Query 009257
Match_columns 539
No_of_seqs 274 out of 1451
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 22:21:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4235 Mitochondrial thymidin 100.0 3E-50 6.4E-55 386.4 16.6 222 220-482 22-243 (244)
2 COG1428 Deoxynucleoside kinase 100.0 2.5E-40 5.3E-45 321.8 20.1 205 221-483 4-214 (216)
3 cd02030 NDUO42 NADH:Ubiquinone 100.0 3.4E-31 7.3E-36 257.6 20.4 203 223-477 1-217 (219)
4 cd01673 dNK Deoxyribonucleosid 100.0 4.4E-31 9.4E-36 249.0 19.3 169 223-403 1-171 (193)
5 PF01712 dNK: Deoxynucleoside 100.0 1.7E-28 3.7E-33 225.8 8.7 143 287-475 1-145 (146)
6 KOG3877 NADH:ubiquinone oxidor 99.9 1.9E-24 4.2E-29 217.5 15.3 196 219-418 69-280 (393)
7 COG0125 Tmk Thymidylate kinase 99.9 2.2E-23 4.8E-28 203.7 19.6 168 219-404 1-177 (208)
8 PHA03132 thymidine kinase; Pro 99.9 1.8E-23 3.9E-28 229.3 16.5 168 220-400 256-445 (580)
9 PRK07933 thymidylate kinase; V 99.9 1.2E-22 2.6E-27 197.9 20.1 168 222-403 1-185 (213)
10 PRK13976 thymidylate kinase; P 99.9 3.9E-22 8.5E-27 194.4 19.5 162 222-404 1-169 (209)
11 PRK13973 thymidylate kinase; P 99.9 1.1E-20 2.5E-25 183.2 21.3 167 219-402 1-178 (213)
12 PRK00698 tmk thymidylate kinas 99.9 8.4E-21 1.8E-25 179.1 19.6 166 219-403 1-175 (205)
13 PLN02924 thymidylate kinase 99.9 2.8E-20 6E-25 182.9 20.0 163 216-401 11-177 (220)
14 cd01672 TMPK Thymidine monopho 99.8 2.5E-19 5.4E-24 166.5 20.2 165 222-403 1-173 (200)
15 TIGR00041 DTMP_kinase thymidyl 99.8 2.2E-19 4.8E-24 169.2 19.1 177 219-415 1-185 (195)
16 PRK13974 thymidylate kinase; P 99.8 2.8E-19 6.1E-24 173.4 19.9 166 219-401 1-179 (212)
17 PF02223 Thymidylate_kin: Thym 99.8 6.2E-19 1.3E-23 165.8 16.4 170 226-415 1-176 (186)
18 PRK13975 thymidylate kinase; P 99.8 3.3E-18 7.2E-23 161.3 19.9 155 221-402 2-157 (196)
19 PHA03136 thymidine kinase; Pro 99.8 3.1E-19 6.7E-24 187.2 12.7 176 220-404 35-238 (378)
20 PHA03138 thymidine kinase; Pro 99.8 3.4E-18 7.4E-23 177.3 13.3 178 219-404 10-231 (340)
21 PHA03134 thymidine kinase; Pro 99.5 4.4E-14 9.6E-19 146.8 13.0 173 220-403 12-209 (340)
22 PHA03135 thymidine kinase; Pro 99.5 3.6E-14 7.7E-19 147.7 9.4 174 220-403 9-205 (343)
23 KOG3327 Thymidylate kinase/ade 99.4 3.4E-12 7.3E-17 123.3 12.8 158 219-401 3-166 (208)
24 PF00693 Herpes_TK: Thymidine 99.3 2.8E-11 6E-16 123.4 12.7 163 228-401 1-189 (281)
25 PRK08233 hypothetical protein; 99.2 9.8E-10 2.1E-14 101.8 17.0 49 356-404 97-150 (182)
26 PHA03133 thymidine kinase; Pro 99.2 2.2E-10 4.8E-15 120.2 14.0 172 219-401 38-237 (368)
27 TIGR01359 UMP_CMP_kin_fam UMP- 99.0 1.4E-08 3.1E-13 94.9 17.1 46 355-400 102-148 (183)
28 PRK02496 adk adenylate kinase; 98.9 6.4E-08 1.4E-12 91.2 18.2 42 355-399 106-147 (184)
29 TIGR01360 aden_kin_iso1 adenyl 98.9 3.7E-08 8.1E-13 91.7 15.6 44 356-399 106-151 (188)
30 PRK04040 adenylate kinase; Pro 98.9 6.7E-08 1.4E-12 93.2 17.7 49 356-404 110-161 (188)
31 PRK14532 adenylate kinase; Pro 98.9 7.9E-08 1.7E-12 90.7 17.6 46 355-400 105-152 (188)
32 PRK06217 hypothetical protein; 98.9 3.8E-08 8.3E-13 93.2 15.1 27 222-249 2-28 (183)
33 PLN02200 adenylate kinase fami 98.9 1.1E-07 2.3E-12 94.8 18.2 84 356-487 145-230 (234)
34 TIGR03574 selen_PSTK L-seryl-t 98.8 1.6E-07 3.6E-12 93.0 17.3 41 356-400 95-135 (249)
35 PRK13808 adenylate kinase; Pro 98.8 1.7E-07 3.8E-12 98.2 15.8 27 222-249 1-27 (333)
36 PRK13949 shikimate kinase; Pro 98.8 1.5E-07 3.3E-12 89.0 13.7 49 357-405 94-145 (169)
37 PRK06762 hypothetical protein; 98.7 8E-08 1.7E-12 88.8 11.4 24 221-244 2-25 (166)
38 PRK14531 adenylate kinase; Pro 98.7 2.3E-07 5.1E-12 88.0 14.6 26 355-380 106-131 (183)
39 PRK14527 adenylate kinase; Pro 98.7 5.3E-07 1.2E-11 85.9 14.5 30 219-249 4-33 (191)
40 COG1936 Predicted nucleotide k 98.7 9E-08 2E-12 92.1 8.9 56 356-416 82-140 (180)
41 PRK05480 uridine/cytidine kina 98.6 2.8E-07 6.1E-12 88.7 11.5 78 356-480 125-207 (209)
42 PRK03839 putative kinase; Prov 98.6 9.6E-07 2.1E-11 83.0 14.4 27 222-249 1-27 (180)
43 COG4088 Predicted nucleotide k 98.6 5.6E-07 1.2E-11 89.2 13.2 137 222-399 2-140 (261)
44 PRK00131 aroK shikimate kinase 98.6 2.2E-06 4.7E-11 78.6 16.0 29 220-249 3-31 (175)
45 PF13671 AAA_33: AAA domain; P 98.5 8.5E-07 1.9E-11 79.1 11.0 27 356-382 97-123 (143)
46 PF13521 AAA_28: AAA domain; P 98.5 1.2E-06 2.6E-11 81.0 11.8 141 224-404 2-148 (163)
47 PRK14528 adenylate kinase; Pro 98.5 1.4E-06 3E-11 83.4 12.5 27 222-249 2-28 (186)
48 PRK14738 gmk guanylate kinase; 98.5 1.9E-06 4.2E-11 83.6 13.2 42 356-401 122-165 (206)
49 COG0572 Udk Uridine kinase [Nu 98.5 2E-07 4.3E-12 92.6 5.8 49 356-405 127-180 (218)
50 PRK14530 adenylate kinase; Pro 98.5 4E-06 8.6E-11 81.5 14.7 30 219-249 1-30 (215)
51 PRK08356 hypothetical protein; 98.5 5E-06 1.1E-10 79.7 15.0 38 358-395 116-154 (195)
52 PRK00279 adk adenylate kinase; 98.4 7.9E-06 1.7E-10 79.4 15.8 27 222-249 1-27 (215)
53 PRK08118 topology modulation p 98.4 5.1E-07 1.1E-11 85.3 7.2 27 222-249 2-28 (167)
54 PRK05541 adenylylsulfate kinas 98.4 4.5E-06 9.8E-11 78.2 13.3 27 218-244 4-30 (176)
55 PLN02842 nucleotide kinase 98.4 4.8E-06 1E-10 91.7 15.3 24 355-378 99-122 (505)
56 PRK13946 shikimate kinase; Pro 98.4 1.8E-05 3.9E-10 75.3 17.2 29 220-249 9-37 (184)
57 cd00464 SK Shikimate kinase (S 98.4 2.4E-05 5.2E-10 70.7 16.4 57 357-416 92-149 (154)
58 PF13238 AAA_18: AAA domain; P 98.4 7.4E-07 1.6E-11 77.3 6.0 21 224-244 1-21 (129)
59 PRK03731 aroL shikimate kinase 98.3 9.1E-06 2E-10 75.5 13.5 27 222-249 3-29 (171)
60 PRK04182 cytidylate kinase; Pr 98.3 1.8E-05 3.9E-10 73.1 15.4 27 222-249 1-27 (180)
61 cd01428 ADK Adenylate kinase ( 98.3 1.7E-05 3.8E-10 74.4 15.4 24 356-379 104-127 (194)
62 TIGR02173 cyt_kin_arch cytidyl 98.3 1.9E-05 4.1E-10 72.6 15.3 27 222-249 1-27 (171)
63 PTZ00301 uridine kinase; Provi 98.3 4.2E-06 9E-11 82.4 11.3 49 356-405 126-179 (210)
64 PRK14731 coaE dephospho-CoA ki 98.3 1.4E-05 3.1E-10 77.8 13.5 25 356-380 133-157 (208)
65 PRK00625 shikimate kinase; Pro 98.3 8.6E-06 1.9E-10 77.9 11.5 27 222-249 1-27 (173)
66 TIGR03708 poly_P_AMP_trns poly 98.2 2.9E-05 6.3E-10 85.5 16.6 150 219-403 38-199 (493)
67 PRK13947 shikimate kinase; Pro 98.2 3.5E-05 7.5E-10 71.4 14.2 26 223-249 3-28 (171)
68 TIGR02322 phosphon_PhnN phosph 98.2 6.1E-05 1.3E-09 70.5 15.5 24 221-244 1-24 (179)
69 PRK14734 coaE dephospho-CoA ki 98.2 1.7E-05 3.8E-10 77.1 12.0 22 222-243 2-23 (200)
70 PRK14529 adenylate kinase; Pro 98.2 1.6E-05 3.5E-10 79.2 11.9 28 222-250 1-28 (223)
71 TIGR00235 udk uridine kinase. 98.2 1.3E-05 2.8E-10 77.5 11.0 28 219-247 4-31 (207)
72 PRK10078 ribose 1,5-bisphospho 98.2 3.6E-05 7.8E-10 73.2 13.8 24 221-244 2-25 (186)
73 TIGR01313 therm_gnt_kin carboh 98.2 9.1E-05 2E-09 68.3 15.8 23 224-247 1-23 (163)
74 TIGR01351 adk adenylate kinase 98.2 8.6E-05 1.9E-09 71.9 16.3 23 356-378 103-125 (210)
75 cd00227 CPT Chloramphenicol (C 98.2 8.3E-05 1.8E-09 69.9 15.7 24 221-244 2-25 (175)
76 TIGR03707 PPK2_P_aer polyphosp 98.2 4.7E-05 1E-09 76.4 14.6 164 219-416 29-205 (230)
77 COG1102 Cmk Cytidylate kinase 98.1 2.5E-05 5.5E-10 74.9 11.7 27 222-249 1-27 (179)
78 PRK14730 coaE dephospho-CoA ki 98.1 3E-05 6.5E-10 75.2 12.1 27 222-249 2-28 (195)
79 PHA02530 pseT polynucleotide k 98.1 0.00015 3.3E-09 73.2 17.4 56 360-418 106-169 (300)
80 PRK07667 uridine kinase; Provi 98.1 9.1E-05 2E-09 71.2 14.9 45 356-404 138-182 (193)
81 PTZ00451 dephospho-CoA kinase; 98.1 3.2E-05 7E-10 78.1 12.0 27 222-249 2-28 (244)
82 PF00485 PRK: Phosphoribulokin 98.1 7.7E-07 1.7E-11 85.1 0.4 48 356-405 126-178 (194)
83 PRK05057 aroK shikimate kinase 98.1 0.00024 5.2E-09 67.4 17.3 29 220-249 3-31 (172)
84 PRK00081 coaE dephospho-CoA ki 98.1 3.4E-05 7.4E-10 74.3 11.5 26 222-249 3-28 (194)
85 PRK06547 hypothetical protein; 98.1 9.9E-05 2.2E-09 70.5 14.1 41 359-404 120-160 (172)
86 PRK01184 hypothetical protein; 98.0 0.00017 3.6E-09 68.0 15.2 24 357-380 104-127 (184)
87 cd02021 GntK Gluconate kinase 98.0 0.00017 3.7E-09 65.5 14.7 25 223-248 1-25 (150)
88 PRK14732 coaE dephospho-CoA ki 98.0 3.8E-05 8.3E-10 74.7 11.0 23 356-378 121-143 (196)
89 KOG3347 Predicted nucleotide k 98.0 6E-05 1.3E-09 71.7 11.7 48 352-399 88-138 (176)
90 TIGR03709 PPK2_rel_1 polyphosp 98.0 0.0001 2.2E-09 75.4 14.2 162 220-416 55-230 (264)
91 cd02020 CMPK Cytidine monophos 98.0 8.4E-05 1.8E-09 66.3 11.6 26 223-249 1-26 (147)
92 PRK13948 shikimate kinase; Pro 98.0 0.00045 9.7E-09 66.8 17.2 29 220-249 9-37 (182)
93 PLN02674 adenylate kinase 98.0 0.00021 4.5E-09 72.3 15.5 28 221-249 31-58 (244)
94 PRK03333 coaE dephospho-CoA ki 98.0 2.2E-05 4.8E-10 84.0 8.9 26 222-249 2-27 (395)
95 COG0237 CoaE Dephospho-CoA kin 98.0 8.6E-05 1.9E-09 73.0 12.2 27 221-249 2-28 (201)
96 PRK08154 anaerobic benzoate ca 98.0 0.00026 5.6E-09 73.3 16.2 30 219-249 131-160 (309)
97 PF01121 CoaE: Dephospho-CoA k 98.0 1.4E-05 3E-10 77.0 6.3 26 222-249 1-26 (180)
98 COG0703 AroK Shikimate kinase 98.0 0.00021 4.6E-09 69.0 14.3 28 221-249 2-29 (172)
99 cd02023 UMPK Uridine monophosp 98.0 1.7E-05 3.6E-10 75.7 6.7 49 356-405 118-171 (198)
100 PF01583 APS_kinase: Adenylyls 97.9 4.4E-05 9.5E-10 72.5 9.0 26 220-245 1-26 (156)
101 PRK06761 hypothetical protein; 97.9 0.00041 8.9E-09 71.6 16.8 30 219-249 1-30 (282)
102 PF08433 KTI12: Chromatin asso 97.9 0.00025 5.5E-09 72.5 15.0 137 223-400 3-140 (270)
103 PRK06696 uridine kinase; Valid 97.9 4.8E-05 1E-09 74.6 9.4 48 356-403 146-196 (223)
104 PRK13477 bifunctional pantoate 97.9 0.00012 2.5E-09 81.2 13.1 29 219-248 282-310 (512)
105 PRK15453 phosphoribulokinase; 97.9 3.2E-05 7E-10 79.9 8.0 48 356-405 146-198 (290)
106 PRK13951 bifunctional shikimat 97.9 0.0002 4.2E-09 78.9 14.6 27 222-249 1-27 (488)
107 TIGR00152 dephospho-CoA kinase 97.9 4.7E-05 1E-09 72.4 8.3 23 356-378 123-145 (188)
108 PTZ00088 adenylate kinase 1; P 97.9 7.6E-05 1.6E-09 74.5 10.0 30 219-249 4-33 (229)
109 PF03976 PPK2: Polyphosphate k 97.9 0.00022 4.7E-09 71.5 13.2 149 220-402 30-189 (228)
110 PLN02422 dephospho-CoA kinase 97.9 0.00017 3.7E-09 72.4 12.2 23 356-378 125-147 (232)
111 PRK09825 idnK D-gluconate kina 97.8 0.00082 1.8E-08 64.2 15.5 26 219-244 1-26 (176)
112 PRK07261 topology modulation p 97.8 8.6E-05 1.9E-09 70.3 8.5 26 222-248 1-26 (171)
113 cd02029 PRK_like Phosphoribulo 97.8 3.2E-05 7E-10 79.4 5.7 48 356-405 140-192 (277)
114 cd02022 DPCK Dephospho-coenzym 97.7 3.7E-05 7.9E-10 72.9 5.1 23 356-378 121-143 (179)
115 PLN02348 phosphoribulokinase 97.7 0.00034 7.4E-09 75.2 12.5 28 219-247 47-74 (395)
116 COG0529 CysC Adenylylsulfate k 97.7 0.00023 5.1E-09 69.4 10.1 31 219-250 21-51 (197)
117 PRK14526 adenylate kinase; Pro 97.7 0.0015 3.2E-08 64.5 16.0 27 222-249 1-27 (211)
118 cd02025 PanK Pantothenate kina 97.7 6.6E-05 1.4E-09 74.1 6.6 22 223-244 1-22 (220)
119 PRK00023 cmk cytidylate kinase 97.7 0.0013 2.7E-08 65.3 15.6 30 219-249 2-31 (225)
120 PRK12339 2-phosphoglycerate ki 97.7 0.00072 1.6E-08 66.1 13.5 29 219-248 1-29 (197)
121 COG0563 Adk Adenylate kinase a 97.6 0.0015 3.3E-08 62.9 14.6 27 222-249 1-27 (178)
122 PF00406 ADK: Adenylate kinase 97.6 0.00027 5.8E-09 64.8 8.4 22 355-376 101-122 (151)
123 COG3265 GntK Gluconate kinase 97.6 0.00053 1.1E-08 65.2 10.5 52 359-416 93-144 (161)
124 COG2019 AdkA Archaeal adenylat 97.6 0.0018 3.9E-08 62.8 14.0 26 219-244 1-27 (189)
125 PRK14733 coaE dephospho-CoA ki 97.6 0.00046 1E-08 68.0 10.3 29 220-249 5-33 (204)
126 TIGR03708 poly_P_AMP_trns poly 97.6 0.00097 2.1E-08 73.7 13.5 150 218-402 296-457 (493)
127 PRK09270 nucleoside triphospha 97.6 0.0037 8.1E-08 61.5 16.4 26 219-244 31-56 (229)
128 cd02024 NRK1 Nicotinamide ribo 97.5 5.2E-05 1.1E-09 73.6 3.2 22 223-244 1-22 (187)
129 PRK05416 glmZ(sRNA)-inactivati 97.5 0.0032 7E-08 65.2 16.5 23 221-243 6-28 (288)
130 PRK08099 bifunctional DNA-bind 97.5 0.00066 1.4E-08 73.1 11.2 30 219-249 217-246 (399)
131 TIGR00455 apsK adenylylsulfate 97.5 0.0025 5.4E-08 60.2 13.8 26 219-244 16-41 (184)
132 KOG3079 Uridylate kinase/adeny 97.5 0.0045 9.9E-08 60.7 15.7 27 218-244 5-31 (195)
133 PLN02318 phosphoribulokinase/u 97.5 9.9E-05 2.1E-09 83.0 4.2 49 356-405 176-229 (656)
134 PRK11545 gntK gluconate kinase 97.4 0.0076 1.7E-07 56.7 16.2 32 357-391 91-122 (163)
135 PF06414 Zeta_toxin: Zeta toxi 97.4 0.0012 2.6E-08 63.6 11.0 27 218-244 12-38 (199)
136 TIGR03575 selen_PSTK_euk L-ser 97.4 0.0051 1.1E-07 65.2 16.5 39 356-398 154-192 (340)
137 PLN02199 shikimate kinase 97.4 0.0094 2E-07 62.3 18.1 28 221-249 102-129 (303)
138 PLN02459 probable adenylate ki 97.4 0.001 2.2E-08 68.1 10.8 29 220-249 28-56 (261)
139 TIGR01526 nadR_NMN_Atrans nico 97.4 0.00093 2E-08 69.9 10.6 147 221-399 162-308 (325)
140 PRK12338 hypothetical protein; 97.4 0.0021 4.6E-08 67.5 13.1 30 219-249 2-31 (319)
141 PRK03846 adenylylsulfate kinas 97.4 0.0027 5.9E-08 61.1 12.8 26 219-244 22-47 (198)
142 PF01202 SKI: Shikimate kinase 97.3 0.0024 5.3E-08 59.4 11.4 22 358-379 86-107 (158)
143 COG0194 Gmk Guanylate kinase [ 97.3 0.0011 2.4E-08 64.9 9.3 25 220-244 3-27 (191)
144 TIGR00017 cmk cytidylate kinas 97.3 0.0012 2.7E-08 65.2 9.8 28 221-249 2-29 (217)
145 cd02027 APSK Adenosine 5'-phos 97.3 0.0032 6.9E-08 58.3 11.9 22 223-244 1-22 (149)
146 COG1072 CoaA Panthothenate kin 97.3 0.0036 7.8E-08 64.7 13.0 26 219-244 80-105 (283)
147 PF13207 AAA_17: AAA domain; P 97.3 0.00024 5.3E-09 61.8 3.9 26 223-249 1-26 (121)
148 PRK14021 bifunctional shikimat 97.3 0.0081 1.8E-07 67.1 16.5 30 219-249 4-33 (542)
149 cd02028 UMPK_like Uridine mono 97.2 0.00021 4.5E-09 68.3 3.3 24 223-247 1-24 (179)
150 cd02026 PRK Phosphoribulokinas 97.2 0.0017 3.7E-08 66.4 9.4 24 223-247 1-24 (273)
151 PRK07429 phosphoribulokinase; 97.2 0.003 6.6E-08 66.4 11.5 29 219-248 6-34 (327)
152 PRK14737 gmk guanylate kinase; 97.2 0.012 2.5E-07 57.0 14.5 25 220-244 3-27 (186)
153 TIGR00554 panK_bact pantothena 97.1 0.0053 1.2E-07 63.7 12.1 26 219-244 60-85 (290)
154 KOG3308 Uncharacterized protei 97.1 0.0019 4.1E-08 64.2 8.0 29 219-247 2-30 (225)
155 PRK00889 adenylylsulfate kinas 97.0 0.014 3E-07 54.7 13.1 25 220-244 3-27 (175)
156 KOG3354 Gluconate kinase [Carb 97.0 0.0069 1.5E-07 58.4 10.9 121 222-381 13-142 (191)
157 COG2326 Uncharacterized conser 97.0 0.0048 1E-07 63.1 10.3 164 219-416 72-248 (270)
158 PHA00729 NTP-binding motif con 97.0 0.0047 1E-07 62.1 10.0 27 356-382 118-144 (226)
159 PRK05439 pantothenate kinase; 97.0 0.0013 2.7E-08 68.9 6.2 26 219-244 84-109 (311)
160 PRK12337 2-phosphoglycerate ki 96.9 0.0084 1.8E-07 66.1 12.3 30 219-249 253-282 (475)
161 PRK04301 radA DNA repair and r 96.9 0.0015 3.2E-08 67.7 6.2 106 131-244 3-125 (317)
162 COG3911 Predicted ATPase [Gene 96.9 0.012 2.6E-07 56.4 11.2 147 222-400 10-160 (183)
163 TIGR01663 PNK-3'Pase polynucle 96.9 0.016 3.4E-07 64.8 13.8 26 219-244 367-392 (526)
164 COG3172 NadR Predicted ATPase/ 96.8 0.016 3.4E-07 56.2 11.6 145 222-405 9-156 (187)
165 smart00072 GuKc Guanylate kina 96.7 0.025 5.4E-07 53.9 12.2 24 221-244 2-25 (184)
166 PRK04220 2-phosphoglycerate ki 96.7 0.057 1.2E-06 56.6 15.8 30 219-249 90-119 (301)
167 PRK09518 bifunctional cytidyla 96.7 0.027 5.9E-07 64.8 14.3 27 222-249 2-28 (712)
168 TIGR02236 recomb_radA DNA repa 96.6 0.0032 6.9E-08 64.7 5.8 105 138-244 3-118 (310)
169 cd02019 NK Nucleoside/nucleoti 96.6 0.0019 4.1E-08 52.5 3.1 22 223-244 1-22 (69)
170 PF07931 CPT: Chloramphenicol 96.5 0.014 3.1E-07 56.3 9.1 24 221-244 1-24 (174)
171 PF00625 Guanylate_kin: Guanyl 96.5 0.08 1.7E-06 50.2 14.0 25 220-244 1-25 (183)
172 COG0283 Cmk Cytidylate kinase 96.5 0.0026 5.6E-08 63.6 4.0 28 221-249 4-31 (222)
173 PRK05506 bifunctional sulfate 96.4 0.027 5.8E-07 63.9 11.7 28 219-247 458-485 (632)
174 TIGR03263 guanyl_kin guanylate 96.2 0.0033 7.2E-08 58.7 3.1 24 221-244 1-24 (180)
175 PRK00300 gmk guanylate kinase; 96.2 0.004 8.7E-08 59.4 3.7 26 219-244 3-28 (205)
176 PRK11860 bifunctional 3-phosph 96.1 0.05 1.1E-06 62.2 12.2 28 221-249 442-469 (661)
177 PRK10416 signal recognition pa 95.9 0.025 5.4E-07 59.4 7.8 26 219-244 112-137 (318)
178 PRK05537 bifunctional sulfate 95.8 0.22 4.8E-06 56.3 15.4 29 219-248 390-418 (568)
179 TIGR00150 HI0065_YjeE ATPase, 95.8 0.01 2.2E-07 55.1 3.9 29 219-248 20-48 (133)
180 TIGR00064 ftsY signal recognit 95.7 0.044 9.6E-07 56.1 8.8 26 219-244 70-95 (272)
181 PF02367 UPF0079: Uncharacteri 95.6 0.014 3E-07 53.6 4.2 30 219-249 13-42 (123)
182 smart00382 AAA ATPases associa 95.6 0.012 2.6E-07 49.7 3.5 24 221-244 2-25 (148)
183 COG4639 Predicted kinase [Gene 95.6 0.053 1.1E-06 52.2 8.0 25 357-381 97-121 (168)
184 KOG3220 Similar to bacterial d 95.5 0.044 9.6E-07 54.7 7.5 26 222-249 2-27 (225)
185 PRK12269 bifunctional cytidyla 95.5 0.013 2.9E-07 68.9 4.4 31 218-249 31-61 (863)
186 PF03668 ATP_bind_2: P-loop AT 95.4 0.24 5.2E-06 51.6 12.8 21 223-243 3-23 (284)
187 PTZ00035 Rad51 protein; Provis 95.4 0.034 7.4E-07 58.7 6.8 30 134-163 23-52 (337)
188 COG3709 Uncharacterized compon 95.4 0.037 8E-07 53.8 6.3 35 220-255 4-38 (192)
189 PF00004 AAA: ATPase family as 95.4 0.017 3.6E-07 50.2 3.7 24 224-248 1-24 (132)
190 TIGR03499 FlhF flagellar biosy 95.2 0.066 1.4E-06 54.9 8.2 27 219-245 192-218 (282)
191 COG4619 ABC-type uncharacteriz 95.2 0.023 5E-07 55.8 4.4 25 219-243 27-51 (223)
192 KOG0635 Adenosine 5'-phosphosu 95.2 0.12 2.6E-06 50.0 9.1 29 219-247 29-57 (207)
193 cd00071 GMPK Guanosine monopho 95.1 0.016 3.6E-07 53.0 2.8 22 223-244 1-22 (137)
194 PRK14722 flhF flagellar biosyn 94.9 0.071 1.5E-06 57.4 7.6 27 219-245 135-161 (374)
195 PF00005 ABC_tran: ABC transpo 94.9 0.021 4.5E-07 50.8 3.0 25 220-244 10-34 (137)
196 cd04163 Era Era subfamily. Er 94.8 0.026 5.6E-07 49.7 3.4 24 220-243 2-25 (168)
197 PRK06995 flhF flagellar biosyn 94.8 0.077 1.7E-06 58.9 7.7 49 196-245 232-280 (484)
198 PLN03187 meiotic recombination 94.7 0.066 1.4E-06 57.0 6.7 97 134-243 31-148 (344)
199 COG1618 Predicted nucleotide k 94.6 0.036 7.8E-07 53.7 4.0 29 220-249 4-32 (179)
200 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.6 0.028 6.1E-07 54.2 3.4 25 219-243 28-52 (218)
201 PRK10646 ADP-binding protein; 94.6 0.036 7.9E-07 52.7 3.9 29 220-249 27-55 (153)
202 COG1136 SalX ABC-type antimicr 94.6 0.03 6.5E-07 56.4 3.5 25 219-243 29-53 (226)
203 cd03292 ABC_FtsE_transporter F 94.6 0.03 6.6E-07 53.8 3.4 25 219-243 25-49 (214)
204 COG1116 TauB ABC-type nitrate/ 94.5 0.03 6.5E-07 57.1 3.4 25 219-243 27-51 (248)
205 TIGR00960 3a0501s02 Type II (G 94.5 0.031 6.7E-07 54.0 3.4 25 219-243 27-51 (216)
206 TIGR01166 cbiO cobalt transpor 94.5 0.034 7.3E-07 52.8 3.5 25 219-243 16-40 (190)
207 TIGR02673 FtsE cell division A 94.5 0.032 7E-07 53.7 3.4 25 219-243 26-50 (214)
208 cd03225 ABC_cobalt_CbiO_domain 94.5 0.033 7.2E-07 53.5 3.5 25 219-243 25-49 (211)
209 TIGR02211 LolD_lipo_ex lipopro 94.4 0.034 7.3E-07 53.8 3.4 25 219-243 29-53 (221)
210 cd03269 ABC_putative_ATPase Th 94.4 0.035 7.7E-07 53.4 3.5 25 219-243 24-48 (210)
211 cd03229 ABC_Class3 This class 94.4 0.036 7.9E-07 52.3 3.5 25 219-243 24-48 (178)
212 PLN02840 tRNA dimethylallyltra 94.4 0.051 1.1E-06 59.3 5.1 32 216-248 16-47 (421)
213 TIGR03608 L_ocin_972_ABC putat 94.4 0.036 7.7E-07 53.0 3.4 25 219-243 22-46 (206)
214 cd03260 ABC_PstB_phosphate_tra 94.4 0.035 7.6E-07 54.0 3.4 26 219-244 24-49 (227)
215 cd03257 ABC_NikE_OppD_transpor 94.4 0.034 7.4E-07 53.8 3.3 25 219-243 29-53 (228)
216 cd03224 ABC_TM1139_LivF_branch 94.4 0.036 7.9E-07 53.5 3.5 25 219-243 24-48 (222)
217 cd03259 ABC_Carb_Solutes_like 94.3 0.037 8E-07 53.3 3.4 25 219-243 24-48 (213)
218 cd03219 ABC_Mj1267_LivG_branch 94.3 0.035 7.6E-07 54.3 3.2 25 219-243 24-48 (236)
219 cd03226 ABC_cobalt_CbiO_domain 94.3 0.037 8.1E-07 53.1 3.3 25 219-243 24-48 (205)
220 TIGR02315 ABC_phnC phosphonate 94.3 0.038 8.2E-07 54.2 3.4 25 219-243 26-50 (243)
221 cd03301 ABC_MalK_N The N-termi 94.3 0.039 8.5E-07 53.0 3.4 26 219-244 24-49 (213)
222 TIGR01978 sufC FeS assembly AT 94.3 0.039 8.4E-07 54.1 3.4 25 219-243 24-48 (243)
223 cd03262 ABC_HisP_GlnQ_permease 94.3 0.041 8.8E-07 52.9 3.5 25 219-243 24-48 (213)
224 cd03235 ABC_Metallic_Cations A 94.2 0.036 7.8E-07 53.4 3.1 25 219-243 23-47 (213)
225 smart00483 POLXc DNA polymeras 94.2 0.032 6.9E-07 58.9 2.9 91 131-236 86-179 (334)
226 cd03263 ABC_subfamily_A The AB 94.2 0.042 9.1E-07 53.1 3.5 25 219-243 26-50 (220)
227 cd03268 ABC_BcrA_bacitracin_re 94.2 0.042 9.1E-07 52.8 3.4 25 219-243 24-48 (208)
228 PRK14721 flhF flagellar biosyn 94.2 0.13 2.8E-06 56.2 7.5 26 219-244 189-214 (420)
229 cd03293 ABC_NrtD_SsuB_transpor 94.2 0.041 9E-07 53.4 3.4 25 219-243 28-52 (220)
230 cd03230 ABC_DR_subfamily_A Thi 94.2 0.045 9.7E-07 51.4 3.5 25 219-243 24-48 (173)
231 PRK12724 flagellar biosynthesi 94.1 0.12 2.7E-06 56.5 7.3 26 219-244 221-246 (432)
232 cd03265 ABC_DrrA DrrA is the A 94.1 0.043 9.3E-07 53.3 3.4 25 219-243 24-48 (220)
233 cd03256 ABC_PhnC_transporter A 94.1 0.042 9.1E-07 53.8 3.4 25 219-243 25-49 (241)
234 cd03266 ABC_NatA_sodium_export 94.1 0.043 9.3E-07 53.0 3.4 25 219-243 29-53 (218)
235 cd03261 ABC_Org_Solvent_Resist 94.1 0.043 9.3E-07 53.8 3.4 25 219-243 24-48 (235)
236 cd03246 ABCC_Protease_Secretio 94.1 0.049 1.1E-06 51.2 3.6 26 219-244 26-51 (173)
237 PF14520 HHH_5: Helix-hairpin- 94.0 0.014 3.1E-07 46.3 -0.1 30 135-164 6-35 (60)
238 cd03258 ABC_MetN_methionine_tr 94.0 0.045 9.8E-07 53.5 3.4 26 219-244 29-54 (233)
239 COG0802 Predicted ATPase or ki 94.0 0.054 1.2E-06 51.5 3.8 29 219-248 23-51 (149)
240 cd03232 ABC_PDR_domain2 The pl 94.0 0.047 1E-06 52.2 3.4 25 219-243 31-55 (192)
241 PRK10584 putative ABC transpor 94.0 0.048 1E-06 53.1 3.4 25 219-243 34-58 (228)
242 PRK14242 phosphate transporter 94.0 0.047 1E-06 54.1 3.4 25 219-243 30-54 (253)
243 cd03238 ABC_UvrA The excision 94.0 0.047 1E-06 52.5 3.3 24 219-242 19-42 (176)
244 PRK11629 lolD lipoprotein tran 94.0 0.048 1E-06 53.5 3.4 25 219-243 33-57 (233)
245 cd03296 ABC_CysA_sulfate_impor 94.0 0.047 1E-06 53.7 3.4 26 219-244 26-51 (239)
246 cd03264 ABC_drug_resistance_li 94.0 0.044 9.6E-07 52.7 3.1 23 220-243 25-47 (211)
247 TIGR03410 urea_trans_UrtE urea 94.0 0.048 1E-06 53.1 3.4 26 219-244 24-49 (230)
248 cd03218 ABC_YhbG The ABC trans 94.0 0.049 1.1E-06 53.1 3.4 25 219-243 24-48 (232)
249 smart00763 AAA_PrkA PrkA AAA d 94.0 0.054 1.2E-06 58.1 4.0 29 219-248 76-104 (361)
250 PRK13695 putative NTPase; Prov 93.9 0.053 1.1E-06 50.9 3.5 23 222-244 1-23 (174)
251 TIGR03864 PQQ_ABC_ATP ABC tran 93.9 0.048 1.1E-06 53.5 3.4 25 219-243 25-49 (236)
252 cd03247 ABCC_cytochrome_bd The 93.9 0.051 1.1E-06 51.2 3.4 25 219-243 26-50 (178)
253 PRK14974 cell division protein 93.9 0.15 3.2E-06 54.2 7.1 26 219-244 138-163 (336)
254 PRK11124 artP arginine transpo 93.9 0.049 1.1E-06 53.6 3.4 25 219-243 26-50 (242)
255 cd03253 ABCC_ATM1_transporter 93.9 0.051 1.1E-06 53.1 3.5 26 219-244 25-50 (236)
256 PF13173 AAA_14: AAA domain 93.9 0.061 1.3E-06 48.1 3.7 24 221-244 2-25 (128)
257 cd03223 ABCD_peroxisomal_ALDP 93.9 0.052 1.1E-06 50.9 3.4 25 219-243 25-49 (166)
258 COG3839 MalK ABC-type sugar tr 93.9 0.046 1E-06 58.1 3.4 25 219-243 27-51 (338)
259 PRK10247 putative ABC transpor 93.9 0.052 1.1E-06 53.1 3.5 25 219-243 31-55 (225)
260 cd03214 ABC_Iron-Siderophores_ 93.9 0.053 1.2E-06 51.2 3.4 25 219-243 23-47 (180)
261 cd03254 ABCC_Glucan_exporter_l 93.9 0.051 1.1E-06 52.8 3.4 26 219-244 27-52 (229)
262 PF03308 ArgK: ArgK protein; 93.8 0.086 1.9E-06 54.4 5.1 29 219-247 27-55 (266)
263 PRK11264 putative amino-acid A 93.8 0.052 1.1E-06 53.6 3.4 26 219-244 27-52 (250)
264 COG1126 GlnQ ABC-type polar am 93.8 0.051 1.1E-06 54.9 3.3 26 218-243 25-50 (240)
265 PRK10895 lipopolysaccharide AB 93.8 0.055 1.2E-06 53.2 3.5 25 219-243 27-51 (241)
266 PLN02796 D-glycerate 3-kinase 93.8 0.056 1.2E-06 57.6 3.8 28 219-247 98-125 (347)
267 TIGR02323 CP_lyasePhnK phospho 93.8 0.053 1.2E-06 53.7 3.4 26 219-244 27-52 (253)
268 PRK13539 cytochrome c biogenes 93.8 0.055 1.2E-06 52.3 3.4 25 219-243 26-50 (207)
269 PRK14247 phosphate ABC transpo 93.8 0.054 1.2E-06 53.6 3.4 26 219-244 27-52 (250)
270 PF08477 Miro: Miro-like prote 93.8 0.061 1.3E-06 46.2 3.3 21 224-244 2-22 (119)
271 TIGR02770 nickel_nikD nickel i 93.8 0.053 1.1E-06 53.1 3.3 26 219-244 10-35 (230)
272 cd01130 VirB11-like_ATPase Typ 93.7 0.094 2E-06 50.1 4.9 25 220-244 24-48 (186)
273 cd03244 ABCC_MRP_domain2 Domai 93.7 0.056 1.2E-06 52.3 3.4 26 219-244 28-53 (221)
274 PRK11701 phnK phosphonate C-P 93.7 0.054 1.2E-06 54.0 3.4 26 219-244 30-55 (258)
275 PRK05800 cobU adenosylcobinami 93.7 0.072 1.6E-06 50.9 4.0 23 222-244 2-24 (170)
276 cd03216 ABC_Carb_Monos_I This 93.7 0.059 1.3E-06 50.4 3.4 25 219-243 24-48 (163)
277 cd03298 ABC_ThiQ_thiamine_tran 93.7 0.059 1.3E-06 51.8 3.5 25 219-243 22-46 (211)
278 COG1120 FepC ABC-type cobalami 93.7 0.057 1.2E-06 55.4 3.5 26 219-244 26-51 (258)
279 cd00820 PEPCK_HprK Phosphoenol 93.7 0.063 1.4E-06 48.2 3.3 23 220-242 14-36 (107)
280 PRK14250 phosphate ABC transpo 93.7 0.057 1.2E-06 53.4 3.4 26 219-244 27-52 (241)
281 PRK14262 phosphate ABC transpo 93.7 0.057 1.2E-06 53.4 3.4 25 219-243 27-51 (250)
282 cd03215 ABC_Carb_Monos_II This 93.7 0.059 1.3E-06 51.1 3.3 26 219-244 24-49 (182)
283 cd03222 ABC_RNaseL_inhibitor T 93.7 0.057 1.2E-06 52.0 3.3 25 219-243 23-47 (177)
284 PRK13538 cytochrome c biogenes 93.7 0.062 1.3E-06 51.7 3.5 26 219-244 25-50 (204)
285 TIGR03005 ectoine_ehuA ectoine 93.6 0.057 1.2E-06 53.5 3.4 25 219-243 24-48 (252)
286 PHA02575 1 deoxynucleoside mon 93.6 0.056 1.2E-06 54.6 3.3 23 222-244 1-23 (227)
287 cd03252 ABCC_Hemolysin The ABC 93.6 0.059 1.3E-06 52.8 3.4 26 219-244 26-51 (237)
288 PF13189 Cytidylate_kin2: Cyti 93.6 0.28 6E-06 46.9 7.9 26 223-249 1-26 (179)
289 cd00141 NT_POLXc Nucleotidyltr 93.6 0.067 1.4E-06 55.8 3.9 71 132-205 83-156 (307)
290 cd04171 SelB SelB subfamily. 93.6 0.056 1.2E-06 48.3 2.9 22 222-243 1-22 (164)
291 PRK13540 cytochrome c biogenes 93.6 0.062 1.3E-06 51.6 3.4 25 219-243 25-49 (200)
292 cd03245 ABCC_bacteriocin_expor 93.6 0.061 1.3E-06 52.0 3.4 25 219-243 28-52 (220)
293 PRK09493 glnQ glutamine ABC tr 93.6 0.061 1.3E-06 52.9 3.4 26 219-244 25-50 (240)
294 PRK13541 cytochrome c biogenes 93.6 0.063 1.4E-06 51.3 3.4 26 219-244 24-49 (195)
295 cd00009 AAA The AAA+ (ATPases 93.6 0.079 1.7E-06 45.3 3.7 24 221-244 19-42 (151)
296 cd03295 ABC_OpuCA_Osmoprotecti 93.6 0.061 1.3E-06 53.0 3.4 26 219-244 25-50 (242)
297 cd03250 ABCC_MRP_domain1 Domai 93.6 0.062 1.4E-06 51.5 3.4 25 219-243 29-53 (204)
298 TIGR03771 anch_rpt_ABC anchore 93.6 0.061 1.3E-06 52.6 3.4 25 220-244 5-29 (223)
299 PRK14241 phosphate transporter 93.6 0.062 1.3E-06 53.6 3.5 26 219-244 28-53 (258)
300 PRK12723 flagellar biosynthesi 93.6 0.22 4.7E-06 53.9 7.8 26 219-244 172-197 (388)
301 PRK11300 livG leucine/isoleuci 93.6 0.062 1.3E-06 53.2 3.4 26 219-244 29-54 (255)
302 PRK10744 pstB phosphate transp 93.5 0.061 1.3E-06 53.8 3.4 26 219-244 37-62 (260)
303 TIGR02239 recomb_RAD51 DNA rep 93.5 0.11 2.4E-06 54.4 5.4 25 219-243 94-118 (316)
304 PRK10908 cell division protein 93.5 0.064 1.4E-06 52.1 3.4 25 219-243 26-50 (222)
305 PRK11248 tauB taurine transpor 93.5 0.062 1.3E-06 53.9 3.4 26 219-244 25-50 (255)
306 PRK11247 ssuB aliphatic sulfon 93.5 0.062 1.3E-06 54.2 3.4 26 219-244 36-61 (257)
307 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.5 0.066 1.4E-06 49.2 3.3 25 219-243 24-48 (144)
308 PRK14255 phosphate ABC transpo 93.5 0.063 1.4E-06 53.2 3.4 25 219-243 29-53 (252)
309 TIGR01184 ntrCD nitrate transp 93.5 0.065 1.4E-06 52.7 3.4 26 219-244 9-34 (230)
310 cd03234 ABCG_White The White s 93.5 0.068 1.5E-06 52.2 3.5 26 219-244 31-56 (226)
311 cd03267 ABC_NatA_like Similar 93.5 0.064 1.4E-06 52.9 3.4 25 219-243 45-69 (236)
312 PF00437 T2SE: Type II/IV secr 93.5 0.12 2.7E-06 51.7 5.5 39 220-259 126-165 (270)
313 cd03228 ABCC_MRP_Like The MRP 93.5 0.069 1.5E-06 50.1 3.4 26 219-244 26-51 (171)
314 PRK14267 phosphate ABC transpo 93.5 0.066 1.4E-06 53.1 3.5 26 219-244 28-53 (253)
315 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.5 0.064 1.4E-06 52.6 3.4 26 219-244 27-52 (238)
316 TIGR01189 ccmA heme ABC export 93.5 0.068 1.5E-06 51.1 3.5 26 219-244 24-49 (198)
317 PRK14239 phosphate transporter 93.5 0.064 1.4E-06 53.0 3.4 25 219-243 29-53 (252)
318 PF01926 MMR_HSR1: 50S ribosom 93.5 0.063 1.4E-06 46.6 2.9 20 224-243 2-21 (116)
319 cd03369 ABCC_NFT1 Domain 2 of 93.5 0.07 1.5E-06 51.3 3.5 25 219-243 32-56 (207)
320 PRK15177 Vi polysaccharide exp 93.5 0.066 1.4E-06 52.3 3.4 25 219-243 11-35 (213)
321 cd03237 ABC_RNaseL_inhibitor_d 93.5 0.064 1.4E-06 53.8 3.4 26 219-244 23-48 (246)
322 COG0645 Predicted kinase [Gene 93.4 0.2 4.3E-06 48.6 6.5 28 221-249 1-28 (170)
323 PRK14274 phosphate ABC transpo 93.4 0.067 1.4E-06 53.4 3.4 26 219-244 36-61 (259)
324 TIGR00972 3a0107s01c2 phosphat 93.4 0.067 1.5E-06 52.9 3.4 25 219-243 25-49 (247)
325 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.4 0.069 1.5E-06 52.4 3.4 25 219-243 46-70 (224)
326 cd03233 ABC_PDR_domain1 The pl 93.4 0.064 1.4E-06 51.8 3.1 26 219-244 31-56 (202)
327 PRK14251 phosphate ABC transpo 93.4 0.07 1.5E-06 52.8 3.4 26 219-244 28-53 (251)
328 cd03236 ABC_RNaseL_inhibitor_d 93.4 0.069 1.5E-06 54.0 3.4 27 218-244 23-49 (255)
329 PRK14240 phosphate transporter 93.3 0.072 1.6E-06 52.7 3.5 25 219-243 27-51 (250)
330 TIGR00968 3a0106s01 sulfate AB 93.3 0.072 1.6E-06 52.6 3.4 25 219-243 24-48 (237)
331 PF05729 NACHT: NACHT domain 93.3 0.08 1.7E-06 47.5 3.4 22 223-244 2-23 (166)
332 PRK13638 cbiO cobalt transport 93.3 0.066 1.4E-06 53.9 3.2 25 219-243 25-49 (271)
333 TIGR03411 urea_trans_UrtD urea 93.3 0.074 1.6E-06 52.3 3.5 25 219-243 26-50 (242)
334 PF07728 AAA_5: AAA domain (dy 93.3 0.075 1.6E-06 47.6 3.2 25 224-249 2-26 (139)
335 cd01131 PilT Pilus retraction 93.3 0.13 2.7E-06 49.9 5.0 22 223-244 3-24 (198)
336 cd03251 ABCC_MsbA MsbA is an e 93.3 0.073 1.6E-06 52.0 3.4 26 219-244 26-51 (234)
337 PRK14256 phosphate ABC transpo 93.3 0.074 1.6E-06 52.7 3.5 26 219-244 28-53 (252)
338 TIGR02324 CP_lyasePhnL phospho 93.3 0.076 1.6E-06 51.6 3.5 25 219-243 32-56 (224)
339 PRK13648 cbiO cobalt transport 93.3 0.072 1.6E-06 53.6 3.4 26 219-244 33-58 (269)
340 PLN02165 adenylate isopentenyl 93.3 0.082 1.8E-06 56.1 3.9 28 219-247 41-68 (334)
341 PRK14248 phosphate ABC transpo 93.3 0.073 1.6E-06 53.4 3.4 25 219-243 45-69 (268)
342 PRK10771 thiQ thiamine transpo 93.3 0.072 1.6E-06 52.2 3.3 26 219-244 23-48 (232)
343 cd03217 ABC_FeS_Assembly ABC-t 93.3 0.077 1.7E-06 51.1 3.5 25 219-243 24-48 (200)
344 PRK14272 phosphate ABC transpo 93.2 0.077 1.7E-06 52.5 3.5 26 219-244 28-53 (252)
345 CHL00131 ycf16 sulfate ABC tra 93.2 0.07 1.5E-06 52.8 3.2 25 219-243 31-55 (252)
346 PF03193 DUF258: Protein of un 93.2 0.078 1.7E-06 50.8 3.4 24 221-244 35-58 (161)
347 PRK13649 cbiO cobalt transport 93.2 0.072 1.6E-06 53.8 3.3 25 219-243 31-55 (280)
348 PRK14269 phosphate ABC transpo 93.2 0.076 1.7E-06 52.6 3.4 25 219-243 26-50 (246)
349 TIGR01277 thiQ thiamine ABC tr 93.2 0.078 1.7E-06 51.3 3.4 26 219-244 22-47 (213)
350 cd03248 ABCC_TAP TAP, the Tran 93.2 0.077 1.7E-06 51.6 3.4 26 219-244 38-63 (226)
351 PF13401 AAA_22: AAA domain; P 93.2 0.079 1.7E-06 46.3 3.1 25 221-245 4-28 (131)
352 PRK11831 putative ABC transpor 93.2 0.074 1.6E-06 53.6 3.3 26 219-244 31-56 (269)
353 PF13555 AAA_29: P-loop contai 93.2 0.1 2.2E-06 42.7 3.5 24 221-244 23-46 (62)
354 cd03231 ABC_CcmA_heme_exporter 93.2 0.08 1.7E-06 50.9 3.4 25 219-243 24-48 (201)
355 PRK15056 manganese/iron transp 93.2 0.076 1.6E-06 53.6 3.4 25 219-243 31-55 (272)
356 PRK14270 phosphate ABC transpo 93.2 0.079 1.7E-06 52.5 3.4 25 219-243 28-52 (251)
357 cd00267 ABC_ATPase ABC (ATP-bi 93.1 0.084 1.8E-06 48.5 3.4 24 220-243 24-47 (157)
358 TIGR03740 galliderm_ABC gallid 93.1 0.081 1.7E-06 51.5 3.4 26 219-244 24-49 (223)
359 PRK14249 phosphate ABC transpo 93.1 0.081 1.8E-06 52.5 3.4 26 219-244 28-53 (251)
360 PRK10575 iron-hydroxamate tran 93.1 0.073 1.6E-06 53.4 3.1 25 219-243 35-59 (265)
361 PRK00091 miaA tRNA delta(2)-is 93.1 0.091 2E-06 55.0 3.9 29 219-248 2-30 (307)
362 PF03266 NTPase_1: NTPase; In 93.1 0.084 1.8E-06 50.4 3.4 21 224-244 2-22 (168)
363 PRK14235 phosphate transporter 93.1 0.082 1.8E-06 53.2 3.5 26 219-244 43-68 (267)
364 PRK14259 phosphate ABC transpo 93.1 0.082 1.8E-06 53.4 3.5 25 219-243 37-61 (269)
365 PRK09984 phosphonate/organopho 93.1 0.08 1.7E-06 52.9 3.4 26 219-244 28-53 (262)
366 PRK13640 cbiO cobalt transport 93.1 0.08 1.7E-06 53.9 3.4 26 219-244 31-56 (282)
367 TIGR02769 nickel_nikE nickel i 93.0 0.082 1.8E-06 53.1 3.4 26 219-244 35-60 (265)
368 PRK09580 sufC cysteine desulfu 93.0 0.076 1.7E-06 52.3 3.1 25 219-243 25-49 (248)
369 PRK09544 znuC high-affinity zi 93.0 0.086 1.9E-06 52.9 3.5 25 219-243 28-52 (251)
370 PRK13543 cytochrome c biogenes 93.0 0.085 1.9E-06 51.2 3.4 25 219-243 35-59 (214)
371 PF13191 AAA_16: AAA ATPase do 93.0 0.085 1.8E-06 48.6 3.2 26 219-244 22-47 (185)
372 PRK10751 molybdopterin-guanine 93.0 0.1 2.3E-06 50.4 3.9 30 219-249 4-33 (173)
373 PRK14245 phosphate ABC transpo 93.0 0.086 1.9E-06 52.2 3.4 25 219-243 27-51 (250)
374 cd03294 ABC_Pro_Gly_Bertaine T 93.0 0.085 1.8E-06 53.3 3.4 26 219-244 48-73 (269)
375 PRK13548 hmuV hemin importer A 93.0 0.084 1.8E-06 52.9 3.3 26 219-244 26-51 (258)
376 TIGR02868 CydC thiol reductant 92.9 0.08 1.7E-06 58.1 3.4 25 219-243 359-383 (529)
377 TIGR01425 SRP54_euk signal rec 92.9 0.63 1.4E-05 51.1 10.2 26 219-244 98-123 (429)
378 PRK14268 phosphate ABC transpo 92.9 0.09 1.9E-06 52.5 3.5 25 219-243 36-60 (258)
379 TIGR00101 ureG urease accessor 92.9 0.1 2.2E-06 50.9 3.8 24 221-244 1-24 (199)
380 PRK10419 nikE nickel transport 92.9 0.085 1.8E-06 53.2 3.3 25 219-243 36-60 (268)
381 PRK13645 cbiO cobalt transport 92.9 0.085 1.8E-06 53.7 3.4 26 219-244 35-60 (289)
382 cd03290 ABCC_SUR1_N The SUR do 92.9 0.092 2E-06 50.9 3.4 25 220-244 26-50 (218)
383 PRK14244 phosphate ABC transpo 92.9 0.094 2E-06 52.0 3.5 26 219-244 29-54 (251)
384 PRK14261 phosphate ABC transpo 92.9 0.09 1.9E-06 52.2 3.4 25 219-243 30-54 (253)
385 PRK13647 cbiO cobalt transport 92.9 0.088 1.9E-06 53.4 3.4 25 219-243 29-53 (274)
386 TIGR02982 heterocyst_DevA ABC 92.9 0.093 2E-06 51.0 3.4 25 219-243 29-53 (220)
387 cd03213 ABCG_EPDR ABCG transpo 92.9 0.092 2E-06 50.4 3.3 25 219-243 33-57 (194)
388 PRK14253 phosphate ABC transpo 92.8 0.096 2.1E-06 51.8 3.5 26 219-244 27-52 (249)
389 PRK14273 phosphate ABC transpo 92.8 0.093 2E-06 52.1 3.4 26 219-244 31-56 (254)
390 PRK13632 cbiO cobalt transport 92.8 0.09 2E-06 53.0 3.4 26 219-244 33-58 (271)
391 COG2884 FtsE Predicted ATPase 92.8 0.093 2E-06 52.3 3.3 26 219-244 26-51 (223)
392 PRK13547 hmuV hemin importer A 92.8 0.089 1.9E-06 53.6 3.3 26 219-244 25-50 (272)
393 cd03297 ABC_ModC_molybdenum_tr 92.8 0.089 1.9E-06 50.8 3.2 22 222-243 24-45 (214)
394 PRK14237 phosphate transporter 92.8 0.095 2.1E-06 52.8 3.5 26 219-244 44-69 (267)
395 COG3842 PotA ABC-type spermidi 92.8 0.089 1.9E-06 56.3 3.4 25 219-243 29-53 (352)
396 PF10391 DNA_pol_lambd_f: Fing 92.7 0.067 1.5E-06 42.2 1.8 27 137-163 5-31 (52)
397 PRK10619 histidine/lysine/argi 92.7 0.099 2.1E-06 52.1 3.4 26 219-244 29-54 (257)
398 PRK14260 phosphate ABC transpo 92.7 0.1 2.2E-06 52.2 3.5 26 219-244 31-56 (259)
399 PRK13643 cbiO cobalt transport 92.7 0.096 2.1E-06 53.6 3.3 25 219-243 30-54 (288)
400 cd03243 ABC_MutS_homologs The 92.7 0.1 2.2E-06 50.4 3.3 24 220-243 28-51 (202)
401 COG1855 ATPase (PilT family) [ 92.7 0.12 2.7E-06 57.0 4.3 27 223-250 265-291 (604)
402 TIGR01288 nodI ATP-binding ABC 92.7 0.098 2.1E-06 53.8 3.4 25 219-243 28-52 (303)
403 PRK14238 phosphate transporter 92.6 0.1 2.3E-06 52.7 3.5 26 219-244 48-73 (271)
404 PRK14243 phosphate transporter 92.6 0.1 2.2E-06 52.5 3.4 25 219-243 34-58 (264)
405 PF00448 SRP54: SRP54-type pro 92.6 0.13 2.9E-06 50.2 4.1 25 221-245 1-25 (196)
406 PRK13646 cbiO cobalt transport 92.6 0.099 2.1E-06 53.3 3.4 25 219-243 31-55 (286)
407 COG1121 ZnuC ABC-type Mn/Zn tr 92.6 0.096 2.1E-06 53.7 3.3 25 219-243 28-52 (254)
408 PRK11614 livF leucine/isoleuci 92.6 0.096 2.1E-06 51.4 3.2 25 219-243 29-53 (237)
409 PF03205 MobB: Molybdopterin g 92.6 0.19 4.1E-06 46.6 4.9 25 222-246 1-25 (140)
410 cd03283 ABC_MutS-like MutS-lik 92.6 0.099 2.1E-06 51.0 3.2 23 221-243 25-47 (199)
411 PRK15112 antimicrobial peptide 92.6 0.1 2.2E-06 52.5 3.4 26 219-244 37-62 (267)
412 PF03215 Rad17: Rad17 cell cyc 92.6 0.14 3E-06 57.4 4.7 50 187-249 23-72 (519)
413 cd04164 trmE TrmE (MnmE, ThdF, 92.6 0.11 2.4E-06 45.8 3.2 23 221-243 1-23 (157)
414 TIGR01188 drrA daunorubicin re 92.6 0.11 2.3E-06 53.5 3.5 25 219-243 17-41 (302)
415 PRK09435 membrane ATPase/prote 92.6 0.18 4E-06 53.4 5.3 27 218-244 53-79 (332)
416 TIGR03873 F420-0_ABC_ATP propo 92.5 0.1 2.2E-06 52.0 3.3 25 219-243 25-49 (256)
417 cd04159 Arl10_like Arl10-like 92.5 0.1 2.2E-06 45.8 2.8 20 224-243 2-21 (159)
418 PLN03046 D-glycerate 3-kinase; 92.5 0.12 2.7E-06 56.7 4.0 26 219-244 210-235 (460)
419 TIGR02881 spore_V_K stage V sp 92.5 0.14 3.1E-06 51.4 4.2 26 219-244 40-65 (261)
420 PRK10418 nikD nickel transport 92.5 0.11 2.4E-06 51.8 3.4 26 219-244 27-52 (254)
421 PRK14252 phosphate ABC transpo 92.4 0.11 2.5E-06 52.0 3.5 25 219-243 40-64 (265)
422 PLN02772 guanylate kinase 92.4 0.14 2.9E-06 55.7 4.3 26 219-244 133-158 (398)
423 cd01876 YihA_EngB The YihA (En 92.4 0.1 2.2E-06 46.1 2.8 20 224-243 2-21 (170)
424 PRK14258 phosphate ABC transpo 92.4 0.12 2.5E-06 51.9 3.5 26 219-244 31-56 (261)
425 PRK13633 cobalt transporter AT 92.4 0.11 2.4E-06 52.8 3.4 26 219-244 34-59 (280)
426 PRK13546 teichoic acids export 92.4 0.11 2.4E-06 52.7 3.4 26 219-244 48-73 (264)
427 PRK13650 cbiO cobalt transport 92.4 0.11 2.4E-06 52.8 3.4 25 219-243 31-55 (279)
428 COG1703 ArgK Putative periplas 92.4 0.17 3.8E-06 53.2 4.8 28 218-245 48-75 (323)
429 PRK11231 fecE iron-dicitrate t 92.4 0.12 2.5E-06 51.6 3.4 25 219-243 26-50 (255)
430 PRK14266 phosphate ABC transpo 92.4 0.12 2.6E-06 51.1 3.5 25 219-243 27-51 (250)
431 PRK13635 cbiO cobalt transport 92.3 0.11 2.5E-06 52.8 3.4 26 219-244 31-56 (279)
432 PRK03695 vitamin B12-transport 92.3 0.1 2.3E-06 51.9 3.1 25 219-243 20-44 (248)
433 PRK13651 cobalt transporter AT 92.3 0.11 2.4E-06 53.8 3.4 25 219-243 31-55 (305)
434 PRK10253 iron-enterobactin tra 92.3 0.11 2.3E-06 52.3 3.2 26 219-244 31-56 (265)
435 cd04155 Arl3 Arl3 subfamily. 92.3 0.13 2.9E-06 46.9 3.5 25 219-243 12-36 (173)
436 PRK13644 cbiO cobalt transport 92.3 0.12 2.5E-06 52.5 3.4 25 219-243 26-50 (274)
437 PRK14246 phosphate ABC transpo 92.3 0.12 2.5E-06 52.0 3.4 25 220-244 35-59 (257)
438 PF07726 AAA_3: ATPase family 92.3 0.089 1.9E-06 49.0 2.3 25 224-249 2-26 (131)
439 PRK14275 phosphate ABC transpo 92.3 0.12 2.5E-06 52.9 3.4 25 219-243 63-87 (286)
440 cd03300 ABC_PotA_N PotA is an 92.3 0.12 2.6E-06 50.7 3.4 26 219-244 24-49 (232)
441 cd03271 ABC_UvrA_II The excisi 92.3 0.11 2.3E-06 53.2 3.1 33 205-241 9-41 (261)
442 PF10662 PduV-EutP: Ethanolami 92.3 0.11 2.4E-06 48.9 3.0 22 223-244 3-24 (143)
443 PF11731 Cdd1: Pathogenicity l 92.3 0.082 1.8E-06 46.6 1.9 36 132-167 10-50 (93)
444 PRK13641 cbiO cobalt transport 92.3 0.12 2.6E-06 52.8 3.4 25 219-243 31-55 (287)
445 PRK13652 cbiO cobalt transport 92.2 0.12 2.6E-06 52.4 3.4 25 219-243 28-52 (277)
446 PRK14265 phosphate ABC transpo 92.2 0.12 2.6E-06 52.3 3.4 25 219-243 44-68 (274)
447 PRK13639 cbiO cobalt transport 92.2 0.12 2.6E-06 52.4 3.3 25 219-243 26-50 (275)
448 cd01129 PulE-GspE PulE/GspE Th 92.2 0.19 4.2E-06 51.2 4.9 22 223-244 82-103 (264)
449 PRK13642 cbiO cobalt transport 92.2 0.12 2.6E-06 52.4 3.4 26 219-244 31-56 (277)
450 PRK13768 GTPase; Provisional 92.2 0.22 4.7E-06 50.4 5.1 24 221-244 2-25 (253)
451 PRK14236 phosphate transporter 92.2 0.12 2.7E-06 52.1 3.4 26 219-244 49-74 (272)
452 PRK13637 cbiO cobalt transport 92.2 0.12 2.6E-06 52.8 3.4 25 219-243 31-55 (287)
453 TIGR03015 pepcterm_ATPase puta 92.2 0.13 2.8E-06 50.9 3.5 23 222-244 44-66 (269)
454 KOG0744 AAA+-type ATPase [Post 92.2 0.12 2.6E-06 55.1 3.3 27 220-247 176-202 (423)
455 PRK11432 fbpC ferric transport 92.1 0.12 2.6E-06 54.8 3.4 25 219-243 30-54 (351)
456 PRK14263 phosphate ABC transpo 92.1 0.13 2.8E-06 51.8 3.4 26 219-244 32-57 (261)
457 PRK14271 phosphate ABC transpo 92.1 0.13 2.8E-06 52.3 3.4 25 219-243 45-69 (276)
458 PRK11650 ugpC glycerol-3-phosp 92.1 0.12 2.6E-06 54.8 3.4 25 219-243 28-52 (356)
459 PRK13631 cbiO cobalt transport 92.1 0.12 2.7E-06 53.9 3.4 25 219-243 50-74 (320)
460 PRK14254 phosphate ABC transpo 92.1 0.13 2.8E-06 52.6 3.5 26 219-244 63-88 (285)
461 PRK11153 metN DL-methionine tr 92.1 0.12 2.7E-06 54.3 3.4 26 219-244 29-54 (343)
462 cd01120 RecA-like_NTPases RecA 92.1 0.12 2.7E-06 45.7 2.9 22 223-244 1-22 (165)
463 TIGR00231 small_GTP small GTP- 92.1 0.15 3.3E-06 43.9 3.4 23 222-244 2-24 (161)
464 cd03288 ABCC_SUR2 The SUR doma 92.0 0.14 3E-06 51.3 3.5 26 219-244 45-70 (257)
465 PRK11144 modC molybdate transp 92.0 0.13 2.7E-06 54.4 3.4 26 219-244 22-47 (352)
466 TIGR02142 modC_ABC molybdenum 92.0 0.13 2.8E-06 54.3 3.4 26 219-244 21-46 (354)
467 PRK11000 maltose/maltodextrin 92.0 0.13 2.7E-06 54.9 3.4 25 219-243 27-51 (369)
468 cd03299 ABC_ModC_like Archeal 92.0 0.14 3E-06 50.5 3.4 25 219-243 23-47 (235)
469 TIGR03238 dnd_assoc_3 dnd syst 92.0 0.087 1.9E-06 58.5 2.2 22 218-239 29-50 (504)
470 cd03278 ABC_SMC_barmotin Barmo 91.9 0.14 2.9E-06 49.8 3.2 23 220-243 22-44 (197)
471 cd03115 SRP The signal recogni 91.9 0.16 3.4E-06 47.4 3.6 22 223-244 2-23 (173)
472 COG2074 2-phosphoglycerate kin 91.9 0.75 1.6E-05 47.7 8.6 30 219-249 87-116 (299)
473 PRK12727 flagellar biosynthesi 91.9 0.41 9E-06 54.0 7.3 26 219-244 348-373 (559)
474 PRK14723 flhF flagellar biosyn 91.8 0.41 8.9E-06 56.0 7.5 26 220-245 184-209 (767)
475 PF00025 Arf: ADP-ribosylation 91.8 0.18 3.8E-06 47.6 3.7 25 219-243 12-36 (175)
476 PRK10851 sulfate/thiosulfate t 91.8 0.14 3.1E-06 54.3 3.4 26 219-244 26-51 (353)
477 PRK05703 flhF flagellar biosyn 91.8 0.44 9.6E-06 52.0 7.3 26 220-245 220-245 (424)
478 cd03279 ABC_sbcCD SbcCD and ot 91.7 0.13 2.8E-06 50.1 2.9 22 221-242 28-49 (213)
479 PRK11889 flhF flagellar biosyn 91.7 0.46 9.9E-06 52.1 7.2 26 219-244 239-264 (436)
480 TIGR03265 PhnT2 putative 2-ami 91.7 0.15 3.2E-06 54.2 3.4 24 220-243 29-52 (353)
481 PRK13537 nodulation ABC transp 91.7 0.15 3.3E-06 52.7 3.4 26 219-244 31-56 (306)
482 PRK13634 cbiO cobalt transport 91.7 0.15 3.2E-06 52.2 3.4 25 219-243 31-55 (290)
483 PRK13851 type IV secretion sys 91.6 0.2 4.4E-06 53.3 4.4 25 220-244 161-185 (344)
484 PRK14264 phosphate ABC transpo 91.6 0.16 3.4E-06 52.5 3.5 26 219-244 69-94 (305)
485 PRK09452 potA putrescine/sperm 91.6 0.15 3.2E-06 54.7 3.4 25 219-243 38-62 (375)
486 PRK11174 cysteine/glutathione 91.6 0.14 3.1E-06 56.9 3.4 26 219-244 374-399 (588)
487 CHL00195 ycf46 Ycf46; Provisio 91.6 0.31 6.6E-06 54.3 5.9 95 150-249 190-286 (489)
488 PF13245 AAA_19: Part of AAA d 91.5 0.2 4.4E-06 41.9 3.4 23 221-243 10-33 (76)
489 PRK13636 cbiO cobalt transport 91.5 0.16 3.4E-06 51.7 3.4 26 219-244 30-55 (283)
490 COG1117 PstB ABC-type phosphat 91.4 0.16 3.5E-06 51.5 3.2 24 220-243 32-55 (253)
491 cd01895 EngA2 EngA2 subfamily. 91.4 0.18 3.9E-06 45.0 3.3 23 221-243 2-24 (174)
492 PRK14490 putative bifunctional 91.4 0.19 4.2E-06 53.4 4.0 30 219-249 3-32 (369)
493 KOG3062 RNA polymerase II elon 91.4 1.2 2.7E-05 45.6 9.3 43 357-399 102-144 (281)
494 PRK11176 lipid transporter ATP 91.4 0.16 3.5E-06 56.4 3.5 25 220-244 368-392 (582)
495 COG1131 CcmA ABC-type multidru 91.4 0.18 3.9E-06 52.1 3.6 26 219-244 29-54 (293)
496 PF05496 RuvB_N: Holliday junc 91.3 0.18 3.9E-06 51.1 3.5 26 223-249 52-77 (233)
497 TIGR02203 MsbA_lipidA lipid A 91.3 0.17 3.6E-06 56.0 3.5 26 219-244 356-381 (571)
498 PRK14257 phosphate ABC transpo 91.3 0.18 3.8E-06 53.0 3.5 25 219-243 106-130 (329)
499 PRK13900 type IV secretion sys 91.2 0.24 5.3E-06 52.3 4.5 37 221-258 160-196 (332)
500 PF00910 RNA_helicase: RNA hel 91.2 0.17 3.7E-06 44.3 2.9 23 224-246 1-23 (107)
No 1
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-50 Score=386.39 Aligned_cols=222 Identities=47% Similarity=0.833 Sum_probs=201.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQE 299 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq~ 299 (539)
|...| ||||||+||||+++.+.+. ....++++.||+++|+++++.+.++|++||.+|.||+|+||.|.+.+|+++.
T Consensus 22 kr~~~-iEGNIa~GKsTfl~~~~~~---t~~~~ev~tEPV~kW~nV~~~~~n~L~~mY~ep~Rws~tfQtYv~ltrL~~~ 97 (244)
T KOG4235|consen 22 KRLSI-IEGNIAVGKSTFLNFFLNK---TYEEWEVLTEPVAKWQNVQGANANLLDMMYREPARWSYTFQTYVFLTRLKVQ 97 (244)
T ss_pred ceeEE-EecccccchHHHHHHHHhc---cCccceecCchHHHHhccccccccHHHHHhhchHhheehhhHHHHHHHHHHH
Confidence 44444 9999999999999988764 2234789999999999998777789999999999999999999999999998
Q ss_pred HHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhcc
Q 009257 300 RESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKR 379 (539)
Q Consensus 300 ~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRGR 379 (539)
.+..++.+++.||+||||||||||++++|++|.|++.+|.+|++||+|+.... .+.+|++|||+++|++|++||..|+|
T Consensus 98 ~~p~~~~kpvrimERSv~SdRyiFv~nl~esg~m~e~e~~iy~eW~d~i~~~~-~v~~dgiIYLrasPetc~~Ri~~R~R 176 (244)
T KOG4235|consen 98 LEPFNGRKPVRIMERSVYSDRYIFVENLYESGSMNEVEYVIYQEWFDWILRSM-DVSLDGIIYLRASPETCYKRIYLRAR 176 (244)
T ss_pred hcCCCCCCCeehhhhhhhhhHHHHHHHHHhcCCcccchhhhHHHHHHHHHhcc-ccccceEEEeecChHHHHHHHHHHhh
Confidence 88877778999999999999999999999999999999999999999998653 36899999999999999999999999
Q ss_pred ccccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecCCCCcccCCCCCcccccceeeecCccccccccCCceEEEcCCCCC
Q 009257 380 AEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSSIQKVPALVLDCEPNI 459 (539)
Q Consensus 380 d~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~~~~~~d~~~~pe~~d~V~~~~~~h~~~~~~~iPvLviD~d~~~ 459 (539)
.+|++++++||+.||..||.|+... +++ .|+++||||||||.++
T Consensus 177 ~EE~gipL~YLe~LH~~HE~WLi~~---------------~f~---------------------~lq~vpvLVLDad~n~ 220 (244)
T KOG4235|consen 177 EEEKGIPLKYLEALHELHESWLIKL---------------HFP---------------------NLQAVPVLVLDADHNM 220 (244)
T ss_pred hhhcCCcHHHHHHHHHHHHHHHHHH---------------hhh---------------------HhhcCCeEEEecccch
Confidence 9999999999999999999999732 222 3788999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHHHHH
Q 009257 460 DFSRDIDLKRQYARQVAEFFEFV 482 (539)
Q Consensus 460 DF~~d~~~~e~i~~~I~~fl~~v 482 (539)
||..+...++.+.++|.+|++.+
T Consensus 221 df~~e~~~~~~~~~~v~ef~~~~ 243 (244)
T KOG4235|consen 221 DFSLELTEYERLMREVNEFVKNL 243 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999864
No 2
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=321.77 Aligned_cols=205 Identities=28% Similarity=0.529 Sum_probs=181.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQER 300 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq~~ 300 (539)
.|+|+|+|+||+|||||+++|+++ +++..++|.+ +++++|++||+||.+|+|.+|+||++.|+++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~-l~~~~~~E~v------------ednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k 70 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH-LGFKVFYELV------------EDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIK 70 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH-hCCceeeecc------------cCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999997 7877555544 346999999999999999999999999999887
Q ss_pred HhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhc---CCCCCCcEEEEEeCCHHHHHHHHHHh
Q 009257 301 ESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSV---LPGLIPDGFIYLRASPDTCHKRMMLR 377 (539)
Q Consensus 301 e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~---Lp~l~PDLIIYLdaspE~~leRIkkR 377 (539)
...... ..+.||||++|.++|+..+++.|.|++.++++|.++++.|... +|+ .||++|||++++++.++||.+|
T Consensus 71 ~~~~~~--~~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~-~PdllIyLd~~~e~~l~RI~~R 147 (216)
T COG1428 71 KALSDK--NNILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPG-RPDLLIYLDASLETLLRRIAKR 147 (216)
T ss_pred HHhccc--ccccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCC-CCCEEEEEeCCHHHHHHHHHHh
Confidence 765332 2789999999988999999999999999999999999976544 443 8999999999999999999999
Q ss_pred ccccccCC---cHHHHHHHHHHHHHhhccCCCCCeEEEecCCCCcccCCCCCcccccceeeecCccccccccCCceEEEc
Q 009257 378 KRAEEGGV---SLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSSIQKVPALVLD 454 (539)
Q Consensus 378 GRd~E~~i---~leYLe~L~e~YEewl~~~~~~~~~VIdad~~~~~~d~~~~pe~~d~V~~~~~~h~~~~~~~iPvLviD 454 (539)
||++|+.. ..+|++.||..|..|+..+. .+|+|.||
T Consensus 148 gR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~-----------------------------------------~~~~l~i~ 186 (216)
T COG1428 148 GRPFEIDNFDENKDYLKDLHRRYDDWFENYD-----------------------------------------ACPVLGID 186 (216)
T ss_pred CCCcccccccchHHHHHHHHHHHHHHHHhcc-----------------------------------------cCCeeeec
Confidence 99999743 35799999999999998765 38999999
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 009257 455 CEPNIDFSRDIDLKRQYARQVAEFFEFVK 483 (539)
Q Consensus 455 ~d~~~DF~~d~~~~e~i~~~I~~fl~~v~ 483 (539)
++ ++||++|+++.+.++.+|.+.++...
T Consensus 187 ~~-~~D~~~~~~d~~~v~~~I~~~~~~~~ 214 (216)
T COG1428 187 GD-SIDFVNNEQDLEKVLDQILAKLKLLP 214 (216)
T ss_pred cc-eecccCCHHHHHHHHHHHHHHHhhhc
Confidence 97 89999999999999999999886543
No 3
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.98 E-value=3.4e-31 Score=257.63 Aligned_cols=203 Identities=22% Similarity=0.343 Sum_probs=161.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCCceE------EeeCCccc-cccCCCCccchhHhhhcCCC---CCcHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELRDLVE------IVPEPIDK-WQDVGPDHFNILGAYYDAPE---RYAYTFQNYVF 292 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~~~~E------vV~EPi~~-W~~i~~~g~~lLe~FY~Dp~---r~Sf~~Ql~FL 292 (539)
+|+|||+||||||||++.|+++ ++...+.+ .+.||++. |... ..++++|+.||.+|. +|++.+|++++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~-l~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~q~~~~ 78 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEK-LGMKYFPEAGIHYLDSTTGDGKPLDPA-FNGNCSLEKFYDDPKSNDGNSYRLQSWMY 78 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH-hCCCeeeccchhccccccccccccccc-cCCCcCHHHHhcCCcccCCcchHHHHHHH
Confidence 5999999999999999999996 66532111 12333322 1111 134568999999988 89999999999
Q ss_pred HHHHHHHHHhcC---CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHH
Q 009257 293 VTRVMQERESSG---GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDT 369 (539)
Q Consensus 293 adR~kq~~e~~~---~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~ 369 (539)
++|++|+.+.+. ..+..||+|||++|| ++|+.+.+++|.+.+.++..|..++..+...+| .||++|||+++|++
T Consensus 79 ~~R~~~~~~~i~~~l~~g~~VI~DR~~~S~-~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~--~Pd~~i~l~~~~~~ 155 (219)
T cd02030 79 SSRLLQYSDALEHLLSTGQGVVLERSPFSD-FVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELL--PPHLVIYLDVPVPE 155 (219)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEecchhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccC--CCCEEEEEeCCHHH
Confidence 999998766431 234679999999999 599999999999999999999999988766666 89999999999999
Q ss_pred HHHHHHHhccccccCCcHHHHHHHHHHHHHhhcc-CCCCCeEEEecCCCCcccCCCCCcccccceeeecCccccccccCC
Q 009257 370 CHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP-FESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSSIQKV 448 (539)
Q Consensus 370 ~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~-~~~~~~~VIdad~~~~~~d~~~~pe~~d~V~~~~~~h~~~~~~~i 448 (539)
+++||.+|||..|..++.+||++|++.|++|+.. +. ...
T Consensus 156 ~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~----------------------------------------~~~ 195 (219)
T cd02030 156 VQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEIS----------------------------------------EHS 195 (219)
T ss_pred HHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhc----------------------------------------cCC
Confidence 9999999999888888999999999999999754 22 025
Q ss_pred ceEEEcCCCCCCcccCHHHHHHHHHHHHH
Q 009257 449 PALVLDCEPNIDFSRDIDLKRQYARQVAE 477 (539)
Q Consensus 449 PvLviD~d~~~DF~~d~~~~e~i~~~I~~ 477 (539)
++++||++ ++++.+.|+.+|..
T Consensus 196 ~~i~id~~-------~~~~~e~i~~~I~~ 217 (219)
T cd02030 196 EVLQYDWT-------EAGDTEKVVEDIEY 217 (219)
T ss_pred CEEEEeCC-------ChhhHHHHHHHHHc
Confidence 78899985 45678888887753
No 4
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.97 E-value=4.4e-31 Score=248.99 Aligned_cols=169 Identities=39% Similarity=0.698 Sum_probs=144.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHHHHHh
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQERES 302 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq~~e~ 302 (539)
+|+|||++||||||+++.|+++ ++.. +++||+. |.. .++++++.||.+|.+|++.+|++|+++|++|+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~-~~~~----~~~Ep~~-~~~---~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~ 71 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH-LGYE----VVPEPVE-PDV---EGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDA 71 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-hCCc----ccccccc-ccC---CCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999986 5543 6789965 222 24678999999998999999999999999998776
Q ss_pred cC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhccc
Q 009257 303 SG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRA 380 (539)
Q Consensus 303 ~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRGRd 380 (539)
.. ..+.++|+||+++|+. +|+...+.+|.+.+.+++.|.+|+..+....+ .||++|||++++++|++|+++|+|+
T Consensus 72 ~~~~~~~~~vI~DR~~~S~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~~i~l~~~~~~~~~Ri~~R~r~ 148 (193)
T cd01673 72 LEHLSTGQGVILERSIFSDR-VFAEANLKEGGIMKTEYDLYNELFDNLIPELL--PPDLVIYLDASPETCLKRIKKRGRP 148 (193)
T ss_pred HhhcccCCceEEEcChhhhH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCC--CCCEEEEEeCCHHHHHHHHHhcCcH
Confidence 52 2357899999999996 67777777787777889999999998875544 7999999999999999999999998
Q ss_pred cccCCcHHHHHHHHHHHHHhhcc
Q 009257 381 EEGGVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 381 ~E~~i~leYLe~L~e~YEewl~~ 403 (539)
.|...+.+|++++++.|+.|+..
T Consensus 149 ~e~~~~~~~~~~l~~~y~~~~~~ 171 (193)
T cd01673 149 EEQGIPLDYLEDLHEAYEKWFLP 171 (193)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhh
Confidence 88777899999999999999965
No 5
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=99.95 E-value=1.7e-28 Score=225.83 Aligned_cols=143 Identities=38% Similarity=0.711 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCC-CcEEEEEeC
Q 009257 287 FQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLI-PDGFIYLRA 365 (539)
Q Consensus 287 ~Ql~FLadR~kq~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~-PDLIIYLda 365 (539)
+|++|+.+|++++.+. ..+..+|+|||++||.+||+.++++.|.+++.++..|.+|++++...++ . ||++|||++
T Consensus 1 ~Q~~~l~~R~~~~~~~--~~~~~~i~eRsi~sd~~vF~~~~~~~g~l~~~e~~~Y~~~~~~l~~~~~--~~pdl~IYL~~ 76 (146)
T PF01712_consen 1 FQLYFLLSRFEQYKEL--NTKQNVIMERSIYSDDFVFAKMLFKSGYLSKEEYDLYDKLFDELIEEIP--KSPDLIIYLDA 76 (146)
T ss_dssp HHHHHHHHHHHHHHHS--TSSSEEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCC--HH-SEEEEEE-
T ss_pred CcHHHHHHHHHHHHHH--hcCCCceecCCeeechHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh--ccCCeEEEEeC
Confidence 6999999999999883 3457899999999988999999999999999999999999999998887 6 999999999
Q ss_pred CHHHHHHHHHHhccccccCCcHHHHHHHH-HHHHHhhccCCCCCeEEEecCCCCcccCCCCCcccccceeeecCcccccc
Q 009257 366 SPDTCHKRMMLRKRAEEGGVSLDYLRSLH-EKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSS 444 (539)
Q Consensus 366 spE~~leRIkkRGRd~E~~i~leYLe~L~-e~YEewl~~~~~~~~~VIdad~~~~~~d~~~~pe~~d~V~~~~~~h~~~~ 444 (539)
||++|++||++|||++|.+++.+||++|+ +.|+.|+..+.
T Consensus 77 ~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~--------------------------------------- 117 (146)
T PF01712_consen 77 SPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYD--------------------------------------- 117 (146)
T ss_dssp -HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCT---------------------------------------
T ss_pred CHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCC---------------------------------------
Confidence 99999999999999999999999999999 89999997653
Q ss_pred ccCCceEEEcCCCCCCcccCHHHHHHHHHHH
Q 009257 445 IQKVPALVLDCEPNIDFSRDIDLKRQYARQV 475 (539)
Q Consensus 445 ~~~iPvLviD~d~~~DF~~d~~~~e~i~~~I 475 (539)
.+|+|+||++ ++||++++++.+.++++|
T Consensus 118 --~~~vl~id~~-~~d~~~~~~~~~~~~~~i 145 (146)
T PF01712_consen 118 --STPVLVIDAD-NLDFVENPEDIEQVINQI 145 (146)
T ss_dssp --TTTGCEEEEC-EEECCSHHTTHHHHHCCC
T ss_pred --CCceEEEECC-ccCcccCHHHHHHHHHhc
Confidence 3799999997 799999999999988765
No 6
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.92 E-value=1.9e-24 Score=217.51 Aligned_cols=196 Identities=21% Similarity=0.285 Sum_probs=156.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEe------eCCccccccCCC---C--ccchhHhhhcCCC-CCcHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIV------PEPIDKWQDVGP---D--HFNILGAYYDAPE-RYAYT 286 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV------~EPi~~W~~i~~---~--g~~lLe~FY~Dp~-r~Sf~ 286 (539)
.+.++|+|||+||+|||+|++.|++. |++..+.++- .--+..-+++.+ . ..+-+++||.||. ..+++
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~-Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~ 147 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQ-LGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAA 147 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHH-hCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHH
Confidence 45789999999999999999999997 8887654321 111111111111 0 1134789999995 46889
Q ss_pred HHHHHHHHHHHHHHHhc---CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEE
Q 009257 287 FQNYVFVTRVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYL 363 (539)
Q Consensus 287 ~Ql~FLadR~kq~~e~~---~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYL 363 (539)
+|..++..|+.|+.+++ -+++..|+++||++|| +||+.+++.+|++...-+..|.++....+.++ ++|+++|||
T Consensus 148 ~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SD-FVF~eAM~~qgyi~~~~~~hYnevr~nti~~l--l~PHLViYl 224 (393)
T KOG3877|consen 148 MQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSD-FVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQL--LWPHLVIYL 224 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchh-HHHHHHHHhcCcchhHHHHHHHHHHhhhhhhh--cCccEEEEE
Confidence 99999999999998764 2567889999999999 59999999999999998999998877665555 489999999
Q ss_pred eCCHHHHHHHHHHhccccccCC-cHHHHHHHHHHHHHhhccCCCCCeEEEecCCCC
Q 009257 364 RASPDTCHKRMMLRKRAEEGGV-SLDYLRSLHEKHENWLFPFESGNHGVLAVSKLP 418 (539)
Q Consensus 364 daspE~~leRIkkRGRd~E~~i-~leYLe~L~e~YEewl~~~~~~~~~VIdad~~~ 418 (539)
++|.+.|++||++||.+.|..+ +..||+.+.+.|++-+.+.-+.++.|+-+||+.
T Consensus 225 d~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~ 280 (393)
T KOG3877|consen 225 DTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTK 280 (393)
T ss_pred cCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeeccc
Confidence 9999999999999999888744 679999999999988555446789999999976
No 7
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.91 E-value=2.2e-23 Score=203.75 Aligned_cols=168 Identities=19% Similarity=0.126 Sum_probs=119.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCC-ceEEeeCCccccccCCCCccchhHhhhcCC-CCCc-HHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD-LVEIVPEPIDKWQDVGPDHFNILGAYYDAP-ERYA-YTFQNYVFVTR 295 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~-~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp-~r~S-f~~Ql~FLadR 295 (539)
|++|||+|||++||||||++++|+++ +...+ -+.++.||+++ . .+. .++.+..++ ...+ ++.-++|+++|
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~-l~~~g~~v~~trEP~~~--~---ige-~iR~~ll~~~~~~~~~~e~lLfaadR 73 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKER-LEERGIKVVLTREPGGT--P---IGE-KIRELLLNGEEKLSPKAEALLFAADR 73 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEeCCCCC--h---HHH-HHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 68999999999999999999999997 55554 35578999764 2 232 333333333 3343 44445688999
Q ss_pred HHHHHHhcC---CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHH
Q 009257 296 VMQERESSG---GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHK 372 (539)
Q Consensus 296 ~kq~~e~~~---~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~le 372 (539)
.+|..+.+. ..+.+||+||+++|.. .| +|.....+++....++.++. ++..||++|||+++|+++++
T Consensus 74 ~~h~~~~i~pal~~g~vVI~DRy~~Ss~------AY-Qg~~~~~~~~~~~~l~~~~~---~~~~PD~ti~Ldv~~e~al~ 143 (208)
T COG0125 74 AQHLEEVIKPALKEGKVVICDRYVDSSL------AY-QGGGRGLDLDWVLALNEFAP---GGLKPDLTLYLDVPPEVALE 143 (208)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcccHHH------Hh-hhhccCCCHHHHHHHHHhcc---CCCCCCEEEEEeCCHHHHHH
Confidence 998877642 3456788888777663 33 33445566666666665543 24589999999999999999
Q ss_pred HHHHhccc---cccCCcHHHHHHHHHHHHHhhccC
Q 009257 373 RMMLRKRA---EEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 373 RIkkRGRd---~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
|+.+|+.. +|. ...+|++++++.|.+....+
T Consensus 144 R~~~r~~~~~r~E~-~~~~f~~kvr~~Y~~la~~~ 177 (208)
T COG0125 144 RIRKRGELRDRFEK-EDDEFLEKVREGYLELAAKF 177 (208)
T ss_pred HHHhcCCccchhhh-HHHHHHHHHHHHHHHHHhhC
Confidence 99999653 343 34579999999999988654
No 8
>PHA03132 thymidine kinase; Provisional
Probab=99.90 E-value=1.8e-23 Score=229.34 Aligned_cols=168 Identities=23% Similarity=0.278 Sum_probs=126.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCC----------cHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERY----------AYTFQN 289 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~----------Sf~~Ql 289 (539)
++++|+|||+||||||||+++|+++ ++. .+.+++||++.|+++. +++++.+|++..++ .+++|+
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~-lg~--~Vi~t~EP~~~W~~vy---~n~l~~I~~~~~r~~~g~~s~~~ella~Ql 329 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGI-LGD--NVLVFPEPMRYWTEVY---SNCLKEIYKLVKPGKHGKTSTSAKLLACQM 329 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHH-hCC--ceEEEeCCCCchhhcc---ccHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 5899999999999999999999996 532 3568899999999874 46788888766432 234455
Q ss_pred HH------HHHHHHHHH---Hh-cC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCC
Q 009257 290 YV------FVTRVMQER---ES-SG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIP 357 (539)
Q Consensus 290 ~F------LadR~kq~~---e~-~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~P 357 (539)
.| +++|++++. .. .+ ..+.+||+||+++|++.+|..+.|..|.++..+ +..+...+. . ..|
T Consensus 330 ~FA~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e---~~~lL~~~~--~--~~P 402 (580)
T PHA03132 330 KFATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSH---FIQLLSTFR--A--HEG 402 (580)
T ss_pred HHhhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHH---HHHHHHHhc--c--cCC
Confidence 44 468888763 22 11 346799999999999878988888777655332 222222211 1 269
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHh
Q 009257 358 DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENW 400 (539)
Q Consensus 358 DLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEew 400 (539)
|++|||+++++++++||++|+|.+|..++.+||++|++.|..+
T Consensus 403 DLiIyLdv~pe~alkRIkkRgR~~E~~IdleYL~rLre~Y~~l 445 (580)
T PHA03132 403 DVIVLLKLNSEENLRRVKKRGRKEEKGINLTYLKELNWAYHAV 445 (580)
T ss_pred CEEEEEeCCHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888999999999876543
No 9
>PRK07933 thymidylate kinase; Validated
Probab=99.90 E-value=1.2e-22 Score=197.91 Aligned_cols=168 Identities=17% Similarity=0.157 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhc---CCCCCcHHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYD---APERYAYTFQNYVFVTRVM 297 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~---Dp~r~Sf~~Ql~FLadR~k 297 (539)
|+|+|||++|||||||+++|+++ +...+. ...+.||..+ . .+.+..+.+.++. +...+.+..+++|+++|++
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~-L~~~g~~v~~~~~P~~~--~-~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAA-LEARGRSVATLAFPRYG--R-SVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH-HHHCCCeEEEEecCCCC--C-CCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 79999999999999999999997 555543 3457888311 0 0123333333332 2234677888899999999
Q ss_pred HHHHhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHh---cCCCCCCcEEEEEeCCHHHHHH
Q 009257 298 QERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVS---VLPGLIPDGFIYLRASPDTCHK 372 (539)
Q Consensus 298 q~~e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~---~Lp~l~PDLIIYLdaspE~~le 372 (539)
|...+.+ ..+.+||+||+++|+. +|... .+....-..+..|...+.. .+| .||++|||+++|+++++
T Consensus 77 ~~~~I~p~l~~g~~VI~DRy~~S~~-Ayq~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~PDl~i~Ldv~~e~a~~ 148 (213)
T PRK07933 77 ARDELAGLLAAHDVVILDRYVASNA-AYSAA-----RLHQDADGEAVAWVAELEFGRLGLP--VPDLQVLLDVPVELAAE 148 (213)
T ss_pred hHHHHHHHHhCCCEEEECCccchhH-HHhcc-----CCCcccchHHHHHHHHHHHhhcCCC--CCCEEEEecCCHHHHHH
Confidence 8755432 3457899999999984 34211 1110000112223222221 234 79999999999999999
Q ss_pred HHHHhccc--------cccCCcHHHHHHHHHHHHHhhcc
Q 009257 373 RMMLRKRA--------EEGGVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 373 RIkkRGRd--------~E~~i~leYLe~L~e~YEewl~~ 403 (539)
|+.+|++. +|. ..+|+++|++.|.+++..
T Consensus 149 Ri~~R~~~~~~~~~d~~E~--~~~f~~~v~~~Y~~~~~~ 185 (213)
T PRK07933 149 RARRRAAQDADRARDAYER--DDGLQQRTGAVYAELAAQ 185 (213)
T ss_pred HHHhhccccCCcccccccc--cHHHHHHHHHHHHHHHHh
Confidence 99999752 343 579999999999998854
No 10
>PRK13976 thymidylate kinase; Provisional
Probab=99.89 E-value=3.9e-22 Score=194.39 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC-C--ceEEeeCCccccccCCCCccchhHhhhcCCCCCc-HHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR-D--LVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYA-YTFQNYVFVTRVM 297 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~-~--~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~S-f~~Ql~FLadR~k 297 (539)
|+|+|||+||||||||+++|+++ |... + ....+.||++++. + ..++.+..++..+. .+.-++|+++|++
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~-L~~~~g~~~v~~~~eP~~~~~-----g-~~ir~~l~~~~~~~~~~~~llf~a~R~~ 73 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEY-LSDIYGENNVVLTREPGGTSF-----N-ELVRGLLLSLKNLDKISELLLFIAMRRE 73 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHhcCCcceEEeeCCCCCHH-----H-HHHHHHHcCCcCCCHHHHHHHHHHHHHH
Confidence 69999999999999999999997 5542 2 3457889976522 2 34455554433233 3344678999999
Q ss_pred HHHHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHH
Q 009257 298 QERESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (539)
Q Consensus 298 q~~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRI 374 (539)
|..+.+ + ..+.+||+||+++|+. +| +|...+.+.+.+..++.++. .+ .||++|||++||+++++|+
T Consensus 74 ~~~~~I~p~l~~G~~VI~DRy~~S~~-Ay------q~~~~g~~~~~i~~l~~~~~--~~--~PDl~i~Ldv~~e~a~~Ri 142 (209)
T PRK13976 74 HFVKVILPALLQGKIVICDRFIDSTI-AY------QGYGCGVDLSLIRDLNDLVV--DK--YPDITFVLDIDIELSLSRA 142 (209)
T ss_pred HHHHHHHHHHHCCCEEEECCCcCHHH-Hh------ccccCCCCHHHHHHHHHHhh--CC--CCCEEEEEeCCHHHHHHHh
Confidence 876543 2 3467899999998873 44 23333455555666655442 23 7999999999999999999
Q ss_pred HHhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 375 MLRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 375 kkRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
.+|+ +| ..+.+|++++++.|.+++..+
T Consensus 143 ~~~~--~e-~~~~~~l~~v~~~Y~~l~~~~ 169 (209)
T PRK13976 143 DKNG--YE-FMDLEFYDKVRKGFREIVIKN 169 (209)
T ss_pred cccc--hh-cccHHHHHHHHHHHHHHHHhC
Confidence 6543 44 358999999999999998654
No 11
>PRK13973 thymidylate kinase; Provisional
Probab=99.87 E-value=1.1e-20 Score=183.21 Aligned_cols=167 Identities=16% Similarity=0.136 Sum_probs=109.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcC--CCCCcHH-HHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDA--PERYAYT-FQNYVFVT 294 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~D--p~r~Sf~-~Ql~FLad 294 (539)
|++++|+|||+||||||||+++|+++ +...++ ...+.||.+. +.+ ..+..++.+ ...+... ..++|+++
T Consensus 1 m~g~~IviEG~dGsGKtTq~~~l~~~-l~~~g~~~~~~~~p~~~-----~~g-~~ir~~l~~~~~~~~~~~~~~ll~~a~ 73 (213)
T PRK13973 1 MRGRFITFEGGEGAGKSTQIRLLAER-LRAAGYDVLVTREPGGS-----PGA-EAIRHVLLSGAAELYGPRMEALLFAAA 73 (213)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH-HHHCCCeEEEEECCCCC-----chH-HHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 67899999999999999999999997 544433 4567899643 122 344444443 2234433 34568889
Q ss_pred HHHHHHHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHH
Q 009257 295 RVMQERESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (539)
Q Consensus 295 R~kq~~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~l 371 (539)
|.++....+ + ..+.+||+||+++|.. +|. |.-...+.+....+..+.. .. ..||++|||++|+++++
T Consensus 74 r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~-ayq------~~~~~~~~~~~~~l~~~~~-~~--~~PD~vi~Ldv~~e~~~ 143 (213)
T PRK13973 74 RDDHVEEVIRPALARGKIVLCDRFIDSTR-AYQ------GVTGNVDPALLAALERVAI-NG--VMPDLTLILDIPAEVGL 143 (213)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcchhhhHH-HHc------ccccCCCHHHHHHHHHHHh-CC--CCCCEEEEEeCCHHHHH
Confidence 998876532 1 2456888888888773 332 2211222222223322221 22 37999999999999999
Q ss_pred HHHHHhcccc----ccCCcHHHHHHHHHHHHHhhc
Q 009257 372 KRMMLRKRAE----EGGVSLDYLRSLHEKHENWLF 402 (539)
Q Consensus 372 eRIkkRGRd~----E~~i~leYLe~L~e~YEewl~ 402 (539)
+|+.+|++.. ......+|++++.+.|.+...
T Consensus 144 ~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~~ 178 (213)
T PRK13973 144 ERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIAA 178 (213)
T ss_pred HHHHhccCCCccCchhhchHHHHHHHHHHHHHHHH
Confidence 9999997532 112367899999999998663
No 12
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.87 E-value=8.4e-21 Score=179.14 Aligned_cols=166 Identities=17% Similarity=0.110 Sum_probs=108.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCC-ceEEeeCCccccccCCCCccchhHhhhc----CCCCCcHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD-LVEIVPEPIDKWQDVGPDHFNILGAYYD----APERYAYTFQNYVFV 293 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~-~~EvV~EPi~~W~~i~~~g~~lLe~FY~----Dp~r~Sf~~Ql~FLa 293 (539)
|++++|+|||++||||||+++.|+++ +...+ ...++.||.+.|. +. .+..++. ++. .+...++|++
T Consensus 1 ~~~~~I~ieG~~gsGKsT~~~~L~~~-l~~~~~~~~~~~~p~~~~~-----~~-~~~~~~~~~~~~~~--~~~~~~~~~~ 71 (205)
T PRK00698 1 MRGMFITIEGIDGAGKSTQIELLKEL-LEQQGRDVVFTREPGGTPL-----GE-KLRELLLDPNEEMD--DKTELLLFYA 71 (205)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-HHHcCCceeEeeCCCCChH-----HH-HHHHHHhccccCCC--HHHHHHHHHH
Confidence 57899999999999999999999996 43332 2456778865432 22 2223322 222 2333455778
Q ss_pred HHHHHHHHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHH
Q 009257 294 TRVMQERESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTC 370 (539)
Q Consensus 294 dR~kq~~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~ 370 (539)
+|+.++...+ + ..+..+|+||+++|+. +|... . .+.+.+.+..+...+.. .+ .||++|||++|++++
T Consensus 72 ~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~-~~~~~-----~-~~~~~~~~~~l~~~~~~-~~--~pd~~i~l~~~~~~~ 141 (205)
T PRK00698 72 ARAQHLEEVIKPALARGKWVISDRFIDSSL-AYQGG-----G-RGLDIDLLLALNDFALG-GF--RPDLTLYLDVPPEVG 141 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCchhHHH-HHCCC-----C-CCCCHHHHHHHHHHHhC-CC--CCCEEEEEeCCHHHH
Confidence 8988765432 1 2346788999888773 44321 1 12233344444433322 23 799999999999999
Q ss_pred HHHHHHhccc-cccCCcHHHHHHHHHHHHHhhcc
Q 009257 371 HKRMMLRKRA-EEGGVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 371 leRIkkRGRd-~E~~i~leYLe~L~e~YEewl~~ 403 (539)
++|+.+|+.. .......+|++++++.|+.+...
T Consensus 142 ~~Rl~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~ 175 (205)
T PRK00698 142 LARIRARGELDRIEQEGLDFFERVREGYLELAEK 175 (205)
T ss_pred HHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999842 11124789999999999988643
No 13
>PLN02924 thymidylate kinase
Probab=99.86 E-value=2.8e-20 Score=182.86 Aligned_cols=163 Identities=16% Similarity=0.227 Sum_probs=110.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcCCCCC-cHHHHHHHHH
Q 009257 216 PAPKKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERY-AYTFQNYVFV 293 (539)
Q Consensus 216 ~~~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~-Sf~~Ql~FLa 293 (539)
.+++++++|+|||+||||||||++.|+++ +...++ ...+.||... .. .| ..+..++.+.... .++.-++|++
T Consensus 11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~-l~~~g~~v~~~~ep~~~-~~---~g-~~ir~~l~~~~~~~~~~~~llf~a 84 (220)
T PLN02924 11 SVESRGALIVLEGLDRSGKSTQCAKLVSF-LKGLGVAAELWRFPDRT-TS---VG-QMISAYLSNKSQLDDRAIHLLFSA 84 (220)
T ss_pred CcCCCCeEEEEECCCCCCHHHHHHHHHHH-HHhcCCCceeeeCCCCC-Ch---HH-HHHHHHHhCCCCCCHHHHHHHHHH
Confidence 34578899999999999999999999997 555543 3567888521 11 12 2344555432222 3344566889
Q ss_pred HHHHHHHHhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHH
Q 009257 294 TRVMQERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (539)
Q Consensus 294 dR~kq~~e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~l 371 (539)
+|++|...+.+ ..+.+||+||+++|+. +|.. ..| .+.+ |...+...+| .||++|||++||++++
T Consensus 85 dR~~~~~~I~pal~~g~vVI~DRy~~S~~-ayq~---~~g----~~~~----~~~~~~~~~~--~PDlvi~Ld~~~~~a~ 150 (220)
T PLN02924 85 NRWEKRSLMERKLKSGTTLVVDRYSYSGV-AFSA---AKG----LDLE----WCKAPEVGLP--APDLVLYLDISPEEAA 150 (220)
T ss_pred HHHHHHHHHHHHHHCCCEEEEccchhHHH-HHHH---hcC----CCHH----HHHHHHhCCC--CCCEEEEEeCCHHHHH
Confidence 99998754432 3457899999999884 5532 122 2222 3333434455 8999999999999999
Q ss_pred HHHHHhccccccCCcHHHHHHHHHHHHHhh
Q 009257 372 KRMMLRKRAEEGGVSLDYLRSLHEKHENWL 401 (539)
Q Consensus 372 eRIkkRGRd~E~~i~leYLe~L~e~YEewl 401 (539)
+|+..++..+| ..+|++++++.|.++.
T Consensus 151 ~R~~~~~~~~E---~~~~~~rv~~~Y~~la 177 (220)
T PLN02924 151 ERGGYGGERYE---KLEFQKKVAKRFQTLR 177 (220)
T ss_pred HHhccCccccc---cHHHHHHHHHHHHHHh
Confidence 99765443344 5899999999999875
No 14
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.84 E-value=2.5e-19 Score=166.50 Aligned_cols=165 Identities=21% Similarity=0.189 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcCCC--CCcHH-HHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPE--RYAYT-FQNYVFVTRVM 297 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~--r~Sf~-~Ql~FLadR~k 297 (539)
|+|+|||++||||||+++.|+++ +...+. +..+.+|.+.|. .+.+..++.++. .+... ..++++++|..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~-l~~~g~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 73 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAER-LEARGYEVVLTREPGGTPI------GEAIRELLLDPEDEKMDPRAELLLFAADRAQ 73 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEeCCCCCch------HHHHHHHHhccCccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999997 543332 445677754321 256777776542 23333 34456778887
Q ss_pred HHHHhcC---CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHH
Q 009257 298 QERESSG---GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (539)
Q Consensus 298 q~~e~~~---~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRI 374 (539)
+..+... ..+..+|+||+++|+. +|..... + +.. ..+..+... ...+ ..||++|||+++++++++|+
T Consensus 74 ~~~~~~~~~~~~~~~vi~DR~~~s~~-~~~~~~~--~-~~~---~~~~~l~~~-~~~~--~~~~~~i~l~~~~~~~~~R~ 143 (200)
T cd01672 74 HVEEVIKPALARGKIVLSDRFVDSSL-AYQGAGR--G-LGE---ALIEALNDL-ATGG--LKPDLTILLDIDPEVGLARI 143 (200)
T ss_pred HHHHHHHHHHhCCCEEEECCCcchHH-HhCcccc--C-CCH---HHHHHHHHH-HhCC--CCCCEEEEEeCCHHHHHHHH
Confidence 6544321 2457889999999884 5543211 0 111 122222222 2223 37999999999999999999
Q ss_pred HHhcccccc-CCcHHHHHHHHHHHHHhhcc
Q 009257 375 MLRKRAEEG-GVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 375 kkRGRd~E~-~i~leYLe~L~e~YEewl~~ 403 (539)
.+|++..+. ....+|+++++..|+.....
T Consensus 144 ~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~ 173 (200)
T cd01672 144 EARGRDDRDEQEGLEFHERVREGYLELAAQ 173 (200)
T ss_pred HhcCCcchhhhhhHHHHHHHHHHHHHHHHh
Confidence 999875443 45789999999999987643
No 15
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.83 E-value=2.2e-19 Score=169.17 Aligned_cols=177 Identities=17% Similarity=0.141 Sum_probs=112.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhh--hcCCCCCcH-HHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAY--YDAPERYAY-TFQNYVFVT 294 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~F--Y~Dp~r~Sf-~~Ql~FLad 294 (539)
|++++|+|||++||||||++++|+++ ++..+. ..++.+|.+. . .+ ..+..+ +..+..+.. ..+++|+++
T Consensus 1 ~~g~~IvieG~~GsGKsT~~~~L~~~-l~~~g~~v~~~~~~~~~--~---~~-~~i~~~~~~~~~~~~~~~~~~~l~~~~ 73 (195)
T TIGR00041 1 MRGMFIVIEGIDGAGKTTQANLLKKL-LQENGYDVLFTREPGGT--P---IG-EKIRELLLNENDEPLTDKAEALLFAAD 73 (195)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEeCCCCC--h---HH-HHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 46899999999999999999999997 554332 3356677432 1 12 233333 222333433 235567788
Q ss_pred HHHHHHHhc---CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHH
Q 009257 295 RVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (539)
Q Consensus 295 R~kq~~e~~---~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~l 371 (539)
|..+..+.+ ...+.++|+||+++|+. +|. +.....+++.+..+.. .++..+||++|||++|+++++
T Consensus 74 r~~~~~~~i~~~l~~~~~VI~DR~~~s~~-ay~------~~~~~~~~~~~~~l~~----~~~~~~~d~~i~l~~~~~~~~ 142 (195)
T TIGR00041 74 RHEHLEDKIKPALAEGKLVISDRYVFSSI-AYQ------GGARGIDEDLVLELNE----DALGDMPDLTIYLDIDPEVAL 142 (195)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccHHH-HHc------cccCCCCHHHHHHHHH----HhhCCCCCEEEEEeCCHHHHH
Confidence 876554322 12346788899888873 442 2222334443443332 233114999999999999999
Q ss_pred HHHHHhccc-cccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecC
Q 009257 372 KRMMLRKRA-EEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVS 415 (539)
Q Consensus 372 eRIkkRGRd-~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad 415 (539)
+|+..|++. .+.....+|++++++.|++++.+ ..++.+||++
T Consensus 143 ~R~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~id~~ 185 (195)
T TIGR00041 143 ERLRKRGELDREEFEKLDFFEKVRQRYLELADK--EKSIHVIDAT 185 (195)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHcC--CCcEEEEeCC
Confidence 999999863 33345789999999999999865 2344444443
No 16
>PRK13974 thymidylate kinase; Provisional
Probab=99.83 E-value=2.8e-19 Score=173.39 Aligned_cols=166 Identities=17% Similarity=0.111 Sum_probs=113.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc------eEEeeCCccccccCCCCccchhHhhhcCCC----CCcHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL------VEIVPEPIDKWQDVGPDHFNILGAYYDAPE----RYAYTFQ 288 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~------~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~----r~Sf~~Q 288 (539)
|++++|+|||++||||||+++.|+++ +...+. ...++||.+++. + ..++.++.+.. --..+..
T Consensus 1 m~g~~i~~eG~dGsGKsT~~~~l~~~-l~~~g~~~~~~~~~~~~~p~~~~~-----g-~~ir~~l~~~~~~~~~~~~~~~ 73 (212)
T PRK13974 1 MKGKFIVLEGIDGCGKTTQIDHLSKW-LPSSGLMPKGAKLIITREPGGTLL-----G-KSLRELLLDTSKDNSPSPLAEL 73 (212)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhcCccccCCeeeeeeCCCCCch-----H-HHHHHHHcCCCcccCCCHHHHH
Confidence 56899999999999999999999996 444321 235678875521 2 45556554321 1234566
Q ss_pred HHHHHHHHHHHHHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeC
Q 009257 289 NYVFVTRVMQERESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRA 365 (539)
Q Consensus 289 l~FLadR~kq~~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLda 365 (539)
++|+++|++|+...+ + ..+.+||+||+++|. ..| +|+-...+.+.+..+...+.. +..||++|||++
T Consensus 74 llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~------~ay-~g~~r~~~~~~~~~l~~~~~~---~~~pd~~i~ld~ 143 (212)
T PRK13974 74 LLYAADRAQHVSKIIRPALENGDWVISDRFSGST------LAY-QGYGRGLDLELIKNLESIATQ---GLSPDLTFFLEI 143 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhH------HHH-ccccCCCCHHHHHHHHHHHhC---CCCCCEEEEEeC
Confidence 778999999876542 1 234677777766665 333 333334444555555543322 247999999999
Q ss_pred CHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhh
Q 009257 366 SPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWL 401 (539)
Q Consensus 366 spE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl 401 (539)
|++++++|+..|+.+..+....+|+++++..|+.+.
T Consensus 144 ~~~~~~~R~~~R~dD~~e~~~~~y~~~v~~~y~~y~ 179 (212)
T PRK13974 144 SVEESIRRRKNRKPDRIEAEGIEFLERVAEGFALIA 179 (212)
T ss_pred CHHHHHHHHHhcccCchhhhhHHHHHHHHHHHHHHH
Confidence 999999999988765333456899999999999764
No 17
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.81 E-value=6.2e-19 Score=165.77 Aligned_cols=170 Identities=20% Similarity=0.244 Sum_probs=109.3
Q ss_pred EEcCCCCcHHHHHHHHHHHHhccCCce-EEeeCCccccccCCCCccchhHhhhcCCCCCc-HHHHHHHHHHHHHHHHHhc
Q 009257 226 VEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYA-YTFQNYVFVTRVMQERESS 303 (539)
Q Consensus 226 IEG~IGSGKSTLaklLak~~L~a~~~~-EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~S-f~~Ql~FLadR~kq~~e~~ 303 (539)
|||++|||||||+++|+++ +...+.. ..+.+|.+. +.+ ..+..+.......+ ....++|+++|..+....+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~-l~~~~~~~~~~~~~~~~-----~~g-~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I 73 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEA-LKEKGYKVIITFPPGST-----PIG-ELIRELLRSESELSPEAEALLFAADRAWHLARVI 73 (186)
T ss_dssp EEESTTSSHHHHHHHHHHH-HHHTTEEEEEEESSTSS-----HHH-HHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCCCCHHHHHHHHHHH-HHHcCCcccccCCCCCC-----hHH-HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999997 5555433 245666432 112 23444444333443 3556678899977665432
Q ss_pred -C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhcc-
Q 009257 304 -G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKR- 379 (539)
Q Consensus 304 -~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRGR- 379 (539)
+ ..+.+||+||+++|.. +|... -...+.+....+...+. .+ .||++|||+++|+++++|+.+|+.
T Consensus 74 ~~~l~~g~~VI~DRy~~S~l-ay~~~------~~~~~~~~~~~~~~~~~--~~--~PDl~~~Ldv~pe~~~~R~~~r~~~ 142 (186)
T PF02223_consen 74 RPALKRGKIVICDRYIYSTL-AYQGA------KGELDIDWIWRLNKDIF--LP--KPDLTFFLDVDPEEALKRIAKRGEK 142 (186)
T ss_dssp HHHHHTTSEEEEESEHHHHH-HHHTT------TTSSTHHHHHHHHHHHH--TT--E-SEEEEEECCHHHHHHHHHHTSST
T ss_pred HHHHcCCCEEEEechhHHHH-HhCcc------ccCCcchhhhHHHHHhc--CC--CCCEEEEEecCHHHHHHHHHcCCcc
Confidence 1 2457889999888763 44321 12223333344443332 12 899999999999999999999997
Q ss_pred ccccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecC
Q 009257 380 AEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVS 415 (539)
Q Consensus 380 d~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad 415 (539)
..+.....+|+.++++.|.+.+. ..+++.+||++
T Consensus 143 ~~~~~~~~~~~~~~~~~y~~l~~--~~~~~~iid~~ 176 (186)
T PF02223_consen 143 DDEEEEDLEYLRRVREAYLELAK--DPNNWVIIDAS 176 (186)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHH--TTTTEEEEETT
T ss_pred chHHHHHHHHHHHHHHHHHHHHc--CCCCEEEEECC
Confidence 33334579999999999999886 22344444433
No 18
>PRK13975 thymidylate kinase; Provisional
Probab=99.80 E-value=3.3e-18 Score=161.29 Aligned_cols=155 Identities=19% Similarity=0.143 Sum_probs=104.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQER 300 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq~~ 300 (539)
+|+|+|||++||||||+++.|+++ ++.. ...||.+. . . ...+..++.+........+++|+++|+++..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~-l~~~----~~~~~~~~--~---~-g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~ 70 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEK-LNAF----WTCEPTDG--K---I-GKLIREILSGSKCDKETLALLFAADRVEHVK 70 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-hCCC----eeECCCCC--h---H-HHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999996 6643 34566432 1 1 2344555544333455678888899998765
Q ss_pred HhcC-CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhcc
Q 009257 301 ESSG-GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKR 379 (539)
Q Consensus 301 e~~~-~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRGR 379 (539)
+..+ -....+|+||+++|+. +|+. +. ..... |...+...++ .||++|||++|++++++|+.+|++
T Consensus 71 ~i~~~~~~~~vi~DRy~~S~~-a~~~-----~~--g~~~~----~~~~~~~~~~--~pd~vi~L~~~~e~~~~Rl~~r~~ 136 (196)
T PRK13975 71 EIEEDLKKRDVVCDRYVYSSI-AYQS-----VQ--GIDED----FIYSINRYAK--KPDLVFLLDVDIEEALKRMETRDK 136 (196)
T ss_pred HHHHHHcCCEEEEECchhHHH-HHhc-----cc--CCCHH----HHHHHHhCCC--CCCEEEEEcCCHHHHHHHHhccCc
Confidence 4421 1125678888888773 5542 21 11111 2122222233 799999999999999999999986
Q ss_pred ccccCCcHHHHHHHHHHHHHhhc
Q 009257 380 AEEGGVSLDYLRSLHEKHENWLF 402 (539)
Q Consensus 380 d~E~~i~leYLe~L~e~YEewl~ 402 (539)
+.- ...+|++++++.|++++.
T Consensus 137 ~~~--~~~~~~~~~~~~y~~~~~ 157 (196)
T PRK13975 137 EIF--EKKEFLKKVQEKYLELAN 157 (196)
T ss_pred ccc--chHHHHHHHHHHHHHHHh
Confidence 422 257899999999999986
No 19
>PHA03136 thymidine kinase; Provisional
Probab=99.80 E-value=3.1e-19 Score=187.22 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=129.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCC-----CCc---------H
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE-----RYA---------Y 285 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~-----r~S---------f 285 (539)
+-..|.|||++|+||||+++.|.+. .+...-..+++||+..|++++. +.+.+...|+-.+ +.+ .
T Consensus 35 ~~~rvyieG~~gvGKTT~~~~l~~~-~~~~~~vl~v~EPm~yW~~v~~-~~d~i~~Iy~~q~r~~~G~~s~~~a~~~~~~ 112 (378)
T PHA03136 35 RLVLLYLDGPFGTGKTTTAKLLMEM-PDTLAARLYLAEPMAAWRNHFG-GADMIKEINEIQELKARGDIACRDAKAIAAA 112 (378)
T ss_pred eeEEEEEECCCcCCHHHHHHHHHhc-cccCCCeeeecCchHHHHhhcC-cchHHHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence 3468999999999999999999973 3433224478999999999842 4678888885432 111 1
Q ss_pred HHHHHHHHH------HHHHHHHhc--------CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhc
Q 009257 286 TFQNYVFVT------RVMQERESS--------GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSV 351 (539)
Q Consensus 286 ~~Ql~FLad------R~kq~~e~~--------~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~ 351 (539)
..|+.|..- ++....... +....++++||++++..++|..+.|..|.|+..++..+..++ ..
T Consensus 113 ~~Q~~fa~P~~~~~~~~~~~~g~~~~~~~~~~~~pd~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll~~~----~~ 188 (378)
T PHA03136 113 ELQLQFAAPLRIFHHVASNLFGSERCYSAAARGPDDILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALISGI----PD 188 (378)
T ss_pred HHHHHhccHHHHHHHHHHHhhccccccCCCCCCCCCeEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHHhhC----cC
Confidence 156655432 111111100 112357789999999999999999999998876654433222 23
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 352 LPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 352 Lp~l~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
+| .||++|||+++++++++||++|||+.| .++.+||+.|++.|+.|+..-
T Consensus 189 ~p--~pD~IIyL~l~~e~~~~RI~kRgR~~E-~I~~~YL~~L~~~Y~~~~nt~ 238 (378)
T PHA03136 189 EP--HGGNIVIMDLDECEHAERIIARGRPGE-AIDVRFLCALHNIYICFMNTI 238 (378)
T ss_pred CC--CCCEEEEEeCCHHHHHHHHHHcCCCcc-CCCHHHHHHHHHHHHHHHHHH
Confidence 44 799999999999999999999999999 899999999999999997653
No 20
>PHA03138 thymidine kinase; Provisional
Probab=99.76 E-value=3.4e-18 Score=177.35 Aligned_cols=178 Identities=14% Similarity=0.220 Sum_probs=130.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhh-------------cCCCCCcH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYY-------------DAPERYAY 285 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY-------------~Dp~r~Sf 285 (539)
+.-..|-|||++|+||||+++.+.+.+........+++||+..|++++ +.+.+..+| +|+.+|.+
T Consensus 10 ~~~~riYleG~~GvGKTT~~~~~l~~~~~~~~~vl~vpEPm~yWr~v~--~~d~l~~iY~~q~r~~~G~~S~~da~~~~a 87 (340)
T PHA03138 10 MCILRIYLDGAFGIGKTTAAEAFLHGFAINPNRIFFIGEPLMYWRNLA--GDDAICGIYGTQTRRKNGDISDEDAQRLTA 87 (340)
T ss_pred ccEEEEEEECCCCcCHHhHHHHHHHhhhcCCCceEEeeCchHHHHHhc--cccHHHHHHHHhhhhhcccccccchhHHHH
Confidence 556788999999999999998776542222222568999999999984 568999999 88889999
Q ss_pred HHHHHHHHH------HHHHHHHhc-------CCCCCeeee--cceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHh
Q 009257 286 TFQNYVFVT------RVMQERESS-------GGIKPLRLM--ERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVS 350 (539)
Q Consensus 286 ~~Ql~FLad------R~kq~~e~~-------~~~~~~VI~--DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~ 350 (539)
.+|.+|..- +........ +...+.+++ ||+++|..++|..+.|..|.|+..++-... +...
T Consensus 88 ~~Q~~f~tP~~~~~~~~~~~l~~~~~~~~~~~~~~p~~ili~DRHp~SA~vCFP~ary~~G~ls~~~l~~L~----~~~p 163 (340)
T PHA03138 88 HFQGLFCSPHAILHAKILALMDQNPNDLALKFFKEPVAIFLSDRHPIASNICFPISRYLVGDMSPAALPGFL----FALP 163 (340)
T ss_pred HHHHHhhhhHHHHHHHHHHHhccccCccccCCCCCCeEEEEeccccchhhHHHHHHHHHcCCCCHHHHHHHH----HhcC
Confidence 999988432 211111111 112356666 999999999999999999999887764432 2221
Q ss_pred cCCCCCCcEEEEEeCCHHHHHHHHHHhccccccC-Cc---------------HHHHHHHHHHHHHhhccC
Q 009257 351 VLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGG-VS---------------LDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 351 ~Lp~l~PDLIIYLdaspE~~leRIkkRGRd~E~~-i~---------------leYLe~L~e~YEewl~~~ 404 (539)
..+ .--|+|||+.-++| +++||++|+|+.|.- +. ..||+.+++-|++|+...
T Consensus 164 ~~~-~g~nLVv~~l~~~E-~~~RL~~R~R~gE~~D~~~l~alrnvY~~L~NT~~yL~~~~~w~~dW~~l~ 231 (340)
T PHA03138 164 AEP-EGTNLIVCTVSLPN-HLSRISKRARPGEIIDLPFILVLRNVYIMLINTIIFLKAKNDWHADWFKLP 231 (340)
T ss_pred CCC-CCCcEEEEeCCcHH-HHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHhcChHhHHHhhCc
Confidence 111 13478888886566 999999999999873 44 789999999999997643
No 21
>PHA03134 thymidine kinase; Provisional
Probab=99.54 E-value=4.4e-14 Score=146.83 Aligned_cols=173 Identities=18% Similarity=0.247 Sum_probs=124.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCC-----Cc--------HH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPER-----YA--------YT 286 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r-----~S--------f~ 286 (539)
.-..|-|||..|+||||+++.|+.. .........++||+..|+.++ +++.+...|+..++ .+ ..
T Consensus 12 ~~~rvYlDG~~GvGKTT~~~~l~~~-~~~~~~vl~~pEPM~YWr~~f--~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~ 88 (340)
T PHA03134 12 RIVRIYLDGAYGIGKSTTGRVMASA-ASGGGPTLYFPEPMAYWRTLF--ETDVVSGIYDAQNRKQQGSLAAEDAAGITAH 88 (340)
T ss_pred cEEEEEEeCCCcCCHHHHHHHHHHh-ccCCCceEEecCcHHHHHHHh--hhhHHHHHHHHHhHHhccCcchhHHHHHHHH
Confidence 4468899999999999999999974 122222457899999999985 45677777753321 11 12
Q ss_pred HHHHHHHH------HHHHHHH---hc--CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCC
Q 009257 287 FQNYVFVT------RVMQERE---SS--GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGL 355 (539)
Q Consensus 287 ~Ql~FLad------R~kq~~e---~~--~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l 355 (539)
.|+.|..- |...... .. +....++|+||+++|...+|..+.|..|.++..++ ..+ ...+|..
T Consensus 89 ~Q~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~---~~l----~~~~p~~ 161 (340)
T PHA03134 89 YQARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACAL---LAL----AATLPRE 161 (340)
T ss_pred HHHHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHH---HHH----HHhCCCC
Confidence 56654432 2221111 01 11235788999999999899999999999987665 111 2234422
Q ss_pred CC-cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhcc
Q 009257 356 IP-DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 356 ~P-DLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~ 403 (539)
.| |.+||++++++++++||++|+|..|. ++.+||..|+..|..++..
T Consensus 162 ~pG~niVl~~l~~~e~~~Rl~~R~R~gE~-id~~yL~~l~n~Y~~l~nT 209 (340)
T PHA03134 162 PPGGNLVVTTLNPDEHLRRLRARARIGEQ-IDAKLIAALRNVYAMLVNT 209 (340)
T ss_pred CCCCeEEEEeCCHHHHHHHHHHcCCCccc-cCHHHHHHHHHHHHHHHHH
Confidence 35 89999999999999999999999997 9999999999999987654
No 22
>PHA03135 thymidine kinase; Provisional
Probab=99.51 E-value=3.6e-14 Score=147.68 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=114.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCC-----Cc--------HH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPER-----YA--------YT 286 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r-----~S--------f~ 286 (539)
.-..|-|||++|+||||+++.|++. ........+++||+..|+.++ .+.+...|+-..+ .+ ..
T Consensus 9 ~~~rIYlDG~~GvGKTT~~~~l~~~-~~~~~~vl~vpEPM~YWr~~f---~d~i~~Iy~tq~r~~~G~ls~~~as~~~~~ 84 (343)
T PHA03135 9 QLIRVYLDGPFGIGKTSMLNEMPDH-SPDGVPVLKVFEPMKYWRCYF---TDLVVAVNDTPERRRRGELSLFQSSMIVAA 84 (343)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHh-cCCCCceEEecCcHHHHHHHH---HHHHHHHHHHHhhhhcCCcchhhccHHHHH
Confidence 4468999999999999999999984 222212567899999999874 2455555543211 11 11
Q ss_pred HHHHHH------HHHHHHHHH-hc---CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCC
Q 009257 287 FQNYVF------VTRVMQERE-SS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLI 356 (539)
Q Consensus 287 ~Ql~FL------adR~kq~~e-~~---~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~ 356 (539)
.|+-|. .+++..... .. +....++|+||+++|...+|..+.|..|.+ .+..|..++..+-...|+
T Consensus 85 ~Q~kfatP~~~~~~~l~~~~~~~~~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~l---s~~~l~sl~~~lp~~~pG-- 159 (343)
T PHA03135 85 LQAKFADPYLVFHERLSSKCHGKIGTRGNPSLILILDRHPVSATVCFPIARHLLGDC---SLEMLISSIIRLPLEPPG-- 159 (343)
T ss_pred HHHHhcchHHHHHHHHHHHhcccCCCCCCCCceEEEecCCCCCceeeehhhcccCCC---CHHHHHHHHHhCCcCCCC--
Confidence 333322 233321111 11 112357889999999988998776666654 455555555443222232
Q ss_pred CcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhcc
Q 009257 357 PDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 357 PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~ 403 (539)
.+++|+...+++++++||++|+|..|. .+.+||..|+..|..++..
T Consensus 160 ~niVl~~L~~~~E~~rRl~~R~R~gE~-~d~~yL~aL~n~Y~~l~nT 205 (343)
T PHA03135 160 CNLVITILPDEKEHVNRLSSRNRPGET-TDRNMLRALNAVYSSLVDT 205 (343)
T ss_pred CeEEEEECCCHHHHHHHHHHcCCCccc-cCHHHHHHHHHHHHHHHHH
Confidence 245555555699999999999999998 4999999999999977543
No 23
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.39 E-value=3.4e-12 Score=123.33 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=101.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEE--eeCCccccccCCCCccchhHhhhcCCCCC-cHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEI--VPEPIDKWQDVGPDHFNILGAYYDAPERY-AYTFQNYVFVT 294 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~Ev--V~EPi~~W~~i~~~g~~lLe~FY~Dp~r~-Sf~~Ql~FLad 294 (539)
.++.+|++||.+.|||||++..|.+. +..... .+. .+|-- + .+ .+++..++.+.... .-...++|-++
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~-l~~~~~~~~l~~FP~Rs-t--~i----Gk~i~~YL~k~~dl~d~~iHLlFSAn 74 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVES-LIPGLDPAELLRFPERS-T--SI----GKLIDGYLRKKSDLPDHTIHLLFSAN 74 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHH-HHhccChHHhhhcchhc-c--cc----cHHHHHHHHhccCCcHHHHHHHhccc
Confidence 57889999999999999999999886 332210 011 11110 0 11 24555555543321 23455677889
Q ss_pred HHHHHHHhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHH
Q 009257 295 RVMQERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHK 372 (539)
Q Consensus 295 R~kq~~e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~le 372 (539)
|+++...+.. ..+..+|+||+.||.. +|+.+ .| .+++...++ ...|| +||+++||+++|+.+ .
T Consensus 75 Rwe~~~~i~e~l~kg~~~ivDRY~~SGv-AyS~A---Kg----l~~dWc~~p----d~gL~--KPDlvlfL~v~p~~~-a 139 (208)
T KOG3327|consen 75 RWEHVSLIKEKLAKGTTLIVDRYSFSGV-AYSAA---KG----LDLDWCKQP----DVGLP--KPDLVLFLDVSPEDA-A 139 (208)
T ss_pred hhhHHHHHHHHHhcCCeEEEecceecch-hhhhh---cC----CCcchhhCC----ccCCC--CCCeEEEEeCCHHHH-H
Confidence 9987644321 2346799999999996 67653 23 333222222 22366 999999999999994 3
Q ss_pred HHHHhccccccCCcHHHHHHHHHHHHHhh
Q 009257 373 RMMLRKRAEEGGVSLDYLRSLHEKHENWL 401 (539)
Q Consensus 373 RIkkRGRd~E~~i~leYLe~L~e~YEewl 401 (539)
|... +..|...+.++++++-..|.+..
T Consensus 140 ~rgg--fG~Erye~v~fqekv~~~~q~l~ 166 (208)
T KOG3327|consen 140 RRGG--FGEERYETVAFQEKVLVFFQKLL 166 (208)
T ss_pred HhcC--cchhHHHHHHHHHHHHHHHHHHH
Confidence 3333 44566667899999999999987
No 24
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=99.28 E-value=2.8e-11 Score=123.44 Aligned_cols=163 Identities=21% Similarity=0.295 Sum_probs=106.0
Q ss_pred cCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCC-----CCc--------HHHHHHHHHH
Q 009257 228 GNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE-----RYA--------YTFQNYVFVT 294 (539)
Q Consensus 228 G~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~-----r~S--------f~~Ql~FLad 294 (539)
|..|+||||+++.|++. .....-..+++||+..|+.++ +.+.+...|+-.+ +.+ ...|+.|..-
T Consensus 1 G~~GvGKTT~~~~l~~~-~~~~~~vl~~pEPM~YWr~~f--~~d~i~~Iy~~~~r~~~G~~s~~~as~~~~~~Q~~fatP 77 (281)
T PF00693_consen 1 GAMGVGKTTTLKALAEA-LPAGDPVLYFPEPMAYWRTVF--GTDVIKGIYEAQKRKDRGEISSEEASAIMASCQMKFATP 77 (281)
T ss_dssp SSTTSSHHHHHHHHHHC-CTSSCCEEEE---HHHHHTCS--SSSHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHc-cCCCCCeEEecccHHHHHHHh--hHHHHHHHHHHHhHhhccCcCccHHHHHHHHHHHHhcch
Confidence 88999999999999985 432333567899999999985 4677888884321 121 2357766543
Q ss_pred HHHHHHHhc--------C----CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCC-CCCcEEE
Q 009257 295 RVMQERESS--------G----GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPG-LIPDGFI 361 (539)
Q Consensus 295 R~kq~~e~~--------~----~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~-l~PDLII 361 (539)
..-...... . ....++|+||+++|...+|.-+.|..|.|+-.++ ...+ ..+|. ...+.+|
T Consensus 78 ~~~~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~~l------i~ll-a~~p~~~pG~niV 150 (281)
T PF00693_consen 78 YLALHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFEDL------ISLL-ATFPPEPPGTNIV 150 (281)
T ss_dssp HHHHHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HHHH------HHHH-TTS----TTEEEE
T ss_pred HHHHHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHHHH------HHHH-HhCCCCCCCCEEE
Confidence 222111111 1 1234678999999998899999999998875543 2222 22432 2456788
Q ss_pred EEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhh
Q 009257 362 YLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWL 401 (539)
Q Consensus 362 YLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl 401 (539)
.+++++++-++||++|+|+.|. ++..|+..|+..|...+
T Consensus 151 l~~L~~~E~~rRl~~R~R~gE~-vd~~~l~~Lr~~Y~~l~ 189 (281)
T PF00693_consen 151 LMTLPEEEHLRRLKARGRPGER-VDLNYLRALRNVYHALV 189 (281)
T ss_dssp EEE--HHHHHHHHHHTSTTT-S---HHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHcCCCccc-cCHHHHHHHHHHHHHHH
Confidence 8999999999999999999996 99999999999998654
No 25
>PRK08233 hypothetical protein; Provisional
Probab=99.19 E-value=9.8e-10 Score=101.84 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccc---cc--CCcHHHHHHHHHHHHHhhccC
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAE---EG--GVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~---E~--~i~leYLe~L~e~YEewl~~~ 404 (539)
.+|++|||++|++++++|+.+|.... +. ....+|+......|.+|+.+.
T Consensus 97 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 150 (182)
T PRK08233 97 FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTV 150 (182)
T ss_pred HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcC
Confidence 46999999999999999987775321 11 125678888888888887553
No 26
>PHA03133 thymidine kinase; Provisional
Probab=99.19 E-value=2.2e-10 Score=120.23 Aligned_cols=172 Identities=20% Similarity=0.254 Sum_probs=122.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCC------c-------H
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERY------A-------Y 285 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~------S-------f 285 (539)
..-..|-|||..|+||||+++.+... ++...-..+++||+..|+.++ +.+.+...|+...+. + -
T Consensus 38 ~~~~rvYlDG~~GvGKTTt~~~l~~a-~~~~~~vl~~pEPM~YWr~~f--~sd~i~~IY~tq~r~~~GeiS~~~A~~~~~ 114 (368)
T PHA03133 38 SALLRIYVDGPHGLGKTTTAAALAAA-LGRRDDIEYVPEPMAYWQVLG--GSETIARIFDAQHRLDRGEISAGEAAVAMT 114 (368)
T ss_pred ceEEEEEEeCCCcCCHHHHHHHHHHh-hCCCCCeEEecCcHHHHHHHh--hhhHHHHHHHHHHHHhccCcchhhhhhHHH
Confidence 45578999999999999999877775 555444668999999999984 456777777533221 1 1
Q ss_pred HHHHHHHHH------HHHHHHH-h-cC------CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhc
Q 009257 286 TFQNYVFVT------RVMQERE-S-SG------GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSV 351 (539)
Q Consensus 286 ~~Ql~FLad------R~kq~~e-~-~~------~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~ 351 (539)
..|+.|..- ++..... . .+ ....++|+||.++|...+|..+.|..|.|+..++ +..+ .-
T Consensus 115 s~Q~kFatPy~~~~~~~~~~~g~~~~~~~~~~p~~d~~lifDRHPlAa~vcFPlary~~G~ls~~~l------isll-a~ 187 (368)
T PHA03133 115 SAQVTMSTPYAVTEAAVAPHIGGELPPGHAPHPNIDLTLVFDRHPVAPLLCYPAARYLMGSLSLPAV------LSFA-AL 187 (368)
T ss_pred HHHHHhcChHHHHHHHHHHHhccCCCCCCCCCCCCCeEEeecCCcCchhhhhhHHHHHcCCCCHHHH------HHHH-Hh
Confidence 246554322 2221111 0 01 1145788999999998899999999998875543 2222 22
Q ss_pred CC-CCCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhh
Q 009257 352 LP-GLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWL 401 (539)
Q Consensus 352 Lp-~l~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl 401 (539)
+| ...-|.+|.++++.++-++||++|+|..|. ++..||..|+..|.-.+
T Consensus 188 lp~~~pG~NiVl~~L~~~E~~~RL~~R~R~gE~-~D~~~l~alrnvY~~l~ 237 (368)
T PHA03133 188 LPPTTPGTNLVLGALPEAAHAERLAQRQRPGER-LDLAMLSAIRRVYDMLG 237 (368)
T ss_pred CCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccc-cCHHHHHHHHHHHHHHH
Confidence 43 124579999999999999999999999997 89999999999998553
No 27
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.03 E-value=1.4e-08 Score=94.92 Aligned_cols=46 Identities=7% Similarity=0.120 Sum_probs=33.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhccccc-cCCcHHHHHHHHHHHHHh
Q 009257 355 LIPDGFIYLRASPDTCHKRMMLRKRAEE-GGVSLDYLRSLHEKHENW 400 (539)
Q Consensus 355 l~PDLIIYLdaspE~~leRIkkRGRd~E-~~i~leYLe~L~e~YEew 400 (539)
..||++|||++|++++++|+.+|+.... ...+.+++++....|.+.
T Consensus 102 ~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~ 148 (183)
T TIGR01359 102 VNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQ 148 (183)
T ss_pred CCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHH
Confidence 3699999999999999999999975311 112456666655666654
No 28
>PRK02496 adk adenylate kinase; Provisional
Probab=98.94 E-value=6.4e-08 Score=91.23 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=34.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHH
Q 009257 355 LIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHEN 399 (539)
Q Consensus 355 l~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEe 399 (539)
..||++|+|+++++++.+|+..|+|... ..+++++..+.|++
T Consensus 106 ~~~~~vi~l~~~~~~~~~Rl~~R~~~dd---~~~~~~~r~~~y~~ 147 (184)
T PRK02496 106 QSGERVVNLDVPDDVVVERLLARGRKDD---TEEVIRRRLEVYRE 147 (184)
T ss_pred CCCCEEEEEeCCHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHH
Confidence 3689999999999999999999987422 45677777777776
No 29
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.92 E-value=3.7e-08 Score=91.75 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=32.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccc--ccCCcHHHHHHHHHHHHH
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAE--EGGVSLDYLRSLHEKHEN 399 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~--E~~i~leYLe~L~e~YEe 399 (539)
.||++|||++|++++++|+.+|++.. .......+.+++...|+.
T Consensus 106 ~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~ 151 (188)
T TIGR01360 106 PPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKA 151 (188)
T ss_pred CCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999887421 112234566777666654
No 30
>PRK04040 adenylate kinase; Provisional
Probab=98.92 E-value=6.7e-08 Score=93.17 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=42.6
Q ss_pred CCcEEEEEeCCHHHHHHHHH---HhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 356 IPDGFIYLRASPDTCHKRMM---LRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIk---kRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
.||.+|||+++|+++++|+. .|+|+.|....++|+..++..|..|+..+
T Consensus 110 ~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~ 161 (188)
T PRK04040 110 NPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVL 161 (188)
T ss_pred CCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999987 48888887778999999999998877544
No 31
>PRK14532 adenylate kinase; Provisional
Probab=98.91 E-value=7.9e-08 Score=90.73 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=33.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhccc--cccCCcHHHHHHHHHHHHHh
Q 009257 355 LIPDGFIYLRASPDTCHKRMMLRKRA--EEGGVSLDYLRSLHEKHENW 400 (539)
Q Consensus 355 l~PDLIIYLdaspE~~leRIkkRGRd--~E~~i~leYLe~L~e~YEew 400 (539)
..||++|||++|++++++|+..|... -.......+.++++..|+..
T Consensus 105 ~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~ 152 (188)
T PRK14532 105 QKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQT 152 (188)
T ss_pred CCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999988521 11122456778887777664
No 32
>PRK06217 hypothetical protein; Validated
Probab=98.90 E-value=3.8e-08 Score=93.22 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|.|..||||||+++.|++. ++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~-l~~~ 28 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER-LDIP 28 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-cCCc
Confidence 56999999999999999999996 6654
No 33
>PLN02200 adenylate kinase family protein
Probab=98.88 E-value=1.1e-07 Score=94.77 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=56.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccc-cccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecCCCCcccCCCCCccccccee
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRA-EEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVF 434 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd-~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~~~~~~d~~~~pe~~d~V~ 434 (539)
.||++|||+++++++++|+.+|+.. .+ -+.+.+++..+.|.+.....-
T Consensus 145 ~pd~vi~Ld~~~e~~~~Rl~~R~~~r~d--d~~e~~~~Rl~~y~~~~~pv~----------------------------- 193 (234)
T PLN02200 145 EPNVVLFFDCPEEEMVKRVLNRNQGRVD--DNIDTIKKRLKVFNALNLPVI----------------------------- 193 (234)
T ss_pred CCCEEEEEECCHHHHHHHHHcCcCCCCC--CCHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 6999999999999999999998532 22 245666666677766533210
Q ss_pred eecCcccccccc-CCceEEEcCCCCCCcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 009257 435 YLDGPHMHSSIQ-KVPALVLDCEPNIDFSRDIDLKRQYARQVAEFFEFVKKKKE 487 (539)
Q Consensus 435 ~~~~~h~~~~~~-~iPvLviD~d~~~DF~~d~~~~e~i~~~I~~fl~~v~~~~~ 487 (539)
+... .--+++||++. +.+++.+.|...+......+|
T Consensus 194 --------~~y~~~~~~~~IDa~~---------~~eeV~~~v~~~l~~~~~~~~ 230 (234)
T PLN02200 194 --------DYYSKKGKLYTINAVG---------TVDEIFEQVRPIFAACEAMKE 230 (234)
T ss_pred --------HHHHhcCCEEEEECCC---------CHHHHHHHHHHHHHHcCCccc
Confidence 0000 01257889875 567788888888877665555
No 34
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.83 E-value=1.6e-07 Score=93.02 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=32.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHh
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENW 400 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEew 400 (539)
.+..+|||++|+++|++|..+|++. .+.+++..+.+.|+..
T Consensus 95 ~~~~~I~l~~p~e~~~~Rn~~R~~~----~~~~~i~~l~~r~e~p 135 (249)
T TIGR03574 95 KNYIIIYLKAPLDTLLRRNIERGEK----IPNEVIKDMYEKFDEP 135 (249)
T ss_pred CCEEEEEecCCHHHHHHHHHhCCCC----CCHHHHHHHHHhhCCC
Confidence 5789999999999999999988753 3456677777776654
No 35
>PRK13808 adenylate kinase; Provisional
Probab=98.76 E-value=1.7e-07 Score=98.23 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|-|++||||||+++.|++. +++.
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~-ygl~ 27 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQ-YGIV 27 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 46899999999999999999996 5654
No 36
>PRK13949 shikimate kinase; Provisional
Probab=98.76 E-value=1.5e-07 Score=88.99 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=36.1
Q ss_pred CcEEEEEeCCHHHHHHHHHH--hccccccCC-cHHHHHHHHHHHHHhhccCC
Q 009257 357 PDGFIYLRASPDTCHKRMML--RKRAEEGGV-SLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 357 PDLIIYLdaspE~~leRIkk--RGRd~E~~i-~leYLe~L~e~YEewl~~~~ 405 (539)
-+++|||++|++++++|++. |+|+.+... ..+|++.+++.|+++..-|+
T Consensus 94 ~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~ 145 (169)
T PRK13949 94 SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYR 145 (169)
T ss_pred CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999984 467766433 35566677777777765443
No 37
>PRK06762 hypothetical protein; Provisional
Probab=98.75 E-value=8e-08 Score=88.81 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++|+|.|++||||||+++.|+++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999986
No 38
>PRK14531 adenylate kinase; Provisional
Probab=98.74 E-value=2.3e-07 Score=87.99 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhccc
Q 009257 355 LIPDGFIYLRASPDTCHKRMMLRKRA 380 (539)
Q Consensus 355 l~PDLIIYLdaspE~~leRIkkRGRd 380 (539)
..||.+|+|++|++++.+|+..|+|.
T Consensus 106 ~~~~~vi~l~~~~~~l~~Rl~~R~r~ 131 (183)
T PRK14531 106 QPIEAVVLLELDDAVLIERLLARGRA 131 (183)
T ss_pred CCCCeEEEEECCHHHHHHHhhcCCCC
Confidence 36899999999999999999999884
No 39
>PRK14527 adenylate kinase; Provisional
Probab=98.66 E-value=5.3e-07 Score=85.87 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.++++|+|.|++||||||+++.|++. +++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~-~~~~ 33 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQE-LGLK 33 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 36789999999999999999999986 5544
No 40
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.66 E-value=9e-08 Score=92.09 Aligned_cols=56 Identities=21% Similarity=0.128 Sum_probs=38.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccccc---CCcHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEEG---GVSLDYLRSLHEKHENWLFPFESGNHGVLAVSK 416 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E~---~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~ 416 (539)
.+|++|.|+++|+++.+|++.||.+.|+ ++..+.+. -.|.+.++.+ +.+..+|...
T Consensus 82 ~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~---vi~~EA~E~~--~~v~evdtt~ 140 (180)
T COG1936 82 DCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILD---VILIEAVERF--EAVIEVDTTN 140 (180)
T ss_pred CCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH---HHHHHHHHhc--CceEEEECCC
Confidence 4799999999999999999999998776 33344333 3344444333 3455666544
No 41
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.62 E-value=2.8e-07 Score=88.67 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc-----cccccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecCCCCcccCCCCCcccc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRK-----RAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIR 430 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRG-----Rd~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~~~~~~d~~~~pe~~ 430 (539)
..|++||++++.+++++|...|. ++.|+ ....|..++...|+.++.+..
T Consensus 125 ~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~-~~~~~~~~~~~~~~~~i~~~~------------------------- 178 (209)
T PRK05480 125 LMDIKIFVDTPLDIRLIRRLKRDVNERGRSLES-VINQYLSTVRPMHLQFIEPSK------------------------- 178 (209)
T ss_pred hhceeEEEeCChhHHHHHHHhhcchhcCCCHHH-HHHHHHHhhhhhHHhhccHhh-------------------------
Confidence 46999999999999999977664 44343 334677777888888876543
Q ss_pred cceeeecCccccccccCCceEEEcCCCCCCcccCHHHHHHHHHHHHHHHH
Q 009257 431 DRVFYLDGPHMHSSIQKVPALVLDCEPNIDFSRDIDLKRQYARQVAEFFE 480 (539)
Q Consensus 431 d~V~~~~~~h~~~~~~~iPvLviD~d~~~DF~~d~~~~e~i~~~I~~fl~ 480 (539)
...-++|+-+ .+|+.+.+.+.++|..+++
T Consensus 179 ----------------~~AD~vI~~~-----~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 179 ----------------RYADIIIPEG-----GKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred ----------------cceeEEecCC-----CcchHHHHHHHHHHHHHhh
Confidence 1223556553 2467788999999988764
No 42
>PRK03839 putative kinase; Provisional
Probab=98.61 E-value=9.6e-07 Score=82.96 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|.|.+||||||+++.|++. ++..
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~-~~~~ 27 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEK-LGYE 27 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 57999999999999999999996 5644
No 43
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.61 E-value=5.6e-07 Score=89.24 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHH--HHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNY--VFVTRVMQE 299 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~--FLadR~kq~ 299 (539)
++|.+.|.+||||||+++.|++. |.... +.++. .+..++..|..|.. ....-|.| +...+....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~-L~~~i-~~vi~-----------l~kdy~~~i~~DEs-lpi~ke~yres~~ks~~rl 67 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE-LRQEI-WRVIH-----------LEKDYLRGILWDES-LPILKEVYRESFLKSVERL 67 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH-HHHhh-hhccc-----------cchhhhhheecccc-cchHHHHHHHHHHHHHHHH
Confidence 58999999999999999999996 55431 21110 11123444443321 11111222 122222222
Q ss_pred HHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhcc
Q 009257 300 RESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKR 379 (539)
Q Consensus 300 ~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRGR 379 (539)
..+.- .+.+||.|-.= -|..+-| +++....+ + ..+-.+|||.+++++|++|-..||.
T Consensus 68 ldSal-kn~~VIvDdtN-----YyksmRr--------------qL~ceak~-~--~tt~ciIyl~~plDtc~rrN~erge 124 (261)
T COG4088 68 LDSAL-KNYLVIVDDTN-----YYKSMRR--------------QLACEAKE-R--KTTWCIIYLRTPLDTCLRRNRERGE 124 (261)
T ss_pred HHHHh-cceEEEEeccc-----HHHHHHH--------------HHHHHHHh-c--CCceEEEEEccCHHHHHHhhccCCC
Confidence 22221 13566654221 1222222 22222222 2 2688999999999999988866665
Q ss_pred ccccCCcHHHHHHHHHHHHH
Q 009257 380 AEEGGVSLDYLRSLHEKHEN 399 (539)
Q Consensus 380 d~E~~i~leYLe~L~e~YEe 399 (539)
+. +.+-++++.+.||+
T Consensus 125 pi----p~Evl~qly~RfEe 140 (261)
T COG4088 125 PI----PEEVLRQLYDRFEE 140 (261)
T ss_pred CC----CHHHHHHHHHhhcC
Confidence 43 45566777666654
No 44
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.60 E-value=2.2e-06 Score=78.56 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+++.|.|.|+.||||||+++.|++. ++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~-l~~~ 31 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR-LGYD 31 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH-hCCC
Confidence 4679999999999999999999996 6654
No 45
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.52 E-value=8.5e-07 Score=79.10 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEE 382 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E 382 (539)
.+-.+|+|+++.+++.+|+..|++..+
T Consensus 97 ~~~~~v~l~~~~~~~~~R~~~R~~~~~ 123 (143)
T PF13671_consen 97 YPVRVVYLDAPEETLRERLAQRNREGD 123 (143)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTHCCCT
T ss_pred CeEEEEEEECCHHHHHHHHHhcCCccc
Confidence 457899999999999999999998654
No 46
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.51 E-value=1.2e-06 Score=81.04 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=65.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCC---CC---cHHHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE---RY---AYTFQNYVFVTRVM 297 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~---r~---Sf~~Ql~FLadR~k 297 (539)
|+|.|..|+|||||++.|+++ + +.+++|+. ..+++..+.... .+ ...+|..++..+.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~--g----~~~v~E~a----------r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 65 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR--G----YPVVPEYA----------REIIEEGGRRDRDTLPWEDDLLAFQEGILEQQLE 65 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH--T-----EEE--TT----------HHHHHHSSSS-TTSS-TT-THHHHHHH--HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc--C----CeEEeecH----------HHHHHHhccccchhhhhcchHHHHHHHHHHHHHH
Confidence 899999999999999999985 4 33667773 123333222111 11 12344444444444
Q ss_pred HHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 009257 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLR 377 (539)
Q Consensus 298 q~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkR 377 (539)
...... ...++|+||+++.. .+|+.... +- ...+ +.... . . ...|++|+|...++. ..-..|
T Consensus 66 ~~~~~~--~~~~vi~Dr~~~d~-~aY~~~~~--~~-~~~~------l~~~~-~-~--~~yd~v~~l~~~~~~--~~D~~R 127 (163)
T PF13521_consen 66 AEASAK--SSDVVICDRGPLDT-LAYSEFYF--GD-YPEE------LEREA-R-L--SRYDLVFLLPPDPPW--EQDGVR 127 (163)
T ss_dssp HHHHHH---SSEEEESS-HHHH-HHHHHHHH--S----HH------HHHHH-H-H--S--SEEEEEE-------------
T ss_pred HHHhhc--CCCcEEEeCChHHH-HHHHHHhc--Cc-chHH------HHHHH-H-h--CCCCEEEEeCCcccc--CCCCCC
Confidence 443321 34789999999854 46765432 11 1111 11111 1 1 257999999876633 222222
Q ss_pred ccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 378 KRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 378 GRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
. .+.++...+++.+.+++...
T Consensus 128 ~------~~~~~r~~~~~~~~~~l~~~ 148 (163)
T PF13521_consen 128 P------EDPEERERIDELLKELLERH 148 (163)
T ss_dssp -----------SHHHHHHHHHHHHHGG
T ss_pred C------CCHHHHHHHHHHHHHHHHHC
Confidence 1 13445667777777777654
No 47
>PRK14528 adenylate kinase; Provisional
Probab=98.50 E-value=1.4e-06 Score=83.39 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.|.|.|++||||||+++.|+++ ++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~-~~~~ 28 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER-LSIP 28 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 35899999999999999999986 5654
No 48
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.48 E-value=1.9e-06 Score=83.65 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=31.7
Q ss_pred CCcEEEEEeCC--HHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhh
Q 009257 356 IPDGFIYLRAS--PDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWL 401 (539)
Q Consensus 356 ~PDLIIYLdas--pE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl 401 (539)
.||+++++.++ .+++.+|+.+|+.+. ..++.+++...|+++.
T Consensus 122 ~pd~~~if~~pps~e~l~~Rl~~R~~~~----~~~~~~Rl~~~~~e~~ 165 (206)
T PRK14738 122 VPEAVFIFLAPPSMDELTRRLELRRTES----PEELERRLATAPLELE 165 (206)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHh
Confidence 57888888876 457899999998542 2467888988887754
No 49
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.46 E-value=2e-07 Score=92.59 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=40.6
Q ss_pred CCcEEEEEeCCHHHHHHH-----HHHhccccccCCcHHHHHHHHHHHHHhhccCC
Q 009257 356 IPDGFIYLRASPDTCHKR-----MMLRKRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leR-----IkkRGRd~E~~i~leYLe~L~e~YEewl~~~~ 405 (539)
..|+-||++++.++++.| +..|||+.|. +-.+|...++..|++++++.+
T Consensus 127 ~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~-vi~qy~~~vkp~~~~fIeptk 180 (218)
T COG0572 127 LMDLKIFVDTDADVRLIRRIKRDVQERGRDLES-VIEQYVKTVRPMYEQFIEPTK 180 (218)
T ss_pred hcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHH-HHHHHHHhhChhhhhccCccc
Confidence 469999999999999876 4567888774 567899899999999998754
No 50
>PRK14530 adenylate kinase; Provisional
Probab=98.46 E-value=4e-06 Score=81.47 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.++.|+|.|++||||||+++.|++. +++.
T Consensus 1 ~~~~~I~i~G~pGsGKsT~~~~La~~-~~~~ 30 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQSSNLAEE-FGVE 30 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 44568999999999999999999986 5643
No 51
>PRK08356 hypothetical protein; Provisional
Probab=98.45 E-value=5e-06 Score=79.75 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=27.6
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCC-cHHHHHHHHH
Q 009257 358 DGFIYLRASPDTCHKRMMLRKRAEEGGV-SLDYLRSLHE 395 (539)
Q Consensus 358 DLIIYLdaspE~~leRIkkRGRd~E~~i-~leYLe~L~e 395 (539)
..+|||+++++++.+|+.+|++..+... +.+.+.++.+
T Consensus 116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~ 154 (195)
T PRK08356 116 GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDE 154 (195)
T ss_pred CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 5899999999999999999986533222 4555555543
No 52
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.42 E-value=7.9e-06 Score=79.38 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|.|++||||||+++.|+++ +++.
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~-~~~~ 27 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEK-YGIP 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 56999999999999999999986 5654
No 53
>PRK08118 topology modulation protein; Reviewed
Probab=98.42 E-value=5.1e-07 Score=85.30 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.|+|-|+.||||||+++.|++. ++..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~-l~~~ 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK-LNIP 28 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 36899999999999999999986 5644
No 54
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.41 E-value=4.5e-06 Score=78.17 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..++++|+|+|++||||||+++.|++.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999986
No 55
>PLN02842 nucleotide kinase
Probab=98.41 E-value=4.8e-06 Score=91.66 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhc
Q 009257 355 LIPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 355 l~PDLIIYLdaspE~~leRIkkRG 378 (539)
..||++|+|+++++++++|+.+|.
T Consensus 99 ~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 99 IRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred CCCCEEEEEeCCHHHHHHHHhccc
Confidence 379999999999999999998875
No 56
>PRK13946 shikimate kinase; Provisional
Probab=98.40 E-value=1.8e-05 Score=75.31 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
..+.|++.|.+||||||+++.|++. ++..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~-Lg~~ 37 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATM-LGLP 37 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 3458999999999999999999996 6654
No 57
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.37 E-value=2.4e-05 Score=70.66 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=35.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHhc-cccccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 009257 357 PDGFIYLRASPDTCHKRMMLRK-RAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSK 416 (539)
Q Consensus 357 PDLIIYLdaspE~~leRIkkRG-Rd~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~ 416 (539)
...+|||++|++++.+|+..|+ |+.-.....+.+..+...+..++... -..+|+++.
T Consensus 92 ~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~~---ad~~i~~~~ 149 (154)
T cd00464 92 NGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYREV---ADLTIDTDE 149 (154)
T ss_pred CCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHh---CcEEEECCC
Confidence 4689999999999999999885 44433333344444444444444332 235566554
No 58
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.35 E-value=7.4e-07 Score=77.27 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
|.|.|+.||||||+++.|+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999997
No 59
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.34 E-value=9.1e-06 Score=75.51 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.|.|.|.+||||||+++.|++. ++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~-lg~~ 29 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA-LGYR 29 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 45788899999999999999986 6654
No 60
>PRK04182 cytidylate kinase; Provisional
Probab=98.34 E-value=1.8e-05 Score=73.10 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|+|+|.|..||||||+++.|++. ++..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~-lg~~ 27 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEK-LGLK 27 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-cCCc
Confidence 68999999999999999999986 6643
No 61
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.34 E-value=1.7e-05 Score=74.37 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKR 379 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGR 379 (539)
.|+++|+|++|++++++|+.+|+.
T Consensus 104 ~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 104 KPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred CCCEEEEEECCHHHHHHHHHcCCc
Confidence 689999999999999999999874
No 62
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.34 E-value=1.9e-05 Score=72.55 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|+|+|.|..||||||+++.|++. ++..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~-lg~~ 27 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEK-LSLK 27 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-cCCc
Confidence 68999999999999999999986 5644
No 63
>PTZ00301 uridine kinase; Provisional
Probab=98.33 E-value=4.2e-06 Score=82.45 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHh-----ccccccCCcHHHHHHHHHHHHHhhccCC
Q 009257 356 IPDGFIYLRASPDTCHKRMMLR-----KRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkR-----GRd~E~~i~leYLe~L~e~YEewl~~~~ 405 (539)
..|+.||++++.++++.|..+| |++.|. +-..|...+...|.+++.+.+
T Consensus 126 l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~-v~~~~~~~v~~~~~~~I~p~k 179 (210)
T PTZ00301 126 EMDCLIFVDTPLDICLIRRAKRDMRERGRTFES-VIEQYEATVRPMYYAYVEPSK 179 (210)
T ss_pred hCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHH-HHHHHHHhhcccHHHHcCccc
Confidence 3589999999999999886544 444442 334466667778888877654
No 64
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.27 E-value=1.4e-05 Score=77.85 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRA 380 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd 380 (539)
.+|.+|++.+|++++.+|+.+|++.
T Consensus 133 ~~d~ii~V~a~~e~~~~Rl~~R~~~ 157 (208)
T PRK14731 133 GLDFIVVVAADTELRLERAVQRGMG 157 (208)
T ss_pred cCCeEEEEECCHHHHHHHHHHcCCC
Confidence 4699999999999999999999864
No 65
>PRK00625 shikimate kinase; Provisional
Probab=98.26 E-value=8.6e-06 Score=77.87 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|++.|..||||||+++.|+++ ++..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~-l~~~ 27 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKF-LSLP 27 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 56999999999999999999996 6654
No 66
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.24 E-value=2.9e-05 Score=85.47 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=94.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCce-EEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~-EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~k 297 (539)
..+.+|+|||.+||||+++++.|.+. ++..++- ..+..|... + ....| .-|+-
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~-ldprg~~v~~~~~P~~e------------E------~~~~f-------lwRfw 91 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEW-MDPRGIETHAFGRPSDE------------E------RERPP-------MWRFW 91 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHH-hCcCccEEEeCCCCCHH------------H------hcCcH-------HHHHH
Confidence 56889999999999999999999985 7766532 122333110 0 01121 23442
Q ss_pred HHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHH-HHhhHHHHHhcCC--CCCCcEEEEEeCCHHHHHHHH
Q 009257 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISI-YDSWFDPVVSVLP--GLIPDGFIYLRASPDTCHKRM 374 (539)
Q Consensus 298 q~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~i-Y~~l~~~l~~~Lp--~l~PDLIIYLdaspE~~leRI 374 (539)
..+|..+.+.|+|||.|.+. ...- -.|.+++.+|.. |.++.++ ...|- | .-=+-+||++|.++..+|+
T Consensus 92 ---~~lP~~G~I~IFdRSWY~~v--lver--v~g~~~~~~~~~~~~~I~~F-E~~L~~~G-~~IlKffLhIsk~EQ~kRl 162 (493)
T TIGR03708 92 ---RRLPPKGKIGIFFGSWYTRP--LIER--LEGRIDEAKLDSHIEDINRF-ERMLADDG-ALILKFWLHLSKKQQKERL 162 (493)
T ss_pred ---HhCCCCCeEEEEcCcccchh--hHHH--hcCCCCHHHHHHHHHHHHHH-HHHHHHCC-CEEEEEEEECCHHHHHHHH
Confidence 23456678999999999995 2222 247777777753 4444432 11121 1 1226789999999999999
Q ss_pred HHhcccccc--C------CcHHHHHHHHHHHHHhhcc
Q 009257 375 MLRKRAEEG--G------VSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 375 kkRGRd~E~--~------i~leYLe~L~e~YEewl~~ 403 (539)
.+|-.+-.+ . ...+++....+.|++.+..
T Consensus 163 ~~r~~~P~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~ 199 (493)
T TIGR03708 163 KKLEKDPETRWRVTPEDWKQLKVYDRYRKLAERMLRY 199 (493)
T ss_pred HHHhcCCccccCCCHHHHHHHHhHHHHHHHHHHHHHh
Confidence 988754433 1 1345566667777776654
No 67
>PRK13947 shikimate kinase; Provisional
Probab=98.21 E-value=3.5e-05 Score=71.37 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
-|+|.|.+||||||+++.|++. ++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~-lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT-LSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH-hCCC
Confidence 4899999999999999999996 6754
No 68
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.20 E-value=6.1e-05 Score=70.50 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+|+|.|+.||||||+++.|+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999985
No 69
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.18 E-value=1.7e-05 Score=77.06 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak 243 (539)
++|+|.|.+||||||+++.|++
T Consensus 2 ~~igitG~igsGKst~~~~l~~ 23 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS 23 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 70
>PRK14529 adenylate kinase; Provisional
Probab=98.18 E-value=1.6e-05 Score=79.20 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRD 250 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~ 250 (539)
|.|+|.|++||||||+++.|+++ +++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~-~~~~~ 28 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKK-YDLAH 28 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HCCCC
Confidence 46899999999999999999996 67653
No 71
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.18 E-value=1.3e-05 Score=77.45 Aligned_cols=28 Identities=32% Similarity=0.435 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.++.+|+|.|+.|||||||++.|... +.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~-l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ-LG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH-hc
Confidence 46789999999999999999999985 44
No 72
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.18 E-value=3.6e-05 Score=73.19 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+|+|-|+.||||||+++.|+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999874
No 73
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.16 E-value=9.1e-05 Score=68.30 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 224 FCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
|+|-|+.||||||+++.|++. ++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~-l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR-LG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh-cC
Confidence 578899999999999999986 55
No 74
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.16 E-value=8.6e-05 Score=71.91 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRG 378 (539)
.||.+|+|++|.+++++|+..|.
T Consensus 103 ~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 103 KIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred CCCEEEEEECCHHHHHHHHHCCC
Confidence 48999999999999999999885
No 75
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.16 E-value=8.3e-05 Score=69.94 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+|.+.|..||||||+++.|++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999986
No 76
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.15 E-value=4.7e-05 Score=76.41 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=103.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceE-EeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVE-IVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~E-vV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~k 297 (539)
..+.+|+|||.+||||...++.|.+. ++-.++.. .+..|... + .+..| +-|+-
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~-lDPRg~~v~~~~~pt~e------------E------~~~p~-------lwRfw 82 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEH-LNPRGARVVALPKPSDR------------E------RTQWY-------FQRYV 82 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHh-cCCCeeEEEeCCCCCHH------------H------HcChH-------HHHHH
Confidence 35889999999999999999999985 77665321 12222100 0 11122 23442
Q ss_pred HHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHH-HHhhHHHHHhcCC-CCCCcEEEEEeCCHHHHHHHHH
Q 009257 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISI-YDSWFDPVVSVLP-GLIPDGFIYLRASPDTCHKRMM 375 (539)
Q Consensus 298 q~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~i-Y~~l~~~l~~~Lp-~l~PDLIIYLdaspE~~leRIk 375 (539)
..+|..+.+.|++||.|++. ...- -.|.+++.+|.. |.++.++ ...|- +-..=+-+||++|.++..+|++
T Consensus 83 ---~~lP~~G~i~IF~rSwY~~~--lv~r--v~~~~~~~~~~~~~~~I~~F-Er~L~~~G~~IlKfflhIsk~eQ~kRl~ 154 (230)
T TIGR03707 83 ---QHLPAAGEIVLFDRSWYNRA--GVER--VMGFCTDEEYEEFLRQVPEF-ERMLVRDGIHLFKYWLSVSREEQLRRFK 154 (230)
T ss_pred ---HhCCCCCeEEEEeCchhhhH--HHHH--hcCCCCHHHHHHHHHHHHHH-HHHHHHCCCEEEEEEEECCHHHHHHHHH
Confidence 23466678999999999995 3322 247777777754 4444432 22221 0022367999999999999999
Q ss_pred Hhcccccc--C------CcHHHHHHHHHHHHHhhccCC--CCCeEEEecCC
Q 009257 376 LRKRAEEG--G------VSLDYLRSLHEKHENWLFPFE--SGNHGVLAVSK 416 (539)
Q Consensus 376 kRGRd~E~--~------i~leYLe~L~e~YEewl~~~~--~~~~~VIdad~ 416 (539)
+|-.+... . ...+.+....+.|++.+..-. .-+..||+++.
T Consensus 155 ~r~~~p~k~Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d 205 (230)
T TIGR03707 155 ARIDDPLKQWKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDD 205 (230)
T ss_pred HHhcCCcccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 88654332 1 134456777788888776533 23678888776
No 77
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.14 E-value=2.5e-05 Score=74.94 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|.|++||||||+++.|+++ +++.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~-~gl~ 27 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEH-LGLK 27 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHH-hCCc
Confidence 78999999999999999999997 7865
No 78
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.12 E-value=3e-05 Score=75.15 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++|+|.|.+||||||+++.|++. +++.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~-~g~~ 28 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ-KGIP 28 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh-hCCe
Confidence 47999999999999999999985 4543
No 79
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.10 E-value=0.00015 Score=73.23 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=36.6
Q ss_pred EEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhcc-------CC-CCCeEEEecCCCC
Q 009257 360 FIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP-------FE-SGNHGVLAVSKLP 418 (539)
Q Consensus 360 IIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~-------~~-~~~~~VIdad~~~ 418 (539)
+|||++|.+++.+|+.+|++. .++.+=+++..+.++.+... +. .....++|+|..-
T Consensus 106 ~v~l~~~~e~~~~R~~~R~~~---~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl 169 (300)
T PHA02530 106 EKVFDVPVEELVKRNRKRGER---AVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTL 169 (300)
T ss_pred EEEeCCCHHHHHHHHHccCcC---CCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcC
Confidence 699999999999999999643 24555555555666655332 11 1356677777644
No 80
>PRK07667 uridine kinase; Provisional
Probab=98.10 E-value=9.1e-05 Score=71.25 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
..|.+||+++|++++++|+.+|.-.. ..+|..+....++.|+...
T Consensus 138 ~~d~~v~V~~~~~~~~~R~~~r~~~~----~~~~~~r~~~a~~~y~~~~ 182 (193)
T PRK07667 138 FFHYMVYLDCPRETRFLRESEETQKN----LSKFKNRYWKAEDYYLETE 182 (193)
T ss_pred hceEEEEEECCHHHHHHHHhcccHhH----HHHHHHHhHHHHHHHHhhc
Confidence 36999999999999999998865322 2456666667777776553
No 81
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.09 E-value=3.2e-05 Score=78.05 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++|+|+|.|||||||+++.|++. +++.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~-~G~~ 28 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREE-HHIE 28 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-cCCe
Confidence 58999999999999999999974 3543
No 82
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.09 E-value=7.7e-07 Score=85.11 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=33.1
Q ss_pred CCcEEEEEeCCHHHHHHHHH-----HhccccccCCcHHHHHHHHHHHHHhhccCC
Q 009257 356 IPDGFIYLRASPDTCHKRMM-----LRKRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIk-----kRGRd~E~~i~leYLe~L~e~YEewl~~~~ 405 (539)
..|+.|||+++.++++.|.. .||++.|+ +-..|. .+...|+.|+.+.+
T Consensus 126 l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~-~~~~~~-~~~~~~~~~I~p~~ 178 (194)
T PF00485_consen 126 LFDLKIFLDADEDLRLERRIQRDVAERGRSPEE-VIAQYE-RVRPGYERYIEPQK 178 (194)
T ss_dssp G-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH-HHHHHH-THHHHHHHCTGGGG
T ss_pred cceeEEEecccHHHHHHHHhhhhccccCCccee-EEEEee-cCChhhhhheeccc
Confidence 46999999999999888743 45666554 334444 89999999998764
No 83
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.09 E-value=0.00024 Score=67.36 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.+.|+|-|+.||||||+++.|++. ++..
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~-l~~~ 31 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQ-LNME 31 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHH-cCCc
Confidence 3457999999999999999999986 5644
No 84
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.08 E-value=3.4e-05 Score=74.32 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++|+|.|.+||||||+++.|++ +++.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~--~g~~ 28 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE--LGAP 28 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--cCCE
Confidence 5899999999999999999997 4543
No 85
>PRK06547 hypothetical protein; Provisional
Probab=98.06 E-value=9.9e-05 Score=70.49 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=31.8
Q ss_pred EEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 359 GFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 359 LIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
++|||++|++++++|+.+|.-. ...|+.+....-+.++...
T Consensus 120 ~~I~ld~~~~vr~~R~~~Rd~~-----~~~~~~~w~~~e~~~~~~~ 160 (172)
T PRK06547 120 LTVWLDGPEALRKERALARDPD-----YAPHWEMWAAQEERHFARY 160 (172)
T ss_pred EEEEEECCHHHHHHHHHhcCch-----hhHHHHHHHHHHHHHHhcC
Confidence 8999999999999999988532 4557777776666666554
No 86
>PRK01184 hypothetical protein; Provisional
Probab=98.04 E-value=0.00017 Score=67.99 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHhccc
Q 009257 357 PDGFIYLRASPDTCHKRMMLRKRA 380 (539)
Q Consensus 357 PDLIIYLdaspE~~leRIkkRGRd 380 (539)
+..+||+++|++++++|+..|++.
T Consensus 104 ~~~~i~v~~~~~~~~~Rl~~R~~~ 127 (184)
T PRK01184 104 DFILIAIHAPPEVRFERLKKRGRS 127 (184)
T ss_pred ccEEEEEECCHHHHHHHHHHcCCC
Confidence 568999999999999999999874
No 87
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.04 E-value=0.00017 Score=65.47 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
+|.|.|+.||||||+++.|++. ++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~-~~~ 25 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER-LGA 25 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh-cCC
Confidence 4789999999999999999986 453
No 88
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.03 E-value=3.8e-05 Score=74.70 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRG 378 (539)
..|.+||+++|++++++|+.+|+
T Consensus 121 ~~D~vi~V~a~~e~r~~RL~~R~ 143 (196)
T PRK14732 121 LCDATVTVDSDPEESILRTISRD 143 (196)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC
Confidence 46999999999999999999985
No 89
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.02 E-value=6e-05 Score=71.72 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHhcccccc---CCcHHHHHHHHHHHHH
Q 009257 352 LPGLIPDGFIYLRASPDTCHKRMMLRKRAEEG---GVSLDYLRSLHEKHEN 399 (539)
Q Consensus 352 Lp~l~PDLIIYLdaspE~~leRIkkRGRd~E~---~i~leYLe~L~e~YEe 399 (539)
+|..+.|++|.|+++-+++++|++.||....+ ++.-+-+..+.+.-.+
T Consensus 88 FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~e 138 (176)
T KOG3347|consen 88 FPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARE 138 (176)
T ss_pred cchhheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHH
Confidence 45557899999999999999999999976433 4555555555444443
No 90
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.02 E-value=0.0001 Score=75.43 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=100.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCce-EEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~-EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq 298 (539)
.+.+|+|||.+||||...++.|.+. ++-.++. ..+..|.+. + .+..| .-|+
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~-lDPRg~~V~s~~~Pt~e------------E------~~~p~-------lWRf-- 106 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSG-VNPQGCQVTSFKAPSAE------------E------LDHDF-------LWRI-- 106 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHh-cCCCeeEEEeCCCCCHH------------H------HcCch-------HHHH--
Confidence 4789999999999999999999985 7766532 122222100 0 11122 1233
Q ss_pred HHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHH-HHhhHHHHHhcCC--CCCCcEEEEEeCCHHHHHHHHH
Q 009257 299 ERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISI-YDSWFDPVVSVLP--GLIPDGFIYLRASPDTCHKRMM 375 (539)
Q Consensus 299 ~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~i-Y~~l~~~l~~~Lp--~l~PDLIIYLdaspE~~leRIk 375 (539)
...++..+.+.|+|||.|++. ...- -.|.+++.+|.. |.++.++ ...|- | ..=+-+||++|.++..+|++
T Consensus 107 -w~~lP~~G~i~IF~RSWY~~v--l~~r--v~g~~~~~~~~~~~~~I~~F-Er~L~~~G-~~IiKffLhIsk~eQ~kRl~ 179 (264)
T TIGR03709 107 -HKALPERGEIGIFNRSHYEDV--LVVR--VHGLIPKAIWERRYEDINDF-ERYLTENG-TTILKFFLHISKEEQKKRFL 179 (264)
T ss_pred -HHhCCCCCeEEEEcCccccch--hhhh--hcCCCCHHHHHHHHHHHHHH-HHHHHHCC-cEEEEEEEeCCHHHHHHHHH
Confidence 233466678999999999995 3322 247777777753 4444332 11121 1 12267899999999999999
Q ss_pred HhccccccC--C------cHHHHHHHHHHHHHhhccCC--CCCeEEEecCC
Q 009257 376 LRKRAEEGG--V------SLDYLRSLHEKHENWLFPFE--SGNHGVLAVSK 416 (539)
Q Consensus 376 kRGRd~E~~--i------~leYLe~L~e~YEewl~~~~--~~~~~VIdad~ 416 (539)
+|-.+-... + ..+.+....+.|++.+..-. .-...||+++.
T Consensus 180 ~r~~~p~k~Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d 230 (264)
T TIGR03709 180 ARLDDPTKNWKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADD 230 (264)
T ss_pred HHhcCCcccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 886443221 1 24446677788888776532 23677777665
No 91
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.99 E-value=8.4e-05 Score=66.29 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+|+|.|..||||||+++.|++. ++..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~-~~~~ 26 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK-LGLP 26 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 5899999999999999999986 5644
No 92
>PRK13948 shikimate kinase; Provisional
Probab=97.98 E-value=0.00045 Score=66.79 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+..|++-|..||||||+.+.|++. ++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~-lg~~ 37 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA-LMLH 37 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 4568999999999999999999986 6654
No 93
>PLN02674 adenylate kinase
Probab=97.98 E-value=0.00021 Score=72.35 Aligned_cols=28 Identities=25% Similarity=0.145 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+.|+|-|++||||||+++.|+++ +++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~-~~~~ 58 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDE-YCLC 58 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-cCCc
Confidence 467899999999999999999996 5643
No 94
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.98 E-value=2.2e-05 Score=83.98 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.|+|.|.|||||||+++.|++ +++.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~--~G~~ 27 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE--LGAV 27 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--CCCe
Confidence 4799999999999999999997 4653
No 95
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.97 E-value=8.6e-05 Score=73.02 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.++|+|+|.|||||||+++.+++ +++.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~--~G~~ 28 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE--LGFP 28 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH--cCCe
Confidence 47999999999999999999998 3554
No 96
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.96 E-value=0.00026 Score=73.29 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+++.|+|.|.+||||||+.+.|++. ++..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~-Lg~~ 160 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAAR-LGVP 160 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 46779999999999999999999986 6654
No 97
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.96 E-value=1.4e-05 Score=77.04 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|+|+|+|.+||||||+++.|++ +++.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~--~G~~ 26 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE--LGFP 26 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--TT-E
T ss_pred CEEEEECCCcCCHHHHHHHHHH--CCCC
Confidence 7899999999999999999998 4654
No 98
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00021 Score=68.98 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+-|++-|..||||||+-+.|++. |+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~-L~~~ 29 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKA-LNLP 29 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHH-cCCC
Confidence 356899999999999999999996 7765
No 99
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.95 E-value=1.7e-05 Score=75.72 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=34.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHh-----ccccccCCcHHHHHHHHHHHHHhhccCC
Q 009257 356 IPDGFIYLRASPDTCHKRMMLR-----KRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkR-----GRd~E~~i~leYLe~L~e~YEewl~~~~ 405 (539)
..|++|||+++++++++|...| ++..|. ....|...+...|..++..+.
T Consensus 118 ~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~-~~~~~~~~~~~~~~~~i~~~~ 171 (198)
T cd02023 118 LMDLKIFVDTDADVRLIRRIERDIVERGRDLES-VINQYLKFVKPMHEQFIEPTK 171 (198)
T ss_pred hcCeEEEEECChhHHHHHHHHHHhhhcCCCHHH-HHHHHHHhhhhhHHHhCccch
Confidence 4699999999999988876554 333332 224466777788888876654
No 100
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.93 E-value=4.4e-05 Score=72.47 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
++.+|-|.|..||||||+++.|.+++
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999974
No 101
>PRK06761 hypothetical protein; Provisional
Probab=97.93 E-value=0.00041 Score=71.62 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|++++|+|+|++||||||+++.|+++ +...
T Consensus 1 mm~~lIvI~G~~GsGKTTla~~L~~~-L~~~ 30 (282)
T PRK06761 1 MMTKLIIIEGLPGFGKSTTAKMLNDI-LSQN 30 (282)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh-cCcC
Confidence 45679999999999999999999996 5543
No 102
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.92 E-value=0.00025 Score=72.54 Aligned_cols=137 Identities=14% Similarity=0.141 Sum_probs=63.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCC-ceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELRD-LVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQERE 301 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~~-~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq~~e 301 (539)
+|+|.|.+||||||+++.|++. +.... -+.++.+.. -.+-..-|.|+..+...-.. +.+- ...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~-~~~~~~~v~~i~~~~----------~~~~~~~y~~~~~Ek~~R~~--l~s~---v~r 66 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKY-LEEKGKEVVIISDDS----------LGIDRNDYADSKKEKEARGS--LKSA---VER 66 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-HHHTT--EEEE-THH----------HH-TTSSS--GGGHHHHHHH--HHHH---HHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH-HHhcCCEEEEEcccc----------cccchhhhhchhhhHHHHHH--HHHH---HHH
Confidence 8999999999999999999996 34332 123343210 00111114343322211110 1111 111
Q ss_pred hcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhcccc
Q 009257 302 SSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRAE 381 (539)
Q Consensus 302 ~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRGRd~ 381 (539)
.+ ..+.+||+|-.-| +..+- ++ +|....+ .. .+-.+||++++.++|++|-.+|+.+.
T Consensus 67 ~l-s~~~iVI~Dd~nY-----iKg~R----------Ye----lyclAr~-~~--~~~c~i~~~~~~e~~~~~N~~R~~~~ 123 (270)
T PF08433_consen 67 AL-SKDTIVILDDNNY-----IKGMR----------YE----LYCLARA-YG--TTFCVIYCDCPLETCLQRNSKRPEPE 123 (270)
T ss_dssp HH-TT-SEEEE-S--------SHHHH----------HH----HHHHHHH-TT---EEEEEEEE--HHHHHHHHHHTT-S-
T ss_pred hh-ccCeEEEEeCCch-----HHHHH----------HH----HHHHHHH-cC--CCEEEEEECCCHHHHHHhhhccCCCC
Confidence 12 1235665543222 22222 22 3323222 22 57799999999999999998887532
Q ss_pred ccCCcHHHHHHHHHHHHHh
Q 009257 382 EGGVSLDYLRSLHEKHENW 400 (539)
Q Consensus 382 E~~i~leYLe~L~e~YEew 400 (539)
..+.+-+..+...||.=
T Consensus 124 --~~~~e~i~~m~~RfE~P 140 (270)
T PF08433_consen 124 --RYPEETIDDMIQRFEEP 140 (270)
T ss_dssp ---S-HHHHHHHHHH---T
T ss_pred --CCCHHHHHHHHHHhcCC
Confidence 25677788888888863
No 103
>PRK06696 uridine kinase; Validated
Probab=97.92 E-value=4.8e-05 Score=74.57 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccc---ccCCcHHHHHHHHHHHHHhhcc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAE---EGGVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~---E~~i~leYLe~L~e~YEewl~~ 403 (539)
..|++||++++.+++++|+..|.+.. .......|+.++...++.++..
T Consensus 146 ~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~~~~~~~~r~~~~~~~y~~~ 196 (223)
T PRK06696 146 LWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEEAEKMYLARYHPAQKLYIAE 196 (223)
T ss_pred hCCEEEEEECCHHHHHHHHHHhhhhhhCCchHHHHHHHHHHhHHHHHHHhh
Confidence 45899999999999999998885321 1124566777777777766643
No 104
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.91 E-value=0.00012 Score=81.23 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++++|+|.|+.||||||+++.|+++ ++.
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~-l~~ 310 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKK-LGL 310 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 37799999999999999999999996 553
No 105
>PRK15453 phosphoribulokinase; Provisional
Probab=97.89 E-value=3.2e-05 Score=79.90 Aligned_cols=48 Identities=19% Similarity=0.074 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCHHHHHHH-H----HHhccccccCCcHHHHHHHHHHHHHhhccCC
Q 009257 356 IPDGFIYLRASPDTCHKR-M----MLRKRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leR-I----kkRGRd~E~~i~leYLe~L~e~YEewl~~~~ 405 (539)
..|+.||++.+.++++.| | .+|||+.|. +-..|+.+. ..|..++.+..
T Consensus 146 ~~DlkIfVdp~~dlr~irRI~RD~~ERGrs~Es-Vi~qilrrm-Pdy~~yI~PQ~ 198 (290)
T PRK15453 146 HVDLLIGVVPIVNLEWIQKIHRDTSERGYSREA-VMDTILRRM-PDYINYITPQF 198 (290)
T ss_pred hCCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHH-HHHHHHHhC-ChHhhhCCCCc
Confidence 579999999999999754 3 568888884 677888886 99999987754
No 106
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.89 E-value=0.0002 Score=78.93 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|.|.+||||||+++.|++. ++..
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~-lg~~ 27 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEV-LDLQ 27 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-cCCe
Confidence 57999999999999999999986 6654
No 107
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.88 E-value=4.7e-05 Score=72.41 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRG 378 (539)
..|.+||++++++++++|+.+|+
T Consensus 123 ~~D~vv~V~~~~~~~~~Rl~~R~ 145 (188)
T TIGR00152 123 LCDRVIVVDVSPQLQLERLMQRD 145 (188)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC
Confidence 46899999999999999999986
No 108
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.87 E-value=7.6e-05 Score=74.53 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.+|.|+|-|++||||||+++.|++. +++.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~-~g~~ 33 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKK-ENLK 33 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 34577999999999999999999996 5654
No 109
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.87 E-value=0.00022 Score=71.51 Aligned_cols=149 Identities=18% Similarity=0.175 Sum_probs=81.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceE-EeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVE-IVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~E-vV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq 298 (539)
.+.+|+|||.+||||+.+++.|-+. ++-.++-. .+..|.+ +. .+..| + -|+
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~-lDPR~~~v~~~~~pt~-------------eE-----~~~p~------l-wRf-- 81 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEW-LDPRGFRVHAFGKPTD-------------EE-----LRRPF------L-WRF-- 81 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCC-S-GGGEEEEE-SS--H-------------HH-----HTS-T------T-HHH--
T ss_pred CcEEEEEeccccCCchHHHHHHHHh-CCCCeeEEEeCCCCCh-------------hH-----cCCCc------H-HHH--
Confidence 4589999999999999999999874 66654321 2222211 10 01111 1 233
Q ss_pred HHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCC--CCCCcEEEEEeCCHHHHHHHHHH
Q 009257 299 ERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP--GLIPDGFIYLRASPDTCHKRMML 376 (539)
Q Consensus 299 ~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp--~l~PDLIIYLdaspE~~leRIkk 376 (539)
-..+|..+.+.|+|||.|++. +.. ...|.+++.++....+-...+...|. | ..=+-|||++|.++..+|+++
T Consensus 82 -w~~lP~~G~I~if~rSWY~~~--l~~--rv~~~~~~~~~~~~~~~I~~FEr~L~~~G-~~IiKfflhIsk~eQ~kRl~~ 155 (228)
T PF03976_consen 82 -WRALPARGQIGIFDRSWYEDV--LVE--RVEGFIDEAEWERRLEEINRFERMLADDG-TLIIKFFLHISKKEQKKRLKE 155 (228)
T ss_dssp -HTTS--TT-EEEEES-GGGGG--THH--HHTTSSTHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE--HHHHHHHHHH
T ss_pred -HHhCCCCCEEEEEecchhhHH--HHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHCC-CeEEEEEEEeCHHHHHHHHHH
Confidence 233466678999999999995 332 23567777777543322222222221 1 122678999999999999998
Q ss_pred hcccccc--CC------cHHHHHHHHHHHHHhhc
Q 009257 377 RKRAEEG--GV------SLDYLRSLHEKHENWLF 402 (539)
Q Consensus 377 RGRd~E~--~i------~leYLe~L~e~YEewl~ 402 (539)
|..+-.. .+ ..+.+......|++.+.
T Consensus 156 ~~~~p~~~wkv~~~D~~~~~~yd~y~~a~~~~l~ 189 (228)
T PF03976_consen 156 REEDPLKRWKVSPEDWEQRKHYDRYQKAYEEMLE 189 (228)
T ss_dssp HHHSCCCGGG--HHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhcCccccccCCHHHHHHHhhHHHHHHHHHHHHh
Confidence 8654332 11 12234455566666654
No 110
>PLN02422 dephospho-CoA kinase
Probab=97.85 E-value=0.00017 Score=72.44 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRG 378 (539)
..|.+|++++|+++.++|+.+|+
T Consensus 125 ~~D~vI~V~a~~e~ri~RL~~R~ 147 (232)
T PLN02422 125 WTKPVVVVWVDPETQLERLMARD 147 (232)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC
Confidence 46999999999999999999986
No 111
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.81 E-value=0.00082 Score=64.19 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
|.+.+|+|-|..||||||+++.|+..
T Consensus 1 ~~ge~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999985
No 112
>PRK07261 topology modulation protein; Provisional
Probab=97.79 E-value=8.6e-05 Score=70.30 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
|.|+|-|+.||||||+++.|++. ++.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~-~~~ 26 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH-YNC 26 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH-hCC
Confidence 56999999999999999999985 454
No 113
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.77 E-value=3.2e-05 Score=79.43 Aligned_cols=48 Identities=17% Similarity=0.067 Sum_probs=39.8
Q ss_pred CCcEEEEEeCCHHHHHHH-----HHHhccccccCCcHHHHHHHHHHHHHhhccCC
Q 009257 356 IPDGFIYLRASPDTCHKR-----MMLRKRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leR-----IkkRGRd~E~~i~leYLe~L~e~YEewl~~~~ 405 (539)
..|+.||++.+.++++-| +.+|||+.|. +-..|+.++ ..|..++.+..
T Consensus 140 ~~DlkIfVd~~~dlr~irRI~RD~~ERGrs~Es-Vi~qilrrm-pdy~~yI~PQ~ 192 (277)
T cd02029 140 HADLLVGVVPIINLEWIQKIHRDTAERGYSAEA-VMDTILRRM-PDYINYICPQF 192 (277)
T ss_pred hCCeEEEecCcHHHHHHHHHHhhhHhhCCCHHH-HHHHHHHhC-chHHhhCCccc
Confidence 579999999999999755 3568998884 778899999 99999987764
No 114
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.74 E-value=3.7e-05 Score=72.94 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRG 378 (539)
..|.+||+++|+++.++|+.+|.
T Consensus 121 ~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 121 LVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred hCCeEEEEECCHHHHHHHHHHcC
Confidence 46999999999999999999885
No 115
>PLN02348 phosphoribulokinase
Probab=97.71 E-value=0.00034 Score=75.21 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.++.+|+|.|..||||||+++.|++. ++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~-Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV-FG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-Hh
Confidence 46789999999999999999999996 55
No 116
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00023 Score=69.35 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD 250 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~ 250 (539)
.++.+|=++|..||||||++..|.+. |-..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~-L~~~G 51 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK-LFAKG 51 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH-HHHcC
Confidence 46789999999999999999999997 44444
No 117
>PRK14526 adenylate kinase; Provisional
Probab=97.71 E-value=0.0015 Score=64.49 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|.|++||||||+++.|++. ++..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~-~~~~ 27 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNE-LNYY 27 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 45889999999999999999985 4543
No 118
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.71 E-value=6.6e-05 Score=74.14 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+|+|.|+.||||||+++.|+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 119
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.70 E-value=0.0013 Score=65.32 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|+.++|+|.|..||||||++++|+++ +++.
T Consensus 2 ~~~~~i~i~g~~gsGksti~~~la~~-~~~~ 31 (225)
T PRK00023 2 MKAIVIAIDGPAGSGKGTVAKILAKK-LGFH 31 (225)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 56789999999999999999999986 6654
No 120
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.70 E-value=0.00072 Score=66.08 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
|++++|.|.|.+||||||+++.|++. ++.
T Consensus 1 ~~~~~i~i~G~~G~GKst~a~~l~~~-~~~ 29 (197)
T PRK12339 1 MESTIHFIGGIPGVGKTSISGYIARH-RAI 29 (197)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 57889999999999999999999986 554
No 121
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.0015 Score=62.89 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|.|-|++|||||||++.|++. ++..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~-~~i~ 27 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK-LGLP 27 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 57899999999999999999997 5543
No 122
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.60 E-value=0.00027 Score=64.77 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHH
Q 009257 355 LIPDGFIYLRASPDTCHKRMML 376 (539)
Q Consensus 355 l~PDLIIYLdaspE~~leRIkk 376 (539)
..||.+|+|+++.+++.+|+..
T Consensus 101 ~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 101 IPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp SEESEEEEEE--HHHHHHHHHT
T ss_pred cchheeeccccchhhhhhhccc
Confidence 4799999999999999999987
No 123
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.00053 Score=65.16 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=32.8
Q ss_pred EEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 009257 359 GFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSK 416 (539)
Q Consensus 359 LIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~ 416 (539)
.+|||+.+++++++|++.|...+= ..+ .|...++..=.+-..+.+.+||+++
T Consensus 93 ~Fv~L~g~~~~i~~Rm~~R~gHFM---~~~---ll~SQfa~LE~P~~de~vi~idi~~ 144 (161)
T COG3265 93 RFVYLDGDFDLILERMKARKGHFM---PAS---LLDSQFATLEEPGADEDVLTIDIDQ 144 (161)
T ss_pred EEEEecCCHHHHHHHHHhcccCCC---CHH---HHHHHHHHhcCCCCCCCEEEeeCCC
Confidence 589999999999999999987653 222 3444444432222333455555544
No 124
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.0018 Score=62.82 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=23.1
Q ss_pred CCC-eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKR-ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~-m~IaIEG~IGSGKSTLaklLak~ 244 (539)
|++ |+++|.|.+|+||||+++.+.+.
T Consensus 1 mk~~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 1 MKGRKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred CCCceEEEEEcCCCCChHHHHHHHHHH
Confidence 344 89999999999999999999886
No 125
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.57 E-value=0.00046 Score=68.02 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.++.|+|.|.+||||||+++.|++. +++.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~-lg~~ 33 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEK-LNLN 33 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHH-cCCe
Confidence 4578999999999999999999974 5654
No 126
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.55 E-value=0.00097 Score=73.71 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=93.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCce-EEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRV 296 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~-EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~ 296 (539)
...+.+|++||.++|||-..++.|.+. ++-.++. ..+..|.+. + .... | .-|+
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~-ldPrg~~v~~~~~Pt~~------------E------~~~~------~-lwRf 349 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEA-LDARQYRVVPIAAPTDE------------E------KAQH------Y-LWRF 349 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhh-cCCCeeEEEeCCCcCHH------------H------HcCc------H-HHHH
Confidence 456899999999999999999999985 7766532 122222110 0 0111 2 2344
Q ss_pred HHHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHH-HHHhhHHHHHhcCC--CCCCcEEEEEeCCHHHHHHH
Q 009257 297 MQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEIS-IYDSWFDPVVSVLP--GLIPDGFIYLRASPDTCHKR 373 (539)
Q Consensus 297 kq~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~-iY~~l~~~l~~~Lp--~l~PDLIIYLdaspE~~leR 373 (539)
. ..+|..+.+.|+|||.|.+. ... .-.|.+++.+|. .|.++.++ ...|- | ..=+-+||++|.++..+|
T Consensus 350 ~---~~lP~~G~i~iFdRSwY~~v--lve--rv~g~~~~~~~~~~~~~I~~F-E~~L~~~G-~~ivKf~LhIsk~EQ~~R 420 (493)
T TIGR03708 350 W---RHIPRRGRITIFDRSWYGRV--LVE--RVEGFCSEAEWLRAYGEINDF-EEQLTEHG-AIVVKFWLHIDKEEQLRR 420 (493)
T ss_pred H---HhCCCCCeEEEEcCCccCCc--cee--eecCCCCHHHHHHHHHHHHHH-HHHHHHCC-CEEEEEEEEcCHHHHHHH
Confidence 2 23466678999999999885 222 224777777775 35555543 11221 1 223678999999999999
Q ss_pred HHHhcccccc--CC------cHHHHHHHHHHHHHhhc
Q 009257 374 MMLRKRAEEG--GV------SLDYLRSLHEKHENWLF 402 (539)
Q Consensus 374 IkkRGRd~E~--~i------~leYLe~L~e~YEewl~ 402 (539)
+..|-.+..+ .+ ..+.+..-...|++.+.
T Consensus 421 ~~~r~~~p~k~WK~t~~D~~~r~~w~~Y~~a~~~ml~ 457 (493)
T TIGR03708 421 FEERENTPFKRYKITDEDWRNREKWDAYEDAVNDMID 457 (493)
T ss_pred HHHHhcCCccCCcCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 9998765443 12 23445555555665554
No 127
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.55 E-value=0.0037 Score=61.54 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|+.|||||||++.|+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999985
No 128
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.55 E-value=5.2e-05 Score=73.65 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+|+|.|..||||||+++.|++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 129
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.55 E-value=0.0032 Score=65.15 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
..+|+|.|++||||||+++.|+.
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999999975
No 130
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.51 E-value=0.00066 Score=73.10 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.-...|+|.|..|||||||++.|+++ ++..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~-~g~~ 246 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI-FNTT 246 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH-hCCC
Confidence 34568999999999999999999986 5655
No 131
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.50 E-value=0.0025 Score=60.25 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++++|+|.|.+|+||||+++.|...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999986
No 132
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.0045 Score=60.69 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..+..+|.|=|.+||||-||+..+.+.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~k 31 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEK 31 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHH
Confidence 357789999999999999999999986
No 133
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.45 E-value=9.9e-05 Score=82.97 Aligned_cols=49 Identities=10% Similarity=-0.000 Sum_probs=35.9
Q ss_pred CCcEEEEEeCCHHHHH-HHH----HHhccccccCCcHHHHHHHHHHHHHhhccCC
Q 009257 356 IPDGFIYLRASPDTCH-KRM----MLRKRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 356 ~PDLIIYLdaspE~~l-eRI----kkRGRd~E~~i~leYLe~L~e~YEewl~~~~ 405 (539)
..|+.||++++.+.++ +|| ..||++.|. +-..|.+.+...|+.|+++.+
T Consensus 176 LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~Es-Vi~q~~~~VkP~y~~FIeP~k 229 (656)
T PLN02318 176 LLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEE-IIHQISETVYPMYKAFIEPDL 229 (656)
T ss_pred hCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHH-HHHHHHHhhcchHHHHhCcch
Confidence 4699999998766653 444 456776653 456788999999999998754
No 134
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.44 E-value=0.0076 Score=56.67 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=24.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHH
Q 009257 357 PDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLR 391 (539)
Q Consensus 357 PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe 391 (539)
|=.+|||+++++++.+|+..|..+ . .+.+-+.
T Consensus 91 ~~~~v~l~a~~~~l~~Rl~~R~~~-~--a~~~vl~ 122 (163)
T PRK11545 91 NLSFIYLKGDFDVIESRLKARKGH-F--FKTQMLV 122 (163)
T ss_pred CEEEEEEECCHHHHHHHHHhccCC-C--CCHHHHH
Confidence 457899999999999999999764 2 2555444
No 135
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.44 E-value=0.0012 Score=63.63 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.++.+|.+.|..||||||++..+.+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~ 38 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEE 38 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhh
Confidence 478899999999999999999999885
No 136
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.44 E-value=0.0051 Score=65.22 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHH
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHE 398 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YE 398 (539)
.+-.+||+++|+++|++|..+|++. ++.+=++.+...||
T Consensus 154 ~~~~~V~ld~ple~~l~RN~~R~~~----v~devie~m~~r~E 192 (340)
T TIGR03575 154 LGFCQLFLDCPVESCLLRNKQRPVP----LPDETIQLMGRKIE 192 (340)
T ss_pred CCEEEEEEeCCHHHHHHHHhcCCCC----CCHHHHHHHHHHhc
Confidence 3458999999999999999998743 34444444444444
No 137
>PLN02199 shikimate kinase
Probab=97.43 E-value=0.0094 Score=62.34 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.-|++-|..||||||+.+.|++. ++..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~-Lg~~ 129 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKV-LGYT 129 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 457899999999999999999986 6654
No 138
>PLN02459 probable adenylate kinase
Probab=97.43 E-value=0.001 Score=68.15 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++|.|+|-|++||||||+++.|++. +++.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~-~~~~ 56 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKL-LGVP 56 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 4577888999999999999999996 5644
No 139
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.41 E-value=0.00093 Score=69.89 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQER 300 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq~~ 300 (539)
.+.|+|-|..|+|||||++.|+.. ++.. +++|+.- .+.+....+...+...-...++...+....
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~-~~~~----~v~E~~R----------~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~ 226 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAV-FNTT----SAWEYAR----------EYVEEKLGGDEALQYSDYAQIALGQQRYID 226 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh-hCCC----EEeehhH----------HHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence 458999999999999999999985 5654 4556522 122222211111111100011111111111
Q ss_pred HhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhccc
Q 009257 301 ESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRA 380 (539)
Q Consensus 301 e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRGRd 380 (539)
........++++||..+.. .+|+...+ |...+ ++...... ...|+++++....+ ...=..|..+
T Consensus 227 ~~~~~a~~iif~D~~~~~t-~~y~~~~~--~~~~~--------~~~~~~~~---~~ydl~~l~~p~~~--~~~D~~R~~~ 290 (325)
T TIGR01526 227 YAVRHAHKIAFIDTDFITT-QVFAKQYE--GREHP--------FLDSDIAE---YPFDLTLLLKPNTE--WVDDGLRSLG 290 (325)
T ss_pred HHHhhcCCeEEEcCChHHH-HHHHHHHc--CCCCH--------HHHHHHHh---cCCCEEEECCCCCC--CccCCcccCc
Confidence 2222234688899999865 47766432 21111 11111121 25787777776655 5433334333
Q ss_pred cccCCcHHHHHHHHHHHHH
Q 009257 381 EEGGVSLDYLRSLHEKHEN 399 (539)
Q Consensus 381 ~E~~i~leYLe~L~e~YEe 399 (539)
.++ ....|.+.+.+.|++
T Consensus 291 ~~~-~R~~~~~ll~~~l~~ 308 (325)
T TIGR01526 291 SQK-QRQEFQQLLKKLLDE 308 (325)
T ss_pred hHH-HHHHHHHHHHHHHHH
Confidence 322 133455555555555
No 140
>PRK12338 hypothetical protein; Provisional
Probab=97.40 E-value=0.0021 Score=67.50 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|++.+|+|.|..||||||+++.|++. ++..
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~-l~~~ 31 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELART-LNIK 31 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH-CCCe
Confidence 45789999999999999999999996 6654
No 141
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.39 E-value=0.0027 Score=61.07 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..||||||+++.|+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999986
No 142
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.34 E-value=0.0024 Score=59.36 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.4
Q ss_pred cEEEEEeCCHHHHHHHHHHhcc
Q 009257 358 DGFIYLRASPDTCHKRMMLRKR 379 (539)
Q Consensus 358 DLIIYLdaspE~~leRIkkRGR 379 (539)
-.+|||+++++++.+|+..+..
T Consensus 86 g~vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 86 GLVIYLDADPEELAERLRARDN 107 (158)
T ss_dssp SEEEEEE--HHHHHHHHHHHCT
T ss_pred CEEEEEeCCHHHHHHHHhCCCC
Confidence 4799999999999999987764
No 143
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0011 Score=64.94 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++++|+|.|+.|+||||+++.|-+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999886
No 144
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.33 E-value=0.0012 Score=65.25 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.|+|+|.|+.||||||+++.|+++ +++.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~-~~~~ 29 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEK-LGYA 29 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 478999999999999999999986 5643
No 145
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.32 E-value=0.0032 Score=58.30 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+|+|.|.+||||||+++.|++.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999986
No 146
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.30 E-value=0.0036 Score=64.66 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..+++|+|.|..|+||||+++.|+..
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~l 105 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQAL 105 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHH
Confidence 56789999999999999999999984
No 147
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.28 E-value=0.00024 Score=61.80 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+|+|.|++||||||+++.|++. +++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~-~~~~ 26 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER-LGFP 26 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH-HTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HCCe
Confidence 5899999999999999999996 5644
No 148
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.26 E-value=0.0081 Score=67.07 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+...|++-|..||||||+.+.|++. ++..
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~-L~~~ 33 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQM-MRLP 33 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 45568999999999999999999996 6755
No 149
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.25 E-value=0.00021 Score=68.25 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
+|+|.|..||||||+++.|++. +.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~-l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ-LR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HH
Confidence 5899999999999999999986 44
No 150
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.19 E-value=0.0017 Score=66.45 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
+|+|.|.+||||||+++.|+.. +.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~l-l~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSL-FG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-hC
Confidence 5899999999999999999985 44
No 151
>PRK07429 phosphoribulokinase; Provisional
Probab=97.19 E-value=0.003 Score=66.40 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++.+|+|.|.+||||||+++.|++. ++.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~l-l~~ 34 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADL-LGE 34 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhH-hcc
Confidence 46789999999999999999999985 553
No 152
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.012 Score=56.95 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++++|+|.|+.||||||+++.|.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999999999875
No 153
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.10 E-value=0.0053 Score=63.69 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|+.||||||+++.|...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 154
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0019 Score=64.17 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
||..+|+|.|...+|||||++.|...+.+
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~ 30 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPG 30 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccC
Confidence 57789999999999999999999986433
No 155
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.03 E-value=0.014 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+|+|.|..||||||+++.|++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999986
No 156
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.0069 Score=58.40 Aligned_cols=121 Identities=21% Similarity=0.251 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhh-----hcCCCCCcHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAY-----YDAPERYAYTFQNYVFVTRV 296 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~F-----Y~Dp~r~Sf~~Ql~FLadR~ 296 (539)
-.|+|-|..||||||..++|++. |+.. ++. ++++..- .-.+++ +.|..||.+.-.+.-.+. .
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~-l~~~----F~d--gDd~Hp~-----~NveKM~~GipLnD~DR~pWL~~i~~~~~-~ 79 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEE-LGLK----FID--GDDLHPP-----ANVEKMTQGIPLNDDDRWPWLKKIAVELR-K 79 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHH-hCCc----ccc--cccCCCH-----HHHHHHhcCCCCCcccccHHHHHHHHHHH-H
Confidence 38999999999999999999997 6654 331 1222210 112333 346678887543321111 1
Q ss_pred HHHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhc-CCCCCCc---EEEEEeCCHHHHHH
Q 009257 297 MQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSV-LPGLIPD---GFIYLRASPDTCHK 372 (539)
Q Consensus 297 kq~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~-Lp~l~PD---LIIYLdaspE~~le 372 (539)
+... +. ++|+.- .++. ..|+++...-... -|+..|. .+|||.++.|++.+
T Consensus 80 ----~l~~--~q-----~vVlAC-----SaLK----------k~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~ 133 (191)
T KOG3354|consen 80 ----ALAS--GQ-----GVVLAC-----SALK----------KKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILK 133 (191)
T ss_pred ----Hhhc--CC-----eEEEEh-----HHHH----------HHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHH
Confidence 1111 12 222221 1221 3455554432110 1122332 68999999999999
Q ss_pred HHHHhcccc
Q 009257 373 RMMLRKRAE 381 (539)
Q Consensus 373 RIkkRGRd~ 381 (539)
|+.+|.-.+
T Consensus 134 Rl~~R~gHF 142 (191)
T KOG3354|consen 134 RLKKRKGHF 142 (191)
T ss_pred HHhhccccc
Confidence 999997643
No 157
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.0048 Score=63.11 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=99.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq 298 (539)
+...+|+|||.|+|||--.++.+.++ ++-.+ +-++.-+ .|.. .-..|-|| .|+-
T Consensus 72 ~~~vvivfEGrDAAGKgG~Ikri~~~-lNPR~-~rvval~--------------------aPt~-~E~~qwY~--qRy~- 125 (270)
T COG2326 72 GQRVVIVFEGRDAAGKGGAIKRITEA-LNPRG-ARVVALP--------------------APTD-RERGQWYF--QRYV- 125 (270)
T ss_pred CCeEEEEEecccccCCCchhHHHhhh-cCCce-eEEeecC--------------------CCCh-HhhccHHH--HHHH-
Confidence 56789999999999999999999986 66553 2232111 1110 01233332 4443
Q ss_pred HHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHH-HHHhhH--HHHHhcCCCCCCcEEEEEeCCHHHHHHHHH
Q 009257 299 ERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEIS-IYDSWF--DPVVSVLPGLIPDGFIYLRASPDTCHKRMM 375 (539)
Q Consensus 299 ~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~-iY~~l~--~~l~~~Lp~l~PDLIIYLdaspE~~leRIk 375 (539)
...+..+.++|+|||.|.... .. .-+|..++.++. .|.++- ..|..+- |+ -=+-+||.+|.++-++|..
T Consensus 126 --~~lPa~GeiviFdRSwYnr~g--Ve--RVmGfct~~q~~rfl~eip~FE~mL~~~-Gi-~l~Kfwl~Is~eeQ~~RF~ 197 (270)
T COG2326 126 --AHLPAAGEIVIFDRSWYNRAG--VE--RVMGFCTPKQYKRFLREIPEFERMLVES-GI-ILVKFWLSISREEQLERFL 197 (270)
T ss_pred --HhCCCCCeEEEechhhccccC--ee--eccccCCHHHHHHHHHHhhHHHHHHHhC-Ce-EEEEEEEeCCHHHHHHHHH
Confidence 234556789999999997642 11 125666766553 233322 2222111 11 1256789999999999999
Q ss_pred HhccccccC--------CcHHHHHHHHHHHHHhhccCC--CCCeEEEecCC
Q 009257 376 LRKRAEEGG--------VSLDYLRSLHEKHENWLFPFE--SGNHGVLAVSK 416 (539)
Q Consensus 376 kRGRd~E~~--------i~leYLe~L~e~YEewl~~~~--~~~~~VIdad~ 416 (539)
.|-.+-.+. .+.+++..-..+|++.+.+-. .....||.+|.
T Consensus 198 ~R~~dP~K~WKlSp~D~~~r~~WddYt~A~~em~~~T~T~~APW~vV~add 248 (270)
T COG2326 198 ERRNDPLKQWKLSPMDLESRDRWDDYTKAKDEMFARTSTPEAPWYVVPADD 248 (270)
T ss_pred HHhcCHHhccCCCHHHHHHHHhHHHHHHHHHHHHhccCCCCCCeEEEeCCc
Confidence 887654431 256777777788888875532 23566666554
No 158
>PHA00729 NTP-binding motif containing protein
Probab=96.98 E-value=0.0047 Score=62.08 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEE 382 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E 382 (539)
..+++++++++++.|.+|++.||-..+
T Consensus 118 R~~l~il~~ls~edL~~~Lr~Rg~~~~ 144 (226)
T PHA00729 118 RVSAVIFTTPSPEDLAFYLREKGWYQI 144 (226)
T ss_pred hCcEEEEecCCHHHHHHHHHhCCCcHH
Confidence 578999999999999999999986543
No 159
>PRK05439 pantothenate kinase; Provisional
Probab=96.98 E-value=0.0013 Score=68.94 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..||||||+++.|++.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999985
No 160
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.93 E-value=0.0084 Score=66.05 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.++.+|+|.|..|+||||++..|++. ++..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~-lg~~ 282 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYR-LGIT 282 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-cCCc
Confidence 35889999999999999999999996 6654
No 161
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.93 E-value=0.0015 Score=67.68 Aligned_cols=106 Identities=25% Similarity=0.295 Sum_probs=61.6
Q ss_pred CCCCCeeeccCCCCchHHHHHhhcccchHHHHHHHHHHHH---H----hhhhHHHhhhccccc-ccchhhh---------
Q 009257 131 VGNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---E----ASQKMIEYLQSSVGI-IHKNHAE--------- 193 (539)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~l~~~~~~-~~~~~~~--------- 193 (539)
+.+-+|-.||||||.-.++|.+.||.++.+|.++=.+... . ..+++.......+.. ......+
T Consensus 3 ~~~~~l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~ks~~ 82 (317)
T PRK04301 3 MKEKDLEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKNVG 82 (317)
T ss_pred cccccHhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhhccCC
Confidence 5677888999999999999999999999999754222221 1 223333332221111 0000000
Q ss_pred hhhhhhhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 194 SITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.++++..- .-| ...-.++.++-|.|..|+||||++-.++-.
T Consensus 83 ~~~Tg~~~lD-~~l-------~GGi~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 83 KITTGSKELD-ELL-------GGGIETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred ccCCCCHHHH-HHh-------cCCccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 0111111111 110 111236889999999999999999998753
No 162
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.87 E-value=0.012 Score=56.43 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHh-hhcC-CCCCcH--HHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGA-YYDA-PERYAY--TFQNYVFVTRVM 297 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~-FY~D-p~r~Sf--~~Ql~FLadR~k 297 (539)
+++.+.|.+|+|||||+..|+.. ++. .++|+.- ++ +.+. --.+ ..-|.= .|....+..++.
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~--Gfa----tvee~~r---~i------i~~es~~gg~~lPW~D~~afael~~~~~l~ 74 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARA--GFA----TVEEAGR---DI------IALESAQGGTALPWTDPGAFAELVGLQRLR 74 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHc--Cce----eeccchh---hH------HHHHHhcCCCcCCccChHHHHHHHHHHHHH
Confidence 57889999999999999999985 533 4556521 11 1110 0000 011321 111223344555
Q ss_pred HHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 009257 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLR 377 (539)
Q Consensus 298 q~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkR 377 (539)
|..... .+..+++||++... .+...+-.| ..+....+ .+.... ..+--|||--+...++.--..|
T Consensus 75 q~r~~~--~~~~vFfDR~~~da---~a~l~~lsg----a~la~~v~---~~~~~~---~Yn~rVfl~qp~~~iyqqde~R 139 (183)
T COG3911 75 QTRSAA--VGGRVFFDRGPPDA---LAYLRFLSG----ALLADEVA---TIVREG---RYNPRVFLVQPWPFIYQQDEER 139 (183)
T ss_pred Hhhccc--ccCceeeccCcHHH---HHHHHHhcc----cHHHHHHH---HHHHhc---CCCCcEEecCCccccccchhhc
Confidence 554322 34578999999843 333333233 32221111 111111 3445678877777777766666
Q ss_pred ccccccCCcHHHHHHHHHHHHHh
Q 009257 378 KRAEEGGVSLDYLRSLHEKHENW 400 (539)
Q Consensus 378 GRd~E~~i~leYLe~L~e~YEew 400 (539)
....++ -..+.+.+...|...
T Consensus 140 k~tlde--Av~~~e~lv~aYt~L 160 (183)
T COG3911 140 KITLDE--AVAFYEVLVAAYTEL 160 (183)
T ss_pred ccCHHH--HHHHHHHHHHHHHhc
Confidence 654443 345667777777764
No 163
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.85 E-value=0.016 Score=64.85 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|++.|.+||||||+++.+.+.
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~ 392 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQP 392 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
No 164
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=96.82 E-value=0.016 Score=56.16 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCC--CcHHHHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPER--YAYTFQNYVFVTRVMQE 299 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r--~Sf~~Ql~FLadR~kq~ 299 (539)
+.++|-|+-.||||||++.|+.. ++....||..+| +...+..+-.. ++=-.++ ..-.+ ++
T Consensus 9 K~VailG~ESsGKStLv~kLA~~-fnt~~~wEY~Re--------------~v~~~l~gdeal~y~Dy~~i--a~Gq~-~~ 70 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANI-FNTTSAWEYGRE--------------YVFEHLGGDEALQYSDYAKI--ALGQA-AY 70 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHH-hCCCchhHHHHH--------------HHHHHhCCchhhhhccHHHH--HhhhH-HH
Confidence 58899999999999999999996 676544443322 22222221110 1000111 00000 11
Q ss_pred HHh-cCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 009257 300 RES-SGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 300 ~e~-~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRG 378 (539)
.+. .....++.|+|--.++.. +|++.+. |...+ |+..++.+ ...|++|.|.-. +-. +..-.
T Consensus 71 ~d~av~~a~~v~fiDTD~itT~-~~~~~y~--gr~~P--------~~~~~i~~---~r~DL~lLl~p~--t~w--vaDG~ 132 (187)
T COG3172 71 EDAAVRYANKVAFIDTDFLTTQ-AFCKKYE--GREHP--------FLQALIAE---YRFDLTLLLEPN--TPW--VADGL 132 (187)
T ss_pred HHHHHhCCCceEEEeccHHHHH-HHHHHHc--ccCCc--------hHHHHHhh---cccceEEEcCCC--Cce--eCCCc
Confidence 111 122346888888888876 7877542 32222 22233333 258999988654 222 11122
Q ss_pred cccccCCcHHHHHHHHHHHHHhhccCC
Q 009257 379 RAEEGGVSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 379 Rd~E~~i~leYLe~L~e~YEewl~~~~ 405 (539)
|..+. ..=.+..|..-++|+..++
T Consensus 133 R~~~~---~~~R~~F~~~l~~~L~~~~ 156 (187)
T COG3172 133 RSLGS---SVQRQEFQNLLEQMLEENN 156 (187)
T ss_pred ccccc---HhHHHHHHHHHHHHHHHhC
Confidence 32221 1123455666677776543
No 165
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.70 E-value=0.025 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++|+|-|+.||||+|+++.|.+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999999999886
No 166
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.70 E-value=0.057 Score=56.56 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.++++|.|.|+.||||||++..|+++ ++..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~-l~~~ 119 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASR-LGIR 119 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 35799999999999999999999986 5644
No 167
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.66 E-value=0.027 Score=64.79 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.|+|.|+.||||||+++.|++. +++.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~-l~~~ 28 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQY-LGYA 28 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 48999999999999999999996 6644
No 168
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.61 E-value=0.0032 Score=64.69 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=56.0
Q ss_pred eccCCCCchHHHHHhhcccchHHHHHHHHHHHHH---h----hhhHHHhhhcccccc-cchhhhhhhhhhhhhhhhhh-c
Q 009257 138 TIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFWE---A----SQKMIEYLQSSVGII-HKNHAESITTFIKDSVDEEL-K 208 (539)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~ 208 (539)
.||||||.-.++|.+.||.++.+|.++=.+...+ . ..++.......++.. -....+.... +++..... .
T Consensus 3 ~i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~--~~s~~~~~Tg 80 (310)
T TIGR02236 3 DLPGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLER--RKTIGKITTG 80 (310)
T ss_pred ccCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHh--hccCCeecCC
Confidence 5899999999999999999999998654433321 2 222222222111110 0000000000 01110000 0
Q ss_pred CCCCCC--CCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 209 DSNSDD--KPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 209 ~~~~~~--~~~~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..+-+. ...-..+.++-|.|+.||||||++-.++-.
T Consensus 81 ~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 81 SKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 000000 011235789999999999999999998753
No 169
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.57 E-value=0.0019 Score=52.48 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+|+|+|.+||||||+++.|++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999986
No 170
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.49 E-value=0.014 Score=56.33 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+|.+-|+..|||||+++.|.+.
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~ 24 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQER 24 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHh
Confidence 468999999999999999999986
No 171
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.48 E-value=0.08 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++.|+|.|+.||||||+++.|.+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999875
No 172
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0026 Score=63.65 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+.|+|.||.||||||+++.|+++ |++.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~-Lg~~ 31 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEK-LGFH 31 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHH-hCCC
Confidence 389999999999999999999997 7765
No 173
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.36 E-value=0.027 Score=63.88 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.++.+|+++|..||||||+++.|+++ +.
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~-l~ 485 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERR-LH 485 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHH-HH
Confidence 46889999999999999999999986 44
No 174
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.24 E-value=0.0033 Score=58.66 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+|+|.|+.||||||+++.|++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 468999999999999999999985
No 175
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.23 E-value=0.004 Score=59.42 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++.+|+|.|++||||||+++.|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36789999999999999999999985
No 176
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=96.09 E-value=0.05 Score=62.16 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+.|+|.|+.||||||+++.|+++ +++.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~-~~~~ 469 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEA-LGYH 469 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHH-hCCe
Confidence 579999999999999999999997 6654
No 177
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.86 E-value=0.025 Score=59.35 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.|+||||++..|+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46789999999999999999999985
No 178
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.78 E-value=0.22 Score=56.25 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++.+|+|.|..||||||+++.|++. ++.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~-L~~ 418 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVK-LME 418 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHH-hhh
Confidence 56779999999999999999999996 553
No 179
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.76 E-value=0.01 Score=55.15 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
..+.+|++.|..||||||+++.|++. ++.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~-lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQG-LGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH-cCC
Confidence 34669999999999999999999985 554
No 180
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.73 E-value=0.044 Score=56.13 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|+.|+||||.+..|+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999999975
No 181
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.62 E-value=0.014 Score=53.57 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.++.+|++.|.-|||||||++.|++. ++..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~-lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARA-LGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHH-TT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 35679999999999999999999985 6644
No 182
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.59 E-value=0.012 Score=49.67 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..|.|.|+.|+||||+++.|+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc
Confidence 457899999999999999999986
No 183
>COG4639 Predicted kinase [General function prediction only]
Probab=95.56 E-value=0.053 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHhcccc
Q 009257 357 PDGFIYLRASPDTCHKRMMLRKRAE 381 (539)
Q Consensus 357 PDLIIYLdaspE~~leRIkkRGRd~ 381 (539)
-+.+|+|++|++.|++|.+.|.|..
T Consensus 97 ~~~~ivfdtp~~~c~aRNk~~~Rqv 121 (168)
T COG4639 97 KIYAIVFDTPLELCLARNKLRERQV 121 (168)
T ss_pred eEEEEEEeCCHHHHHHHhhccchhC
Confidence 4577999999999999998777653
No 184
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=95.50 E-value=0.044 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+++++|.+|+||||+++.+++ ++..
T Consensus 2 ~iVGLTGgiatGKStVs~~f~~--~G~~ 27 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFKA--LGIP 27 (225)
T ss_pred eEEEeecccccChHHHHHHHHH--cCCc
Confidence 3789999999999999999996 3543
No 185
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=95.48 E-value=0.013 Score=68.86 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=28.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+|++++|+|+|+.||||||+++.|+++ +++.
T Consensus 31 ~m~~~~i~idG~~gsGKst~~~~la~~-l~~~ 61 (863)
T PRK12269 31 PMGTVIIALDGPAGSGKSSVCRLLASR-LGAQ 61 (863)
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 588899999999999999999999996 6765
No 186
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=95.40 E-value=0.24 Score=51.62 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak 243 (539)
+|.|+|..||||||-++.|..
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED 23 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED 23 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh
Confidence 789999999999999999987
No 187
>PTZ00035 Rad51 protein; Provisional
Probab=95.40 E-value=0.034 Score=58.70 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=25.1
Q ss_pred CCeeeccCCCCchHHHHHhhcccchHHHHH
Q 009257 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQ 163 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (539)
-|-|.-|||||.-..||.++||.++.+|-.
T Consensus 23 ~~~l~~~g~~~~~~~kL~~~g~~t~~~~~~ 52 (337)
T PTZ00035 23 IEKLQSAGINAADIKKLKEAGICTVESVAY 52 (337)
T ss_pred HHHHhcCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 344556999999999999999999988753
No 188
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.037 Score=53.79 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEe
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIV 255 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV 255 (539)
++.+|+|-|+.|+||-|++..+... +....-..++
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~-l~~~~r~~fv 38 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARAR-LAGRPRLHFV 38 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHH-hccCCceEEE
Confidence 6789999999999999999999986 5555433443
No 189
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.37 E-value=0.017 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 224 FCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
|.|.|+.|+||||+++.|++. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~-l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY-LGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH-TTS
T ss_pred CEEECcCCCCeeHHHHHHHhh-ccc
Confidence 678999999999999999996 554
No 190
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.24 E-value=0.066 Score=54.95 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
.++.+|+|-|+.||||||++..|+.++
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357799999999999999999999863
No 191
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.23 E-value=0.023 Score=55.78 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+|+|.|+.|||||||.+.++.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 4677999999999999999999996
No 192
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.12 Score=49.98 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.++++|=|+|..||||||++=.|.+.+++
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~q 57 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQ 57 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHh
Confidence 58999999999999999999999997443
No 193
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.06 E-value=0.016 Score=53.00 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+|+|.|+.||||||+++.|.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999985
No 194
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.071 Score=57.38 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
.++-+|+|-|+.|+||||++..|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999863
No 195
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.91 E-value=0.021 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++-+++|.|..|||||||++.|...
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 5668999999999999999999874
No 196
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.84 E-value=0.026 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
....|++-|..||||||+++.|..
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999875
No 197
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.82 E-value=0.077 Score=58.92 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=31.7
Q ss_pred hhhhhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 196 TTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 196 ~~~i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
..++++...+.+..++.. .....++.+|+|-|+.||||||.+..|+..+
T Consensus 232 ~~~l~~~l~~~l~~~~~~-~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 232 LDWVQSALAKNLPVLDSE-DALLDRGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred HHHHHHHHHHHHhhccCc-cccccCCcEEEEECCCCccHHHHHHHHHHHH
Confidence 334555554444333221 1112356799999999999999999999863
No 198
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.74 E-value=0.066 Score=56.97 Aligned_cols=97 Identities=29% Similarity=0.340 Sum_probs=55.2
Q ss_pred CCeeeccCCCCchHHHHHhhcccchHHHH-----HHHH---------HHHHHhhhhHHHhhhcccccccch-------hh
Q 009257 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELK-----QLYK---------DKFWEASQKMIEYLQSSVGIIHKN-------HA 192 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~-------~~ 192 (539)
-|-|.-+||+|.-..||.+.||.++.+|- +|.+ +|..+...++++- +|..-. ..
T Consensus 31 ~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~~-----~~~ta~~~~~~~~~~ 105 (344)
T PLN03187 31 IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLLNQ-----GFITGSDALLKRKSV 105 (344)
T ss_pred HHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhhcc-----cCCcHHHHHhhhccC
Confidence 34455689999999999999999998874 4444 2222222232211 221111 00
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 193 ESITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 193 ~~~~~~i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
..|++-++. .|+-|+ ..-..+.++-|.|..|||||||+-.|+-
T Consensus 106 ~~isTG~~~-LD~lLg-------GGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 106 VRITTGSQA-LDELLG-------GGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred ceecCCcHh-HHhhcC-------CCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 111111111 111110 1123677889999999999999988863
No 199
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.036 Score=53.75 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
..|-|.|+|++|+||||+++.|++. |.-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~-L~~~ 32 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEK-LREK 32 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHH-HHhc
Confidence 4689999999999999999999986 4444
No 200
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.64 E-value=0.028 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||+++|+.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3577999999999999999999986
No 201
>PRK10646 ADP-binding protein; Provisional
Probab=94.59 E-value=0.036 Score=52.69 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+.+|++.|.-|||||||++.|++. ++..
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~-Lg~~ 55 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQA-LGHQ 55 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 3568999999999999999999985 6643
No 202
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.58 E-value=0.03 Score=56.42 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+..|.-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999985
No 203
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.57 E-value=0.03 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3577999999999999999999986
No 204
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.03 Score=57.14 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-|++|-|+.|||||||+++|+-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999996
No 205
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.52 E-value=0.031 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 206
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.49 E-value=0.034 Score=52.77 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 207
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.48 E-value=0.032 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||++.|+.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 208
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.48 E-value=0.033 Score=53.47 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3677999999999999999999986
No 209
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.44 E-value=0.034 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||+++|+.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 210
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.43 E-value=0.035 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 211
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.43 E-value=0.036 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 212
>PLN02840 tRNA dimethylallyltransferase
Probab=94.42 E-value=0.051 Score=59.34 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=27.1
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 216 PAPKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 216 ~~~~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
....++++|+|.|+.||||||++..|+++ ++.
T Consensus 16 ~~~~~~~vi~I~GptgsGKTtla~~La~~-~~~ 47 (421)
T PLN02840 16 SKTKKEKVIVISGPTGAGKSRLALELAKR-LNG 47 (421)
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHH-CCC
Confidence 34467789999999999999999999997 553
No 213
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.40 E-value=0.036 Score=52.97 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3577999999999999999999986
No 214
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.39 E-value=0.035 Score=54.00 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999874
No 215
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.39 E-value=0.034 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999986
No 216
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.37 E-value=0.036 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||++.|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 217
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.037 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||++.|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 218
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.30 E-value=0.035 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4677999999999999999999986
No 219
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.30 E-value=0.037 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3577999999999999999999986
No 220
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.27 E-value=0.038 Score=54.25 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||+++|+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4577999999999999999999986
No 221
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.26 E-value=0.039 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.233 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 222
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.25 E-value=0.039 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999986
No 223
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.25 E-value=0.041 Score=52.86 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 224
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.24 E-value=0.036 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4677999999999999999999986
No 225
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=94.20 E-value=0.032 Score=58.89 Aligned_cols=91 Identities=23% Similarity=0.265 Sum_probs=61.2
Q ss_pred CCCCCeeeccCCCCchHHHHHhhcccchHHHHHHHHHHHH---HhhhhHHHhhhcccccccchhhhhhhhhhhhhhhhhh
Q 009257 131 VGNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EASQKMIEYLQSSVGIIHKNHAESITTFIKDSVDEEL 207 (539)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 207 (539)
.+=-+|+.||||||+-.++|.+.||.+++||+++.++++- +.+-+..+.+.. =+.+..|..++..|.+.....
T Consensus 86 ~~l~~l~~i~GiGpk~a~~l~~lGi~tl~eL~~a~~~~l~~~q~~gl~~~~~~~~---ri~r~e~~~i~~~i~~~l~~~- 161 (334)
T smart00483 86 KSLKLFTNVFGVGPKTAAKWYRKGIRTLEELKKNKELKLTKQQKAGLKYYEDILK---KVSRAEAFAVEYIVKRAVRKI- 161 (334)
T ss_pred HHHHHHHccCCcCHHHHHHHHHhCCCCHHHHHhcccccCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhh-
Confidence 3456899999999999999999999999999988765421 222233333333 356788888877777666332
Q ss_pred cCCCCCCCCCCCCCeEEEEEcCCCCcHHH
Q 009257 208 KDSNSDDKPAPKKRITFCVEGNISVGKTT 236 (539)
Q Consensus 208 ~~~~~~~~~~~~K~m~IaIEG~IGSGKST 236 (539)
+ ....+.|.|..-=||.|
T Consensus 162 ---~--------~~~~v~i~GSyRRgket 179 (334)
T smart00483 162 ---L--------PDAIVTLTGSFRRGKET 179 (334)
T ss_pred ---C--------CCcEEEEecccccCCCc
Confidence 1 12255666766666655
No 226
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.20 E-value=0.042 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3577999999999999999999986
No 227
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.19 E-value=0.042 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||++.|+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 228
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.18 E-value=0.13 Score=56.20 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+|+|-|+.|+||||++..|+..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999875
No 229
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.041 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3577999999999999999999986
No 230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.045 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4577999999999999999999986
No 231
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.14 E-value=0.12 Score=56.50 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++.+|+|-|+.||||||++..|+.+
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999975
No 232
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.043 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 233
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=0.042 Score=53.77 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||++.|+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 234
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.12 E-value=0.043 Score=52.96 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3567999999999999999999986
No 235
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.11 E-value=0.043 Score=53.79 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 236
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.05 E-value=0.049 Score=51.16 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|+|||||++.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46779999999999999999999863
No 237
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=94.04 E-value=0.014 Score=46.34 Aligned_cols=30 Identities=43% Similarity=0.861 Sum_probs=26.9
Q ss_pred CeeeccCCCCchHHHHHhhcccchHHHHHH
Q 009257 135 DLLTIPGVGPRNLRKLVDNGIGDVAELKQL 164 (539)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (539)
+|+.||||||+..++|.+.||.++++|-.+
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a 35 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAGIKTLEDLANA 35 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTTCSSHHHHHTS
T ss_pred hhccCCCCCHHHHHHHHhcCCCcHHHHHcC
Confidence 578899999999999999999998888654
No 238
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.045 Score=53.45 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|||||||++.|+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 239
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.04 E-value=0.054 Score=51.47 Aligned_cols=29 Identities=31% Similarity=0.475 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
..+.+|++.|.-|||||||+|.|++. ++.
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~-Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKG-LGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHH-cCC
Confidence 56779999999999999999999985 663
No 240
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.047 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||++.|+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999985
No 241
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.98 E-value=0.048 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|+.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3677999999999999999999986
No 242
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.98 E-value=0.047 Score=54.11 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4677999999999999999999986
No 243
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.97 E-value=0.047 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIA 242 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLa 242 (539)
.++-+++|.|+.|||||||+++|.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467799999999999999999884
No 244
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.97 E-value=0.048 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 245
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.047 Score=53.72 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 246
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.044 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++ +++|-|+.|||||||+++|+.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhC
Confidence 46 899999999999999999986
No 247
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.95 E-value=0.048 Score=53.15 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||+++|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 248
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.95 E-value=0.049 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3567999999999999999999986
No 249
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.95 E-value=0.054 Score=58.08 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.+++++.+.|++|+||||+++.|++. ++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~-l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRG-LEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-Hhh
Confidence 35678999999999999999999986 544
No 250
>PRK13695 putative NTPase; Provisional
Probab=93.95 E-value=0.053 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
|.|+|.|..|+||||+++.|.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998875
No 251
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.95 E-value=0.048 Score=53.54 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 252
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.93 E-value=0.051 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3577999999999999999999986
No 253
>PRK14974 cell division protein FtsY; Provisional
Probab=93.92 E-value=0.15 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|+.|+||||.+..|+..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999875
No 254
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.91 E-value=0.049 Score=53.59 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 255
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.051 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|||||||++.|+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999863
No 256
>PF13173 AAA_14: AAA domain
Probab=93.91 E-value=0.061 Score=48.15 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+++|.|+-||||||+++.+++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999876
No 257
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.90 E-value=0.052 Score=50.92 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 258
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.90 E-value=0.046 Score=58.07 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-++++-|+.||||||++++|+-
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999996
No 259
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.89 E-value=0.052 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||+++|+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 260
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.86 E-value=0.053 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||+++|..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 261
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.85 E-value=0.051 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|||||||++.|+..
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999863
No 262
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.84 E-value=0.086 Score=54.35 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.+..+|.|+|++|+|||||+..|...+..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 46789999999999999999999987543
No 263
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.84 E-value=0.052 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46779999999999999999999863
No 264
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.81 E-value=0.051 Score=54.89 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
..++-+++|-|+.|||||||++.|-.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 35788999999999999999999964
No 265
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.80 E-value=0.055 Score=53.24 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 266
>PLN02796 D-glycerate 3-kinase
Probab=93.79 E-value=0.056 Score=57.64 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.++.+|+|.|..||||||+++.|... +.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~l-L~ 125 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYL-FN 125 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH-hc
Confidence 36789999999999999999999985 44
No 267
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.78 E-value=0.053 Score=53.72 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36779999999999999999999863
No 268
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.78 E-value=0.055 Score=52.26 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999986
No 269
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.054 Score=53.59 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 36779999999999999999999863
No 270
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.76 E-value=0.061 Score=46.23 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
|+|-|..|||||||++.|...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999874
No 271
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.76 E-value=0.053 Score=53.15 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999999999863
No 272
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.75 E-value=0.094 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+..|+|.|+.||||||+++.|...
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3558999999999999999999874
No 273
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.75 E-value=0.056 Score=52.28 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 35779999999999999999999863
No 274
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.75 E-value=0.054 Score=54.00 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999863
No 275
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.73 E-value=0.072 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
|+|.|.|+.||||||++..|++.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 68999999999999999999875
No 276
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.71 E-value=0.059 Score=50.38 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 277
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.059 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~g 46 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 278
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.68 E-value=0.057 Score=55.43 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+++|-|+.|||||||++.|+..
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999999999973
No 279
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.68 E-value=0.063 Score=48.25 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIA 242 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLa 242 (539)
.+.+++|-|+.||||||++++|.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 46799999999999999999986
No 280
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.67 E-value=0.057 Score=53.38 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36779999999999999999999863
No 281
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.67 E-value=0.057 Score=53.41 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 282
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.67 E-value=0.059 Score=51.05 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999863
No 283
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.66 E-value=0.057 Score=51.99 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 4677999999999999999999986
No 284
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.65 E-value=0.062 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 285
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.64 E-value=0.057 Score=53.54 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||+++|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 286
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=93.63 E-value=0.056 Score=54.57 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
|+|+|.|.+||||||+++.+++.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 68999999999999999999874
No 287
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.63 E-value=0.059 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36779999999999999999999863
No 288
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=93.63 E-value=0.28 Score=46.88 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+|+|.+-.|||++|+++.|++. |+..
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~-Lg~~ 26 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEK-LGYP 26 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHH-CT--
T ss_pred CEEECCCCCCChHHHHHHHHHH-cCCc
Confidence 6999999999999999999997 7765
No 289
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=93.62 E-value=0.067 Score=55.81 Aligned_cols=71 Identities=32% Similarity=0.465 Sum_probs=51.7
Q ss_pred CCCCeeeccCCCCchHHHHHhhcccchHHHHHHHHHHHH---HhhhhHHHhhhcccccccchhhhhhhhhhhhhhhh
Q 009257 132 GNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EASQKMIEYLQSSVGIIHKNHAESITTFIKDSVDE 205 (539)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 205 (539)
+=-+|+-||||||+-.++|.+.|+.++++|+.+--.|.- +.+-+..+..+. =+.+..|.+++..|.+....
T Consensus 83 ~l~~l~~i~GiGpk~a~~l~~lGi~sl~dL~~a~g~k~~~~i~~gl~~~~~~~~---ri~r~ea~~~a~~i~~~l~~ 156 (307)
T cd00141 83 GLLLLLRVPGVGPKTARKLYELGIRTLEDLRKAAGAKLEQNILIGLEYYEDFQQ---RIPREEALAIAEIIKEALRE 156 (307)
T ss_pred HHHHHHcCCCCCHHHHHHHHHcCCCCHHHHHHHhccccHHHHHHHHHHHHHhcC---CeEHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999999987633332 333333333333 36788888888778777643
No 290
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=93.61 E-value=0.056 Score=48.31 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak 243 (539)
|.|+|-|..||||||+++.|..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhC
Confidence 6899999999999999999974
No 291
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.61 E-value=0.062 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 292
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.60 E-value=0.061 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 293
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.59 E-value=0.061 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 294
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.58 E-value=0.063 Score=51.29 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999999863
No 295
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.58 E-value=0.079 Score=45.34 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..+.|.|+.|+||||+++.+.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999986
No 296
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.58 E-value=0.061 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46779999999999999999999863
No 297
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.57 E-value=0.062 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++.+++|.|..|||||||++.|+.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G 53 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLG 53 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999986
No 298
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.57 E-value=0.061 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++-+++|.|..|||||||++.|+..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5679999999999999999999863
No 299
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.57 E-value=0.062 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46779999999999999999999973
No 300
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.57 E-value=0.22 Score=53.92 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|++-|+.|+||||.+..|+.+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999975
No 301
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.062 Score=53.23 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 36779999999999999999999863
No 302
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.54 E-value=0.061 Score=53.77 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 36779999999999999999999863
No 303
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.54 E-value=0.11 Score=54.42 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
..+.++.|.|..|+||||++..|+.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHH
Confidence 4578999999999999999998875
No 304
>PRK10908 cell division protein FtsE; Provisional
Probab=93.53 E-value=0.064 Score=52.10 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 305
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.062 Score=53.89 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||+++|+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 306
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.51 E-value=0.062 Score=54.23 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46779999999999999999999863
No 307
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.51 E-value=0.066 Score=49.24 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|+|||||++.|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4677999999999999999999986
No 308
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.063 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 309
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.50 E-value=0.065 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999863
No 310
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.50 E-value=0.068 Score=52.18 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|||||||+++|+..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 36779999999999999999999863
No 311
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.49 E-value=0.064 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|+.
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 312
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.49 E-value=0.12 Score=51.72 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC-CceEEeeCCc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR-DLVEIVPEPI 259 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~-~~~EvV~EPi 259 (539)
.+..|+|.|+.||||||+++.|.+. +... .....+.++.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~-i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEE-IPPEDERIVTIEDPP 165 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH-CHTTTSEEEEEESSS
T ss_pred cceEEEEECCCccccchHHHHHhhh-ccccccceEEecccc
Confidence 3568899999999999999999986 4433 3334455553
No 313
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.49 E-value=0.069 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|+|||||++.|+..
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 35779999999999999999999863
No 314
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.48 E-value=0.066 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46779999999999999999999863
No 315
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.48 E-value=0.064 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 36779999999999999999999873
No 316
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.48 E-value=0.068 Score=51.10 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36779999999999999999999863
No 317
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.47 E-value=0.064 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999985
No 318
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.47 E-value=0.063 Score=46.59 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak 243 (539)
|+|-|..|||||||++.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 319
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.46 E-value=0.07 Score=51.29 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999986
No 320
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.45 E-value=0.066 Score=52.30 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++.+++|-|+.|||||||++.|+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4577999999999999999999986
No 321
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.45 E-value=0.064 Score=53.78 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||+++|+..
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36779999999999999999999863
No 322
>COG0645 Predicted kinase [General function prediction only]
Probab=93.43 E-value=0.2 Score=48.63 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++++.+-|..|+||||+++.|++. +++.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~-lgA~ 28 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAEL-LGAI 28 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhh-cCce
Confidence 367899999999999999999986 7765
No 323
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.43 E-value=0.067 Score=53.38 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35779999999999999999999873
No 324
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.41 E-value=0.067 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 325
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.38 E-value=0.069 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 326
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.064 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhccc
Confidence 46779999999999999999999873
No 327
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.35 E-value=0.07 Score=52.81 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 46779999999999999999999863
No 328
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.35 E-value=0.069 Score=53.99 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..++-+++|.|+.|||||||++.|+..
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357789999999999999999999873
No 329
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=93.34 E-value=0.072 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 330
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.33 E-value=0.072 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G 48 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAG 48 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 331
>PF05729 NACHT: NACHT domain
Probab=93.31 E-value=0.08 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++|.|..|+||||+++.+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 6899999999999999999986
No 332
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.31 E-value=0.066 Score=53.93 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3577999999999999999999986
No 333
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.30 E-value=0.074 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 334
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.30 E-value=0.075 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 224 FCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.+.|+.|+|||++++.|++. ++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~-~~~~ 26 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL-LGRP 26 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH-HTCE
T ss_pred EEEECCCCCCHHHHHHHHHHH-hhcc
Confidence 678999999999999999986 5543
No 335
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.29 E-value=0.13 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+|.|.|+.||||||++..|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988775
No 336
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.29 E-value=0.073 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35779999999999999999999863
No 337
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.28 E-value=0.074 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46779999999999999999999873
No 338
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.28 E-value=0.076 Score=51.57 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 339
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.27 E-value=0.072 Score=53.62 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|||||||+++|+..
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46779999999999999999999863
No 340
>PLN02165 adenylate isopentenyltransferase
Probab=93.26 E-value=0.082 Score=56.15 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
+++.+|+|-|+.|||||||+..|++. ++
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~-l~ 68 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATR-FP 68 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHH-cC
Confidence 46789999999999999999999986 45
No 341
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.26 E-value=0.073 Score=53.44 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4677999999999999999999986
No 342
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.26 E-value=0.072 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35779999999999999999999863
No 343
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.25 E-value=0.077 Score=51.06 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G 48 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 344
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.24 E-value=0.077 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|+|||||++.|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46779999999999999999999873
No 345
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.24 E-value=0.07 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4677999999999999999999986
No 346
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.21 E-value=0.078 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..++|-|..|||||||++.|...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999764
No 347
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.21 E-value=0.072 Score=53.82 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3577999999999999999999986
No 348
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.076 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3577999999999999999999986
No 349
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.20 E-value=0.078 Score=51.29 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46779999999999999999999863
No 350
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.20 E-value=0.077 Score=51.59 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|||||||+++|+..
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46779999999999999999999863
No 351
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.19 E-value=0.079 Score=46.32 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=19.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
...++|.|..|+||||+++.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999863
No 352
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.18 E-value=0.074 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35779999999999999999999863
No 353
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.17 E-value=0.1 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+..|.|..||||||++.++.-.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999753
No 354
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.16 E-value=0.08 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|+|||||++.|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999986
No 355
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.15 E-value=0.076 Score=53.63 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 356
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.15 E-value=0.079 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4677999999999999999999986
No 357
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.15 E-value=0.084 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+++|.|..|+||||+++.|+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567999999999999999999986
No 358
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.15 E-value=0.081 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|+|||||++.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 359
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.09 E-value=0.081 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 36779999999999999999999863
No 360
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.08 E-value=0.073 Score=53.44 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4678999999999999999999986
No 361
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=93.08 E-value=0.091 Score=55.02 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
+++++|+|.|+.||||||++..|+++ ++.
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~-~~~ 30 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKR-LNG 30 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHh-CCC
Confidence 35579999999999999999999986 443
No 362
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.07 E-value=0.084 Score=50.43 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
|.|+|.+|+||||+++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999999886
No 363
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.082 Score=53.23 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||+++|+..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36779999999999999999999873
No 364
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.082 Score=53.35 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 365
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.06 E-value=0.08 Score=52.91 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|||||||++.|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46779999999999999999999863
No 366
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.05 E-value=0.08 Score=53.89 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 36779999999999999999999874
No 367
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.03 E-value=0.082 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 368
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.02 E-value=0.076 Score=52.26 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4677999999999999999999986
No 369
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.01 E-value=0.086 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 370
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.00 E-value=0.085 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 371
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.99 E-value=0.085 Score=48.56 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=17.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..+..|.|.|..|+||||+++.+.+.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988775
No 372
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.98 E-value=0.1 Score=50.44 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++..+|+|.|..|||||||++.|... +...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~-l~~~ 33 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA-LCAR 33 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH-Hhhc
Confidence 34558999999999999999999875 4443
No 373
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.97 E-value=0.086 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4577999999999999999999985
No 374
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.97 E-value=0.085 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46779999999999999999999863
No 375
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.95 E-value=0.084 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36779999999999999999999863
No 376
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.94 E-value=0.08 Score=58.14 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++..|+|.|..||||||++++|..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3788999999999999999999986
No 377
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.94 E-value=0.63 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|++.|..||||||.+..|+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999975
No 378
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.92 E-value=0.09 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 379
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.92 E-value=0.1 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.|+|.|+.||||||+++.|.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999875
No 380
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=92.92 E-value=0.085 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 381
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.91 E-value=0.085 Score=53.72 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36779999999999999999999863
No 382
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.88 E-value=0.092 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++-+++|-|..|||||||++.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5679999999999999999999863
No 383
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.88 E-value=0.094 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||+++|+..
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46779999999999999999999863
No 384
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.87 E-value=0.09 Score=52.20 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999985
No 385
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.87 E-value=0.088 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999999999986
No 386
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=92.86 E-value=0.093 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3577999999999999999999986
No 387
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.86 E-value=0.092 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||++.|+.
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 388
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.84 E-value=0.096 Score=51.78 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46779999999999999999999873
No 389
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.83 E-value=0.093 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46779999999999999999999863
No 390
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.82 E-value=0.09 Score=53.05 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|||||||++.|+..
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36779999999999999999999863
No 391
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=92.82 E-value=0.093 Score=52.33 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-++.+.|+.|||||||+++|-..
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhh
Confidence 46778999999999999999999764
No 392
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.82 E-value=0.089 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999863
No 393
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.80 E-value=0.089 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak 243 (539)
.+++|-|..|||||||+++|+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999986
No 394
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=92.79 E-value=0.095 Score=52.77 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 36779999999999999999999873
No 395
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.78 E-value=0.089 Score=56.26 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-|+++=|+.||||||++++|+-
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4567999999999999999999996
No 396
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=92.72 E-value=0.067 Score=42.23 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=20.8
Q ss_pred eeccCCCCchHHHHHhhcccchHHHHH
Q 009257 137 LTIPGVGPRNLRKLVDNGIGDVAELKQ 163 (539)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (539)
.-|.||||.-.++++++|+.++++|++
T Consensus 5 ~~I~GVG~~tA~~w~~~G~rtl~Dl~~ 31 (52)
T PF10391_consen 5 TGIWGVGPKTARKWYAKGIRTLEDLRK 31 (52)
T ss_dssp HTSTT--HHHHHHHHHTT--SHHHHHH
T ss_pred hhcccccHHHHHHHHHhCCCCHHHHhh
Confidence 458999999999999999999999964
No 397
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=92.69 E-value=0.099 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999873
No 398
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.68 E-value=0.1 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||+++|+..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999973
No 399
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.67 E-value=0.096 Score=53.55 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|..
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhc
Confidence 3677999999999999999999986
No 400
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.67 E-value=0.1 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+|+|.|+.|+||||+++.|+.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 357999999999999999999984
No 401
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=92.66 E-value=0.12 Score=56.99 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELRD 250 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~~ 250 (539)
=|.|.|++|+|||||++.|++.+ ...+
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy-~~~G 291 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY-ASQG 291 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH-HhcC
Confidence 46779999999999999999964 4443
No 402
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=92.66 E-value=0.098 Score=53.78 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 403
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=92.64 E-value=0.1 Score=52.67 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||+++|+..
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999973
No 404
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=92.64 E-value=0.1 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4677999999999999999999986
No 405
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.64 E-value=0.13 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
+.+|++-|+.||||||.+-.|+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4689999999999999999999864
No 406
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.64 E-value=0.099 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~G 55 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999986
No 407
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.63 E-value=0.096 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+|.+-.
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999975
No 408
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.63 E-value=0.096 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3577999999999999999999986
No 409
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.61 E-value=0.19 Score=46.61 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETL 246 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L 246 (539)
++|.|.|..+||||||++.|.+++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999998744
No 410
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.61 E-value=0.099 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
+.+++|.|+.|+||||+++.|+.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 46899999999999999999985
No 411
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=92.58 E-value=0.1 Score=52.52 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35779999999999999999999863
No 412
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.58 E-value=0.14 Score=57.35 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=36.4
Q ss_pred ccchhhhhhhhhhhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 187 IHKNHAESITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.||.-.+.|..++++.... .....+..+.|+.||||||.++.|+++ ++..
T Consensus 23 vhkkKv~eV~~wl~~~~~~------------~~~~~iLlLtGP~G~GKtttv~~La~e-lg~~ 72 (519)
T PF03215_consen 23 VHKKKVEEVRSWLEEMFSG------------SSPKRILLLTGPSGCGKTTTVKVLAKE-LGFE 72 (519)
T ss_pred ccHHHHHHHHHHHHHHhcc------------CCCcceEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 4777777776666654411 122338899999999999999999997 6765
No 413
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=92.57 E-value=0.11 Score=45.82 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.|++-|..|+||||+++.|..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~ 23 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAG 23 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHC
Confidence 46799999999999999999875
No 414
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.56 E-value=0.11 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 415
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.55 E-value=0.18 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..+..+|.|.|..||||||+++.|...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999886
No 416
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=92.51 E-value=0.1 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|+|||||++.|+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAG 49 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3678999999999999999999986
No 417
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=92.47 E-value=0.1 Score=45.77 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak 243 (539)
|+|-|..|||||||++.|..
T Consensus 2 i~i~G~~~~GKssl~~~l~~ 21 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG 21 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc
Confidence 78999999999999999975
No 418
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=92.47 E-value=0.12 Score=56.66 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..||||||+++.|...
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~l 235 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYL 235 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 419
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.46 E-value=0.14 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
....-+.|.|+.|+||||+++.+++.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 34456789999999999999999986
No 420
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=92.45 E-value=0.11 Score=51.80 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 421
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.45 E-value=0.11 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|+.
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 422
>PLN02772 guanylate kinase
Probab=92.45 E-value=0.14 Score=55.69 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.+.|+|.|+.|||||||++.|.+.
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhh
Confidence 36789999999999999999999875
No 423
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=92.44 E-value=0.1 Score=46.11 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak 243 (539)
|++-|..|||||||++.|.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 424
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.41 E-value=0.12 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46779999999999999999999873
No 425
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.41 E-value=0.11 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36779999999999999999999863
No 426
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.41 E-value=0.11 Score=52.66 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999863
No 427
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.40 E-value=0.11 Score=52.76 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999999986
No 428
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.40 E-value=0.17 Score=53.21 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
..+..+|.|+|++|+||||++..|..++
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 4678899999999999999999999874
No 429
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=92.39 E-value=0.12 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999986
No 430
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.36 E-value=0.12 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|+|||||+++|+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3677999999999999999999986
No 431
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.34 E-value=0.11 Score=52.78 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|+|||||++.|+..
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 36779999999999999999999863
No 432
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=92.34 E-value=0.1 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4677999999999999999999986
No 433
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=92.34 E-value=0.11 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|..
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4677999999999999999999986
No 434
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=92.33 E-value=0.11 Score=52.26 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 36779999999999999999999863
No 435
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.32 E-value=0.13 Score=46.85 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhc
Confidence 3466799999999999999999976
No 436
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.31 E-value=0.12 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3677999999999999999999986
No 437
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.30 E-value=0.12 Score=52.00 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++-+++|.|..|||||||+++|+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5779999999999999999999863
No 438
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.30 E-value=0.089 Score=49.05 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 224 FCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.+||.+|+||||+++.|++. ++..
T Consensus 2 vLleg~PG~GKT~la~~lA~~-~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS-LGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH-TT--
T ss_pred EeeECCCccHHHHHHHHHHHH-cCCc
Confidence 679999999999999999985 6654
No 439
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.29 E-value=0.12 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4577999999999999999999986
No 440
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.29 E-value=0.12 Score=50.68 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|+|||||++.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999999999864
No 441
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.29 E-value=0.11 Score=53.22 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=24.5
Q ss_pred hhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHH
Q 009257 205 EELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRI 241 (539)
Q Consensus 205 ~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLaklL 241 (539)
.+|+.++.. -..+.+++|.|..|||||||++.+
T Consensus 9 ~nl~~v~~~----ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 9 NNLKNIDVD----IPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hcCCCceee----ccCCcEEEEECCCCCchHHHHHHH
Confidence 445544432 246789999999999999999854
No 442
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.27 E-value=0.11 Score=48.94 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
.|.|-|.+|||||||++.|...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4678899999999999999874
No 443
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=92.26 E-value=0.082 Score=46.61 Aligned_cols=36 Identities=39% Similarity=0.576 Sum_probs=31.3
Q ss_pred CCCCeeeccCCCCchHHHHHhhcccchHHHH-----HHHHH
Q 009257 132 GNPDLLTIPGVGPRNLRKLVDNGIGDVAELK-----QLYKD 167 (539)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 167 (539)
+..+|..||||||.-.+-|..-||.++++|+ ++|..
T Consensus 10 ~~~~L~~iP~IG~a~a~DL~~LGi~s~~~L~g~dP~~Ly~~ 50 (93)
T PF11731_consen 10 GLSDLTDIPNIGKATAEDLRLLGIRSPADLKGRDPEELYER 50 (93)
T ss_pred HHHHHhcCCCccHHHHHHHHHcCCCCHHHHhCCCHHHHHHH
Confidence 3457889999999999999999999999999 56643
No 444
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.25 E-value=0.12 Score=52.77 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 445
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.21 E-value=0.12 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~G 52 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNG 52 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 446
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.21 E-value=0.12 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||++.|+.
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3577999999999999999999986
No 447
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.20 E-value=0.12 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 448
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.20 E-value=0.19 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+|.|.|..||||||+++.|...
T Consensus 82 lilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhh
Confidence 7899999999999999988664
No 449
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.20 E-value=0.12 Score=52.37 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 46789999999999999999999863
No 450
>PRK13768 GTPase; Provisional
Probab=92.20 E-value=0.22 Score=50.37 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++|+|.|+.||||||++..++..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHH
Confidence 468999999999999999999985
No 451
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=92.19 E-value=0.12 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999863
No 452
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.17 E-value=0.12 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|..
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~G 55 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3677999999999999999999986
No 453
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.16 E-value=0.13 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
-+++|.|..|+||||+++.+.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHh
Confidence 37899999999999999999875
No 454
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.12 Score=55.13 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
-+.+|.+.|++|+|||||+|.|+++ |.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQk-LS 202 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQK-LS 202 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHh-he
Confidence 3569999999999999999999997 54
No 455
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=92.14 E-value=0.12 Score=54.78 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHC
Confidence 3567999999999999999999986
No 456
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.13 E-value=0.13 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|+|||||+++|+..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 46779999999999999999999863
No 457
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.13 E-value=0.13 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|+.
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3677999999999999999999986
No 458
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=92.12 E-value=0.12 Score=54.82 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+-
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHC
Confidence 3677999999999999999999987
No 459
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.12 E-value=0.12 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|..
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3678999999999999999999986
No 460
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.11 E-value=0.13 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||++.|+..
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35779999999999999999999863
No 461
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.11 E-value=0.12 Score=54.32 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||+++|+..
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 46779999999999999999999863
No 462
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.06 E-value=0.12 Score=45.72 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++|.|+.|+||||++..++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999875
No 463
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=92.05 E-value=0.15 Score=43.90 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.-|+|-|..|||||||+..|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999763
No 464
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.04 E-value=0.14 Score=51.26 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||++.|+..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 46779999999999999999999873
No 465
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=92.04 E-value=0.13 Score=54.42 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||+++|+..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999863
No 466
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=92.03 E-value=0.13 Score=54.34 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||+++|+..
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999873
No 467
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=92.02 E-value=0.13 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3577999999999999999999986
No 468
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.98 E-value=0.14 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||++.|+.
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G 47 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3577999999999999999999986
No 469
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=91.96 E-value=0.087 Score=58.53 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=20.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQ 239 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLak 239 (539)
..++-+|+|.|+.||||||+++
T Consensus 29 i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 29 LPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred ecCCCEEEEECCCCCCHHHHHh
Confidence 3567899999999999999999
No 470
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=91.93 E-value=0.14 Score=49.80 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++ +++|-|+.||||||+++.|.-
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHH
Confidence 45 899999999999999999974
No 471
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.93 E-value=0.16 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+|.+.|..|+||||++..|+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 472
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.92 E-value=0.75 Score=47.72 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+++.+|.|-|..|+||||++..|+.. |+-.
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~r-LgI~ 116 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARR-LGIR 116 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHH-cCCc
Confidence 56889999999999999999999986 6754
No 473
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.87 E-value=0.41 Score=54.00 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.|+||||++..|+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999875
No 474
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.85 E-value=0.41 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
++.+|+|-|+.|+||||.+..|+..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 46799999999999999999999753
No 475
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=91.79 E-value=0.18 Score=47.60 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|++||||||+++.|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 5667899999999999999999974
No 476
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=91.78 E-value=0.14 Score=54.29 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||+++|+..
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999873
No 477
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.76 E-value=0.44 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
++.+|+|-|+.||||||++..|+..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998753
No 478
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=91.74 E-value=0.13 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIA 242 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLa 242 (539)
+-+++|-|+.||||||++++|.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhe
Confidence 5589999999999999999996
No 479
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.73 E-value=0.46 Score=52.12 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.||||||++..|+..
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 34578999999999999999999975
No 480
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=91.71 E-value=0.15 Score=54.17 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++-+++|-|+.|||||||+++|+-
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaG 52 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 567999999999999999999997
No 481
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=91.67 E-value=0.15 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.||||||++++|...
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46779999999999999999999863
No 482
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.67 E-value=0.15 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|..|||||||+++|..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNG 55 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4677999999999999999999986
No 483
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.63 E-value=0.2 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+..|.|.|+.||||||+++.|...
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3457899999999999999999875
No 484
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.62 E-value=0.16 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|||||||+++|+..
T Consensus 69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 69 PEKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46779999999999999999999863
No 485
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=91.62 E-value=0.15 Score=54.69 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaG 62 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAG 62 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3577999999999999999999996
No 486
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.57 E-value=0.14 Score=56.91 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++..++|.|..||||||++++|...
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47889999999999999999999874
No 487
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.57 E-value=0.31 Score=54.27 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=52.9
Q ss_pred HHhhcccchHHHHHHHHHHHHHhhh-hHHHhhhcccccccchhhhhhhhhhhhhhhhhhcCCCCCCCCC-CCCCeEEEEE
Q 009257 150 LVDNGIGDVAELKQLYKDKFWEASQ-KMIEYLQSSVGIIHKNHAESITTFIKDSVDEELKDSNSDDKPA-PKKRITFCVE 227 (539)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~K~m~IaIE 227 (539)
+++.|.-+...+..+.+.|.--+.+ .+++|..+.+.|.+---.+.+-.++.+....- . ...... -..++-|.+.
T Consensus 190 ~~~~~~~~~~~~~~i~~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~-~---~~~~~~gl~~pkGILL~ 265 (489)
T CHL00195 190 IATYKTIDENSIPLILEEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF-S---KQASNYGLPTPRGLLLV 265 (489)
T ss_pred HHHcCCCChhhHHHHHHHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHHh-h---HHHHhcCCCCCceEEEE
Confidence 3455555555556566555543322 36777777766654444444433343322110 0 000001 1234457889
Q ss_pred cCCCCcHHHHHHHHHHHHhccC
Q 009257 228 GNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 228 G~IGSGKSTLaklLak~~L~a~ 249 (539)
|+.|+|||++++.|++. ++..
T Consensus 266 GPpGTGKTllAkaiA~e-~~~~ 286 (489)
T CHL00195 266 GIQGTGKSLTAKAIAND-WQLP 286 (489)
T ss_pred CCCCCcHHHHHHHHHHH-hCCC
Confidence 99999999999999986 5654
No 488
>PF13245 AAA_19: Part of AAA domain
Probab=91.54 E-value=0.2 Score=41.93 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=17.5
Q ss_pred CeEEEEEcCCCCcHH-HHHHHHHH
Q 009257 221 RITFCVEGNISVGKT-TFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKS-TLaklLak 243 (539)
..+.+|.|++|+||| |+++.++.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999 55555555
No 489
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.54 E-value=0.16 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|..|||||||+++|+..
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999999999863
No 490
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.44 E-value=0.16 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+-|+-|+.||||||+++.|-.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHh
Confidence 567899999999999999999975
No 491
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=91.43 E-value=0.18 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+.|+|-|..|+||||+++.|.+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~ 24 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLG 24 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhC
Confidence 45699999999999999999965
No 492
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=91.40 E-value=0.19 Score=53.39 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.++++|.|.|..|||||||++.|.+. +...
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~-l~~~ 32 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRR-LSER 32 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHH-HhhC
Confidence 46899999999999999999999886 4533
No 493
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=91.38 E-value=1.2 Score=45.57 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=36.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHH
Q 009257 357 PDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHEN 399 (539)
Q Consensus 357 PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEe 399 (539)
-..+||-.+|.++|.+=-..|..+.|.+-+.+-|+.|-..||+
T Consensus 102 t~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEe 144 (281)
T KOG3062|consen 102 TYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEE 144 (281)
T ss_pred eEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhC
Confidence 4589999999999988777777666666688899999999986
No 494
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.38 E-value=0.16 Score=56.36 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++-.++|.|..|||||||+++|...
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 6778999999999999999999874
No 495
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.37 E-value=0.18 Score=52.13 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.++++-|+.||||||++++|...
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999874
No 496
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.32 E-value=0.18 Score=51.12 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
-+.+-|++|+|||||++.|+++ ++..
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e-~~~~ 77 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE-LGVN 77 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH-CT--
T ss_pred eEEEECCCccchhHHHHHHHhc-cCCC
Confidence 5689999999999999999996 6654
No 497
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=91.30 E-value=0.17 Score=55.95 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++..|+|.|..|||||||+++|...
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 36789999999999999999999874
No 498
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.28 E-value=0.18 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|..|||||||+++|..
T Consensus 106 ~~Ge~v~IvG~~GsGKSTLl~~L~g 130 (329)
T PRK14257 106 KRNKVTAFIGPSGCGKSTFLRNLNQ 130 (329)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999986
No 499
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.25 E-value=0.24 Score=52.29 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEP 258 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EP 258 (539)
+.-|+|.|..||||||+++.|... .........++++
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~-ip~~~ri~tiEd~ 196 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALRE-IPAIERLITVEDA 196 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhh-CCCCCeEEEecCC
Confidence 346899999999999999999875 4433223344444
No 500
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.24 E-value=0.17 Score=44.25 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 009257 224 FCVEGNISVGKTTFLQRIANETL 246 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L 246 (539)
|-|-|..|+|||++++.|++..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999988643
Done!