sbjct: 7 IEGNIAAGKSTFVNILK----QLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 62
Query: 273 LGAYYDAPERYAYTFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRAV 327
L Y+ PER+++TFQ Y ++R+ + S G KP+ ERSV+SDR +F +
Sbjct: 63 LQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL 122
Query: 328 HEAKYMNEMEISIYDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVS 386
+E++ MNE E +IY W D + + L DG IYL+A+P+TC R+ LR R EE G+
Sbjct: 123 YESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIP 182
Query: 387 LDYLRSLHEKHENWLF 402
L+YL LH KHE+WL
Sbjct: 183 LEYLEKLHYKHESWLL 198
>pdb|3QEO|A Chain A, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
pdb|3QEO|B Chain B, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
Length = 279
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 112/196 (57%), Gaps = 23/196 (11%)
Query: 226 VEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV--GPDHF-----------NI 272
+EGNI+ GK+TF+ + +L + E+VPEP+ +W +V D F N+
Sbjct: 45 IEGNIAAGKSTFVNILK----QLSEDWEVVPEPVARWSNVQSTQDEFEELTMEQKNGGNV 100
Query: 273 LGAYYDAPERYAYTFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRAV 327
L Y+ PER+++TFQ Y ++ + + S G KP+ ERSV+S R +F +
Sbjct: 101 LQMMYEKPERWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIFASNL 160
Query: 328 HEAKYMNEMEISIYDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVS 386
+E++ MNE E +IY W D + + L DG IYL+A+P+TC R+ LR R EE G+
Sbjct: 161 YESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIP 220
Query: 387 LDYLRSLHEKHENWLF 402
L+YL LH KHE+WL
Sbjct: 221 LEYLEKLHYKHESWLL 236
>pdb|3HP1|A Chain A, Crystal Structure Of Human Dck R104mD133A IN COMPLEX WITH
L-Dt And Adp
Length = 280
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 112/196 (57%), Gaps = 23/196 (11%)
Query: 226 VEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV--GPDHF-----------NI 272
+EGNI+ GK+TF+ N +L + E+VPEP+ +W +V D F N+
Sbjct: 46 IEGNIAAGKSTFV----NILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 101
Query: 273 LGAYYDAPERYAYTFQNYVFVTRVMQERESSGGI-----KPLRLMERSVFSDRMVFVRAV 327
L Y+ PER+++TFQ Y ++ + + S G KP+ ERSV+S R +F +
Sbjct: 102 LQMMYEKPERWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIFASNL 161
Query: 328 HEAKYMNEMEISIYDSWFDPVVSVL-PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVS 386
+E++ MNE E +IY W D + + L DG IYL+A+P+TC R+ LR R EE G+
Sbjct: 162 YESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIP 221
Query: 387 LDYLRSLHEKHENWLF 402
L+YL LH KHE+WL
Sbjct: 222 LEYLEKLHYKHESWLL 237
>pdb|2OCP|A Chain A, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|B Chain B, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|C Chain C, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|D Chain D, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|E Chain E, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|F Chain F, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|G Chain G, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|H Chain H, Crystal Structure Of Human Deoxyguanosine Kinase
Length = 241
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 125/266 (46%), Gaps = 54/266 (20%)
Query: 226 VEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDV----------GPDHFNILGA 275
+EGNI+VGK+TF++ + E + EP+ WQ++ N+L
Sbjct: 7 IEGNIAVGKSTFVKLLTKTYPEWH----VATEPVATWQNIQAAGNQKACTAQSLGNLLDM 62
Query: 276 YYDAPERYAYTFQNYVFVTRVMQERESS-----GGIKPLRLMERSVFSDRMVFVRAVHEA 330
Y P R++YTFQ + F++R+ + E KP+++ ERSV+SDR +F + + E
Sbjct: 63 MYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFEN 122
Query: 331 KYMNEMEISIYDSWFDPVVSVLPGLIP-DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDY 389
++++E IY W ++ I GFIYL+ASP C KR+ R R EE G+ L Y
Sbjct: 123 GSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAY 182
Query: 390 LRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSSIQKVP 449
L LH +HE WL +H LH + ++ +P
Sbjct: 183 LEQLHGQHEAWL-----------------IHKTTKLHFE---------------ALMNIP 210
Query: 450 ALVLDCEPNIDFSRDIDLKRQYARQV 475
LVLD N DFS ++ + R+V
Sbjct: 211 VLVLDV--NDDFSEEVTKQEDLMREV 234
>pdb|1OT3|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|E Chain E, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|F Chain F, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|G Chain G, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|H Chain H, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|2VP0|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP0|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
Length = 250
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 103/180 (57%), Gaps = 9/180 (5%)
Query: 223 TFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPER 282
T +EGNI GKTT+L N + ++ + ++ EP++KW++V + N+L Y P++
Sbjct: 22 TVLIEGNIGSGKTTYL----NHFEKYKNDICLLTEPVEKWRNV--NGVNLLELMYKDPKK 75
Query: 283 YAYTFQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYD 342
+A FQ+YV +T M + ++ K L++MERS+FS R FV + + + + +
Sbjct: 76 WAMPFQSYVTLT--MLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLE 133
Query: 343 SWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLF 402
W+ + + + D IYLR SP+ ++R+ R R+EE V L YL+ LHE HE+WL
Sbjct: 134 EWYKFIEESI-HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLI 192
>pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1J90|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1OE0|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|2JJ8|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VPP|A Chain A, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
pdb|2VPP|B Chain B, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
Length = 230
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 103/181 (56%), Gaps = 9/181 (4%)
Query: 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE 281
T +EGNI GKTT+L N + ++ + ++ EP++KW++V + N+L Y P+
Sbjct: 21 FTVLIEGNIGSGKTTYL----NHFEKYKNDICLLTEPVEKWRNV--NGVNLLELMYKDPK 74
Query: 282 RYAYTFQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIY 341
++A FQ+YV +T M + ++ K L++MERS+FS R FV + + + +
Sbjct: 75 KWAMPFQSYVTLT--MLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTL 132
Query: 342 DSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWL 401
+ W+ + + + D IYLR SP+ ++R+ R R+EE V L YL+ LHE HE+WL
Sbjct: 133 EEWYKFIEESI-HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWL 191
Query: 402 F 402
Sbjct: 192 I 192
>pdb|2JCS|A Chain A, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
pdb|2JCS|B Chain B, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
Length = 230
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 103/181 (56%), Gaps = 9/181 (4%)
Query: 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE 281
T +EGNI GKTT+L N + ++ + ++ +P++KW++V + N+L Y P+
Sbjct: 21 FTVLIEGNIGSGKTTYL----NHFEKYKNDICLLTDPVEKWRNV--NGVNLLELMYKDPK 74
Query: 282 RYAYTFQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIY 341
++A FQ+YV +T M + ++ K L++MERS+FS R FV + + + +
Sbjct: 75 KWAMPFQSYVTLT--MLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTL 132
Query: 342 DSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWL 401
+ W+ + + + D IYLR SP+ ++R+ R R+EE V L YL+ LHE HE+WL
Sbjct: 133 EEWYKFIEESI-HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWL 191
Query: 402 F 402
Sbjct: 192 I 192
>pdb|1ZMX|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|G Chain G, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|H Chain H, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|E Chain E, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|F Chain F, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZM7|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
Length = 230
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 103/181 (56%), Gaps = 9/181 (4%)
Query: 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE 281
T +EGNI GKTT+L N + ++ + ++ EP++KW++V + ++L Y P+
Sbjct: 21 FTVLIEGNIGSGKTTYL----NHFEKYKNDICLLTEPVEKWRNV--NGVDLLELMYKDPK 74
Query: 282 RYAYTFQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIY 341
++A FQ+YV +T M + ++ K L++MERS+FS R FV + + + +
Sbjct: 75 KWAMPFQSYVTLT--MLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTL 132
Query: 342 DSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWL 401
+ W+ + + + D IYLR SP+ ++R+ R R+EE V L YL+ LHE HE+WL
Sbjct: 133 EEWYKFIEESI-HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWL 191
Query: 402 F 402
Sbjct: 192 I 192
>pdb|2JAQ|A Chain A, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAQ|B Chain B, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAT|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
pdb|2JAT|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
Length = 205
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 39/197 (19%)
Query: 225 CVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYA 284
+ G + GK+T I+ + EI EP+++ P YY ++
Sbjct: 4 AIFGTVGAGKSTISAEISKKLG-----YEIFKEPVEE----NP----YFEQYYKDLKKTV 50
Query: 285 YTFQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRM----VFVRAVHEAKYMNEMEISI 340
+ Q Y+ R S +K + +E +F + +F++ ++ +++ + +
Sbjct: 51 FKMQIYMLTAR-------SKQLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNT 103
Query: 341 YDSWFDPVVSVLPGL-IP------DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSL 393
Y +++ VV L L IP D IYLR S T R+ R R+EE + +Y +L
Sbjct: 104 YIDFYNNVV--LENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETL 161
Query: 394 HEKHENWL------FPF 404
++ +E + FPF
Sbjct: 162 NKNYEEFYKQNVYDFPF 178
>pdb|2JAS|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|C Chain C, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|D Chain D, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|E Chain E, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|F Chain F, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
Length = 206
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 35/195 (17%)
Query: 225 CVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYA 284
+ G + GK+T I+ + EI EP+++ P YY ++
Sbjct: 5 AIFGTVGAGKSTISAEISKKLG-----YEIFKEPVEE----NP----YFEQYYKDLKKTV 51
Query: 285 YTFQNYVFVTRVMQERESSGGIKPLR--LMERSVFSDRMVFVRAVHEAKYMNEMEISIYD 342
+ Q Y+ R Q +++ K L + +R++ D +F++ ++ +++ + + Y
Sbjct: 52 FKMQIYMLTARSKQLKQA----KNLENIIFDRTLLEDP-IFMKVNYDLNNVDQTDYNTYI 106
Query: 343 SWFDPVVSVLPGL-IP------DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHE 395
+++ VV L L IP D IYLR S T R+ R R+EE + +Y +L++
Sbjct: 107 DFYNNVV--LENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNK 164
Query: 396 KHENWL------FPF 404
+E + FPF
Sbjct: 165 NYEEFYKQNVYDFPF 179
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 187 IHKNHAESITTF--IKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244
I N E +T IK+ + EELK +D + + + G +VGK+T L R+ NE
Sbjct: 209 IETNTGEVVTRLERIKEKLTEELK--KADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNE 266
Query: 245 TLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQER 300
R +V +P +DV + I G + + + V R+ ER
Sbjct: 267 D---RAIVTDIP---GTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIER 316
>pdb|3EGQ|A Chain A, Crystal Structure Of A Tetr-Family Transcriptional
Regulator (Af_1817) From Archaeoglobus Fulgidus At 2.55
A Resolution
pdb|3EGQ|B Chain B, Crystal Structure Of A Tetr-Family Transcriptional
Regulator (Af_1817) From Archaeoglobus Fulgidus At 2.55
A Resolution
Length = 170
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 144 PRNLRKLVDNGIGDVAELKQLYKDKFWEASQKMIEYLQSSVG 185
PR++ ++VD GIG +AE ++ + + SQ IE L+ G
Sbjct: 69 PRSVEEVVDYGIGFIAERREFIEFXXYALSQVRIEELERXFG 110
>pdb|3UXO|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
pdb|3UXO|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
pdb|3UXP|A Chain A, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
pdb|3UXP|B Chain B, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
Length = 335
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 100 LTRVTGIGPSAARKLVDEGIKTLEDLRK 127
>pdb|2BPF|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
pdb|2BPG|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
pdb|2BPG|B Chain B, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
pdb|1HUO|A Chain A, Crystal Structure Of Dna Polymerase Beta Complexed With
Dna And Cr-Tmppcp
pdb|1HUO|B Chain B, Crystal Structure Of Dna Polymerase Beta Complexed With
Dna And Cr-Tmppcp
pdb|1HUZ|A Chain A, Crystal Structure Of Dna Polymerase Complexed With Dna And
Cr-Pcp
pdb|1HUZ|B Chain B, Crystal Structure Of Dna Polymerase Complexed With Dna And
Cr-Pcp
pdb|1BPD|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
pdb|3UXN|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta, Wild Type
Apoenzyme
pdb|3UXN|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta, Wild Type
Apoenzyme
Length = 335
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 100 LTRVTGIGPSAARKLVDEGIKTLEDLRK 127
>pdb|3V72|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator
E295k: Enzyme- Dsdna
Length = 335
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 100 LTRVTGIGPSAARKLVDEGIKTLEDLRK 127
>pdb|1BPE|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta; Evidence For
A Common Polymerase Mechanism
Length = 335
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 100 LTRVTGIGPSAARKLVDEGIKTLEDLRK 127
>pdb|2VAN|A Chain A, Nucleotidyl Transfer Mechanism Of Mismatched Dntp
Incorporation By Dna Polymerase B By Structural And
Kinetic Analyses
Length = 245
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 10 LTRVTGIGPSAARKLVDEGIKTLEDLRK 37
>pdb|3V7K|A Chain A, Co-crystal Structure Of K72e Variant Of Rat Polymerase
Beta: Enzyme- Dna Binary Complex
pdb|3V7L|A Chain A, Apo Structure Of Rat Dna Polymerase Beta K72e Variant
Length = 340
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 105 LTRVTGIGPSAARKLVDEGIKTLEDLRK 132
>pdb|3V7J|A Chain A, Co-crystal Structure Of Wild Type Rat Polymerase Beta:
Enzyme-dna Binary Complex
Length = 340
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 105 LTRVTGIGPSAARKLVDEGIKTLEDLRK 132
>pdb|1RPL|A Chain A, 2.3 Angstroms Crystal Structure Of The Catalytic Domain Of
Dna Polymerase Beta
Length = 251
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 16 LTRVTGIGPSAARKLVDEGIKTLEDLRK 43
>pdb|1BPB|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
pdb|1NOM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (5 Millimolar)
pdb|1ZQU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Artificial Mother Liquor
pdb|1ZQV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cacl2 (150 Millimolar)
pdb|1ZQW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cscl (150 Millimolar)
pdb|1ZQX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Kcl (150 Millimolar)
pdb|1ZQY|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mgcl2 (50 Millimolar)
pdb|1ZQZ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (50 Millimolar)
pdb|2BPC|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
Length = 248
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 13 LTRVTGIGPSAARKLVDEGIKTLEDLRK 40
>pdb|3K75|D Chain D, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
pdb|3K75|E Chain E, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
Length = 252
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 11 LTRVTGIGPSAARKLVDEGIKTLEDLRK 38
>pdb|1JN3|A Chain A, Fidelity Properties And Structure Of M282l Mutator Mutant
Of Dna Polymerase: Subtle Structural Changes Influence
The Mechanism Of Nucleotide Discrimination
Length = 251
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163
L + G+GP RKLVD GI + +L++
Sbjct: 16 LTRVTGIGPSAARKLVDEGIKTLEDLRK 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,858,559
Number of Sequences: 62578
Number of extensions: 642571
Number of successful extensions: 1490
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 54
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)