Query 009258
Match_columns 539
No_of_seqs 330 out of 2112
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 22:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244 Predicted transcriptio 99.4 2.4E-14 5.2E-19 140.5 1.2 98 387-487 225-331 (336)
2 KOG0956 PHD finger protein AF1 99.2 1.5E-11 3.2E-16 133.4 5.3 190 271-485 7-204 (900)
3 KOG4443 Putative transcription 99.0 9.1E-11 2E-15 127.6 2.3 99 385-486 17-117 (694)
4 KOG0955 PHD finger protein BR1 99.0 2.7E-10 5.8E-15 131.9 4.4 144 267-423 217-362 (1051)
5 KOG0957 PHD finger protein [Ge 99.0 2.2E-10 4.7E-15 120.7 2.7 139 271-421 121-272 (707)
6 COG5141 PHD zinc finger-contai 98.9 3E-10 6.6E-15 119.5 1.0 140 270-423 194-335 (669)
7 KOG0954 PHD finger protein [Ge 98.9 4.2E-10 9.2E-15 123.3 2.1 140 268-423 270-412 (893)
8 KOG4299 PHD Zn-finger protein 98.9 2.2E-09 4.8E-14 116.8 6.5 48 439-486 255-304 (613)
9 KOG1512 PHD Zn-finger protein 98.9 6.4E-10 1.4E-14 110.2 1.8 95 386-485 258-361 (381)
10 KOG4299 PHD Zn-finger protein 98.8 6.2E-09 1.3E-13 113.4 7.4 51 269-319 253-305 (613)
11 cd05501 Bromo_SP100C_like Brom 98.6 1E-07 2.2E-12 83.0 6.1 90 139-231 5-99 (102)
12 PF00628 PHD: PHD-finger; Int 98.6 1.3E-08 2.7E-13 77.3 0.1 48 271-318 1-50 (51)
13 cd05502 Bromo_tif1_like Bromod 98.6 1.2E-07 2.6E-12 83.7 6.3 96 136-233 4-108 (109)
14 cd05505 Bromo_WSTF_like Bromod 98.5 1.2E-07 2.5E-12 82.2 5.8 86 138-226 2-95 (97)
15 cd05503 Bromo_BAZ2A_B_like Bro 98.5 1E-07 2.2E-12 82.5 5.2 86 139-226 3-95 (97)
16 KOG1244 Predicted transcriptio 98.5 2.8E-08 6E-13 98.3 1.9 48 271-318 283-330 (336)
17 PF00628 PHD: PHD-finger; Int 98.5 1.9E-08 4E-13 76.4 -0.3 47 440-486 2-50 (51)
18 cd05509 Bromo_gcn5_like Bromod 98.5 2.1E-07 4.5E-12 80.9 6.0 91 138-230 3-100 (101)
19 cd05496 Bromo_WDR9_II Bromodom 98.4 3.5E-07 7.6E-12 82.0 6.4 94 137-233 6-108 (119)
20 cd05504 Bromo_Acf1_like Bromod 98.4 2.5E-07 5.4E-12 82.5 5.4 93 135-230 11-111 (115)
21 cd05495 Bromo_cbp_like Bromodo 98.4 3.2E-07 6.9E-12 81.0 5.7 90 138-229 5-104 (108)
22 KOG0825 PHD Zn-finger protein 98.4 9.5E-08 2.1E-12 105.5 1.8 49 438-486 216-265 (1134)
23 cd05497 Bromo_Brdt_I_like Brom 98.4 4.6E-07 1E-11 79.8 5.4 84 142-228 11-104 (107)
24 KOG0825 PHD Zn-finger protein 98.4 1.2E-07 2.6E-12 104.7 1.8 53 268-320 214-267 (1134)
25 cd05506 Bromo_plant1 Bromodoma 98.4 4.8E-07 1E-11 78.3 5.0 86 138-226 2-97 (99)
26 cd05498 Bromo_Brdt_II_like Bro 98.3 6.2E-07 1.3E-11 78.1 5.2 87 138-226 2-100 (102)
27 cd05508 Bromo_RACK7 Bromodomai 98.3 9.5E-07 2.1E-11 76.8 5.7 60 164-225 34-96 (99)
28 smart00249 PHD PHD zinc finger 98.3 5.1E-07 1.1E-11 66.1 3.4 45 440-484 2-47 (47)
29 cd05499 Bromo_BDF1_2_II Bromod 98.3 6.4E-07 1.4E-11 78.1 4.5 86 139-226 3-100 (102)
30 cd05507 Bromo_brd8_like Bromod 98.3 1.1E-06 2.4E-11 76.9 6.0 87 137-226 4-98 (104)
31 smart00249 PHD PHD zinc finger 98.3 5E-07 1.1E-11 66.2 3.2 46 271-316 1-47 (47)
32 cd05500 Bromo_BDF1_2_I Bromodo 98.3 1.3E-06 2.8E-11 76.3 5.7 87 137-226 5-101 (103)
33 cd05516 Bromo_SNF2L2 Bromodoma 98.3 1.9E-06 4.2E-11 75.8 6.6 90 138-229 3-105 (107)
34 PF00439 Bromodomain: Bromodom 98.2 9.7E-07 2.1E-11 73.5 4.2 76 141-218 1-83 (84)
35 cd05513 Bromo_brd7_like Bromod 98.2 1.2E-06 2.6E-11 75.9 4.7 82 139-223 4-93 (98)
36 KOG1474 Transcription initiati 98.2 1.4E-06 3E-11 98.8 5.9 97 138-237 224-330 (640)
37 cd05515 Bromo_polybromo_V Brom 98.2 2.9E-06 6.3E-11 74.4 6.4 87 138-226 2-101 (105)
38 cd05528 Bromo_AAA Bromodomain; 98.2 2E-06 4.3E-11 76.4 5.2 89 141-231 8-107 (112)
39 cd05510 Bromo_SPT7_like Bromod 98.2 2.9E-06 6.4E-11 75.3 6.1 90 137-228 8-106 (112)
40 KOG0383 Predicted helicase [Ge 98.2 1.1E-06 2.4E-11 98.8 4.1 47 268-317 46-92 (696)
41 cd05512 Bromo_brd1_like Bromod 98.2 2.5E-06 5.3E-11 74.0 5.0 84 139-225 4-95 (98)
42 smart00297 BROMO bromo domain. 98.2 3.7E-06 7.9E-11 73.2 6.0 63 165-229 40-105 (107)
43 cd05524 Bromo_polybromo_I Brom 98.1 3.8E-06 8.3E-11 74.7 5.7 68 165-234 41-111 (113)
44 cd04369 Bromodomain Bromodomai 98.1 4.7E-06 1E-10 70.4 5.4 85 139-225 3-96 (99)
45 cd05519 Bromo_SNF2 Bromodomain 98.1 7.4E-06 1.6E-10 71.6 6.4 86 139-226 3-101 (103)
46 cd05511 Bromo_TFIID Bromodomai 98.0 9.8E-06 2.1E-10 72.0 6.4 89 141-231 5-100 (112)
47 KOG0957 PHD finger protein [Ge 98.0 5.4E-06 1.2E-10 88.2 5.0 49 271-319 546-598 (707)
48 KOG0383 Predicted helicase [Ge 98.0 3.2E-06 6.8E-11 95.3 3.0 44 439-485 49-92 (696)
49 cd05518 Bromo_polybromo_IV Bro 98.0 9.3E-06 2E-10 71.1 5.0 59 165-225 39-100 (103)
50 cd05525 Bromo_ASH1 Bromodomain 98.0 9.9E-06 2.1E-10 71.3 5.2 59 165-225 41-102 (106)
51 KOG4443 Putative transcription 98.0 3.9E-06 8.4E-11 92.2 2.9 47 271-317 70-116 (694)
52 cd05520 Bromo_polybromo_III Br 98.0 1.1E-05 2.3E-10 70.7 5.1 59 165-225 39-100 (103)
53 KOG1973 Chromatin remodeling p 97.9 3.6E-06 7.8E-11 86.1 2.3 46 268-319 220-268 (274)
54 cd05529 Bromo_WDR9_I_like Brom 97.9 1.4E-05 3E-10 72.7 5.6 64 163-228 59-125 (128)
55 cd05492 Bromo_ZMYND11 Bromodom 97.9 1.6E-05 3.5E-10 70.2 5.7 59 163-223 37-98 (109)
56 cd04718 BAH_plant_2 BAH, or Br 97.9 5.2E-06 1.1E-10 76.5 2.5 28 293-320 1-28 (148)
57 cd05517 Bromo_polybromo_II Bro 97.9 2.2E-05 4.7E-10 68.7 6.2 59 165-225 39-100 (103)
58 KOG1512 PHD Zn-finger protein 97.9 4.1E-06 8.9E-11 83.6 1.8 45 271-317 316-361 (381)
59 cd04718 BAH_plant_2 BAH, or Br 97.8 8.8E-06 1.9E-10 75.1 2.4 26 461-486 1-26 (148)
60 cd05522 Bromo_Rsc1_2_II Bromod 97.7 5.5E-05 1.2E-09 66.3 5.1 60 165-226 40-102 (104)
61 PF15446 zf-PHD-like: PHD/FYVE 97.5 0.0001 2.2E-09 69.0 3.7 65 272-336 2-82 (175)
62 cd05521 Bromo_Rsc1_2_I Bromodo 97.4 0.00019 4.1E-09 63.2 4.9 57 165-225 40-99 (106)
63 cd05491 Bromo_TBP7_like Bromod 97.4 0.0002 4.4E-09 63.7 4.7 50 170-220 61-111 (119)
64 KOG1973 Chromatin remodeling p 97.4 6.2E-05 1.3E-09 77.1 1.5 39 447-487 227-268 (274)
65 COG5034 TNG2 Chromatin remodel 97.4 7.1E-05 1.5E-09 74.1 1.4 36 281-318 231-269 (271)
66 KOG4323 Polycomb-like PHD Zn-f 97.3 0.00028 6E-09 76.1 5.6 47 444-490 177-227 (464)
67 KOG1473 Nucleosome remodeling 97.2 9.3E-05 2E-09 85.4 0.9 45 271-318 346-390 (1414)
68 KOG1245 Chromatin remodeling c 97.2 8E-05 1.7E-09 90.4 0.2 51 439-489 1110-1160(1404)
69 KOG1245 Chromatin remodeling c 97.2 7E-05 1.5E-09 90.8 -0.7 52 269-320 1108-1159(1404)
70 PF13831 PHD_2: PHD-finger; PD 96.9 0.00014 3E-09 51.5 -1.1 34 282-317 2-36 (36)
71 cd05526 Bromo_polybromo_VI Bro 96.8 0.0023 5E-08 56.7 5.8 63 167-230 41-106 (110)
72 COG5034 TNG2 Chromatin remodel 96.8 0.00053 1.1E-08 68.1 1.5 36 449-486 231-269 (271)
73 KOG0955 PHD finger protein BR1 96.4 0.0014 3E-08 77.2 1.6 49 439-489 221-271 (1051)
74 PF13832 zf-HC5HC2H_2: PHD-zin 96.0 0.0051 1.1E-07 54.0 2.8 87 327-424 2-88 (110)
75 COG5076 Transcription factor i 95.6 0.008 1.7E-07 64.2 3.0 73 163-237 179-254 (371)
76 KOG4323 Polycomb-like PHD Zn-f 95.2 0.0064 1.4E-07 65.8 0.7 50 271-320 170-225 (464)
77 KOG0956 PHD finger protein AF1 93.6 0.03 6.5E-07 62.5 1.3 44 440-485 8-55 (900)
78 PF13831 PHD_2: PHD-finger; PD 93.2 0.011 2.5E-07 41.8 -1.8 34 450-485 2-36 (36)
79 KOG0954 PHD finger protein [Ge 92.6 0.044 9.6E-07 61.7 0.8 45 439-485 273-319 (893)
80 COG5141 PHD zinc finger-contai 92.3 0.055 1.2E-06 58.4 1.0 45 439-485 195-241 (669)
81 PF15446 zf-PHD-like: PHD/FYVE 91.0 0.048 1.1E-06 51.4 -0.9 31 440-470 2-35 (175)
82 KOG1473 Nucleosome remodeling 90.2 0.15 3.3E-06 60.0 1.9 44 439-485 346-389 (1414)
83 KOG1246 DNA-binding protein ju 87.8 0.39 8.4E-06 57.3 3.2 50 269-319 155-204 (904)
84 KOG1246 DNA-binding protein ju 84.6 0.72 1.6E-05 55.1 3.2 47 439-486 157-203 (904)
85 PF14446 Prok-RING_1: Prokaryo 84.5 0.6 1.3E-05 36.1 1.6 33 269-301 5-38 (54)
86 PF14446 Prok-RING_1: Prokaryo 83.8 0.53 1.2E-05 36.4 1.1 32 438-469 6-38 (54)
87 PF12861 zf-Apc11: Anaphase-pr 82.1 0.49 1.1E-05 40.0 0.4 44 442-487 37-80 (85)
88 PF13832 zf-HC5HC2H_2: PHD-zin 80.4 1.6 3.4E-05 38.2 3.0 72 388-469 2-87 (110)
89 cd05494 Bromodomain_1 Bromodom 71.4 1.2 2.6E-05 39.7 -0.1 65 140-205 7-83 (114)
90 PF11793 FANCL_C: FANCL C-term 68.6 0.67 1.4E-05 37.7 -2.2 48 271-318 4-63 (70)
91 PF07649 C1_3: C1-like domain; 63.2 2.4 5.3E-05 28.4 0.0 28 439-466 2-29 (30)
92 KOG4628 Predicted E3 ubiquitin 63.1 7.2 0.00016 41.4 3.5 48 270-320 230-277 (348)
93 PF11793 FANCL_C: FANCL C-term 62.9 2.3 5E-05 34.5 -0.1 49 440-488 5-65 (70)
94 PF13901 DUF4206: Domain of un 61.8 5.3 0.00011 39.2 2.1 39 439-486 154-197 (202)
95 PF12861 zf-Apc11: Anaphase-pr 60.6 3.6 7.8E-05 34.9 0.6 46 272-319 35-80 (85)
96 PF13639 zf-RING_2: Ring finge 59.6 0.79 1.7E-05 33.3 -3.1 42 271-317 2-44 (44)
97 PF15227 zf-C3HC4_4: zinc fing 57.6 3 6.4E-05 30.4 -0.3 42 389-438 1-42 (42)
98 PF13771 zf-HC5HC2H: PHD-like 53.5 5.3 0.00012 33.4 0.5 37 383-424 33-69 (90)
99 PF07649 C1_3: C1-like domain; 53.0 4.9 0.00011 26.9 0.2 29 271-299 2-30 (30)
100 KOG1472 Histone acetyltransfer 50.4 8.5 0.00018 44.5 1.7 42 169-211 642-683 (720)
101 KOG1080 Histone H3 (Lys4) meth 49.1 29 0.00063 41.9 5.8 83 266-353 570-655 (1005)
102 PF05191 ADK_lid: Adenylate ki 47.4 11 0.00023 26.8 1.2 27 454-486 3-29 (36)
103 PF13771 zf-HC5HC2H: PHD-like 47.2 9.1 0.0002 32.0 1.0 29 270-300 37-67 (90)
104 PF00641 zf-RanBP: Zn-finger i 47.0 8.8 0.00019 25.6 0.7 27 308-335 2-28 (30)
105 PF13901 DUF4206: Domain of un 46.5 16 0.00034 35.8 2.7 42 268-318 151-197 (202)
106 KOG1734 Predicted RING-contain 44.8 6.9 0.00015 39.9 -0.1 60 439-500 226-292 (328)
107 PF10497 zf-4CXXC_R1: Zinc-fin 44.6 12 0.00025 33.0 1.3 61 269-336 7-81 (105)
108 PF07227 DUF1423: Protein of u 38.5 16 0.00035 39.8 1.5 53 434-486 125-191 (446)
109 smart00547 ZnF_RBZ Zinc finger 38.5 18 0.00038 23.1 1.1 24 309-333 1-24 (26)
110 PF07227 DUF1423: Protein of u 37.8 23 0.00049 38.8 2.4 55 265-319 124-192 (446)
111 KOG2932 E3 ubiquitin ligase in 37.4 26 0.00056 36.5 2.6 29 463-494 111-139 (389)
112 cd05493 Bromo_ALL-1 Bromodomai 36.9 27 0.00058 32.1 2.4 59 144-206 31-91 (131)
113 KOG1632 Uncharacterized PHD Zn 35.8 23 0.00049 37.7 2.0 37 451-487 74-113 (345)
114 PF03107 C1_2: C1 domain; Int 35.5 27 0.00059 23.4 1.7 29 439-467 2-30 (30)
115 KOG1701 Focal adhesion adaptor 35.4 12 0.00026 40.5 -0.2 93 386-486 334-460 (468)
116 cd00162 RING RING-finger (Real 35.2 12 0.00026 25.9 -0.1 41 272-317 2-42 (45)
117 KOG3970 Predicted E3 ubiquitin 34.1 4.1 9E-05 40.3 -3.5 45 439-487 52-103 (299)
118 KOG1472 Histone acetyltransfer 33.5 18 0.00039 41.9 0.8 45 163-209 317-361 (720)
119 COG1773 Rubredoxin [Energy pro 32.1 38 0.00082 26.4 2.2 9 478-486 36-44 (55)
120 KOG4628 Predicted E3 ubiquitin 32.0 24 0.00051 37.6 1.4 46 439-487 231-276 (348)
121 PF12773 DZR: Double zinc ribb 29.8 55 0.0012 24.1 2.7 10 309-318 28-37 (50)
122 smart00744 RINGv The RING-vari 29.6 19 0.00041 27.1 0.2 33 388-423 1-35 (49)
123 KOG2879 Predicted E3 ubiquitin 29.1 93 0.002 32.1 4.9 45 271-320 241-286 (298)
124 PF14634 zf-RING_5: zinc-RING 28.6 23 0.0005 25.7 0.5 23 389-411 2-25 (44)
125 PF00130 C1_1: Phorbol esters/ 27.8 35 0.00077 25.4 1.4 31 439-469 13-45 (53)
126 COG1107 Archaea-specific RecJ- 27.7 52 0.0011 37.3 3.1 41 432-486 53-103 (715)
127 KOG2114 Vacuolar assembly/sort 26.0 50 0.0011 38.9 2.7 54 439-501 842-895 (933)
128 cd00730 rubredoxin Rubredoxin; 25.1 77 0.0017 24.1 2.8 33 454-487 3-43 (50)
129 KOG3850 Predicted membrane pro 25.1 52 0.0011 35.3 2.5 22 34-55 423-444 (455)
130 PF00097 zf-C3HC4: Zinc finger 24.9 14 0.00029 26.1 -1.3 28 389-423 1-28 (41)
131 PF14991 MLANA: Protein melan- 24.3 26 0.00056 31.3 0.0 30 20-49 16-45 (118)
132 PF05502 Dynactin_p62: Dynacti 24.3 43 0.00093 37.3 1.8 31 283-318 4-34 (483)
133 KOG1827 Chromatin remodeling c 24.1 80 0.0017 36.2 3.8 60 169-229 94-156 (629)
134 PF12678 zf-rbx1: RING-H2 zinc 23.9 25 0.00055 28.6 -0.1 26 288-317 48-73 (73)
135 KOG1952 Transcription factor N 23.3 34 0.00073 40.2 0.8 67 269-336 191-262 (950)
136 PRK14559 putative protein seri 23.1 68 0.0015 37.1 3.2 47 271-319 3-50 (645)
137 KOG1474 Transcription initiati 22.3 33 0.00072 39.5 0.5 58 165-224 27-87 (640)
138 PF00301 Rubredoxin: Rubredoxi 22.3 40 0.00087 25.3 0.7 9 478-486 34-42 (47)
139 PF00130 C1_1: Phorbol esters/ 22.2 66 0.0014 23.9 1.9 31 270-300 12-44 (53)
140 KOG3612 PHD Zn-finger protein 22.1 63 0.0014 36.2 2.5 48 429-485 57-106 (588)
141 PHA02825 LAP/PHD finger-like p 21.0 50 0.0011 31.3 1.2 65 386-483 8-74 (162)
142 KOG3612 PHD Zn-finger protein 21.0 80 0.0017 35.4 3.0 45 271-319 62-108 (588)
143 PF08746 zf-RING-like: RING-li 20.9 20 0.00044 26.2 -1.1 32 451-484 10-43 (43)
144 PHA02689 ORF051 putative membr 20.1 84 0.0018 28.6 2.4 26 5-31 15-40 (128)
No 1
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.43 E-value=2.4e-14 Score=140.46 Aligned_cols=98 Identities=32% Similarity=0.874 Sum_probs=79.9
Q ss_pred ccccccCccc--cc---CCCcccccCCcccCCccccccccCccc---ccCCCCcccCccc-ccccccccCCCCCceeccC
Q 009258 387 NLCKICGRKV--EE---SSDKFRSCEHAFCYSKFYHERCLTPKQ---LKRYGPCWFCPSC-LCRACLTDKDDEKIVMCDG 457 (539)
Q Consensus 387 ~~C~iCgs~~--~~---~~~~ll~C~~~~C~~k~yH~~Cl~~~~---~~~~~~~W~Cp~C-~C~~C~~~~~~~~ll~Cd~ 457 (539)
+.|-.|.... +. -.+.++.|.. | +..-|++||.-+. ...+..+|+|.+| .|.+|+.+.+++++|+||.
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsd--c-grsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfcdd 301 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSD--C-GRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCDD 301 (336)
T ss_pred cccceeccccccccccCCchhhcchhh--c-CCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEeecc
Confidence 4666664321 11 1568899984 8 8999999997532 2234568999999 7999999999999999999
Q ss_pred CCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 458 CDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 458 C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
|+++||||||.||+..+|.|.|-|.-|...
T Consensus 302 cdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 302 CDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred cCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 999999999999999999999999999753
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.19 E-value=1.5e-11 Score=133.41 Aligned_cols=190 Identities=16% Similarity=0.387 Sum_probs=131.4
Q ss_pred ccccccc--ccCCCCceeeC--cCCCcCcccccCCCCCCCCCCCcccCCccccCCCCCCcccccccccCCCCcccccccc
Q 009258 271 TCRQCEE--KAGEKDGLVCD--SCEEMYHLSCIEPAFKDIPPKSWYCARCTAKGFGSPHENCIVCERMNANAPRIQINQA 346 (539)
Q Consensus 271 ~C~~C~~--~~~~~~ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~~~~~R~~~~~~ 346 (539)
-|.+|.+ ...++.|+.|| .|.-+.|..|+ ++-++|+|.|||..|+.... ....+|-+|+--.++.+|+....|
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCesqer-aarvrCeLCP~kdGALKkTDn~GW 83 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCESQER-AARVRCELCPHKDGALKKTDNGGW 83 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhhhhh-hccceeecccCcccceecccCCCc
Confidence 4889976 23466799999 59999999999 99999999999999987553 234689999999999999999999
Q ss_pred CCCCCCCCCCCCccccccccccccCCCCCCCCCCCccccCccccccCccccc---CCCcccccCCcccCCccccccccCc
Q 009258 347 GDEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEE---SSDKFRSCEHAFCYSKFYHERCLTP 423 (539)
Q Consensus 347 ~~~~~~~~~e~~~e~e~~s~~~~e~~~~~~~~gv~~~~~~~~C~iCgs~~~~---~~~~ll~C~~~~C~~k~yH~~Cl~~ 423 (539)
.|.+|.--+ .|..-.....++ +. --..|+.+++...|+||...+.. ..+..+.|....| ...||+.|...
T Consensus 84 AHVVCALYI---PEVrFgNV~TME--PI-iLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~C-kqaFHVTCAQ~ 156 (900)
T KOG0956|consen 84 AHVVCALYI---PEVRFGNVHTME--PI-ILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGC-KQAFHVTCAQR 156 (900)
T ss_pred eEEEEEeec---cceeeccccccc--ce-eeccCchhhhcceeeeecccCCccccccccceecccccc-hhhhhhhHhhh
Confidence 999886543 222211222221 11 11356778888999999765332 2678899998889 78899999875
Q ss_pred ccccCCCCcccCcccccccccccC-CCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCc
Q 009258 424 KQLKRYGPCWFCPSCLCRACLTDK-DDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCD 485 (539)
Q Consensus 424 ~~~~~~~~~W~Cp~C~C~~C~~~~-~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~ 485 (539)
.-+ .|.+.+ ..+.+-.|.+|...|---=-.|..+.+|.++-.=..|.
T Consensus 157 ~GL---------------LCEE~gn~~dNVKYCGYCk~HfsKlkk~~~~k~ipsy~~s~s~s~ 204 (900)
T KOG0956|consen 157 AGL---------------LCEEEGNISDNVKYCGYCKYHFSKLKKSPAIKVIPSYKPSQSASP 204 (900)
T ss_pred hcc---------------ceeccccccccceechhHHHHHHHhhcCCCcccCCCCccccccCC
Confidence 422 244432 35678889999643322223345566666554444443
No 3
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=99.02 E-value=9.1e-11 Score=127.60 Aligned_cols=99 Identities=36% Similarity=0.978 Sum_probs=83.6
Q ss_pred cCccccccCcccccCCCcccccCCcccCCccccccccCcccccC-CCCcccCccc-ccccccccCCCCCceeccCCCCcc
Q 009258 385 SANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPKQLKR-YGPCWFCPSC-LCRACLTDKDDEKIVMCDGCDQGY 462 (539)
Q Consensus 385 ~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~~~~~~-~~~~W~Cp~C-~C~~C~~~~~~~~ll~Cd~C~~~y 462 (539)
...+|++|+..+....+.++.|.. | ++.||..|++.-.... -..-|.||.| .|..|+..+|..+.++|+.|+-+|
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~--c-~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvsy 93 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSD--C-GQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVSY 93 (694)
T ss_pred hhhhhhhhccccccccCcchhhhh--h-cccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCcccccccccccccc
Confidence 346899998877765677999985 7 8999999999632211 1123999999 899999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCcccCCCcc
Q 009258 463 HLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 463 H~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
|.||+.||++.+|.+.|+|+.|..
T Consensus 94 h~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 94 HCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred cccccCCccccccCcccccHHHHh
Confidence 999999999999999999998853
No 4
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.98 E-value=2.7e-10 Score=131.89 Aligned_cols=144 Identities=17% Similarity=0.340 Sum_probs=109.8
Q ss_pred CCcccccccccccC--CCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccCCCCCCcccccccccCCCCcccccc
Q 009258 267 YKVHTCRQCEEKAG--EKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKGFGSPHENCIVCERMNANAPRIQIN 344 (539)
Q Consensus 267 ~~~~~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~~~~~R~~~~ 344 (539)
..+.+|.+|.+..- .+.+|+||+|+.++|++|+ +.+.+|+|.|+|..|...... ..+|..|+..+++.+++..+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cy--gi~~ipeg~WlCr~Cl~s~~~--~v~c~~cp~~~gAFkqt~dg 292 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECY--GIPFIPEGQWLCRRCLQSPQR--PVRCLLCPSKGGAFKQTDDG 292 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhcc--CCCCCCCCcEeehhhccCcCc--ccceEeccCCCCcceeccCC
Confidence 34568999988543 4789999999999999999 688999999999999876642 36899999999999999999
Q ss_pred ccCCCCCCCCCCCCccccccccccccCCCCCCCCCCCccccCccccccCcccccCCCcccccCCcccCCccccccccCc
Q 009258 345 QAGDEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP 423 (539)
Q Consensus 345 ~~~~~~~~~~~e~~~e~e~~s~~~~e~~~~~~~~gv~~~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~ 423 (539)
+|.|-+|..++....-..+ .+.+ ..-..+.++..++.-.|.+|+... -+..+.|....| ..+||..|-..
T Consensus 293 rw~Hv~caiwipev~F~nt--~~~E---~I~~i~~i~~aRwkL~cy~cK~~~---~gaciqcs~~~c-~~a~hvtca~~ 362 (1051)
T KOG0955|consen 293 RWAHVVCAIWIPEVSFANT--VFLE---PIDSIENIPPARWKLTCYICKQKG---LGACIQCSKANC-YTAFHVTCARR 362 (1051)
T ss_pred ceeeeehhhcccccccccc--hhhc---cccchhcCcHhhhhceeeeeccCC---CCcceecchhhh-hhhhhhhhHhh
Confidence 9999999998754332211 1111 111112333355788999999874 267888888788 78999999854
No 5
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=98.97 E-value=2.2e-10 Score=120.70 Aligned_cols=139 Identities=19% Similarity=0.406 Sum_probs=93.0
Q ss_pred ccccccc--ccCCCCceeeCcCCCcCcccccCCCC-CCCCCC-------CcccCCccccCCCCCCcccccccccCCCCcc
Q 009258 271 TCRQCEE--KAGEKDGLVCDSCEEMYHLSCIEPAF-KDIPPK-------SWYCARCTAKGFGSPHENCIVCERMNANAPR 340 (539)
Q Consensus 271 ~C~~C~~--~~~~~~ll~Cd~C~~~~H~~Cl~P~l-~~~P~g-------~W~C~~C~~~~~~~~~~~C~vC~~l~~~~~R 340 (539)
+|.+|.. ..+.+++|.||.|.-..|-.|+...- ..||.+ .|||..|..+. ..+.|-+|+.-.+..++
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv---s~P~CElCPn~~GifKe 197 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV---SLPHCELCPNRFGIFKE 197 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCC---CCCccccCCCcCCcccc
Confidence 7999965 55778999999999999999995331 245554 49999998655 23689999999999999
Q ss_pred ccccccCCCCCCCCCCC--Cccccccccc-cccCCCCCCCCCCCccccCccccccCcccccCCCcccccCCcccCCcccc
Q 009258 341 IQINQAGDEICPANGET--STEFEENSNC-TTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYH 417 (539)
Q Consensus 341 ~~~~~~~~~~~~~~~e~--~~e~e~~s~~-~~e~~~~~~~~gv~~~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH 417 (539)
+.+++|.|.+|.--... +-+....... .++. + -+.-....|..|..+.....+-.+.|+.+.| ..|||
T Consensus 198 tDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em--~------ysk~Gak~Cs~Ced~~fARtGvci~CdaGMC-k~YfH 268 (707)
T KOG0957|consen 198 TDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEM--D------YSKFGAKTCSACEDKIFARTGVCIRCDAGMC-KEYFH 268 (707)
T ss_pred cchhhHHHHHHHhhcCccccccccccccccHHHh--h------hhhhccchhccccchhhhhcceeeeccchhh-hhhhh
Confidence 99999999886432111 1111110000 0000 0 0011235677887665555677788888888 77888
Q ss_pred cccc
Q 009258 418 ERCL 421 (539)
Q Consensus 418 ~~Cl 421 (539)
+.|.
T Consensus 269 VTCA 272 (707)
T KOG0957|consen 269 VTCA 272 (707)
T ss_pred hhHH
Confidence 8776
No 6
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.91 E-value=3e-10 Score=119.46 Aligned_cols=140 Identities=21% Similarity=0.416 Sum_probs=106.2
Q ss_pred cccccccccc--CCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccCCCCCCcccccccccCCCCccccccccC
Q 009258 270 HTCRQCEEKA--GEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKGFGSPHENCIVCERMNANAPRIQINQAG 347 (539)
Q Consensus 270 ~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~~~~~R~~~~~~~ 347 (539)
+.|.+|.+.. +.+.+++||+|+-..|.+|+ ++..+|+|.|+|..|.-..+ .-..|..|+...++.+.+..++|.
T Consensus 194 ~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~~--~i~~C~fCps~dGaFkqT~dgrW~ 269 (669)
T COG5141 194 DICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGEY--QIRCCSFCPSSDGAFKQTSDGRWG 269 (669)
T ss_pred hhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhccccc--ceeEEEeccCCCCceeeccCCchH
Confidence 3799998743 45679999999999999999 88899999999999986654 223488899999999999999999
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCCCCccccCccccccCcccccCCCcccccCCcccCCccccccccCc
Q 009258 348 DEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP 423 (539)
Q Consensus 348 ~~~~~~~~e~~~e~e~~s~~~~e~~~~~~~~gv~~~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~ 423 (539)
|.+|+.......-.-..+....++ -..|+...+.-.|.+|... .+..+.|....| ...||..|...
T Consensus 270 H~iCA~~~pelsF~~l~~~dpI~~-----i~sVs~srwkl~C~iCk~~----~GtcIqCs~~nC-~~aYHVtCArr 335 (669)
T COG5141 270 HVICAMFNPELSFGHLLSKDPIDN-----IASVSSSRWKLGCLICKEF----GGTCIQCSYFNC-TRAYHVTCARR 335 (669)
T ss_pred hHhHHHhcchhccccccccchhhh-----hcccchhhHhheeeEEccc----Ccceeeecccch-hhhhhhhhhhh
Confidence 999988754322111111111111 1134456778899999987 667899998889 68899999865
No 7
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.90 E-value=4.2e-10 Score=123.28 Aligned_cols=140 Identities=16% Similarity=0.423 Sum_probs=108.6
Q ss_pred Ccccccccccc--cCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccCCCCCCcccccccccCCCCcccccc-
Q 009258 268 KVHTCRQCEEK--AGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKGFGSPHENCIVCERMNANAPRIQIN- 344 (539)
Q Consensus 268 ~~~~C~~C~~~--~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~~~~~R~~~~- 344 (539)
++-.|.+|... ++.++|++||.|+.-.|..|+ ++..+|.|.|.|..|... ..+.|++|++.++.++-+..+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Calg----~~ppCvLCPkkGGamK~~~sgT 343 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCALG----IEPPCVLCPKKGGAMKPTKSGT 343 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhcccc----CCCCeeeccccCCcccccCCCC
Confidence 55589999874 356789999999999999999 999999999999999855 456899999999998776544
Q ss_pred ccCCCCCCCCCCCCccccccccccccCCCCCCCCCCCccccCccccccCcccccCCCcccccCCcccCCccccccccCc
Q 009258 345 QAGDEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP 423 (539)
Q Consensus 345 ~~~~~~~~~~~e~~~e~e~~s~~~~e~~~~~~~~gv~~~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~ 423 (539)
+|.|..|.-++.... ++....+ ++...-++++..++..+|..|... .+..+.|....| -..||+.|...
T Consensus 344 ~wAHvsCALwIPEVs-ie~~ekm----ePItkfs~IpesRwslvC~LCk~k----~GACIqCs~k~C-~t~fHv~CA~~ 412 (893)
T KOG0954|consen 344 KWAHVSCALWIPEVS-IECPEKM----EPITKFSHIPESRWSLVCNLCKVK----SGACIQCSNKTC-RTAFHVTCAFE 412 (893)
T ss_pred eeeEeeeeeccceee-ccCHhhc----CcccccCCCcHHHHHHHHHHhccc----CcceEEecccch-hhhccchhhhh
Confidence 688988888754322 1111111 233333467778999999999987 566888987789 68899999865
No 8
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.88 E-value=2.2e-09 Score=116.82 Aligned_cols=48 Identities=38% Similarity=1.100 Sum_probs=41.7
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCC--CCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPP--RTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Pp--l~~~P~~~W~C~~C~~ 486 (539)
.|..|+..+.-..+++||+|++.||+.||+|| ...+|.|.|+|+.|..
T Consensus 255 fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 255 FCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 47777777655677999999999999999999 5789999999999964
No 9
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.87 E-value=6.4e-10 Score=110.23 Aligned_cols=95 Identities=28% Similarity=0.670 Sum_probs=74.4
Q ss_pred CccccccCccccc----CCCcccccCCcccCCccccccccCcccc--c-CCCCcccCccc-ccccccccCCCCCceeccC
Q 009258 386 ANLCKICGRKVEE----SSDKFRSCEHAFCYSKFYHERCLTPKQL--K-RYGPCWFCPSC-LCRACLTDKDDEKIVMCDG 457 (539)
Q Consensus 386 ~~~C~iCgs~~~~----~~~~ll~C~~~~C~~k~yH~~Cl~~~~~--~-~~~~~W~Cp~C-~C~~C~~~~~~~~ll~Cd~ 457 (539)
.+.|++|-.-..+ ....++.|.. | ...+|+.|+..... . .+...|.|..| .|.+|+.....+.+++||.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~--C-~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~ 334 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKP--C-ATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDV 334 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecc--c-ccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheecccc
Confidence 4578888442211 1456788875 8 78899999987421 1 12358999999 8999999999999999999
Q ss_pred CCCcccccCCCCCCCCCCCCCcccC-CCc
Q 009258 458 CDQGYHLYCMDPPRTSVPKGNWFCR-KCD 485 (539)
Q Consensus 458 C~~~yH~~Cl~Ppl~~~P~~~W~C~-~C~ 485 (539)
||++||.+|++. ..+|.|.|+|. .|.
T Consensus 335 CDRG~HT~CVGL--~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 335 CDRGPHTLCVGL--QDLPRGEWICDMRCR 361 (381)
T ss_pred ccCCCCcccccc--ccccCccchhhhHHH
Confidence 999999999974 89999999997 554
No 10
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.82 E-value=6.2e-09 Score=113.42 Aligned_cols=51 Identities=35% Similarity=0.978 Sum_probs=44.9
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCC--CCCCCCCcccCCcccc
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAF--KDIPPKSWYCARCTAK 319 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l--~~~P~g~W~C~~C~~~ 319 (539)
+++|..|++.+.-..+++||+|+++||+.||+||+ ..+|.|.|+|++|.-+
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 44899999966566779999999999999999995 6899999999999754
No 11
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.57 E-value=1e-07 Score=83.04 Aligned_cols=90 Identities=10% Similarity=0.196 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcchhHHHHHH---HhhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHHh-H-HH
Q 009258 139 DMCQRAFLEIITSEKFTLLCKV---LLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEIG-A-EI 213 (539)
Q Consensus 139 ~~c~~~l~~~~~s~~~~~~~~~---l~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~g-~-ev 213 (539)
..|..+|..+..-+ .|.++-. -..+|..+ |++||||+||..||.+|.| .++..|.+|+++||+|+..+. + .+
T Consensus 5 ~~ce~il~~l~~~~-~s~~f~~~p~~~pdY~~i-Ik~PMDL~tI~~kL~~~~Y-~s~~ef~~D~~Lif~N~~~yN~~~~~ 81 (102)
T cd05501 5 LKCEFLLLKVYCMS-KSGFFISKPYYIRDYCQG-IKEPMWLNKVKERLNERVY-HTVEGFVRDMRLIFHNHKLFYKDDDF 81 (102)
T ss_pred HHHHHHHHHHHhCc-ccccccCCCCCCCchHHH-cCCCCCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 45877777766655 3444422 22346666 9999999999999999999 789999999999999998872 2 67
Q ss_pred HHHHHHhhhhhHhhHHhh
Q 009258 214 ITLAKKLSELSQASYIEH 231 (539)
Q Consensus 214 ~~LA~~Ls~~s~~~~~~~ 231 (539)
..+|..|+..+...+.+.
T Consensus 82 ~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 82 GQVGITLEKKFEKNFKEV 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999998877766554
No 12
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.56 E-value=1.3e-08 Score=77.29 Aligned_cols=48 Identities=38% Similarity=1.020 Sum_probs=42.3
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCC--CCCCCCcccCCccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFK--DIPPKSWYCARCTA 318 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~--~~P~g~W~C~~C~~ 318 (539)
+|.+|+...+.+.+|.||.|..+||..|++|+.. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4889999888899999999999999999999887 55666899999974
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.56 E-value=1.2e-07 Score=83.74 Aligned_cols=96 Identities=22% Similarity=0.371 Sum_probs=77.6
Q ss_pred CcHHHHHHHHHHHHhcchhHHHHHHHh----hhcCCCcccCcccchhhhhhhccc--cccCchhhhhhhHHHHHHHHHHH
Q 009258 136 TNTDMCQRAFLEIITSEKFTLLCKVLL----GNFQGIKVDRVFNLSAINSRMKQG--AYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 136 ~~~~~c~~~l~~~~~s~~~~~~~~~l~----~~~~~~~~~~~~Dl~~Id~rl~~G--~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
.....|..+|..++.. +++.++.... .+|..+ |.+||||+||..||.++ .++.+++.|.+|+++||.|+..+
T Consensus 4 ~~~~~c~~il~~l~~~-~~s~~F~~pv~~~~p~Y~~i-I~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~y 81 (109)
T cd05502 4 IDQRKCERLLLELYCH-ELSLPFHEPVSPSVPNYYKI-IKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKF 81 (109)
T ss_pred HHHHHHHHHHHHHHhC-CCChhhcCCCCCCCCCHHHH-CCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999998876 4666665433 345555 99999999999999996 44579999999999999999887
Q ss_pred ---hHHHHHHHHHhhhhhHhhHHhhcC
Q 009258 210 ---GAEIITLAKKLSELSQASYIEHVG 233 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~~~~~~~~ 233 (539)
+..+..+|..|...+...+.++..
T Consensus 82 N~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 82 NEEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 678999999999998888777653
No 14
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.55 E-value=1.2e-07 Score=82.15 Aligned_cols=86 Identities=14% Similarity=0.394 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---
Q 009258 138 TDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI--- 209 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~--- 209 (539)
.+.|..+|..++..+ ++.++.... .+|..+ |++||||+||..|+.+|.| .++..|.+|+++||.|+..+
T Consensus 2 ~~~c~~il~~l~~~~-~s~~F~~pv~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~~ 78 (97)
T cd05505 2 LQKCEEILSKILKYR-FSWPFREPVTADEAEDYKKV-ITNPMDLQTMQTKCSCGSY-SSVQEFLDDMKLVFSNAEKYYEN 78 (97)
T ss_pred HHHHHHHHHHHHhCC-CcccccCCCChhhcccHHHH-cCCcCCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHCCC
Confidence 357888888887654 555554333 336666 9999999999999999998 77899999999999999887
Q ss_pred hHHHHHHHHHhhhhhHh
Q 009258 210 GAEIITLAKKLSELSQA 226 (539)
Q Consensus 210 g~ev~~LA~~Ls~~s~~ 226 (539)
|..+...|..|...+..
T Consensus 79 ~s~i~~~a~~le~~f~~ 95 (97)
T cd05505 79 GSYVLSCMRKTEQCCVN 95 (97)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 67899999999887653
No 15
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.54 E-value=1e-07 Score=82.46 Aligned_cols=86 Identities=15% Similarity=0.352 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHh----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hH
Q 009258 139 DMCQRAFLEIITSEKFTLLCKVLL----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GA 211 (539)
Q Consensus 139 ~~c~~~l~~~~~s~~~~~~~~~l~----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ 211 (539)
..|+.+|..+...+....+.+.+- .+|... |++||||+||..||.+|.| .++..|.+|+++||.|+..+ +.
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~~~s 80 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKI-IKKPMDFSTIREKLESGQY-KTLEEFAEDVRLVFDNCETFNEDDS 80 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHH-hCCCCCHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 569988888888775544443222 224445 9999999999999999988 88999999999999999887 56
Q ss_pred HHHHHHHHhhhhhHh
Q 009258 212 EIITLAKKLSELSQA 226 (539)
Q Consensus 212 ev~~LA~~Ls~~s~~ 226 (539)
.+..+|..|...+..
T Consensus 81 ~i~~~a~~l~~~f~~ 95 (97)
T cd05503 81 EVGRAGHNMRKFFEK 95 (97)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788889888887654
No 16
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.54 E-value=2.8e-08 Score=98.27 Aligned_cols=48 Identities=31% Similarity=0.878 Sum_probs=45.3
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
.|.+||...+.+.||+||-|++.||++||.||+.+.|+|.|-|.-|..
T Consensus 283 ~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 283 YCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 588899999999999999999999999999999999999999999964
No 17
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.50 E-value=1.9e-08 Score=76.37 Aligned_cols=47 Identities=36% Similarity=1.138 Sum_probs=40.8
Q ss_pred cccccccCCCCCceeccCCCCcccccCCCCCCC--CCCCCCcccCCCcc
Q 009258 440 CRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRT--SVPKGNWFCRKCDA 486 (539)
Q Consensus 440 C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~--~~P~~~W~C~~C~~ 486 (539)
|.+|++..+++.+|.|+.|+.+||+.|++|+.. ..+.+.|+|+.|..
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 778888888999999999999999999999876 44556899999963
No 18
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.49 E-value=2.1e-07 Score=80.91 Aligned_cols=91 Identities=13% Similarity=0.243 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHh----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---h
Q 009258 138 TDMCQRAFLEIITSEKFTLLCKVLL----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---G 210 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~~~~~~~~l~----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g 210 (539)
+..|+.+|-.+...+....+.+.+- .+|..+ |.+||||+||..|+.+|.| .++..|..||++||.|+..+ +
T Consensus 3 ~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y-~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 3 YTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDV-IKKPMDLSTMEEKLENGYY-VTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHH-hcCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5678878877777665554544322 235555 9999999999999999998 78999999999999999887 5
Q ss_pred HHHHHHHHHhhhhhHhhHHh
Q 009258 211 AEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 211 ~ev~~LA~~Ls~~s~~~~~~ 230 (539)
..+...|..|...+...+.+
T Consensus 81 s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 68888999998887665543
No 19
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.45 E-value=3.5e-07 Score=82.03 Aligned_cols=94 Identities=17% Similarity=0.338 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH--
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI-- 209 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~-- 209 (539)
=...|..+|..++..+ .+.++.... .+|..+ |++||||+||..||.+|.| .++..|..|+++||.|+..+
T Consensus 6 w~~~c~~il~~l~~~~-~s~~F~~PVd~~~~pdY~~i-Ik~PmDL~tIk~kL~~~~Y-~~~~ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 6 WKKQCKELVNLMWDCE-DSEPFRQPVDLLKYPDYRDI-IDTPMDLGTVKETLFGGNY-DDPMEFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHHHhCC-ccccccCCCChhhcCcHHHH-hCCcccHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHCC
Confidence 3567887777776654 444444333 235556 9999999999999999999 67889999999999999887
Q ss_pred --hHHHHHHHHHhhhhhHhhHHhhcC
Q 009258 210 --GAEIITLAKKLSELSQASYIEHVG 233 (539)
Q Consensus 210 --g~ev~~LA~~Ls~~s~~~~~~~~~ 233 (539)
+..+..+|..|...+...+.+...
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l~~ 108 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKIIS 108 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 246888999999998877776654
No 20
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.44 E-value=2.5e-07 Score=82.54 Aligned_cols=93 Identities=14% Similarity=0.267 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
..+...|..+|..|+.-+ .+.++.... .+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+..+
T Consensus 11 ~~~~~~c~~il~~l~~~~-~s~~F~~pvd~~~~pdY~~v-I~~PmDL~tI~~kL~~~~Y-~s~~~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 11 PLNLSALEQLLVEIVKHK-DSWPFLRPVSKIEVPDYYDI-IKKPMDLGTIKEKLNMGEY-KLAEEFLSDIQLVFSNCFLY 87 (115)
T ss_pred HHHHHHHHHHHHHHHhCC-CchhhcCCCCccccccHHHH-hcCcccHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 456778998888888654 556554333 235556 9999999999999999988 77889999999999999887
Q ss_pred ---hHHHHHHHHHhhhhhHhhHHh
Q 009258 210 ---GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
+..+..+|..|...+...+++
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~ 111 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRK 111 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999987766554
No 21
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.43 E-value=3.2e-07 Score=80.97 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHh-------hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH-
Q 009258 138 TDMCQRAFLEIITSEKFTLLCKVLL-------GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI- 209 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~~~~~~~~l~-------~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~- 209 (539)
...|..+|..+...++.|.++.... .+|..+ |.+||||+||..||.+|.| .++..|.+|+++||.|+..+
T Consensus 5 ~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y-~s~~ef~~D~~li~~Na~~yN 82 (108)
T cd05495 5 RQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDI-VKNPMDLSTIRRKLDTGQY-QDPWQYVDDVWLMFDNAWLYN 82 (108)
T ss_pred HHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHH-hCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHC
Confidence 4567778888888866777776322 345555 9999999999999999988 67889999999999999887
Q ss_pred --hHHHHHHHHHhhhhhHhhHH
Q 009258 210 --GAEIITLAKKLSELSQASYI 229 (539)
Q Consensus 210 --g~ev~~LA~~Ls~~s~~~~~ 229 (539)
+..+..+|..|...+...+.
T Consensus 83 ~~~s~i~~~a~~l~~~F~~~~~ 104 (108)
T cd05495 83 RKTSRVYKYCTKLAEVFEQEID 104 (108)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 57888999999988776544
No 22
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.40 E-value=9.5e-08 Score=105.54 Aligned_cols=49 Identities=31% Similarity=1.057 Sum_probs=46.3
Q ss_pred cccccccccCCCCCceeccCCCCc-ccccCCCCCCCCCCCCCcccCCCcc
Q 009258 438 CLCRACLTDKDDEKIVMCDGCDQG-YHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 438 C~C~~C~~~~~~~~ll~Cd~C~~~-yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
|.|.+|...+..+.||+||.|+.+ ||+|||+|+|.++|.+.|||++|..
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 579999999889999999999999 9999999999999999999999963
No 23
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.38 E-value=4.6e-07 Score=79.80 Aligned_cols=84 Identities=15% Similarity=0.312 Sum_probs=64.2
Q ss_pred HHHHHHHHhcchhHHHHHHHh-------hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hH
Q 009258 142 QRAFLEIITSEKFTLLCKVLL-------GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GA 211 (539)
Q Consensus 142 ~~~l~~~~~s~~~~~~~~~l~-------~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ 211 (539)
+.+|.. |...++|.++.... .+|..+ |++||||+||..||.+|.| .+...|.+||++||.|+..+ +.
T Consensus 11 ~~il~~-l~~~~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y-~s~~ef~~D~~li~~Na~~yN~~~s 87 (107)
T cd05497 11 KVVLKA-LWKHKFAWPFQQPVDAVKLNLPDYHKI-IKTPMDLGTIKKRLENNYY-WSASECIQDFNTMFTNCYIYNKPGD 87 (107)
T ss_pred HHHHHH-HHhCCcCccccCCCCcccccCCcHHHH-HcCcccHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 333444 44455666666432 345556 9999999999999999977 78889999999999999887 67
Q ss_pred HHHHHHHHhhhhhHhhH
Q 009258 212 EIITLAKKLSELSQASY 228 (539)
Q Consensus 212 ev~~LA~~Ls~~s~~~~ 228 (539)
.+..+|..|...+...+
T Consensus 88 ~i~~~A~~l~~~f~~~l 104 (107)
T cd05497 88 DVVLMAQTLEKLFLQKL 104 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999988766543
No 24
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.37 E-value=1.2e-07 Score=104.70 Aligned_cols=53 Identities=32% Similarity=0.894 Sum_probs=48.0
Q ss_pred CcccccccccccCCCCceeeCcCCCc-CcccccCCCCCCCCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEM-YHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~-~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
+.+.|.+|+..+..+.||+||+|+.. ||++||+|++..+|.+.|||+.|..-.
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 34579999998888899999999988 999999999999999999999997543
No 25
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.36 E-value=4.8e-07 Score=78.32 Aligned_cols=86 Identities=19% Similarity=0.468 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHh-------hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH-
Q 009258 138 TDMCQRAFLEIITSEKFTLLCKVLL-------GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI- 209 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~~~~~~~~l~-------~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~- 209 (539)
+..|+.+|..++..+ .+.++.... .+|..+ |.+||||+||..||.+|.| .++..|.+|+++||.|+..+
T Consensus 2 ~~~c~~il~~l~~~~-~~~~F~~pv~~~~~~~p~Y~~~-I~~P~dl~tI~~kL~~~~Y-~s~~ef~~D~~li~~Na~~yn 78 (99)
T cd05506 2 MKQCGTLLRKLMKHK-WGWVFNAPVDVVALGLPDYFDI-IKKPMDLGTVKKKLEKGEY-SSPEEFAADVRLTFANAMRYN 78 (99)
T ss_pred HHHHHHHHHHHHhCC-CCccccCCCCccccCCCCHHHH-HcCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHC
Confidence 467998888887665 555555332 224445 9999999999999999998 67999999999999999887
Q ss_pred --hHHHHHHHHHhhhhhHh
Q 009258 210 --GAEIITLAKKLSELSQA 226 (539)
Q Consensus 210 --g~ev~~LA~~Ls~~s~~ 226 (539)
+..+..+|..|...+..
T Consensus 79 ~~~s~i~~~a~~l~~~fe~ 97 (99)
T cd05506 79 PPGNDVHTMAKELLKIFET 97 (99)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 56788899888877553
No 26
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.34 E-value=6.2e-07 Score=78.10 Aligned_cols=87 Identities=17% Similarity=0.398 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcc--hhHHHHHHH-------hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHH
Q 009258 138 TDMCQRAFLEIITSE--KFTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQE 208 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~--~~~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~ 208 (539)
.+.|..+|..++..+ .++.++... ..+|-.+ +.+||||++|..||.+|.| .+++.|..|+++||.|+..
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~-I~~Pmdl~~I~~kl~~~~Y-~s~~ef~~D~~li~~Na~~ 79 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDI-IKHPMDLSTIKKKLDNREY-ADAQEFAADVRLMFSNCYK 79 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHH-ccCCCcHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHHH
Confidence 357988888888873 345555432 1234455 9999999999999999998 6899999999999999988
Q ss_pred H---hHHHHHHHHHhhhhhHh
Q 009258 209 I---GAEIITLAKKLSELSQA 226 (539)
Q Consensus 209 ~---g~ev~~LA~~Ls~~s~~ 226 (539)
+ +..+..+|..|.+.+..
T Consensus 80 yn~~~s~i~~~a~~l~~~fe~ 100 (102)
T cd05498 80 YNPPDHPVHAMARKLQDVFED 100 (102)
T ss_pred HCCCCCHHHHHHHHHHHHHHH
Confidence 7 56888899998877654
No 27
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.31 E-value=9.5e-07 Score=76.76 Aligned_cols=60 Identities=18% Similarity=0.338 Sum_probs=51.5
Q ss_pred hcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhH
Q 009258 164 NFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQ 225 (539)
Q Consensus 164 ~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~ 225 (539)
+|... |++||||+||..|+.+|.| .+++.|.+||++||.|+..+ +..+..+|..+...+.
T Consensus 34 dY~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~ 96 (99)
T cd05508 34 DYAQY-VFKPMDLSTLEKNVRKKAY-GSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICE 96 (99)
T ss_pred CHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45556 9999999999999999998 78999999999999999877 5678888888876543
No 28
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.30 E-value=6.4e-07 Score=78.08 Aligned_cols=86 Identities=19% Similarity=0.473 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcc--hhHHHHHHH-------hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 139 DMCQRAFLEIITSE--KFTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 139 ~~c~~~l~~~~~s~--~~~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
..|..+|..++... .++.++.-. ..+|..+ |.+||||++|..||.+|.| .+++.|..|+++||.|+..+
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~-I~~P~dL~~I~~kl~~~~Y-~s~~ef~~D~~li~~N~~~y 80 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSI-IKKPMDLGTISKKLQNGQY-QSAKEFERDVRLIFKNCYTF 80 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHH-hcCCCCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 46888888887742 344455422 2335555 9999999999999999988 78899999999999999887
Q ss_pred ---hHHHHHHHHHhhhhhHh
Q 009258 210 ---GAEIITLAKKLSELSQA 226 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~ 226 (539)
+..+..+|..|...+..
T Consensus 81 n~~~s~~~~~a~~l~~~fe~ 100 (102)
T cd05499 81 NPEGTDVYMMGHQLEEVFND 100 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 67888899999887654
No 30
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.30 E-value=1.1e-06 Score=76.94 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH--
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI-- 209 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~-- 209 (539)
-...|..+|..|. +.+.+.++.... .+|..+ |.+||||+||..|+.+|.| .++..|.+|+.+||.|+..+
T Consensus 4 ~~~~~~~il~~l~-~~~~a~~F~~pV~~~~~p~Y~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 4 WKKAILLVYRTLA-SHRYASVFLKPVTEDIAPGYHSV-VYRPMDLSTIKKNIENGTI-RSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHHH-cCCCCHhhcCCCCccccCCHHHH-hCCCcCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCC
Confidence 3456766665554 445666666433 346666 9999999999999999988 78999999999999999887
Q ss_pred -hHHHHHHHHHhhhhhHh
Q 009258 210 -GAEIITLAKKLSELSQA 226 (539)
Q Consensus 210 -g~ev~~LA~~Ls~~s~~ 226 (539)
+..+..+|..+.+.+..
T Consensus 81 ~~s~v~~~A~~l~~~~~~ 98 (104)
T cd05507 81 SDHDVYLMAVEMQREVMS 98 (104)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 45777788888766544
No 31
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.27 E-value=1.3e-06 Score=76.32 Aligned_cols=87 Identities=14% Similarity=0.217 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHH-------hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
....|..+|..|...+ .+.++... ..+|..+ |.+||||++|..|+.+|.| .+...|..||++||.|+..+
T Consensus 5 ~~~~~~~ii~~l~~~~-~a~~F~~pv~~~~~~~p~Y~~~-I~~P~dL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 5 QHKFLLSSIRSLKRLK-DARPFLVPVDPVKLNIPHYPTI-IKKPMDLGTIERKLKSNVY-TSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred HHHHHHHHHHHHHcCC-CChhhcCCCCcccccCCCHHHH-hcCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 4567888877777665 44444422 2345556 9999999999999999988 78899999999999999887
Q ss_pred ---hHHHHHHHHHhhhhhHh
Q 009258 210 ---GAEIITLAKKLSELSQA 226 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~ 226 (539)
+..+..+|..+...+..
T Consensus 82 N~~~s~~~~~A~~l~~~fe~ 101 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEK 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 56888888888876543
No 33
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.26 E-value=1.9e-06 Score=75.83 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcch-----hHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHH
Q 009258 138 TDMCQRAFLEIITSEK-----FTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQ 207 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~-----~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~ 207 (539)
+..|+.+|-.++.-.. ++.++..+- .+|..+ |.+||||+||..|+.+|.| .++..|..|+++||.|+.
T Consensus 3 ~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~i-I~~Pmdl~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 3 TKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKY-RSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred HHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHH-cCCCCCHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHH
Confidence 4567666555555433 244444322 235555 9999999999999999998 678899999999999998
Q ss_pred HH---hHHHHHHHHHhhhhhHhhHH
Q 009258 208 EI---GAEIITLAKKLSELSQASYI 229 (539)
Q Consensus 208 ~~---g~ev~~LA~~Ls~~s~~~~~ 229 (539)
.+ |..+...|..|...+...++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~ 105 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQ 105 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 87 67899999999988776554
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=98.25 E-value=9.7e-07 Score=73.48 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcchhHHHHHHHh----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHH
Q 009258 141 CQRAFLEIITSEKFTLLCKVLL----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEI 213 (539)
Q Consensus 141 c~~~l~~~~~s~~~~~~~~~l~----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev 213 (539)
|+.+|..+...+....+-+.+- .+|..+ |..||||++|..|+.+|.| .+++.|..||++||.|...+ +..+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~-i~~P~dL~~I~~kl~~~~Y-~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEI-IKNPMDLSTIRKKLENGKY-KSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHH-SSSS--HHHHHHHHHTTSS-SSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHH-HhhccchhhhhHHhhccch-hhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 8888888888885555554432 335555 8999999999999999999 58999999999999998877 4556
Q ss_pred HHHHH
Q 009258 214 ITLAK 218 (539)
Q Consensus 214 ~~LA~ 218 (539)
...|.
T Consensus 79 ~~~A~ 83 (84)
T PF00439_consen 79 YKAAE 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55554
No 35
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.24 E-value=1.2e-06 Score=75.93 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcchhHHHHHH-----HhhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---h
Q 009258 139 DMCQRAFLEIITSEKFTLLCKV-----LLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---G 210 (539)
Q Consensus 139 ~~c~~~l~~~~~s~~~~~~~~~-----l~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g 210 (539)
..|..+|..+...+. +.++.. ...+|... |++||||+||..|+.+|.| .+++.|.+|+++||.|+..+ +
T Consensus 4 ~~l~~il~~l~~~~~-~~~F~~PV~~~~~pdY~~v-Ik~PmDL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 4 KALEQLIRQLQRKDP-HGFFAFPVTDFIAPGYSSI-IKHPMDFSTMKEKIKNNDY-QSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred HHHHHHHHHHHcCCc-cccccCcCCccccccHHHH-HcCccCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHCCCC
Confidence 456666666665543 444442 23456666 9999999999999999988 68999999999999999887 5
Q ss_pred HHHHHHHHHhhhh
Q 009258 211 AEIITLAKKLSEL 223 (539)
Q Consensus 211 ~ev~~LA~~Ls~~ 223 (539)
..+...|..|.+.
T Consensus 81 s~~~~~A~~L~~~ 93 (98)
T cd05513 81 TIYYKAAKKLLHS 93 (98)
T ss_pred CHHHHHHHHHHHh
Confidence 6777788777654
No 36
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.22 E-value=1.4e-06 Score=98.83 Aligned_cols=97 Identities=18% Similarity=0.368 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHh-------hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH-
Q 009258 138 TDMCQRAFLEIITSEKFTLLCKVLL-------GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI- 209 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~~~~~~~~l~-------~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~- 209 (539)
...|..+|.+++... .+-+|+.-. .+||.+ |..||||+||..||.+|.| -++..|.+||+++|.|+..|
T Consensus 224 lk~C~~iLk~l~~~k-~awpF~~PVD~v~LgLpDY~~I-IK~PMDLgTIK~kL~~~~Y-~~~~eF~~DVRL~F~Ncm~YN 300 (640)
T KOG1474|consen 224 LKQCLSILKRLMKHK-HAWPFNEPVDVVKLGLPDYHDI-IKHPMDLGTIKKKLEKGEY-KSAEEFAADVRLTFDNCMTYN 300 (640)
T ss_pred HHHHHHHHHHHHhcc-CCCCcCCCcCHHhcCCcchhhh-cCCCccHHHHHhhhccccc-CCHHHHHHHHHHHHHHHHhcC
Confidence 345876666666554 556665222 459999 9999999999999999998 78999999999999999988
Q ss_pred --hHHHHHHHHHhhhhhHhhHHhhcCCCCC
Q 009258 210 --GAEIITLAKKLSELSQASYIEHVGGSAP 237 (539)
Q Consensus 210 --g~ev~~LA~~Ls~~s~~~~~~~~~~~~~ 237 (539)
|.+|..+|..|.++|...+...-.....
T Consensus 301 p~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~ 330 (640)
T KOG1474|consen 301 PEGSDVYAMAKKLQEVFEERWASMPLEIEE 330 (640)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccccccc
Confidence 7799999999999999877764443333
No 37
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.20 E-value=2.9e-06 Score=74.44 Aligned_cols=87 Identities=11% Similarity=0.220 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcc-----hhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHH
Q 009258 138 TDMCQRAFLEIITSE-----KFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQ 207 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~-----~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~ 207 (539)
++.|+.++..|..-. .++.++..+- .+|..+ |.+||||+||..|+.+|.| .+...|..|+.+||.|+.
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~i-Ik~PmdL~tI~~kl~~~~Y-~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDV-IKKPIDMEKIRSKIEGNQY-QSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHH-cCCCcCHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHH
Confidence 456776655555432 2334444332 224445 9999999999999999998 778999999999999998
Q ss_pred HH---hHHHHHHHHHhhhhhHh
Q 009258 208 EI---GAEIITLAKKLSELSQA 226 (539)
Q Consensus 208 ~~---g~ev~~LA~~Ls~~s~~ 226 (539)
.+ +..+...|..|..++..
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~ 101 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLE 101 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHH
Confidence 87 67888888888877544
No 38
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=98.20 E-value=2e-06 Score=76.45 Aligned_cols=89 Identities=15% Similarity=0.232 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcchhHHHHHHHh----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH-h-----
Q 009258 141 CQRAFLEIITSEKFTLLCKVLL----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI-G----- 210 (539)
Q Consensus 141 c~~~l~~~~~s~~~~~~~~~l~----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~-g----- 210 (539)
++.+|-.|+..+.+..+...+- .+|..+ |.+||||+||..|+.+|.| .++..|.+||++||.|+..+ +
T Consensus 8 L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~v-I~~PmdL~tI~~kl~~~~Y-~s~~ef~~Dv~li~~Na~~yN~~~s~~ 85 (112)
T cd05528 8 LRDVLKRLASDKRFNAFTKPVDEEEVPDYYEI-IKQPMDLQTILQKLDTHQY-LTAKDFLKDIDLIVTNALEYNPDRDPA 85 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCCccccCcHHHH-HcCCCCHHHHHHHHcCCCc-CCHHHHHHHHHHHHHHHHHHCCCCCcc
Confidence 4555555665554444444322 235555 8999999999999999988 78889999999999999877 2
Q ss_pred -HHHHHHHHHhhhhhHhhHHhh
Q 009258 211 -AEIITLAKKLSELSQASYIEH 231 (539)
Q Consensus 211 -~ev~~LA~~Ls~~s~~~~~~~ 231 (539)
..+...|..|.+.+...+...
T Consensus 86 ~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 86 DKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred ccHHHHHHHHHHHHHHHHHHhc
Confidence 368888999988766655543
No 39
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.18 E-value=2.9e-06 Score=75.32 Aligned_cols=90 Identities=13% Similarity=0.244 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH-h
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI-G 210 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~-g 210 (539)
....|+.+|..+..-...|.++-... .+|..+ |.+||||+||..||.+|.| .++..|.+|+++||.|+..+ +
T Consensus 8 ~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~ef~~D~~Li~~N~~~yN~ 85 (112)
T cd05510 8 FYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDI-IKKPMDLGTMLKKLKNLQY-KSKAEFVDDLNLIWKNCLLYNS 85 (112)
T ss_pred HHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHH-hcCccCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHCC
Confidence 45678888888777634555555433 335566 9999999999999999988 77999999999999999888 3
Q ss_pred --H-HHHHHHHHhhhhhHhhH
Q 009258 211 --A-EIITLAKKLSELSQASY 228 (539)
Q Consensus 211 --~-ev~~LA~~Ls~~s~~~~ 228 (539)
. .+...|..|...+...+
T Consensus 86 ~~s~~~~~~A~~l~~~~~~~~ 106 (112)
T cd05510 86 DPSHPLRRHANFMKKKAEHLL 106 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 2 34567888877655443
No 40
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.18 E-value=1.1e-06 Score=98.82 Aligned_cols=47 Identities=32% Similarity=0.863 Sum_probs=43.2
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcc
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCT 317 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 317 (539)
+...|++|+. ++.+|+||+|..+||.+|++||+...|.++|.|+.|.
T Consensus 46 ~~e~c~ic~~---~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 46 EQEACRICAD---GGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCF 92 (696)
T ss_pred hhhhhhhhcC---CCcEEEeccccHHHHHHccCCCCCcCCccceeeeeec
Confidence 3457999987 8999999999999999999999999999999999995
No 41
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.16 E-value=2.5e-06 Score=74.02 Aligned_cols=84 Identities=8% Similarity=0.179 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---h
Q 009258 139 DMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---G 210 (539)
Q Consensus 139 ~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g 210 (539)
+.++.+|..+.. .+.+.++.... .+|..+ |.+||||+||..|+.+|.| .+.+.|..|+++||.|+..+ +
T Consensus 4 ~~l~~il~~l~~-~~~~~~F~~pVd~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 4 VLLRKTLDQLQE-KDTAEIFSEPVDLSEVPDYLDH-IKQPMDFSTMRKKLESQRY-RTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred HHHHHHHHHHHh-CCCchhhcCCCCccccCCHHHH-hcCCcCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHCCCC
Confidence 456555555554 44555554322 345666 9999999999999999988 77899999999999999887 5
Q ss_pred HHHHHHHHHhhhhhH
Q 009258 211 AEIITLAKKLSELSQ 225 (539)
Q Consensus 211 ~ev~~LA~~Ls~~s~ 225 (539)
..+...|..|...++
T Consensus 81 s~~~~~A~~l~~~~~ 95 (98)
T cd05512 81 TIFYRAAVRLRDQGG 95 (98)
T ss_pred CHHHHHHHHHHHhhc
Confidence 677778888876544
No 42
>smart00297 BROMO bromo domain.
Probab=98.15 E-value=3.7e-06 Score=73.25 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=54.5
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHH
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYI 229 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~ 229 (539)
|..+ |.+||||++|..|+.+|.| .++..|..|+++||.|+..+ +..+...|..+...+...+.
T Consensus 40 Y~~~-i~~P~dl~~I~~kl~~~~Y-~s~~ef~~D~~li~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~ 105 (107)
T smart00297 40 YYDI-IKKPMDLSTIKKKLENGKY-SSVEEFVADVQLMFSNAKTYNGPDSEVYKDAKKLEKFFEKKLR 105 (107)
T ss_pred HHHH-hcCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5555 8999999999999999998 77999999999999998877 56888899999888766554
No 43
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.13 E-value=3.8e-06 Score=74.71 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=59.6
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHHhhcCC
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHVGG 234 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~~~~~~ 234 (539)
|-.+ |.+||||+||..|+.+|.| .++..|.+|+++||.|+..+ +..+...|..|.+.+....++...+
T Consensus 41 Yy~i-I~~Pmdl~tI~~kl~~~~Y-~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 41 YYEV-VSNPIDLLKIQQKLKTEEY-DDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred HHHH-hCCccCHHHHHHHhCcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445 9999999999999999998 78889999999999999887 6789999999999988887776654
No 44
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.10 E-value=4.7e-06 Score=70.41 Aligned_cols=85 Identities=21% Similarity=0.329 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhc--chhHHHHHHH----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---
Q 009258 139 DMCQRAFLEIITS--EKFTLLCKVL----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI--- 209 (539)
Q Consensus 139 ~~c~~~l~~~~~s--~~~~~~~~~l----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~--- 209 (539)
..|.+++..+... ..+..+-..+ ..+|..+ +.+||||++|..|+.+|.| .++..|.+|+++||.|+..+
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~-i~~P~~l~~I~~kl~~~~Y-~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEV-IKNPMDLSTIKKKLKNGEY-KSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHH-HhCcccHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCC
Confidence 4576666655554 3333333322 2345566 8999999999999999977 78999999999999998877
Q ss_pred hHHHHHHHHHhhhhhH
Q 009258 210 GAEIITLAKKLSELSQ 225 (539)
Q Consensus 210 g~ev~~LA~~Ls~~s~ 225 (539)
+..+...|..+...+.
T Consensus 81 ~~~~~~~a~~l~~~~~ 96 (99)
T cd04369 81 GSPIYKDAKKLEKLFE 96 (99)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5678888888877654
No 45
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.08 E-value=7.4e-06 Score=71.57 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcc-----hhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHH
Q 009258 139 DMCQRAFLEIITSE-----KFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQE 208 (539)
Q Consensus 139 ~~c~~~l~~~~~s~-----~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~ 208 (539)
+.|+.++..|+.-. ..+.++..+. .+|..+ |.+||||++|..||..|.| .++..|..|+++||.|...
T Consensus 3 ~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~~I~~kl~~~~Y-~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 3 AAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVI-IKRPIALDQIKRRIEGRAY-KSLEEFLEDFHLMFANART 80 (103)
T ss_pred HHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHH-cCCCcCHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHHH
Confidence 45776666666322 1222332222 124444 9999999999999999998 7789999999999999988
Q ss_pred H---hHHHHHHHHHhhhhhHh
Q 009258 209 I---GAEIITLAKKLSELSQA 226 (539)
Q Consensus 209 ~---g~ev~~LA~~Ls~~s~~ 226 (539)
+ +..+...|..|...+..
T Consensus 81 yn~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05519 81 YNQEGSIVYEDAVEMEKAFKK 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHH
Confidence 7 56788888888776553
No 46
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.04 E-value=9.8e-06 Score=71.97 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcchhHHHHHHH----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHH
Q 009258 141 CQRAFLEIITSEKFTLLCKVL----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEI 213 (539)
Q Consensus 141 c~~~l~~~~~s~~~~~~~~~l----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev 213 (539)
-+.++..+........|.+.+ ..+|... |.+||||+||..|+.+|.| .+.+.|..|+++||.|+..+ +..+
T Consensus 5 l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y-~s~~ef~~Dv~li~~Na~~yN~~~s~i 82 (112)
T cd05511 5 LDEIVNELKNLPDSWPFHTPVNKKKVPDYYKI-IKRPMDLQTIRKKISKHKY-QSREEFLEDIELIVDNSVLYNGPDSVY 82 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCChhhcccHHHH-hcCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 344555555544333333322 1234555 9999999999999999988 68999999999999999887 4568
Q ss_pred HHHHHHhhhhhHhhHHhh
Q 009258 214 ITLAKKLSELSQASYIEH 231 (539)
Q Consensus 214 ~~LA~~Ls~~s~~~~~~~ 231 (539)
...|..|...+...+.+.
T Consensus 83 ~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 83 TKKAKEMLELAEELLAER 100 (112)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888888777655543
No 47
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=98.01 E-value=5.4e-06 Score=88.17 Aligned_cols=49 Identities=31% Similarity=0.918 Sum_probs=45.5
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCC----cccCCcccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKS----WYCARCTAK 319 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~----W~C~~C~~~ 319 (539)
.|.+|.+..+...++.||.|...||+.||+|||+.+|+.+ |+|.+|...
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 7999999999999999999999999999999999999975 999999543
No 48
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.99 E-value=3.2e-06 Score=95.26 Aligned_cols=44 Identities=36% Similarity=1.043 Sum_probs=39.3
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCD 485 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~ 485 (539)
.|++| .+.+.+++|+.|+.+||.+|++||+...|.++|.|+.|.
T Consensus 49 ~c~ic---~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 49 ACRIC---ADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCF 92 (696)
T ss_pred hhhhh---cCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeec
Confidence 36677 556789999999999999999999999999999999994
No 49
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=97.98 E-value=9.3e-06 Score=71.08 Aligned_cols=59 Identities=15% Similarity=0.365 Sum_probs=51.0
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhH
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQ 225 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~ 225 (539)
|-.. |.+||||+||..||.+|.| .++..|.+|+++||.|+..+ |..+...|..|...+.
T Consensus 39 Yy~i-Ik~Pmdl~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~ 100 (103)
T cd05518 39 YYKI-ILEPIDLKTIEHNIRNDKY-ATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVLK 100 (103)
T ss_pred HHHH-cCCCcCHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4444 8999999999999999998 78999999999999999887 6788888888876643
No 50
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.97 E-value=9.9e-06 Score=71.27 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=51.8
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhH
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQ 225 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~ 225 (539)
|-.. |.+||||++|..||.+|.| .+++.|.+|+++||.|...+ +..+...|..|.+.+.
T Consensus 41 Yy~~-I~~P~dL~tI~~kl~~~~Y-~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f~ 102 (106)
T cd05525 41 YYER-ITDPVDLSTIEKQILTGYY-KTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAYY 102 (106)
T ss_pred hhhh-CCCCcCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4444 8999999999999999998 77999999999999999887 6789999999988754
No 51
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.96 E-value=3.9e-06 Score=92.20 Aligned_cols=47 Identities=32% Similarity=0.914 Sum_probs=43.1
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCT 317 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 317 (539)
+|..|+...+...+++|++|+.+||.+|..|+.+.+|.|.|+|+.|.
T Consensus 70 vCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 70 VCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred eeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 56667777788899999999999999999999999999999999997
No 52
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=97.96 E-value=1.1e-05 Score=70.70 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=51.4
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhH
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQ 225 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~ 225 (539)
|-.+ |.+||||+||..||.+|.| .+...|..|+++||.|+..+ |..+...|..|..+++
T Consensus 39 Yy~i-I~~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~ 100 (103)
T cd05520 39 YYQE-IKNPISLQQIRTKLKNGEY-ETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQ 100 (103)
T ss_pred HHHH-cCCCcCHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 3344 8999999999999999988 78889999999999999887 6788888988888754
No 53
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.95 E-value=3.6e-06 Score=86.06 Aligned_cols=46 Identities=33% Similarity=0.874 Sum_probs=39.6
Q ss_pred CcccccccccccCCCCceeeCc--CC-CcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
..++|. |.. .+.|+-||. |+ .+||+.|+ +|..-|+|.|||+.|...
T Consensus 220 ~yC~Cn-qvs---yg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 220 TYCICN-QVS---YGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred EEEEec-ccc---cccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhhh
Confidence 355676 544 889999996 99 99999999 999999999999999854
No 54
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.94 E-value=1.4e-05 Score=72.71 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=54.0
Q ss_pred hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhH
Q 009258 163 GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASY 228 (539)
Q Consensus 163 ~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~ 228 (539)
.+|... +..||||+||..||.+|.| .+.+.|..||++||.|+..+ +..+..+|..|...+....
T Consensus 59 p~Y~~i-I~~PmdL~tI~~kl~~~~Y-~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l 125 (128)
T cd05529 59 PDYWNR-VPVPMDLETIRSRLENRYY-RSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRIL 125 (128)
T ss_pred CcHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence 345555 8999999999999999966 77999999999999999887 5788889999988765543
No 55
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.93 E-value=1.6e-05 Score=70.25 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=48.9
Q ss_pred hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhh
Q 009258 163 GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSEL 223 (539)
Q Consensus 163 ~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~ 223 (539)
.+|..+ |.+||||+||..|+.+|.| .+.+.|..||++||.|+..+ +..+..+|..|-+-
T Consensus 37 pdY~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d 98 (109)
T cd05492 37 PKRRRL-IHTHLDVADIQEKINSEKY-TSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRD 98 (109)
T ss_pred CCHHHH-hCCCCcHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 345556 9999999999999999999 67999999999999999887 45677777776554
No 56
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.92 E-value=5.2e-06 Score=76.54 Aligned_cols=28 Identities=32% Similarity=1.017 Sum_probs=26.2
Q ss_pred cCcccccCCCCCCCCCCCcccCCccccC
Q 009258 293 MYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 293 ~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
.||++||+|||+.+|+|+|+||.|..+.
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 4999999999999999999999998765
No 57
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=97.91 E-value=2.2e-05 Score=68.74 Aligned_cols=59 Identities=17% Similarity=0.365 Sum_probs=50.9
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhH
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQ 225 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~ 225 (539)
|-.. |.+||||+||..||.+|.| .++..|..|+++||.|...+ |..+...|..|..++.
T Consensus 39 Yy~v-I~~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f~ 100 (103)
T cd05517 39 YYAV-IKEPIDLKTIAQRIQSGYY-KSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIFT 100 (103)
T ss_pred HHHH-cCCCcCHHHHHHHHCcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 3444 9999999999999999977 78999999999999999887 6788888888877654
No 58
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.91 E-value=4.1e-06 Score=83.61 Aligned_cols=45 Identities=36% Similarity=0.913 Sum_probs=40.1
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccC-Ccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCA-RCT 317 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~-~C~ 317 (539)
.|.+|+...-.+++++||.|++.||++|+ +|..+|.|.|.|. .|.
T Consensus 316 lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICDMRCR 361 (381)
T ss_pred hhhccCCcccchheeccccccCCCCcccc--ccccccCccchhhhHHH
Confidence 57778887778899999999999999999 9999999999997 454
No 59
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.83 E-value=8.8e-06 Score=75.08 Aligned_cols=26 Identities=46% Similarity=1.361 Sum_probs=24.7
Q ss_pred cccccCCCCCCCCCCCCCcccCCCcc
Q 009258 461 GYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 461 ~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
+||++||+|||+.+|.|+|+||.|..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcC
Confidence 59999999999999999999999975
No 60
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.69 E-value=5.5e-05 Score=66.28 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=51.2
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHh
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQA 226 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~ 226 (539)
|-.+ |.+||||++|..||.+|.| .+...|..|+++||.|...+ +..+...|..|...+..
T Consensus 40 Yy~~-I~~Pmdl~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 40 YYQE-ISNPISLDDIKKKVKRRKY-KSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred HHHH-hCCCcCHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3344 9999999999999999988 77889999999999999887 66888888888776543
No 61
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.46 E-value=0.0001 Score=69.04 Aligned_cols=65 Identities=22% Similarity=0.622 Sum_probs=47.3
Q ss_pred cccc---ccccCCCCceeeCcCCCcCcccccCCCC------CCCCCCC--cccCCccccC-----CCCCCcccccccccC
Q 009258 272 CRQC---EEKAGEKDGLVCDSCEEMYHLSCIEPAF------KDIPPKS--WYCARCTAKG-----FGSPHENCIVCERMN 335 (539)
Q Consensus 272 C~~C---~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l------~~~P~g~--W~C~~C~~~~-----~~~~~~~C~vC~~l~ 335 (539)
|.+| +.+.+-|.|+.|-+|-.+||..||.|-- +++-.+. -+|..|...- .+..++.|..|...+
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~G 81 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKPG 81 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCCC
Confidence 6677 5566678999999999999999997653 3454444 6799996432 344667788888766
Q ss_pred C
Q 009258 336 A 336 (539)
Q Consensus 336 ~ 336 (539)
.
T Consensus 82 ~ 82 (175)
T PF15446_consen 82 P 82 (175)
T ss_pred C
Confidence 5
No 62
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.43 E-value=0.00019 Score=63.19 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=48.2
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhH
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQ 225 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~ 225 (539)
|-.+ |++||||+||..|+.+ |.+...|..|+.+||+|++.+ |..+...|..|...+.
T Consensus 40 Yy~i-I~~PmdL~tI~~kl~~---Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~ 99 (106)
T cd05521 40 YYKI-IKNPLSLNTVKKRLPH---YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYIN 99 (106)
T ss_pred HHHH-hcCCCCHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4445 9999999999999998 588999999999999999887 6678888888776644
No 63
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.40 E-value=0.0002 Score=63.71 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=40.1
Q ss_pred ccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHHh-HHHHHHHHHh
Q 009258 170 VDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEIG-AEIITLAKKL 220 (539)
Q Consensus 170 ~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~g-~ev~~LA~~L 220 (539)
.=-||||+||..||.+|-| ..|..|+.||++||+|+..++ ++..--|+.+
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y-~tp~~F~~DiklI~~Nc~~ynd~dr~~KA~EM 111 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYY-ATPKDFLKDIKRIVRDAKTIGDRERLLKANEM 111 (119)
T ss_pred eEeccCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4458999999999999876 789999999999999999884 4444344443
No 64
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.38 E-value=6.2e-05 Score=77.05 Aligned_cols=39 Identities=33% Similarity=0.956 Sum_probs=34.0
Q ss_pred CCCCCceeccC--CC-CcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 447 KDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 447 ~~~~~ll~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
..-+.|+-||. |+ .|||+.|++. ...|+|+|||+.|...
T Consensus 227 vsyg~Mi~CDn~~C~~eWFH~~CVGL--~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 227 VSYGKMIGCDNPGCPIEWFHFTCVGL--KTKPKGKWYCPRCKAE 268 (274)
T ss_pred cccccccccCCCCCCcceEEEecccc--ccCCCCcccchhhhhh
Confidence 34578999998 99 8999999975 7899999999999753
No 65
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.35 E-value=7.1e-05 Score=74.10 Aligned_cols=36 Identities=36% Similarity=1.064 Sum_probs=32.8
Q ss_pred CCCceeeCc--CC-CcCcccccCCCCCCCCCCCcccCCccc
Q 009258 281 EKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 281 ~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
.|.|+-||+ |. .+||+-|+ +|...|+|.|||++|..
T Consensus 231 yGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 231 YGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred cccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 678999994 86 79999999 99999999999999973
No 66
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.32 E-value=0.00028 Score=76.08 Aligned_cols=47 Identities=30% Similarity=0.701 Sum_probs=37.0
Q ss_pred cccCCCCCceeccCCCCcccccCCCCCCCCC----CCCCcccCCCcchhHH
Q 009258 444 LTDKDDEKIVMCDGCDQGYHLYCMDPPRTSV----PKGNWFCRKCDAGIQE 490 (539)
Q Consensus 444 ~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~----P~~~W~C~~C~~~~~~ 490 (539)
+..+...+||+|+.|..+||..|+.|+.+.. |...|+|..|....+.
T Consensus 177 g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~ 227 (464)
T KOG4323|consen 177 GGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKK 227 (464)
T ss_pred CCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhh
Confidence 3445567999999999999999999976543 5567999999764443
No 67
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.24 E-value=9.3e-05 Score=85.38 Aligned_cols=45 Identities=31% Similarity=0.809 Sum_probs=42.4
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
.|++|.+ .+.+++|..|++.||+.|..||.-.+|+..|.|.-|..
T Consensus 346 hcrf~~d---~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 346 HCRFCHD---LGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccCc---ccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 7999987 88999999999999999999999999999999999974
No 68
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.22 E-value=8e-05 Score=90.35 Aligned_cols=51 Identities=43% Similarity=1.168 Sum_probs=47.2
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcchhH
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAGIQ 489 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~~~ 489 (539)
.|.+|.+.++...|+.|+.|..+||++|+.|.+..+|.++|+|+.|+....
T Consensus 1110 ~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1110 LCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 489999998899999999999999999999999999999999999986543
No 69
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.19 E-value=7e-05 Score=90.84 Aligned_cols=52 Identities=33% Similarity=0.926 Sum_probs=48.3
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
...|.+|.+..+...++.|+.|...||++|+.|.+..+|.|+|+||.|+...
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3489999998888899999999999999999999999999999999998654
No 70
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.91 E-value=0.00014 Score=51.49 Aligned_cols=34 Identities=35% Similarity=0.953 Sum_probs=20.4
Q ss_pred CCceeeCcCCCcCcccccCCCCCCCCCC-CcccCCcc
Q 009258 282 KDGLVCDSCEEMYHLSCIEPAFKDIPPK-SWYCARCT 317 (539)
Q Consensus 282 ~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g-~W~C~~C~ 317 (539)
+.||.|++|.-.+|..|+ ++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 468999999999999999 88888887 79998874
No 71
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=96.84 E-value=0.0023 Score=56.66 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=54.0
Q ss_pred CCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHHh
Q 009258 167 GIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 167 ~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
...+.+||||.+|..|+.+|.| ++.+.|.+|+.++|.|.+.+ |.++..-|..|...+.....+
T Consensus 41 ~~~ik~Pi~l~~Ik~ki~~~~Y-~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 41 VGPKKIPLTLDIIKRNVDKGRY-RRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred hhhhcCCccHHHHHHHHHcCCc-CcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999998 77888999999999998877 778888888888877665443
No 72
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.79 E-value=0.00053 Score=68.07 Aligned_cols=36 Identities=36% Similarity=1.035 Sum_probs=31.2
Q ss_pred CCCceeccC--CCC-cccccCCCCCCCCCCCCCcccCCCcc
Q 009258 449 DEKIVMCDG--CDQ-GYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 449 ~~~ll~Cd~--C~~-~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
=++|+-||. |.+ |||+.|++. ..+|+|.|||+.|..
T Consensus 231 yGqMVaCDn~nCkrEWFH~~CVGL--k~pPKG~WYC~eCk~ 269 (271)
T COG5034 231 YGQMVACDNANCKREWFHLECVGL--KEPPKGKWYCPECKK 269 (271)
T ss_pred cccceecCCCCCchhheecccccc--CCCCCCcEeCHHhHh
Confidence 368999984 887 999999975 899999999999963
No 73
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.37 E-value=0.0014 Score=77.25 Aligned_cols=49 Identities=37% Similarity=0.934 Sum_probs=40.9
Q ss_pred ccccccccCCC--CCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcchhH
Q 009258 439 LCRACLTDKDD--EKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAGIQ 489 (539)
Q Consensus 439 ~C~~C~~~~~~--~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~~~ 489 (539)
.|.+|....-. ..+|+||.|+.++|++|.+ ..-+|.|.|+|..|....+
T Consensus 221 ~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 221 VCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred cceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcC
Confidence 57788766544 7899999999999999999 3568999999999986544
No 74
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=95.96 E-value=0.0051 Score=54.02 Aligned_cols=87 Identities=18% Similarity=0.390 Sum_probs=60.7
Q ss_pred ccccccccCCCCccccccccCCCCCCCCCCCCccccccccccccCCCCCCCCCCCccccCccccccCcccccCCCccccc
Q 009258 327 NCIVCERMNANAPRIQINQAGDEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSC 406 (539)
Q Consensus 327 ~C~vC~~l~~~~~R~~~~~~~~~~~~~~~e~~~e~e~~s~~~~e~~~~~~~~gv~~~~~~~~C~iCgs~~~~~~~~ll~C 406 (539)
.|++|++.++..+|+..++|.|..|+.+.... .+.....+.+ ...+.+........|.+|++. .+..+.|
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~-~~~~~~~~~~-----v~~~~i~~~~~~~~C~iC~~~----~G~~i~C 71 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEV-IFNNGESMEP-----VDISNIPPSRFKLKCSICGKS----GGACIKC 71 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCcc-EEeechhcCc-----ccceeecchhcCCcCcCCCCC----CceeEEc
Confidence 58999999999999999999999998884322 1211111110 001122234457899999997 5668999
Q ss_pred CCcccCCccccccccCcc
Q 009258 407 EHAFCYSKFYHERCLTPK 424 (539)
Q Consensus 407 ~~~~C~~k~yH~~Cl~~~ 424 (539)
....| ..+||+.|....
T Consensus 72 ~~~~C-~~~fH~~CA~~~ 88 (110)
T PF13832_consen 72 SHPGC-STAFHPTCARKA 88 (110)
T ss_pred CCCCC-CcCCCHHHHHHC
Confidence 99889 799999998653
No 75
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=95.60 E-value=0.008 Score=64.19 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=61.2
Q ss_pred hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHHhhcCCCCC
Q 009258 163 GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHVGGSAP 237 (539)
Q Consensus 163 ~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~~~~~~~~~ 237 (539)
.+|.-+ +..||||++|..++..|.| .+.+.|.+|..+||.|+..+ +..+...|..+...+...++++......
T Consensus 179 PdYy~i-Ik~Pm~L~~i~kkl~~~~Y-~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~ 254 (371)
T COG5076 179 PDYYEI-IKSPMDLLTIQKKLKNGRY-KSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEMLE 254 (371)
T ss_pred CChhee-ecchhhHHHHHHHHHhhhh-hhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccchh
Confidence 457777 8999999999999999999 88999999999999998776 4567788899988877777766655433
No 76
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.20 E-value=0.0064 Score=65.79 Aligned_cols=50 Identities=32% Similarity=0.790 Sum_probs=40.2
Q ss_pred ccccccc--ccCCCCceeeCcCCCcCcccccCCCCCC----CCCCCcccCCccccC
Q 009258 271 TCRQCEE--KAGEKDGLVCDSCEEMYHLSCIEPAFKD----IPPKSWYCARCTAKG 320 (539)
Q Consensus 271 ~C~~C~~--~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~----~P~g~W~C~~C~~~~ 320 (539)
.|.+|.. ....+.||.|++|..+||..|..|..+. -|...|||..|....
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 4888754 4556699999999999999999988754 455679999998654
No 77
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=93.55 E-value=0.03 Score=62.53 Aligned_cols=44 Identities=41% Similarity=1.123 Sum_probs=36.1
Q ss_pred cccccccC--CCCCceeccC--CCCcccccCCCCCCCCCCCCCcccCCCc
Q 009258 440 CRACLTDK--DDEKIVMCDG--CDQGYHLYCMDPPRTSVPKGNWFCRKCD 485 (539)
Q Consensus 440 C~~C~~~~--~~~~ll~Cd~--C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~ 485 (539)
|-||.... .+..++.||. |.-+.|.-|... ..+|.|.|||.+|.
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGI--vqVPtGpWfCrKCe 55 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGI--VQVPTGPWFCRKCE 55 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhccee--EecCCCchhhhhhh
Confidence 44554333 3678999985 999999999986 79999999999995
No 78
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.19 E-value=0.011 Score=41.77 Aligned_cols=34 Identities=32% Similarity=1.108 Sum_probs=19.1
Q ss_pred CCceeccCCCCcccccCCCCCCCCCCCC-CcccCCCc
Q 009258 450 EKIVMCDGCDQGYHLYCMDPPRTSVPKG-NWFCRKCD 485 (539)
Q Consensus 450 ~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~-~W~C~~C~ 485 (539)
++|+.|+.|.-..|..|.+- ..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv--~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV--SEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCc--ccCCCCCcEECCcCC
Confidence 57999999999999999986 455555 69998773
No 79
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=92.56 E-value=0.044 Score=61.71 Aligned_cols=45 Identities=33% Similarity=0.977 Sum_probs=38.8
Q ss_pred ccccccccC--CCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCc
Q 009258 439 LCRACLTDK--DDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCD 485 (539)
Q Consensus 439 ~C~~C~~~~--~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~ 485 (539)
.|.+|...+ ....|++||.|....|.-|.+. .++|.+.|.|..|.
T Consensus 273 iCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGI--le~p~gpWlCr~Ca 319 (893)
T KOG0954|consen 273 ICDVCRSPDSEEANEMVFCDKCNICVHQACYGI--LEVPEGPWLCRTCA 319 (893)
T ss_pred eeceecCCCccccceeEEeccchhHHHHhhhce--eecCCCCeeehhcc
Confidence 578887653 3678999999999999999976 78999999999995
No 80
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=92.28 E-value=0.055 Score=58.41 Aligned_cols=45 Identities=38% Similarity=1.007 Sum_probs=37.1
Q ss_pred ccccccccC--CCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCc
Q 009258 439 LCRACLTDK--DDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCD 485 (539)
Q Consensus 439 ~C~~C~~~~--~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~ 485 (539)
.|.+|.... +...+++||.|+-+.|..|.+. .-+|.|.|+|..|.
T Consensus 195 ~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI--~f~peG~WlCrkCi 241 (669)
T COG5141 195 ICTKCTSTHNENSNAIVFCDGCEICVHQSCYGI--QFLPEGFWLCRKCI 241 (669)
T ss_pred hhHhccccccCCcceEEEecCcchhhhhhcccc--eecCcchhhhhhhc
Confidence 456665433 3567999999999999999987 57999999999996
No 81
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=91.02 E-value=0.048 Score=51.39 Aligned_cols=31 Identities=35% Similarity=1.029 Sum_probs=25.5
Q ss_pred ccccc---ccCCCCCceeccCCCCcccccCCCCC
Q 009258 440 CRACL---TDKDDEKIVMCDGCDQGYHLYCMDPP 470 (539)
Q Consensus 440 C~~C~---~~~~~~~ll~Cd~C~~~yH~~Cl~Pp 470 (539)
|.+|+ .+...+.|+.|-+|..+||-.||+|.
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCc
Confidence 66674 44457899999999999999999983
No 82
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=90.19 E-value=0.15 Score=59.99 Aligned_cols=44 Identities=36% Similarity=0.893 Sum_probs=40.0
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCD 485 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~ 485 (539)
.|++| .+.+.+++|..|++.||+.|..||+...|+..|-|--|.
T Consensus 346 hcrf~---~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 346 HCRFC---HDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCN 389 (1414)
T ss_pred ccccc---CcccceeecccCCceEEeeecCCccccCCCccchhhhhh
Confidence 47788 566789999999999999999999999999999999996
No 83
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=87.84 E-value=0.39 Score=57.29 Aligned_cols=50 Identities=32% Similarity=0.947 Sum_probs=43.9
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
...|..|.+.... .++.|++|...||.+|..|+++.+|+|.|.|+.|...
T Consensus 155 ~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 155 YPQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred chhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3478999886666 4559999999999999999999999999999999866
No 84
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=84.61 E-value=0.72 Score=55.06 Aligned_cols=47 Identities=47% Similarity=1.249 Sum_probs=41.1
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|..|.+.... .++.|+.|...||..|..||+..+|.+.|.|+.|..
T Consensus 157 ~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (904)
T KOG1246|consen 157 QCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIP 203 (904)
T ss_pred hhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccc
Confidence 47778877766 444999999999999999999999999999999964
No 85
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=84.47 E-value=0.6 Score=36.08 Aligned_cols=33 Identities=33% Similarity=0.674 Sum_probs=28.0
Q ss_pred ccccccccccc-CCCCceeeCcCCCcCcccccCC
Q 009258 269 VHTCRQCEEKA-GEKDGLVCDSCEEMYHLSCIEP 301 (539)
Q Consensus 269 ~~~C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~P 301 (539)
...|.+|+..- ++++++.|..|...||..|+..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34799999854 4888999999999999999954
No 86
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=83.76 E-value=0.53 Score=36.37 Aligned_cols=32 Identities=34% Similarity=0.861 Sum_probs=26.6
Q ss_pred cccccccccC-CCCCceeccCCCCcccccCCCC
Q 009258 438 CLCRACLTDK-DDEKIVMCDGCDQGYHLYCMDP 469 (539)
Q Consensus 438 C~C~~C~~~~-~~~~ll~Cd~C~~~yH~~Cl~P 469 (539)
..|.+|++.- +++.++.|..|...||..|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 3678888764 3788999999999999999865
No 87
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=82.13 E-value=0.49 Score=40.00 Aligned_cols=44 Identities=20% Similarity=0.432 Sum_probs=30.1
Q ss_pred cccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 442 ACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
.|...+++-.++.+. |...||+.|+..-+... ..+=.||-|+..
T Consensus 37 ~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 37 DCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 345555555666555 99999999988765543 223499999853
No 88
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=80.41 E-value=1.6 Score=38.20 Aligned_cols=72 Identities=15% Similarity=0.418 Sum_probs=42.8
Q ss_pred cccccCcccccCCCcccccCCcccCCccccccccCcccc------cCC---CCcccCc---ccccccccccCCCCCceec
Q 009258 388 LCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPKQL------KRY---GPCWFCP---SCLCRACLTDKDDEKIVMC 455 (539)
Q Consensus 388 ~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~~~~------~~~---~~~W~Cp---~C~C~~C~~~~~~~~ll~C 455 (539)
.|.+|... ++.+..-.. +.+.|..|..-... ... ....+=+ .=.|.+|++. .+..+.|
T Consensus 2 ~C~lC~~~----~Galk~t~~----~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~~--~G~~i~C 71 (110)
T PF13832_consen 2 SCVLCPKR----GGALKRTSD----GQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGKS--GGACIKC 71 (110)
T ss_pred ccEeCCCC----CCcccCccC----CcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCCC--CceeEEc
Confidence 47788775 333433332 67888888843110 000 0000001 1258888765 5779999
Q ss_pred cC--CCCcccccCCCC
Q 009258 456 DG--CDQGYHLYCMDP 469 (539)
Q Consensus 456 d~--C~~~yH~~Cl~P 469 (539)
.. |..+||+.|..-
T Consensus 72 ~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 72 SHPGCSTAFHPTCARK 87 (110)
T ss_pred CCCCCCcCCCHHHHHH
Confidence 88 999999999754
No 89
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=71.45 E-value=1.2 Score=39.66 Aligned_cols=65 Identities=5% Similarity=-0.040 Sum_probs=40.4
Q ss_pred HHHHHHHHHH---hcchhHHHHHHHh---hhcCCCcccCcccchhhhhhhccccc------cCchhhhhhhHHHHHHH
Q 009258 140 MCQRAFLEII---TSEKFTLLCKVLL---GNFQGIKVDRVFNLSAINSRMKQGAY------ENSPMQFMADVQQVWKK 205 (539)
Q Consensus 140 ~c~~~l~~~~---~s~~~~~~~~~l~---~~~~~~~~~~~~Dl~~Id~rl~~G~Y------~~sp~~f~~DV~~vwkn 205 (539)
.|-..|..+. .+..|..+-+-.. .+|... +.+||||+||..++.++.+ +..-+...+++...|.+
T Consensus 7 ~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~i-IK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T cd05494 7 RVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDV-IKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGR 83 (114)
T ss_pred HHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhh-cCCCCChHHHHHHHHccccccccccccccccccccccccccc
Confidence 3545566666 4555555544422 346667 9999999999999998743 22223455555555554
No 90
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=68.63 E-value=0.67 Score=37.67 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=19.3
Q ss_pred cccccccccC-CC--CceeeC--cCCCcCcccccCCCCCCCCC-------CCcccCCccc
Q 009258 271 TCRQCEEKAG-EK--DGLVCD--SCEEMYHLSCIEPAFKDIPP-------KSWYCARCTA 318 (539)
Q Consensus 271 ~C~~C~~~~~-~~--~ll~Cd--~C~~~~H~~Cl~P~l~~~P~-------g~W~C~~C~~ 318 (539)
.|.+|-.... .+ ..+.|+ .|...||..||.--+...++ -.+-||.|..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 5888876422 22 358898 89999999999533322211 2367998874
No 91
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=63.17 E-value=2.4 Score=28.41 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=12.2
Q ss_pred ccccccccCCCCCceeccCCCCcccccC
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYC 466 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~C 466 (539)
.|.+|++..+++....|..|+-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 3788888776668899999999999887
No 92
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=7.2 Score=41.36 Aligned_cols=48 Identities=27% Similarity=0.625 Sum_probs=36.7
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
+.|.+|-+....|+.|.==-|...||..|++|.|.+- .=+||-|+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 4899999876666655445788999999999998655 35799997543
No 93
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=62.90 E-value=2.3 Score=34.52 Aligned_cols=49 Identities=24% Similarity=0.513 Sum_probs=18.6
Q ss_pred cccccccC---CCCCceecc--CCCCcccccCCCCCC-------CCCCCCCcccCCCcchh
Q 009258 440 CRACLTDK---DDEKIVMCD--GCDQGYHLYCMDPPR-------TSVPKGNWFCRKCDAGI 488 (539)
Q Consensus 440 C~~C~~~~---~~~~ll~Cd--~C~~~yH~~Cl~Ppl-------~~~P~~~W~C~~C~~~~ 488 (539)
|.+|.... +....+.|+ .|...||+.||---+ .....-.+.||.|...+
T Consensus 5 C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 5 CGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 56666432 234568898 899999999997521 11222246799997643
No 94
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=61.84 E-value=5.3 Score=39.17 Aligned_cols=39 Identities=28% Similarity=0.736 Sum_probs=30.2
Q ss_pred ccccccccC-----CCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDK-----DDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~-----~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|..++ +.+....|..|...||..|... =.||.|..
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 488887654 2457899999999999999973 13999963
No 95
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=60.56 E-value=3.6 Score=34.85 Aligned_cols=46 Identities=17% Similarity=0.440 Sum_probs=29.9
Q ss_pred ccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 272 CRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 272 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
|..|...+++-.++++. |...||+.|+.--+.+- ...-.||-|+..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 44454444343455444 99999999997666553 334589999743
No 96
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=59.60 E-value=0.79 Score=33.32 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=27.6
Q ss_pred cccccccccC-CCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcc
Q 009258 271 TCRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCT 317 (539)
Q Consensus 271 ~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 317 (539)
.|.+|...-. ++.++... |...||..|+..-+..- -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 6889987543 34444444 99999999997655432 3777763
No 97
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=57.62 E-value=3 Score=30.37 Aligned_cols=42 Identities=31% Similarity=0.742 Sum_probs=21.4
Q ss_pred ccccCcccccCCCcccccCCcccCCccccccccCcccccCCCCcccCccc
Q 009258 389 CKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPKQLKRYGPCWFCPSC 438 (539)
Q Consensus 389 C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~~~~~~~~~~W~Cp~C 438 (539)
|++|..-.. +...+.|+|.|| ..|+..-.....+..+.||.|
T Consensus 1 CpiC~~~~~--~Pv~l~CGH~FC------~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK--DPVSLPCGHSFC------RSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S--SEEE-SSSSEEE------HHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC--CccccCCcCHHH------HHHHHHHHHccCCcCCCCcCC
Confidence 566766544 566788998888 456654322222233677765
No 98
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=53.45 E-value=5.3 Score=33.36 Aligned_cols=37 Identities=30% Similarity=0.653 Sum_probs=30.6
Q ss_pred cccCccccccCcccccCCCcccccCCcccCCccccccccCcc
Q 009258 383 RESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPK 424 (539)
Q Consensus 383 ~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~~ 424 (539)
......|.+|+++ .+..+.|....| ..+||..|....
T Consensus 33 ~~~~~~C~~C~~~----~Ga~i~C~~~~C-~~~fH~~CA~~~ 69 (90)
T PF13771_consen 33 RRRKLKCSICKKK----GGACIGCSHPGC-SRSFHVPCARKA 69 (90)
T ss_pred HHhCCCCcCCCCC----CCeEEEEeCCCC-CcEEChHHHccC
Confidence 4556799999986 467899999999 799999999763
No 99
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=53.00 E-value=4.9 Score=26.89 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=12.7
Q ss_pred cccccccccCCCCceeeCcCCCcCccccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCI 299 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl 299 (539)
.|..|+....++..-.|..|+-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58899987666678899999999998873
No 100
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=50.41 E-value=8.5 Score=44.47 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=37.2
Q ss_pred cccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHHhH
Q 009258 169 KVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEIGA 211 (539)
Q Consensus 169 ~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~g~ 211 (539)
.+..||||+||.-++.++.| ...++|+.|+..++.|+.-+++
T Consensus 642 ~I~~pmDl~tM~~~l~~~~y-~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 642 VIKHPMDLRTMQNRLKDNQY-TEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred HhcccccHHHHhhhccccch-hhHHHHHHHHHHHHhhhhccCC
Confidence 38899999999999999999 5588899999999999877643
No 101
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=49.12 E-value=29 Score=41.92 Aligned_cols=83 Identities=17% Similarity=0.455 Sum_probs=59.6
Q ss_pred CCCcccccccccccC--CCCceeeCcCCCcCcccccCCCCCCCCC-CCcccCCccccCCCCCCcccccccccCCCCcccc
Q 009258 266 VYKVHTCRQCEEKAG--EKDGLVCDSCEEMYHLSCIEPAFKDIPP-KSWYCARCTAKGFGSPHENCIVCERMNANAPRIQ 342 (539)
Q Consensus 266 ~~~~~~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-g~W~C~~C~~~~~~~~~~~C~vC~~l~~~~~R~~ 342 (539)
.+....|.+|..... ....+.|+.|..+-|..|+ +....+. -.|.|..|.... -...|..|..-+++++.++
T Consensus 570 ~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~--g~~~~~~~~~~~~~~~~~~~---~~r~~~l~~~~g~al~p~d 644 (1005)
T KOG1080|consen 570 KWTTERCAVCRDDEDWEKNVSIICDRCTRSVHSECY--GNLKSYDGTSWVCDSCETLD---IKRSCCLCPVKGGALKPTD 644 (1005)
T ss_pred CCCcccccccccccccccceeeeeccccccCCCccc--ccCCCCCCCcchhhcccccc---CCchhhhccccCcccCCCC
Confidence 455678999988543 4457889999999999999 4334333 469999998632 1336778888888776666
Q ss_pred ccccCCCCCCC
Q 009258 343 INQAGDEICPA 353 (539)
Q Consensus 343 ~~~~~~~~~~~ 353 (539)
.++|.+..+..
T Consensus 645 ~gr~~~~e~a~ 655 (1005)
T KOG1080|consen 645 EGRWVHVECAW 655 (1005)
T ss_pred ccchhhhhchh
Confidence 77777766554
No 102
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=47.42 E-value=11 Score=26.76 Aligned_cols=27 Identities=30% Similarity=0.743 Sum_probs=20.4
Q ss_pred eccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 454 MCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 454 ~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|..|++.||+. ..+|+.+..|..|-.
T Consensus 3 ~C~~Cg~~Yh~~------~~pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 3 ICPKCGRIYHIE------FNPPKVEGVCDNCGG 29 (36)
T ss_dssp EETTTTEEEETT------TB--SSTTBCTTTTE
T ss_pred CcCCCCCccccc------cCCCCCCCccCCCCC
Confidence 588999999976 455677789999865
No 103
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=47.23 E-value=9.1 Score=31.95 Aligned_cols=29 Identities=24% Similarity=0.776 Sum_probs=24.3
Q ss_pred ccccccccccCCCCceeeC--cCCCcCcccccC
Q 009258 270 HTCRQCEEKAGEKDGLVCD--SCEEMYHLSCIE 300 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~ 300 (539)
..|.+|++. .|..+-|. +|.+.||+.|..
T Consensus 37 ~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 37 LKCSICKKK--GGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCcCCCCC--CCeEEEEeCCCCCcEEChHHHc
Confidence 379999983 37888897 699999999984
No 104
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=47.01 E-value=8.8 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.683 Sum_probs=16.3
Q ss_pred CCCcccCCccccCCCCCCcccccccccC
Q 009258 308 PKSWYCARCTAKGFGSPHENCIVCERMN 335 (539)
Q Consensus 308 ~g~W~C~~C~~~~~~~~~~~C~vC~~l~ 335 (539)
.|+|.|+.|..... .....|+.|+...
T Consensus 2 ~g~W~C~~C~~~N~-~~~~~C~~C~~~r 28 (30)
T PF00641_consen 2 EGDWKCPSCTFMNP-ASRSKCVACGAPR 28 (30)
T ss_dssp SSSEEETTTTEEEE-SSSSB-TTT--BT
T ss_pred CcCccCCCCcCCch-HHhhhhhCcCCCC
Confidence 57899999985542 2345688877543
No 105
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=46.53 E-value=16 Score=35.83 Aligned_cols=42 Identities=24% Similarity=0.691 Sum_probs=31.2
Q ss_pred Cccccccccccc-----CCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 268 KVHTCRQCEEKA-----GEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 268 ~~~~C~~C~~~~-----~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
+..+|.+|...+ +.+....|..|...||..|... =.||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 355788887642 2457889999999999999942 22998863
No 106
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.77 E-value=6.9 Score=39.86 Aligned_cols=60 Identities=15% Similarity=0.356 Sum_probs=37.6
Q ss_pred ccccccccCCCCC-------ceeccCCCCcccccCCCCCCCCCCCCCcccCCCcchhHHHHHHHHHHhh
Q 009258 439 LCRACLTDKDDEK-------IVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAGIQEIRRVKKAYMH 500 (539)
Q Consensus 439 ~C~~C~~~~~~~~-------ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~~~~~~~~~~~~~~ 500 (539)
.|.+|++.-+.+. -..=-.|+..||-+|..- --+-..+-.||-|++++.-.+-.++++++
T Consensus 226 vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrG--WcivGKkqtCPYCKekVdl~rmfsnpWek 292 (328)
T KOG1734|consen 226 VCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRG--WCIVGKKQTCPYCKEKVDLKRMFSNPWEK 292 (328)
T ss_pred hhHhhcchheeecchhhhhhhheeeecccchHHHhhhh--heeecCCCCCchHHHHhhHhhhccCcccc
Confidence 6889987654322 122236999999999864 12222346899999876655555555543
No 107
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=44.63 E-value=12 Score=32.98 Aligned_cols=61 Identities=26% Similarity=0.731 Sum_probs=37.6
Q ss_pred cccccccccccCCCCceee------CcC---CCcCcccccCCCC-----CCCCCCCcccCCccccCCCCCCccccccccc
Q 009258 269 VHTCRQCEEKAGEKDGLVC------DSC---EEMYHLSCIEPAF-----KDIPPKSWYCARCTAKGFGSPHENCIVCERM 334 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~C------d~C---~~~~H~~Cl~P~l-----~~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l 334 (539)
...|-.|..+..+. ...| ..| ...|=-.||.-.. ..+..++|.||.|...= +|..|.+-
T Consensus 7 g~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC------nCs~Crrk 79 (105)
T PF10497_consen 7 GKTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC------NCSFCRRK 79 (105)
T ss_pred CCCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee------CCHhhhcc
Confidence 34678887754433 3456 556 6666666654322 23456789999998533 67777765
Q ss_pred CC
Q 009258 335 NA 336 (539)
Q Consensus 335 ~~ 336 (539)
.+
T Consensus 80 ~g 81 (105)
T PF10497_consen 80 RG 81 (105)
T ss_pred CC
Confidence 55
No 108
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=38.55 E-value=16 Score=39.83 Aligned_cols=53 Identities=26% Similarity=0.611 Sum_probs=35.6
Q ss_pred cCcccccccccccC---CCCCceeccCCCCcccccCCCC-CC------CCC----CCCCcccCCCcc
Q 009258 434 FCPSCLCRACLTDK---DDEKIVMCDGCDQGYHLYCMDP-PR------TSV----PKGNWFCRKCDA 486 (539)
Q Consensus 434 ~Cp~C~C~~C~~~~---~~~~ll~Cd~C~~~yH~~Cl~P-pl------~~~----P~~~W~C~~C~~ 486 (539)
+|..|-|-+|.+-+ ++-.-+.||.|+.+-|+.|--- .+ ..- ....++|..|-.
T Consensus 125 FC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~ 191 (446)
T PF07227_consen 125 FCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGK 191 (446)
T ss_pred ccccCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCC
Confidence 45667788887643 3455688999999999999432 11 111 123599999963
No 109
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=38.50 E-value=18 Score=23.13 Aligned_cols=24 Identities=29% Similarity=0.901 Sum_probs=15.3
Q ss_pred CCcccCCccccCCCCCCcccccccc
Q 009258 309 KSWYCARCTAKGFGSPHENCIVCER 333 (539)
Q Consensus 309 g~W~C~~C~~~~~~~~~~~C~vC~~ 333 (539)
|+|.|+.|..... .....|..|+.
T Consensus 1 g~W~C~~C~~~N~-~~~~~C~~C~~ 24 (26)
T smart00547 1 GDWECPACTFLNF-ASRSKCFACGA 24 (26)
T ss_pred CcccCCCCCCcCh-hhhccccccCC
Confidence 5799999975442 23346666653
No 110
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=37.81 E-value=23 Score=38.75 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=38.5
Q ss_pred CCCCccccccccccc---CCCCceeeCcCCCcCcccccC------CCC--CC---CCCCCcccCCcccc
Q 009258 265 DVYKVHTCRQCEEKA---GEKDGLVCDSCEEMYHLSCIE------PAF--KD---IPPKSWYCARCTAK 319 (539)
Q Consensus 265 ~~~~~~~C~~C~~~~---~~~~ll~Cd~C~~~~H~~Cl~------P~l--~~---~P~g~W~C~~C~~~ 319 (539)
+-.+.|.|.+|.+-+ ++-..+.||.|..+-|+.|.- ++. .. ..++.++|..|-..
T Consensus 124 gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 124 GFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CccccCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 355788888998743 355679999999999999952 221 11 23456999999754
No 111
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=37.39 E-value=26 Score=36.53 Aligned_cols=29 Identities=28% Similarity=0.833 Sum_probs=20.3
Q ss_pred cccCCCCCCCCCCCCCcccCCCcchhHHHHHH
Q 009258 463 HLYCMDPPRTSVPKGNWFCRKCDAGIQEIRRV 494 (539)
Q Consensus 463 H~~Cl~Ppl~~~P~~~W~C~~C~~~~~~~~~~ 494 (539)
|.+|++=.... .+-+|+.|..++++|.+.
T Consensus 111 HvFCl~CAr~~---~dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 111 HVFCLECARSD---SDKICPLCDDRVQRIEQI 139 (389)
T ss_pred hhhhhhhhhcC---ccccCcCcccHHHHHHHh
Confidence 77777754322 245899999888887765
No 112
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=36.91 E-value=27 Score=32.06 Aligned_cols=59 Identities=15% Similarity=0.274 Sum_probs=39.4
Q ss_pred HHHHHHhcchhHHHHHHHhhh--cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHH
Q 009258 144 AFLEIITSEKFTLLCKVLLGN--FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKF 206 (539)
Q Consensus 144 ~l~~~~~s~~~~~~~~~l~~~--~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl 206 (539)
+|--...+..++.+-.++... .++. .|.||.-+..+|.+|.| .+...|.+||=.|....
T Consensus 31 ~l~g~~~~~~~~~~~~~~~~~~~~~~~---~p~dL~~V~kkl~~G~Y-~sv~~F~~DvvkIiqa~ 91 (131)
T cd05493 31 SLPGRKSPVTPEVLQGLLSSEVKQEEL---PPLDLEAVGKKLEAGFY-TSVLDFSDDIVKIIQAA 91 (131)
T ss_pred hhhcccccCCcccccccccchhcccCC---CcccHHHHHHHHhccce-ehHHHHHHHHHHHHHHH
Confidence 444445555555443222222 2222 39999999999999977 78888999998886663
No 113
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=35.81 E-value=23 Score=37.73 Aligned_cols=37 Identities=27% Similarity=0.658 Sum_probs=31.9
Q ss_pred CceeccCCCCcccccC--CCCCCCCCCC-CCcccCCCcch
Q 009258 451 KIVMCDGCDQGYHLYC--MDPPRTSVPK-GNWFCRKCDAG 487 (539)
Q Consensus 451 ~ll~Cd~C~~~yH~~C--l~Ppl~~~P~-~~W~C~~C~~~ 487 (539)
.++.|+.|..+||-.| .+.+-...|. ..|+|..|...
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~ 113 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEA 113 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchh
Confidence 7899999999999999 9988777766 46999999753
No 114
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=35.46 E-value=27 Score=23.38 Aligned_cols=29 Identities=24% Similarity=0.553 Sum_probs=21.6
Q ss_pred ccccccccCCCCCceeccCCCCcccccCC
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCM 467 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl 467 (539)
.|.+|++..++...-.|+.|.-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 37788766544338889999988898873
No 115
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=35.41 E-value=12 Score=40.54 Aligned_cols=93 Identities=22% Similarity=0.478 Sum_probs=55.1
Q ss_pred CccccccCcccccCCCcccccCCcccCCccccccccCc----------ccccCCCCcccCccc-------ccccccccC-
Q 009258 386 ANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP----------KQLKRYGPCWFCPSC-------LCRACLTDK- 447 (539)
Q Consensus 386 ~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~----------~~~~~~~~~W~Cp~C-------~C~~C~~~~- 447 (539)
...|..|+....+ +++.- + ++.||+.|.+- .......+..+|..+ +|.+|.+.=
T Consensus 334 lekC~~Cg~~I~d---~iLrA----~-GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~ 405 (468)
T KOG1701|consen 334 LEKCNKCGEPIMD---RILRA----L-GKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPIL 405 (468)
T ss_pred HHHHhhhhhHHHH---HHHHh----c-ccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCcc
Confidence 4678888887542 33322 3 78899877642 123344567888766 399997531
Q ss_pred --C-CCCceeccCCCCcccccCCCC-----CCCCCCC--------CCcccCCCcc
Q 009258 448 --D-DEKIVMCDGCDQGYHLYCMDP-----PRTSVPK--------GNWFCRKCDA 486 (539)
Q Consensus 448 --~-~~~ll~Cd~C~~~yH~~Cl~P-----pl~~~P~--------~~W~C~~C~~ 486 (539)
+ .+..+.-..=|+-||..|..= .|+.-+. +.-+|..|..
T Consensus 406 P~~G~~etvRvvamdr~fHv~CY~CEDCg~~LS~e~e~qgCyPld~HllCk~Ch~ 460 (468)
T KOG1701|consen 406 PRDGKDETVRVVAMDRDFHVNCYKCEDCGLLLSSEEEGQGCYPLDGHLLCKTCHL 460 (468)
T ss_pred CCCCCcceEEEEEccccccccceehhhcCccccccCCCCcceeccCceeechhhh
Confidence 1 233555555678899988542 3332222 2477777754
No 116
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=35.16 E-value=12 Score=25.92 Aligned_cols=41 Identities=27% Similarity=0.605 Sum_probs=26.9
Q ss_pred ccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcc
Q 009258 272 CRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCT 317 (539)
Q Consensus 272 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 317 (539)
|.+|...- ...+.-..|.-.||..|+...+.. +...||.|.
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~ 42 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCR 42 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh---CcCCCCCCC
Confidence 67776532 233444568889999999655443 456788886
No 117
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.05 E-value=4.1 Score=40.30 Aligned_cols=45 Identities=27% Similarity=0.693 Sum_probs=29.4
Q ss_pred ccccccccC---CCCCceeccCCCCcccccCCCCCCCCCCCC----CcccCCCcch
Q 009258 439 LCRACLTDK---DDEKIVMCDGCDQGYHLYCMDPPRTSVPKG----NWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~---~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~----~W~C~~C~~~ 487 (539)
.|..|+..- +...++ |-..||..|++..-..+|.. .+.||.|.+.
T Consensus 52 NC~LC~t~La~gdt~RLv----CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~e 103 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLV----CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQE 103 (299)
T ss_pred CCceeCCccccCcceeeh----hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCc
Confidence 366776543 333333 78899999999744444432 4899999753
No 118
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=33.46 E-value=18 Score=41.94 Aligned_cols=45 Identities=24% Similarity=0.536 Sum_probs=39.6
Q ss_pred hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 163 GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 163 ~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
.||..| ++-|||+.|+-.++..+-| .+-+.|+.|+..+|+|+..+
T Consensus 317 ~~y~~i-~k~pmdl~t~~~k~~~~~y-~~~~~fv~d~~~~~~n~~~~ 361 (720)
T KOG1472|consen 317 PNYYQI-IKAPMDLSTELKKLKSGPY-CSKEEFVNDLMLIWRNCEKY 361 (720)
T ss_pred cchHHh-hhcchHHHHHHHHhccccc-cchhHHHHHHHHHHhcchhh
Confidence 457777 8899999999999999988 66778999999999998776
No 119
>COG1773 Rubredoxin [Energy production and conversion]
Probab=32.06 E-value=38 Score=26.40 Aligned_cols=9 Identities=33% Similarity=1.479 Sum_probs=7.8
Q ss_pred CcccCCCcc
Q 009258 478 NWFCRKCDA 486 (539)
Q Consensus 478 ~W~C~~C~~ 486 (539)
+|.||.|-.
T Consensus 36 ~w~CP~Cg~ 44 (55)
T COG1773 36 DWVCPECGV 44 (55)
T ss_pred ccCCCCCCC
Confidence 699999974
No 120
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.95 E-value=24 Score=37.56 Aligned_cols=46 Identities=28% Similarity=0.657 Sum_probs=34.0
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
.|.+|...-..+..|.==-|.+.||..|.+|=|..- .=+||-|+..
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 588888766666666567899999999999854332 2379999763
No 121
>PF12773 DZR: Double zinc ribbon
Probab=29.83 E-value=55 Score=24.15 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=6.1
Q ss_pred CCcccCCccc
Q 009258 309 KSWYCARCTA 318 (539)
Q Consensus 309 g~W~C~~C~~ 318 (539)
..++|+.|-.
T Consensus 28 ~~~~C~~Cg~ 37 (50)
T PF12773_consen 28 SKKICPNCGA 37 (50)
T ss_pred CCCCCcCCcC
Confidence 4566776654
No 122
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=29.55 E-value=19 Score=27.09 Aligned_cols=33 Identities=30% Similarity=0.857 Sum_probs=20.0
Q ss_pred cccccCcccccCCCcccccCCcccCC--ccccccccCc
Q 009258 388 LCKICGRKVEESSDKFRSCEHAFCYS--KFYHERCLTP 423 (539)
Q Consensus 388 ~C~iCgs~~~~~~~~ll~C~~~~C~~--k~yH~~Cl~~ 423 (539)
.|.||.......+.-...|. |.| +++|..||..
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~---C~G~~~~vH~~Cl~~ 35 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCR---CKGSLKYVHQECLER 35 (49)
T ss_pred CccCCCCCCCCCCeeEeccc---cCCchhHHHHHHHHH
Confidence 47788773222233334454 544 7899999985
No 123
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.12 E-value=93 Score=32.06 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=25.8
Q ss_pred cccccccccCCCCceeeCc-CCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 271 TCRQCEEKAGEKDGLVCDS-CEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~-C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
.|.+||+ ...+-+--+ |...|-.+|+ .....-+..+-||.|-...
T Consensus 241 ~C~~Cg~---~PtiP~~~~~C~HiyCY~Ci--~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 241 ECPVCGE---PPTIPHVIGKCGHIYCYYCI--ATSRLWDASFTCPLCGENV 286 (298)
T ss_pred eeeccCC---CCCCCeeeccccceeehhhh--hhhhcchhhcccCccCCCC
Confidence 6999998 333333333 5555555666 2223334457899886443
No 124
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=28.57 E-value=23 Score=25.65 Aligned_cols=23 Identities=43% Similarity=0.998 Sum_probs=15.3
Q ss_pred ccccCcccc-cCCCcccccCCccc
Q 009258 389 CKICGRKVE-ESSDKFRSCEHAFC 411 (539)
Q Consensus 389 C~iCgs~~~-~~~~~ll~C~~~~C 411 (539)
|.+|..... .....++.|.|.+|
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C 25 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFC 25 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHH
Confidence 667777662 22557788888776
No 125
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=27.81 E-value=35 Score=25.42 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=22.0
Q ss_pred ccccccccC--CCCCceeccCCCCcccccCCCC
Q 009258 439 LCRACLTDK--DDEKIVMCDGCDQGYHLYCMDP 469 (539)
Q Consensus 439 ~C~~C~~~~--~~~~ll~Cd~C~~~yH~~Cl~P 469 (539)
.|.+|++.- ...+-+.|..|....|..|+.-
T Consensus 13 ~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 13 YCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp B-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 355665433 4567899999999999999864
No 126
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=27.67 E-value=52 Score=37.32 Aligned_cols=41 Identities=27% Similarity=0.707 Sum_probs=29.3
Q ss_pred cccCcccc----------cccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 432 CWFCPSCL----------CRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 432 ~W~Cp~C~----------C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
...|+.|. |..| +..+..+.|+.|+..++.. .+..|+.|..
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c---~G~gkv~~c~~cG~~~~~~-----------~~~lc~~c~~ 103 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPEC---GGTGKVLTCDICGDIIVPW-----------EEGLCPECRR 103 (715)
T ss_pred CCCCCeeccceeEEEEeecccC---CCceeEEeeccccceecCc-----------ccccChhHhh
Confidence 56788883 7788 5667899999998876542 1227888853
No 127
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.03 E-value=50 Score=38.91 Aligned_cols=54 Identities=22% Similarity=0.455 Sum_probs=35.1
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcchhHHHHHHHHHHhhh
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAGIQEIRRVKKAYMHK 501 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~~~~~~~~~~~~~~~ 501 (539)
.|..|+..- +--..==.|.+.||..|+. .+.-.||.|..+.......++..+..
T Consensus 842 kCs~C~~~L--dlP~VhF~CgHsyHqhC~e-------~~~~~CP~C~~e~~~~m~l~~s~~q~ 895 (933)
T KOG2114|consen 842 KCSACEGTL--DLPFVHFLCGHSYHQHCLE-------DKEDKCPKCLPELRGVMDLKRSQEQK 895 (933)
T ss_pred eecccCCcc--ccceeeeecccHHHHHhhc-------cCcccCCccchhhhhhHHHHHHHHHh
Confidence 577885432 2223345799999999998 45578999987555444555544433
No 128
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=25.10 E-value=77 Score=24.11 Aligned_cols=33 Identities=36% Similarity=0.811 Sum_probs=18.3
Q ss_pred eccCCCCcccccCCCC--------CCCCCCCCCcccCCCcch
Q 009258 454 MCDGCDQGYHLYCMDP--------PRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 454 ~Cd~C~~~yH~~Cl~P--------pl~~~P~~~W~C~~C~~~ 487 (539)
.|..|+-.|...==+| +...+|. +|.||.|...
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~-~w~CP~C~a~ 43 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDLPD-DWVCPVCGAG 43 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHCCC-CCCCCCCCCc
Confidence 3566666665543222 1122333 7999999753
No 129
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=25.09 E-value=52 Score=35.29 Aligned_cols=22 Identities=9% Similarity=0.393 Sum_probs=18.0
Q ss_pred CcHHHHHHHHHHHhhhhhhHHH
Q 009258 34 GITMVLFFLILIFHLLQNFRDV 55 (539)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~ 55 (539)
-|++.+|.+.+++-+|+||+..
T Consensus 423 rt~~t~~LV~l~~~~wkhwd~i 444 (455)
T KOG3850|consen 423 RTASTFFLVFLLAFFWKHWDAI 444 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888899999999965
No 130
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=24.88 E-value=14 Score=26.06 Aligned_cols=28 Identities=36% Similarity=0.891 Sum_probs=17.2
Q ss_pred ccccCcccccCCCcccccCCcccCCccccccccCc
Q 009258 389 CKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP 423 (539)
Q Consensus 389 C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~ 423 (539)
|.+|...... ...++.|.|.+| ..|+..
T Consensus 1 C~iC~~~~~~-~~~~~~C~H~fC------~~C~~~ 28 (41)
T PF00097_consen 1 CPICLEPFED-PVILLPCGHSFC------RDCLRK 28 (41)
T ss_dssp ETTTSSBCSS-EEEETTTSEEEE------HHHHHH
T ss_pred CCcCCccccC-CCEEecCCCcch------HHHHHH
Confidence 6677776543 234788887665 456654
No 131
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=24.28 E-value=26 Score=31.29 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=2.9
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHhhh
Q 009258 20 RTHLYAIFEHALSSGITMVLFFLILIFHLL 49 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (539)
.-|.|+-+|-|+--||..|...|.++|-+|
T Consensus 16 ~~~syitAEEAaGIGiL~VILgiLLliGCW 45 (118)
T PF14991_consen 16 KGHSYITAEEAAGIGILIVILGILLLIGCW 45 (118)
T ss_dssp ------------SSS---------------
T ss_pred CCcceeeHHHhccceeHHHHHHHHHHHhhe
Confidence 358999999999999999999999999998
No 132
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=24.27 E-value=43 Score=37.35 Aligned_cols=31 Identities=23% Similarity=0.739 Sum_probs=16.6
Q ss_pred CceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 283 DGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 283 ~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
.|.+|..|...-...|+..- -..||||+|..
T Consensus 4 ~L~fC~~C~~irc~~c~~~E-----i~~~yCp~CL~ 34 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE-----IDSYYCPNCLF 34 (483)
T ss_pred cceecccccccCChhhcccc-----cceeECccccc
Confidence 45556555554445555221 13577777753
No 133
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=24.07 E-value=80 Score=36.21 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=48.7
Q ss_pred cccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHH
Q 009258 169 KVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYI 229 (539)
Q Consensus 169 ~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~ 229 (539)
.+..||.|..|..|+..|.|.. -.-|.+|+..+.+|++.+ ++++...+..|...+-....
T Consensus 94 ~i~~pisl~~ik~kv~k~~y~~-~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 94 VIQQPISLDQIKRKVKKGRYKR-LSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred eecCcccHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 3788999999999999999944 566999999999998775 67888887777766555443
No 134
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=23.93 E-value=25 Score=28.57 Aligned_cols=26 Identities=27% Similarity=0.738 Sum_probs=17.8
Q ss_pred CcCCCcCcccccCCCCCCCCCCCcccCCcc
Q 009258 288 DSCEEMYHLSCIEPAFKDIPPKSWYCARCT 317 (539)
Q Consensus 288 d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 317 (539)
..|.-.||..|+..-+..- ..||.|+
T Consensus 48 ~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 4699999999996555333 3788774
No 135
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=23.34 E-value=34 Score=40.19 Aligned_cols=67 Identities=22% Similarity=0.578 Sum_probs=42.1
Q ss_pred cccccccccc-cCCCCceeeCcCCCcCcccccCCCCCC---CCCCCcccCCccccCC-CCCCcccccccccCC
Q 009258 269 VHTCRQCEEK-AGEKDGLVCDSCEEMYHLSCIEPAFKD---IPPKSWYCARCTAKGF-GSPHENCIVCERMNA 336 (539)
Q Consensus 269 ~~~C~~C~~~-~~~~~ll~Cd~C~~~~H~~Cl~P~l~~---~P~g~W~C~~C~~~~~-~~~~~~C~vC~~l~~ 336 (539)
...|.+|-.. .....+--|.+|...||++|+.-.-.. .-...|-||.|.+... ......| .|+++..
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y~C-~CGk~~n 262 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTYLC-FCGKVKN 262 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcccce-ecCcccC
Confidence 4479999763 334567779999999999998533221 1113599999985442 1223344 3555444
No 136
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=23.13 E-value=68 Score=37.09 Aligned_cols=47 Identities=21% Similarity=0.602 Sum_probs=28.0
Q ss_pred cccccccccCCCCceeeCcCCCcCc-ccccCCCCCCCCCCCcccCCcccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYH-LSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H-~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
.|..||.. ......+|..|....- ..|..-+ ..+|.+.=||++|-..
T Consensus 3 ~Cp~Cg~~-n~~~akFC~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 3 ICPQCQFE-NPNNNRFCQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAE 50 (645)
T ss_pred cCCCCCCc-CCCCCccccccCCCCCCCcCCCCC-CCCCcccccccccCCc
Confidence 47777663 2444567777765532 3454433 3467777888888543
No 137
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=22.33 E-value=33 Score=39.54 Aligned_cols=58 Identities=19% Similarity=0.420 Sum_probs=47.8
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhh
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELS 224 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s 224 (539)
|+.+ +.+|||++||-.||.+ .|+.+-..-.+|...+|.|++.+ +.++...++.+..++
T Consensus 27 ~~~~-~~~~~d~~~~~~~~e~-n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~ 87 (640)
T KOG1474|consen 27 YYEI-IKRPMDIGTIEKRVEN-NYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLF 87 (640)
T ss_pred hhcc-cCCCCCchhhhhhhcc-CccccHhhhhhhccccccchhcccCCccchhhccccchhhc
Confidence 6777 9999999999999999 99888777788888999998754 556777777777654
No 138
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.33 E-value=40 Score=25.34 Aligned_cols=9 Identities=44% Similarity=1.457 Sum_probs=5.8
Q ss_pred CcccCCCcc
Q 009258 478 NWFCRKCDA 486 (539)
Q Consensus 478 ~W~C~~C~~ 486 (539)
+|.||.|..
T Consensus 34 ~w~CP~C~a 42 (47)
T PF00301_consen 34 DWVCPVCGA 42 (47)
T ss_dssp T-B-TTTSS
T ss_pred CCcCcCCCC
Confidence 599999975
No 139
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=22.18 E-value=66 Score=23.91 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=23.7
Q ss_pred cccccccccc--CCCCceeeCcCCCcCcccccC
Q 009258 270 HTCRQCEEKA--GEKDGLVCDSCEEMYHLSCIE 300 (539)
Q Consensus 270 ~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~ 300 (539)
..|.+|++.= ....-+.|..|....|..|+.
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 3799998844 455679999999999999994
No 140
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.11 E-value=63 Score=36.21 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=35.9
Q ss_pred CCCcccCcccccccccccCCCCCceeccCCCCcccccCCCCCCCCCCC--CCcccCCCc
Q 009258 429 YGPCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPK--GNWFCRKCD 485 (539)
Q Consensus 429 ~~~~W~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~--~~W~C~~C~ 485 (539)
....|+|..| .-++..+.|+.|-+.||..|+.|. ..++. ..|.|+.|+
T Consensus 57 ~N~d~~cfec--------hlpg~vl~c~vc~Rs~h~~c~sp~-~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 57 SNIDPFCFEC--------HLPGAVLKCIVCHRSFHENCQSPD-PQKRNYSVPSDKPQPY 106 (588)
T ss_pred cCCCcccccc--------cCCcceeeeehhhccccccccCcc-hhhccccccccCCccc
Confidence 3456877776 345788999999999999999984 33333 359999886
No 141
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=21.04 E-value=50 Score=31.31 Aligned_cols=65 Identities=25% Similarity=0.603 Sum_probs=40.6
Q ss_pred CccccccCcccccCCCcccccCCcccC--CccccccccCcccccCCCCcccCcccccccccccCCCCCceeccCCCCccc
Q 009258 386 ANLCKICGRKVEESSDKFRSCEHAFCY--SKFYHERCLTPKQLKRYGPCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYH 463 (539)
Q Consensus 386 ~~~C~iCgs~~~~~~~~ll~C~~~~C~--~k~yH~~Cl~~~~~~~~~~~W~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~yH 463 (539)
...|.||....+. ....|. |. .++.|..||.. |. +.+.-..|..|...|.
T Consensus 8 ~~~CRIC~~~~~~---~~~PC~---CkGs~k~VH~sCL~r---------Wi-------------~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 8 DKCCWICKDEYDV---VTNYCN---CKNENKIVHKECLEE---------WI-------------NTSKNKSCKICNGPYN 59 (162)
T ss_pred CCeeEecCCCCCC---ccCCcc---cCCCchHHHHHHHHH---------HH-------------hcCCCCcccccCCeEE
Confidence 4689999766432 223454 53 36779999973 32 1123445888888887
Q ss_pred ccCCCCCCCCCCCCCcccCC
Q 009258 464 LYCMDPPRTSVPKGNWFCRK 483 (539)
Q Consensus 464 ~~Cl~Ppl~~~P~~~W~C~~ 483 (539)
+.- ...|-.+|.|+.
T Consensus 60 i~~-----~~kpl~~W~~~~ 74 (162)
T PHA02825 60 IKK-----NYKKCTKWRCSF 74 (162)
T ss_pred EEE-----ecCCCccccccC
Confidence 762 334667899975
No 142
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=21.03 E-value=80 Score=35.44 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=35.8
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCCCC--CCcccCCcccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPP--KSWYCARCTAK 319 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~--g~W~C~~C~~~ 319 (539)
+|.-|.. ++..|.|+.|-+.||..|+.|.- .++. ..|.|+.|..-
T Consensus 62 ~cfechl---pg~vl~c~vc~Rs~h~~c~sp~~-q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 62 FCFECHL---PGAVLKCIVCHRSFHENCQSPDP-QKRNYSVPSDKPQPYSF 108 (588)
T ss_pred ccccccC---CcceeeeehhhccccccccCcch-hhccccccccCCccccc
Confidence 7999988 78899999999999999997654 3333 35888888643
No 143
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=20.94 E-value=20 Score=26.24 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=15.8
Q ss_pred Cceecc--CCCCcccccCCCCCCCCCCCCCcccCCC
Q 009258 451 KIVMCD--GCDQGYHLYCMDPPRTSVPKGNWFCRKC 484 (539)
Q Consensus 451 ~ll~Cd--~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C 484 (539)
.-+.|. .|+..+|.+|+.--....+.. .||.|
T Consensus 10 ~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 10 QGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp SSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred eeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 346677 699999999987543333222 78876
No 144
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=20.14 E-value=84 Score=28.55 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=21.8
Q ss_pred chhcchhhHHHHhhhhHHHHHHHHHHH
Q 009258 5 FVEATWSHAEFVRNYRTHLYAIFEHAL 31 (539)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (539)
|||-|..|. |.+-||--..+.||.++
T Consensus 15 FIEPt~kHs-lL~~~kY~~Iv~FEi~v 40 (128)
T PHA02689 15 FVEPTIAHS-LLRAESYLAIAVLELLL 40 (128)
T ss_pred Eeccchhhh-hhccchhHHHHHHHHHH
Confidence 899999995 77789877778899876
Done!