Query 009257
Match_columns 539
No_of_seqs 274 out of 1451
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocp_A DGK, deoxyguanosine kin 100.0 1.2E-29 4.2E-34 244.3 19.6 224 220-481 1-240 (241)
2 1p5z_B DCK, deoxycytidine kina 99.9 2.2E-27 7.7E-32 231.7 16.4 181 219-403 22-221 (263)
3 1p6x_A Thymidine kinase; P-loo 99.9 6.8E-28 2.3E-32 248.4 10.9 176 219-404 5-204 (334)
4 4hlc_A DTMP kinase, thymidylat 99.9 1.9E-26 6.6E-31 221.1 17.8 167 221-404 2-174 (205)
5 2vp4_A Deoxynucleoside kinase; 99.9 2.2E-25 7.6E-30 214.2 16.6 178 218-404 17-194 (230)
6 1of1_A Thymidine kinase; trans 99.9 4.7E-26 1.6E-30 238.1 9.5 176 218-404 46-246 (376)
7 1e2k_A Thymidine kinase; trans 99.9 9.4E-26 3.2E-30 232.3 8.8 174 219-404 2-201 (331)
8 2jaq_A Deoxyguanosine kinase; 99.9 2.9E-24 9.8E-29 197.7 16.1 197 222-483 1-202 (205)
9 4edh_A DTMP kinase, thymidylat 99.9 1.4E-23 4.8E-28 202.6 20.4 168 219-404 4-180 (213)
10 3ld9_A DTMP kinase, thymidylat 99.9 7.7E-24 2.6E-28 206.8 17.2 165 219-404 19-190 (223)
11 1osn_A Thymidine kinase, VZV-T 99.9 3.4E-25 1.2E-29 229.0 7.9 175 218-402 9-211 (341)
12 4tmk_A Protein (thymidylate ki 99.9 7.7E-23 2.6E-27 197.7 20.6 166 219-402 1-179 (213)
13 3v9p_A DTMP kinase, thymidylat 99.9 1E-23 3.6E-28 206.1 11.7 168 219-404 23-200 (227)
14 3hjn_A DTMP kinase, thymidylat 99.9 1.1E-22 3.8E-27 193.5 17.1 162 222-404 1-165 (197)
15 3lv8_A DTMP kinase, thymidylat 99.9 3.8E-22 1.3E-26 196.1 18.6 170 217-404 23-203 (236)
16 3tmk_A Thymidylate kinase; pho 99.9 2.6E-22 9E-27 194.9 13.4 161 220-403 4-170 (216)
17 4eaq_A DTMP kinase, thymidylat 99.8 1.5E-19 5.1E-24 175.2 16.8 170 218-404 23-198 (229)
18 2z0h_A DTMP kinase, thymidylat 99.8 5.5E-18 1.9E-22 155.5 18.4 160 222-404 1-165 (197)
19 2plr_A DTMP kinase, probable t 99.7 4.6E-16 1.6E-20 143.7 18.2 158 219-401 2-180 (213)
20 2pbr_A DTMP kinase, thymidylat 99.7 7.7E-16 2.6E-20 140.3 18.3 157 222-402 1-164 (195)
21 2v54_A DTMP kinase, thymidylat 99.7 1.4E-15 4.6E-20 140.6 15.9 155 220-402 3-162 (204)
22 1nn5_A Similar to deoxythymidy 99.6 7.2E-15 2.4E-19 136.5 18.0 161 220-402 8-172 (215)
23 3kb2_A SPBC2 prophage-derived 99.6 4.6E-15 1.6E-19 132.7 15.0 138 222-404 2-139 (173)
24 1gtv_A TMK, thymidylate kinase 99.6 1.1E-15 3.7E-20 142.3 5.5 180 222-416 1-198 (214)
25 2wwf_A Thymidilate kinase, put 99.5 3.8E-14 1.3E-18 131.6 12.3 161 219-401 8-172 (212)
26 1nks_A Adenylate kinase; therm 99.4 7.9E-13 2.7E-17 120.0 13.5 154 222-404 2-167 (194)
27 3czq_A Putative polyphosphate 99.4 1.3E-12 4.3E-17 133.4 13.6 149 219-403 84-245 (304)
28 1tev_A UMP-CMP kinase; ploop, 99.3 5.7E-11 1.9E-15 107.9 18.9 130 219-379 1-136 (196)
29 2rhm_A Putative kinase; P-loop 99.3 1.6E-11 5.4E-16 112.1 13.2 30 219-249 3-32 (193)
30 3a4m_A L-seryl-tRNA(SEC) kinas 99.3 1.3E-10 4.6E-15 113.6 18.4 152 220-416 3-156 (260)
31 1kht_A Adenylate kinase; phosp 99.2 1.9E-10 6.3E-15 104.4 14.2 48 356-403 114-164 (192)
32 2c95_A Adenylate kinase 1; tra 99.2 5.8E-10 2E-14 101.9 16.8 28 220-248 8-35 (196)
33 2cdn_A Adenylate kinase; phosp 99.2 3.6E-10 1.2E-14 105.0 15.5 31 218-249 17-47 (201)
34 3czp_A Putative polyphosphate 99.2 1.6E-10 5.4E-15 125.0 14.3 150 219-403 41-202 (500)
35 1qf9_A UMP/CMP kinase, protein 99.1 2E-09 7E-14 97.4 18.1 28 220-248 5-32 (194)
36 3czp_A Putative polyphosphate 99.1 1.8E-10 6E-15 124.6 12.6 149 219-403 298-459 (500)
37 2bwj_A Adenylate kinase 5; pho 99.1 6.1E-10 2.1E-14 102.0 14.0 28 220-248 11-38 (199)
38 3t61_A Gluconokinase; PSI-biol 99.1 5.3E-10 1.8E-14 103.9 13.5 29 220-249 17-45 (202)
39 3lw7_A Adenylate kinase relate 99.1 1E-09 3.4E-14 97.0 13.5 25 356-380 101-125 (179)
40 2xb4_A Adenylate kinase; ATP-b 99.1 9.6E-10 3.3E-14 104.8 13.8 26 222-248 1-26 (223)
41 3be4_A Adenylate kinase; malar 99.1 2.2E-09 7.5E-14 101.6 14.6 29 220-249 4-32 (217)
42 1aky_A Adenylate kinase; ATP:A 99.0 4.7E-09 1.6E-13 99.0 15.4 28 220-248 3-30 (220)
43 1zak_A Adenylate kinase; ATP:A 99.0 5.3E-09 1.8E-13 98.8 15.7 28 220-248 4-31 (222)
44 1ak2_A Adenylate kinase isoenz 99.0 8.1E-09 2.8E-13 98.7 16.9 29 219-248 14-42 (233)
45 2yvu_A Probable adenylyl-sulfa 99.0 3.7E-09 1.3E-13 97.0 13.6 32 216-248 8-39 (186)
46 3fb4_A Adenylate kinase; psych 99.0 6.1E-09 2.1E-13 97.3 15.1 27 222-249 1-27 (216)
47 1ukz_A Uridylate kinase; trans 99.0 2E-08 6.8E-13 93.0 17.8 30 218-248 12-41 (203)
48 3dl0_A Adenylate kinase; phosp 99.0 5.7E-09 1.9E-13 97.8 13.5 27 222-249 1-27 (216)
49 3cm0_A Adenylate kinase; ATP-b 99.0 1.2E-08 4E-13 92.8 14.8 29 219-248 2-30 (186)
50 1ly1_A Polynucleotide kinase; 99.0 9E-09 3.1E-13 92.4 13.8 139 221-401 2-147 (181)
51 2vli_A Antibiotic resistance p 98.9 5.5E-09 1.9E-13 94.6 12.3 30 219-249 3-32 (183)
52 3tlx_A Adenylate kinase 2; str 98.9 3.2E-08 1.1E-12 95.9 16.7 29 219-248 27-55 (243)
53 1e4v_A Adenylate kinase; trans 98.9 2E-08 6.7E-13 94.5 13.7 27 222-249 1-27 (214)
54 4eun_A Thermoresistant glucoki 98.8 1.4E-08 4.9E-13 94.6 10.6 27 220-247 28-54 (200)
55 3vaa_A Shikimate kinase, SK; s 98.8 7.8E-08 2.7E-12 89.6 15.4 29 220-249 24-52 (199)
56 1m7g_A Adenylylsulfate kinase; 98.8 5.6E-08 1.9E-12 91.4 12.4 26 219-244 23-48 (211)
57 1zd8_A GTP:AMP phosphotransfer 98.8 1.7E-08 5.9E-13 95.7 8.7 29 219-248 5-33 (227)
58 2pt5_A Shikimate kinase, SK; a 98.7 2.2E-08 7.5E-13 89.6 8.9 27 222-249 1-27 (168)
59 3umf_A Adenylate kinase; rossm 98.7 1.5E-07 5.2E-12 91.3 15.1 31 218-249 26-56 (217)
60 1knq_A Gluconate kinase; ALFA/ 98.7 6.3E-07 2.1E-11 81.0 17.7 29 218-247 5-33 (175)
61 2qt1_A Nicotinamide riboside k 98.7 1.2E-07 4E-12 88.4 13.1 44 356-401 129-173 (207)
62 3iij_A Coilin-interacting nucl 98.7 8.7E-08 3E-12 87.2 11.2 49 356-404 96-144 (180)
63 3rhf_A Putative polyphosphate 98.7 2.4E-07 8E-12 94.1 14.0 152 219-403 73-234 (289)
64 1ltq_A Polynucleotide kinase; 98.6 8.9E-07 3.1E-11 86.9 17.5 42 356-400 105-146 (301)
65 3trf_A Shikimate kinase, SK; a 98.6 2.8E-07 9.4E-12 83.9 12.9 28 221-249 5-32 (185)
66 3sr0_A Adenylate kinase; phosp 98.6 6.5E-07 2.2E-11 85.8 14.4 27 222-249 1-27 (206)
67 1vht_A Dephospho-COA kinase; s 98.6 7E-07 2.4E-11 83.8 13.6 24 220-243 3-26 (218)
68 1uj2_A Uridine-cytidine kinase 98.5 3E-07 1E-11 88.9 10.8 30 219-249 20-49 (252)
69 1zuh_A Shikimate kinase; alpha 98.5 2.7E-07 9.2E-12 83.0 9.0 27 222-249 8-34 (168)
70 1e6c_A Shikimate kinase; phosp 98.5 3.7E-07 1.3E-11 81.8 9.8 26 222-248 3-28 (173)
71 1x6v_B Bifunctional 3'-phospho 98.5 3E-07 1E-11 102.0 10.5 27 219-246 50-76 (630)
72 2iyv_A Shikimate kinase, SK; t 98.5 3E-07 1E-11 83.7 7.7 28 221-249 2-29 (184)
73 1via_A Shikimate kinase; struc 98.4 3E-07 1E-11 83.5 7.2 25 223-248 6-30 (175)
74 1y63_A LMAJ004144AAA protein; 98.4 1.1E-06 3.8E-11 80.9 11.1 27 218-244 7-33 (184)
75 1cke_A CK, MSSA, protein (cyti 98.4 3.3E-06 1.1E-10 79.0 14.2 26 221-247 5-30 (227)
76 1kag_A SKI, shikimate kinase I 98.4 1.5E-06 5.2E-11 77.9 10.4 26 221-247 4-29 (173)
77 2pez_A Bifunctional 3'-phospho 98.4 2.1E-06 7E-11 78.1 11.2 26 219-244 3-28 (179)
78 2f6r_A COA synthase, bifunctio 98.4 4.5E-06 1.5E-10 82.8 13.9 28 219-248 73-100 (281)
79 3asz_A Uridine kinase; cytidin 98.3 1.2E-05 4E-10 74.7 15.3 81 356-483 124-209 (211)
80 1qhx_A CPT, protein (chloramph 98.3 2.3E-06 7.9E-11 77.1 10.0 29 219-248 1-29 (178)
81 3nwj_A ATSK2; P loop, shikimat 98.3 2.6E-06 8.8E-11 84.1 11.2 28 220-248 47-74 (250)
82 4e22_A Cytidylate kinase; P-lo 98.3 2.6E-06 9E-11 82.9 11.0 29 219-248 25-53 (252)
83 3fdi_A Uncharacterized protein 98.2 1.8E-05 6.2E-10 75.0 14.7 30 219-249 4-33 (201)
84 2if2_A Dephospho-COA kinase; a 98.2 2.9E-06 9.8E-11 78.5 8.8 24 356-379 123-146 (204)
85 1svm_A Large T antigen; AAA+ f 98.2 1.8E-08 6.3E-13 105.2 -6.7 50 356-405 300-354 (377)
86 1jjv_A Dephospho-COA kinase; P 98.2 1.3E-05 4.4E-10 74.3 12.2 26 222-249 3-28 (206)
87 3gmt_A Adenylate kinase; ssgci 98.2 2.6E-06 9E-11 83.7 7.1 29 220-249 7-35 (230)
88 2bbw_A Adenylate kinase 4, AK4 98.1 2.8E-05 9.6E-10 74.6 13.9 29 220-249 26-54 (246)
89 3hdt_A Putative kinase; struct 98.1 4.4E-05 1.5E-09 74.1 15.2 30 219-249 12-41 (223)
90 3ake_A Cytidylate kinase; CMP 98.1 7.1E-05 2.4E-09 68.6 15.4 25 223-248 4-28 (208)
91 3tr0_A Guanylate kinase, GMP k 98.1 4E-05 1.4E-09 70.3 13.6 25 220-244 6-30 (205)
92 4i1u_A Dephospho-COA kinase; s 98.1 1.4E-05 4.6E-10 77.5 10.0 26 222-249 10-35 (210)
93 2h92_A Cytidylate kinase; ross 98.0 6.5E-05 2.2E-09 70.0 14.1 29 219-248 1-29 (219)
94 2qor_A Guanylate kinase; phosp 98.0 0.00011 3.6E-09 68.6 14.8 25 220-244 11-35 (204)
95 2grj_A Dephospho-COA kinase; T 98.0 2.8E-05 9.7E-10 73.5 10.2 29 220-249 11-39 (192)
96 2gks_A Bifunctional SAT/APS ki 97.9 1.7E-05 5.9E-10 86.4 7.3 28 220-248 371-398 (546)
97 1a7j_A Phosphoribulokinase; tr 97.8 2.7E-05 9.4E-10 77.9 7.9 48 356-405 147-199 (290)
98 3uie_A Adenylyl-sulfate kinase 97.8 0.00053 1.8E-08 63.6 15.4 26 219-244 23-48 (200)
99 1gvn_B Zeta; postsegregational 97.8 0.00025 8.7E-09 70.6 13.8 27 218-244 30-56 (287)
100 3c8u_A Fructokinase; YP_612366 97.8 0.00029 1E-08 65.9 13.3 26 219-244 20-45 (208)
101 3r20_A Cytidylate kinase; stru 97.8 0.00015 5.1E-09 71.1 11.7 29 219-248 7-35 (233)
102 3zvl_A Bifunctional polynucleo 97.7 0.00014 4.8E-09 76.1 11.8 26 219-244 256-281 (416)
103 1q3t_A Cytidylate kinase; nucl 97.7 0.00049 1.7E-08 65.6 14.2 29 219-248 14-42 (236)
104 1rz3_A Hypothetical protein rb 97.7 9E-05 3.1E-09 69.1 8.7 26 219-244 20-45 (201)
105 2p5t_B PEZT; postsegregational 97.6 0.00066 2.3E-08 65.7 12.7 29 218-247 29-57 (253)
106 1m8p_A Sulfate adenylyltransfe 97.4 0.00079 2.7E-08 73.8 11.9 29 219-248 394-422 (573)
107 2ze6_A Isopentenyl transferase 97.3 0.00077 2.6E-08 65.6 10.0 27 222-249 2-28 (253)
108 2axn_A 6-phosphofructo-2-kinas 97.2 0.0021 7.3E-08 69.5 12.1 29 220-249 34-62 (520)
109 2j41_A Guanylate kinase; GMP, 97.0 0.00038 1.3E-08 63.7 4.0 26 219-244 4-29 (207)
110 1ex7_A Guanylate kinase; subst 97.0 0.0061 2.1E-07 57.6 11.8 22 223-244 3-24 (186)
111 1uf9_A TT1252 protein; P-loop, 96.9 0.00066 2.2E-08 61.9 4.1 27 218-244 5-31 (203)
112 1pzn_A RAD51, DNA repair and r 96.9 0.0009 3.1E-08 68.6 5.4 103 134-244 35-154 (349)
113 1kgd_A CASK, peripheral plasma 96.6 0.0014 4.8E-08 59.9 3.9 26 219-244 3-28 (180)
114 1zp6_A Hypothetical protein AT 96.5 0.0015 5E-08 59.2 3.5 26 219-244 7-32 (191)
115 2jeo_A Uridine-cytidine kinase 96.4 0.0019 6.5E-08 61.9 4.2 29 219-248 23-51 (245)
116 3a8t_A Adenylate isopentenyltr 96.4 0.013 4.3E-07 60.7 10.5 27 220-247 39-65 (339)
117 3tau_A Guanylate kinase, GMP k 96.3 0.0023 7.9E-08 60.0 3.9 25 220-244 7-31 (208)
118 3b9q_A Chloroplast SRP recepto 96.3 0.0087 3E-07 60.3 8.0 26 219-244 98-123 (302)
119 2yhs_A FTSY, cell division pro 96.2 0.0083 2.9E-07 65.1 7.8 47 198-244 270-316 (503)
120 3ney_A 55 kDa erythrocyte memb 96.1 0.0036 1.2E-07 59.8 4.1 27 218-244 16-42 (197)
121 2bdt_A BH3686; alpha-beta prot 96.0 0.0037 1.3E-07 56.8 3.7 24 221-244 2-25 (189)
122 3lnc_A Guanylate kinase, GMP k 96.0 0.0025 8.5E-08 60.2 2.3 26 219-244 25-51 (231)
123 3a00_A Guanylate kinase, GMP k 95.9 0.0036 1.2E-07 57.4 3.1 23 222-244 2-24 (186)
124 1bif_A 6-phosphofructo-2-kinas 95.9 0.1 3.5E-06 55.0 14.3 28 219-247 37-64 (469)
125 2og2_A Putative signal recogni 95.9 0.017 5.9E-07 59.8 8.2 26 219-244 155-180 (359)
126 1ye8_A Protein THEP1, hypothet 95.8 0.0052 1.8E-07 57.0 3.6 25 222-247 1-25 (178)
127 1sq5_A Pantothenate kinase; P- 95.7 0.007 2.4E-07 60.5 4.4 26 219-244 78-103 (308)
128 1odf_A YGR205W, hypothetical 3 95.7 0.0079 2.7E-07 60.2 4.7 26 219-244 29-54 (290)
129 1lvg_A Guanylate kinase, GMP k 95.6 0.0054 1.9E-07 57.2 3.0 25 220-244 3-27 (198)
130 3aez_A Pantothenate kinase; tr 95.5 0.01 3.5E-07 60.0 4.9 27 218-244 87-113 (312)
131 1znw_A Guanylate kinase, GMP k 95.5 0.0088 3E-07 55.7 3.8 28 217-244 16-43 (207)
132 1rj9_A FTSY, signal recognitio 95.5 0.021 7.2E-07 57.6 6.9 26 219-244 100-125 (304)
133 1z6g_A Guanylate kinase; struc 95.4 0.0073 2.5E-07 57.2 3.2 26 219-244 21-46 (218)
134 2i1q_A DNA repair and recombin 95.4 0.0098 3.4E-07 59.2 4.3 34 134-167 3-36 (322)
135 3tqc_A Pantothenate kinase; bi 95.4 0.0097 3.3E-07 60.8 4.3 28 219-247 90-117 (321)
136 1htw_A HI0065; nucleotide-bind 95.4 0.011 3.7E-07 54.1 4.1 26 219-244 31-56 (158)
137 1s96_A Guanylate kinase, GMP k 95.4 0.0091 3.1E-07 57.3 3.8 26 219-244 14-39 (219)
138 1vma_A Cell division protein F 95.2 0.044 1.5E-06 55.4 8.4 26 219-244 102-127 (306)
139 4gp7_A Metallophosphoesterase; 95.2 0.012 4E-07 53.5 3.7 23 220-242 8-30 (171)
140 2ehv_A Hypothetical protein PH 94.9 0.015 5.2E-07 54.3 3.6 25 219-243 28-52 (251)
141 4a74_A DNA repair and recombin 94.8 0.018 6.2E-07 53.1 3.8 26 219-244 23-48 (231)
142 3exa_A TRNA delta(2)-isopenten 94.8 0.017 6E-07 59.4 4.0 26 219-244 1-26 (322)
143 3kl4_A SRP54, signal recogniti 94.6 0.13 4.4E-06 54.7 10.1 26 219-244 95-120 (433)
144 3lda_A DNA repair protein RAD5 94.6 0.046 1.6E-06 57.4 6.7 25 219-243 176-200 (400)
145 3tif_A Uncharacterized ABC tra 94.6 0.017 5.7E-07 55.9 3.1 25 219-243 29-53 (235)
146 2eyu_A Twitching motility prot 94.6 0.037 1.3E-06 54.4 5.6 26 219-244 23-48 (261)
147 2pcj_A ABC transporter, lipopr 94.5 0.017 5.8E-07 55.3 3.0 24 220-243 29-52 (224)
148 1zu4_A FTSY; GTPase, signal re 94.5 0.096 3.3E-06 53.1 8.6 26 219-244 103-128 (320)
149 3ec2_A DNA replication protein 94.5 0.02 6.9E-07 51.6 3.3 25 220-244 37-61 (180)
150 2cbz_A Multidrug resistance-as 94.5 0.018 6.2E-07 55.7 3.1 25 219-243 29-53 (237)
151 2pze_A Cystic fibrosis transme 94.5 0.018 6.2E-07 55.3 3.1 25 219-243 32-56 (229)
152 3crm_A TRNA delta(2)-isopenten 94.5 0.022 7.5E-07 58.5 3.8 26 221-247 5-30 (323)
153 2fmp_A DNA polymerase beta; nu 94.4 0.012 4E-07 60.6 1.6 69 134-206 98-169 (335)
154 1mv5_A LMRA, multidrug resista 94.4 0.022 7.4E-07 55.2 3.4 25 219-243 26-50 (243)
155 2d2e_A SUFC protein; ABC-ATPas 94.4 0.024 8.1E-07 55.2 3.6 25 219-243 27-51 (250)
156 3d3q_A TRNA delta(2)-isopenten 94.3 0.028 9.6E-07 58.1 4.3 25 222-247 8-32 (340)
157 2ff7_A Alpha-hemolysin translo 94.3 0.021 7.1E-07 55.7 3.1 25 219-243 33-57 (247)
158 1dek_A Deoxynucleoside monopho 94.3 0.026 8.8E-07 55.5 3.8 26 222-248 2-27 (241)
159 1ji0_A ABC transporter; ATP bi 94.3 0.022 7.5E-07 55.1 3.1 25 219-243 30-54 (240)
160 2wjg_A FEOB, ferrous iron tran 94.2 0.034 1.2E-06 49.4 4.1 26 218-243 4-29 (188)
161 2zu0_C Probable ATP-dependent 94.1 0.028 9.5E-07 55.4 3.6 25 219-243 44-68 (267)
162 2ghi_A Transport protein; mult 94.1 0.025 8.4E-07 55.6 3.1 25 219-243 44-68 (260)
163 1g6h_A High-affinity branched- 94.1 0.025 8.4E-07 55.3 3.1 25 219-243 31-55 (257)
164 3lxx_A GTPase IMAP family memb 94.1 0.029 9.9E-07 53.0 3.5 25 219-243 27-51 (239)
165 2ixe_A Antigen peptide transpo 94.1 0.025 8.5E-07 55.9 3.1 25 219-243 43-67 (271)
166 2ce2_X GTPase HRAS; signaling 94.0 0.037 1.3E-06 47.2 3.8 26 219-244 1-26 (166)
167 1b0u_A Histidine permease; ABC 94.0 0.026 8.7E-07 55.5 3.1 25 219-243 30-54 (262)
168 1vpl_A ABC transporter, ATP-bi 94.0 0.026 8.9E-07 55.5 3.1 25 219-243 39-63 (256)
169 1kao_A RAP2A; GTP-binding prot 94.0 0.039 1.3E-06 47.3 3.8 25 219-243 1-25 (167)
170 1sgw_A Putative ABC transporte 94.0 0.022 7.6E-07 54.6 2.5 25 219-243 33-57 (214)
171 1g8f_A Sulfate adenylyltransfe 93.9 0.046 1.6E-06 59.3 5.2 29 219-248 393-421 (511)
172 2bcq_A DNA polymerase lambda; 93.9 0.021 7.1E-07 58.8 2.3 69 134-205 95-165 (335)
173 3gfo_A Cobalt import ATP-bindi 93.9 0.026 8.9E-07 56.2 3.0 25 219-243 32-56 (275)
174 4g1u_C Hemin import ATP-bindin 93.9 0.027 9.3E-07 55.6 3.1 25 219-243 35-59 (266)
175 2qi9_C Vitamin B12 import ATP- 93.9 0.028 9.5E-07 55.1 3.1 25 219-243 24-48 (249)
176 1lw7_A Transcriptional regulat 93.9 0.049 1.7E-06 55.4 5.0 24 221-244 170-193 (365)
177 2px0_A Flagellar biosynthesis 93.9 0.093 3.2E-06 52.5 7.0 25 220-244 104-128 (296)
178 2wji_A Ferrous iron transport 93.9 0.038 1.3E-06 48.8 3.7 25 219-243 1-25 (165)
179 1v5w_A DMC1, meiotic recombina 93.9 0.026 9E-07 57.3 3.0 26 219-244 120-145 (343)
180 2i3b_A HCR-ntpase, human cance 93.9 0.03 1E-06 52.6 3.1 23 222-244 2-24 (189)
181 2yz2_A Putative ABC transporte 93.8 0.029 1E-06 55.2 3.1 25 219-243 31-55 (266)
182 2olj_A Amino acid ABC transpor 93.8 0.029 1E-06 55.4 3.1 25 219-243 48-72 (263)
183 2onk_A Molybdate/tungstate ABC 93.8 0.033 1.1E-06 54.2 3.4 22 222-243 25-46 (240)
184 2nq2_C Hypothetical ABC transp 93.8 0.03 1E-06 54.8 3.0 25 219-243 29-53 (253)
185 3dm5_A SRP54, signal recogniti 93.8 0.5 1.7E-05 50.5 12.6 26 219-244 98-123 (443)
186 2w0m_A SSO2452; RECA, SSPF, un 93.8 0.039 1.3E-06 50.6 3.6 25 220-244 22-46 (235)
187 2v9p_A Replication protein E1; 93.8 0.034 1.2E-06 56.5 3.5 26 219-244 124-149 (305)
188 3b85_A Phosphate starvation-in 93.8 0.021 7.3E-07 54.4 1.9 25 220-244 21-45 (208)
189 2ihy_A ABC transporter, ATP-bi 93.7 0.031 1.1E-06 55.6 3.1 24 220-243 46-69 (279)
190 2z43_A DNA repair and recombin 93.6 0.031 1.1E-06 56.1 2.9 30 133-162 11-40 (324)
191 1jbk_A CLPB protein; beta barr 93.6 0.051 1.8E-06 47.5 4.0 24 221-244 43-66 (195)
192 1u8z_A RAS-related protein RAL 93.6 0.054 1.8E-06 46.4 4.0 26 219-244 2-27 (168)
193 1c1y_A RAS-related protein RAP 93.5 0.052 1.8E-06 46.8 3.8 25 219-243 1-25 (167)
194 2bbs_A Cystic fibrosis transme 93.4 0.036 1.2E-06 55.5 3.1 25 219-243 62-86 (290)
195 3e70_C DPA, signal recognition 93.4 0.09 3.1E-06 53.6 5.9 26 219-244 127-152 (328)
196 3con_A GTPase NRAS; structural 93.3 0.05 1.7E-06 48.5 3.5 27 218-244 18-44 (190)
197 3foz_A TRNA delta(2)-isopenten 93.2 0.064 2.2E-06 55.1 4.4 27 220-247 9-35 (316)
198 2fn4_A P23, RAS-related protei 93.1 0.071 2.4E-06 46.5 4.1 27 218-244 6-32 (181)
199 2cvh_A DNA repair and recombin 93.1 0.055 1.9E-06 49.5 3.5 25 219-243 18-42 (220)
200 3fvq_A Fe(3+) IONS import ATP- 93.1 0.05 1.7E-06 56.5 3.6 25 219-243 28-52 (359)
201 3bos_A Putative DNA replicatio 93.1 0.064 2.2E-06 49.2 3.9 24 221-244 52-75 (242)
202 1p9r_A General secretion pathw 93.0 0.11 3.8E-06 54.8 6.0 39 220-259 166-205 (418)
203 1n0w_A DNA repair protein RAD5 93.0 0.058 2E-06 50.1 3.5 26 219-244 22-47 (243)
204 2f1r_A Molybdopterin-guanine d 93.0 0.035 1.2E-06 51.4 2.0 23 222-244 3-25 (171)
205 2pjz_A Hypothetical protein ST 92.9 0.047 1.6E-06 53.9 2.9 23 221-243 30-52 (263)
206 3jvv_A Twitching mobility prot 92.9 0.1 3.6E-06 53.7 5.6 25 220-244 122-146 (356)
207 1njg_A DNA polymerase III subu 92.9 0.068 2.3E-06 48.2 3.8 23 222-244 46-68 (250)
208 1z47_A CYSA, putative ABC-tran 92.9 0.058 2E-06 55.9 3.6 24 220-243 40-63 (355)
209 2orw_A Thymidine kinase; TMTK, 92.9 0.078 2.7E-06 49.2 4.2 26 219-244 1-26 (184)
210 1np6_A Molybdopterin-guanine d 92.9 0.072 2.5E-06 49.5 3.9 24 221-244 6-29 (174)
211 2gza_A Type IV secretion syste 92.8 0.048 1.7E-06 55.9 2.9 25 220-244 174-198 (361)
212 2kjq_A DNAA-related protein; s 92.8 0.045 1.5E-06 49.1 2.4 25 220-244 35-59 (149)
213 2yyz_A Sugar ABC transporter, 92.8 0.06 2E-06 55.8 3.6 25 219-243 27-51 (359)
214 2it1_A 362AA long hypothetical 92.7 0.061 2.1E-06 55.8 3.6 25 219-243 27-51 (362)
215 1v43_A Sugar-binding transport 92.7 0.062 2.1E-06 56.0 3.6 25 219-243 35-59 (372)
216 2p65_A Hypothetical protein PF 92.7 0.066 2.2E-06 47.0 3.3 23 222-244 44-66 (187)
217 1g29_1 MALK, maltose transport 92.7 0.063 2.2E-06 55.8 3.6 24 220-243 28-51 (372)
218 1ixz_A ATP-dependent metallopr 92.7 0.066 2.2E-06 50.9 3.5 21 224-244 52-72 (254)
219 1oix_A RAS-related protein RAB 92.7 0.074 2.5E-06 48.3 3.7 25 220-244 28-52 (191)
220 3nh6_A ATP-binding cassette SU 92.6 0.047 1.6E-06 55.3 2.6 25 219-243 78-102 (306)
221 2a9k_A RAS-related protein RAL 92.6 0.079 2.7E-06 46.4 3.7 27 218-244 15-41 (187)
222 3rlf_A Maltose/maltodextrin im 92.6 0.064 2.2E-06 56.1 3.6 25 219-243 27-51 (381)
223 1xjc_A MOBB protein homolog; s 92.6 0.079 2.7E-06 49.4 3.8 23 222-244 5-27 (169)
224 2bov_A RAla, RAS-related prote 92.6 0.087 3E-06 47.3 4.0 27 218-244 11-37 (206)
225 3cr8_A Sulfate adenylyltranfer 92.6 0.054 1.9E-06 59.2 3.1 28 219-247 367-394 (552)
226 1pui_A ENGB, probable GTP-bind 92.6 0.045 1.5E-06 49.8 2.0 25 219-243 24-48 (210)
227 2ewv_A Twitching motility prot 92.5 0.076 2.6E-06 54.8 4.0 26 219-244 134-159 (372)
228 1ek0_A Protein (GTP-binding pr 92.5 0.079 2.7E-06 45.6 3.5 24 220-243 2-25 (170)
229 1jms_A Terminal deoxynucleotid 92.5 0.032 1.1E-06 58.4 1.1 70 134-206 121-193 (381)
230 1cr0_A DNA primase/helicase; R 92.4 0.074 2.5E-06 51.9 3.6 26 219-244 33-58 (296)
231 3d31_A Sulfate/molybdate ABC t 92.4 0.055 1.9E-06 55.8 2.7 25 219-243 24-48 (348)
232 1z00_B DNA repair endonuclease 92.4 0.059 2E-06 45.2 2.5 32 135-167 19-50 (84)
233 3sop_A Neuronal-specific septi 92.4 0.077 2.6E-06 52.4 3.6 23 222-244 3-25 (270)
234 3k53_A Ferrous iron transport 92.4 0.083 2.8E-06 51.2 3.8 25 219-243 1-25 (271)
235 1lv7_A FTSH; alpha/beta domain 92.3 0.077 2.6E-06 50.5 3.5 25 223-248 47-71 (257)
236 1upt_A ARL1, ADP-ribosylation 92.3 0.12 4.1E-06 44.7 4.4 25 219-243 5-29 (171)
237 2x8a_A Nuclear valosin-contain 92.3 0.072 2.5E-06 52.4 3.3 24 224-248 47-70 (274)
238 2gj8_A MNME, tRNA modification 92.3 0.088 3E-06 47.0 3.6 24 220-243 3-26 (172)
239 2f9l_A RAB11B, member RAS onco 92.3 0.091 3.1E-06 47.7 3.8 23 221-243 5-27 (199)
240 1mh1_A RAC1; GTP-binding, GTPa 92.2 0.097 3.3E-06 46.0 3.8 25 219-243 3-27 (186)
241 3tui_C Methionine import ATP-b 92.2 0.078 2.7E-06 55.3 3.6 25 219-243 52-76 (366)
242 2lkc_A Translation initiation 92.2 0.11 3.8E-06 45.3 4.1 25 219-243 6-30 (178)
243 3gd7_A Fusion complex of cysti 92.2 0.078 2.7E-06 55.5 3.6 25 219-243 45-69 (390)
244 3ihw_A Centg3; RAS, centaurin, 92.1 0.11 3.8E-06 46.9 4.1 28 216-243 15-42 (184)
245 2qm8_A GTPase/ATPase; G protei 92.1 0.092 3.2E-06 53.4 4.0 26 219-244 53-78 (337)
246 1z2a_A RAS-related protein RAB 92.1 0.1 3.5E-06 44.9 3.7 24 220-243 4-27 (168)
247 2y8e_A RAB-protein 6, GH09086P 92.1 0.092 3.1E-06 45.7 3.4 26 218-243 11-36 (179)
248 2chg_A Replication factor C sm 92.1 0.092 3.2E-06 46.9 3.5 21 224-244 41-61 (226)
249 3kta_A Chromosome segregation 92.1 0.087 3E-06 47.3 3.3 21 223-243 28-48 (182)
250 1oxx_K GLCV, glucose, ABC tran 92.1 0.052 1.8E-06 56.0 2.1 25 219-243 29-53 (353)
251 2dyk_A GTP-binding protein; GT 92.1 0.11 3.6E-06 44.6 3.7 23 222-244 2-24 (161)
252 2nzj_A GTP-binding protein REM 92.0 0.1 3.5E-06 45.3 3.7 24 220-243 3-26 (175)
253 1wms_A RAB-9, RAB9, RAS-relate 92.0 0.095 3.2E-06 45.8 3.4 25 219-243 5-29 (177)
254 1in4_A RUVB, holliday junction 92.0 0.083 2.8E-06 53.0 3.3 26 222-248 52-77 (334)
255 2w58_A DNAI, primosome compone 91.9 0.11 3.7E-06 47.4 3.8 24 222-245 55-78 (202)
256 2hxs_A RAB-26, RAS-related pro 91.9 0.12 4.1E-06 45.1 4.0 25 219-243 4-28 (178)
257 3t15_A Ribulose bisphosphate c 91.9 0.13 4.4E-06 50.8 4.6 28 221-249 36-63 (293)
258 1nij_A Hypothetical protein YJ 91.8 0.077 2.6E-06 53.2 3.0 24 221-244 4-27 (318)
259 2ged_A SR-beta, signal recogni 91.8 0.12 4E-06 46.2 3.9 26 219-244 46-71 (193)
260 3clv_A RAB5 protein, putative; 91.8 0.15 5.1E-06 45.0 4.5 25 220-244 6-30 (208)
261 2erx_A GTP-binding protein DI- 91.8 0.11 3.7E-06 44.8 3.5 23 221-243 3-25 (172)
262 2ihm_A POL MU, DNA polymerase 91.8 0.04 1.4E-06 57.2 0.8 68 134-205 102-172 (360)
263 2www_A Methylmalonic aciduria 91.8 0.12 4.3E-06 52.6 4.5 25 220-244 73-97 (349)
264 2p5s_A RAS and EF-hand domain 91.7 0.12 4.1E-06 46.8 3.9 25 219-243 26-50 (199)
265 2wsm_A Hydrogenase expression/ 91.7 0.13 4.3E-06 47.3 4.1 25 220-244 29-53 (221)
266 2zej_A Dardarin, leucine-rich 91.7 0.099 3.4E-06 46.9 3.2 22 222-243 3-24 (184)
267 1iy2_A ATP-dependent metallopr 91.6 0.098 3.4E-06 50.7 3.3 21 224-244 76-96 (278)
268 4dsu_A GTPase KRAS, isoform 2B 91.6 0.11 3.9E-06 45.6 3.5 25 220-244 3-27 (189)
269 2j1l_A RHO-related GTP-binding 91.6 0.12 3.9E-06 47.8 3.6 25 219-243 32-56 (214)
270 3i8s_A Ferrous iron transport 91.5 0.11 3.9E-06 50.8 3.7 25 219-243 1-25 (274)
271 2qz4_A Paraplegin; AAA+, SPG7, 91.5 0.11 3.7E-06 49.0 3.5 27 222-249 40-66 (262)
272 2npi_A Protein CLP1; CLP1-PCF1 91.5 0.085 2.9E-06 56.3 3.0 25 220-244 137-161 (460)
273 3eph_A TRNA isopentenyltransfe 91.5 0.12 4.1E-06 54.7 4.1 25 222-247 3-27 (409)
274 1ky3_A GTP-binding protein YPT 91.4 0.13 4.5E-06 44.8 3.7 26 219-244 6-31 (182)
275 2yv5_A YJEQ protein; hydrolase 91.4 0.11 3.9E-06 51.8 3.6 24 220-244 164-187 (302)
276 3kkq_A RAS-related protein M-R 91.4 0.16 5.4E-06 44.8 4.1 26 218-243 15-40 (183)
277 2gf0_A GTP-binding protein DI- 91.4 0.16 5.4E-06 45.3 4.2 25 219-243 6-30 (199)
278 2pt7_A CAG-ALFA; ATPase, prote 91.3 0.075 2.6E-06 54.0 2.3 24 221-244 171-194 (330)
279 3h4m_A Proteasome-activating n 91.3 0.11 3.9E-06 49.8 3.4 25 223-248 53-77 (285)
280 3t5g_A GTP-binding protein RHE 91.3 0.12 4E-06 45.6 3.2 25 219-243 4-28 (181)
281 3q72_A GTP-binding protein RAD 91.3 0.13 4.3E-06 44.4 3.4 22 222-243 3-24 (166)
282 1moz_A ARL1, ADP-ribosylation 91.2 0.11 3.8E-06 45.7 2.9 25 219-243 16-40 (183)
283 1z06_A RAS-related protein RAB 91.2 0.14 4.8E-06 45.7 3.7 26 218-243 17-42 (189)
284 1r2q_A RAS-related protein RAB 91.1 0.12 4E-06 44.5 3.0 25 219-243 4-28 (170)
285 2a1j_A DNA repair endonuclease 91.1 0.084 2.9E-06 41.6 1.9 29 136-165 6-34 (63)
286 1nlf_A Regulatory protein REPA 91.1 0.12 4.3E-06 50.1 3.5 26 219-244 28-53 (279)
287 1z0j_A RAB-22, RAS-related pro 91.1 0.12 4E-06 44.6 2.9 25 220-244 5-29 (170)
288 3pqc_A Probable GTP-binding pr 91.1 0.17 5.7E-06 44.8 4.0 25 219-243 21-45 (195)
289 3b9p_A CG5977-PA, isoform A; A 91.1 0.14 4.8E-06 49.6 3.8 26 221-247 54-79 (297)
290 2qmh_A HPR kinase/phosphorylas 91.0 0.1 3.5E-06 50.6 2.8 26 219-244 32-57 (205)
291 1svi_A GTP-binding protein YSX 91.0 0.15 5.1E-06 45.4 3.7 25 219-243 21-45 (195)
292 1fzq_A ADP-ribosylation factor 91.0 0.16 5.5E-06 45.5 3.9 25 219-243 14-38 (181)
293 3n70_A Transport activator; si 90.9 0.14 4.8E-06 45.0 3.3 22 223-244 26-47 (145)
294 2hf9_A Probable hydrogenase ni 90.9 0.16 5.6E-06 46.8 3.9 25 220-244 37-61 (226)
295 1g16_A RAS-related protein SEC 90.9 0.16 5.5E-06 43.7 3.6 23 221-243 3-25 (170)
296 2efe_B Small GTP-binding prote 90.9 0.15 5E-06 44.7 3.5 25 219-243 10-34 (181)
297 3oes_A GTPase rhebl1; small GT 90.9 0.15 5.2E-06 46.2 3.6 26 219-244 22-47 (201)
298 4fcw_A Chaperone protein CLPB; 90.8 0.2 6.9E-06 48.5 4.7 25 221-245 47-71 (311)
299 3cf0_A Transitional endoplasmi 90.8 0.15 5.1E-06 50.3 3.8 26 221-247 49-74 (301)
300 3bc1_A RAS-related protein RAB 90.8 0.17 6E-06 44.4 3.9 24 220-243 10-33 (195)
301 1z08_A RAS-related protein RAB 90.8 0.17 5.9E-06 43.7 3.7 24 220-243 5-28 (170)
302 2oil_A CATX-8, RAS-related pro 90.7 0.18 6E-06 45.1 3.9 26 219-244 23-48 (193)
303 3syl_A Protein CBBX; photosynt 90.7 0.19 6.5E-06 48.7 4.4 24 221-244 67-90 (309)
304 4bas_A ADP-ribosylation factor 90.7 0.15 5E-06 45.5 3.3 26 218-243 14-39 (199)
305 1nrj_B SR-beta, signal recogni 90.7 0.18 6.1E-06 46.1 4.0 26 219-244 10-35 (218)
306 2xxa_A Signal recognition part 90.6 0.94 3.2E-05 47.9 9.9 26 219-244 98-123 (433)
307 1tq4_A IIGP1, interferon-induc 90.6 0.15 5E-06 53.9 3.7 24 220-243 68-91 (413)
308 2fg5_A RAB-22B, RAS-related pr 90.6 0.15 5.3E-06 45.8 3.4 26 219-244 21-46 (192)
309 3q85_A GTP-binding protein REM 90.6 0.16 5.5E-06 43.9 3.4 22 222-243 3-24 (169)
310 2iwr_A Centaurin gamma 1; ANK 90.6 0.15 5.2E-06 44.7 3.3 25 219-243 5-29 (178)
311 2atv_A RERG, RAS-like estrogen 90.6 0.19 6.4E-06 45.3 4.0 26 219-244 26-51 (196)
312 2g6b_A RAS-related protein RAB 90.6 0.19 6.4E-06 43.9 3.9 26 219-244 8-33 (180)
313 2dr3_A UPF0273 protein PH0284; 90.6 0.16 5.4E-06 47.2 3.5 25 220-244 22-46 (247)
314 2h17_A ADP-ribosylation factor 90.5 0.15 5.3E-06 45.3 3.2 26 218-243 18-43 (181)
315 1zj6_A ADP-ribosylation factor 90.5 0.19 6.6E-06 44.7 3.9 25 219-243 14-38 (187)
316 3bwd_D RAC-like GTP-binding pr 90.5 0.19 6.5E-06 44.0 3.8 25 219-243 6-30 (182)
317 3p32_A Probable GTPase RV1496/ 90.5 0.32 1.1E-05 49.4 5.9 26 219-244 77-102 (355)
318 3ozx_A RNAse L inhibitor; ATP 90.5 0.16 5.3E-06 55.3 3.9 26 218-243 22-47 (538)
319 3tw8_B RAS-related protein RAB 90.4 0.17 5.8E-06 44.1 3.4 24 220-243 8-31 (181)
320 1ksh_A ARF-like protein 2; sma 90.4 0.18 6.2E-06 44.6 3.6 25 219-243 16-40 (186)
321 2rcn_A Probable GTPase ENGC; Y 90.4 0.15 5.2E-06 52.9 3.5 24 220-243 214-237 (358)
322 2hup_A RAS-related protein RAB 90.3 0.17 6E-06 46.1 3.5 25 219-243 27-51 (201)
323 1m7b_A RND3/RHOE small GTP-bin 90.3 0.19 6.4E-06 44.8 3.6 26 219-244 5-30 (184)
324 1u0l_A Probable GTPase ENGC; p 90.3 0.16 5.4E-06 50.6 3.4 24 220-243 168-191 (301)
325 1z0f_A RAB14, member RAS oncog 90.2 0.2 7E-06 43.4 3.8 25 220-244 14-38 (179)
326 1zd9_A ADP-ribosylation factor 90.2 0.18 6.1E-06 45.2 3.5 25 219-243 20-44 (188)
327 3b5x_A Lipid A export ATP-bind 90.2 0.15 5.2E-06 55.3 3.5 25 219-243 367-391 (582)
328 3reg_A RHO-like small GTPase; 90.2 0.18 6.2E-06 45.2 3.5 26 219-244 21-46 (194)
329 1vg8_A RAS-related protein RAB 90.1 0.2 6.7E-06 45.1 3.7 26 219-244 6-31 (207)
330 3b60_A Lipid A export ATP-bind 90.1 0.16 5.3E-06 55.2 3.5 25 219-243 367-391 (582)
331 2gco_A H9, RHO-related GTP-bin 90.1 0.19 6.4E-06 45.7 3.5 26 219-244 23-48 (201)
332 2b6h_A ADP-ribosylation factor 90.1 0.21 7.2E-06 45.2 3.9 25 219-243 27-51 (192)
333 1ofh_A ATP-dependent HSL prote 90.1 0.17 6E-06 48.5 3.5 25 223-248 52-76 (310)
334 1m2o_B GTP-binding protein SAR 90.1 0.19 6.5E-06 45.5 3.5 25 219-243 21-45 (190)
335 1yqt_A RNAse L inhibitor; ATP- 90.1 0.16 5.5E-06 55.0 3.5 25 219-243 45-69 (538)
336 2h57_A ADP-ribosylation factor 90.0 0.16 5.4E-06 45.5 2.9 25 219-243 19-43 (190)
337 3c5c_A RAS-like protein 12; GD 90.0 0.2 6.9E-06 45.0 3.7 25 219-243 19-43 (187)
338 2oap_1 GSPE-2, type II secreti 90.0 0.13 4.5E-06 55.5 2.8 24 221-244 260-283 (511)
339 2fv8_A H6, RHO-related GTP-bin 90.0 0.18 6.2E-06 46.0 3.3 26 219-244 23-48 (207)
340 2xtp_A GTPase IMAP family memb 90.0 0.19 6.4E-06 47.9 3.6 25 219-243 20-44 (260)
341 2bme_A RAB4A, RAS-related prot 90.0 0.23 8E-06 43.7 4.0 25 220-244 9-33 (186)
342 2ga8_A Hypothetical 39.9 kDa p 90.0 0.23 7.8E-06 51.8 4.4 28 220-248 23-50 (359)
343 3t1o_A Gliding protein MGLA; G 89.9 0.19 6.5E-06 44.4 3.3 26 219-244 12-37 (198)
344 1x3s_A RAS-related protein RAB 89.9 0.17 5.7E-06 44.9 3.0 26 219-244 13-38 (195)
345 2a5j_A RAS-related protein RAB 89.9 0.25 8.6E-06 44.3 4.2 25 219-243 19-43 (191)
346 4gzl_A RAS-related C3 botulinu 89.9 0.22 7.4E-06 45.6 3.8 26 218-243 27-52 (204)
347 1yqt_A RNAse L inhibitor; ATP- 89.9 0.17 5.9E-06 54.8 3.6 24 220-243 311-334 (538)
348 2r6f_A Excinuclease ABC subuni 89.8 0.053 1.8E-06 63.1 -0.5 46 187-238 16-61 (972)
349 1d2n_A N-ethylmaleimide-sensit 89.8 0.23 7.7E-06 47.8 4.0 29 220-249 63-91 (272)
350 3tkl_A RAS-related protein RAB 89.8 0.24 8.1E-06 44.0 3.9 24 220-243 15-38 (196)
351 1r8s_A ADP-ribosylation factor 89.8 0.22 7.6E-06 42.8 3.6 22 223-244 2-23 (164)
352 3q3j_B RHO-related GTP-binding 89.8 0.23 7.8E-06 46.0 3.9 27 218-244 24-50 (214)
353 1xx6_A Thymidine kinase; NESG, 89.7 0.5 1.7E-05 44.5 6.2 29 218-246 5-33 (191)
354 2qby_A CDC6 homolog 1, cell di 89.7 0.19 6.6E-06 49.4 3.5 24 221-244 45-68 (386)
355 2cxx_A Probable GTP-binding pr 89.6 0.2 6.8E-06 44.2 3.3 21 223-243 3-23 (190)
356 1l8q_A Chromosomal replication 89.6 0.19 6.6E-06 49.5 3.4 23 222-244 38-60 (324)
357 1sxj_D Activator 1 41 kDa subu 89.6 0.2 6.8E-06 49.2 3.5 21 224-244 61-81 (353)
358 3cbq_A GTP-binding protein REM 89.6 0.17 5.9E-06 46.1 2.8 24 219-242 21-44 (195)
359 1f6b_A SAR1; gtpases, N-termin 89.5 0.2 7E-06 45.6 3.3 25 219-243 23-47 (198)
360 2fh5_B SR-beta, signal recogni 89.5 0.23 7.8E-06 45.3 3.6 26 219-244 5-30 (214)
361 4b4t_L 26S protease subunit RP 89.4 0.23 8E-06 52.8 4.1 26 223-249 217-242 (437)
362 2b8t_A Thymidine kinase; deoxy 89.4 0.41 1.4E-05 46.3 5.5 30 218-247 9-38 (223)
363 4b4t_K 26S protease regulatory 89.3 0.24 8.2E-06 52.6 4.1 26 223-249 208-233 (428)
364 3bk7_A ABC transporter ATP-bin 89.3 0.2 6.8E-06 55.2 3.6 24 220-243 381-404 (607)
365 3ozx_A RNAse L inhibitor; ATP 89.2 0.18 6.1E-06 54.8 3.1 24 220-243 293-316 (538)
366 2gf9_A RAS-related protein RAB 89.2 0.3 1E-05 43.5 4.1 25 220-244 21-45 (189)
367 3dz8_A RAS-related protein RAB 89.1 0.26 9E-06 44.1 3.7 25 220-244 22-46 (191)
368 2r62_A Cell division protease 89.1 0.12 4.1E-06 49.3 1.4 24 224-248 47-70 (268)
369 3uk6_A RUVB-like 2; hexameric 89.0 0.25 8.5E-06 49.1 3.8 27 221-248 70-96 (368)
370 3j16_B RLI1P; ribosome recycli 89.0 0.22 7.5E-06 55.0 3.7 25 219-243 101-125 (608)
371 1sxj_E Activator 1 40 kDa subu 89.0 0.19 6.4E-06 49.8 2.8 21 224-244 39-59 (354)
372 2qag_B Septin-6, protein NEDD5 89.0 0.19 6.4E-06 53.5 3.0 24 220-243 39-64 (427)
373 2il1_A RAB12; G-protein, GDP, 88.9 0.25 8.4E-06 44.6 3.4 25 219-243 24-48 (192)
374 1uf9_A TT1252 protein; P-loop, 88.9 0.5 1.7E-05 42.6 5.4 23 356-378 124-146 (203)
375 2q3h_A RAS homolog gene family 88.9 0.28 9.5E-06 44.1 3.7 25 219-243 18-42 (201)
376 2p67_A LAO/AO transport system 88.9 0.26 8.9E-06 49.9 3.9 26 219-244 54-79 (341)
377 2qu8_A Putative nucleolar GTP- 88.9 0.29 1E-05 45.5 3.9 25 219-243 27-51 (228)
378 3hws_A ATP-dependent CLP prote 88.8 0.24 8.1E-06 50.0 3.5 28 221-249 51-78 (363)
379 2x77_A ADP-ribosylation factor 88.8 0.21 7.3E-06 44.4 2.8 24 219-242 20-43 (189)
380 1fnn_A CDC6P, cell division co 88.8 0.27 9.2E-06 48.7 3.8 22 223-244 46-67 (389)
381 3cph_A RAS-related protein SEC 88.8 0.3 1E-05 44.1 3.9 25 219-243 18-42 (213)
382 2obl_A ESCN; ATPase, hydrolase 88.8 0.25 8.7E-06 50.6 3.7 26 219-244 69-94 (347)
383 1yrb_A ATP(GTP)binding protein 88.8 0.38 1.3E-05 45.4 4.7 27 218-244 11-37 (262)
384 1j8m_F SRP54, signal recogniti 88.8 1.1 3.7E-05 44.9 8.2 25 220-244 97-121 (297)
385 4dhe_A Probable GTP-binding pr 88.7 0.18 6.1E-06 46.2 2.3 24 220-243 28-51 (223)
386 2yl4_A ATP-binding cassette SU 88.7 0.16 5.6E-06 55.2 2.4 25 219-243 368-392 (595)
387 1t9h_A YLOQ, probable GTPase E 88.7 0.11 3.8E-06 52.7 1.0 24 220-243 172-195 (307)
388 3a1s_A Iron(II) transport prot 88.6 0.24 8.2E-06 48.2 3.3 25 219-243 3-27 (258)
389 1f2t_A RAD50 ABC-ATPase; DNA d 88.6 0.28 9.4E-06 43.9 3.4 23 221-243 23-45 (149)
390 2r2a_A Uncharacterized protein 88.6 0.26 8.7E-06 46.7 3.3 24 220-243 4-27 (199)
391 1um8_A ATP-dependent CLP prote 88.5 0.25 8.6E-06 49.9 3.5 25 223-248 74-98 (376)
392 2j37_W Signal recognition part 88.5 0.94 3.2E-05 49.0 8.1 26 219-244 99-124 (504)
393 3llu_A RAS-related GTP-binding 88.5 0.27 9.2E-06 44.5 3.3 26 218-243 17-42 (196)
394 1sxj_C Activator 1 40 kDa subu 88.5 0.26 8.8E-06 49.1 3.4 21 224-244 49-69 (340)
395 3m6a_A ATP-dependent protease 88.4 0.27 9.2E-06 53.2 3.8 27 220-247 107-133 (543)
396 2j0v_A RAC-like GTP-binding pr 88.4 0.35 1.2E-05 43.9 4.0 25 219-243 7-31 (212)
397 3euj_A Chromosome partition pr 88.3 0.25 8.4E-06 53.3 3.4 23 222-244 30-52 (483)
398 1xwi_A SKD1 protein; VPS4B, AA 88.3 0.27 9.2E-06 49.3 3.4 23 222-244 46-68 (322)
399 3iev_A GTP-binding protein ERA 88.2 0.26 8.9E-06 49.1 3.3 26 218-243 7-32 (308)
400 1ls1_A Signal recognition part 88.2 0.31 1.1E-05 48.6 3.8 25 220-244 97-121 (295)
401 4a82_A Cystic fibrosis transme 88.2 0.17 5.7E-06 55.0 2.0 25 219-243 365-389 (578)
402 1gwn_A RHO-related GTP-binding 88.2 0.32 1.1E-05 44.9 3.6 26 219-244 26-51 (205)
403 3eie_A Vacuolar protein sortin 88.2 0.28 9.4E-06 48.8 3.4 27 222-249 52-78 (322)
404 1ega_A Protein (GTP-binding pr 88.1 0.25 8.5E-06 49.1 3.1 25 219-243 6-30 (301)
405 1iqp_A RFCS; clamp loader, ext 88.1 0.29 1E-05 47.2 3.5 22 223-244 48-69 (327)
406 3j16_B RLI1P; ribosome recycli 88.0 0.27 9.4E-06 54.2 3.6 22 222-243 379-400 (608)
407 3bk7_A ABC transporter ATP-bin 88.0 0.23 7.9E-06 54.7 3.0 25 219-243 115-139 (607)
408 3qf4_B Uncharacterized ABC tra 88.0 0.2 6.9E-06 54.6 2.5 25 219-243 379-403 (598)
409 2dpy_A FLII, flagellum-specifi 88.0 0.3 1E-05 51.7 3.7 26 219-244 155-180 (438)
410 3bqs_A Uncharacterized protein 88.0 0.26 8.8E-06 42.1 2.6 31 134-164 4-34 (93)
411 4b4t_M 26S protease regulatory 87.9 0.32 1.1E-05 51.7 3.9 27 222-249 216-242 (434)
412 2qby_B CDC6 homolog 3, cell di 87.9 0.36 1.2E-05 48.0 4.0 24 221-244 45-68 (384)
413 2bcg_Y Protein YP2, GTP-bindin 87.8 0.36 1.2E-05 43.7 3.7 24 220-243 7-30 (206)
414 1ci4_A Protein (barrier-TO-aut 87.8 0.3 1E-05 41.6 2.9 58 131-192 15-75 (89)
415 3pfi_A Holliday junction ATP-d 87.8 0.31 1E-05 48.1 3.5 25 223-248 57-81 (338)
416 2bjv_A PSP operon transcriptio 87.8 0.3 1E-05 46.6 3.3 22 223-244 31-52 (265)
417 1zbd_A Rabphilin-3A; G protein 87.8 0.35 1.2E-05 43.5 3.6 23 221-243 8-30 (203)
418 3qf4_A ABC transporter, ATP-bi 87.7 0.22 7.5E-06 54.3 2.5 24 220-243 368-391 (587)
419 4b4t_J 26S protease regulatory 87.6 0.34 1.2E-05 51.2 3.9 25 224-249 185-209 (405)
420 2v1u_A Cell division control p 87.6 0.29 9.8E-06 48.3 3.1 24 221-244 44-67 (387)
421 2o52_A RAS-related protein RAB 87.5 0.31 1.1E-05 44.3 3.1 25 219-243 23-47 (200)
422 3def_A T7I23.11 protein; chlor 87.5 0.34 1.2E-05 46.7 3.6 25 219-243 34-58 (262)
423 3ch4_B Pmkase, phosphomevalona 87.5 0.4 1.4E-05 46.1 3.9 28 220-248 10-37 (202)
424 2ew1_A RAS-related protein RAB 87.4 0.38 1.3E-05 44.3 3.7 24 220-243 25-48 (201)
425 3b1v_A Ferrous iron uptake tra 87.3 0.36 1.2E-05 47.5 3.7 23 221-243 3-25 (272)
426 1sxj_A Activator 1 95 kDa subu 87.3 0.75 2.6E-05 49.1 6.4 27 221-248 77-103 (516)
427 1tf7_A KAIC; homohexamer, hexa 87.2 0.32 1.1E-05 52.0 3.5 23 219-241 37-59 (525)
428 2atx_A Small GTP binding prote 87.1 0.42 1.4E-05 42.7 3.7 25 220-244 17-41 (194)
429 2f7s_A C25KG, RAS-related prot 87.1 0.39 1.4E-05 43.7 3.6 24 220-243 24-47 (217)
430 3iby_A Ferrous iron transport 87.1 0.33 1.1E-05 47.2 3.2 21 223-243 3-23 (256)
431 3mab_A Uncharacterized protein 87.0 0.29 1E-05 41.8 2.4 31 134-164 4-34 (93)
432 1jr3_A DNA polymerase III subu 86.9 0.4 1.4E-05 47.4 3.7 22 223-244 40-61 (373)
433 3gj0_A GTP-binding nuclear pro 86.8 0.29 1E-05 45.0 2.5 26 218-243 12-38 (221)
434 3lxw_A GTPase IMAP family memb 86.8 0.37 1.3E-05 46.3 3.3 25 219-243 19-43 (247)
435 1c9k_A COBU, adenosylcobinamid 86.8 0.31 1.1E-05 45.9 2.8 20 224-243 2-21 (180)
436 3qf7_A RAD50; ABC-ATPase, ATPa 86.8 0.36 1.2E-05 49.5 3.4 22 223-244 25-46 (365)
437 2fna_A Conserved hypothetical 86.8 0.41 1.4E-05 46.4 3.7 22 223-244 32-53 (357)
438 2qp9_X Vacuolar protein sortin 86.8 0.37 1.3E-05 48.9 3.5 25 223-248 86-110 (355)
439 2cjw_A GTP-binding protein GEM 86.8 0.47 1.6E-05 43.1 3.8 24 220-243 5-28 (192)
440 3d8b_A Fidgetin-like protein 1 86.7 0.38 1.3E-05 48.8 3.5 27 221-248 117-143 (357)
441 2j9r_A Thymidine kinase; TK1, 86.7 1.2 4.1E-05 43.2 6.8 31 218-248 25-55 (214)
442 2qen_A Walker-type ATPase; unk 86.7 0.42 1.5E-05 46.3 3.7 23 222-244 32-54 (350)
443 1g41_A Heat shock protein HSLU 86.6 0.41 1.4E-05 51.1 3.8 26 223-249 52-77 (444)
444 4aby_A DNA repair protein RECN 86.5 0.17 5.8E-06 51.6 0.8 24 219-243 59-82 (415)
445 2qnr_A Septin-2, protein NEDD5 86.4 0.38 1.3E-05 48.0 3.2 23 221-243 18-40 (301)
446 2r44_A Uncharacterized protein 86.4 0.3 1E-05 48.2 2.5 25 223-248 48-72 (331)
447 1ni3_A YCHF GTPase, YCHF GTP-b 86.4 0.42 1.4E-05 50.1 3.7 25 219-243 18-42 (392)
448 2aka_B Dynamin-1; fusion prote 86.3 0.71 2.4E-05 44.4 5.0 25 219-243 24-48 (299)
449 2c9o_A RUVB-like 1; hexameric 86.3 0.41 1.4E-05 50.2 3.6 24 223-247 65-88 (456)
450 1jwy_B Dynamin A GTPase domain 86.3 0.42 1.5E-05 46.6 3.5 26 219-244 22-47 (315)
451 1tue_A Replication protein E1; 86.3 0.35 1.2E-05 47.0 2.9 22 223-244 60-81 (212)
452 2chq_A Replication factor C sm 86.2 0.43 1.5E-05 45.9 3.4 21 224-244 41-61 (319)
453 4djt_A GTP-binding nuclear pro 86.1 0.2 6.8E-06 45.8 1.0 25 219-243 9-33 (218)
454 3llm_A ATP-dependent RNA helic 86.1 1.3 4.5E-05 41.6 6.8 22 221-242 76-97 (235)
455 2zts_A Putative uncharacterize 86.0 0.49 1.7E-05 43.8 3.6 25 219-243 28-52 (251)
456 2fu5_C RAS-related protein RAB 86.0 0.29 1E-05 43.1 2.0 24 220-243 7-30 (183)
457 2vf7_A UVRA2, excinuclease ABC 85.9 0.16 5.6E-06 58.2 0.3 36 199-238 18-53 (842)
458 2iw3_A Elongation factor 3A; a 85.9 0.41 1.4E-05 55.9 3.6 24 220-243 460-483 (986)
459 1sxj_B Activator 1 37 kDa subu 85.9 0.47 1.6E-05 45.7 3.5 21 224-244 45-65 (323)
460 3co5_A Putative two-component 85.7 0.24 8.3E-06 43.4 1.3 21 224-244 30-50 (143)
461 2vhj_A Ntpase P4, P4; non- hyd 85.7 0.81 2.8E-05 47.2 5.3 32 220-252 122-153 (331)
462 4b4t_I 26S protease regulatory 85.7 0.51 1.7E-05 50.4 4.0 27 222-249 217-243 (437)
463 1hqc_A RUVB; extended AAA-ATPa 85.7 0.31 1E-05 47.5 2.1 25 223-248 40-64 (324)
464 4b4t_H 26S protease regulatory 85.6 0.44 1.5E-05 51.3 3.5 26 223-249 245-270 (467)
465 2ffh_A Protein (FFH); SRP54, s 85.5 1.6 5.6E-05 46.1 7.7 25 220-244 97-121 (425)
466 3qks_A DNA double-strand break 85.4 0.5 1.7E-05 44.2 3.4 24 221-244 23-46 (203)
467 1g8p_A Magnesium-chelatase 38 85.4 0.27 9.3E-06 48.3 1.6 21 224-244 48-68 (350)
468 2z4s_A Chromosomal replication 85.4 0.46 1.6E-05 49.9 3.4 24 221-244 130-153 (440)
469 3pvs_A Replication-associated 85.4 0.47 1.6E-05 50.2 3.5 25 222-247 51-75 (447)
470 3t5d_A Septin-7; GTP-binding p 85.3 0.48 1.6E-05 45.9 3.3 22 221-242 8-29 (274)
471 2v3c_C SRP54, signal recogniti 85.2 0.65 2.2E-05 49.1 4.5 26 219-244 97-122 (432)
472 1h65_A Chloroplast outer envel 85.1 0.52 1.8E-05 45.5 3.5 25 219-243 37-61 (270)
473 3cpj_B GTP-binding protein YPT 85.0 0.61 2.1E-05 43.1 3.7 24 220-243 12-35 (223)
474 3te6_A Regulatory protein SIR3 85.0 0.6 2E-05 47.6 3.9 41 191-244 28-68 (318)
475 3ux8_A Excinuclease ABC, A sub 84.7 0.31 1.1E-05 53.8 1.8 22 220-241 347-368 (670)
476 2qgz_A Helicase loader, putati 84.6 0.65 2.2E-05 46.4 4.0 25 221-245 152-176 (308)
477 1tf7_A KAIC; homohexamer, hexa 84.5 0.55 1.9E-05 50.2 3.6 25 220-244 280-304 (525)
478 1wb9_A DNA mismatch repair pro 84.5 0.53 1.8E-05 53.6 3.7 26 219-244 605-630 (800)
479 3pih_A Uvrabc system protein A 84.5 0.25 8.6E-06 57.2 1.0 36 199-238 6-41 (916)
480 2yc2_C IFT27, small RAB-relate 84.3 0.23 7.9E-06 44.4 0.5 24 220-243 19-42 (208)
481 1wf3_A GTP-binding protein; GT 84.3 0.53 1.8E-05 47.0 3.1 25 219-243 5-29 (301)
482 3vfd_A Spastin; ATPase, microt 84.2 0.59 2E-05 47.7 3.5 27 221-248 148-174 (389)
483 3cf2_A TER ATPase, transitiona 84.1 0.45 1.6E-05 54.3 2.9 28 221-249 238-265 (806)
484 3hr8_A Protein RECA; alpha and 84.1 0.71 2.4E-05 47.7 4.1 26 219-244 59-84 (356)
485 4f4c_A Multidrug resistance pr 84.0 0.52 1.8E-05 56.3 3.5 24 220-243 443-466 (1321)
486 2zan_A Vacuolar protein sortin 84.0 0.59 2E-05 49.0 3.5 23 222-244 168-190 (444)
487 1qhl_A Protein (cell division 83.9 0.1 3.5E-06 50.6 -2.2 22 223-244 29-50 (227)
488 1w5s_A Origin recognition comp 83.8 0.61 2.1E-05 46.6 3.4 22 223-244 52-75 (412)
489 4dkx_A RAS-related protein RAB 83.8 0.76 2.6E-05 43.5 3.9 26 218-243 10-35 (216)
490 2qag_C Septin-7; cell cycle, c 83.7 0.52 1.8E-05 49.7 3.0 22 222-243 32-53 (418)
491 3szr_A Interferon-induced GTP- 83.5 0.41 1.4E-05 52.5 2.1 21 223-243 47-67 (608)
492 3tqf_A HPR(Ser) kinase; transf 83.5 0.81 2.8E-05 43.5 3.9 25 220-244 15-39 (181)
493 2e87_A Hypothetical protein PH 83.4 0.67 2.3E-05 46.9 3.5 25 219-243 165-189 (357)
494 2dhr_A FTSH; AAA+ protein, hex 83.4 0.62 2.1E-05 50.2 3.4 23 224-247 67-89 (499)
495 1ewq_A DNA mismatch repair pro 83.4 0.6 2.1E-05 53.0 3.5 24 221-244 576-599 (765)
496 2zr9_A Protein RECA, recombina 83.4 0.66 2.3E-05 47.5 3.5 25 220-244 60-84 (349)
497 4dcu_A GTP-binding protein ENG 83.4 0.61 2.1E-05 48.9 3.3 26 218-243 20-45 (456)
498 3th5_A RAS-related C3 botulinu 83.9 0.23 7.8E-06 45.0 0.0 25 219-243 28-52 (204)
499 2g3y_A GTP-binding protein GEM 83.1 0.79 2.7E-05 43.1 3.7 24 220-243 36-59 (211)
500 4ag6_A VIRB4 ATPase, type IV s 83.0 1 3.5E-05 45.8 4.7 27 220-246 34-60 (392)
No 1
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.97 E-value=1.2e-29 Score=244.30 Aligned_cols=224 Identities=35% Similarity=0.689 Sum_probs=179.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCC----------CCccchhHhhhcCCCCCcHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVG----------PDHFNILGAYYDAPERYAYTFQN 289 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~----------~~g~~lLe~FY~Dp~r~Sf~~Ql 289 (539)
++++|+|||++||||||+++.|+++ +.. ..++.||+++|.++. ..++++++.+|.++.+|+|.+|+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~-l~~---~~~~~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKT-YPE---WHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPARWSYTFQT 76 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH-CTT---SEEECCCGGGTSCCC------------CCCHHHHHHHSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-cCC---CeeeecchhhhccccccccccccccccCCchHHHHHhCcccchhHHHH
Confidence 5789999999999999999999996 431 347899999996542 13467999999999889999999
Q ss_pred HHHHHHHHHHHHhc-----CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCC-CCCCcEEEEE
Q 009257 290 YVFVTRVMQERESS-----GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYL 363 (539)
Q Consensus 290 ~FLadR~kq~~e~~-----~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp-~l~PDLIIYL 363 (539)
+++..|++++.... ....+.++.||+|++|+|+|+...|+.+.+++.++..|.+|+.++...++ ...||++|||
T Consensus 77 ~~ll~r~~~~~~~~~~~~~~~~~~~l~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~~i~l 156 (241)
T 2ocp_A 77 FSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYL 156 (241)
T ss_dssp HHHHHHHHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhcccCCceEeeeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 99999988754321 12346778999999999999999999888888899999999988765442 1269999999
Q ss_pred eCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecCCCCcccCCCCCcccccceeeecCccccc
Q 009257 364 RASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHS 443 (539)
Q Consensus 364 daspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~~~~~~d~~~~pe~~d~V~~~~~~h~~~ 443 (539)
++|++++++|+.+|+|..|...+.+|+++|++.|+.|+.+... ++.++
T Consensus 157 ~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~-----------p~~~~--------------------- 204 (241)
T 2ocp_A 157 QASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTT-----------KLHFE--------------------- 204 (241)
T ss_dssp ECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCS-----------CCCCT---------------------
T ss_pred ECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccc-----------ccccc---------------------
Confidence 9999999999999999877666799999999999999865320 10000
Q ss_pred cccCCceEEEcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q 009257 444 SIQKVPALVLDCEPNIDFSRDIDLKRQYARQVAEFFEF 481 (539)
Q Consensus 444 ~~~~iPvLviD~d~~~DF~~d~~~~e~i~~~I~~fl~~ 481 (539)
.....++++||++. |+....++.+.+++.|.++++.
T Consensus 205 ~~~~~~~~~Id~~~--~~~~v~~~i~~i~~~i~~~l~~ 240 (241)
T 2ocp_A 205 ALMNIPVLVLDVND--DFSEEVTKQEDLMREVNTFVKN 240 (241)
T ss_dssp TGGGCCEEEEECCS--CTTTCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCC--ChhhCHHHHHHHHHHHHHHHhc
Confidence 01246899999973 7888899999999999988753
No 2
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.95 E-value=2.2e-27 Score=231.66 Aligned_cols=181 Identities=40% Similarity=0.744 Sum_probs=146.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCC-------------CCccchhHhhhcCCCCCcH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVG-------------PDHFNILGAYYDAPERYAY 285 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~-------------~~g~~lLe~FY~Dp~r~Sf 285 (539)
.++++|+|||++||||||+++.|+++ +.. +.++.||++.|.++. +.++++++.||.++.+|++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~-l~~---~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~ 97 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL-CED---WEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSF 97 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG-CTT---EEEECCCHHHHTSCCCC------------CCCCHHHHHHHCHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh-cCC---CEEEecchhhhhccccccccccccccccccCCchHHHHHhCchhcch
Confidence 46789999999999999999999986 421 568899999997542 2356789999998888999
Q ss_pred HHHHHHHHHHHHHHHH-----hcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCC-CCCCcE
Q 009257 286 TFQNYVFVTRVMQERE-----SSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDG 359 (539)
Q Consensus 286 ~~Ql~FLadR~kq~~e-----~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp-~l~PDL 359 (539)
.+|++++.+|++++.+ ......+.+..+++|++|+|+|+...|+.+.++..++..|.+|+..+...++ +..||+
T Consensus 98 ~~~~~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~ 177 (263)
T 1p5z_B 98 TFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDG 177 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhccCCCCe
Confidence 9999887777765432 1112235677899999999999999998888888888889988887754321 136999
Q ss_pred EEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhcc
Q 009257 360 FIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 360 IIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~ 403 (539)
+|||+++++++++|+.+|+|+.|...+.+|+++|++.|+.|+.+
T Consensus 178 vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~ 221 (263)
T 1p5z_B 178 IIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLH 221 (263)
T ss_dssp EEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999877767899999999999999864
No 3
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.95 E-value=6.8e-28 Score=248.44 Aligned_cols=176 Identities=13% Similarity=0.137 Sum_probs=137.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCC-------------CcH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPER-------------YAY 285 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r-------------~Sf 285 (539)
+++++|+|||+|||||||++++|+++ ++....+.+++||++.|... .+++.++.+|.|+.+ |.+
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~-L~~~~~v~~trEPg~~w~~~--~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~ 81 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASA-ASGGSPTLYFPEPMAYWRTL--FETDVISGIYDTQNRKQQGNLAVDDAALITA 81 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSG-GGCSSCEEEECCCHHHHHTS--SSSCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-hccCCcEEEEeCCCCccccc--cchHHHHHHHHhhhhccccccCHHHHHHHHH
Confidence 56899999999999999999999996 66543367899999888764 345788899865432 346
Q ss_pred HHHHHHH---HHHHHHHHHhc------C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCC
Q 009257 286 TFQNYVF---VTRVMQERESS------G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPG 354 (539)
Q Consensus 286 ~~Ql~FL---adR~kq~~e~~------~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~ 354 (539)
.+|++|+ +.|.+|..+.+ + ..+++||+||+++|+..+|..+.|+.|.++..++. .+..++. ++
T Consensus 82 ~lQLlf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~---~l~~~~~---~~ 155 (334)
T 1p6x_A 82 HYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALM---AMVATLP---RE 155 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHH---HHHTTCC---CC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHH---HHHHHcc---CC
Confidence 7788876 46777775543 2 23568999999999987798888888877765543 3332221 23
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 355 LIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 355 l~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
..||++|||++||+++++||++|||+.|. ++.+|+++|++.|++|+...
T Consensus 156 ~~PDLtIyLd~~pe~~l~RI~~RgR~~Er-i~~eyl~~vr~~Y~~l~~~~ 204 (334)
T 1p6x_A 156 PQGGNIVVTTLNVEEHIRRLRTRARIGEQ-IDITLIATLRNVYFMLVNTC 204 (334)
T ss_dssp CTTEEEEEEECCHHHHHHHHHHHSCTTCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCccc-CCHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999998886 78999999999999998543
No 4
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.94 E-value=1.9e-26 Score=221.12 Aligned_cols=167 Identities=16% Similarity=0.095 Sum_probs=118.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHH-HHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQ-NYVFVTRVMQE 299 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Q-l~FLadR~kq~ 299 (539)
++||+|||+||||||||+++|+++ |....-...+.||++++. ...+..++.++..++...+ ++|+++|.+|+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~-L~~~~~v~~~~eP~~t~~------g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~ 74 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHR-LVKDYDVIMTREPGGVPT------GEEIRKIVLEGNDMDIRTEAMLFAASRREHL 74 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH-HTTTSCEEEEESSTTCHH------HHHHHHHHHSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HHCCCCEEEeeCCCCChH------HHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999996 554333567899976521 2456667777777776665 45889999987
Q ss_pred HHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHH
Q 009257 300 RESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMML 376 (539)
Q Consensus 300 ~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkk 376 (539)
.+.+ + ..+.+||+||+++|. ..| +|...+.+.+.+..++.++.. . ..||++|||++||+++++|+.+
T Consensus 75 ~~~i~p~l~~g~~Vi~DRy~~S~------~ay-q~~~~~~~~~~~~~l~~~~~~-~--~~PDl~i~Ld~~~e~~~~Ri~~ 144 (205)
T 4hlc_A 75 VLKVIPALKEGKVVLCDRYIDSS------LAY-QGYARGIGVEEVRALNEFAIN-G--LYPDLTIYLNVSAEVGRERIIK 144 (205)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHH------HHH-TTTTTSSCHHHHHHHHHHHHT-T--CCCSEEEEEECCHHHHHHHHHC
T ss_pred HHHHHHHHHcCCEEEecCcccch------HHH-HhccccchHHHHHHHHHHHhc-C--CCCCEEeeeCCCHHHHHHHHHh
Confidence 6543 1 234677777766654 333 444455666667777766544 2 3899999999999999999999
Q ss_pred hcccccc--CCcHHHHHHHHHHHHHhhccC
Q 009257 377 RKRAEEG--GVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 377 RGRd~E~--~i~leYLe~L~e~YEewl~~~ 404 (539)
|+++.+. ..+.+|++++++.|.+++..+
T Consensus 145 r~~~~dr~e~~~~~f~~~v~~~Y~~l~~~~ 174 (205)
T 4hlc_A 145 NSRDQNRLDQEDLKFHEKVIEGYQEIIHNE 174 (205)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCcccchhccCHHHHHHHHHHHHHHHHhC
Confidence 9875432 237899999999999988654
No 5
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.93 E-value=2.2e-25 Score=214.22 Aligned_cols=178 Identities=34% Similarity=0.628 Sum_probs=139.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~k 297 (539)
..++++|+|+|++|||||||++.|+.. + +-..+..||+..|... .+..+++.+|.++..+++.+|...+..++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~--~--g~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~ 90 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY--K--NDICLLTEPVEKWRNV--NGVNLLELMYKDPKKWAMPFQSYVTLTMLQ 90 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG--T--TTEEEECCTHHHHTCB--TTBCHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc--c--CCeEEEecCHHHhhcc--cCCChHHHHHhChHhhhhhhHHHHHHHHHH
Confidence 357899999999999999999999873 2 2356778987765421 234566777777777888888765544443
Q ss_pred HHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 009257 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLR 377 (539)
Q Consensus 298 q~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkR 377 (539)
+..+. ...+.++.||+++||+|+|+...|+.|.++..++..|+.|+.++.+.. ...||++|||++|++++++|+.+|
T Consensus 91 ~~~~~--~i~~~l~~~r~v~~dry~~s~~ayq~~~l~~~~~~~~~~~~~~~~~~~-~~~pD~vi~Ld~~~e~~~~Ri~~R 167 (230)
T 2vp4_A 91 SHTAP--TNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESI-HVQADLIIYLRTSPEVAYERIRQR 167 (230)
T ss_dssp HHHCC--CCSSEEEEESCHHHHHHTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHB-CCCCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHhc--cccCceeecCCccccHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhh-cCCCCEEEEEeCCHHHHHHHHHHc
Confidence 33221 234678899999999999999999888888888899999988776532 247999999999999999999999
Q ss_pred ccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 378 KRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 378 GRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
+|..|...+.+|+++|+..|++|+..+
T Consensus 168 ~r~~e~~~~~~~~~rv~~~~~~~~~~~ 194 (230)
T 2vp4_A 168 ARSEESCVPLKYLQELHELHEDWLIHQ 194 (230)
T ss_dssp CCGGGTTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHh
Confidence 998776567899999999999998654
No 6
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=99.92 E-value=4.7e-26 Score=238.07 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=131.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCC---------c----
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERY---------A---- 284 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~---------S---- 284 (539)
.+++++|+|||+|||||||+++.|+++ +.... +.+++||+++|+.+ .++++|+.||.|+.+| +
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~-L~~~g-vv~trEPg~~w~~~--~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~ 121 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVAL-GSRDD-IVYVPEPMTYWRVL--GASETIANIYTTQHRLDQGEISAGDAAVVM 121 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC-----CC-EEEECCCHHHHHTT--SSSCHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH-hhhCC-EEEEeCCCCccccc--cchHHHHHHHhChhhhccccCCHHHHHHHH
Confidence 468899999999999999999999986 56554 67899999999765 2568999999988665 4
Q ss_pred HHHHHHHH------HHHHHHHHHhc------CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcC
Q 009257 285 YTFQNYVF------VTRVMQERESS------GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVL 352 (539)
Q Consensus 285 f~~Ql~FL------adR~kq~~e~~------~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~L 352 (539)
+..|++|+ ++|+++..... ...+++||+||+++|+.++|..+.|+.|.++..++..+ +.++..
T Consensus 122 a~~QL~fa~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~~l---~~~~~~-- 196 (376)
T 1of1_A 122 TSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAF---VALIPP-- 196 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHH---HHTCCC--
T ss_pred HHHHHHHhccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHHHH---HHhccc--
Confidence 35677777 44544322111 13457899999999997678877788887776655432 222211
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 353 PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 353 p~l~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
...||++||++++|+++++||++|||+.|. ++++|+++|++.|.+++...
T Consensus 197 -~~ppdlt~Lldl~pe~~l~RI~~RgR~~Er-i~leyl~rVr~~Y~~la~t~ 246 (376)
T 1of1_A 197 -TLPGTNIVLGALPEDRHIDRLAKRQRPGER-LDLAMLAAIRRVYGLLANTV 246 (376)
T ss_dssp -CCTTCEEEEEECCHHHHHHHHHHSCCTTCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEecCCHHHHHHHHHhcCCCccc-CCHHHHHHHHHHHHHHHHHH
Confidence 124678888999999999999999998776 79999999999999886553
No 7
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.92 E-value=9.4e-26 Score=232.26 Aligned_cols=174 Identities=16% Similarity=0.157 Sum_probs=128.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCC---------c----H
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERY---------A----Y 285 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~---------S----f 285 (539)
+++++|+|||+|||||||+++.|+++ +.... +.+++||+++|+.+ .+++.++.||.|+++| + +
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~-L~~~g-v~~trEPg~~w~~~--~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~ 77 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVAL-GSRDD-IVYVPEPMTYWRVL--GASETIANIYTTQHRLDQGEISAGDAAVVMT 77 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC-----CC-EEEECCCHHHHHTT--SSSCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHH-hhhCC-EEEEeCCCCccccc--ccHHHHHHHHhChhhhccccCCHHHHHHHHH
Confidence 46789999999999999999999986 55554 67899999999765 2568999999988665 4 3
Q ss_pred HHHHHHHHHHH----HHHHHhc-C--------CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcC
Q 009257 286 TFQNYVFVTRV----MQERESS-G--------GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVL 352 (539)
Q Consensus 286 ~~Ql~FLadR~----kq~~e~~-~--------~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~L 352 (539)
.+|++|+ +|+ .+..+.+ + ..+++||+||+++|+.++|..+.|+.|.++..++.. ++.++..
T Consensus 78 ~~qL~fa-~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~---l~~~~~~-- 151 (331)
T 1e2k_A 78 SAQITMG-MPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLA---FVALIPP-- 151 (331)
T ss_dssp HHHHHHH-HHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHH---HHHTCCC--
T ss_pred HHHHHHH-hhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHHH---HHHhccc--
Confidence 5567665 232 2222222 1 245789999999999767887777777777665543 3222211
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 353 PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 353 p~l~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
...||+++|++++|+++++||++|||+.|. ++.+|+++|++.|++++...
T Consensus 152 -~~ppdlt~lldl~pe~~l~RI~~Rgr~~Er-i~~~yl~rvr~~Y~~l~~t~ 201 (331)
T 1e2k_A 152 -TLPGTNIVLGALPEDRHIDRLAKRQRPGER-LDLAMLAAIRRVYGLLANTV 201 (331)
T ss_dssp -CCTTCEEEEEECCHHHHHHHHHHSCCTTCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEEcCCHHHHHHHHHhcCCCccc-CCHHHHHHHHHHHHHHHHHH
Confidence 135689999999999999999999998776 79999999999999886553
No 8
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.92 E-value=2.9e-24 Score=197.71 Aligned_cols=197 Identities=22% Similarity=0.359 Sum_probs=151.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQERE 301 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq~~e 301 (539)
|+|+|+|++||||||+++.|+++ ++. .++.||.. +..+++.||.++.++++.+|++|+++|++++..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~-l~~----~~~~e~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 67 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKK-LGY----EIFKEPVE--------ENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQ 67 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH-HCC----EEECCCGG--------GCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEECCCccCHHHHHHHHHHh-cCC----cEEccccc--------ccHHHHHHHhCccccchhHHHHHHHHHHHHHHH
Confidence 68999999999999999999996 664 35677742 346788899888788898898899999987655
Q ss_pred hcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCC-----CCCCcEEEEEeCCHHHHHHHHHH
Q 009257 302 SSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-----GLIPDGFIYLRASPDTCHKRMML 376 (539)
Q Consensus 302 ~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp-----~l~PDLIIYLdaspE~~leRIkk 376 (539)
.... + .+|+||+++++. +|+...++.|.+.+.++.+|.+++.++...+. ...||++|||++|++++++|+.+
T Consensus 68 ~~~~-~-~vi~d~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~ 144 (205)
T 2jaq_A 68 AKNL-E-NIIFDRTLLEDP-IFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKK 144 (205)
T ss_dssp -------CEEEESCTTTHH-HHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHH
T ss_pred hhcc-C-CEEEEeccchhH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHH
Confidence 4322 2 389999999885 77776677888999999999999887655441 23799999999999999999999
Q ss_pred hccccccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecCCCCcccCCCCCcccccceeeecCccccccccCCceEEEcCC
Q 009257 377 RKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSSIQKVPALVLDCE 456 (539)
Q Consensus 377 RGRd~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~~~~~~d~~~~pe~~d~V~~~~~~h~~~~~~~iPvLviD~d 456 (539)
|+|+.+...+.+|+++++..|+.++..+. ...+.++||++
T Consensus 145 R~r~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------------~~~~~~~Id~~ 184 (205)
T 2jaq_A 145 RGRSEELLIGEEYWETLNKNYEEFYKQNV----------------------------------------YDFPFFVVDAE 184 (205)
T ss_dssp HTCHHHHHSCHHHHHHHHHHHHHHHHHHT----------------------------------------TTSCEEEEETT
T ss_pred cCChhhhcCcHHHHHHHHHHHHHHHHHcc----------------------------------------ccCcEEEEECC
Confidence 99987754456899999999998875542 02467899986
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHH
Q 009257 457 PNIDFSRDIDLKRQYARQVAEFFEFVK 483 (539)
Q Consensus 457 ~~~DF~~d~~~~e~i~~~I~~fl~~v~ 483 (539)
. ..+++.++|.+.+..+.
T Consensus 185 ~---------~~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 185 L---------DVKTQIELIMNKLNSIK 202 (205)
T ss_dssp S---------CHHHHHHHHHHHHHHC-
T ss_pred C---------CHHHHHHHHHHHHHHhc
Confidence 3 45677888887776543
No 9
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.91 E-value=1.4e-23 Score=202.56 Aligned_cols=168 Identities=15% Similarity=0.066 Sum_probs=118.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcCCC--CCc-HHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPE--RYA-YTFQNYVFVT 294 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~--r~S-f~~Ql~FLad 294 (539)
|++++|+|||++||||||+++.|+++ +...++ ...+.||.++ .+ ...+..++.++. .++ ++..++|+++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~-l~~~~~~v~~~~~p~~~--~~----g~~i~~~l~~~~~~~~~~~~~~llf~a~ 76 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER-LRERGIEVQLTREPGGT--PL----AERIRELLLAPSDEPMAADTELLLMFAA 76 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH-HHTTTCCEEEEESSCSS--HH----HHHHHHHHHSCCSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCcccccCCCCC--HH----HHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 88999999999999999999999996 554432 4567898543 11 134677777663 344 4566789999
Q ss_pred HHHHHHHhcC---CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHH
Q 009257 295 RVMQERESSG---GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (539)
Q Consensus 295 R~kq~~e~~~---~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~l 371 (539)
|++|+.+.+. ..+.+||+||+++|+ ..|+ |.....+.+.+..++.+... ++ .||++|||++||++++
T Consensus 77 R~~~~~~~i~p~l~~g~~Vi~DRy~~S~------~ayq-~~~~g~~~~~~~~l~~~~~~-~~--~PDlvi~Ld~~~e~~~ 146 (213)
T 4edh_A 77 RAQHLAGVIRPALARGAVVLCDRFTDAT------YAYQ-GGGRGLPEARIAALESFVQG-DL--RPDLTLVFDLPVEIGL 146 (213)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEESCHHHH------HHHT-TTTTCCCHHHHHHHHHHHHT-TC--CCSEEEEEECCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECccHhHH------HHHh-hhccCCCHHHHHHHHHHHhc-CC--CCCEEEEEeCCHHHHH
Confidence 9998765431 234677777777665 3332 22223445556666655432 44 8999999999999999
Q ss_pred HHHHHhcc-c-cccCCcHHHHHHHHHHHHHhhccC
Q 009257 372 KRMMLRKR-A-EEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 372 eRIkkRGR-d-~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
+|+.+|++ + +|. .+.+|++++++.|+.+...+
T Consensus 147 ~Ri~~R~~~dr~E~-~~~~~~~rv~~~y~~l~~~~ 180 (213)
T 4edh_A 147 ARAAARGRLDRFEQ-EDRRFFEAVRQTYLQRAAQA 180 (213)
T ss_dssp HHHCCCSSCCTTTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcCcccc-cHHHHHHHHHHHHHHHHHHC
Confidence 99999874 2 443 36899999999999987654
No 10
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.91 E-value=7.7e-24 Score=206.80 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=110.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc-CCc-eEE-eeCCccccccCCCCccchhHhhhcCCCCCcHHHHH-HHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL-RDL-VEI-VPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQN-YVFVT 294 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a-~~~-~Ev-V~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql-~FLad 294 (539)
+++++|+|||++||||||+++.|++. +.. .++ ... +.||++++. ...++.+|.++..+++..|. +|+++
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~-l~~~~g~~v~~~treP~~t~~------g~~ir~~l~~~~~~~~~~e~llf~a~ 91 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY-LSEIYGVNNVVLTREPGGTLL------NESVRNLLFKAQGLDSLSELLFFIAM 91 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH-HHHHHCGGGEEEEESSCSSHH------HHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-HhhccCceeeEeeeCCCCChH------HHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999996 554 322 234 789965411 13455666654448888886 68899
Q ss_pred HHHHHHHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHH
Q 009257 295 RVMQERESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (539)
Q Consensus 295 R~kq~~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~l 371 (539)
|++|+.+.+ + ..+.+||+||+++|+. +| +|...+.+++.|..++.++.. | .||++|||++||++++
T Consensus 92 R~~~~~~~I~paL~~g~~VI~DRy~~S~~-Ay------q~~~~g~~~~~~~~l~~~~~~--~--~PDl~I~Ldv~~e~~~ 160 (223)
T 3ld9_A 92 RREHFVKIIKPSLMQKKIVICDRFIDSTI-AY------QGYGQGIDCSLIDQLNDLVID--V--YPDITFIIDVDINESL 160 (223)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEESCHHHHH-HH------HTTTTCCCHHHHHHHHHHHCS--S--CCSEEEEEECC-----
T ss_pred HHHHHHHHHHHHHhcCCeEEEccchhhHH-Hh------ccccCCccHHHHHHHHHHhhc--C--CCCeEEEEeCCHHHHH
Confidence 999987632 1 2356788888777763 33 344456677888888776643 4 8999999999999999
Q ss_pred HHHHHhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 372 KRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 372 eRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
+|+ +|+| +|. .+.+|++++++.|++|+..+
T Consensus 161 ~Ri-~rdr-~E~-~~~e~~~rv~~~y~~la~~~ 190 (223)
T 3ld9_A 161 SRS-CKNG-YEF-ADMEFYYRVRDGFYDIAKKN 190 (223)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHC
T ss_pred HHh-ccCc-ccc-chHHHHHHHHHHHHHHHHHC
Confidence 999 6766 554 57999999999999998765
No 11
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.91 E-value=3.4e-25 Score=228.98 Aligned_cols=175 Identities=14% Similarity=0.172 Sum_probs=129.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHH-HHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCC-----CCCc-------
Q 009257 218 PKKRITFCVEGNISVGKTTFL-QRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAP-----ERYA------- 284 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLa-klLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp-----~r~S------- 284 (539)
.+++++|+|||++||||||++ ++|+++ +...+...+++||++.|+.. .+++.++.+|.++ .+++
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~-l~~~g~vv~trEPgg~w~t~--~g~e~lr~i~l~~~~~~~~~~s~~~a~~~ 85 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHF-AITPNRILLIGEPLSYWRNL--AGEDAICGIYGTQTRRLNGDVSPEDAQRL 85 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTT-TTSGGGEEEECCCHHHHTTB--TTBCHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHH-HhhCCcEEEEeCCCccccCc--ccHHHHHHHHhchhhhcccccchhhhhHH
Confidence 357899999999999999999 999986 55443467899999999865 2446777887643 3344
Q ss_pred -HHHHHHH------HHHHHHHHHH-hc-------CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHH
Q 009257 285 -YTFQNYV------FVTRVMQERE-SS-------GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVV 349 (539)
Q Consensus 285 -f~~Ql~F------LadR~kq~~e-~~-------~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~ 349 (539)
+.+|++| +++|+.+... .+ ...+.+||+||+++|+.++|..+.+..|.++..++. .++.++.
T Consensus 86 ~~e~ql~fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~~---~L~~~~~ 162 (341)
T 1osn_A 86 TAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALP---GLLFTLP 162 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHH---HHHTTCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHHH---HHHHhhh
Confidence 5567666 6677654221 11 134567899999999988888877888988887764 3444432
Q ss_pred hcCCCCCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhc
Q 009257 350 SVLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLF 402 (539)
Q Consensus 350 ~~Lp~l~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~ 402 (539)
. +..||++|||+++++++++||++|||+.|. ++.+|+++|++.|++++.
T Consensus 163 ~---~~~PDltI~Ld~~pe~~l~RI~~RgR~~Er-ie~~yl~rvr~~Y~~l~~ 211 (341)
T 1osn_A 163 A---EPPGTNLVVCTVSLPSHLSRVSKRARPGET-VNLPFVMVLRNVYIMLIN 211 (341)
T ss_dssp C---CCSCCEEEEEECCHHHHHHHCC------CC-CCHHHHHHHHHHHHHHHH
T ss_pred c---CCCCCeEEEEeCCHHHHHHHHHhhCCCccc-CCHHHHHHHHHHHHHHHH
Confidence 2 357999999999999999999999998886 789999999999999876
No 12
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.90 E-value=7.7e-23 Score=197.73 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=115.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc--eEEeeCCccccccCCCCccchhHhhhcCCC-----CCcH-HHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL--VEIVPEPIDKWQDVGPDHFNILGAYYDAPE-----RYAY-TFQNY 290 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~--~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~-----r~Sf-~~Ql~ 290 (539)
|++++|+|||++||||||+++.|+++ +...++ ..++.||.++ .+ + ..++.++.++. .+.. +..++
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~-l~~~~~~~v~~~rep~~t--~~---g-~~ir~~l~~~~~~~~~~~~~~~e~lL 73 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVET-LEQLGIRDMVFTREPGGT--QL---A-EKLRSLLLDIKSVGDEVITDKAEVLM 73 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHH-HHHTTCCCEEEEESSCSS--HH---H-HHHHHHHHSTTTTTTCCCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-HHHcCCCcceeeeCCCCC--HH---H-HHHHHHHhcccccccccCChHHHHHH
Confidence 67899999999999999999999996 554443 4678999654 11 2 34455555432 3343 34456
Q ss_pred HHHHHHHHHHHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCH
Q 009257 291 VFVTRVMQERESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASP 367 (539)
Q Consensus 291 FLadR~kq~~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdasp 367 (539)
|+++|.+|+.+.+ + ..+.+||+||+++|. ..|+ |...+.+.+.+..+..+... ++ .||++|||++|+
T Consensus 74 ~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~------~AYq-~~~~g~~~~~~~~l~~~~~~-~~--~PDl~i~Ldv~~ 143 (213)
T 4tmk_A 74 FYAARVQLVETVIKPALANGTWVIGDRHDLST------QAYQ-GGGRGIDQHMLATLRDAVLG-DF--RPDLTLYLDVTP 143 (213)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEECCHHHH------HHHT-TTTTCCCHHHHHHHHHHHHT-TC--CCSEEEEEECCH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHH------HHHc-ccccCCCHHHHHHHHHHhcc-CC--CCCEEEEEeCCH
Confidence 8999999886643 1 235677777776665 3342 32233344455555555432 33 899999999999
Q ss_pred HHHHHHHHHhcc--ccccCCcHHHHHHHHHHHHHhhc
Q 009257 368 DTCHKRMMLRKR--AEEGGVSLDYLRSLHEKHENWLF 402 (539)
Q Consensus 368 E~~leRIkkRGR--d~E~~i~leYLe~L~e~YEewl~ 402 (539)
+++++|+.+|++ .+|. .+.+|++++++.|+.+..
T Consensus 144 e~~~~Ri~~R~~~dr~E~-~~~~f~~rv~~~y~~la~ 179 (213)
T 4tmk_A 144 EVGLKRARARGELDRIEQ-ESFDFFNRTRARYLELAA 179 (213)
T ss_dssp HHHHHHHHHHSSCCTTTT-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccchhh-hHHHHHHHHHHHHHHHHH
Confidence 999999999975 2342 478999999999999874
No 13
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.90 E-value=1e-23 Score=206.10 Aligned_cols=168 Identities=15% Similarity=-0.004 Sum_probs=113.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC----C-ceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR----D-LVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFV 293 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~----~-~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLa 293 (539)
+++++|+|||++||||||+++.|++. +... + -...+.||.++ . .| ..++.++.++.-..++..++|++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~-l~~~~~~~g~~v~~~rep~~t--~---~g-~~ir~~l~~~~~~~~~~~llf~a 95 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR-LQERLGPAGRHVVVTREPGGT--R---LG-ETLREILLNQPMDLETEALLMFA 95 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH-HHHHHGGGTCCEEEEESSSSS--H---HH-HHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH-HHhhccccceeeeeecCCCCC--h---HH-HHHHHHHHcCCCCHHHHHHHHHH
Confidence 47899999999999999999999997 4432 2 23578899543 1 11 34666776653334566778999
Q ss_pred HHHHHHHHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHH
Q 009257 294 TRVMQERESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTC 370 (539)
Q Consensus 294 dR~kq~~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~ 370 (539)
+|++|+.+.+ + ..+.+||+||+++|+. +|. |...+.+.+.+..++.++.. +| .||++|||++|++++
T Consensus 96 ~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~-ayq------~~~~gl~~~~~~~l~~~~~~-~~--~PDl~I~Ldv~~e~~ 165 (227)
T 3v9p_A 96 GRREHLALVIEPALARGDWVVSDRFTDATF-AYQ------GGGRGLPRDKLEALERWVQG-GF--QPDLTVLFDVPPQIA 165 (227)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEECCHHHHH-HHH------TTTTCCCHHHHHHHHHHHHT-TC--CCSEEEEEECCSSCG
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeccHhHHH-HHh------hhccCCCHHHHHHHHHHHhc-CC--CCCEEEEEeCCHHHH
Confidence 9999876532 1 2356788888777763 342 22223344555566555432 44 899999999999999
Q ss_pred HHHHHHhcc--ccccCCcHHHHHHHHHHHHHhhccC
Q 009257 371 HKRMMLRKR--AEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 371 leRIkkRGR--d~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
++|+.+|+. .+|. .+.+|++++++.|+.++..+
T Consensus 166 ~~Ri~~R~~~dr~E~-~~~ef~~rv~~~Y~~la~~~ 200 (227)
T 3v9p_A 166 SARRGAVRMPDKFES-ESDAFFARTRAEYLRRAQEA 200 (227)
T ss_dssp GGTTTCCCCC---CC-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCccchhh-hhHHHHHHHHHHHHHHHHHh
Confidence 999999862 2442 36899999999999998654
No 14
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.89 E-value=1.1e-22 Score=193.46 Aligned_cols=162 Identities=21% Similarity=0.142 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQER 300 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq~~ 300 (539)
|||+|||++|||||||+++|+++ |...+. ...+.||++++. + ..+..++.+........-++|+++|..+..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~-L~~~g~~v~~treP~~t~~-----~-~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~ 73 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQY-LEKRGKKVILKREPGGTET-----G-EKIRKILLEEEVTPKAELFLFLASRNLLVT 73 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCSSHH-----H-HHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCCcEEEEECCCCCcH-----H-HHHHHHhhcccCChHHHHHHHHHHHHHHHH
Confidence 79999999999999999999996 554443 557899976522 2 233333333322223333456677766554
Q ss_pred HhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 009257 301 ESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 301 e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRG 378 (539)
.+.+ ..+.+||+||+++|. ..|+ |.......+....++.+... +..||++|||++||+++++|...|.
T Consensus 74 ~I~~~L~~g~~Vi~DRy~~S~------~ayq-~~~~~~~~~~i~~l~~~~~~---~~~PDl~i~Ld~~~e~~~~R~~~~d 143 (197)
T 3hjn_A 74 EIKQYLSEGYAVLLDRYTDSS------VAYQ-GFGRNLGKEIVEELNDFATD---GLIPDLTFYIDVDVETALKRKGELN 143 (197)
T ss_dssp HHHHHHTTTCEEEEESCHHHH------HHHH-TTTTCSCHHHHHHHHHHHHT---TCCCSEEEEEECCHHHHHHHC---C
T ss_pred HHHHHHHCCCeEEecccchHH------HHHH-HhccCCCHHHHHHHHhhhhc---CCCCCceeecCcChHHHHHhCcCcC
Confidence 4332 345677777766654 3332 33334444555566655543 2479999999999999999987776
Q ss_pred cccccCCcHHHHHHHHHHHHHhhccC
Q 009257 379 RAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 379 Rd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
| +| ..+|++++++.|.+++..+
T Consensus 144 r-~e---~~ef~~rv~~~y~~la~~~ 165 (197)
T 3hjn_A 144 R-FE---KREFLERVREGYLVLAREH 165 (197)
T ss_dssp T-TC---CHHHHHHHHHHHHHHHHHC
T ss_pred c-cc---cHHHHHHHHHHHHHHHHhC
Confidence 5 34 3589999999999987654
No 15
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.89 E-value=3.8e-22 Score=196.07 Aligned_cols=170 Identities=16% Similarity=0.127 Sum_probs=112.7
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc--eEEeeCCccccccCCCCccchhHhhh-cCC--CCCcHHHHH-H
Q 009257 217 APKKRITFCVEGNISVGKTTFLQRIANETLELRDL--VEIVPEPIDKWQDVGPDHFNILGAYY-DAP--ERYAYTFQN-Y 290 (539)
Q Consensus 217 ~~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~--~EvV~EPi~~W~~i~~~g~~lLe~FY-~Dp--~r~Sf~~Ql-~ 290 (539)
..|++++|+|||++||||||+++.|++. +....+ ...+.||.++ . .+ ..+..++ .++ ..++...+. +
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~-l~~~~~~~~~~~rep~~t--~---~g-~~ir~~l~~~~~~~~~~~~~e~lL 95 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVET-LQQNGIDHITRTREPGGT--L---LA-EKLRALVKEEHPGEELQDITELLL 95 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHH-HHHTTCCCEEEEESSCSS--H---HH-HHHHHHHHSCCTTSCCCHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH-HHhcCCCeeeeecCCCCC--H---HH-HHHHHHHhhCCCcccCCHHHHHHH
Confidence 3588999999999999999999999996 554432 4567898543 1 12 2233333 243 356666665 5
Q ss_pred HHHHHHHHHHHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCH
Q 009257 291 VFVTRVMQERESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASP 367 (539)
Q Consensus 291 FLadR~kq~~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdasp 367 (539)
|+++|++|+.+.+ + ..+.+||+||+++|+. +| +|...+.+.+.+..++.++.. +| .||++|||++||
T Consensus 96 f~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~-AY------q~~~rgl~~~~i~~l~~~~~~-~~--~PDlvi~Ldv~~ 165 (236)
T 3lv8_A 96 VYAARVQLVENVIKPALARGEWVVGDRHDMSSQ-AY------QGGGRQIAPSTMQSLKQTALG-DF--KPDLTLYLDIDP 165 (236)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHH-HH------TTTTTCCCHHHHHHHHHHHHT-TC--CCSEEEEEECCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeecchHH-hh------hhhccCCCHHHHHHHHHHHhc-CC--CCCEEEEEeCCH
Confidence 8899999886543 1 2356788888777663 33 233233445556666655543 44 899999999999
Q ss_pred HHHHHHHHHhcc--ccccCCcHHHHHHHHHHHHHhhccC
Q 009257 368 DTCHKRMMLRKR--AEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 368 E~~leRIkkRGR--d~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
+++++|+.+|+. .+|. .+.+|++++++.|+.+...+
T Consensus 166 e~~~~Ri~~R~~~dr~E~-~~~~~~~rv~~~y~~la~~~ 203 (236)
T 3lv8_A 166 KLGLERARGRGELDRIEK-MDISFFERARERYLELANSD 203 (236)
T ss_dssp HHHHHC-----CCCTTTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCcchhhh-hHHHHHHHHHHHHHHHHHHC
Confidence 999999999974 2443 36899999999999987643
No 16
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.87 E-value=2.6e-22 Score=194.86 Aligned_cols=161 Identities=15% Similarity=0.114 Sum_probs=114.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCc-cccccCCCCccchhHhhhcCCC-CC-cHHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPI-DKWQDVGPDHFNILGAYYDAPE-RY-AYTFQNYVFVTRV 296 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi-~~W~~i~~~g~~lLe~FY~Dp~-r~-Sf~~Ql~FLadR~ 296 (539)
++++|+|||++||||||+++.|+++ ++.. ...+.||. ++ . -...++.++.++. .+ .++.+++|+++|+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~-l~~~--~~~~~ep~~~t--~----~g~~ir~~l~~~~~~~~~~~~~llf~a~R~ 74 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK-LQPN--CKLLKFPERST--R----IGGLINEYLTDDSFQLSDQAIHLLFSANRW 74 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH-HCSS--EEEEESSCTTS--H----HHHHHHHHHHCTTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-hccc--ceEEEecCCCC--h----HHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999997 5652 45678884 22 0 1134677787764 33 4677888999999
Q ss_pred HHHHHhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEE-eCCHHHHHHH
Q 009257 297 MQERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYL-RASPDTCHKR 373 (539)
Q Consensus 297 kq~~e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYL-daspE~~leR 373 (539)
++...+.+ ..+.+||+||+++|+. +|... .| ++..++..+.++ ...+| .||++||| ++||+++++|
T Consensus 75 ~~~~~I~paL~~g~~VI~DRy~~S~~-ayq~~---~~-l~~~~~~~l~~~----~~~~~--~PDlti~L~dv~pe~~~~R 143 (216)
T 3tmk_A 75 EIVDKIKKDLLEGKNIVMDRYVYSGV-AYSAA---KG-TNGMDLDWCLQP----DVGLL--KPDLTLFLSTQDVDNNAEK 143 (216)
T ss_dssp TTHHHHHHHHHTTCEEEEESCHHHHH-HHHHT---TC-CTTCCHHHHHGG----GTTSB--CCSEEEEEECSCCSCGGGC
T ss_pred HHHHHHHHHHHcCCEEEEeccHhHHH-HHHHh---cC-CCHHHHHHHHHH----hhCCC--CCCEEEEEeCCCHHHHHHH
Confidence 85443322 2457888888888773 45321 12 444455433322 22344 89999999 9999999999
Q ss_pred HHHhccccccCCcHHHHHHHHHHHHHhhcc
Q 009257 374 MMLRKRAEEGGVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 374 IkkRGRd~E~~i~leYLe~L~e~YEewl~~ 403 (539)
+.+|++.+|. .+|+++|++.|++|+..
T Consensus 144 ~~~~~dr~E~---~~f~~rvr~~Y~~la~~ 170 (216)
T 3tmk_A 144 SGFGDERYET---VKFQEKVKQTFMKLLDK 170 (216)
T ss_dssp CSSSCCTTCC---HHHHHHHHHHHHHHHHH
T ss_pred hccCcccccH---HHHHHHHHHHHHHHHHh
Confidence 8766555663 79999999999999865
No 17
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.82 E-value=1.5e-19 Score=175.20 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=106.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHH-HHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTF-QNYVFVTRV 296 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~-Ql~FLadR~ 296 (539)
..++++|+|+|++||||||+++.|++. ++.......+.||.++.. ...+..++.++..+.... .++|.++|+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~-l~~~~~~~~~~~p~~~~~------g~~i~~~~~~~~~~~~~~~~ll~~a~r~ 95 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR-LVKDYDVIMTREPGGVPT------GEEIRKIVLEGNDMDIRTEAMLFAASRR 95 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH-HTTTSCEEEECTTTTCHH------HHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH-HhcCCCceeecCCCCCch------HHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999996 553112345677754311 234566676665444444 456788898
Q ss_pred HHHHHhc-C--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHH
Q 009257 297 MQERESS-G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKR 373 (539)
Q Consensus 297 kq~~e~~-~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leR 373 (539)
.++.+.+ + ..+.+||+||+++|+. +| +|.-...+...+..+..+.. .. ..||++|||++|++++++|
T Consensus 96 ~~~~~~i~~~l~~g~~Vi~DRy~~s~~-ay------qg~~r~~~~~~~~~l~~~~~-~~--~~pd~vi~L~~~~e~~~~R 165 (229)
T 4eaq_A 96 EHLVLKVIPALKEGKVVLCDRYIDSSL-AY------QGYARGIGVEEVRALNEFAI-NG--LYPDLTIYLNVSAEVGRER 165 (229)
T ss_dssp HHCCCCCHHHHHTTCEEEEECCHHHHC-CC------CCCCSCSCHHHHHHHHHHHH-TT--CCCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEECCchhHHH-HH------HHhhcCCCHHHHHHHHHHHh-cC--CCCCEEEEEeCCHHHHHHH
Confidence 8743211 0 1346788888877763 34 33221222222222222222 23 3899999999999999999
Q ss_pred HHHhcccccc--CCcHHHHHHHHHHHHHhhccC
Q 009257 374 MMLRKRAEEG--GVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 374 IkkRGRd~E~--~i~leYLe~L~e~YEewl~~~ 404 (539)
+.+|++..+. ....+|++++++.|+++...+
T Consensus 166 ~~~R~~~~dr~e~~~~~~~~rv~~~y~~l~~~~ 198 (229)
T 4eaq_A 166 IIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNE 198 (229)
T ss_dssp HHHC-----CCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCccchhhhhHHHHHHHHHHHHHHHHhC
Confidence 9999764332 136889999999999987543
No 18
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.78 E-value=5.5e-18 Score=155.50 Aligned_cols=160 Identities=19% Similarity=0.093 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh---ccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETL---ELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L---~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq 298 (539)
|+|+|+|++||||||+++.|++. + +.. ...+.||.++.. + ..+..++.+..-......++|.++|..+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~-l~~~g~~--v~~~~~~~~~~~-----g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 71 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQY-LEKRGKK--VILKREPGGTET-----G-EKIRKILLEEEVTPKAELFLFLASRNLL 71 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-HHHCCC---EEEEESSCSSHH-----H-HHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCCe--EEEeeCCCCCcH-----H-HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999996 5 433 345678754311 1 2334444332222334555678889887
Q ss_pred HHHhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHH
Q 009257 299 ERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMML 376 (539)
Q Consensus 299 ~~e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkk 376 (539)
...+.+ ..+..+++||+++|. ..|+ |.....+...+..+..+.. ..+ .||++|||++|++++++|+.+
T Consensus 72 ~~~i~~~l~~g~~vi~dr~~~s~------~~~~-~~~~~~~~~~~~~~~~~~~-~~~--~~d~vi~l~~~~e~~~~Rl~~ 141 (197)
T 2z0h_A 72 VTEIKQYLSEGYAVLLDRYTDSS------VAYQ-GFGRNLGKEIVEELNDFAT-DGL--IPDLTFYIDVDVETALKRKGE 141 (197)
T ss_dssp HHHHTTC----CEEEEESCHHHH------HHHT-TTTTCSCHHHHHHHHHHHH-TTC--CCSEEEEEECCHHHHHHHC--
T ss_pred HHHHHHHHhCCCEEEECCChhHH------HHHH-HhccCCCHHHHHHHHHHhc-CCC--CCCEEEEEeCCHHHHHHHHhc
Confidence 766322 223456666655544 3332 3222333333444443332 233 799999999999999999999
Q ss_pred hccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 377 RKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 377 RGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
|++. |. .+|++++...|+.+...+
T Consensus 142 R~~~-~~---~~~~~~~~~~~~~~~~~~ 165 (197)
T 2z0h_A 142 LNRF-EK---REFLERVREGYLVLAREH 165 (197)
T ss_dssp -CCC-CC---HHHHHHHHHHHHHHHHHC
T ss_pred cCcc-cH---HHHHHHHHHHHHHHHHhC
Confidence 9653 32 289999999999986543
No 19
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.70 E-value=4.6e-16 Score=143.71 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=96.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCC---CCcHH-HHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE---RYAYT-FQNYVFVT 294 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~---r~Sf~-~Ql~FLad 294 (539)
|++++|+|+|++||||||+++.|+++ ++..+-...+.+|.+ ..+..++.++. .+... .+++|.++
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~-l~~~g~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDW-IELKRDVYLTEWNSS----------DWIHDIIKEAKKKDLLTPLTFSLIHATD 70 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH-HTTTSCEEEEETTCC----------CHHHHHHHHHTTTSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH-HhhcCCEEEecCCcH----------HHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 56899999999999999999999996 565421233566632 23344443322 23333 34456677
Q ss_pred HHHHHHHhc---CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHH
Q 009257 295 RVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (539)
Q Consensus 295 R~kq~~e~~---~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~l 371 (539)
|+.++...+ ...+..+|+||++++.. +| +.+ ...+.+.+.. +...++ .||++|||++|+++++
T Consensus 71 r~~~~~~~i~~~l~~g~~vi~D~~~~~~~-~~-----~~~--~~~~~~~~~~----l~~~~~--~~~~vi~l~~~~e~~~ 136 (213)
T 2plr_A 71 FSDRYERYILPMLKSGFIVISDRYIYTAY-AR-----DSV--RGVDIDWVKK----LYSFAI--KPDITFYIRVSPDIAL 136 (213)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEESCHHHHH-HH-----HHT--TTCCHHHHHH----HTTTSC--CCSEEEEEECCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHhHHH-HH-----HHh--hCCCHHHHHH----HHhcCC--CCCEEEEEeCCHHHHH
Confidence 776553221 01345778888776542 23 211 1222333333 222233 6999999999999999
Q ss_pred HHHH-Hhcc--ccccC-----------CcHHHHHHHHHHHHHhh
Q 009257 372 KRMM-LRKR--AEEGG-----------VSLDYLRSLHEKHENWL 401 (539)
Q Consensus 372 eRIk-kRGR--d~E~~-----------i~leYLe~L~e~YEewl 401 (539)
+|+. +|+. ..+.+ ...+|+++++..|+++.
T Consensus 137 ~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~ 180 (213)
T 2plr_A 137 ERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLV 180 (213)
T ss_dssp HHHHHTTCCCCTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHH
Confidence 9998 8872 21100 01578888888888875
No 20
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.69 E-value=7.7e-16 Score=140.32 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh---ccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHH-HHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETL---ELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQ-NYVFVTRVM 297 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L---~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Q-l~FLadR~k 297 (539)
|+|+|+|++||||||+++.|+++ + +.. ...+.||.... .+ ..+..++.+. .+.+..+ +++..+|++
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~-l~~~g~~--~i~~d~~~~~~-----~~-~~i~~~~~~g-~~~~~~~~~~~~~~~~~ 70 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEY-LKQKGYF--VSLYREPGGTK-----VG-EVLREILLTE-ELDERTELLLFEASRSK 70 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHH-HHHTTCC--EEEEESSCSSH-----HH-HHHHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCCe--EEEEeCCCCCc-----hH-HHHHHHHcCC-CCCHHHHHHHHHHHHHH
Confidence 68999999999999999999996 4 333 23345664320 11 1233444433 3444433 445567766
Q ss_pred HHHHhc---CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHH
Q 009257 298 QERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (539)
Q Consensus 298 q~~e~~---~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRI 374 (539)
++...+ -..+..+|+||+++|. ..+. |.....+.+.+.++..++.. +..||++|||++|++++++|+
T Consensus 71 ~l~~~i~~~l~~~~~vi~dr~~~~~------~~~~-g~~~~~~~~~~~~~~~~~~~---~~~~d~vi~l~~~~e~~~~Rl 140 (195)
T 2pbr_A 71 LIEEKIIPDLKRDKVVILDRFVLST------IAYQ-GYGKGLDVEFIKNLNEFATR---GVKPDITLLLDIPVDIALRRL 140 (195)
T ss_dssp HHHHTHHHHHHTTCEEEEESCHHHH------HHHH-TTTTCCCHHHHHHHHHHHHT---TCCCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECcchhHH------HHHc-cccCCCCHHHHHHHHHHhhc---CCCCCEEEEEeCCHHHHHHHh
Confidence 554322 1123556667766544 2232 33223333334444333322 236999999999999999999
Q ss_pred HHhccccccCCcHHHHHHHHHHHHHhhc
Q 009257 375 MLRKRAEEGGVSLDYLRSLHEKHENWLF 402 (539)
Q Consensus 375 kkRGRd~E~~i~leYLe~L~e~YEewl~ 402 (539)
.+|++. + ..+|++++.+.|+++..
T Consensus 141 ~~r~~~-~---~~~~~~~~~~~~~~~~~ 164 (195)
T 2pbr_A 141 KEKNRF-E---NKEFLEKVRKGFLELAK 164 (195)
T ss_dssp HTTTCC-C---CHHHHHHHHHHHHHHHH
T ss_pred hccCcc-c---hHHHHHHHHHHHHHHHh
Confidence 877652 2 57799999999998764
No 21
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.66 E-value=1.4e-15 Score=140.59 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHh-ccCCceEEeeCCc-cccccCCCCccchhHhhhcCCCCCc-HHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETL-ELRDLVEIVPEPI-DKWQDVGPDHFNILGAYYDAPERYA-YTFQNYVFVTRV 296 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L-~a~~~~EvV~EPi-~~W~~i~~~g~~lLe~FY~Dp~r~S-f~~Ql~FLadR~ 296 (539)
++++|+|+|++||||||+++.|+++ + +.. ...+.||+ ..+. + ..+..++.+...+. ...+++|.++|+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~-l~g~~--~~~~~~~~~~~~~-----g-~~i~~~~~~~~~~~~~~~~~l~~~~r~ 73 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES-IPANT--IKYLNFPQRSTVT-----G-KMIDDYLTRKKTYNDHIVNLLFCANRW 73 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT-SCGGG--EEEEESSCTTSHH-----H-HHHHHHHTSSCCCCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HCCCc--eEEEecCCCCCcH-----H-HHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999996 4 232 33467775 3211 1 23444443322222 223555667776
Q ss_pred HHHHHhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHH
Q 009257 297 MQERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (539)
Q Consensus 297 kq~~e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRI 374 (539)
.+...+.+ ..+..+|+||+++|. ++|+.. .| .+.+ |...+....+ .||++|||++|++++++
T Consensus 74 ~~~~~i~~~l~~~~~vi~Dr~~~s~-~~~~~~---~g----~~~~----~~~~~~~~~~--~~d~vi~l~~~~e~~~~-- 137 (204)
T 2v54_A 74 EFASFIQEQLEQGITLIVDRYAFSG-VAYAAA---KG----ASMT----LSKSYESGLP--KPDLVIFLESGSKEINR-- 137 (204)
T ss_dssp TTHHHHHHHHHTTCEEEEESCHHHH-HHHHHH---TT----CCHH----HHHHHHTTSB--CCSEEEEECCCHHHHTT--
T ss_pred HHHHHHHHHHHCCCEEEEECchhhH-HHHHHc---cC----CCHH----HHHHHhcCCC--CCCEEEEEeCCHHHHHh--
Confidence 54321110 134678888888766 244421 12 1222 2222222232 79999999999999988
Q ss_pred HHhccccccCCcHHHHHHHHHHHHHhhc
Q 009257 375 MLRKRAEEGGVSLDYLRSLHEKHENWLF 402 (539)
Q Consensus 375 kkRGRd~E~~i~leYLe~L~e~YEewl~ 402 (539)
+|+++..+ ..+|+++++..|+++..
T Consensus 138 -~R~~d~~e--~~~~~~rl~~~y~~~~~ 162 (204)
T 2v54_A 138 -NVGEEIYE--DVTFQQKVLQEYKKMIE 162 (204)
T ss_dssp -CCSSSTTC--CSHHHHHHHHHHHHHHT
T ss_pred -hcCccccc--HHHHHHHHHHHHHHHHH
Confidence 56543211 35899999999999864
No 22
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.64 E-value=7.2e-15 Score=136.50 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcCCCCCc-HHHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYA-YTFQNYVFVTRVM 297 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~S-f~~Ql~FLadR~k 297 (539)
++++|+|+|++||||||+++.|+++ ++...+ ...+.||... .. .+ ..+..++.+...+. .....+|.++|++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~-l~~~~~~v~~~~~~~~~-~~---~~-~~i~~~~~~~~~~~~~~~~~~~~~~r~~ 81 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA-LCAAGHRAELLRFPERS-TE---IG-KLLSSYLQKKSDVEDHSVHLLFSANRWE 81 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCTT-SH---HH-HHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHHcCCcEEEeeCCCCC-Cc---HH-HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999986 554432 2345666310 00 01 22334443222222 2233455666655
Q ss_pred HHHHhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHH
Q 009257 298 QERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMM 375 (539)
Q Consensus 298 q~~e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIk 375 (539)
+.....+ ..+..+|+||+++|+ ++|.. +.. ..+. +|...+...++ .||++|||++|++++++|+.
T Consensus 82 ~~~~i~~~l~~~~~vi~dr~~~s~-~~~~~-----~~~-~~~~----~~~~~l~~~~~--~~d~vi~l~~~~e~~~~Rl~ 148 (215)
T 1nn5_A 82 QVPLIKEKLSQGVTLVVDRYAFSG-VAFTG-----AKE-NFSL----DWCKQPDVGLP--KPDLVLFLQLQLADAAKRGA 148 (215)
T ss_dssp THHHHHHHHHTTCEEEEESCHHHH-HHHHH-----TST-TCCH----HHHHGGGTTSB--CCSEEEEEECCHHHHHHC--
T ss_pred HHHHHHHHHHCCCEEEEeCCcccH-HHHHh-----hcC-CCCH----HHHHHHHhCCC--CCCEEEEEeCCHHHHHHHhc
Confidence 4221110 134577888887765 23321 110 1111 22222222232 68999999999999999997
Q ss_pred HhccccccCCcHHHHHHHHHHHHHhhc
Q 009257 376 LRKRAEEGGVSLDYLRSLHEKHENWLF 402 (539)
Q Consensus 376 kRGRd~E~~i~leYLe~L~e~YEewl~ 402 (539)
+|....| ..+|+++++..|+.+..
T Consensus 149 r~~~~~~---~~~~~~~~~~~~~~~~~ 172 (215)
T 1nn5_A 149 FGHERYE---NGAFQERALRCFHQLMK 172 (215)
T ss_dssp ---CTTC---SHHHHHHHHHHHHHHTT
T ss_pred cCccccc---hHHHHHHHHHHHHHHHH
Confidence 4422233 36899999999998764
No 23
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.63 E-value=4.6e-15 Score=132.74 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQERE 301 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq~~e 301 (539)
++|+|+|++||||||+++.|++. ++.. ++..+ .+..... + .+. ++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~-l~~~----~i~~d------------~~~~~~~-------~-~~~-----~~~~~~~ 51 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE-LKYP----IIKGS------------SFELAKS-------G-NEK-----LFEHFNK 51 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH-HCCC----EEECC------------CHHHHTT-------C-HHH-----HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-hCCe----eecCc------------ccccchh-------H-HHH-----HHHHHHH
Confidence 48999999999999999999986 5643 34332 1111100 0 111 1112222
Q ss_pred hcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhcccc
Q 009257 302 SSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRAE 381 (539)
Q Consensus 302 ~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRGRd~ 381 (539)
.. .+..++.||+++++. +|+.. +.........+...+. ..++ .||++|||++|++++++|+.+|+|+.
T Consensus 52 l~--~~~~vi~dr~~~~~~-v~~~~----~~~~~~~~~~~~~~l~---~~~~--~~~~~i~l~~~~e~~~~R~~~r~r~~ 119 (173)
T 3kb2_A 52 LA--DEDNVIIDRFVYSNL-VYAKK----FKDYSILTERQLRFIE---DKIK--AKAKVVYLHADPSVIKKRLRVRGDEY 119 (173)
T ss_dssp HT--TCCSEEEESCHHHHH-HHTTT----BTTCCCCCHHHHHHHH---HHHT--TTEEEEEEECCHHHHHHHHHHHSCSC
T ss_pred HH--hCCCeEEeeeecchH-HHHHH----HHHhhHhhHHHHHHHh---ccCC--CCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence 21 235677888776553 45321 1001111112222222 2223 68999999999999999999998876
Q ss_pred ccCCcHHHHHHHHHHHHHhhccC
Q 009257 382 EGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 382 E~~i~leYLe~L~e~YEewl~~~ 404 (539)
+. .++++++.+.|+.+...+
T Consensus 120 ~~---~~~~~~~~~~~~~~~~~~ 139 (173)
T 3kb2_A 120 IE---GKDIDSILELYREVMSNA 139 (173)
T ss_dssp CC---HHHHHHHHHHHHHHHHTC
T ss_pred hh---hhHHHHHHHHHHHHHhhc
Confidence 63 579999999999987554
No 24
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.57 E-value=1.1e-15 Score=142.28 Aligned_cols=180 Identities=16% Similarity=0.127 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHh----hhcCCCCCcHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGA----YYDAPERYAYTFQNYVFVTRV 296 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~----FY~Dp~r~Sf~~Ql~FLadR~ 296 (539)
|+|+|+|++||||||+++.|++. ++..++ ..++.||...+. + .+..+... ++..+. ..+..+++|.++|+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~-l~~~g~~v~~~~~~~~~~~-~--~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~r~ 75 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGA-FRAAGRSVATLAFPRYGQS-V--AADIAAEALHGEHGDLAS-SVYAMATLFALDRA 75 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHH-HHEEEEEEEEEESSEEEEE-E--EEEEHHHHEEEEEEEEEE-EHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH-HHhcCCeEEEEeecCCCCc-c--hhhHHHHHHcccccccCC-CHhHHHHHHHHHHh
Confidence 58999999999999999999986 543322 234566641100 0 01122211 111111 34566677778887
Q ss_pred HHHHHhc--CCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHH---hcCCCCCCcEEEEEeCCHHHHH
Q 009257 297 MQERESS--GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVV---SVLPGLIPDGFIYLRASPDTCH 371 (539)
Q Consensus 297 kq~~e~~--~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~---~~Lp~l~PDLIIYLdaspE~~l 371 (539)
.+...+. ...+..+|+||+++|+. +|.. +.+.+.++..|.+|...+. ..++ .||++|||++++++++
T Consensus 76 ~~~~~i~~~l~~g~~vi~D~~~~s~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~l~~~~~~~~ 147 (214)
T 1gtv_A 76 GAVHTIQGLCRGYDVVILDRYVASNA-AYSA-----ARLHENAAGKAAAWVQRIEFARLGLP--KPDWQVLLAVSAELAG 147 (214)
T ss_dssp EEHHHHHHEEEEEEEEEEEEEEHHHH-HHHH-----HHEEEEEEEHHHHHHHHHHEEEEECC--BCEEEEEEEEEHHHHH
T ss_pred hhHHHHHHHhhCCCEEEECCCcccch-hhhh-----cccCccccHHHHHHHHhcccccccCC--CCCEEEEEeCCHHHHH
Confidence 5521111 12245788899888763 4432 1222233445556655442 1233 7999999999999999
Q ss_pred HHHHHhccc--------cccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecCC
Q 009257 372 KRMMLRKRA--------EEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSK 416 (539)
Q Consensus 372 eRIkkRGRd--------~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~ 416 (539)
+|+.+|++. .|. ..+|+++++..|+++...+....+.+||++.
T Consensus 148 ~R~~~R~~~~~~~~~d~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~ 198 (214)
T 1gtv_A 148 ERSRGRAQRDPGRARDNYER--DAELQQRTGAVYAELAAQGWGGRWLVVGADV 198 (214)
T ss_dssp HHHHHHHHEBBEEEEEEEEE--EHHHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHcccccccccccccccc--cHHHHHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 999998652 232 4799999999999987543212456777664
No 25
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.53 E-value=3.8e-14 Score=131.60 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=90.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcCCCCCcH-HHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAY-TFQNYVFVTRV 296 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf-~~Ql~FLadR~ 296 (539)
+++++|+|+|++||||||+++.|+++ ++...+ ...+.||... .. .+ ..+..++.+...+.. .....|..+|.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~-l~~~~~~~~~~~~~~~~-~~---~g-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY-LKNNNVEVKHLYFPNRE-TG---IG-QIISKYLKMENSMSNETIHLLFSANRW 81 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCTT-SH---HH-HHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH-HHHcCCcEEEEecCCCC-Cc---HH-HHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999996 555432 2446676311 00 01 223344443322221 23344555554
Q ss_pred HHHHHhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHH
Q 009257 297 MQERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (539)
Q Consensus 297 kq~~e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRI 374 (539)
.++....+ ..+..+|+||++.+.. +|.... .+ + +. .|...+...++ .||++|||++|++++++|+
T Consensus 82 ~~~~~i~~~l~~~~~vi~D~~~~~~~-~~~~~~--~~-~---~~----~~l~~~~~~~~--~~d~vi~l~~~~e~~~~Rl 148 (212)
T 2wwf_A 82 EHMNEIKSLLLKGIWVVCDRYAYSGV-AYSSGA--LN-L---NK----TWCMNPDQGLI--KPDVVFYLNVPPNYAQNRS 148 (212)
T ss_dssp TTHHHHHHHHHHTCEEEEECCHHHHH-HHHHHH--SC-C---CH----HHHHGGGTTSB--CCSEEEEEECCTTGGGGST
T ss_pred HHHHHHHHHHhCCCEEEEecchhhHH-HHHHhc--cC-C---CH----HHHHHHhhCCC--CCCEEEEEeCCHHHHHHhh
Confidence 43211110 1235677777766542 332211 01 1 11 12211112232 6999999999999999999
Q ss_pred HHhccccccCCcHHHHHHHHHHHHHhh
Q 009257 375 MLRKRAEEGGVSLDYLRSLHEKHENWL 401 (539)
Q Consensus 375 kkRGRd~E~~i~leYLe~L~e~YEewl 401 (539)
.+|....+ ..+|+++++..|+.+.
T Consensus 149 ~~r~~r~~---~~~~~~~~~~~~~~~~ 172 (212)
T 2wwf_A 149 DYGEEIYE---KVETQKKIYETYKHFA 172 (212)
T ss_dssp TTTSSTTC---SHHHHHHHHHHGGGGT
T ss_pred ccCccccc---HHHHHHHHHHHHHHHh
Confidence 76522233 3678888888887764
No 26
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.45 E-value=7.9e-13 Score=119.98 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccch-hHhhhcC---CCCCcHH--HHH-HHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNI-LGAYYDA---PERYAYT--FQN-YVFV 293 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~l-Le~FY~D---p~r~Sf~--~Ql-~FLa 293 (539)
++|+|+|++||||||+++.|+++ ++..++ +.++ +.+.+. +..+ .+.++.. ...+... .++ .+++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~-l~~~g~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI-LDNQGINNKII--NYGDFM-----LATALKLGYAKDRDEMRKLSVEKQKKLQIDAA 73 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH-HHTTTCCEEEE--EHHHHH-----HHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHhcCceEEEE--ECChHH-----HHHHHhcccccchhhhhcCCHHHHHHHHHHHH
Confidence 58999999999999999999996 553221 2233 221100 0000 0111110 0123332 222 2345
Q ss_pred HHHHHHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHH
Q 009257 294 TRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKR 373 (539)
Q Consensus 294 dR~kq~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leR 373 (539)
+|+...... ..+..+|+||+. +-. | +.|++...+...+.. + .||++|||++|++++++|
T Consensus 74 ~~i~~~l~~--~~~~~vi~d~~~-~~~--~-----~~~~~~~~~~~~~~~--------~---~~~~vi~l~~~~~~~~~r 132 (194)
T 1nks_A 74 KGIAEEARA--GGEGYLFIDTHA-VIR--T-----PSGYLPGLPSYVITE--------I---NPSVIFLLEADPKIILSR 132 (194)
T ss_dssp HHHHHHHHH--TCSSEEEEEECS-EEE--E-----TTEEEESSCHHHHHH--------H---CCSEEEEEECCHHHHHHH
T ss_pred HHHHHHhhc--cCCCEEEECCch-hhc--c-----ccccccCCCHHHHHh--------c---CCCEEEEEeCCHHHHHHH
Confidence 554433210 134678888861 111 1 112222222222111 1 479999999999999966
Q ss_pred -HHH--hcc-ccccCCcHHHHHHHHHHHHHhhccC
Q 009257 374 -MML--RKR-AEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 374 -Ikk--RGR-d~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
+.. |++ +.+.....+++++++..|+++...+
T Consensus 133 r~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
T 1nks_A 133 QKRDTTRNRNDYSDESVILETINFARYAATASAVL 167 (194)
T ss_dssp HHHCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccCCCCccCHHHHHHHHHHHHHHHHHHHHh
Confidence 878 887 4332235688899999999887543
No 27
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=99.41 E-value=1.3e-12 Score=133.42 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=100.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~k 297 (539)
..+++|+|||.+||||||+++.|.+. ++..++ +..+.+|++. ... . .| + .|
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~-Ldprg~~V~~~~~Pt~e---------E~~--------~-~y------l-~R-- 135 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTAN-MNPRSARVVALTKPTET---------ERG--------Q-WY------F-QR-- 135 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT-SCTTTEEEEECCSCCHH---------HHT--------S-CT------T-HH--
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHH-hcccCCeEEEeCCcChH---------HHh--------c-hH------H-HH--
Confidence 35899999999999999999999986 777654 3456777432 111 1 11 1 22
Q ss_pred HHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHH-HHhhHHH---HHhcCCCCCCcEEEEEeCCHHHHHHH
Q 009257 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISI-YDSWFDP---VVSVLPGLIPDGFIYLRASPDTCHKR 373 (539)
Q Consensus 298 q~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~i-Y~~l~~~---l~~~Lp~l~PDLIIYLdaspE~~leR 373 (539)
+....+..+.++|+|||+||+. ++... .|.++..+|.. |..+.++ +.. -+ .|++.|||++|+++.++|
T Consensus 136 -~~~~LP~~G~IvIfDRswYs~v-~~~rv---~g~~~~~e~~~~~~~In~FE~~L~~-~G--~~~lKf~L~Is~eeq~kR 207 (304)
T 3czq_A 136 -YVATFPTAGEFVLFDRSWYNRA-GVEPV---MGFCTPDQYEQFLKEAPRFEEMIAN-EG--IHLFKFWINIGREMQLKR 207 (304)
T ss_dssp -HHTTCCCTTCEEEEEECGGGGT-THHHH---HTSSCHHHHHHHHHHHHHHHHHHHH-HT--CEEEEEEEECCHHHHHHH
T ss_pred -HHHhcccCCeEEEEECCcchHH-HHHHH---hcCCCHHHHHHHHHHHHHHHHHHHh-CC--CeeEEEEEECCHHHHHHH
Confidence 2233455678999999999985 44332 36667766654 3344332 222 22 699999999999999999
Q ss_pred HHHhcccccc--------CCcHHHHHHHHHHHHHhhcc
Q 009257 374 MMLRKRAEEG--------GVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 374 IkkRGRd~E~--------~i~leYLe~L~e~YEewl~~ 403 (539)
+..|..+... -...+++..+.+.|++.+..
T Consensus 208 ~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~ 245 (304)
T 3czq_A 208 FHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKE 245 (304)
T ss_dssp HHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred HHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887432111 12567888888889888754
No 28
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.35 E-value=5.7e-11 Score=107.87 Aligned_cols=130 Identities=13% Similarity=0.160 Sum_probs=68.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceE---Eee---CCccccccCCCCccchhHhhhcCCCCCcHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVE---IVP---EPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVF 292 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~E---vV~---EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FL 292 (539)
|++++|+|+|++||||||+++.|++. ++... +. ++. ++.+. .-...+..++.+............+
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~~-~~~~~-i~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~l 72 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVEK-YGYTH-LSAGELLRDERKNPDS------QYGELIEKYIKEGKIVPVEITISLL 72 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHH-HCCEE-EEHHHHHHHHHHCTTS------TTHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-hCCeE-EeHHHHHHHHHhccCC------hHHHHHHHHHHCCCcCCHHHHHHHH
Confidence 67899999999999999999999986 56431 10 010 11000 0012223333322111111111122
Q ss_pred HHHHHHHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHH
Q 009257 293 VTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHK 372 (539)
Q Consensus 293 adR~kq~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~le 372 (539)
..++....... ..+..+|+|+.+.+.. .|..|...+.. . ..||++|||++|++++++
T Consensus 73 ~~~~~~~~~~~-~~~~~vi~dg~~~~~~-------------------~~~~~~~~~~~-~--~~~~~~i~l~~~~e~~~~ 129 (196)
T 1tev_A 73 KREMDQTMAAN-AQKNKFLIDGFPRNQD-------------------NLQGWNKTMDG-K--ADVSFVLFFDCNNEICIE 129 (196)
T ss_dssp HHHHHHHHHHC-TTCCEEEEESCCCSHH-------------------HHHHHHHHHTT-T--CEEEEEEEEECCHHHHHH
T ss_pred HHHHHhhhccc-cCCCeEEEeCCCCCHH-------------------HHHHHHHHhcc-c--CCCCEEEEEECCHHHHHH
Confidence 23333222222 2245777787775431 11122222221 1 268999999999999999
Q ss_pred HHHHhcc
Q 009257 373 RMMLRKR 379 (539)
Q Consensus 373 RIkkRGR 379 (539)
|+.+|+.
T Consensus 130 R~~~R~~ 136 (196)
T 1tev_A 130 RCLERGK 136 (196)
T ss_dssp HHHHHHH
T ss_pred HHHcccc
Confidence 9998863
No 29
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.31 E-value=1.6e-11 Score=112.08 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+++++|+|+|++||||||+++.|++. ++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~-l~~~ 32 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG-LRLP 32 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH-HTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-cCCe
Confidence 35789999999999999999999986 5643
No 30
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.28 E-value=1.3e-10 Score=113.56 Aligned_cols=152 Identities=15% Similarity=0.188 Sum_probs=81.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEE-eeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEI-VPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~Ev-V~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~kq 298 (539)
++++|+|+|++||||||+++.|++. +...+...+ +. .+ .+...+.. |....+.++.......
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~-L~~~g~~~i~~~--~D----------~~~~~l~~----~~~~~e~~~~~~~~~~ 65 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI-LSKNNIDVIVLG--SD----------LIRESFPV----WKEKYEEFIKKSTYRL 65 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEC--TH----------HHHTTSSS----CCGGGHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH-HHhCCCEEEEEC--ch----------HHHHHHhh----hhHHHHHHHHHHHHHH
Confidence 3579999999999999999999986 332221112 11 01 12211111 2211222222111122
Q ss_pred HHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 009257 299 ERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 299 ~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leRIkkRG 378 (539)
...... . ..+|+|++.+...+ ...|...+. ..+ .|+++|||++|+++|++|+.+|+
T Consensus 66 i~~~l~-~-~~vIiD~~~~~~~~-------------------~~~l~~~a~-~~~--~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 66 IDSALK-N-YWVIVDDTNYYNSM-------------------RRDLINIAK-KYN--KNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp HHHHHT-T-SEEEECSCCCSHHH-------------------HHHHHHHHH-HTT--CEEEEEEEECCHHHHHHHHHHTT
T ss_pred HHHHhh-C-CEEEEeCCcccHHH-------------------HHHHHHHHH-HcC--CCEEEEEEeCCHHHHHHHHHhCC
Confidence 222222 2 56788875543210 011222221 222 68999999999999999999988
Q ss_pred cccccCCcHHHHHHHHHHHHHhhccCC-CCCeEEEecCC
Q 009257 379 RAEEGGVSLDYLRSLHEKHENWLFPFE-SGNHGVLAVSK 416 (539)
Q Consensus 379 Rd~E~~i~leYLe~L~e~YEewl~~~~-~~~~~VIdad~ 416 (539)
+. .+.++++.+.+.|+.....+. .....+||++.
T Consensus 122 ~~----~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~~~ 156 (260)
T 3a4m_A 122 EK----IPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTK 156 (260)
T ss_dssp CS----SCHHHHHHHHHHCCCTTSSCGGGCCSEEEETTS
T ss_pred CC----CCHHHHHHHHHHhcCccccCCCCCCEEEEeCCC
Confidence 53 356788888777765543321 12344455443
No 31
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.20 E-value=1.9e-10 Score=104.39 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=35.6
Q ss_pred CCcEEEEEeCCHHHHHH-HHHH--hccccccCCcHHHHHHHHHHHHHhhcc
Q 009257 356 IPDGFIYLRASPDTCHK-RMML--RKRAEEGGVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 356 ~PDLIIYLdaspE~~le-RIkk--RGRd~E~~i~leYLe~L~e~YEewl~~ 403 (539)
.||++|||++|++++++ |+.. |+|+.+.....++...++..|...+..
T Consensus 114 ~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~~~~~ 164 (192)
T 1kht_A 114 NPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGV 164 (192)
T ss_dssp CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999996 9988 887655433455666777777665543
No 32
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.19 E-value=5.8e-10 Score=101.88 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
++++|+|+|++||||||+++.|++. ++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~-l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK-YGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH-HCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 5679999999999999999999986 564
No 33
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.19 E-value=3.6e-10 Score=104.96 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=27.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
..++|+|+|+|++||||||+++.|++. ++..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~-l~~~ 47 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEK-LGIP 47 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH-HTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 467899999999999999999999986 5644
No 34
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.18 E-value=1.6e-10 Score=125.04 Aligned_cols=150 Identities=11% Similarity=0.040 Sum_probs=96.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~k 297 (539)
..+++|+|||.|||||+|+++.|.+. ++-.++ +..+.+|.+. ... . .| + .|+
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~-l~prg~~V~a~~~Pt~~---------E~~--------~-~y------l-~R~- 93 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEW-MDPRLIEVQSFLRPSDE---------ELE--------R-PP------Q-WRF- 93 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH-SCGGGEEEEECSSCCHH---------HHT--------S-CT------T-HHH-
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHh-cCccCCeEEEeCCCChh---------hcc--------C-Ch------h-hhH-
Confidence 56899999999999999999999986 676653 2344566422 111 1 11 1 122
Q ss_pred HHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHH---HhcCCCCCCcEEEEEeCCHHHHHHHH
Q 009257 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPV---VSVLPGLIPDGFIYLRASPDTCHKRM 374 (539)
Q Consensus 298 q~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l---~~~Lp~l~PDLIIYLdaspE~~leRI 374 (539)
....+..+.++|+|||.||+. ++.. ..|.+++.+|+.+..+...+ ..+-+ .|++.|||++|+++..+|+
T Consensus 94 --~~~lP~~G~IvIfdRSwYs~~-~v~r---v~g~~~~~~~~~~~~~i~~FE~~L~~~g--~~i~KffL~is~eeq~kRl 165 (500)
T 3czp_A 94 --WRRLPPKGRTGIFFGNWYSQM-LYAR---VEGHIKEAKLDQAIDAAERFERMLCDEG--ALLFKFWFHLSKKQLKERL 165 (500)
T ss_dssp --HHHCCCTTCEEEEESCHHHHH-HHHH---HTTSSCHHHHHHHHHHHHHHHHHHHHTT--CEEEEEEEECCHHHHHHCC
T ss_pred --HHhCCCCCeEEEEeCchhhHH-HHHH---HhcCCCHHHHHHHHHHHHHHHHHHhcCC--CeEEEEEEECCHHHHHHHH
Confidence 122455678999999999985 3332 35777777766544333222 22223 7899999999999999999
Q ss_pred HHhcccccc--------CCcHHHHHHHHHHHHHhhcc
Q 009257 375 MLRKRAEEG--------GVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 375 kkRGRd~E~--------~i~leYLe~L~e~YEewl~~ 403 (539)
..|..+... -...+++......|+..+..
T Consensus 166 ~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~ 202 (500)
T 3czp_A 166 KALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRR 202 (500)
T ss_dssp -------------CSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHh
Confidence 988653221 23678888888888888754
No 35
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.15 E-value=2e-09 Score=97.41 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
++++|+|+|++||||||+++.|++. ++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~-l~~ 32 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD-FGW 32 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH-HCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 4579999999999999999999986 564
No 36
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.14 E-value=1.8e-10 Score=124.65 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=100.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCc-eEEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~-~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~k 297 (539)
..+++|+|||.|||||+|+++.|.+. ++-.++ +..+.+|.+. ... . .|. .|+
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~-ldprg~~V~~~~~Pt~~---------E~~--------~-~yl-------~R~- 350 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDA-LDPRQYHIVPIAAPTEE---------ERA--------Q-PYL-------WRF- 350 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTT-SCGGGCEEEECCSCCHH---------HHT--------S-CTT-------HHH-
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHh-cCccCCeEEEeCCCChh---------hhc--------c-hHH-------HHH-
Confidence 47899999999999999999999985 666653 2345666432 110 1 111 222
Q ss_pred HHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHH-HHhhHHH---HHhcCCCCCCcEEEEEeCCHHHHHHH
Q 009257 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISI-YDSWFDP---VVSVLPGLIPDGFIYLRASPDTCHKR 373 (539)
Q Consensus 298 q~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~i-Y~~l~~~---l~~~Lp~l~PDLIIYLdaspE~~leR 373 (539)
....+..+.++|+|||.|++. ++.. ..|.+++.+|.. |..+.++ +.. .+ .|++.|||++|+++..+|
T Consensus 351 --~~~lP~~G~i~IfDRswY~~~-~v~r---v~g~~~~~~~~~~~~~i~~FE~~L~~-~g--~~i~Kf~L~is~eeQ~~R 421 (500)
T 3czp_A 351 --WRHIPARRQFTIFDRSWYGRV-LVER---IEGFCAPADWLRAYGEINDFEEQLSE-YG--IIVVKFWLAIDKQTQMER 421 (500)
T ss_dssp --HTTCCCTTCEEEEESCGGGGG-THHH---HHTSSCHHHHHHHHHHHHHHHHHHHH-HT--EEEEEEEEECCHHHHHHH
T ss_pred --HHhCCCCCeEEEEeCcchhhH-HHHH---HhcCCCHHHHHHHHHHHHHHHHHHhh-CC--CeEEEEEEECCHHHHHHH
Confidence 222455678999999999985 3333 247778887764 4444443 222 23 689999999999999999
Q ss_pred HHHhcccccc--------CCcHHHHHHHHHHHHHhhcc
Q 009257 374 MMLRKRAEEG--------GVSLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 374 IkkRGRd~E~--------~i~leYLe~L~e~YEewl~~ 403 (539)
+..|..+... -...+++......|++.+..
T Consensus 422 ~~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~ 459 (500)
T 3czp_A 422 FKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDR 459 (500)
T ss_dssp HHHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9998643211 23567777788888887754
No 37
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.13 E-value=6.1e-10 Score=101.99 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
++++|+|+|++||||||+++.|++. ++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~-l~~ 38 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK-YGF 38 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH-HTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 3579999999999999999999996 564
No 38
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.12 E-value=5.3e-10 Score=103.95 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.++|+|.|++||||||+++.|++. ++..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~-lg~~ 45 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEA-CGYP 45 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHH-HTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-hCCE
Confidence 3569999999999999999999986 5543
No 39
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.10 E-value=1e-09 Score=96.96 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRA 380 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd 380 (539)
.|+.+|||++|++++++|+..|++.
T Consensus 101 ~~~~~i~l~~~~~~~~~R~~~R~~~ 125 (179)
T 3lw7_A 101 DSVYIVAVHSPPKIRYKRMIERLRS 125 (179)
T ss_dssp SCEEEEEEECCHHHHHHHHHTCC--
T ss_pred CCcEEEEEECCHHHHHHHHHhccCC
Confidence 5799999999999999999999875
No 40
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.09 E-value=9.6e-10 Score=104.84 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
|+|+|+|++||||||+++.|++. ++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~-lg~ 26 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK-YSL 26 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH-HTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 68999999999999999999986 554
No 41
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.05 E-value=2.2e-09 Score=101.58 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++|+|+|+|++||||||+++.|++. ++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~-l~~~ 32 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE-YGLA 32 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH-HCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH-hCce
Confidence 4689999999999999999999996 5643
No 42
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.02 E-value=4.7e-09 Score=98.97 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
++|+|+|+|++||||||+++.|++. ++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~-l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER-FHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH-HCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-cCc
Confidence 5689999999999999999999996 564
No 43
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.02 E-value=5.3e-09 Score=98.77 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
++++|+|+|++||||||+++.|++. ++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~-l~~ 31 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK-YQL 31 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH-HCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 4578999999999999999999986 564
No 44
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.01 E-value=8.1e-09 Score=98.72 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++++|+|+|++||||||+++.|+++ ++.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~-l~~ 42 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN-FCV 42 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH-HTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 45689999999999999999999996 564
No 45
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.00 E-value=3.7e-09 Score=96.97 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=27.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 216 PAPKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 216 ~~~~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
...+++++|+|+|.+||||||+++.|++. ++.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~-l~~ 39 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADL-LQK 39 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHH-HHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHH-HHh
Confidence 34578899999999999999999999986 443
No 46
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.00 E-value=6.1e-09 Score=97.34 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|+|++||||||+++.|++. ++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~-~~~~ 27 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK-YEIP 27 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-HCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 67999999999999999999886 5643
No 47
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.99 E-value=2e-08 Score=92.98 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
..+.++|+|+|++||||||+++.|++. ++.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~-~g~ 41 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKD-YSF 41 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH-SSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH-cCc
Confidence 345679999999999999999999986 554
No 48
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.97 E-value=5.7e-09 Score=97.75 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|+|++||||||+++.|++. ++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~-~~~~ 27 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK-YGIP 27 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-SSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 67999999999999999999886 5543
No 49
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.96 E-value=1.2e-08 Score=92.84 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
+++++|+|+|++||||||+++.|++. ++.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~-l~~ 30 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE-LGF 30 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH-HTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 36789999999999999999999986 553
No 50
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.96 E-value=9e-09 Score=92.36 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=77.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccCCceEEeeCCccccccCCCCccchhHhhhcCCC----CCcHHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE----RYAYTFQNYVFVTRV 296 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~----r~Sf~~Ql~FLadR~ 296 (539)
+++|+|.|++||||||+++.|++..++ +.++. .+ .+.......+. .+....+..+ ....
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~----~~~i~--~d----------~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~ 64 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG----FYNIN--RD----------DYRQSIMAHEERDEYKYTKKKEGIV-TGMQ 64 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT----EEEEC--HH----------HHHHHHTTSCCGGGCCCCHHHHHHH-HHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC----cEEec--HH----------HHHHHhhCCCccchhhhchhhhhHH-HHHH
Confidence 478999999999999999999982133 22331 01 12222222111 1222222211 1111
Q ss_pred -HHHHHhcC--CCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCCCCCCcEEEEEeCCHHHHHHH
Q 009257 297 -MQERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKR 373 (539)
Q Consensus 297 -kq~~e~~~--~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp~l~PDLIIYLdaspE~~leR 373 (539)
......+. ..+..+|+|....+.. +. ..+.++... .. .+..+|||++|+++|++|
T Consensus 65 ~~~~~~~l~~~~~g~~vi~d~~~~~~~--~~--------------~~l~~~~~~----~~--~~~~~i~l~~~~~~~~~R 122 (181)
T 1ly1_A 65 FDTAKSILYGGDSVKGVIISDTNLNPE--RR--------------LAWETFAKE----YG--WKVEHKVFDVPWTELVKR 122 (181)
T ss_dssp HHHHHHHHTSCSSCCEEEECSCCCSHH--HH--------------HHHHHHHHH----HT--CEEEEEECCCCHHHHHHH
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCHH--HH--------------HHHHHHHHH----cC--CCEEEEEEeCCHHHHHHH
Confidence 11222221 2346778887766432 11 111122111 11 356899999999999999
Q ss_pred HHHhccccccCCcHHHHHHHHHHHHHhh
Q 009257 374 MMLRKRAEEGGVSLDYLRSLHEKHENWL 401 (539)
Q Consensus 374 IkkRGRd~E~~i~leYLe~L~e~YEewl 401 (539)
+.+|+.. ..+.+++++..+.|+...
T Consensus 123 ~~~R~~~---~~~~~~i~~~~~~~~~~~ 147 (181)
T 1ly1_A 123 NSKRGTK---AVPIDVLRSMYKSMREYL 147 (181)
T ss_dssp HTTCGGG---CCCHHHHHHHHHHHHHHH
T ss_pred HhccccC---CCCHHHHHHHHHHhhccC
Confidence 9988752 346788888888887763
No 51
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.95 E-value=5.5e-09 Score=94.61 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|++++|+|+|++||||||+++.|++. ++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~-l~~~ 32 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHER-LPGS 32 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHH-STTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh-cCCC
Confidence 57889999999999999999999986 6654
No 52
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.91 E-value=3.2e-08 Score=95.88 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++|+|+|+|++||||||+++.|+++ ++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~-~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS-HCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH-HCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 36789999999999999999999986 554
No 53
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.88 E-value=2e-08 Score=94.50 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|+|++||||||+++.|++. ++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~-~g~~ 27 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK-YGIP 27 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH-HCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 57999999999999999999986 5643
No 54
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.82 E-value=1.4e-08 Score=94.65 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
++.+|+|.|++||||||+++.|++. ++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~-~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE-TG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH-HC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh-hC
Confidence 4679999999999999999999985 44
No 55
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=7.8e-08 Score=89.58 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++++|+|.|++||||||+++.|++. ++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~-l~~~ 52 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK-LNVP 52 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH-HTCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH-cCCC
Confidence 4569999999999999999999986 5643
No 56
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.76 E-value=5.6e-08 Score=91.37 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++++|+|+|++||||||+++.|++.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999986
No 57
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.75 E-value=1.7e-08 Score=95.72 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++++|+|+|++||||||+++.|++. ++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~-l~~ 33 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH-FEL 33 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH-SSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 35689999999999999999999986 554
No 58
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.75 E-value=2.2e-08 Score=89.61 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.|+|+|++||||||+++.|++. ++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~-l~~~ 27 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS-LNIP 27 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH-HTCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 68999999999999999999996 5643
No 59
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.74 E-value=1.5e-07 Score=91.31 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=26.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
-.++++|.|-|++||||||+++.|+++ +++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~-~g~~ 56 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK-FHFN 56 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH-HCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH-HCCc
Confidence 357789999999999999999999997 5643
No 60
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.72 E-value=6.3e-07 Score=80.96 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
++++.+|+|.|++||||||+++.|++. ++
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~-~g 33 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQ-LH 33 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHH-HT
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh-hC
Confidence 467889999999999999999999985 45
No 61
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.72 E-value=1.2e-07 Score=88.43 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=32.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHH-HHHHHHHHHhh
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYL-RSLHEKHENWL 401 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYL-e~L~e~YEewl 401 (539)
.||.+|||+++++++++|+.+|+++.|. . .+++ ..+...|...+
T Consensus 129 ~~d~~i~l~~~~~~~~~R~~~R~~~~e~-~-~~~~~~~~~~~~~~~~ 173 (207)
T 2qt1_A 129 IWNRSYFLTIPYEECKRRRSTRVYQPPD-S-PGYFDGHVWPMYLKYR 173 (207)
T ss_dssp TCSEEEEEECCHHHHHHHHHHSCCSSCC-C-TTHHHHTHHHHHHHHH
T ss_pred hcCeeEEEECCHHHHHHHHHHcCCCccc-h-HHHHHHHHhHHHHHHH
Confidence 5799999999999999999888865543 2 2344 36666666544
No 62
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.69 E-value=8.7e-08 Score=87.20 Aligned_cols=49 Identities=12% Similarity=-0.040 Sum_probs=33.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHhhccC
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF 404 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEewl~~~ 404 (539)
.+|.+|||++|++++++|+.+|++..+........+.+...|+++...+
T Consensus 96 ~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y 144 (180)
T 3iij_A 96 WFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASY 144 (180)
T ss_dssp GCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred cCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3789999999999999999999864332112223355566666655433
No 63
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.65 E-value=2.4e-07 Score=94.07 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=94.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccCCce-EEeeCCccccccCCCCccchhHhhhcCCCCCcHHHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~-EvV~EPi~~W~~i~~~g~~lLe~FY~Dp~r~Sf~~Ql~FLadR~k 297 (539)
..+++|+|||.+||||.++++.|.+. ++-+++- ..+..|.+. + ....|. .|+
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~-ldPRg~~V~a~~~Pt~e------------E------~~~~yl-------wR~- 125 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGA-MDPQGVQLTAFKAPTDE------------E------KSHDFL-------WRI- 125 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHH-SCGGGEEEEECCSCCHH------------H------HTSCTT-------HHH-
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHh-cCcCceEEEECCCCChh------------h------hcCCHH-------HHH-
Confidence 46789999999999999999999986 7766532 223444211 1 011111 132
Q ss_pred HHHHhcCCCCCeeeecceEeechHHHHHHHHHhcccCchhHHHHHhhHHHHHhcCC-CCCCcEEEEEeCCHHHHHHHHHH
Q 009257 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYLRASPDTCHKRMML 376 (539)
Q Consensus 298 q~~e~~~~~~~~VI~DRSV~SDryIFA~~lye~G~lse~E~~iY~~l~~~l~~~Lp-~l~PDLIIYLdaspE~~leRIkk 376 (539)
...++..+.++|+|||.|++.. ..+ -.|..++.+|.........+...|- .-..-+-+||++|.++..+|+.+
T Consensus 126 --~~~lP~~G~I~IFdRSwY~~vl-ver---V~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~ 199 (289)
T 3rhf_A 126 --EKQVPAAGMVGVFDRSQYEDVL-IHR---VHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIA 199 (289)
T ss_dssp --HTTCCCTTCEEEEESCGGGGGT-HHH---HTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHH
T ss_pred --HHhCCCCCeEEEEeCchhhhHh-HHH---HhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHH
Confidence 2345667799999999999952 222 3577788877654333223222221 01345679999999999999999
Q ss_pred hccccccC--C------cHHHHHHHHHHHHHhhcc
Q 009257 377 RKRAEEGG--V------SLDYLRSLHEKHENWLFP 403 (539)
Q Consensus 377 RGRd~E~~--i------~leYLe~L~e~YEewl~~ 403 (539)
|..+-.+. + ..+.+......|++.+..
T Consensus 200 R~~dP~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~ 234 (289)
T 3rhf_A 200 RLDDPSKHWKYSRGDLAERAYWDDYMDAYSVAFEK 234 (289)
T ss_dssp HHHCGGGGGGCCHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HhcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86554431 1 233445555666665543
No 64
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.64 E-value=8.9e-07 Score=86.86 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=30.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHh
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENW 400 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E~~i~leYLe~L~e~YEew 400 (539)
.++.+|||++|++++++|+.+|+.. ..+.+-+++..+.|+..
T Consensus 105 ~~~~~i~l~~~~e~~~~R~~~R~~~---~~~~e~i~~~~~~~~~~ 146 (301)
T 1ltq_A 105 WKVEHKVFDVPWTELVKRNSKRGTK---AVPIDVLRSMYKSMREY 146 (301)
T ss_dssp CEEEEEECCCCHHHHHHHHHHCGGG---CCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCHHHHHHHHHhccCC---CCCHHHHHHHHHHHhcc
Confidence 3568999999999999999998742 23455555555556554
No 65
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.64 E-value=2.8e-07 Score=83.86 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++.|+|.|++||||||+++.|++. ++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~-l~~~ 32 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL-TKRI 32 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH-HCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 458999999999999999999986 6644
No 66
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.59 E-value=6.5e-07 Score=85.77 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|+|+|-|++||||+|+++.|+++ +++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~-~g~~ 27 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE-KGFV 27 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-HCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HCCe
Confidence 78999999999999999999997 5643
No 67
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.56 E-value=7e-07 Score=83.75 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++++|+|+|++||||||+++.|++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 68
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.54 E-value=3e-07 Score=88.92 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+.++|+|.|++||||||+++.|++. ++..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~-lg~~ 49 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL-LGQN 49 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH-TTGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH-hhhh
Confidence 45679999999999999999999986 5643
No 69
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.52 E-value=2.7e-07 Score=83.03 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
..|+|+|.+||||||+++.|++. ++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~-lg~~ 34 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA-LKLE 34 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH-HTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 38999999999999999999996 6754
No 70
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.51 E-value=3.7e-07 Score=81.78 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
++|+|+|++||||||+++.|++. ++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~-lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA-LGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH-HTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 58999999999999999999996 564
No 71
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.49 E-value=3e-07 Score=101.97 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETL 246 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L 246 (539)
+++++|+|+|.+||||||+++.|++. +
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~-L 76 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEY-L 76 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH-H
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH-H
Confidence 57899999999999999999999996 5
No 72
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.45 E-value=3e-07 Score=83.72 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+++|+|.|.+||||||+++.|++. ++..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~-lg~~ 29 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKA-LGVG 29 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHH-HTCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 357999999999999999999996 6654
No 73
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.44 E-value=3e-07 Score=83.45 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.|+|.|+.||||||+++.|++. ++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~-l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD-LDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH-HTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHH-cCC
Confidence 6999999999999999999986 564
No 74
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.43 E-value=1.1e-06 Score=80.88 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++++.|+|.|++||||||+++.|++.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999999985
No 75
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.43 E-value=3.3e-06 Score=79.02 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
+++|+|.|++||||||+++.|++. ++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~-~g 30 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA-LQ 30 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH-HT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-hC
Confidence 478999999999999999999985 45
No 76
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.38 E-value=1.5e-06 Score=77.92 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
+++|+|.|++||||||+++.|++. ++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~-l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ-LN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH-TT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-hC
Confidence 468999999999999999999985 55
No 77
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.38 E-value=2.1e-06 Score=78.15 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++++|+|+|++||||||+++.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999985
No 78
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.35 E-value=4.5e-06 Score=82.85 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++++|+|+|++||||||+++.|++ ++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~--lg~ 100 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN--LGA 100 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH--HTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--CCC
Confidence 4568999999999999999999995 454
No 79
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.33 E-value=1.2e-05 Score=74.71 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHh-----ccccccCCcHHHHHHHHHHHHHhhccCCCCCeEEEecCCCCcccCCCCCcccc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLR-----KRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIR 430 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkR-----GRd~E~~i~leYLe~L~e~YEewl~~~~~~~~~VIdad~~~~~~d~~~~pe~~ 430 (539)
..|.+|||+++.++.+.|+.+| |+..+. +.-.|..++...|+.|+.++..
T Consensus 124 ~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~-~~~~~~~~~~~~~~~~~~~~~~------------------------ 178 (211)
T 3asz_A 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEG-VVAQYLEQVKPMHLHFVEPTKR------------------------ 178 (211)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHH-HHHHHHHTHHHHHHHTTGGGGG------------------------
T ss_pred hcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHhhhhhHHHhcccchh------------------------
Confidence 4699999999999987775544 443332 3456778888889988866430
Q ss_pred cceeeecCccccccccCCceEEEcCCCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 009257 431 DRVFYLDGPHMHSSIQKVPALVLDCEPNIDFSRDIDLKRQYARQVAEFFEFVK 483 (539)
Q Consensus 431 d~V~~~~~~h~~~~~~~iPvLviD~d~~~DF~~d~~~~e~i~~~I~~fl~~v~ 483 (539)
...+++.|.. .++.+.+.+.++|.++++.++
T Consensus 179 ----------------~aD~ii~~~~------~~~~~~~~~~~~i~~~~~~~~ 209 (211)
T 3asz_A 179 ----------------YADVIVPRGG------QNPVALEMLAAKALARLARMG 209 (211)
T ss_dssp ----------------GCSEEEESTT------SCHHHHHHHHHHHTHHHHC--
T ss_pred ----------------cCeEEEeCCC------cchHHHHHHHHHHHHHHHhhc
Confidence 1233333332 267889999999998886543
No 80
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.32 E-value=2.3e-06 Score=77.07 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
|++++|+|.|+.||||||+++.|++. ++.
T Consensus 1 m~~~~i~l~G~~GsGKST~a~~La~~-l~~ 29 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQSV-LPE 29 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH-SSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 56789999999999999999999996 554
No 81
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.32 E-value=2.6e-06 Score=84.07 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
++..|+|.|..||||||+++.|++. ++.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La~~-lg~ 74 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMARS-LGY 74 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHHHH-HTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 3678999999999999999999986 564
No 82
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.31 E-value=2.6e-06 Score=82.86 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
+++++|+|.|+.||||||++++|++. +++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~-Lg~ 53 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES-LNW 53 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH-TTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 45789999999999999999999986 564
No 83
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.24 E-value=1.8e-05 Score=74.99 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|+.++|+|.|..||||||+++.|++. |+..
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~-lg~~ 33 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEH-YNIP 33 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH-TTCC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHH-hCcC
Confidence 67789999999999999999999996 7765
No 84
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.23 E-value=2.9e-06 Score=78.46 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKR 379 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGR 379 (539)
.+|.+|||++|++++++|+.+|+.
T Consensus 123 ~~~~~i~l~~~~e~~~~Rl~~R~~ 146 (204)
T 2if2_A 123 NYDKLIVVYAPYEVCKERAIKRGM 146 (204)
T ss_dssp GSSEEEEECCCHHHHHHHHHHTCC
T ss_pred hCCEEEEEECCHHHHHHHHHHcCC
Confidence 479999999999999999998853
No 85
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.23 E-value=1.8e-08 Score=105.20 Aligned_cols=50 Identities=14% Similarity=0.010 Sum_probs=43.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccC-----CcHHHHHHHHHHHHHhhccCC
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGG-----VSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRGRd~E~~-----i~leYLe~L~e~YEewl~~~~ 405 (539)
.||++|||++|++++++||.+||+..+.. ...+|++.++..|+.|+..+.
T Consensus 300 ~pDLliyLd~~~~~l~~RL~~Rg~t~~~~l~~~~~~~dy~~~l~~~~~~w~~~l~ 354 (377)
T 1svm_A 300 KDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLD 354 (377)
T ss_dssp CHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHcCccHHHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999987742 467899999999999987653
No 86
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.19 E-value=1.3e-05 Score=74.33 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++|+|.|++||||||+++.|++ ++..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~--lg~~ 28 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD--LGVP 28 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT--TTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHH--CCCc
Confidence 5899999999999999999986 4543
No 87
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.15 E-value=2.6e-06 Score=83.68 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.-|..+|.|++||||||+++.|++. ++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~-~g~~ 35 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK-FGIP 35 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH-HTCC
T ss_pred cccceeeECCCCCCHHHHHHHHHHH-hCCC
Confidence 3578899999999999999999996 5654
No 88
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.14 E-value=2.8e-05 Score=74.57 Aligned_cols=29 Identities=34% Similarity=0.415 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++++|+|.|++||||||+++.|++. ++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~-lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN-FGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH-HCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 5689999999999999999999986 5643
No 89
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.13 E-value=4.4e-05 Score=74.06 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++.++|+|.|..||||||+++.|++. ++..
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~-lg~~ 41 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEE-LGIH 41 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHH-HTCE
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHH-cCCc
Confidence 45789999999999999999999996 6654
No 90
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.11 E-value=7.1e-05 Score=68.64 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
+|+|.|.+||||||+++.|++. ++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~-lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA-LGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-HTC
T ss_pred EEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 8999999999999999999986 564
No 91
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.11 E-value=4e-05 Score=70.33 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+|+|.|++||||||+++.|+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5789999999999999999999985
No 92
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.06 E-value=1.4e-05 Score=77.52 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.-|.+.|.|||||||+++.|++ +++.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~--~g~~ 35 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA--RGAS 35 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH--TTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHH--CCCc
Confidence 4689999999999999999997 4654
No 93
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.05 E-value=6.5e-05 Score=70.04 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
|++++|+|.|.+||||||+++.|++. ++.
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~~-~g~ 29 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVASE-LSM 29 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHHH-TTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 56789999999999999999999985 554
No 94
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.02 E-value=0.00011 Score=68.58 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++++|+|.|++||||||+++.|++.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5779999999999999999999986
No 95
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.97 E-value=2.8e-05 Score=73.51 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
..++|+|.|.+||||||+++.|++. +++.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~-lg~~ 39 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK-YGAH 39 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH-HCCE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh-cCCE
Confidence 4689999999999999999999985 5643
No 96
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.86 E-value=1.7e-05 Score=86.38 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
++++|.|+|.+||||||+++.|++. ++.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~-L~~ 398 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATM-LQA 398 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH-HHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHH-hhh
Confidence 4789999999999999999999986 453
No 97
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.84 E-value=2.7e-05 Score=77.89 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHh-----ccccccCCcHHHHHHHHHHHHHhhccCC
Q 009257 356 IPDGFIYLRASPDTCHKRMMLR-----KRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkR-----GRd~E~~i~leYLe~L~e~YEewl~~~~ 405 (539)
.+|++|||+++.+++++|..+| |++.|+ +...|..+ ...|+.|+.+..
T Consensus 147 ~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~-v~~~i~~r-~~~~~r~i~p~~ 199 (290)
T 1a7j_A 147 LADLKIGVVPVINLEWIQKIHRDRATRGYTTEA-VTDVILRR-MHAYVHCIVPQF 199 (290)
T ss_dssp GCSEEEEEEECHHHHHHHHHHHTSSSCCSCCCC-HHHHHHHH-HHHHHHHTGGGG
T ss_pred hCCEEEEEECCHHHHHHHHhhhhhhhcCCChHH-HHHHHHHh-CccHHHhhhhhh
Confidence 4699999999999999997765 555553 44566677 678888776653
No 98
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.80 E-value=0.00053 Score=63.57 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|+.||||||+++.|++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999986
No 99
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.78 E-value=0.00025 Score=70.59 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+++++|+|.|++||||||+++.|++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999986
No 100
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.77 E-value=0.00029 Score=65.87 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|+.|||||||++.|+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999985
No 101
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.77 E-value=0.00015 Score=71.12 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
+++++|+|.|+.||||||+++.|++. ++.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~-lg~ 35 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARA-LGA 35 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHH-HTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 46789999999999999999999986 553
No 102
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.75 E-value=0.00014 Score=76.12 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|++||||||+++.|++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999999875
No 103
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.72 E-value=0.00049 Score=65.56 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++++|+|.|.+||||||+++.|++. ++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~-lg~ 42 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD-FGF 42 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH-HCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 56789999999999999999999986 563
No 104
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.71 E-value=9e-05 Score=69.12 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|++||||||+++.|+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999985
No 105
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.57 E-value=0.00066 Score=65.69 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
..++++|+|.|++||||||+++.|++. ++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~-l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE-FQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH-TT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh-cC
Confidence 456789999999999999999999986 44
No 106
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.38 E-value=0.00079 Score=73.78 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++++|+|+|.+||||||+++.|++. ++.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~-L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT-LNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH-HHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH-hcc
Confidence 46789999999999999999999996 553
No 107
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.34 E-value=0.00077 Score=65.64 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
++|+|.|+.||||||+++.|+++ ++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~-~~~~ 28 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE-TGWP 28 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-HCCC
T ss_pred eEEEEECCCCcCHHHHHHHHHhc-CCCe
Confidence 48999999999999999999986 5643
No 108
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.16 E-value=0.0021 Score=69.46 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.+++|++.|.+||||||+++.|++. ++..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~-L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY-LNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH-HHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-Hhhc
Confidence 4679999999999999999999986 5544
No 109
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.03 E-value=0.00038 Score=63.70 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++++|+|.|++||||||+++.|++.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999985
No 110
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.97 E-value=0.0061 Score=57.58 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
.|+|.|+.||||||+++.|.+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999875
No 111
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00066 Score=61.89 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+++++|+|.|.+||||||+++.|++.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 356789999999999999999999983
No 112
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.85 E-value=0.0009 Score=68.58 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=58.1
Q ss_pred CCeeeccCCCCchHHHHHhhcccchHHHH-----HHHHHHHH--HhhhhHHHhhhccc---ccccc-------hhhhhhh
Q 009257 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELK-----QLYKDKFW--EASQKMIEYLQSSV---GIIHK-------NHAESIT 196 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~l~~~~---~~~~~-------~~~~~~~ 196 (539)
-+|-.+|||||.-..||.+.||.++.++- +|.+-+=. ...+++++.....+ +|..- .....|.
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~is 114 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRATIGRIS 114 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHHHTCCEEC
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhhccCCeec
Confidence 35667799999999999999999998885 44332211 11122222222111 11110 0001111
Q ss_pred hhhhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 197 TFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+-++ ..|..|+ -.-.++.++.|.|+.|||||||+..|+..
T Consensus 115 TG~~-~LD~lL~-------ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 115 TGSK-SLDKLLG-------GGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp CSCH-HHHHHHT-------SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCH-HHHHHhc-------CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 1111 1122221 11246789999999999999999999874
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.56 E-value=0.0014 Score=59.93 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|+.||||||+++.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56779999999999999999999985
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.48 E-value=0.0015 Score=59.24 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.||||||+++.|+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999874
No 115
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.44 E-value=0.0019 Score=61.94 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.++.+|+|.|++||||||+++.|+.. ++.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~-lG~ 51 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL-LGQ 51 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH-HTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-hch
Confidence 46789999999999999999999985 453
No 116
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.43 E-value=0.013 Score=60.75 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
++.+|+|.|+.|||||||+..|+++ ++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~-l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH-FP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT-SC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH-CC
Confidence 4569999999999999999999986 44
No 117
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.32 E-value=0.0023 Score=59.95 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+|+|.|+.||||||+++.|.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5779999999999999999999985
No 118
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.26 E-value=0.0087 Score=60.26 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.||||||+++.|+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999985
No 119
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.17 E-value=0.0083 Score=65.11 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=31.5
Q ss_pred hhhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 198 FIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 198 ~i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+++...+.+...+.+..-...++.+|+|-|..||||||+++.|+..
T Consensus 270 ~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 270 LLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp HHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34444434443332222222357889999999999999999999975
No 120
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.10 E-value=0.0036 Score=59.81 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+++.+|+|.|+.|||||||++.|.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 478889999999999999999999985
No 121
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.04 E-value=0.0037 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+|+|.|+.||||||+++.|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 468999999999999999999874
No 122
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.99 E-value=0.0025 Score=60.23 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=18.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH-HH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIA-NE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLa-k~ 244 (539)
.++.+|+|.|++||||||+++.|+ ..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 357899999999999999999999 74
No 123
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.92 E-value=0.0036 Score=57.37 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+|+|.|+.||||||++++|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999985
No 124
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.86 E-value=0.1 Score=55.04 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.++++|++-|.+||||||+++.|++. ++
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~-l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY-LN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH-HH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH-Hh
Confidence 35679999999999999999999986 44
No 125
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.86 E-value=0.017 Score=59.83 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.||||||+++.|+..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 46889999999999999999999985
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.79 E-value=0.0052 Score=57.02 Aligned_cols=25 Identities=32% Similarity=0.609 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
|.|+|-|+.|||||||++.|+.. ++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~-l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER-LG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH-HG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hC
Confidence 57999999999999999999985 44
No 127
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.71 E-value=0.007 Score=60.52 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|++||||||+++.|+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999985
No 128
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.68 E-value=0.0079 Score=60.24 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|+.||||||+++.|++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999985
No 129
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.61 E-value=0.0054 Score=57.16 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+|+|-|+.||||||++++|...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3568999999999999999999874
No 130
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.53 E-value=0.01 Score=60.02 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..++.+|+|.|+.|||||||++.|+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 467889999999999999999999985
No 131
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.46 E-value=0.0088 Score=55.72 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=23.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 217 ~~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
...++.+++|-|+.||||||+++.|...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3467889999999999999999999984
No 132
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.46 E-value=0.021 Score=57.58 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.||||||+++.|+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46789999999999999999999985
No 133
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.44 E-value=0.0073 Score=57.21 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+++|-|+.||||||++++|...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35778999999999999999999984
No 134
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.43 E-value=0.0098 Score=59.23 Aligned_cols=34 Identities=32% Similarity=0.547 Sum_probs=27.7
Q ss_pred CCeeeccCCCCchHHHHHhhcccchHHHHHHHHH
Q 009257 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKD 167 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (539)
.||..+|||+|.-..||.+.||.++.+|-.+=.+
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~ 36 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVG 36 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHH
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHH
Confidence 4788899999999999999999999998644333
No 135
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.42 E-value=0.0097 Score=60.82 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.++.+|+|.|+.||||||+++.|... +.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l-l~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL-LS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH-HT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-hc
Confidence 56789999999999999999999985 44
No 136
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.40 E-value=0.011 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+++|-|+.|||||||++.|+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45779999999999999999999985
No 137
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.40 E-value=0.0091 Score=57.30 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.|||||||++.|...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35779999999999999999999985
No 138
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.24 E-value=0.044 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..||||||++..|+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 46789999999999999999999985
No 139
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.20 E-value=0.012 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIA 242 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLa 242 (539)
++-+++|-|+.||||||+++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 57799999999999999999753
No 140
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.91 E-value=0.015 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|.|+.|||||||++.|..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999999984
No 141
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.80 E-value=0.018 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999863
No 142
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.79 E-value=0.017 Score=59.38 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
|++.+|+|.|+.||||||++..|++.
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHh
Confidence 67789999999999999999999986
No 143
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.59 E-value=0.13 Score=54.74 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|+.||||||++..|+..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999975
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.59 E-value=0.046 Score=57.37 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++.+++|.|+.|||||||+..|+-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3677999999999999999997763
No 145
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.59 E-value=0.017 Score=55.88 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4577999999999999999999985
No 146
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.56 E-value=0.037 Score=54.39 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+|+|.|+.||||||++++|...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 45779999999999999999999985
No 147
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.55 E-value=0.017 Score=55.35 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++-+++|-|+.|||||||++.|+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 567999999999999999999975
No 148
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.51 E-value=0.096 Score=53.14 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..|+||||++..|+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999985
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.51 E-value=0.02 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++..|.|-|+.|+||||+++.|+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999986
No 150
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.49 E-value=0.018 Score=55.70 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 151
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.49 E-value=0.018 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++.+++|-|+.|||||||++.|+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 152
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.48 E-value=0.022 Score=58.47 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
+++|+|.|+.||||||+++.|+++ ++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~-l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA-LP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-cC
Confidence 358999999999999999999996 55
No 153
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.41 E-value=0.012 Score=60.64 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=51.8
Q ss_pred CCeeeccCCCCchHHHHHhhcccchHHHHHHHHHHHH---HhhhhHHHhhhcccccccchhhhhhhhhhhhhhhhh
Q 009257 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EASQKMIEYLQSSVGIIHKNHAESITTFIKDSVDEE 206 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 206 (539)
-+|+.||||||+-.++|.++||.++++|+++ ..+.- +.+-+..+.++ .=+.+..|+.++..|.+...+.
T Consensus 98 ~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a-~~~l~~~~~~gl~~~~~~~---~ripr~ea~~ia~~i~~~l~~~ 169 (335)
T 2fmp_A 98 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKN-EDKLNHHQRIGLKYFGDFE---KRIPREEMLQMQDIVLNEVKKV 169 (335)
T ss_dssp HHHTTSTTCCHHHHHHHHHTTCCSHHHHHTC-GGGSCHHHHHHHHTHHHHT---SCEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHcCCCCHHHHHHh-hhhhHHHHHHHHHHHHHhc---CcEEHHHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999999986 44443 33333333333 3468899999988888887543
No 154
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.39 E-value=0.022 Score=55.18 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999986
No 155
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.36 E-value=0.024 Score=55.22 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567999999999999999999986
No 156
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.33 E-value=0.028 Score=58.09 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.+|+|.|+.||||||+++.|++. ++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~-l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK-FN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH-TT
T ss_pred ceEEEECCCcCcHHHHHHHHHHH-cC
Confidence 58999999999999999999996 55
No 157
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.32 E-value=0.021 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3677999999999999999999976
No 158
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.31 E-value=0.026 Score=55.47 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
|+|+|.|.+||||||+++.|+++ +++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~-~g~ 27 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN-YSA 27 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-SCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 68999999999999999999985 453
No 159
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.25 E-value=0.022 Score=55.13 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567999999999999999999986
No 160
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.22 E-value=0.034 Score=49.37 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.|+...|+|-|..|||||||++.|..
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46778999999999999999999975
No 161
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.13 E-value=0.028 Score=55.42 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 162
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.08 E-value=0.025 Score=55.59 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3677999999999999999999986
No 163
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.08 E-value=0.025 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677999999999999999999986
No 164
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.08 E-value=0.029 Score=53.02 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+.+.|+|-|..|||||||++.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 5667899999999999999999875
No 165
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.05 E-value=0.025 Score=55.94 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 166
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.02 E-value=0.037 Score=47.19 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
|+...|+|-|..|||||||++.|...
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999763
No 167
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.01 E-value=0.026 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 168
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.99 E-value=0.026 Score=55.50 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4677999999999999999999986
No 169
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.99 E-value=0.039 Score=47.29 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
|+..-|+|-|..|||||||++.|..
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999999876
No 170
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.98 E-value=0.022 Score=54.61 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999976
No 171
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.93 E-value=0.046 Score=59.32 Aligned_cols=29 Identities=7% Similarity=0.204 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.+++.|+|.|..||||||+++.|+++ |+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~-L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLST-FLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHH-HTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHH-HHH
Confidence 46789999999999999999999997 564
No 172
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=93.93 E-value=0.021 Score=58.81 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=52.3
Q ss_pred CCee-eccCCCCchHHHHHhhcccchHHHHHHHHHHHH-HhhhhHHHhhhcccccccchhhhhhhhhhhhhhhh
Q 009257 134 PDLL-TIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW-EASQKMIEYLQSSVGIIHKNHAESITTFIKDSVDE 205 (539)
Q Consensus 134 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 205 (539)
-+|| .||||||+..++|.+.||.++++|++.-+.|-- +++-+..+.++ .=+.+..|+.++..|.+...+
T Consensus 95 l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~k~~q~Igl~~~~~~~---~ripr~ea~~ia~~i~~~l~~ 165 (335)
T 2bcq_A 95 LELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFL---ERMPREEATEIEQTVQKAAQA 165 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCCCHHHHHHHHTTTGGG---CCEEHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcccHHHHHHHHHHHHhc---CCEEHHHHHHHHHHHHHHHHh
Confidence 3566 899999999999999999999999987665444 45444444444 336788899988888877743
No 173
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.93 E-value=0.026 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3577999999999999999999986
No 174
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.93 E-value=0.027 Score=55.60 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3577999999999999999999986
No 175
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.90 E-value=0.028 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3567999999999999999999986
No 176
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.90 E-value=0.049 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..++|-|+.|||||||++.|+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999999984
No 177
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.90 E-value=0.093 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+|+|-|+.||||||++..|+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999975
No 178
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.90 E-value=0.038 Score=48.78 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
|+...|+|-|..|||||||++.|..
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC
Confidence 4557899999999999999999975
No 179
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.88 E-value=0.026 Score=57.32 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.++.|.|..|+||||++..|+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
No 180
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.86 E-value=0.03 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+|+|-|+.||||||++++|+..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 46899999999999999999985
No 181
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.83 E-value=0.029 Score=55.15 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4677999999999999999999986
No 182
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.81 E-value=0.029 Score=55.40 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 3677999999999999999999986
No 183
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.80 E-value=0.033 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak 243 (539)
-+++|-|+.|||||||++.|+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 184
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.77 E-value=0.03 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567999999999999999999986
No 185
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.77 E-value=0.5 Score=50.45 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..||||||++..|+.+
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHH
Confidence 36889999999999999999999986
No 186
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.76 E-value=0.039 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+++|.|+.||||||+++.|+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999864
No 187
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.76 E-value=0.034 Score=56.48 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.|||||||+++|...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 46779999999999999999999984
No 188
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.76 E-value=0.021 Score=54.37 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++-+++|-|+.|||||||++.|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 189
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.71 E-value=0.031 Score=55.61 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++-+++|-|+.|||||||++.|+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 677999999999999999999986
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.63 E-value=0.031 Score=56.12 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=0.0
Q ss_pred CCCeeeccCCCCchHHHHHhhcccchHHHH
Q 009257 133 NPDLLTIPGVGPRNLRKLVDNGIGDVAELK 162 (539)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (539)
.-||-.+|||+|.-..||.+.||.++.++-
T Consensus 11 ~~~~~~l~g~~~~~~~~l~~~g~~t~~~~~ 40 (324)
T 2z43_A 11 IKTINDLPGISQTVINKLIEAGYSSLETLA 40 (324)
T ss_dssp ------------------------------
T ss_pred CccHHHcCCCCHHHHHHHHHcCCCcHHHHH
Confidence 347778899999999999999999988875
No 191
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.60 E-value=0.051 Score=47.46 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..|.|.|+.|+||||+++.+++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345788999999999999999986
No 192
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.58 E-value=0.054 Score=46.42 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
|+..-|+|-|..|||||||++.|...
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 55678999999999999999999863
No 193
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.55 E-value=0.052 Score=46.75 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
|+..-|+|-|..|||||||++.|..
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Confidence 4557899999999999999999976
No 194
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.43 E-value=0.036 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3677999999999999999999976
No 195
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.37 E-value=0.09 Score=53.63 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|+.||||||+++.|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999985
No 196
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.31 E-value=0.05 Score=48.51 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.|+.+.|+|-|..|||||||++.|...
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 467789999999999999999999863
No 197
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.18 E-value=0.064 Score=55.08 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
++.+|+|.|+.|||||||+..|++. ++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~-~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI-LP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH-SC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CC
Confidence 4568999999999999999999986 44
No 198
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.14 E-value=0.071 Score=46.50 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++..-|+|-|..|||||||++.|...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 355678999999999999999999863
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.12 E-value=0.055 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++.+++|.|..||||||++..|+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 200
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.10 E-value=0.05 Score=56.50 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhc
Confidence 4577999999999999999999986
No 201
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.07 E-value=0.064 Score=49.19 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..|.|.|+.|+||||+++.|++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999986
No 202
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.99 E-value=0.11 Score=54.78 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC-CceEEeeCCc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR-DLVEIVPEPI 259 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~-~~~EvV~EPi 259 (539)
++-+|+|.|+.||||||+++.|... +... ....+..+|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~-l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE-LNSSERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH-HCCTTSCEEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh-cCCCCCEEEEecccc
Confidence 4558999999999999999999885 4322 2233445554
No 203
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.98 E-value=0.058 Score=50.14 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+++|.|+.||||||++..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35779999999999999999999874
No 204
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.95 E-value=0.035 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+|+|.|..||||||++++|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999985
No 205
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.92 E-value=0.047 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
+-+++|-|+.|||||||++.|+.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999999986
No 206
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.92 E-value=0.1 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++-+|+|.|+.||||||+++.|...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3448999999999999999999875
No 207
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.90 E-value=0.068 Score=48.17 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..+.|.|+.|+||||+++.+++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999986
No 208
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.86 E-value=0.058 Score=55.87 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++-+++|-|+.|||||||+++|+.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 577999999999999999999986
No 209
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.86 E-value=0.078 Score=49.20 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
|+++++++.|+.|+||||++-.++..
T Consensus 1 ~~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 1 MSGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp -CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999998555443
No 210
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.86 E-value=0.072 Score=49.49 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..+|+|.|..||||||+++.|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 358999999999999999999875
No 211
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.82 E-value=0.048 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+|+|.|+.||||||++++|...
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4558999999999999999999874
No 212
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.81 E-value=0.045 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++..++|-|+.|+||||+++.|...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5668899999999999999999985
No 213
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.80 E-value=0.06 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHC
Confidence 3567999999999999999999986
No 214
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.74 E-value=0.061 Score=55.79 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhc
Confidence 3577999999999999999999986
No 215
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.72 E-value=0.062 Score=55.97 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 3577999999999999999999986
No 216
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.68 E-value=0.066 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..|.|.|+.|+||||+++.+++.
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999986
No 217
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.68 E-value=0.063 Score=55.78 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++-+++|-|+.|||||||+++|+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 567999999999999999999986
No 218
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.67 E-value=0.066 Score=50.91 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
|.|.|+.|+||||+++.|+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999985
No 219
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.67 E-value=0.074 Score=48.34 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
....|+|-|..|||||||++.|...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999863
No 220
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.65 E-value=0.047 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 4677999999999999999999976
No 221
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.63 E-value=0.079 Score=46.45 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++..-|+|-|..|||||||++.|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC
Confidence 466788999999999999999999863
No 222
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.62 E-value=0.064 Score=56.14 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHc
Confidence 4577999999999999999999986
No 223
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.61 E-value=0.079 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+|+|.|..||||||++..|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999885
No 224
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.59 E-value=0.087 Score=47.31 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+-|+|-|..|||||||++.|...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 466788999999999999999999763
No 225
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.57 E-value=0.054 Score=59.19 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.++.+|+|.|..||||||+++.|+.. +.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~-L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR-LM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH-HH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh-hc
Confidence 46889999999999999999999986 44
No 226
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.55 E-value=0.045 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++..|+|-|..|||||||++.|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4577899999999999999998864
No 227
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.55 E-value=0.076 Score=54.82 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+|+|.|+.||||||++++|...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35668999999999999999999985
No 228
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.52 E-value=0.079 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+..-|+|-|..|||||||++.|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999976
No 229
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=92.52 E-value=0.032 Score=58.45 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=49.9
Q ss_pred CCeeeccCCCCchHHHHHhhcccchHHHHHHHHHHH---HHhhhhHHHhhhcccccccchhhhhhhhhhhhhhhhh
Q 009257 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKF---WEASQKMIEYLQSSVGIIHKNHAESITTFIKDSVDEE 206 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 206 (539)
-+|+.||||||+-.++|.+.||.++++|++-.-.|. -+++-+..+.++. =+.+..|+.|+..|.+...+.
T Consensus 121 ~~l~~I~GvGpk~a~~ly~~Gi~tledL~~~~g~kl~~~q~~Gl~~~~d~~~---ripr~ea~~ia~~i~~~l~~~ 193 (381)
T 1jms_A 121 KLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVS---CVNRPEAEAVSMLVKEAVVTF 193 (381)
T ss_dssp HHHHTSTTCCHHHHHHHHHTTCCSHHHHHHCSSCCCCHHHHHHHHTHHHHHS---CBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHcCCCcHHHHHhCcccchHHHHHHHHHHHHHhcC---CEEHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999996100011 1233333444433 378899999988888887543
No 230
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.44 E-value=0.074 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|..|+|||||++.|+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999875
No 231
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.43 E-value=0.055 Score=55.83 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHc
Confidence 3567999999999999999999986
No 232
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=92.43 E-value=0.059 Score=45.15 Aligned_cols=32 Identities=41% Similarity=0.665 Sum_probs=26.3
Q ss_pred CeeeccCCCCchHHHHHhhcccchHHHHHHHHH
Q 009257 135 DLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKD 167 (539)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (539)
-|..||||||+|.++|.. -|+++.+|+++=-+
T Consensus 19 ~L~~IpGIG~kr~~~LL~-~FgSl~~i~~AS~e 50 (84)
T 1z00_B 19 FLLKMPGVNAKNCRSLMH-HVKNIAELAALSQD 50 (84)
T ss_dssp HHHTCSSCCHHHHHHHHH-HSSCHHHHHHSCHH
T ss_pred HHHhCCCCCHHHHHHHHH-HcCCHHHHHHCCHH
Confidence 467899999999999994 69999988865433
No 233
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.39 E-value=0.077 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..|+|-|..|||||||++.|...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999974
No 234
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.38 E-value=0.083 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
|+.+.|+|-|+.|||||||++.|..
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999975
No 235
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.34 E-value=0.077 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
-|.|.|+.|+||||+++.|+.. ++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~-~~~ 71 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE-AKV 71 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH-HTC
T ss_pred eEEEECcCCCCHHHHHHHHHHH-cCC
Confidence 3789999999999999999986 443
No 236
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.33 E-value=0.12 Score=44.73 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+.+.|+|-|..|||||||++.|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999999975
No 237
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.32 E-value=0.072 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 224 FCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
|.|.|+.|+||||+++.|+.. ++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~-~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE-SGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH-TTC
T ss_pred EEEECCCCCcHHHHHHHHHHH-cCC
Confidence 899999999999999999985 443
No 238
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.30 E-value=0.088 Score=47.00 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++..|+|-|..|||||||++.|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999975
No 239
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.29 E-value=0.091 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
...|+|-|..|||||||++.|..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 35789999999999999999986
No 240
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.24 E-value=0.097 Score=45.95 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
|+..-|+|-|..|||||||++.|..
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc
Confidence 5677899999999999999999975
No 241
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.21 E-value=0.078 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 4677999999999999999999986
No 242
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.21 E-value=0.11 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999975
No 243
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.17 E-value=0.078 Score=55.52 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4677999999999999999999986
No 244
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.13 E-value=0.11 Score=46.86 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=23.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 216 PAPKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 216 ~~~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
..+++.+-|+|-|..|||||||++.|..
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3457788999999999999999988875
No 245
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.13 E-value=0.092 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|-|..|||||||++.|...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999874
No 246
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.12 E-value=0.1 Score=44.90 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+..-|+|-|..|||||||++.|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 356799999999999999999986
No 247
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.10 E-value=0.092 Score=45.68 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+++..-|+|-|..|||||||++.|..
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHc
Confidence 35667899999999999999999975
No 248
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.09 E-value=0.092 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
|.|.|+.|+||||+++.+++.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999986
No 249
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.09 E-value=0.087 Score=47.28 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak 243 (539)
+.+|.|..||||||++++|.-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999985
No 250
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.08 E-value=0.052 Score=56.00 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3567999999999999999999986
No 251
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.06 E-value=0.11 Score=44.58 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.|+|-|..|||||||++.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 252
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.01 E-value=0.1 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+..-|+|-|..|||||||++.|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 456799999999999999999865
No 253
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.00 E-value=0.095 Score=45.76 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|..|||||||++.|..
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHc
Confidence 3456899999999999999999975
No 254
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.96 E-value=0.083 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
..++|.|+.|+||||+++.|+.. ++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~-l~~ 77 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE-LQT 77 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH-HTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHH-hCC
Confidence 35789999999999999999986 553
No 255
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.93 E-value=0.11 Score=47.43 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
..|.|.|+.|+||||+++.|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999863
No 256
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.90 E-value=0.12 Score=45.13 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++..-|+|-|..|||||||++.|..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 4567899999999999999999975
No 257
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.86 E-value=0.13 Score=50.83 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+..|.|.|++|+|||++++.|++. ++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~-l~~~ 63 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK-MGIN 63 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH-HTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 456778899999999999999996 6654
No 258
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.84 E-value=0.077 Score=53.23 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
-.+++|.|..||||||+++.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 458999999999999999999874
No 259
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.12 Score=46.16 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.+.|+|-|..|||||||+..|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999863
No 260
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.80 E-value=0.15 Score=44.96 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+-|+|-|..|||||||++.|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999999863
No 261
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.78 E-value=0.11 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
..-|+|-|..|||||||++.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999975
No 262
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=91.78 E-value=0.04 Score=57.21 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=49.1
Q ss_pred CCeeeccCCCCchHHHHHhhcccchHHHHHHHHHHHH---HhhhhHHHhhhcccccccchhhhhhhhhhhhhhhh
Q 009257 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EASQKMIEYLQSSVGIIHKNHAESITTFIKDSVDE 205 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 205 (539)
-+|+.||||||+-.++|.+.||.++++|+ ....+.- +++-+..+.++.- +.+..|+.++..|.+...+
T Consensus 102 ~~l~~I~GvG~kta~~l~~~Gi~tledL~-~~~~~L~~~~~~Gl~~~~d~~~r---ipr~ea~~i~~~i~~~l~~ 172 (360)
T 2ihm_A 102 KLFTQVFGVGVKTANRWYQEGLRTLDELR-EQPQRLTQQQKAGLQYYQDLSTP---VRRADAEALQQLIEAAVRQ 172 (360)
T ss_dssp HHHHTSTTCCHHHHHHHHHTTCCSHHHHH-TCCTTCCHHHHHHHHTHHHHHSC---EEHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHHcCCCCHHHHH-hcccchHHHHHHHHHHHHHhcCC---EEHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999998 3222221 2333334444333 6789999998888877743
No 263
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.77 E-value=0.12 Score=52.59 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.+|+|.|..|||||||++.|...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999874
No 264
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.72 E-value=0.12 Score=46.80 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|..|||||||++.|..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4568999999999999999999976
No 265
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.72 E-value=0.13 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+...|+|-|..||||||++..|...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 266
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.68 E-value=0.099 Score=46.89 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak 243 (539)
..|+|-|..|||||||++.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999875
No 267
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.60 E-value=0.098 Score=50.69 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
|.|.|+.|+||||+++.|+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 789999999999999999985
No 268
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.58 E-value=0.11 Score=45.62 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+-|+|-|..|||||||++.|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999863
No 269
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.55 E-value=0.12 Score=47.81 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|..|||||||++.|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 4567899999999999999999975
No 270
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.54 E-value=0.11 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
|+.+.|+|-|..|||||||++.|..
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC
Confidence 5678999999999999999999975
No 271
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.53 E-value=0.11 Score=48.97 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.-|.|.|+.|+||||+++.|++. ++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~-~~~~ 66 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE-AQVP 66 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH-HTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 34789999999999999999986 5543
No 272
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.53 E-value=0.085 Score=56.27 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+++|-|+.|||||||+++|+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5678999999999999999999874
No 273
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.49 E-value=0.12 Score=54.74 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.+|+|.|+.||||||++..|++. ++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~-~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK-FN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH-HT
T ss_pred cEEEEECcchhhHHHHHHHHHHH-CC
Confidence 58999999999999999999986 44
No 274
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.44 E-value=0.13 Score=44.81 Aligned_cols=26 Identities=31% Similarity=0.578 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+..-|+|-|..|||||||++.|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999998763
No 275
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.40 E-value=0.11 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.+++|-|+.|||||||++.|. .
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-S
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-H
Confidence 46689999999999999999998 5
No 276
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.37 E-value=0.16 Score=44.83 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
..+...|+|-|..|||||||++.|..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh
Confidence 35677899999999999999999986
No 277
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.35 E-value=0.16 Score=45.30 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|..|||||||++.|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4567899999999999999999976
No 278
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.35 E-value=0.075 Score=53.95 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+|+|.|+.||||||++++|...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999999874
No 279
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.31 E-value=0.11 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
-|.|.|+.|+||||+++.|++. ++.
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~-~~~ 77 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE-TNA 77 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH-TTC
T ss_pred eEEEECCCCCcHHHHHHHHHHH-hCC
Confidence 4788999999999999999986 554
No 280
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.31 E-value=0.12 Score=45.62 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 3567899999999999999999975
No 281
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.30 E-value=0.13 Score=44.44 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak 243 (539)
+-|+|-|..|||||||++.|..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 5689999999999999998853
No 282
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.18 E-value=0.11 Score=45.71 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999988753
No 283
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.18 E-value=0.14 Score=45.74 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++..-|+|-|..|||||||++.|..
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHc
Confidence 35678899999999999999999975
No 284
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.13 E-value=0.12 Score=44.51 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++..-|+|-|..|||||||++.|..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3457899999999999999999976
No 285
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=91.11 E-value=0.084 Score=41.61 Aligned_cols=29 Identities=41% Similarity=0.714 Sum_probs=24.1
Q ss_pred eeeccCCCCchHHHHHhhcccchHHHHHHH
Q 009257 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQLY 165 (539)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (539)
|..||||||++.++|.+ -|+++.+++++=
T Consensus 6 L~~IpGIG~kr~~~LL~-~Fgs~~~i~~As 34 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH-HVKNIAELAALS 34 (63)
T ss_dssp HHTSTTCCHHHHHHHHH-HCSSHHHHHTCC
T ss_pred HHcCCCCCHHHHHHHHH-HcCCHHHHHHCC
Confidence 56799999999999995 699988887543
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.10 E-value=0.12 Score=50.07 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|.|+.|||||||+..|+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 36779999999999999999999864
No 287
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.09 E-value=0.12 Score=44.63 Aligned_cols=25 Identities=24% Similarity=0.692 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..-|+|-|..|||||||++.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999999763
No 288
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.09 E-value=0.17 Score=44.77 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.....|+|-|..|||||||++.|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHc
Confidence 3456789999999999999999975
No 289
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.09 E-value=0.14 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
+.-|.|.|+.|+||||+++.|++. ++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~-~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE-CS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH-TT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH-hC
Confidence 346789999999999999999986 44
No 290
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.04 E-value=0.1 Score=50.57 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..++.|+|.|+.|+||||++..|+++
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 46788999999999999999999985
No 291
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.04 E-value=0.15 Score=45.45 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999975
No 292
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.97 E-value=0.16 Score=45.45 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 293
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.92 E-value=0.14 Score=44.97 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
-|.|.|..|+|||++++.|.+.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999999874
No 294
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.91 E-value=0.16 Score=46.76 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+...|+|-|..||||||++..|...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999875
No 295
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.89 E-value=0.16 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+-|+|-|..|||||||++.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35789999999999999999975
No 296
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.89 E-value=0.15 Score=44.69 Aligned_cols=25 Identities=16% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++..-|+|-|..|||||||++.|..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 4567899999999999999999976
No 297
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.86 E-value=0.15 Score=46.18 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++..-|+|-|..|||||||++.|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 56788999999999999999999863
No 298
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.83 E-value=0.2 Score=48.47 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
...|.|.|+.|+||||+++.|++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3478999999999999999999863
No 299
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.82 E-value=0.15 Score=50.31 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
+.-|.|.|+.|+||||+++.|++. ++
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~-~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE-CQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH-TT
T ss_pred CceEEEECCCCcCHHHHHHHHHHH-hC
Confidence 346789999999999999999986 44
No 300
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.80 E-value=0.17 Score=44.39 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+..-|+|-|..|||||||++.|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999986
No 301
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.78 E-value=0.17 Score=43.66 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+..-|+|-|..|||||||++.|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999986
No 302
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.73 E-value=0.18 Score=45.14 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+..-|+|-|..|||||||++.|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 44578999999999999999999863
No 303
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.73 E-value=0.19 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.-|.|.|+.|+||||+++.|++.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999986
No 304
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.70 E-value=0.15 Score=45.52 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
......|+|-|..|||||||++.|..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45678899999999999999998864
No 305
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.70 E-value=0.18 Score=46.12 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+...|+|-|..|+|||||+..|...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999999874
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.64 E-value=0.94 Score=47.88 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..|+||||++-.|+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999975
No 307
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.63 E-value=0.15 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+|+|-|..|||||||++.|..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999986
No 308
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.61 E-value=0.15 Score=45.81 Aligned_cols=26 Identities=23% Similarity=0.627 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+..-|+|-|..|||||||++.|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999999763
No 309
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.61 E-value=0.16 Score=43.91 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak 243 (539)
+-|+|-|..|||||||++.|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999863
No 310
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.60 E-value=0.15 Score=44.69 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++..-|+|-|..|||||||++.|..
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999986
No 311
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.60 E-value=0.19 Score=45.29 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++..-|+|-|..|||||||++.|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999863
No 312
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.60 E-value=0.19 Score=43.95 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+..-|+|-|..|||||||++.|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 44678999999999999999999763
No 313
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.58 E-value=0.16 Score=47.17 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++-+++|.|..|+||||++..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999998777653
No 314
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.49 E-value=0.15 Score=45.27 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
..+...|+|-|..|||||||++.|..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Confidence 35678899999999999999999975
No 315
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.48 E-value=0.19 Score=44.73 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999999974
No 316
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.48 E-value=0.19 Score=43.99 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++..-|+|-|..|+|||||++.|..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999976
No 317
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.47 E-value=0.32 Score=49.44 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+..+|+|.|..|+||||++..|+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999875
No 318
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.47 E-value=0.16 Score=55.26 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
..++-+++|-|+.|||||||++.|+.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45788999999999999999999986
No 319
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.43 E-value=0.17 Score=44.06 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+..-|+|-|..|||||||++.|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998864
No 320
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.41 E-value=0.18 Score=44.65 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999875
No 321
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.36 E-value=0.15 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+++|-|+.|||||||++.|..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHhc
Confidence 355899999999999999999985
No 322
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.33 E-value=0.17 Score=46.11 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 4467899999999999999999975
No 323
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.28 E-value=0.19 Score=44.80 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+...|+|-|..|||||||++.|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999863
No 324
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.25 E-value=0.16 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+.+++|-|+.|||||||++.|..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc
Confidence 466899999999999999999975
No 325
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.23 E-value=0.2 Score=43.43 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..-|+|-|..|||||||++.|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999863
No 326
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.22 E-value=0.18 Score=45.21 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+.+-|+|-|..|||||||++.|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999999976
No 327
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.21 E-value=0.15 Score=55.32 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++.+++|-|+.||||||++++|..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999999986
No 328
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.20 E-value=0.18 Score=45.21 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.+-|+|-|..|+|||||++.|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 56789999999999999999999863
No 329
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.14 E-value=0.2 Score=45.10 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+...|+|-|..|||||||++.|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999999763
No 330
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.12 E-value=0.16 Score=55.22 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.||||||++++|..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3677999999999999999999986
No 331
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.10 E-value=0.19 Score=45.71 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
...+-|+|-|..|||||||++.|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999863
No 332
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.10 E-value=0.21 Score=45.22 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++...|+|-|..|||||||++.|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4667899999999999999998853
No 333
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.08 E-value=0.17 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
-|.|.|+.|+||||+++.|++. ++.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~-l~~ 76 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKL-ANA 76 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH-HTC
T ss_pred eEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 4578899999999999999986 554
No 334
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.07 E-value=0.19 Score=45.46 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3455899999999999999999986
No 335
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.05 E-value=0.16 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5678999999999999999999986
No 336
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.04 E-value=0.16 Score=45.45 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678899999999999999999875
No 337
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.03 E-value=0.2 Score=45.03 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|..|||||||++.|..
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 5667899999999999999999876
No 338
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.00 E-value=0.13 Score=55.50 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..|+|.|+.||||||+++.|...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999999874
No 339
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.99 E-value=0.18 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+-|+|-|..|||||||++.|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999999863
No 340
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.99 E-value=0.19 Score=47.91 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|.+||||||+++.|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999975
No 341
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.97 E-value=0.23 Score=43.69 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..-|+|-|..|||||||++.|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999999763
No 342
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.96 E-value=0.23 Score=51.77 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
+.+.|+|-|+.||||||+++.|++. ++.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~-l~~ 50 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI-INE 50 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH-HHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH-hCC
Confidence 4457999999999999999999985 443
No 343
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.95 E-value=0.19 Score=44.41 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+..-|+|-|..|||||||++.|...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh
Confidence 34578999999999999999988764
No 344
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.94 E-value=0.17 Score=44.88 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++...|+|-|..|||||||++.|...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999763
No 345
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.92 E-value=0.25 Score=44.26 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|..|||||||++.|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 3457899999999999999999976
No 346
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.92 E-value=0.22 Score=45.59 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=21.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++..-|+|-|..|||||||+..|..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 46778999999999999999999986
No 347
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.91 E-value=0.17 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++-+++|-|+.|||||||++.|..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 577999999999999999999986
No 348
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=89.82 E-value=0.053 Score=63.06 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=29.1
Q ss_pred ccchhhhhhhhhhhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHH
Q 009257 187 IHKNHAESITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFL 238 (539)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLa 238 (539)
+.++|+..| .|+-+...+|+.+|.+ -.++.+++|+|..|||||||+
T Consensus 16 ~~~~~~~~I--~i~gar~hNLkni~v~----iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 16 PRGSHMDKI--IVKGARAHNLKNIDVE----IPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp -----CCEE--EEEEECSSSCCSEEEE----EETTSEEEEEESTTSSHHHHH
T ss_pred cCcCCCceE--EEeccccccCCceeee----ccCCcEEEEECCCCCCHHHHH
Confidence 444454444 4666665666655542 136779999999999999997
No 349
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.81 E-value=0.23 Score=47.75 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
...-|.|.|+.|+||||+++.|++. ++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~-~~~~ 91 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE-SNFP 91 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH-HTCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-hCCC
Confidence 3456789999999999999999986 5543
No 350
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.79 E-value=0.24 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+.+-|+|-|..|||||||++.|..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 456899999999999999999986
No 351
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.78 E-value=0.22 Score=42.80 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
-|+|-|..|||||||++.|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
No 352
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.75 E-value=0.23 Score=45.99 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=22.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+-|+|-|..|||||||++.|...
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcC
Confidence 467789999999999999999999763
No 353
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.67 E-value=0.5 Score=44.50 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETL 246 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L 246 (539)
..+++++++.|+.|+||||.+-.++..+.
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 35678999999999999999888877643
No 354
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.66 E-value=0.19 Score=49.38 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..|.|.|+.|+||||+++.+++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 447789999999999999999985
No 355
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.64 E-value=0.2 Score=44.18 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak 243 (539)
-|+|-|..|||||||++.|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 356
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.61 E-value=0.19 Score=49.50 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..+.|.|+.|+||||+++.|++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34678999999999999999986
No 357
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.59 E-value=0.2 Score=49.20 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
+.|.|+.|+||||+++.|++.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999986
No 358
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.55 E-value=0.17 Score=46.13 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIA 242 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLa 242 (539)
.+...|+|-|..|||||||++.|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999885
No 359
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.53 E-value=0.2 Score=45.64 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445789999999999999999864
No 360
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.46 E-value=0.23 Score=45.26 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+...|+|-|..|||||||+..|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999863
No 361
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.43 E-value=0.23 Score=52.83 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
=|.+.|++|+|||++++.|+.+ ++..
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e-~~~~ 242 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT-IGAN 242 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH-HTCE
T ss_pred eEEEECCCCCcHHHHHHHHHHH-hCCC
Confidence 4578999999999999999996 5654
No 362
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.41 E-value=0.41 Score=46.34 Aligned_cols=30 Identities=23% Similarity=0.090 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
..++.++++.|+.|+||||++-.++..+.+
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 356889999999999999988777765433
No 363
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.31 E-value=0.24 Score=52.58 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
=|.+.|++|+|||++++.|+.+ ++..
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~-~~~~ 233 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS-TKAA 233 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH-HTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 3688999999999999999996 6654
No 364
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.30 E-value=0.2 Score=55.23 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++-+++|-|+.|||||||++.|+.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999999986
No 365
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.23 E-value=0.18 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++-+++|-|+.|||||||+++|+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999986
No 366
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.18 E-value=0.3 Score=43.51 Aligned_cols=25 Identities=44% Similarity=0.595 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
...-|+|-|..|||||||++.|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999999763
No 367
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.14 E-value=0.26 Score=44.11 Aligned_cols=25 Identities=44% Similarity=0.612 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+-|+|-|..|||||||++.|...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 4578999999999999999999874
No 368
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.08 E-value=0.12 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 224 FCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
|.|.|+.|+||||+++.|++. ++.
T Consensus 47 vll~G~~GtGKT~la~~la~~-~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE-AHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH-HTC
T ss_pred EEEECCCCCcHHHHHHHHHHH-hCC
Confidence 568999999999999999986 454
No 369
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.05 E-value=0.25 Score=49.12 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
+..+.|.|+.|+||||+++.+++. ++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~-l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA-LGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH-HCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-hcc
Confidence 457789999999999999999986 553
No 370
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.01 E-value=0.22 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||++.|+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 4678999999999999999999986
No 371
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.01 E-value=0.19 Score=49.76 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
+.|.|+.|+||||+++.|++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999985
No 372
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.99 E-value=0.19 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCeE--EEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRIT--FCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~--IaIEG~IGSGKSTLaklLak 243 (539)
++-+ |+|-|..|||||||++.|..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 4556 99999999999999999976
No 373
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=88.95 E-value=0.25 Score=44.55 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
....-|+|-|..|||||||++.|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4457899999999999999999864
No 374
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.92 E-value=0.5 Score=42.59 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 009257 356 IPDGFIYLRASPDTCHKRMMLRK 378 (539)
Q Consensus 356 ~PDLIIYLdaspE~~leRIkkRG 378 (539)
.+|.+|||+++++++++|+.+|.
T Consensus 124 ~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 124 RLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp GSSEEEEECCCHHHHHHHHHTTT
T ss_pred hCCEEEEEECCHHHHHHHHHHcC
Confidence 46899999999999999998874
No 375
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.91 E-value=0.28 Score=44.11 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|..|||||||++.|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4677899999999999999999875
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.91 E-value=0.26 Score=49.87 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..|+||||+++.|...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999875
No 377
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.89 E-value=0.29 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999865
No 378
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.83 E-value=0.24 Score=49.97 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.-|.|.|+.|+||||+++.|++. ++..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~-~~~~ 78 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL-LDVP 78 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH-TTCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 345688999999999999999986 5543
No 379
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=88.82 E-value=0.21 Score=44.44 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIA 242 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLa 242 (539)
.+..-|+|-|..|||||||++.|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999885
No 380
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.81 E-value=0.27 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.|.|+.|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999986
No 381
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.80 E-value=0.3 Score=44.06 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
...+-|+|-|..|||||||+..|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3467899999999999999999975
No 382
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.79 E-value=0.25 Score=50.63 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46779999999999999999999984
No 383
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.76 E-value=0.38 Score=45.42 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
-++..++++-|--||||||++..|+..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 367789999999999999999999975
No 384
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=88.75 E-value=1.1 Score=44.88 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+|+|.|..|+||||++..|+..
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999975
No 385
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.73 E-value=0.18 Score=46.17 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+...|+|-|..|||||||++.|..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 456899999999999999999875
No 386
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.73 E-value=0.16 Score=55.23 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++.+++|-|+.||||||++++|..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3577999999999999999999976
No 387
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.73 E-value=0.11 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+++|-|+.|||||||++.|..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 356999999999999999999975
No 388
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=88.65 E-value=0.24 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+.|+|-|+.|||||||++.|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999975
No 389
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.58 E-value=0.28 Score=43.93 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
+-+.+|.|+.||||||+++.|.=
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999974
No 390
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.56 E-value=0.26 Score=46.72 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
..|++.|.|++|+||||++..+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHH
Confidence 357999999999999999877643
No 391
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.54 E-value=0.25 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
-|.|.|+.|+||||+++.|++. ++.
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~-l~~ 98 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKH-LDI 98 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH-TTC
T ss_pred CEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 4688999999999999999986 553
No 392
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.49 E-value=0.94 Score=48.98 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..||||||++..|+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999975
No 393
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.46 E-value=0.27 Score=44.45 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=20.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
..+.+-|+|-|..|||||||++.|..
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh
Confidence 35677899999999999999997765
No 394
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.46 E-value=0.26 Score=49.13 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
+.|.|+.|+||||+++.|++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999986
No 395
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.39 E-value=0.27 Score=53.15 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
++..+.|.|+.|+||||+++.|+.. ++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~-l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS-LG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH-HT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh-cC
Confidence 5668999999999999999999985 44
No 396
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.37 E-value=0.35 Score=43.90 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++..-|+|-|..|+|||||++.|..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3557899999999999999999976
No 397
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.34 E-value=0.25 Score=53.34 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
-+++|-|+.|||||||+++|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999999874
No 398
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.28 E-value=0.27 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.-|.|.|+.|+||||+++.|++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 45678999999999999999986
No 399
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.23 E-value=0.26 Score=49.09 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+...-+|+|-|..|||||||++.|..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45667999999999999999999975
No 400
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.22 E-value=0.31 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+|+|.|..|+||||++..|+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999975
No 401
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.22 E-value=0.17 Score=54.99 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.||||||++++|..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 3678999999999999999999975
No 402
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.21 E-value=0.32 Score=44.90 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+...|+|-|..|||||||++.|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999863
No 403
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.19 E-value=0.28 Score=48.79 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.-|.|.|+.|+||||+++.|++. ++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~-~~~~ 78 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE-ANST 78 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH-HTCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHH-HCCC
Confidence 45788999999999999999986 4543
No 404
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.12 E-value=0.25 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..+|+|-|..|||||||++.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 4566899999999999999999975
No 405
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.08 E-value=0.29 Score=47.23 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.|.|+.|+||||+++.+++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3789999999999999999986
No 406
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.02 E-value=0.27 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak 243 (539)
-+++|-|+.|||||||++.|+.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999986
No 407
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.02 E-value=0.23 Score=54.74 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.|||||||+++|+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhC
Confidence 5677999999999999999999986
No 408
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.01 E-value=0.2 Score=54.63 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++-+++|-|+.||||||++++|..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3678999999999999999999976
No 409
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.00 E-value=0.3 Score=51.73 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++-+++|-|+.|||||||++.|+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56779999999999999999999984
No 410
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=87.97 E-value=0.26 Score=42.08 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=28.4
Q ss_pred CCeeeccCCCCchHHHHHhhcccchHHHHHH
Q 009257 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQL 164 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (539)
.+|-.||+|||.-.+.|.+-||.++++|+++
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~ 34 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHcCCCCHHHHHhC
Confidence 4678899999999999999999999999954
No 411
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.92 E-value=0.32 Score=51.73 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.=|.+.|++|+|||++++.|+.+ ++..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e-~~~~ 242 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ-TNAT 242 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH-HTCE
T ss_pred CeeEEECcCCCCHHHHHHHHHHH-hCCC
Confidence 34678999999999999999996 5654
No 412
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.88 E-value=0.36 Score=47.96 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..|.|.|+.|+||||+++.+++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999986
No 413
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.85 E-value=0.36 Score=43.67 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
...-|+|-|..|||||||++.|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 414
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=87.85 E-value=0.3 Score=41.59 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=43.3
Q ss_pred CCCCCeeeccCCCCchHHHHHhhcccchHHHHHHHHHHHH---HhhhhHHHhhhcccccccchhh
Q 009257 131 VGNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EASQKMIEYLQSSVGIIHKNHA 192 (539)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 192 (539)
+|+.++--+|||||.--++|+++||..--+|-- +|. |--+...++|....|...|+.-
T Consensus 15 mgeK~V~evpGIG~~~~~~L~~~Gf~kAy~lLG----qFL~l~kd~~~F~~WLk~~~gan~kq~~ 75 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLG----QFLVLKKDEDLFREWLKDTCGANAKQSR 75 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHHHHHTTCCSHHHHHH----HHHHTTTCHHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCcccCCCcCHHHHHHHHHcCccHHHHHHH----HHHHcCCCHHHHHHHHHHHhCcCHHHHH
Confidence 899999999999999999999999997655542 332 3344557788887776544433
No 415
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.84 E-value=0.31 Score=48.07 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.|.|.|+.|+||||+++.|++. ++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~-~~~ 81 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE-MSA 81 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH-TTC
T ss_pred eEEEECcCCCCHHHHHHHHHHH-hCC
Confidence 3789999999999999999986 443
No 416
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.81 E-value=0.3 Score=46.60 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
-|.|.|..|+|||++++.|++.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 4678999999999999999985
No 417
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=87.78 E-value=0.35 Score=43.51 Aligned_cols=23 Identities=48% Similarity=0.642 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
..-|+|-|..|||||||++.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999875
No 418
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.66 E-value=0.22 Score=54.32 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+++|-|+.||||||++++|..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 577999999999999999999975
No 419
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.64 E-value=0.34 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 224 FCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
|.+.|++|+|||++++.|+.+ ++..
T Consensus 185 vLL~GPPGTGKTllAkAiA~e-~~~~ 209 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHH-TDCK 209 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHH-HTCE
T ss_pred eEEeCCCCCCHHHHHHHHHHh-hCCC
Confidence 478999999999999999996 5654
No 420
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.61 E-value=0.29 Score=48.25 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+..|.|.|+.|+||||+++.+++.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999999999986
No 421
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.53 E-value=0.31 Score=44.31 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|..|||||||++.|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3457899999999999999999864
No 422
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.50 E-value=0.34 Score=46.67 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+.|+|-|..|+|||||++.|..
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5678999999999999999999975
No 423
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.48 E-value=0.4 Score=46.15 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
..++|+|.|..||||+|+++.|.+. ++.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~-~g~ 37 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR-LGA 37 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH-HCT
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH-cCC
Confidence 4569999999999999999999985 443
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.43 E-value=0.38 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+..-|+|-|..|||||||++.|..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999876
No 425
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.32 E-value=0.36 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+.|+|-|+.|||||||++.|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999975
No 426
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.29 E-value=0.75 Score=49.05 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
...+.|.|+.|+||||+++.|++. ++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~-l~~ 103 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE-LGY 103 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH-TTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 357889999999999999999986 553
No 427
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.23 E-value=0.32 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRI 241 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklL 241 (539)
.++-+++|.|+.|||||||++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 36779999999999999999993
No 428
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.15 E-value=0.42 Score=42.68 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+...|+|-|..|||||||++.|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 429
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.10 E-value=0.39 Score=43.74 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+.+-|+|-|..|||||||++.|..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc
Confidence 356899999999999999999875
No 430
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=87.07 E-value=0.33 Score=47.17 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak 243 (539)
.|+|-|+.|||||||++.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999999975
No 431
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=86.95 E-value=0.29 Score=41.79 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=28.6
Q ss_pred CCeeeccCCCCchHHHHHhhcccchHHHHHH
Q 009257 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQL 164 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (539)
.+|-.+|+|||.-++.|..-||.++++|+++
T Consensus 4 ~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~ 34 (93)
T 3mab_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHcCCCCHHHHHhC
Confidence 5788899999999999999999999999954
No 432
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=86.95 E-value=0.4 Score=47.42 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.|.|+.|+||||+++.+++.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999986
No 433
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=86.83 E-value=0.29 Score=44.98 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHH-HHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQR-IAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLakl-Lak 243 (539)
.++.+-|+|-|..|||||||++. +..
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC
Confidence 45668899999999999999998 444
No 434
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=86.82 E-value=0.37 Score=46.26 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++.+.|+|-|..|||||||++.|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 5678999999999999999999865
No 435
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.80 E-value=0.31 Score=45.90 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak 243 (539)
|.|.|..||||||+++.|+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999999986
No 436
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.78 E-value=0.36 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++|.|+.||||||+++.|.-.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999743
No 437
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.78 E-value=0.41 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++|.|+.|+||||+++.+.+.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999885
No 438
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.77 E-value=0.37 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
-|.|.|+.|+||||+++.|++. ++.
T Consensus 86 ~iLL~GppGtGKT~la~ala~~-~~~ 110 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE-ANS 110 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH-HTC
T ss_pred eEEEECCCCCcHHHHHHHHHHH-hCC
Confidence 3567899999999999999986 554
No 439
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=86.76 E-value=0.47 Score=43.08 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+...|+|-|..|||||||+..+..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999875
No 440
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.74 E-value=0.38 Score=48.77 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
..-|.|.|+.|+||||+++.|++. ++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~-~~~ 143 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ-SGA 143 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH-TTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 446788999999999999999986 443
No 441
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.70 E-value=1.2 Score=43.18 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
..+++++++.|+.|+||||.+-.++..+...
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~ 55 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFA 55 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4568999999999999999888877764443
No 442
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.69 E-value=0.42 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..++|.|+-|+||||+++.+.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 48899999999999999999875
No 443
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=86.58 E-value=0.41 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
-|.+.|++|+||||+++.|++. ++..
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~-l~~~ 77 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKL-ANAP 77 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH-TTCC
T ss_pred eEEEEcCCCCCHHHHHHHHHHH-cCCC
Confidence 4789999999999999999996 5654
No 444
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.52 E-value=0.17 Score=51.58 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++ +++|-|..||||||+++.|.-
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHH
Confidence 456 999999999999999999975
No 445
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=86.42 E-value=0.38 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak 243 (539)
..-|+|-|..|||||||++.|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45679999999999999999864
No 446
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.37 E-value=0.3 Score=48.18 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
-|.|.|+.|+||||+++.|++. ++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~-~~~ 72 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKT-MDL 72 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHH-TTC
T ss_pred eEEEECCCCCcHHHHHHHHHHH-hCC
Confidence 4678999999999999999985 554
No 447
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=86.35 E-value=0.42 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++..|+|-|..|||||||++.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 5678999999999999999999987
No 448
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=86.33 E-value=0.71 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.....|+|-|..|||||||++.|..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHC
Confidence 3456899999999999999999975
No 449
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.31 E-value=0.41 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
-|.+.|++|+||||+++.|++. ++
T Consensus 65 ~iLl~GppGtGKT~la~ala~~-l~ 88 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQE-LG 88 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HC
T ss_pred eEEEECCCcCCHHHHHHHHHHH-hC
Confidence 4688999999999999999996 56
No 450
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=86.30 E-value=0.42 Score=46.55 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.....|+|-|..|||||||++.|...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 34568999999999999999999753
No 451
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=86.30 E-value=0.35 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
.|.|-|++|+||||++..|++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999986
No 452
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.22 E-value=0.43 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
+.|.|+.|+||||+++.+++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHH
Confidence 789999999999999999986
No 453
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=86.13 E-value=0.2 Score=45.81 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+.+-|+|-|..|||||||++.|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998864
No 454
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=86.12 E-value=1.3 Score=41.63 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIA 242 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLa 242 (539)
+..+++.|+.||||||++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3478999999999999876653
No 455
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.97 E-value=0.49 Score=43.79 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.++.++.|.|.+|+|||||+-.++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3577999999999999999977653
No 456
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=85.97 E-value=0.29 Score=43.06 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=11.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
...-|+|-|..|||||||++.|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 356799999999999999998875
No 457
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=85.92 E-value=0.16 Score=58.22 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=27.3
Q ss_pred hhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHH
Q 009257 199 IKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFL 238 (539)
Q Consensus 199 i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLa 238 (539)
|+-+...+|+.+|.+ =.++.+++|+|..|||||||+
T Consensus 18 i~gar~hNLkni~v~----iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 18 VRGARQHNLKDISVK----VPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEECSTTCCSEEEE----EESSSEEEEESSTTSSHHHHH
T ss_pred EeeccccCCCCeeEE----ecCCCEEEEECCCCCCHHHHH
Confidence 566665666666542 146789999999999999998
No 458
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.92 E-value=0.41 Score=55.88 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++-+++|-|+.|||||||++.|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999984
No 459
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.86 E-value=0.47 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
+.|.|+.|+||||+++.+++.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999999986
No 460
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.70 E-value=0.24 Score=43.41 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
|.|.|..|+|||++++.|.+.
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 678999999999999999864
No 461
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=85.68 E-value=0.81 Score=47.21 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhccCCce
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLV 252 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L~a~~~~ 252 (539)
++..+.|.|+.|+|||||+..++.. .+....+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-~G~~Vly 153 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-LGGKDKY 153 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-HHTTSCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-CCCCEEE
Confidence 4567889999999999999999875 4544333
No 462
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.67 E-value=0.51 Score=50.42 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
.=|.+.|++|+|||++++.|+.+ ++..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e-~~~~ 243 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ-TSAT 243 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH-HTCE
T ss_pred CCCceECCCCchHHHHHHHHHHH-hCCC
Confidence 35688999999999999999996 5654
No 463
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.65 E-value=0.31 Score=47.46 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
.|.|.|+.|+||||+++.+++. ++.
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~-~~~ 64 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHE-LGV 64 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHH-HTC
T ss_pred cEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 4678999999999999999986 453
No 464
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.65 E-value=0.44 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
=|.+.|++|+|||++++.|+.+ ++..
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e-~~~~ 270 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR-TDAT 270 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH-HTCE
T ss_pred ceEeeCCCCCcHHHHHHHHHhc-cCCC
Confidence 4578999999999999999996 5654
No 465
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.45 E-value=1.6 Score=46.13 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.+|+|.|..||||||++..|+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999985
No 466
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.44 E-value=0.5 Score=44.23 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+-+.+|.|+.||||||++..|.-.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358899999999999999999753
No 467
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.43 E-value=0.27 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009257 224 FCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~ 244 (539)
|.|.|+.|+||||+++.|++.
T Consensus 48 vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 789999999999999999985
No 468
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.42 E-value=0.46 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
..-+.|.|+.|+||||+++.|++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999999999986
No 469
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.40 E-value=0.47 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 222 ITFCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
.-+.|.|+.|+||||+++.|++. ++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~-~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY-AN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-TT
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-hC
Confidence 35789999999999999999986 44
No 470
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=85.27 E-value=0.48 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIA 242 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLa 242 (539)
..-|+|-|..|+|||||++.|.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 4679999999999999999874
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.17 E-value=0.65 Score=49.09 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+|+|.|..||||||++..|+..
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999985
No 472
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.10 E-value=0.52 Score=45.49 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|+|||||++.|..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3467899999999999999999975
No 473
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=85.00 E-value=0.61 Score=43.06 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
...-|+|-|..|||||||++.|..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHhc
Confidence 346799999999999999999986
No 474
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.96 E-value=0.6 Score=47.58 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=31.8
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 191 HAESITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+.|..+|..++.. .++..|.|.|++|+|||++++.+.+.
T Consensus 28 E~~~i~~~L~~~i~~-------------~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 28 DFTRIFLPIYDSLMS-------------SQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHHHHHHHHHHHT-------------TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455667778777721 34556788999999999999999986
No 475
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=84.73 E-value=0.31 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRI 241 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklL 241 (539)
++-+++|-|+.|||||||++.|
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTT
T ss_pred CCCEEEEEeeCCCCHHHHHHHH
Confidence 5779999999999999999764
No 476
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.62 E-value=0.65 Score=46.38 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANET 245 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~ 245 (539)
+.-|.|.|+.|+|||+++..|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999864
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.52 E-value=0.55 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++-+++|.|..|||||||++.|+..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999874
No 478
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=84.50 E-value=0.53 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.+++|.|+.|+||||+++.|+-.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 35679999999999999999999863
No 479
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=84.46 E-value=0.25 Score=57.18 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=26.6
Q ss_pred hhhhhhhhhcCCCCCCCCCCCCCeEEEEEcCCCCcHHHHH
Q 009257 199 IKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFL 238 (539)
Q Consensus 199 i~~~~~~~~~~~~~~~~~~~~K~m~IaIEG~IGSGKSTLa 238 (539)
|+-+...+|+.+|.+ -.++.+++|+|..|||||||+
T Consensus 6 i~gar~hNLkni~~~----ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 6 VKGARVHNLKNITVR----IPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp EESBCSTTCCSBCCE----EETTSEEEEEESTTSSSHHHH
T ss_pred EeCccccccCcceec----cCCCcEEEEECCCCCcHHHHH
Confidence 445555666665542 246779999999999999998
No 480
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=84.33 E-value=0.23 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=6.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+..-|+|-|..|||||||++.|..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEEC----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998875
No 481
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=84.30 E-value=0.53 Score=46.98 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..+|+|-|..|||||||++.|..
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556899999999999999999975
No 482
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.17 E-value=0.59 Score=47.66 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a 248 (539)
..-|.|.|+.|+|||++++.|++. ++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~-~~~ 174 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE-SNA 174 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH-TTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHh-hcC
Confidence 346789999999999999999986 454
No 483
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.09 E-value=0.45 Score=54.34 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 009257 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~~L~a~ 249 (539)
+.=|.+.|+.|+||||+++.|+++ ++..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e-lg~~ 265 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE-TGAF 265 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT-TTCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 456789999999999999999986 5654
No 484
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.08 E-value=0.71 Score=47.74 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.++.++.|.|+.|+|||||+..|+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999875
No 485
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.02 E-value=0.52 Score=56.29 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
++..++|-|+.||||||++++|..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 578999999999999999999976
No 486
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.01 E-value=0.59 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.-|.|.|+.|+||||+++.|++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999986
No 487
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.87 E-value=0.1 Score=50.63 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak~ 244 (539)
+++|-|+.||||||++++|+-.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5688999999999999999874
No 488
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=83.78 E-value=0.61 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEE--EcCCCCcHHHHHHHHHHH
Q 009257 223 TFCV--EGNISVGKTTFLQRIANE 244 (539)
Q Consensus 223 ~IaI--EG~IGSGKSTLaklLak~ 244 (539)
.+.| .|+.|+||||+++.+.+.
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHH
Confidence 4555 999999999999999875
No 489
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=83.77 E-value=0.76 Score=43.53 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=21.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+++..-|+|-|..|+|||||+..+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHh
Confidence 46677899999999999999999875
No 490
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.74 E-value=0.52 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009257 222 ITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 222 m~IaIEG~IGSGKSTLaklLak 243 (539)
.-|+|-|..|||||||++.|..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHhC
Confidence 4579999999999999999975
No 491
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=83.53 E-value=0.41 Score=52.55 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009257 223 TFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 223 ~IaIEG~IGSGKSTLaklLak 243 (539)
.|+|-|..||||||+++.|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS
T ss_pred eEEEECCCCChHHHHHHHHhC
Confidence 499999999999999999986
No 492
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.48 E-value=0.81 Score=43.54 Aligned_cols=25 Identities=12% Similarity=0.406 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
.+.=|.|.|..|+||||++-.|.++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4667899999999999999999874
No 493
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=83.41 E-value=0.67 Score=46.92 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+...|+|-|..|||||||++.|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999975
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=83.40 E-value=0.62 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhc
Q 009257 224 FCVEGNISVGKTTFLQRIANETLE 247 (539)
Q Consensus 224 IaIEG~IGSGKSTLaklLak~~L~ 247 (539)
|.|.|+.|+||||+++.|+.. ++
T Consensus 67 vLL~GppGtGKTtLaraIa~~-~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE-AR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH-TT
T ss_pred EEEECCCCCCHHHHHHHHHHH-hC
Confidence 789999999999999999985 44
No 495
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=83.39 E-value=0.6 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 221 RITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 221 ~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
+.+++|.|+.|+||||+++.|+-.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 679999999999999999999863
No 496
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.39 E-value=0.66 Score=47.46 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANE 244 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~ 244 (539)
++.++.|.|..|+|||||+..++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999888764
No 497
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=83.37 E-value=0.61 Score=48.89 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 218 ~~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.|+...|+|-|..|||||||++.|..
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEE
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 47778999999999999999999965
No 498
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=83.85 E-value=0.23 Score=45.01 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 219 ~K~m~IaIEG~IGSGKSTLaklLak 243 (539)
.+..-|+|-|..|||||||++.|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4567899999999999999988865
No 499
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=83.07 E-value=0.79 Score=43.11 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 009257 220 KRITFCVEGNISVGKTTFLQRIAN 243 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak 243 (539)
+...|+|-|..|||||||+..+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 446799999999999999998863
No 500
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.03 E-value=1 Score=45.83 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 009257 220 KRITFCVEGNISVGKTTFLQRIANETL 246 (539)
Q Consensus 220 K~m~IaIEG~IGSGKSTLaklLak~~L 246 (539)
.+..++|-|+.||||||+++.|.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 344568899999999999999987543
Done!