Query 009258
Match_columns 539
No_of_seqs 330 out of 2112
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.7 6.8E-18 2.3E-22 148.0 6.4 98 384-486 5-103 (111)
2 2kwj_A Zinc finger protein DPF 99.7 1.4E-17 4.7E-22 146.9 3.7 98 387-487 2-108 (114)
3 3v43_A Histone acetyltransfera 99.7 5.4E-17 1.8E-21 142.6 5.4 99 385-486 4-111 (112)
4 2ysm_A Myeloid/lymphoid or mix 99.5 1E-14 3.6E-19 127.7 7.7 101 268-443 6-107 (111)
5 2e6s_A E3 ubiquitin-protein li 99.5 5.1E-14 1.7E-18 115.3 6.9 56 431-486 20-76 (77)
6 3asl_A E3 ubiquitin-protein li 99.5 2.1E-14 7.2E-19 115.6 4.4 56 431-486 12-68 (70)
7 3shb_A E3 ubiquitin-protein li 99.4 4E-14 1.4E-18 115.9 4.4 56 431-486 20-76 (77)
8 1f62_A Transcription factor WS 99.3 5E-13 1.7E-17 100.8 3.4 48 271-318 2-49 (51)
9 2lri_C Autoimmune regulator; Z 99.3 1.4E-12 4.7E-17 103.7 4.5 48 270-320 13-60 (66)
10 1fp0_A KAP-1 corepressor; PHD 99.3 3.2E-12 1.1E-16 106.8 6.5 50 267-319 23-72 (88)
11 1mm2_A MI2-beta; PHD, zinc fin 99.3 2E-12 6.8E-17 101.2 4.9 50 268-320 8-57 (61)
12 4gne_A Histone-lysine N-methyl 99.3 2.6E-12 9E-17 111.4 5.6 45 268-317 14-60 (107)
13 2l5u_A Chromodomain-helicase-D 99.3 2.3E-12 7.9E-17 100.9 3.7 50 268-320 10-59 (61)
14 3v43_A Histone acetyltransfera 99.2 2.7E-12 9.4E-17 112.5 3.7 96 270-439 6-110 (112)
15 2kwj_A Zinc finger protein DPF 99.2 2E-12 6.7E-17 113.8 2.7 94 271-439 3-106 (114)
16 3asl_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 102.5 3.9 53 266-318 15-68 (70)
17 2e6s_A E3 ubiquitin-protein li 99.2 5.1E-12 1.7E-16 103.4 4.8 52 267-318 24-76 (77)
18 1xwh_A Autoimmune regulator; P 99.2 2.7E-12 9.1E-17 102.1 2.7 50 268-320 7-56 (66)
19 1f62_A Transcription factor WS 99.2 2.8E-12 9.6E-17 96.6 2.6 48 439-486 2-49 (51)
20 2yql_A PHD finger protein 21A; 99.2 3.5E-12 1.2E-16 98.1 2.9 48 268-318 8-55 (56)
21 3ask_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 123.2 4.3 56 431-486 168-224 (226)
22 2puy_A PHD finger protein 21A; 99.2 5E-12 1.7E-16 98.5 2.6 49 268-319 4-52 (60)
23 2e6r_A Jumonji/ARID domain-con 99.2 5.3E-12 1.8E-16 106.9 2.8 56 431-486 9-65 (92)
24 2e6r_A Jumonji/ARID domain-con 99.2 5.1E-12 1.7E-16 107.0 2.5 52 268-319 15-66 (92)
25 3shb_A E3 ubiquitin-protein li 99.2 1.2E-11 4.1E-16 101.1 3.7 55 264-318 21-76 (77)
26 2yt5_A Metal-response element- 99.1 1.2E-11 4E-16 98.1 1.1 53 268-320 5-62 (66)
27 2lri_C Autoimmune regulator; Z 99.1 2.9E-11 9.8E-16 96.0 2.8 45 439-486 14-58 (66)
28 1mm2_A MI2-beta; PHD, zinc fin 99.1 8.1E-11 2.8E-15 92.0 4.5 46 439-487 11-56 (61)
29 1wev_A Riken cDNA 1110020M19; 99.1 2.4E-11 8.2E-16 102.0 1.0 52 269-320 16-73 (88)
30 1fp0_A KAP-1 corepressor; PHD 99.0 1.4E-10 4.8E-15 96.9 5.4 45 439-486 27-71 (88)
31 2ku3_A Bromodomain-containing 99.0 4E-11 1.4E-15 96.6 1.6 50 268-319 15-66 (71)
32 3u5n_A E3 ubiquitin-protein li 99.0 1.3E-10 4.4E-15 112.5 4.6 51 267-320 5-55 (207)
33 3o36_A Transcription intermedi 99.0 2.4E-10 8.2E-15 108.5 6.3 50 268-320 3-52 (184)
34 2puy_A PHD finger protein 21A; 99.0 4.9E-11 1.7E-15 92.9 1.2 45 439-486 7-51 (60)
35 3ask_A E3 ubiquitin-protein li 99.0 1.2E-10 3.9E-15 113.3 4.0 51 268-318 173-224 (226)
36 2yql_A PHD finger protein 21A; 99.0 1.2E-10 4.1E-15 89.4 2.4 44 439-485 11-54 (56)
37 1xwh_A Autoimmune regulator; P 99.0 1.4E-10 4.7E-15 92.2 2.3 45 439-486 10-54 (66)
38 2l5u_A Chromodomain-helicase-D 99.0 1.4E-10 4.9E-15 90.6 2.3 45 439-486 13-57 (61)
39 2l43_A N-teminal domain from h 99.0 1E-10 3.5E-15 98.2 0.8 51 268-320 24-76 (88)
40 1wev_A Riken cDNA 1110020M19; 98.9 1.5E-10 5.1E-15 97.2 1.3 48 439-486 18-71 (88)
41 2k16_A Transcription initiatio 98.9 3E-10 1E-14 92.3 2.4 53 268-320 17-69 (75)
42 2ro1_A Transcription intermedi 98.9 4.9E-10 1.7E-14 106.9 4.2 47 270-319 3-49 (189)
43 2yt5_A Metal-response element- 98.9 3.3E-10 1.1E-14 89.7 0.6 48 439-486 8-60 (66)
44 2ku3_A Bromodomain-containing 98.8 4.1E-10 1.4E-14 90.6 0.2 47 439-487 18-66 (71)
45 2k16_A Transcription initiatio 98.8 8.3E-10 2.8E-14 89.7 0.4 49 439-487 20-68 (75)
46 2lv9_A Histone-lysine N-methyl 98.7 6.2E-09 2.1E-13 89.0 4.2 45 442-487 32-76 (98)
47 2l43_A N-teminal domain from h 98.7 1.7E-09 5.7E-14 90.7 -0.1 46 439-486 27-74 (88)
48 2ouo_A HUNK1 protein, bromodom 98.7 1.4E-08 4.8E-13 91.1 5.7 92 137-230 23-126 (130)
49 1wen_A Inhibitor of growth fam 98.7 1.3E-08 4.5E-13 81.9 4.9 49 268-320 15-66 (71)
50 2lv9_A Histone-lysine N-methyl 98.7 1.1E-08 3.7E-13 87.5 4.6 48 271-320 30-77 (98)
51 3u5n_A E3 ubiquitin-protein li 98.7 7.3E-09 2.5E-13 100.1 3.3 45 439-486 9-53 (207)
52 3jvl_A Bromodomain-containing 98.7 1.9E-08 6.6E-13 88.9 5.4 95 135-231 8-114 (120)
53 3g0l_A Hwalp4, bromodomain adj 98.6 2.8E-08 9.7E-13 87.4 5.9 95 135-232 12-114 (117)
54 3iu5_A Protein polybromo-1; PB 98.6 4.7E-08 1.6E-12 85.9 6.9 95 137-233 6-113 (116)
55 2grc_A Probable global transcr 98.6 2.8E-08 9.5E-13 89.1 5.4 97 135-233 10-120 (129)
56 3nxb_A CAT eye syndrome critic 98.6 2.7E-08 9.2E-13 87.4 5.2 93 135-230 15-115 (116)
57 2ro1_A Transcription intermedi 98.6 5.4E-08 1.8E-12 92.8 7.5 96 138-234 78-179 (189)
58 1weu_A Inhibitor of growth fam 98.6 5.8E-08 2E-12 81.6 6.6 50 267-320 34-86 (91)
59 2vnf_A ING 4, P29ING4, inhibit 98.6 7.6E-09 2.6E-13 80.5 1.2 45 270-318 11-58 (60)
60 3d7c_A General control of amin 98.6 4.1E-08 1.4E-12 85.7 5.7 91 137-230 8-106 (112)
61 2i7k_A Bromodomain-containing 98.6 3.5E-08 1.2E-12 87.0 5.0 92 139-233 11-110 (117)
62 2dat_A Possible global transcr 98.6 4.6E-08 1.6E-12 86.9 5.8 94 135-230 12-118 (123)
63 3c6w_A P28ING5, inhibitor of g 98.6 9.8E-09 3.3E-13 79.6 1.3 44 271-318 11-57 (59)
64 3uv4_A Second bromodomain of h 98.6 3.8E-08 1.3E-12 91.2 5.2 96 135-232 24-131 (158)
65 1e6i_A Transcriptional activat 98.6 6.1E-08 2.1E-12 85.9 6.2 93 135-230 12-112 (121)
66 2jmi_A Protein YNG1, ING1 homo 98.6 1.9E-08 6.6E-13 84.4 2.6 46 269-318 26-75 (90)
67 3p1f_A CREB-binding protein; s 98.5 6.3E-08 2.1E-12 85.4 5.7 94 137-232 12-115 (119)
68 2yyn_A Transcription intermedi 98.5 9.3E-08 3.2E-12 86.3 6.9 98 135-234 19-124 (135)
69 2g6q_A Inhibitor of growth pro 98.5 2.2E-08 7.6E-13 78.4 1.4 46 270-319 12-60 (62)
70 3ljw_A Protein polybromo-1; al 98.5 5.6E-08 1.9E-12 85.9 3.9 93 136-230 8-113 (120)
71 4alg_A Bromodomain-containing 98.5 1E-07 3.4E-12 88.0 5.6 91 140-232 35-135 (154)
72 3fkm_X Signaling protein; brom 98.5 1.4E-07 4.8E-12 88.1 6.6 95 135-232 20-124 (166)
73 3o36_A Transcription intermedi 98.5 1.9E-07 6.4E-12 88.5 7.6 93 137-231 82-182 (184)
74 3q2e_A Bromodomain and WD repe 98.5 1.2E-07 4.2E-12 84.1 5.9 97 135-234 9-114 (123)
75 2lbm_A Transcriptional regulat 98.5 2.2E-08 7.5E-13 90.9 1.0 50 268-320 62-118 (142)
76 3mb3_A PH-interacting protein; 98.5 1.6E-07 5.6E-12 84.6 6.5 96 135-233 20-124 (135)
77 2oss_A HUNK1 protein, bromodom 98.5 1.1E-07 3.7E-12 85.0 5.1 83 145-229 29-121 (127)
78 2d9e_A Peregrin; four-helix bu 98.5 9E-08 3.1E-12 84.8 4.6 90 138-230 9-106 (121)
79 3mb4_A Protein polybromo-1; PB 98.4 1.5E-07 5.1E-12 83.6 5.5 94 136-231 15-121 (124)
80 3rcw_A Bromodomain-containing 98.4 1.8E-07 6E-12 84.4 5.1 94 135-231 12-113 (135)
81 2ri7_A Nucleosome-remodeling f 98.4 1.4E-07 4.7E-12 88.4 4.5 90 137-229 73-170 (174)
82 3tlp_A Protein polybromo-1; PB 98.4 2.3E-07 7.8E-12 85.1 5.7 96 138-235 26-135 (150)
83 3hme_A Bromodomain-containing 98.4 1.9E-07 6.7E-12 82.8 4.4 91 137-229 14-111 (123)
84 3mqm_A Probable histone-lysine 98.4 2.5E-07 8.7E-12 82.3 5.2 94 137-232 10-116 (126)
85 2dkw_A Hypothetical protein KI 98.4 6.5E-07 2.2E-11 80.4 7.7 93 139-234 15-114 (131)
86 3k2j_A Protein polybromo-1; PB 98.3 8.8E-07 3E-11 79.4 6.0 68 164-233 55-125 (130)
87 4gne_A Histone-lysine N-methyl 98.3 3.1E-07 1E-11 79.6 2.7 43 439-486 17-61 (107)
88 3dai_A ATPase family AAA domai 98.2 1.8E-06 6.2E-11 77.3 6.9 90 140-232 14-115 (130)
89 1wen_A Inhibitor of growth fam 98.2 5.3E-07 1.8E-11 72.4 3.0 43 442-487 20-65 (71)
90 2vnf_A ING 4, P29ING4, inhibit 98.2 3.2E-07 1.1E-11 71.3 0.6 42 442-486 14-58 (60)
91 3o70_A PHD finger protein 13; 98.1 8.8E-07 3E-11 70.5 2.8 49 268-318 18-66 (68)
92 1weu_A Inhibitor of growth fam 98.1 1.1E-06 3.6E-11 74.0 3.3 43 442-487 40-85 (91)
93 3ql9_A Transcriptional regulat 98.1 1.9E-07 6.4E-12 83.4 -1.4 51 267-320 55-112 (129)
94 3c6w_A P28ING5, inhibitor of g 98.1 4.9E-07 1.7E-11 70.0 0.6 42 442-486 13-57 (59)
95 1x4i_A Inhibitor of growth pro 98.1 7.9E-07 2.7E-11 71.2 1.3 45 271-319 8-55 (70)
96 2jmi_A Protein YNG1, ING1 homo 98.1 6.6E-07 2.3E-11 75.0 0.9 41 442-485 30-74 (90)
97 3uv5_A Transcription initiatio 98.0 4.6E-06 1.6E-10 83.4 6.0 92 137-231 15-114 (265)
98 2lbm_A Transcriptional regulat 98.0 1.4E-06 4.8E-11 79.0 1.3 46 439-487 65-117 (142)
99 2g6q_A Inhibitor of growth pro 98.0 1.2E-06 4.1E-11 68.5 0.4 42 442-486 15-59 (62)
100 3uv5_A Transcription initiatio 97.9 5.5E-06 1.9E-10 82.9 4.9 90 141-232 137-238 (265)
101 1we9_A PHD finger family prote 97.9 3.6E-06 1.2E-10 65.9 1.7 51 270-320 7-59 (64)
102 1wee_A PHD finger family prote 97.9 5.1E-06 1.7E-10 66.7 2.5 49 271-320 18-67 (72)
103 3o70_A PHD finger protein 13; 97.8 5E-06 1.7E-10 66.1 2.2 44 442-486 23-66 (68)
104 3aad_A Transcription initiatio 97.8 1.5E-05 5E-10 80.9 5.3 66 164-231 202-270 (292)
105 3aad_A Transcription initiatio 97.8 1E-05 3.4E-10 82.1 3.7 88 138-228 49-144 (292)
106 1wew_A DNA-binding family prot 97.8 8.7E-06 3E-10 66.4 2.2 48 270-320 17-73 (78)
107 2r0y_A Chromatin structure-rem 97.8 2.2E-05 7.4E-10 80.3 5.7 65 165-231 196-263 (311)
108 1wem_A Death associated transc 97.7 4.7E-06 1.6E-10 67.6 0.2 47 271-320 18-71 (76)
109 3o7a_A PHD finger protein 13 v 97.7 9.4E-06 3.2E-10 61.0 1.5 43 274-317 8-50 (52)
110 1we9_A PHD finger family prote 97.7 6.2E-06 2.1E-10 64.5 0.4 48 440-487 9-58 (64)
111 4bbq_A Lysine-specific demethy 97.7 1.5E-05 5E-10 69.8 2.6 39 449-487 72-114 (117)
112 3o7a_A PHD finger protein 13 v 97.7 9.2E-06 3.1E-10 61.1 1.0 42 443-485 9-50 (52)
113 2r10_A Chromatin structure-rem 97.7 3.7E-05 1.3E-09 80.2 5.7 65 165-231 246-313 (361)
114 1wee_A PHD finger family prote 97.6 1.3E-05 4.3E-10 64.4 1.5 45 442-486 20-65 (72)
115 1x4i_A Inhibitor of growth pro 97.6 8.7E-06 3E-10 65.1 0.5 42 443-487 11-55 (70)
116 2kgg_A Histone demethylase jar 97.6 7.8E-06 2.7E-10 61.5 0.1 48 438-485 3-52 (52)
117 2rsd_A E3 SUMO-protein ligase 97.6 1.7E-05 5.8E-10 63.0 1.9 46 271-319 12-65 (68)
118 2xb1_A Pygopus homolog 2, B-ce 97.6 1E-05 3.5E-10 69.8 0.5 48 271-320 5-62 (105)
119 2vpb_A Hpygo1, pygopus homolog 97.6 7.6E-06 2.6E-10 64.5 -0.4 45 271-317 10-64 (65)
120 3ql9_A Transcriptional regulat 97.6 5.8E-06 2E-10 73.7 -1.6 46 439-487 59-111 (129)
121 2kgg_A Histone demethylase jar 97.5 1.3E-05 4.5E-10 60.2 0.1 46 270-317 3-52 (52)
122 2xb1_A Pygopus homolog 2, B-ce 97.5 8.8E-06 3E-10 70.2 -1.5 49 439-487 5-61 (105)
123 1wep_A PHF8; structural genomi 97.5 2.6E-05 8.8E-10 63.7 1.0 49 271-320 14-64 (79)
124 2ri7_A Nucleosome-remodeling f 97.4 1.3E-05 4.4E-10 75.0 -1.3 49 270-319 9-59 (174)
125 2r10_A Chromatin structure-rem 97.4 0.00016 5.5E-09 75.3 6.0 92 136-230 78-178 (361)
126 3lqh_A Histone-lysine N-methyl 97.3 0.00043 1.5E-08 65.4 8.1 66 169-235 100-168 (183)
127 2vpb_A Hpygo1, pygopus homolog 97.3 1E-05 3.6E-10 63.7 -3.1 47 439-485 10-64 (65)
128 1wem_A Death associated transc 97.2 1.5E-05 5.3E-10 64.5 -3.0 45 442-486 20-69 (76)
129 1wew_A DNA-binding family prot 97.2 7E-05 2.4E-09 61.0 0.4 45 442-486 20-71 (78)
130 2r0y_A Chromatin structure-rem 97.1 0.00037 1.3E-08 71.2 5.5 91 135-230 27-128 (311)
131 1wep_A PHF8; structural genomi 97.1 6.3E-05 2.1E-09 61.4 -0.2 45 442-486 16-62 (79)
132 1wil_A KIAA1045 protein; ring 97.0 0.00018 6.2E-09 58.7 1.6 52 268-320 14-77 (89)
133 3kqi_A GRC5, PHD finger protei 97.0 0.00013 4.3E-09 59.0 0.4 46 274-319 14-61 (75)
134 2rsd_A E3 SUMO-protein ligase 97.0 0.00021 7.3E-09 56.6 1.5 45 442-486 14-64 (68)
135 3kqi_A GRC5, PHD finger protei 96.8 0.00014 4.7E-09 58.8 -0.8 45 442-486 14-60 (75)
136 3lqh_A Histone-lysine N-methyl 96.7 0.00044 1.5E-08 65.3 1.2 50 271-320 4-64 (183)
137 1wil_A KIAA1045 protein; ring 96.5 0.00048 1.6E-08 56.2 0.3 47 439-486 17-75 (89)
138 3iu6_A Protein polybromo-1; PB 96.3 0.0047 1.6E-07 56.1 5.6 62 171-233 47-111 (147)
139 3kv5_D JMJC domain-containing 96.2 0.00067 2.3E-08 73.3 -0.6 46 271-319 39-88 (488)
140 4bbq_A Lysine-specific demethy 95.3 0.0078 2.7E-07 52.2 2.7 40 281-320 72-115 (117)
141 3pur_A Lysine-specific demethy 95.0 0.0078 2.7E-07 65.0 2.1 38 280-319 54-94 (528)
142 3kv5_D JMJC domain-containing 94.7 0.0028 9.5E-08 68.5 -2.3 45 442-486 41-87 (488)
143 3kv4_A PHD finger protein 8; e 93.9 0.0051 1.7E-07 65.6 -2.3 46 272-319 7-56 (447)
144 3pur_A Lysine-specific demethy 93.4 0.024 8.3E-07 61.2 1.8 40 447-486 53-93 (528)
145 3kv4_A PHD finger protein 8; e 93.3 0.0054 1.9E-07 65.5 -3.5 45 442-486 9-55 (447)
146 2ku7_A MLL1 PHD3-CYP33 RRM chi 89.6 0.075 2.6E-06 46.3 0.4 35 451-485 1-42 (140)
147 2ku7_A MLL1 PHD3-CYP33 RRM chi 87.6 0.15 5.2E-06 44.3 1.1 38 283-320 1-45 (140)
148 3rsn_A SET1/ASH2 histone methy 87.1 0.39 1.3E-05 44.8 3.4 44 443-486 10-58 (177)
149 3rsn_A SET1/ASH2 histone methy 86.0 0.54 1.8E-05 43.8 3.8 47 274-320 9-60 (177)
150 3a1b_A DNA (cytosine-5)-methyl 80.0 0.43 1.5E-05 43.7 0.6 49 269-320 79-135 (159)
151 2kiz_A E3 ubiquitin-protein li 72.1 0.84 2.9E-05 34.8 0.2 48 269-320 14-61 (69)
152 4ap4_A E3 ubiquitin ligase RNF 71.3 0.11 3.7E-06 44.9 -5.8 33 452-488 91-123 (133)
153 1vyx_A ORF K3, K3RING; zinc-bi 69.8 0.53 1.8E-05 35.9 -1.4 48 269-318 6-55 (60)
154 1iym_A EL5; ring-H2 finger, ub 69.4 2.7 9.1E-05 30.3 2.5 45 270-318 6-51 (55)
155 1x4j_A Ring finger protein 38; 65.2 1.6 5.3E-05 34.0 0.4 47 269-319 23-69 (75)
156 2pv0_B DNA (cytosine-5)-methyl 65.0 1.1 3.8E-05 46.7 -0.6 49 269-320 93-149 (386)
157 2d8s_A Cellular modulator of i 61.2 1.7 5.7E-05 35.0 -0.1 48 270-319 16-67 (80)
158 1iym_A EL5; ring-H2 finger, ub 61.0 2.8 9.6E-05 30.2 1.2 44 440-487 8-52 (55)
159 2d8s_A Cellular modulator of i 60.2 3.7 0.00013 32.9 1.8 35 386-423 15-51 (80)
160 2lq6_A Bromodomain-containing 59.9 4.5 0.00015 33.1 2.3 40 380-423 11-50 (87)
161 2ecl_A Ring-box protein 2; RNF 57.6 3.9 0.00013 32.5 1.5 28 288-319 46-73 (81)
162 2ect_A Ring finger protein 126 56.8 5.4 0.00019 30.9 2.3 48 269-320 15-62 (78)
163 2k1p_A Zinc finger RAN-binding 56.3 9.8 0.00034 25.3 3.1 26 307-333 3-28 (33)
164 2l0b_A E3 ubiquitin-protein li 55.8 2.8 9.5E-05 34.1 0.4 48 268-319 39-86 (91)
165 2ecm_A Ring finger and CHY zin 55.1 2.7 9.3E-05 30.2 0.2 45 270-318 6-51 (55)
166 4b2u_A S67; toxin, ICK; NMR {S 52.3 4.2 0.00014 26.7 0.7 15 306-320 14-28 (36)
167 2ct0_A Non-SMC element 1 homol 49.5 6.9 0.00023 31.0 1.7 45 270-318 16-60 (74)
168 2ect_A Ring finger protein 126 48.2 4.6 0.00016 31.3 0.5 44 440-487 18-61 (78)
169 2kiz_A E3 ubiquitin-protein li 47.1 1.6 5.4E-05 33.3 -2.4 45 440-488 17-61 (69)
170 1x4j_A Ring finger protein 38; 45.9 1.4 4.7E-05 34.3 -2.9 45 439-487 25-69 (75)
171 1v87_A Deltex protein 2; ring- 45.9 4 0.00014 34.2 -0.2 33 287-319 58-91 (114)
172 2cup_A Skeletal muscle LIM-pro 45.9 13 0.00045 30.2 3.0 74 386-467 5-95 (101)
173 2ep4_A Ring finger protein 24; 44.1 3.4 0.00012 31.8 -0.9 47 270-320 16-62 (74)
174 1bor_A Transcription factor PM 42.8 25 0.00086 25.5 3.9 24 386-411 6-29 (56)
175 2ysj_A Tripartite motif-contai 42.7 5.5 0.00019 29.5 0.2 44 269-316 20-63 (63)
176 1v87_A Deltex protein 2; ring- 42.6 4.1 0.00014 34.1 -0.6 36 452-487 55-91 (114)
177 3k1l_B Fancl; UBC, ring, RWD, 42.4 7.5 0.00026 40.0 1.1 38 451-488 325-371 (381)
178 2lk0_A RNA-binding protein 5; 42.2 8.3 0.00028 25.5 1.0 25 308-333 3-27 (32)
179 2l0b_A E3 ubiquitin-protein li 41.6 2.5 8.6E-05 34.3 -2.1 45 439-487 42-86 (91)
180 2ysl_A Tripartite motif-contai 41.5 10 0.00036 28.7 1.6 47 269-319 20-66 (73)
181 2egp_A Tripartite motif-contai 41.1 24 0.00083 26.9 3.8 47 270-319 13-62 (79)
182 2ecl_A Ring-box protein 2; RNF 39.8 5.5 0.00019 31.6 -0.3 44 440-487 29-73 (81)
183 2pv0_B DNA (cytosine-5)-methyl 39.4 4.6 0.00016 42.0 -1.0 46 439-487 95-148 (386)
184 3a1b_A DNA (cytosine-5)-methyl 38.9 4.7 0.00016 36.8 -0.9 46 439-487 81-134 (159)
185 2ecj_A Tripartite motif-contai 38.7 15 0.0005 26.4 2.0 44 269-316 15-58 (58)
186 2ct0_A Non-SMC element 1 homol 37.2 7.4 0.00025 30.8 0.1 44 439-486 17-60 (74)
187 2ecy_A TNF receptor-associated 36.3 12 0.00043 27.8 1.3 44 270-319 16-59 (66)
188 2ecw_A Tripartite motif-contai 35.6 9.6 0.00033 29.6 0.5 48 269-319 19-68 (85)
189 2ecv_A Tripartite motif-contai 34.8 12 0.0004 29.1 0.9 48 269-319 19-68 (85)
190 1e4u_A Transcriptional repress 33.3 25 0.00086 27.7 2.7 27 385-411 10-38 (78)
191 2co8_A NEDD9 interacting prote 33.2 1.5E+02 0.0051 22.9 7.4 33 383-422 12-44 (82)
192 1weq_A PHD finger protein 7; s 32.5 26 0.0009 28.5 2.7 34 282-318 44-78 (85)
193 3k1l_B Fancl; UBC, ring, RWD, 32.0 15 0.00052 37.7 1.4 48 271-318 310-369 (381)
194 6rxn_A Rubredoxin; electron tr 31.8 22 0.00075 25.6 1.9 33 454-487 6-39 (46)
195 3dpl_R Ring-box protein 1; ubi 31.4 12 0.00043 31.4 0.6 28 288-319 71-98 (106)
196 4a0k_B E3 ubiquitin-protein li 30.8 11 0.00039 32.4 0.2 27 289-319 83-109 (117)
197 1bor_A Transcription factor PM 30.7 46 0.0016 24.0 3.6 41 270-320 7-47 (56)
198 1weq_A PHD finger protein 7; s 30.4 31 0.0011 28.1 2.8 34 450-486 44-78 (85)
199 2ebr_A Nuclear pore complex pr 30.2 38 0.0013 24.4 2.9 31 305-336 6-36 (47)
200 2lq6_A Bromodomain-containing 29.7 16 0.00055 29.8 0.9 28 271-299 19-48 (87)
201 2rgt_A Fusion of LIM/homeobox 29.6 29 0.00099 31.2 2.8 93 386-486 6-124 (169)
202 3l11_A E3 ubiquitin-protein li 28.9 25 0.00084 29.3 2.1 30 457-489 32-61 (115)
203 2egp_A Tripartite motif-contai 28.3 31 0.001 26.3 2.4 32 457-488 29-63 (79)
204 3nw0_A Non-structural maintena 28.1 19 0.00065 34.8 1.3 44 271-318 182-225 (238)
205 2d8t_A Dactylidin, ring finger 26.4 18 0.00061 27.4 0.6 43 270-319 16-58 (71)
206 2ebq_A Nuclear pore complex pr 26.0 40 0.0014 24.3 2.4 32 304-336 5-36 (47)
207 2jtn_A LIM domain-binding prot 26.0 29 0.001 31.5 2.2 75 385-467 59-148 (182)
208 2ehe_A Four and A half LIM dom 25.5 1.1E+02 0.0037 23.5 5.2 12 386-397 15-26 (82)
209 1n0z_A ZNF265; zinc finger, RN 24.9 61 0.0021 23.0 3.2 28 306-334 10-39 (45)
210 3l11_A E3 ubiquitin-protein li 24.1 33 0.0011 28.5 1.9 44 270-319 16-59 (115)
211 3nw0_A Non-structural maintena 23.6 19 0.00066 34.7 0.4 44 439-486 182-225 (238)
212 2ebv_A Nuclear pore complex pr 23.1 70 0.0024 24.0 3.3 30 304-334 25-54 (57)
213 2yur_A Retinoblastoma-binding 23.1 31 0.0011 26.3 1.5 32 384-423 13-45 (74)
214 1g47_A Pinch protein; LIM doma 22.6 61 0.0021 24.5 3.2 32 385-422 10-41 (77)
215 2ea6_A Ring finger protein 4; 22.5 18 0.0006 26.8 -0.1 45 270-318 16-64 (69)
216 3gj8_B Nuclear pore complex pr 22.5 35 0.0012 27.9 1.7 29 306-335 61-89 (92)
217 3gj5_B Nuclear pore complex pr 22.3 39 0.0013 22.7 1.6 28 307-335 4-31 (34)
218 3gj3_B Nuclear pore complex pr 21.9 44 0.0015 22.3 1.8 27 307-334 4-30 (33)
219 3ng2_A RNF4, snurf, ring finge 21.7 15 0.0005 27.6 -0.7 46 270-319 11-60 (71)
220 4rxn_A Rubredoxin; electron tr 20.8 40 0.0014 25.0 1.6 10 477-486 35-44 (54)
221 4a0k_B E3 ubiquitin-protein li 20.4 21 0.00073 30.6 0.0 31 453-487 79-109 (117)
222 2djb_A Polycomb group ring fin 20.4 39 0.0013 25.5 1.6 33 384-423 13-45 (72)
223 2odv_A Plectin 1, HD1; plakin 20.4 65 0.0022 30.9 3.4 36 174-209 73-108 (235)
224 1e8j_A Rubredoxin; iron-sulfur 20.1 91 0.0031 22.8 3.4 10 477-486 35-44 (52)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.71 E-value=6.8e-18 Score=147.99 Aligned_cols=98 Identities=33% Similarity=0.873 Sum_probs=86.0
Q ss_pred ccCccccccCcccccCCCcccccCCcccCCccccccccCcccccCCCCcccCccc-ccccccccCCCCCceeccCCCCcc
Q 009258 384 ESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPKQLKRYGPCWFCPSC-LCRACLTDKDDEKIVMCDGCDQGY 462 (539)
Q Consensus 384 ~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~~~~~~~~~~W~Cp~C-~C~~C~~~~~~~~ll~Cd~C~~~y 462 (539)
.+...|.+|+..+. ...++.|+. | .+.||..|+.+.........|+|+.| .|.+|++.+++..||.||.|+++|
T Consensus 5 ~~~~~C~~C~~~g~--~~~ll~C~~--C-~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~y 79 (111)
T 2ysm_A 5 SSGANCAVCDSPGD--LLDQFFCTT--C-GQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGY 79 (111)
T ss_dssp CCCSCBTTTCCCCC--TTTSEECSS--S-CCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEE
T ss_pred CCCCCCcCCCCCCC--CcCCeECCC--C-CCCcChHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHH
Confidence 45678999998754 356799985 8 68899999998766555678999999 799999998888999999999999
Q ss_pred cccCCCCCCCCCCCCCcccCCCcc
Q 009258 463 HLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 463 H~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
|++|++||+..+|.++|+|+.|..
T Consensus 80 H~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 80 HTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp EGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred hHHhcCCccccCCCCCcCCcCCcC
Confidence 999999999999999999999964
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.67 E-value=1.4e-17 Score=146.86 Aligned_cols=98 Identities=32% Similarity=0.833 Sum_probs=81.3
Q ss_pred ccccccCcccc-----cCCCcccccCCcccCCccccccccCcccc---cCCCCcccCccc-ccccccccCCCCCceeccC
Q 009258 387 NLCKICGRKVE-----ESSDKFRSCEHAFCYSKFYHERCLTPKQL---KRYGPCWFCPSC-LCRACLTDKDDEKIVMCDG 457 (539)
Q Consensus 387 ~~C~iCgs~~~-----~~~~~ll~C~~~~C~~k~yH~~Cl~~~~~---~~~~~~W~Cp~C-~C~~C~~~~~~~~ll~Cd~ 457 (539)
+.|.+|..... .+.+.|+.|+. | ...||..||..... ......|+|+.| .|.+|+...+++.||.||.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~--C-~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~ 78 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD--C-GRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDD 78 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS--S-CCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSS
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC--C-CCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCC
Confidence 46888866532 12579999996 9 68899999987531 122357999999 8999999888899999999
Q ss_pred CCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 458 CDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 458 C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
|+++||++|++|||..+|.++|+|+.|...
T Consensus 79 C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 79 CDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp SCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCccccccccCCCccCCCCCCeECccccch
Confidence 999999999999999999999999999753
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.65 E-value=5.4e-17 Score=142.59 Aligned_cols=99 Identities=32% Similarity=0.886 Sum_probs=81.4
Q ss_pred cCccccccCccccc----CCCcccccCCcccCCccccccccCccc--c-cCCCCcccCccc-cccccccc-CCCCCceec
Q 009258 385 SANLCKICGRKVEE----SSDKFRSCEHAFCYSKFYHERCLTPKQ--L-KRYGPCWFCPSC-LCRACLTD-KDDEKIVMC 455 (539)
Q Consensus 385 ~~~~C~iCgs~~~~----~~~~ll~C~~~~C~~k~yH~~Cl~~~~--~-~~~~~~W~Cp~C-~C~~C~~~-~~~~~ll~C 455 (539)
..+.|.+|...... ..++|+.|+. | +..||..||.... . ......|+|+.| .|.+|+.. .+++.+|.|
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~--C-~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~C 80 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCAD--C-GNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFC 80 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTT--T-CCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEEC
T ss_pred cCccccccCCchhhCcCCCchhceEhhh--c-CCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEc
Confidence 35789999776422 2568999996 8 7889999997531 1 123468999999 89999975 356789999
Q ss_pred cCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 456 DGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 456 d~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
|.|+++||++|++|||.++|+++|+|+.|+.
T Consensus 81 d~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 81 DSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 9999999999999999999999999999974
No 4
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=127.67 Aligned_cols=101 Identities=28% Similarity=0.723 Sum_probs=78.8
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccCCCCCCcccccccccCCCCccccccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKGFGSPHENCIVCERMNANAPRIQINQAG 347 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~~~~~R~~~~~~~ 347 (539)
+++.|.+|+..++.++||.|++|++.||++|+++++..+|.+.|+|++|. .
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~---------~-------------------- 56 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK---------V-------------------- 56 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC---------C--------------------
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC---------c--------------------
Confidence 45589999986666677999999999999999999988889999999995 2
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCCCCccccCccccccCcccccCCCcccccCCcccCCccccccccCccccc
Q 009258 348 DEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPKQLK 427 (539)
Q Consensus 348 ~~~~~~~~e~~~e~e~~s~~~~e~~~~~~~~gv~~~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~~~~~ 427 (539)
|.+|+.... ..+++.|+. | .+.||..|+.+....
T Consensus 57 -----------------------------------------C~~C~~~~~--~~~ll~Cd~--C-~~~yH~~Cl~ppl~~ 90 (111)
T 2ysm_A 57 -----------------------------------------CQNCKQSGE--DSKMLVCDT--C-DKGYHTFCLQPVMKS 90 (111)
T ss_dssp -----------------------------------------CTTTCCCSC--CTTEEECSS--S-CCEEEGGGSSSCCSS
T ss_pred -----------------------------------------ccccCccCC--CCCeeECCC--C-CcHHhHHhcCCcccc
Confidence 334444322 356888986 8 788999999976554
Q ss_pred CCCCcccCccc-ccccc
Q 009258 428 RYGPCWFCPSC-LCRAC 443 (539)
Q Consensus 428 ~~~~~W~Cp~C-~C~~C 443 (539)
.....|+|+.| .|..+
T Consensus 91 ~P~g~W~C~~C~~c~~g 107 (111)
T 2ysm_A 91 VPTNGWKCKNCRICISG 107 (111)
T ss_dssp CCSSCCCCHHHHCCSCS
T ss_pred CCCCCcCCcCCcCcCCC
Confidence 45568999988 55544
No 5
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.1e-14 Score=115.33 Aligned_cols=56 Identities=38% Similarity=1.083 Sum_probs=53.2
Q ss_pred CcccCcccccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCC-CcccCCCcc
Q 009258 431 PCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKG-NWFCRKCDA 486 (539)
Q Consensus 431 ~~W~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~-~W~C~~C~~ 486 (539)
..|+|+.|.|.+|++..+++.||.||.|+++||++||+|||..+|.+ +|+|+.|..
T Consensus 20 ~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 57999999999999988899999999999999999999999999999 999999964
No 6
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.47 E-value=2.1e-14 Score=115.57 Aligned_cols=56 Identities=41% Similarity=1.133 Sum_probs=53.5
Q ss_pred CcccCcccccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCC-CcccCCCcc
Q 009258 431 PCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKG-NWFCRKCDA 486 (539)
Q Consensus 431 ~~W~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~-~W~C~~C~~ 486 (539)
..|+|+.|.|.+|++..+++.||.||.|+++||++||+|||..+|.+ +|+|+.|..
T Consensus 12 ~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 58999999999999988899999999999999999999999999999 999999975
No 7
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.45 E-value=4e-14 Score=115.85 Aligned_cols=56 Identities=41% Similarity=1.141 Sum_probs=53.2
Q ss_pred CcccCcccccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCC-cccCCCcc
Q 009258 431 PCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGN-WFCRKCDA 486 (539)
Q Consensus 431 ~~W~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~-W~C~~C~~ 486 (539)
+.|+|+.|.|.+|++..+++.||.||.|+++||++|++|||..+|.++ |+|+.|+.
T Consensus 20 ~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 20 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 579999999999999999999999999999999999999999999999 99999974
No 8
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.33 E-value=5e-13 Score=100.77 Aligned_cols=48 Identities=31% Similarity=1.012 Sum_probs=45.2
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
.|.+|+..++++.||.||+|+++||++|++|+++.+|+|+|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 699999987788999999999999999999999999999999999974
No 9
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=103.67 Aligned_cols=48 Identities=27% Similarity=0.627 Sum_probs=43.9
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
..|.+|++ +++||+||+|+++||++|++|++..+|.|+|||+.|....
T Consensus 13 ~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 13 ARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 46999986 6789999999999999999999999999999999998544
No 10
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.29 E-value=3.2e-12 Score=106.75 Aligned_cols=50 Identities=34% Similarity=0.897 Sum_probs=45.3
Q ss_pred CCcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 267 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 267 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
.+++.|.+|+. +++||+||+|+++||++|+.||++.+|+|+|+|+.|...
T Consensus 23 ~n~~~C~vC~~---~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCC---CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34568999997 678999999999999999999999999999999999843
No 11
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.29 E-value=2e-12 Score=101.23 Aligned_cols=50 Identities=36% Similarity=1.045 Sum_probs=45.0
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
++..|.+|+. +++||+||+|+++||++|+.|+++.+|.|+|+|+.|..+.
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3457999986 6789999999999999999999999999999999998543
No 12
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.28 E-value=2.6e-12 Score=111.41 Aligned_cols=45 Identities=29% Similarity=0.767 Sum_probs=39.4
Q ss_pred CcccccccccccCCCCceeeC--cCCCcCcccccCCCCCCCCCCCcccCCcc
Q 009258 268 KVHTCRQCEEKAGEKDGLVCD--SCEEMYHLSCIEPAFKDIPPKSWYCARCT 317 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 317 (539)
+++.|.+|+. +|+||+|| +|+++||++|+ .|..+|+|+|+||.|.
T Consensus 14 ~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl--~L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCGD---GGELVMCDKKDCPKAYHLLCL--NLTQPPYGKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTCC---CSEEEECCSTTCCCEECTGGG--TCSSCCSSCCCCGGGB
T ss_pred CCCCCCcCCC---CCcEeEECCCCCCcccccccC--cCCcCCCCCEECCCCC
Confidence 3447999995 78999999 89999999999 5899999999999774
No 13
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=2.3e-12 Score=100.87 Aligned_cols=50 Identities=28% Similarity=0.961 Sum_probs=45.2
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
++..|.+|+. +++||+||+|+++||++|++|+++.+|+|+|+|+.|...+
T Consensus 10 ~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 10 HQDYCEVCQQ---GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59 (61)
T ss_dssp CCSSCTTTSC---CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred CCCCCccCCC---CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence 3458999997 6799999999999999999999999999999999998654
No 14
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.24 E-value=2.7e-12 Score=112.52 Aligned_cols=96 Identities=22% Similarity=0.646 Sum_probs=72.2
Q ss_pred ccccccccc------cCCCCceeeCcCCCcCcccccCCC--C-CCCCCCCcccCCccccCCCCCCcccccccccCCCCcc
Q 009258 270 HTCRQCEEK------AGEKDGLVCDSCEEMYHLSCIEPA--F-KDIPPKSWYCARCTAKGFGSPHENCIVCERMNANAPR 340 (539)
Q Consensus 270 ~~C~~C~~~------~~~~~ll~Cd~C~~~~H~~Cl~P~--l-~~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~~~~~R 340 (539)
.+|.+|.+. +.+++||.|++|++.||.+|++.. + ..++.+.|+|++|+ .
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---------~------------- 63 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK---------T------------- 63 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC---------C-------------
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC---------c-------------
Confidence 479999764 346789999999999999999642 2 35788999999996 2
Q ss_pred ccccccCCCCCCCCCCCCccccccccccccCCCCCCCCCCCccccCccccccCcccccCCCcccccCCcccCCccccccc
Q 009258 341 IQINQAGDEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERC 420 (539)
Q Consensus 341 ~~~~~~~~~~~~~~~e~~~e~e~~s~~~~e~~~~~~~~gv~~~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~C 420 (539)
|.+|+..+.+ .+.++.|+. | ...||..|
T Consensus 64 ------------------------------------------------C~vC~~~~~~-~~~ll~Cd~--C-~~~yH~~C 91 (112)
T 3v43_A 64 ------------------------------------------------CSSCRDQGKN-ADNMLFCDS--C-DRGFHMEC 91 (112)
T ss_dssp ------------------------------------------------BTTTCCCCCT-TCCCEECTT--T-CCEECGGG
T ss_pred ------------------------------------------------cccccCcCCC-ccceEEcCC--C-CCeeeccc
Confidence 3344433222 457888986 8 58899999
Q ss_pred cCcccccCCCCcccCcccc
Q 009258 421 LTPKQLKRYGPCWFCPSCL 439 (539)
Q Consensus 421 l~~~~~~~~~~~W~Cp~C~ 439 (539)
+.+.........|+|+.|.
T Consensus 92 l~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 92 CDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp CSSCCSSCCSSCCCCTTTS
T ss_pred CCCCCCCCCCCCeECCCCC
Confidence 9886655555689999984
No 15
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.24 E-value=2e-12 Score=113.80 Aligned_cols=94 Identities=26% Similarity=0.728 Sum_probs=71.0
Q ss_pred cccccccc-------cCCCCceeeCcCCCcCcccccCCCCC---CCCCCCcccCCccccCCCCCCcccccccccCCCCcc
Q 009258 271 TCRQCEEK-------AGEKDGLVCDSCEEMYHLSCIEPAFK---DIPPKSWYCARCTAKGFGSPHENCIVCERMNANAPR 340 (539)
Q Consensus 271 ~C~~C~~~-------~~~~~ll~Cd~C~~~~H~~Cl~P~l~---~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~~~~~R 340 (539)
.|.+|... +++++||.|++|+++||.+|++++.. .+|++.|+|++|. .|.+
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---------~C~~---------- 63 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK---------SCIL---------- 63 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC---------CCTT----------
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC---------ccCc----------
Confidence 68888653 24579999999999999999987642 5788999999995 2333
Q ss_pred ccccccCCCCCCCCCCCCccccccccccccCCCCCCCCCCCccccCccccccCcccccCCCcccccCCcccCCccccccc
Q 009258 341 IQINQAGDEICPANGETSTEFEENSNCTTANVDKPTDNGVDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERC 420 (539)
Q Consensus 341 ~~~~~~~~~~~~~~~e~~~e~e~~s~~~~e~~~~~~~~gv~~~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~C 420 (539)
|+.... ++.++.|+. | ...||..|
T Consensus 64 ---------------------------------------------------C~~~~~--~~~ll~Cd~--C-~~~yH~~C 87 (114)
T 2kwj_A 64 ---------------------------------------------------CGTSEN--DDQLLFCDD--C-DRGYHMYC 87 (114)
T ss_dssp ---------------------------------------------------TTCCTT--TTTEEECSS--S-CCEEETTT
T ss_pred ---------------------------------------------------ccccCC--CCceEEcCC--C-Cccccccc
Confidence 333221 467889995 8 58899999
Q ss_pred cCcccccCCCCcccCcccc
Q 009258 421 LTPKQLKRYGPCWFCPSCL 439 (539)
Q Consensus 421 l~~~~~~~~~~~W~Cp~C~ 439 (539)
+.+.........|+|+.|.
T Consensus 88 l~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 88 LNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp SSSCCSSCCSSCCCCHHHH
T ss_pred cCCCccCCCCCCeECcccc
Confidence 9976555555689999883
No 16
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.24 E-value=3.6e-12 Score=102.50 Aligned_cols=53 Identities=28% Similarity=1.005 Sum_probs=48.0
Q ss_pred CCCcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCC-CcccCCccc
Q 009258 266 VYKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPK-SWYCARCTA 318 (539)
Q Consensus 266 ~~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g-~W~C~~C~~ 318 (539)
...++.|.+|++..+++.||+||+|+++||++|++|||+.+|+| +|+|+.|..
T Consensus 15 ~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 15 LCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp CCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred ECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 33466889999888889999999999999999999999999999 999999974
No 17
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=5.1e-12 Score=103.41 Aligned_cols=52 Identities=33% Similarity=0.960 Sum_probs=47.8
Q ss_pred CCcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCC-CcccCCccc
Q 009258 267 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPK-SWYCARCTA 318 (539)
Q Consensus 267 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g-~W~C~~C~~ 318 (539)
..++.|.+|+...+++.||+||+|+++||++|++|||+.+|+| +|+|+.|..
T Consensus 24 C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 24 CHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3466899999988899999999999999999999999999999 999999973
No 18
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.23 E-value=2.7e-12 Score=102.09 Aligned_cols=50 Identities=28% Similarity=0.942 Sum_probs=45.3
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
+++.|.+|+. +++||+||+|+++||++|+.||++.+|.|+|+|+.|..+.
T Consensus 7 ~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRD---GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSC---CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCC---CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 3458999997 6789999999999999999999999999999999998654
No 19
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.22 E-value=2.8e-12 Score=96.64 Aligned_cols=48 Identities=35% Similarity=1.149 Sum_probs=44.7
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|++.++++.||.||.|+++||++|++||+.++|.++|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 478898888888999999999999999999999999999999999974
No 20
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.5e-12 Score=98.07 Aligned_cols=48 Identities=38% Similarity=1.044 Sum_probs=43.6
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
+++.|.+|+. ++.||.||+|+++||++|+.|+++.+|+|+|+|+.|..
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCC---CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3457999997 57899999999999999999999999999999999963
No 21
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.22 E-value=4.5e-12 Score=123.22 Aligned_cols=56 Identities=41% Similarity=1.133 Sum_probs=48.9
Q ss_pred CcccCcccccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCC-CcccCCCcc
Q 009258 431 PCWFCPSCLCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKG-NWFCRKCDA 486 (539)
Q Consensus 431 ~~W~Cp~C~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~-~W~C~~C~~ 486 (539)
..|.|+.|.|.+|+...+++.||.||.|+++||++|++|||..+|.+ +|+|+.|..
T Consensus 168 ~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 168 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred cCEecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57999999999999988899999999999999999999999999999 999999974
No 22
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.19 E-value=5e-12 Score=98.55 Aligned_cols=49 Identities=37% Similarity=1.033 Sum_probs=44.4
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
+++.|.+|+. ++.||.||+|+++||++|++||++.+|.|+|+|+.|...
T Consensus 4 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCC---CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 3458999997 679999999999999999999999999999999999743
No 23
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=5.3e-12 Score=106.88 Aligned_cols=56 Identities=36% Similarity=1.016 Sum_probs=51.6
Q ss_pred CcccCccc-ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 431 PCWFCPSC-LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 431 ~~W~Cp~C-~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
..|.|..+ .|.+|+..++.+.||.||.|+++||++|++|||..+|.++|+|+.|..
T Consensus 9 s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 9 SSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred chhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 56888888 799999888788999999999999999999999999999999999964
No 24
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=5.1e-12 Score=106.97 Aligned_cols=52 Identities=29% Similarity=0.859 Sum_probs=47.0
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
++..|.+|+...+.+.||+||+|+++||++|++||+..+|.|+|||+.|...
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3447999999777778999999999999999999999999999999999754
No 25
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=101.12 Aligned_cols=55 Identities=27% Similarity=0.957 Sum_probs=49.0
Q ss_pred cCCCCcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCC-cccCCccc
Q 009258 264 CDVYKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKS-WYCARCTA 318 (539)
Q Consensus 264 ~~~~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~-W~C~~C~~ 318 (539)
.+....+.|.+|++..+++.||+||+|+++||++|++|||..+|+|+ |+|+.|++
T Consensus 21 ~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 21 NRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 34455778999999888889999999999999999999999999999 99999974
No 26
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.10 E-value=1.2e-11 Score=98.15 Aligned_cols=53 Identities=26% Similarity=0.771 Sum_probs=45.6
Q ss_pred Ccccccccccc--cCCCCceeeCcCCCcCcccccCCCCCC--C-CCCCcccCCccccC
Q 009258 268 KVHTCRQCEEK--AGEKDGLVCDSCEEMYHLSCIEPAFKD--I-PPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~--~~~~~ll~Cd~C~~~~H~~Cl~P~l~~--~-P~g~W~C~~C~~~~ 320 (539)
++..|.+|+.. .+.+.||+||+|+++||++|+.|+++. + |+|.|+|+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45589999985 345899999999999999999999976 4 89999999998554
No 27
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.09 E-value=2.9e-11 Score=96.05 Aligned_cols=45 Identities=31% Similarity=0.741 Sum_probs=40.8
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|+ +++.||.||.|+++||++|++|||..+|.++|+|+.|..
T Consensus 14 ~C~vC~---~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 14 RCGVCG---DGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTTS---CCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CcCCCC---CCCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 578885 456799999999999999999999999999999999974
No 28
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.07 E-value=8.1e-11 Score=92.03 Aligned_cols=46 Identities=35% Similarity=1.169 Sum_probs=40.8
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
.|.+|+. ++.||.||.|+++||++|+.||+.++|.++|+|+.|..+
T Consensus 11 ~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 11 FCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4677753 568999999999999999999999999999999999753
No 29
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.06 E-value=2.4e-11 Score=102.01 Aligned_cols=52 Identities=33% Similarity=0.800 Sum_probs=45.0
Q ss_pred cccccccccccC--CCCceeeCcCCCcCcccccCCCCCC----CCCCCcccCCccccC
Q 009258 269 VHTCRQCEEKAG--EKDGLVCDSCEEMYHLSCIEPAFKD----IPPKSWYCARCTAKG 320 (539)
Q Consensus 269 ~~~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~P~l~~----~P~g~W~C~~C~~~~ 320 (539)
+.+|.+|++... .+.||+||+|+++||++|+.|++.. +|.|.|||+.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 448999998543 4789999999999999999999984 999999999997543
No 30
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.05 E-value=1.4e-10 Score=96.86 Aligned_cols=45 Identities=36% Similarity=0.949 Sum_probs=40.9
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|+. ++.+|.||.|+++||++|+.||+.++|.++|+|+.|..
T Consensus 27 ~C~vC~~---~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 27 ICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp CCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred cCcCcCC---CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 6888864 45799999999999999999999999999999999974
No 31
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.04 E-value=4e-11 Score=96.57 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=43.0
Q ss_pred Cccccccccccc--CCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 268 KVHTCRQCEEKA--GEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 268 ~~~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
++..|.+|++.+ +++.||+||+|+++||++|++|+ .+|+|+|||+.|..+
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCc
Confidence 345899998754 67799999999999999999877 499999999999754
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.02 E-value=1.3e-10 Score=112.47 Aligned_cols=51 Identities=29% Similarity=0.821 Sum_probs=46.1
Q ss_pred CCcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 267 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 267 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
.+++.|.+|+. +|++|+||+|+++||+.|+.|++..+|.|+|+|+.|...+
T Consensus 5 ~~~~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQN---GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCC---CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34568999997 6789999999999999999999999999999999998665
No 33
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.02 E-value=2.4e-10 Score=108.48 Aligned_cols=50 Identities=28% Similarity=0.832 Sum_probs=45.5
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
+++.|.+|+. +|++|+||+|+++||++|+.|++..+|.|+|+|+.|....
T Consensus 3 ~~~~C~~C~~---~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQN---GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCC---CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCC---CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3458999996 7889999999999999999999999999999999998654
No 34
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.01 E-value=4.9e-11 Score=92.91 Aligned_cols=45 Identities=42% Similarity=1.226 Sum_probs=40.3
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|+. ++.||.||.|+++||++|++||+..+|.++|+|+.|..
T Consensus 7 ~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 7 FCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp SCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCcCCCC---CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4777754 46899999999999999999999999999999999964
No 35
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=113.32 Aligned_cols=51 Identities=29% Similarity=1.036 Sum_probs=43.4
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCC-CcccCCccc
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPK-SWYCARCTA 318 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g-~W~C~~C~~ 318 (539)
.++.|.+|+...+++.||+||+|+++||++|++|||+.+|.| +|+|+.|..
T Consensus 173 ~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 173 RVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 466899999988889999999999999999999999999999 999999974
No 36
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.2e-10 Score=89.44 Aligned_cols=44 Identities=43% Similarity=1.256 Sum_probs=39.1
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCD 485 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~ 485 (539)
.|.+|+. .+.||.||.|+++||++|++||+..+|.++|+|+.|.
T Consensus 11 ~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 11 FCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCccCCC---CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4666754 3689999999999999999999999999999999995
No 37
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.97 E-value=1.4e-10 Score=92.15 Aligned_cols=45 Identities=36% Similarity=1.087 Sum_probs=39.7
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|+. ++.||.||.|+++||++|+.||+..+|.++|+|+.|..
T Consensus 10 ~C~vC~~---~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 10 ECAVCRD---GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SBSSSSC---CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCccCCC---CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4666753 46899999999999999999999999999999999964
No 38
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.97 E-value=1.4e-10 Score=90.61 Aligned_cols=45 Identities=36% Similarity=1.129 Sum_probs=40.1
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|+. ++.||.||.|+++||++|++||+..+|.++|+|+.|..
T Consensus 13 ~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 13 YCEVCQQ---GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCTTTSC---CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCccCCC---CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4667754 46899999999999999999999999999999999974
No 39
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.95 E-value=1e-10 Score=98.15 Aligned_cols=51 Identities=25% Similarity=0.666 Sum_probs=43.4
Q ss_pred Cccccccccccc--CCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKA--GEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
++..|.+|+..+ +++.||+||+|+.+||++|+.|++ +|+|+|||+.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 445899999853 556899999999999999998874 899999999998544
No 40
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.94 E-value=1.5e-10 Score=97.17 Aligned_cols=48 Identities=29% Similarity=0.774 Sum_probs=42.2
Q ss_pred ccccccccCC--CCCceeccCCCCcccccCCCCCCCC----CCCCCcccCCCcc
Q 009258 439 LCRACLTDKD--DEKIVMCDGCDQGYHLYCMDPPRTS----VPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~--~~~ll~Cd~C~~~yH~~Cl~Ppl~~----~P~~~W~C~~C~~ 486 (539)
.|.+|+.... ++.||+||.|+++||++|+.|||.. +|.+.|+|+.|..
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 5888887654 4789999999999999999999985 8999999999974
No 41
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.92 E-value=3e-10 Score=92.33 Aligned_cols=53 Identities=23% Similarity=0.710 Sum_probs=46.8
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
+...|.+|+...+++.||.||+|+.+||+.|+++++...|.++|+|+.|..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 44579999998877789999999999999999999888888999999998543
No 42
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.92 E-value=4.9e-10 Score=106.94 Aligned_cols=47 Identities=36% Similarity=0.972 Sum_probs=43.7
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
+.|.+|+. +|++|+||+|+++||++|+.|+++.+|.|+|+|+.|...
T Consensus 3 ~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCC---CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCC---CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 47999997 678999999999999999999999999999999999854
No 43
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.86 E-value=3.3e-10 Score=89.72 Aligned_cols=48 Identities=35% Similarity=1.002 Sum_probs=41.4
Q ss_pred cccccccc--CCCCCceeccCCCCcccccCCCCCCCC--C-CCCCcccCCCcc
Q 009258 439 LCRACLTD--KDDEKIVMCDGCDQGYHLYCMDPPRTS--V-PKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~--~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~--~-P~~~W~C~~C~~ 486 (539)
.|.+|+.. .+++.||+||.|+.+||++|+.||+.. + |.+.|+|+.|..
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 57888765 345899999999999999999999877 4 899999999974
No 44
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.83 E-value=4.1e-10 Score=90.63 Aligned_cols=47 Identities=32% Similarity=0.980 Sum_probs=41.0
Q ss_pred ccccccccC--CCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 439 LCRACLTDK--DDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~--~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
.|.+|+..+ +++.||.||.|+.+||++|++|| .+|.++|+|+.|..+
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 66 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCc
Confidence 578887664 67899999999999999999997 489999999999753
No 45
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.78 E-value=8.3e-10 Score=89.68 Aligned_cols=49 Identities=31% Similarity=0.800 Sum_probs=42.9
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
.|.+|++..+++.||.||.|+.+||+.|+++++...|.++|+|+.|..+
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 4667777777778999999999999999999988888899999999754
No 46
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.72 E-value=6.2e-09 Score=88.99 Aligned_cols=45 Identities=29% Similarity=0.763 Sum_probs=38.5
Q ss_pred cccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 442 ACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
+|+...+++.||.||.|+.+||+.|+.|++..+|. .|+|+.|...
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~ 76 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPR 76 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSS
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCC
Confidence 45555677899999999999999999999888874 7999999754
No 47
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.70 E-value=1.7e-09 Score=90.71 Aligned_cols=46 Identities=33% Similarity=0.999 Sum_probs=39.9
Q ss_pred ccccccccC--CCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDK--DDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~--~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|+..+ +++.||.||.|+.+||++|+.||+ +|.++|+|+.|..
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 477787654 567999999999999999999984 8999999999964
No 48
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=98.69 E-value=1.4e-08 Score=91.12 Aligned_cols=92 Identities=17% Similarity=0.402 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHHHhcch--hHHHHHHH-------hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHH
Q 009258 137 NTDMCQRAFLEIITSEK--FTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQ 207 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~--~~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~ 207 (539)
....|..+|..++..+. ++.++... ..+|..+ |.+||||+||..||.+|.| .+++.|.+||++||.|+.
T Consensus 23 ~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~ef~~Dv~li~~Na~ 100 (130)
T 2ouo_A 23 QLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLEAREY-RDAQEFGADVRLMFSNCY 100 (130)
T ss_dssp HHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHH-cCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHH
Confidence 45679988888876543 34444432 2345566 9999999999999999998 779999999999999998
Q ss_pred HH---hHHHHHHHHHhhhhhHhhHHh
Q 009258 208 EI---GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 208 ~~---g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
.+ +..+...|..|...+...+.+
T Consensus 101 ~yN~~~s~i~~~A~~L~~~f~~~~~~ 126 (130)
T 2ouo_A 101 KYNPPDHEVVAMARKLQDVFEMRFAK 126 (130)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 87 678999999999988776654
No 49
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.69 E-value=1.3e-08 Score=81.85 Aligned_cols=49 Identities=27% Similarity=0.886 Sum_probs=40.8
Q ss_pred CcccccccccccCCCCceeeCc--CC-CcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
+...| +|++..+ +.||.||. |+ .+||+.|+ +|+..|.+.|||+.|....
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cv--gl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTT--TCSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccC--CcCcCCCCCEECCCCCccc
Confidence 34478 7988654 68999999 77 79999999 6889999999999998544
No 50
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=87.49 Aligned_cols=48 Identities=25% Similarity=0.715 Sum_probs=42.2
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
.| +|+...+++.||.||.|+.+||+.|+.|++..+|+ .|+|+.|....
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~~ 77 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPRN 77 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSSC
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCCC
Confidence 56 78887778899999999999999999999888885 79999998544
No 51
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.67 E-value=7.3e-09 Score=100.09 Aligned_cols=45 Identities=31% Similarity=0.930 Sum_probs=40.0
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|+ +++.+|.||.|+++||+.|+.||+..+|.|+|+|+.|..
T Consensus 9 ~C~~C~---~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 9 WCAVCQ---NGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp SBTTTC---CCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCC---CCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence 467775 445799999999999999999999999999999999975
No 52
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=98.66 E-value=1.9e-08 Score=88.88 Aligned_cols=95 Identities=18% Similarity=0.401 Sum_probs=74.4
Q ss_pred CCcHHHHHHHHHHHHhcch--hHHHHH----HH---hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEK--FTLLCK----VL---LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKK 205 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~--~~~~~~----~l---~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwkn 205 (539)
......|..+|..++..+. ++.++. .- ..+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLESREY-RDAQEFGADVRLMFSN 85 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHH-cCCCCCHHHHHHHHccCCC-CCHHHHHHHHHHHHHH
Confidence 3456779988888876554 233333 22 3456666 9999999999999999998 6899999999999999
Q ss_pred HHHH---hHHHHHHHHHhhhhhHhhHHhh
Q 009258 206 FQEI---GAEIITLAKKLSELSQASYIEH 231 (539)
Q Consensus 206 l~~~---g~ev~~LA~~Ls~~s~~~~~~~ 231 (539)
+..+ +..+...|..|...+...+.+.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9887 6789999999999877655543
No 53
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=98.63 E-value=2.8e-08 Score=87.39 Aligned_cols=95 Identities=14% Similarity=0.318 Sum_probs=76.7
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
......|..+|..+...+ .+.++..+. .+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+..+
T Consensus 12 ~~~~~~c~~il~~l~~~~-~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 88 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHE-DAWPFLLPVNLKLVPGYKKV-IKKPMDFSTIREKLSSGQY-PNLETFALDVRLVFDNCETF 88 (117)
T ss_dssp TTHHHHHHHHHHHHHTST-TCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CchhhcCcCChhhcCChHHH-cCCCCCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 447788988887777654 555554322 345566 9999999999999999998 68999999999999999887
Q ss_pred ---hHHHHHHHHHhhhhhHhhHHhhc
Q 009258 210 ---GAEIITLAKKLSELSQASYIEHV 232 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~~~~~~~ 232 (539)
+..+...|..|...+...+.+.+
T Consensus 89 N~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 89 NEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999888777654
No 54
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=98.62 E-value=4.7e-08 Score=85.91 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhcc-----hhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHH
Q 009258 137 NTDMCQRAFLEIITSE-----KFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKF 206 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~-----~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl 206 (539)
....|+.+|..+.... .++.++..+. .+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na 83 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEV-VSQPIDLMKIQQKLKMEEY-DDVNLLTADFQLLFNNA 83 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHH-hCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHH
Confidence 5678988877777553 3444444222 345566 8999999999999999988 78999999999999999
Q ss_pred HHH---hHHHHHHHHHhhhhhHhhHHhhcC
Q 009258 207 QEI---GAEIITLAKKLSELSQASYIEHVG 233 (539)
Q Consensus 207 ~~~---g~ev~~LA~~Ls~~s~~~~~~~~~ 233 (539)
..+ +..+...|..|..++...+.+.+.
T Consensus 84 ~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 84 KSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 887 678999999999999988887764
No 55
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=98.62 E-value=2.8e-08 Score=89.06 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=77.6
Q ss_pred CCcHHHHHHHHHHHHhcc------hhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSE------KFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVW 203 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~------~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vw 203 (539)
+..+..|+.+|..++... .++.++..+. .+|..+ |.+||||+||..||.+|.| .+++.|.+||++||
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKY-RSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Confidence 456788998888888643 2555555332 346666 9999999999999999988 78999999999999
Q ss_pred HHHHHH---hHHHHHHHHHhhhhhHhhHHhhcC
Q 009258 204 KKFQEI---GAEIITLAKKLSELSQASYIEHVG 233 (539)
Q Consensus 204 knl~~~---g~ev~~LA~~Ls~~s~~~~~~~~~ 233 (539)
.|+..+ +..+...|..|..++...+.+...
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 999887 678999999999998877765543
No 56
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=98.62 E-value=2.7e-08 Score=87.40 Aligned_cols=93 Identities=10% Similarity=0.244 Sum_probs=73.0
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
......|..+|..+...+ .+.++..+. .+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+..+
T Consensus 15 ~~~~~~~~~il~~l~~~~-~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 91 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHK-DSWPFLEPVDESYAPNYYQI-IKAPMDISSMEKKLNGGLY-CTKEEFVNDMKTMFRNCRKY 91 (116)
T ss_dssp CCHHHHHHHHHHHHHHST-TCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CcHhhcCcCChhhccChHHH-cCCCCCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 446677887777766554 444444222 346666 9999999999999999998 78999999999999999877
Q ss_pred ---hHHHHHHHHHhhhhhHhhHHh
Q 009258 210 ---GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
+..+...|..|...+...+++
T Consensus 92 N~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 92 NGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 678999999999988776654
No 57
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.61 E-value=5.4e-08 Score=92.80 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHh-hh-cCCCcccCcccchhhhhhhcccc--ccCchhhhhhhHHHHHHHHHHH--hH
Q 009258 138 TDMCQRAFLEIITSEKFTLLCKVLL-GN-FQGIKVDRVFNLSAINSRMKQGA--YENSPMQFMADVQQVWKKFQEI--GA 211 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~~~~~~~~l~-~~-~~~~~~~~~~Dl~~Id~rl~~G~--Y~~sp~~f~~DV~~vwknl~~~--g~ 211 (539)
...|+.+|..+...+ .+.++.... .. |..+++.+||||+||..||.+|. +|.+++.|++||++||.|+..+ +.
T Consensus 78 ~~~c~~iL~~l~~~~-~s~pF~~pV~~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN~~s 156 (189)
T 2ro1_A 78 QRKCERVLLALFCHE-PCRPLHQLATDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDK 156 (189)
T ss_dssp HHHHHHHHHHHHHST-THHHHHSCSCCTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHhhcccCc-cchhhcCCCChhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 456998888887755 677776433 23 55565669999999999999994 5589999999999999999887 45
Q ss_pred HHHHHHHHhhhhhHhhHHhhcCC
Q 009258 212 EIITLAKKLSELSQASYIEHVGG 234 (539)
Q Consensus 212 ev~~LA~~Ls~~s~~~~~~~~~~ 234 (539)
++..+|..|...|...+.+....
T Consensus 157 ~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 157 ADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 67789999999998888777654
No 58
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.60 E-value=5.8e-08 Score=81.65 Aligned_cols=50 Identities=26% Similarity=0.859 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCCceeeCc--CC-CcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 267 YKVHTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 267 ~~~~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
.+...| +|++..+ +.||.||. |+ .+||+.|+ +|+..|.+.|||+.|..+.
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CV--gl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTT--TCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccC--CcCcCCCCCEECcCccCcC
Confidence 344467 9988664 68999999 76 79999999 6889999999999998544
No 59
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.60 E-value=7.6e-09 Score=80.50 Aligned_cols=45 Identities=29% Similarity=0.957 Sum_probs=38.6
Q ss_pred ccccccccccCCCCceeeCc--CC-CcCcccccCCCCCCCCCCCcccCCccc
Q 009258 270 HTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
..| +|++.++ +.||.||+ |. .+||+.|+ +++.+|.|.|||+.|..
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cv--gl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcC--CCCcCCCCCEECcCccC
Confidence 367 8988654 67999999 55 89999999 68999999999999974
No 60
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=98.59 E-value=4.1e-08 Score=85.70 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH--
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI-- 209 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~-- 209 (539)
....|..+|..+...+ .+.++..+. .+|..+ |.+||||+||..||.+|.| .+++.|.+||++||.|+..+
T Consensus 8 l~~~~~~il~~l~~~~-~~~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 8 LYTTLKNLLAQIKSHP-SAWPFMEPVKKSEAPDYYEV-IRFPIDLKTMTERLRSRYY-VTRKLFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHHHHHSG-GGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCC-CchhhcCCCCcccccCHHHH-ccCCcCHHHHHHHHcCCCC-cCHHHHHHHHHHHHHHHHHHCC
Confidence 3456877776665544 555555332 234455 8999999999999999988 77999999999999999887
Q ss_pred -hHHHHHHHHHhhhhhHhhHHh
Q 009258 210 -GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 210 -g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
+..+...|..|...+...+.+
T Consensus 85 ~~s~~~~~A~~L~~~f~~~~~~ 106 (112)
T 3d7c_A 85 PDSEYCRCASALEKFFYFKLKE 106 (112)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 568999999999987776554
No 61
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=98.58 E-value=3.5e-08 Score=86.98 Aligned_cols=92 Identities=10% Similarity=0.106 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcchhHHHHHHH-----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---h
Q 009258 139 DMCQRAFLEIITSEKFTLLCKVL-----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---G 210 (539)
Q Consensus 139 ~~c~~~l~~~~~s~~~~~~~~~l-----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g 210 (539)
..|..+|..+...+ .+.++... ..+|..+ |.+||||+||..||.+|.| .+++.|.+||++||.|+..+ +
T Consensus 11 ~~l~~il~~L~~~~-~~~~F~~PVd~~~~pdY~~i-Ik~PMDL~tI~~kl~~~~Y-~s~~ef~~Dv~Li~~Na~~yN~~~ 87 (117)
T 2i7k_A 11 EALNQLMRQLQRKD-PSAFFSFPVTDFIAPGYSMI-IKHPMDFSTMKEKIKNNDY-QSIEELKDNFKLMCTNAMIYNKPE 87 (117)
T ss_dssp HHHHHHHHHHHTSS-GGGTSSSCCCTTTSSSHHHH-CSCCCCHHHHHHHHTTTSC-CSHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHhCc-ccHHhcCCCCccccCCHHHH-hCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45665665555544 33333322 2335555 8999999999999999998 67999999999999999887 5
Q ss_pred HHHHHHHHHhhhhhHhhHHhhcC
Q 009258 211 AEIITLAKKLSELSQASYIEHVG 233 (539)
Q Consensus 211 ~ev~~LA~~Ls~~s~~~~~~~~~ 233 (539)
..+...|..|...+...+...+.
T Consensus 88 s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 88 TIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999998888877764
No 62
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=4.6e-08 Score=86.89 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHHHhcch-----hHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEK-----FTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWK 204 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~-----~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwk 204 (539)
+..+..|+.+|..++.... ++.++..+. .+|..+ |.+||||+||..||.+|.| .+++.|.+||++||.
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKY-RSLGDLEKDVMLLCH 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHH-CSSCCCHHHHHHHHTTTCC-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Confidence 4567779888887776531 444444332 335556 9999999999999999988 779999999999999
Q ss_pred HHHHH---hHHHHHHHHHhhhhhHhhHHh
Q 009258 205 KFQEI---GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 205 nl~~~---g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
|+..+ +..+...|..|..++...+++
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 118 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQS 118 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99887 568999999999987766553
No 63
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.58 E-value=9.8e-09 Score=79.61 Aligned_cols=44 Identities=30% Similarity=0.961 Sum_probs=38.4
Q ss_pred cccccccccCCCCceeeCc--CC-CcCcccccCCCCCCCCCCCcccCCccc
Q 009258 271 TCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
.| +|++.++ +.|+.||+ |+ .+||+.|+ +++..|.|.||||.|..
T Consensus 11 yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cv--gl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 11 YC-LCHQVSY-GEMIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred EE-ECCCCCC-CCeeEeeCCCCCCCCEecccC--CcccCCCCCEECcCccC
Confidence 67 8988654 67999999 77 79999999 78999999999999974
No 64
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=98.57 E-value=3.8e-08 Score=91.22 Aligned_cols=96 Identities=11% Similarity=0.147 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHHHhc----chhHHHHHHH-----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITS----EKFTLLCKVL-----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKK 205 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s----~~~~~~~~~l-----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwkn 205 (539)
+-....|..+|..|+.. .+.+.++..+ ..+|..+ |.+||||+||..||.+|.| .++..|..||++||.|
T Consensus 24 ~d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y-~s~~ef~~Dv~Lif~N 101 (158)
T 3uv4_A 24 DDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKY-QSRESFLDDVNLILAN 101 (158)
T ss_dssp SHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHH-cCCccCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHH
Confidence 44566688888888753 3344444422 2345566 9999999999999999988 7899999999999999
Q ss_pred HHHH---hHHHHHHHHHhhhhhHhhHHhhc
Q 009258 206 FQEI---GAEIITLAKKLSELSQASYIEHV 232 (539)
Q Consensus 206 l~~~---g~ev~~LA~~Ls~~s~~~~~~~~ 232 (539)
+..+ +..+...|..|...+...+.+..
T Consensus 102 a~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 102 SVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 56788899999888876666544
No 65
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=98.57 E-value=6.1e-08 Score=85.85 Aligned_cols=93 Identities=12% Similarity=0.209 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
......|..+|..+...+ .+.++..+. .+|..+ |++||||+||..||.+|.| .+++.|.+||++||.|+..+
T Consensus 12 ~~~~~~~~~il~~l~~~~-~a~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na~~y 88 (121)
T 1e6i_A 12 GPHDAAIQNILTELQNHA-AAWPFLQPVNKEEVPDYYDF-IKEPMDLSTMEIKLESNKY-QKMEDFIYDARLVFNNCRMY 88 (121)
T ss_dssp CTTHHHHHHHHHHHHHST-TCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCC-CchhhCCCCChhhCcCHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 345778998887777654 444444332 345556 9999999999999999998 77999999999999999887
Q ss_pred ---hHHHHHHHHHhhhhhHhhHHh
Q 009258 210 ---GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
+..+...|..|...+...+.+
T Consensus 89 N~~~s~i~~~A~~L~~~f~~~~~~ 112 (121)
T 1e6i_A 89 NGENTSYYKYANRLEKFFNNKVKE 112 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999887765543
No 66
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.56 E-value=1.9e-08 Score=84.40 Aligned_cols=46 Identities=28% Similarity=0.806 Sum_probs=38.7
Q ss_pred cccccccccccCCCCceeeCcCC---CcCcccccCCCCCCCCCCCcccCC-ccc
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCE---EMYHLSCIEPAFKDIPPKSWYCAR-CTA 318 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~---~~~H~~Cl~P~l~~~P~g~W~C~~-C~~ 318 (539)
...| +|+...+ +.||.||.|+ .+||+.|+ +|+..|.+.|||+. |..
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CV--gl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCV--GLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTS--SCSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCC-CCEEEecCCCCccccCcCccC--CCCcCCCCCccCChhhcc
Confidence 3367 8987654 4799999976 89999999 78899999999999 973
No 67
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=98.55 E-value=6.3e-08 Score=85.42 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHH-------hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
....|..+|..++..++.+.++... ..+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+..+
T Consensus 12 l~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 12 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDI-VKNPMDLSTIKRKLDTGQY-QEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHH-hcCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 4455777777777767777766532 2346666 8999999999999999998 77999999999999999887
Q ss_pred ---hHHHHHHHHHhhhhhHhhHHhhc
Q 009258 210 ---GAEIITLAKKLSELSQASYIEHV 232 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~~~~~~~ 232 (539)
+..+...|..|...+...+.+..
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999998877665543
No 68
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=98.55 E-value=9.3e-08 Score=86.31 Aligned_cols=98 Identities=18% Similarity=0.337 Sum_probs=76.4
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHH----hhhcCCCcccCcccchhhhhhhccc-cccCchhhhhhhHHHHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVL----LGNFQGIKVDRVFNLSAINSRMKQG-AYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l----~~~~~~~~~~~~~Dl~~Id~rl~~G-~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
+.....|+++|..|...+ .+.++... ..+|..+ |.+||||+||..||.++ -+|.+++.|.+||++||.|+..+
T Consensus 19 p~~~~~c~~il~~L~~~~-~s~~F~~Pv~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~y 96 (135)
T 2yyn_A 19 PIDKRKCERLLLFLYCHE-MSLAFQDPVPLTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEF 96 (135)
T ss_dssp HHHHHHHHHHHHHHHTSG-GGGGGSSCCCTTSTTHHHH-CSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc-cchhhcCCCcccCCCHHHH-cCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 335677998888777654 55554422 2335555 99999999999999985 24488999999999999999887
Q ss_pred ---hHHHHHHHHHhhhhhHhhHHhhcCC
Q 009258 210 ---GAEIITLAKKLSELSQASYIEHVGG 234 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~~~~~~~~~ 234 (539)
+..+...|..|...+...+.+....
T Consensus 97 N~~~s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 97 NEPDSEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 6789999999999988888776654
No 69
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.51 E-value=2.2e-08 Score=78.38 Aligned_cols=46 Identities=30% Similarity=0.930 Sum_probs=38.7
Q ss_pred ccccccccccCCCCceeeCc--CC-CcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 270 HTCRQCEEKAGEKDGLVCDS--CE-EMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
..| +|++..+ +.|+.||. |. .+||+.|+ +++..|.+.||||.|..+
T Consensus 12 ~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHTC
T ss_pred cEE-ECCCCCC-CCeeeeeCCCCCcccEecccC--CcCcCCCCCEECcCcccC
Confidence 367 8988654 57999999 55 99999999 688889999999999753
No 70
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=98.50 E-value=5.6e-08 Score=85.91 Aligned_cols=93 Identities=15% Similarity=0.288 Sum_probs=69.5
Q ss_pred CcHHHHHHHHHHHHhcch-----hHHHHHH-----HhhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHH
Q 009258 136 TNTDMCQRAFLEIITSEK-----FTLLCKV-----LLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKK 205 (539)
Q Consensus 136 ~~~~~c~~~l~~~~~s~~-----~~~~~~~-----l~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwkn 205 (539)
.....|+.+|..|..... .+.++.. ...+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|
T Consensus 8 ~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 8 YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAI-IKEPIDLKTIAQRIQNGSY-KSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCC-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHHccCCC-CCHHHHHHHHHHHHHH
Confidence 345567666666655433 1223321 12346666 8999999999999999988 7899999999999999
Q ss_pred HHHH---hHHHHHHHHHhhhhhHhhHHh
Q 009258 206 FQEI---GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 206 l~~~---g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
+..+ +..+...|..|..++...+.+
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9887 568999999999988766654
No 71
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=98.49 E-value=1e-07 Score=88.00 Aligned_cols=91 Identities=11% Similarity=0.265 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcchhHHHHHHHh-------hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---
Q 009258 140 MCQRAFLEIITSEKFTLLCKVLL-------GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI--- 209 (539)
Q Consensus 140 ~c~~~l~~~~~s~~~~~~~~~l~-------~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~--- 209 (539)
.|...++..|...+++.++.... .+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+..+
T Consensus 35 ~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y-~s~~ef~~Dv~Lif~Na~~YN~~ 112 (154)
T 4alg_A 35 YLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKI-IKQPMDMGTIKRRLENNYY-WAASECMQDFNTMFTNCYIYNKP 112 (154)
T ss_dssp HHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCC
Confidence 34444555566666777776433 345566 9999999999999999988 68899999999999999887
Q ss_pred hHHHHHHHHHhhhhhHhhHHhhc
Q 009258 210 GAEIITLAKKLSELSQASYIEHV 232 (539)
Q Consensus 210 g~ev~~LA~~Ls~~s~~~~~~~~ 232 (539)
+..+..+|..|..++...+.+..
T Consensus 113 ~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 113 TDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCC
Confidence 67899999999998777665544
No 72
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=98.49 E-value=1.4e-07 Score=88.10 Aligned_cols=95 Identities=16% Similarity=0.276 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHH-------hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQ 207 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~ 207 (539)
..-...|..+|..+...+ .+.++..+ ..+|..+ |.+||||+||..||.+|.| .++..|..||++||.|+.
T Consensus 20 ~~~~~~~~~il~~L~~~~-~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y-~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYE-GGHIFEKLVDAKKQNCPDYYDV-IKNPMSFSCIKTKLKKGQY-AYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp HHHHHHHHHHHHHHTTST-TGGGGSSCCC-----CCCGGGC-CSSCCCHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CChhhcCCCChhhccCCCHHHh-cCCCCCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHH
Confidence 335566877777766544 45555433 3456677 9999999999999999998 679999999999999998
Q ss_pred HH---hHHHHHHHHHhhhhhHhhHHhhc
Q 009258 208 EI---GAEIITLAKKLSELSQASYIEHV 232 (539)
Q Consensus 208 ~~---g~ev~~LA~~Ls~~s~~~~~~~~ 232 (539)
.+ +..+..+|..|..++...+.+..
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 87 67899999999999887666543
No 73
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.49 E-value=1.9e-07 Score=88.47 Aligned_cols=93 Identities=19% Similarity=0.377 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHH---hhhcCCCcccCcccchhhhhhhcc--ccccCchhhhhhhHHHHHHHHHHH--
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVL---LGNFQGIKVDRVFNLSAINSRMKQ--GAYENSPMQFMADVQQVWKKFQEI-- 209 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l---~~~~~~~~~~~~~Dl~~Id~rl~~--G~Y~~sp~~f~~DV~~vwknl~~~-- 209 (539)
....|+.+|..+...+....|-+-+ ..+|..+ |.+||||+||..||.+ |.| .+++.|.+||++||.|...+
T Consensus 82 ~~~~c~~il~~l~~~~~s~~F~~Pv~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~Y-~s~~ef~~Dv~li~~Na~~yN~ 159 (184)
T 3o36_A 82 DKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKI-IKNPMDLSTIKKRLQEDYSMY-SKPEDFVADFRLIFQNCAEFNE 159 (184)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHSCCCTTSTTHHHH-CSSCCCHHHHHHHHHSTTCSC-CSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhchhhhhhccccccCCCchhhh-cCCCCCHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHHHCC
Confidence 4567998888888776444333322 2335555 8999999999999998 555 88999999999999999887
Q ss_pred -hHHHHHHHHHhhhhhHhhHHhh
Q 009258 210 -GAEIITLAKKLSELSQASYIEH 231 (539)
Q Consensus 210 -g~ev~~LA~~Ls~~s~~~~~~~ 231 (539)
+.++...|..|...+...+.+.
T Consensus 160 ~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 160 PDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999988877654
No 74
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=98.49 E-value=1.2e-07 Score=84.09 Aligned_cols=97 Identities=15% Similarity=0.343 Sum_probs=76.2
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
..-...|..+|..+...+ .+.++..+. .+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+..+
T Consensus 9 ~~~~~~c~~il~~l~~~~-~s~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCE-DSEPFRQPVDLVEYPDYRDI-IDTPMDFGTVRETLDAGNY-DSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp -CHHHHHHHHHHHHHTSG-GGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CcHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 557778988887777665 444444322 235555 9999999999999999988 78999999999999999887
Q ss_pred ----hHHHHHHHHHhhhhhHhhHHhhcCC
Q 009258 210 ----GAEIITLAKKLSELSQASYIEHVGG 234 (539)
Q Consensus 210 ----g~ev~~LA~~Ls~~s~~~~~~~~~~ 234 (539)
+..+...|..|...+...+.+....
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 114 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKKISSD 114 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999988877776643
No 75
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.49 E-value=2.2e-08 Score=90.86 Aligned_cols=50 Identities=26% Similarity=0.658 Sum_probs=43.8
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCC-------CCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKD-------IPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~-------~P~g~W~C~~C~~~~ 320 (539)
.++.|.+|+. +|+|++||+|+++||+.|+.|++.. .|.|+|+|+.|..+.
T Consensus 62 ~~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 62 MDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp CBCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred CCCeecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 4568999997 8999999999999999999999862 489999999998544
No 76
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=98.48 E-value=1.6e-07 Score=84.61 Aligned_cols=96 Identities=16% Similarity=0.344 Sum_probs=76.2
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
..-...|..+|..+...+ .+.++..+. .+|..+ |.+||||+||..||.+|.| .+++.|.+||++||.|+..+
T Consensus 20 ~~l~~~~~~il~~l~~~~-~s~~F~~pv~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCE-DSEPFRQPVDLLEYPDYRDI-IDTPMDFATVRETLEAGNY-ESPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp STHHHHHHHHHHHHHHSG-GGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CChhhcCCCChhhCCCHHHH-hCCCcCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 557788987777766654 455554322 345566 9999999999999999998 68999999999999999877
Q ss_pred ----hHHHHHHHHHhhhhhHhhHHhhcC
Q 009258 210 ----GAEIITLAKKLSELSQASYIEHVG 233 (539)
Q Consensus 210 ----g~ev~~LA~~Ls~~s~~~~~~~~~ 233 (539)
+..+...|..|...+...+.+.+.
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999998887776654
No 77
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=98.47 E-value=1.1e-07 Score=85.02 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=64.5
Q ss_pred HHHHHhcchhHHHHHHH-------hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHH
Q 009258 145 FLEIITSEKFTLLCKVL-------LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEII 214 (539)
Q Consensus 145 l~~~~~s~~~~~~~~~l-------~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~ 214 (539)
++.-|...+++.++... ..+|..+ |.+||||+||..||.+|.| .+.+.|.+||++||.|+..+ +..+.
T Consensus 29 il~~L~~~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~~~s~i~ 106 (127)
T 2oss_A 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKI-IKTPMDMGTIKKRLENNYY-WNAQECIQDFNTMFTNCYIYNKPGDDIV 106 (127)
T ss_dssp HHHHHHTSTTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHhCccchhhcCCCChhhccCccHHHH-cCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 33444455566665533 2345556 9999999999999999988 77899999999999999887 67899
Q ss_pred HHHHHhhhhhHhhHH
Q 009258 215 TLAKKLSELSQASYI 229 (539)
Q Consensus 215 ~LA~~Ls~~s~~~~~ 229 (539)
.+|..|...+...+.
T Consensus 107 ~~A~~L~~~f~~~~~ 121 (127)
T 2oss_A 107 LMAEALEKLFLQKIN 121 (127)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988766544
No 78
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=9e-08 Score=84.79 Aligned_cols=90 Identities=8% Similarity=0.100 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHH-----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---
Q 009258 138 TDMCQRAFLEIITSEKFTLLCKVL-----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI--- 209 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~~~~~~~~l-----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~--- 209 (539)
...|+.+|..+...+ .+.++..+ ..+|..+ |.+||||+||..||.+|.| .+++.|.+||++||.|+..+
T Consensus 9 ~~~l~~il~~l~~~~-~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na~~yN~~ 85 (121)
T 2d9e_A 9 LILLRKTLEQLQEKD-TGNIFSEPVPLSEVPDYLDH-IKKPMDFFTMKQNLEAYRY-LNFDDFEEDFNLIVSNCLKYNAK 85 (121)
T ss_dssp HHHHHHHHHHHHHHC-SSCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHcCC-ccHhhCCcCCccccCCHHHH-cCCCcCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCC
Confidence 467887777776654 33343322 2335555 8999999999999999988 77999999999999999887
Q ss_pred hHHHHHHHHHhhhhhHhhHHh
Q 009258 210 GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 210 g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
+..+...|..|...+...+.+
T Consensus 86 ~s~~~~~A~~L~~~~~~~l~~ 106 (121)
T 2d9e_A 86 DTIFYRAAVRLREQGGAVLRQ 106 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 568888999999887766554
No 79
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=98.45 E-value=1.5e-07 Score=83.64 Aligned_cols=94 Identities=10% Similarity=0.111 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHHHhc-----chhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHH
Q 009258 136 TNTDMCQRAFLEIITS-----EKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKK 205 (539)
Q Consensus 136 ~~~~~c~~~l~~~~~s-----~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwkn 205 (539)
.....|+.+|..|..- ..++.++..+. .+|..+ |.+||||+||..||.+|.| .++..|..||++||.|
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~N 92 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLT-IKKPMDMEKIRSHMMANKY-QDIDSMVEDFVMMFNN 92 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHH-cCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHH
Confidence 3556788777666652 22333433222 346666 8999999999999999998 7899999999999999
Q ss_pred HHHH---hHHHHHHHHHhhhhhHhhHHhh
Q 009258 206 FQEI---GAEIITLAKKLSELSQASYIEH 231 (539)
Q Consensus 206 l~~~---g~ev~~LA~~Ls~~s~~~~~~~ 231 (539)
+..+ +..+...|..|..++...+++.
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 121 (124)
T 3mb4_A 93 ACTYNEPESLIYKDALVLHKVLLETRRDL 121 (124)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9887 6789999999999888766654
No 80
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=98.41 E-value=1.8e-07 Score=84.37 Aligned_cols=94 Identities=7% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHH-----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVL-----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l-----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
......|+.+|..+...+ .+.++..+ ..+|..+ |.+||||+||..||.+|.| .+++.|.+||++||.|+..+
T Consensus 12 ~~l~~~l~~il~~l~~~~-~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDH-IKHPMDFATMRKRLEAQGY-KNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CHHHHHHHHHHHHHHHTC-TTCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-cchhhcCCCChhhcCCHHHH-hCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 335667887777766654 34333322 2345566 9999999999999999988 78999999999999999887
Q ss_pred ---hHHHHHHHHHhhhhhHhhHHhh
Q 009258 210 ---GAEIITLAKKLSELSQASYIEH 231 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~~~~~~ 231 (539)
+..+...|..|...+...+.+.
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999998887766654
No 81
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.41 E-value=1.4e-07 Score=88.44 Aligned_cols=90 Identities=11% Similarity=0.245 Sum_probs=70.3
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHH-----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH--
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVL-----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI-- 209 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l-----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~-- 209 (539)
....|+++|..+...+ .+.++..+ ..+|..+ |.+||||+||..||.+|.| .+++.|.+||++||.|+..+
T Consensus 73 ~~~~l~~il~~l~~~~-~~~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 73 DYEGLKRVLRSLQAHK-MAWPFLEPVDPNDAPDYYGV-IKEPMDLATMEERVQRRYY-EKLTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp HHHHHHHHHHHHHTSG-GGTTTSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCC-CBHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhh-hhhhhhcCCCcccCCchHHH-hCCcCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHCC
Confidence 4567888887777654 44444422 2345566 8999999999999999988 77999999999999999887
Q ss_pred -hHHHHHHHHHhhhhhHhhHH
Q 009258 210 -GAEIITLAKKLSELSQASYI 229 (539)
Q Consensus 210 -g~ev~~LA~~Ls~~s~~~~~ 229 (539)
+..+...|..|...+...+.
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~ 170 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLK 170 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 56888999999988765443
No 82
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=98.41 E-value=2.3e-07 Score=85.13 Aligned_cols=96 Identities=14% Similarity=0.207 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcch------hHHHHHHH-----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHH
Q 009258 138 TDMCQRAFLEIITSEK------FTLLCKVL-----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKF 206 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~------~~~~~~~l-----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl 206 (539)
...|+.+|..++.-.+ ++.++..+ ..+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~ef~~D~~li~~Na 103 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKI-ILEPMDLKIIEHNIRNDKY-AGEEGMIEDMKLMFRNA 103 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHH-hCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHH
Confidence 5567766666655332 23343221 2335566 8999999999999999998 78999999999999999
Q ss_pred HHH---hHHHHHHHHHhhhhhHhhHHhhcCCC
Q 009258 207 QEI---GAEIITLAKKLSELSQASYIEHVGGS 235 (539)
Q Consensus 207 ~~~---g~ev~~LA~~Ls~~s~~~~~~~~~~~ 235 (539)
..+ +..+...|..|...+...+.+....+
T Consensus 104 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~p 135 (150)
T 3tlp_A 104 RHYNEEGSQVYNDAHILEKLLKEKRKELGPLP 135 (150)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 887 67899999999999988887766544
No 83
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=98.38 E-value=1.9e-07 Score=82.84 Aligned_cols=91 Identities=11% Similarity=0.180 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHH----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVL----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI--- 209 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~--- 209 (539)
....|..+|..+...+....+-..+ ..+|..+ |.+||||+||..|+.+|.| .+++.|..||++||.|+..+
T Consensus 14 ~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~yN~~ 91 (123)
T 3hme_A 14 IQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMI-IKHPMDFGTMKDKIVANEY-KSVTEFKADFKLMCDNAMTYNRP 91 (123)
T ss_dssp HHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-CSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHH-CCCCCCHHHHHHHhccCCC-CCHHHHHHHHHHHHHHHHHHCCC
Confidence 4566887777777665433222222 2345566 8999999999999999998 78999999999999999887
Q ss_pred hHHHHHHHHHhhhhhHhhHH
Q 009258 210 GAEIITLAKKLSELSQASYI 229 (539)
Q Consensus 210 g~ev~~LA~~Ls~~s~~~~~ 229 (539)
+..+...|..|...+...+.
T Consensus 92 ~s~~~~~A~~L~~~~~~~~~ 111 (123)
T 3hme_A 92 DTVYYKLAKKILHAGFKMMS 111 (123)
T ss_dssp TSHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 56888899998887665443
No 84
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=98.38 E-value=2.5e-07 Score=82.34 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHHhcc-----hhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHH
Q 009258 137 NTDMCQRAFLEIITSE-----KFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKF 206 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~-----~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl 206 (539)
....|+.++..|..-. .++.++..+. .+|..+ |.+||||+||..||.+|.| .++..|.+|+++||.|+
T Consensus 10 l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 10 LAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEK-ISDPLDLITIEKQILTGYY-KTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHH-CSSCCCHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHH
Confidence 3455665555555422 2344443222 335555 9999999999999999988 78999999999999999
Q ss_pred HHH---hHHHHHHHHHhhhhhHhhHHhhc
Q 009258 207 QEI---GAEIITLAKKLSELSQASYIEHV 232 (539)
Q Consensus 207 ~~~---g~ev~~LA~~Ls~~s~~~~~~~~ 232 (539)
..+ +..+...|..|...+.....+..
T Consensus 88 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 116 (126)
T 3mqm_A 88 EKYYGRKSPVGRDVCRLRKAYYNARHEAS 116 (126)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 877 67899999999998887666554
No 85
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=6.5e-07 Score=80.39 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---h----H
Q 009258 139 DMCQRAFLEIITSEKFTLLCKVLLGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---G----A 211 (539)
Q Consensus 139 ~~c~~~l~~~~~s~~~~~~~~~l~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g----~ 211 (539)
..|+.+|..+...+ .+.++.....+|..+ |.+||||+||..||.+|.| .+++.|.+||++||.|+..+ + .
T Consensus 15 ~~~~~il~~l~~~~-~~~~F~~P~pdY~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~~f~~D~~Li~~Na~~yN~~~s~~~~ 91 (131)
T 2dkw_A 15 LFLRDVTKRLATDK-RFNIFSKPVSDYLEV-IKEPMDLSTVITKIDKHNY-LTAKDFLKDIDLICSNALEYNPDKDPGDK 91 (131)
T ss_dssp HHHHHHHHHHHHSG-GGCTTSSCCSSCTTS-CSSCCCHHHHHHHHHTTCC-CSSHHHHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHHHHHHHHHhCc-cchhhcCcCccHHhH-cCCCcCHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHCCCCChhHH
Confidence 34766666665544 344443346778887 9999999999999999988 67999999999999999887 2 2
Q ss_pred HHHHHHHHhhhhhHhhHHhhcCC
Q 009258 212 EIITLAKKLSELSQASYIEHVGG 234 (539)
Q Consensus 212 ev~~LA~~Ls~~s~~~~~~~~~~ 234 (539)
.+...|..|.+.+..........
T Consensus 92 ~i~~~A~~L~~~~~~~l~~~l~~ 114 (131)
T 2dkw_A 92 IIRHRACTLKDTAHAIIAAELDP 114 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888887777666555543
No 86
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=98.27 E-value=8.8e-07 Score=79.41 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=59.7
Q ss_pred hcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHHhhcC
Q 009258 164 NFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHVG 233 (539)
Q Consensus 164 ~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~~~~~ 233 (539)
+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+..+ +..+...|..|...+...+.+...
T Consensus 55 dY~~i-Ik~PMdL~tI~~kL~~~~Y-~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 125 (130)
T 3k2j_A 55 DYYQQ-IKMPISLQQIRTKLKNQEY-ETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125 (130)
T ss_dssp HHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-cCCCCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556 8999999999999999988 78999999999999999887 568999999999998887776653
No 87
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.26 E-value=3.1e-07 Score=79.57 Aligned_cols=43 Identities=40% Similarity=0.956 Sum_probs=37.2
Q ss_pred ccccccccCCCCCceecc--CCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|+ +++.||.|| .|+++||++|++ |..+|.|+|+|+.|..
T Consensus 17 ~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 17 YCFQCG---DGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp SCTTTC---CCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred CCCcCC---CCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 466675 467899999 899999999998 7899999999998864
No 88
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=98.21 E-value=1.8e-06 Score=77.27 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHHh----
Q 009258 140 MCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEIG---- 210 (539)
Q Consensus 140 ~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~g---- 210 (539)
.|+.+|..+...+ .+.++..+. .+|..+ |.+||||+||..||.+|.| .++..|..||++||.|+..+.
T Consensus 14 ~l~~il~~l~~~~-~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~yN~~~s 90 (130)
T 3dai_A 14 FLRNVTHRLAIDK-RFRVFTKPVDPDEVPDYVTV-IKQPMDLSSVISKIDLHKY-LTVKDYLRDIDLICSNALEYNPDRD 90 (130)
T ss_dssp HHHHHHHHHHTSG-GGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHcCC-ccHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4555554444444 344443222 235556 9999999999999999998 789999999999999998772
Q ss_pred ---HHHHHHHHHhhhhhHhhHHhhc
Q 009258 211 ---AEIITLAKKLSELSQASYIEHV 232 (539)
Q Consensus 211 ---~ev~~LA~~Ls~~s~~~~~~~~ 232 (539)
..+...|..|.+.+.....+..
T Consensus 91 ~~~~~i~~~A~~L~~~~~~~i~~el 115 (130)
T 3dai_A 91 PGDRLIRHRACALRDTAYAIIKEEL 115 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345677777776666555443
No 89
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.21 E-value=5.3e-07 Score=72.41 Aligned_cols=43 Identities=30% Similarity=0.922 Sum_probs=35.3
Q ss_pred cccccCCCCCceeccC--CC-CcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 442 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
+|++..+ +.||.||. |+ .+||+.|+. |+..|.++|+|+.|...
T Consensus 20 ~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 20 LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 4665443 67999999 77 699999998 57889999999999753
No 90
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.16 E-value=3.2e-07 Score=71.30 Aligned_cols=42 Identities=31% Similarity=0.950 Sum_probs=34.8
Q ss_pred cccccCCCCCceeccC--CC-CcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 442 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
+|++..+ +.||.||. |+ .+||+.|+. |+.+|.++|+|+.|..
T Consensus 14 ~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 14 LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 5666543 68999999 55 799999998 5788999999999964
No 91
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.14 E-value=8.8e-07 Score=70.54 Aligned_cols=49 Identities=24% Similarity=0.676 Sum_probs=40.0
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
+.-.| +|+...+++.||.||.|..+||..|+......+| +.|+|+.|..
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 33368 9999877778999999999999999966555455 6899999974
No 92
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.14 E-value=1.1e-06 Score=73.96 Aligned_cols=43 Identities=30% Similarity=0.922 Sum_probs=34.9
Q ss_pred cccccCCCCCceeccC--CC-CcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 442 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
+|++..+ +.||.||. |+ .+||+.|+. |...|.++|+|+.|..+
T Consensus 40 iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 40 LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 5665443 57999999 76 799999998 47788899999999753
No 93
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.13 E-value=1.9e-07 Score=83.39 Aligned_cols=51 Identities=27% Similarity=0.679 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCCceeeCcCCCcCcccccCCCC-----CCC--CCCCcccCCccccC
Q 009258 267 YKVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAF-----KDI--PPKSWYCARCTAKG 320 (539)
Q Consensus 267 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l-----~~~--P~g~W~C~~C~~~~ 320 (539)
..++.|.+|+. ++++++||.|+++||..|+.|++ .++ |.++|+|..|..+.
T Consensus 55 g~~~~C~vC~d---GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 55 GMDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp SCBSSCTTTCC---CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCCcCeecCC---CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 34557999997 89999999999999999999874 344 88999999998554
No 94
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.10 E-value=4.9e-07 Score=69.98 Aligned_cols=42 Identities=36% Similarity=0.954 Sum_probs=34.7
Q ss_pred cccccCCCCCceeccC--CC-CcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 442 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
+|++.. .+.|+.||. |+ .+||+.|++ ++..|.++|+|+.|..
T Consensus 13 ~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 13 LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 566644 367999999 77 699999998 5788899999999964
No 95
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=7.9e-07 Score=71.21 Aligned_cols=45 Identities=31% Similarity=0.897 Sum_probs=37.2
Q ss_pred cccccccccCCCCceeeCcCC---CcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCE---EMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~---~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
.|. |+...+ +.|+.||.|+ .+||+.|+ +|+..|.+.|||+.|...
T Consensus 8 yC~-C~~~~~-g~MI~CD~cdC~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 8 YCI-CNQVSY-GEMVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CST-TSCCCC-SSEECCSCTTCSCCCEEHHHH--TCSSCCSSCCCCHHHHHH
T ss_pred EEE-cCCCCC-CCEeEeCCCCCCccCCccccc--ccCcCCCCCEECCCCCcc
Confidence 564 877644 4899999975 89999999 778889999999999743
No 96
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.07 E-value=6.6e-07 Score=75.04 Aligned_cols=41 Identities=32% Similarity=0.805 Sum_probs=33.4
Q ss_pred cccccCCCCCceeccCCC---CcccccCCCCCCCCCCCCCcccCC-Cc
Q 009258 442 ACLTDKDDEKIVMCDGCD---QGYHLYCMDPPRTSVPKGNWFCRK-CD 485 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~C~---~~yH~~Cl~Ppl~~~P~~~W~C~~-C~ 485 (539)
+|+...+ +.||.||.|+ .+||+.|+.. +..|.+.|+|+. |.
T Consensus 30 iC~~~~~-g~MI~CD~c~C~~eWfH~~CVgl--~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 30 FCRNVSY-GPMVACDNPACPFEWFHYGCVGL--KQAPKGKWYCSKDCK 74 (90)
T ss_dssp TTTCCCS-SSEECCCSSSCSCSCEETTTSSC--SSCTTSCCCSSHHHH
T ss_pred EeCCCCC-CCEEEecCCCCccccCcCccCCC--CcCCCCCccCChhhc
Confidence 4555433 4799999977 8999999984 678889999999 96
No 97
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=98.02 E-value=4.6e-06 Score=83.38 Aligned_cols=92 Identities=11% Similarity=0.209 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH--
Q 009258 137 NTDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI-- 209 (539)
Q Consensus 137 ~~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~-- 209 (539)
....|..+|..+...+ .+.++..+. .+|..+ |.+||||+||..||.+|.| .+++.|..||++||.|+..+
T Consensus 15 l~~~l~~il~~l~~~~-~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y-~~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 15 LSSILESIINDMRDLP-NTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLY-PSREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHTST-TCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-CchhhhCCCChhhcCCHHHH-hCCCCcHHHHHHHHHcCCC-CCHHHHHHHHHHHHhhhhhcCC
Confidence 4556777777666654 444444222 345566 8999999999999999998 78999999999999999887
Q ss_pred -hHHHHHHHHHhhhhhHhhHHhh
Q 009258 210 -GAEIITLAKKLSELSQASYIEH 231 (539)
Q Consensus 210 -g~ev~~LA~~Ls~~s~~~~~~~ 231 (539)
+..+...|..|...+...+.+.
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~ 114 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEK 114 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999887666554
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.98 E-value=1.4e-06 Score=79.01 Aligned_cols=46 Identities=22% Similarity=0.702 Sum_probs=39.5
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCC-----C--CCCCCcccCCCcch
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRT-----S--VPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~-----~--~P~~~W~C~~C~~~ 487 (539)
.|.+| ++++.++.||.|+++||+.|+.||+. + .|.++|.|+.|..+
T Consensus 65 ~C~vC---~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 65 QCRWC---AEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCSSS---CCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred eeccc---CCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 57777 56678999999999999999999986 2 48999999999853
No 99
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.96 E-value=1.2e-06 Score=68.48 Aligned_cols=42 Identities=33% Similarity=0.902 Sum_probs=34.1
Q ss_pred cccccCCCCCceeccC--CC-CcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 442 ACLTDKDDEKIVMCDG--CD-QGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
+|++..+ +.||.||. |+ .+||+.|+.. +..|.+.|+|+.|..
T Consensus 15 ~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 15 LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSL--TYKPKGKWYCPKCRG 59 (62)
T ss_dssp TTTEECC-SEEEECSCTTCSSCEEETGGGTC--SSCCSSCCCCHHHHT
T ss_pred ECCCCCC-CCeeeeeCCCCCcccEecccCCc--CcCCCCCEECcCccc
Confidence 5666433 57999999 55 9999999985 677889999999964
No 100
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=97.94 E-value=5.5e-06 Score=82.86 Aligned_cols=90 Identities=12% Similarity=0.167 Sum_probs=68.2
Q ss_pred HHHHHHHHHh----cchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH--
Q 009258 141 CQRAFLEIIT----SEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI-- 209 (539)
Q Consensus 141 c~~~l~~~~~----s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~-- 209 (539)
+..+|..++. +.+.+.++..+. .+|..+ |.+||||+||..||.+|.| .++..|..||++||.|+..+
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~i-Ik~Pmdl~tI~~kl~~~~Y-~~~~~f~~D~~lif~Na~~yN~ 214 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKY-QSRESFLDDVNLILANSVKYNG 214 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHH-hCCcccHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCC
Confidence 4445555443 344455554332 235556 8999999999999999988 78999999999999999887
Q ss_pred -hHHHHHHHHHhhhhhHhhHHhhc
Q 009258 210 -GAEIITLAKKLSELSQASYIEHV 232 (539)
Q Consensus 210 -g~ev~~LA~~Ls~~s~~~~~~~~ 232 (539)
+..+...|..|...+...+.+..
T Consensus 215 ~~s~~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 215 PESQYTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999998887666554
No 101
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.87 E-value=3.6e-06 Score=65.91 Aligned_cols=51 Identities=25% Similarity=0.599 Sum_probs=39.1
Q ss_pred ccccccccccC-CCCceeeCcCCCcCcccccCCCCCCCC-CCCcccCCccccC
Q 009258 270 HTCRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDIP-PKSWYCARCTAKG 320 (539)
Q Consensus 270 ~~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~~ 320 (539)
..|.+|++..+ ++.|+.||.|..+||..|+........ .+.|+|+.|..+.
T Consensus 7 ~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 7 GQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 37999998754 678999999999999999944333222 2679999998544
No 102
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.86 E-value=5.1e-06 Score=66.74 Aligned_cols=49 Identities=31% Similarity=0.693 Sum_probs=37.6
Q ss_pred cccccccccCC-CCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 271 TCRQCEEKAGE-KDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 271 ~C~~C~~~~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
.| +|+...+. ..|+.||.|..+||..|+...........|+|+.|..+.
T Consensus 18 ~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred Ee-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 68 69987544 479999999999999999654332234789999998544
No 103
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.85 E-value=5e-06 Score=66.12 Aligned_cols=44 Identities=25% Similarity=0.691 Sum_probs=36.5
Q ss_pred cccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 442 ACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
+|++..+++.||.||.|..+||..|++.....+| +.|+|+.|..
T Consensus 23 iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 23 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 5677667778999999999999999998755454 6899999963
No 104
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=97.80 E-value=1.5e-05 Score=80.89 Aligned_cols=66 Identities=14% Similarity=0.280 Sum_probs=56.7
Q ss_pred hcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHHhh
Q 009258 164 NFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEH 231 (539)
Q Consensus 164 ~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~~~ 231 (539)
+|..+ |.+||||+||..||.+|.| .++..|.+||++||.|+..+ +..+...|..|...+...+.+.
T Consensus 202 dY~~i-Ik~PmdL~tI~~kl~~~~Y-~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 270 (292)
T 3aad_A 202 DYYKV-IVNPMDLETIRKNISKHKY-QSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 270 (292)
T ss_dssp THHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-cCCcCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455 8999999999999999988 77999999999999999887 5688899999998887666554
No 105
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=97.78 E-value=1e-05 Score=82.10 Aligned_cols=88 Identities=10% Similarity=0.222 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHh-----hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---
Q 009258 138 TDMCQRAFLEIITSEKFTLLCKVLL-----GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI--- 209 (539)
Q Consensus 138 ~~~c~~~l~~~~~s~~~~~~~~~l~-----~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~--- 209 (539)
...|..+|..+... +.+.++.... .+|..+ |.+||||+||..||.+|.| .++..|.+||++||.|+..+
T Consensus 49 ~~~~~~il~~l~~~-~~a~~F~~pV~~~~~pdY~~i-Ik~PmDL~tIk~kl~~~~Y-~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 49 SSILESIINDMRDL-PNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLY-PSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHSSS-TTCGGGSSSCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhC-CcchhhcCCCCchhcccHHHH-cCCcCCHHHHHHHhhCCCc-CCHHHHHHHHHHHHHHHHHHcCC
Confidence 45677666665544 4555555333 235555 8999999999999999988 77999999999999999887
Q ss_pred hHHHHHHHHHhhhhhHhhH
Q 009258 210 GAEIITLAKKLSELSQASY 228 (539)
Q Consensus 210 g~ev~~LA~~Ls~~s~~~~ 228 (539)
+..+...|..|.+.+...+
T Consensus 126 ~s~i~~~A~~L~~~~~~~~ 144 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKL 144 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTG
T ss_pred chHHHHHHHHHHHHHHhhh
Confidence 5678888888877755433
No 106
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.76 E-value=8.7e-06 Score=66.43 Aligned_cols=48 Identities=25% Similarity=0.717 Sum_probs=38.6
Q ss_pred ccccccccccCCCCceeeC--cCCCcCcccccCCCCCCCCC-------CCcccCCccccC
Q 009258 270 HTCRQCEEKAGEKDGLVCD--SCEEMYHLSCIEPAFKDIPP-------KSWYCARCTAKG 320 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~P~l~~~P~-------g~W~C~~C~~~~ 320 (539)
-.| +|+...+.+.|+.|| .|..+||..|+ +++..|. ..|+|+.|....
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CV--gi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHVWQHVGCV--ILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCCEEEHHHH--SCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred EEe-ECCCcCCCCCEEEECCccCCccccCEEE--ccccccccccccCCCCEECCCCCccc
Confidence 368 799986778999999 99999999999 5544432 579999998544
No 107
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=97.75 E-value=2.2e-05 Score=80.33 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=57.8
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHHhh
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEH 231 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~~~ 231 (539)
|..+ |++||||+||..||.+|.| .++..|.+||++||.|+..+ +..+...|..|...+...+.+.
T Consensus 196 Y~~i-Ik~PMDL~tI~~kl~~~~Y-~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 263 (311)
T 2r0y_A 196 YYEI-VHSPMALSIVKQNLEIGQY-SKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 263 (311)
T ss_dssp HHHH-CSSCCCHHHHHHHHHHTCC-CBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-hCCccCHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4445 8999999999999999998 78999999999999999887 6789999999999988877764
No 108
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.73 E-value=4.7e-06 Score=67.60 Aligned_cols=47 Identities=26% Similarity=0.737 Sum_probs=38.1
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCC-------CCCCcccCCccccC
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDI-------PPKSWYCARCTAKG 320 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~-------P~g~W~C~~C~~~~ 320 (539)
.| +|++..+++.|+.||.|..+||..|+ +++.. +...|+|+.|....
T Consensus 18 ~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cv--gl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 18 YC-ICRQPHNNRFMICCDRCEEWFHGDCV--GISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CS-TTCCCCCSSCEEECSSSCCEEEHHHH--SCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred EE-ECCCccCCCCEEEeCCCCCcEeCeEE--ccchhhhhhccCCCCeEECcCCcCcc
Confidence 57 79998777789999999999999999 44432 24689999998544
No 109
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.70 E-value=9.4e-06 Score=61.00 Aligned_cols=43 Identities=23% Similarity=0.674 Sum_probs=35.8
Q ss_pred ccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcc
Q 009258 274 QCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCT 317 (539)
Q Consensus 274 ~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 317 (539)
+|+...+++.|+.||.|...||..|++.....+| +.|+|+.|.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCC
Confidence 5888777789999999999999999965544455 589999996
No 110
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.69 E-value=6.2e-06 Score=64.54 Aligned_cols=48 Identities=25% Similarity=0.548 Sum_probs=36.4
Q ss_pred cccccccCC-CCCceeccCCCCcccccCCCCCCCCCC-CCCcccCCCcch
Q 009258 440 CRACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVP-KGNWFCRKCDAG 487 (539)
Q Consensus 440 C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P-~~~W~C~~C~~~ 487 (539)
|.+|++..+ ++.|+.||.|+.+||..|+........ ...|+|+.|..+
T Consensus 9 C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 445666543 678999999999999999987644333 368999999754
No 111
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.68 E-value=1.5e-05 Score=69.77 Aligned_cols=39 Identities=23% Similarity=0.555 Sum_probs=30.4
Q ss_pred CCCceeccCCCCcccccCCCCCCCCCCC----CCcccCCCcch
Q 009258 449 DEKIVMCDGCDQGYHLYCMDPPRTSVPK----GNWFCRKCDAG 487 (539)
Q Consensus 449 ~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~----~~W~C~~C~~~ 487 (539)
+..|+.|+.|+.+||..|+.++...++. ..|.|+.|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 4568999999999999999987654433 34999999753
No 112
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.67 E-value=9.2e-06 Score=61.08 Aligned_cols=42 Identities=26% Similarity=0.744 Sum_probs=34.7
Q ss_pred ccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCc
Q 009258 443 CLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCD 485 (539)
Q Consensus 443 C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~ 485 (539)
|++..+++.|+.||.|..+||..|++.+...+| +.|+|+.|.
T Consensus 9 C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~ 50 (52)
T 3o7a_A 9 CMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50 (52)
T ss_dssp TCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred eCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCC
Confidence 566666779999999999999999998654444 689999985
No 113
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=97.65 E-value=3.7e-05 Score=80.17 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=57.6
Q ss_pred cCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHHhh
Q 009258 165 FQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEH 231 (539)
Q Consensus 165 ~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~~~ 231 (539)
|..+ |.+||||+||..||.+|.| .++..|.+||++||.|+..+ +..+...|..|...+...+.+.
T Consensus 246 Y~~i-Ik~PmDL~tI~~kl~~~~Y-~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 313 (361)
T 2r10_A 246 YYEI-VHSPMALSIVKQNLEIGQY-SKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 313 (361)
T ss_dssp HHHH-CSSCCCHHHHHHHHHHTCC-CBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-hcCcccHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4445 8999999999999999998 78999999999999999887 6789999999999988877763
No 114
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.64 E-value=1.3e-05 Score=64.39 Aligned_cols=45 Identities=27% Similarity=0.661 Sum_probs=34.9
Q ss_pred cccccCC-CCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 442 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
+|++..+ +..||.||.|..+||..|+...........|+|+.|..
T Consensus 20 ~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 20 KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3666544 45799999999999999999864333457899999964
No 115
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=8.7e-06 Score=65.10 Aligned_cols=42 Identities=36% Similarity=0.850 Sum_probs=33.5
Q ss_pred ccccCCCCCceeccCCC---CcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 443 CLTDKDDEKIVMCDGCD---QGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 443 C~~~~~~~~ll~Cd~C~---~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
|++.. .+.||.||.|+ .+||+.|+.. +..|.+.|+|+.|...
T Consensus 11 C~~~~-~g~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 11 CNQVS-YGEMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTAA 55 (70)
T ss_dssp TSCCC-CSSEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHHH
T ss_pred cCCCC-CCCEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCcc
Confidence 44433 34899999986 7999999985 5678899999999753
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.63 E-value=7.8e-06 Score=61.50 Aligned_cols=48 Identities=25% Similarity=0.701 Sum_probs=36.1
Q ss_pred cccccccccCC-CCCceecc-CCCCcccccCCCCCCCCCCCCCcccCCCc
Q 009258 438 CLCRACLTDKD-DEKIVMCD-GCDQGYHLYCMDPPRTSVPKGNWFCRKCD 485 (539)
Q Consensus 438 C~C~~C~~~~~-~~~ll~Cd-~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~ 485 (539)
|.|-+|++..+ ++.|+.|| .|+.+||..|++.........+|+|+.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 45667777664 67799999 89999999999874332223789999984
No 117
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.61 E-value=1.7e-05 Score=62.99 Aligned_cols=46 Identities=26% Similarity=0.746 Sum_probs=35.3
Q ss_pred cccccccccCCCCceeeCc--CCCcCcccccCCCCCCCCC------CCcccCCcccc
Q 009258 271 TCRQCEEKAGEKDGLVCDS--CEEMYHLSCIEPAFKDIPP------KSWYCARCTAK 319 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~--C~~~~H~~Cl~P~l~~~P~------g~W~C~~C~~~ 319 (539)
.| +|+...+.+.|+.||+ |..+||..|+ +++..|. ..|||+.|+.+
T Consensus 12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv--gi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV--LIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CC-TTCCCSCCSCEEECSCTTTCEEEETTTS--CCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred Ee-ECCCCcCCCCEEEECCCCCCCeEchhhC--CCCcccccccCCCCcEECcCccCc
Confidence 46 7988777889999995 9999999999 4432221 36999999743
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.60 E-value=1e-05 Score=69.77 Aligned_cols=48 Identities=23% Similarity=0.826 Sum_probs=39.2
Q ss_pred ccccccccc-CCCCceeeC-cCCCcCcccccCCCCCC--------CCCCCcccCCccccC
Q 009258 271 TCRQCEEKA-GEKDGLVCD-SCEEMYHLSCIEPAFKD--------IPPKSWYCARCTAKG 320 (539)
Q Consensus 271 ~C~~C~~~~-~~~~ll~Cd-~C~~~~H~~Cl~P~l~~--------~P~g~W~C~~C~~~~ 320 (539)
.|.+|++.. +.+.++.|| .|..+||..|+ +|+. .|.+.|+|+.|..+.
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECT--GMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccC--CcCHHHHHhhccCCCCCEECccccCcC
Confidence 799999963 345789998 99999999999 5553 367899999998654
No 119
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.59 E-value=7.6e-06 Score=64.52 Aligned_cols=45 Identities=24% Similarity=0.872 Sum_probs=37.8
Q ss_pred ccccccccc-CCCCceeeC-cCCCcCcccccCCCCCC--------CCCCCcccCCcc
Q 009258 271 TCRQCEEKA-GEKDGLVCD-SCEEMYHLSCIEPAFKD--------IPPKSWYCARCT 317 (539)
Q Consensus 271 ~C~~C~~~~-~~~~ll~Cd-~C~~~~H~~Cl~P~l~~--------~P~g~W~C~~C~ 317 (539)
.|.+|++.. +...++.|| +|..+||..|+ +++. -|.+.|+|+.|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv--glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICT--GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH--TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhcc--CCCHHHHHHhhccCCCcEECcCcc
Confidence 799999975 455789999 99999999999 5543 377899999996
No 120
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.57 E-value=5.8e-06 Score=73.75 Aligned_cols=46 Identities=22% Similarity=0.764 Sum_probs=38.9
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCC-----CCC--CCCCcccCCCcch
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPR-----TSV--PKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl-----~~~--P~~~W~C~~C~~~ 487 (539)
.|.+| ++++.++.||.|+++||..|+.|++ .++ |.++|.|..|..+
T Consensus 59 ~C~vC---~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 59 QCRWC---AEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCTTT---CCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred cCeec---CCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 47777 5678999999999999999999974 344 8899999999764
No 121
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.52 E-value=1.3e-05 Score=60.22 Aligned_cols=46 Identities=22% Similarity=0.678 Sum_probs=35.8
Q ss_pred ccccccccccC-CCCceeeC-cCCCcCcccccCCCCCCCC--CCCcccCCcc
Q 009258 270 HTCRQCEEKAG-EKDGLVCD-SCEEMYHLSCIEPAFKDIP--PKSWYCARCT 317 (539)
Q Consensus 270 ~~C~~C~~~~~-~~~ll~Cd-~C~~~~H~~Cl~P~l~~~P--~g~W~C~~C~ 317 (539)
+.|.+|++..+ ++.++.|| .|+.+||..|+ +++..+ .+.|+|+.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cv--gl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCV--GVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTT--TCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCccccc--CCCccccCCCCEECCCCC
Confidence 46888988764 56799999 89999999999 554322 3789999984
No 122
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.49 E-value=8.8e-06 Score=70.22 Aligned_cols=49 Identities=24% Similarity=0.719 Sum_probs=36.8
Q ss_pred ccccccccC-CCCCceecc-CCCCcccccCCCCCCC------CCCCCCcccCCCcch
Q 009258 439 LCRACLTDK-DDEKIVMCD-GCDQGYHLYCMDPPRT------SVPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~-~~~~ll~Cd-~C~~~yH~~Cl~Ppl~------~~P~~~W~C~~C~~~ 487 (539)
.|.+|++.- +++.++.|| .|+.+||..|++.... ..|.+.|+|+.|..+
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 456667653 456799998 9999999999986421 136688999999754
No 123
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.46 E-value=2.6e-05 Score=63.72 Aligned_cols=49 Identities=20% Similarity=0.494 Sum_probs=36.9
Q ss_pred cccccccccC-CCCceeeCcCCCcCcccccCCCCCCC-CCCCcccCCccccC
Q 009258 271 TCRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDI-PPKSWYCARCTAKG 320 (539)
Q Consensus 271 ~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~-P~g~W~C~~C~~~~ 320 (539)
.| +|+...+ ++.|+.||.|..+||..|+....... ....|+|+.|....
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 46 8988654 67899999999999999994332222 13679999998544
No 124
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.43 E-value=1.3e-05 Score=74.97 Aligned_cols=49 Identities=22% Similarity=0.565 Sum_probs=37.9
Q ss_pred ccccccccccC-CCCceeeCcCCCcCcccccCCCCCC-CCCCCcccCCcccc
Q 009258 270 HTCRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKD-IPPKSWYCARCTAK 319 (539)
Q Consensus 270 ~~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~-~P~g~W~C~~C~~~ 319 (539)
..| +|+...+ ++.++.||.|+.+||..|+...... .+.+.|+|+.|...
T Consensus 9 ~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 9 LYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred cEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 378 9998653 6789999999999999999543222 23578999999854
No 125
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=97.37 E-value=0.00016 Score=75.33 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=66.9
Q ss_pred CcHHHHHHHHHHHHhcch-hHHHHHHH-----hhhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 136 TNTDMCQRAFLEIITSEK-FTLLCKVL-----LGNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 136 ~~~~~c~~~l~~~~~s~~-~~~~~~~l-----~~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
--...|..+|-.+..... ++-++-.+ ...|..+ |.+||||+||..|+ +.|..+++.|..||++||.|+..+
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~i-Ik~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhh-cCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 345678777766655432 12222211 1235556 99999999999998 667668999999999999999888
Q ss_pred ---hHHHHHHHHHhhhhhHhhHHh
Q 009258 210 ---GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 210 ---g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
+..+...|..|..++...+.+
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k 178 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLK 178 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 678999999999887765443
No 126
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.35 E-value=0.00043 Score=65.38 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=53.3
Q ss_pred cccCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHHhhcCCC
Q 009258 169 KVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHVGGS 235 (539)
Q Consensus 169 ~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~~~~~~~ 235 (539)
.+.+||||.+|..||.+|.| .++..|++||.+|+.|+..+ .+++......|...+...+.+....+
T Consensus 100 ~~k~PmDL~~i~kKl~~~~Y-~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 100 RQQQPLDLEGVKRKMDQGNY-TSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp CC--CCSHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hhcCCccHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCC
Confidence 36899999999999999987 88899999999999997655 47888888888888777776666554
No 127
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.30 E-value=1e-05 Score=63.72 Aligned_cols=47 Identities=26% Similarity=0.757 Sum_probs=35.9
Q ss_pred ccccccccC-CCCCceecc-CCCCcccccCCCCCCC------CCCCCCcccCCCc
Q 009258 439 LCRACLTDK-DDEKIVMCD-GCDQGYHLYCMDPPRT------SVPKGNWFCRKCD 485 (539)
Q Consensus 439 ~C~~C~~~~-~~~~ll~Cd-~C~~~yH~~Cl~Ppl~------~~P~~~W~C~~C~ 485 (539)
.|.+|++.- ++..++.|| .|..+||..|++.... .-|.+.|+|+.|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 456667653 467899999 9999999999986321 1366789999985
No 128
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.21 E-value=1.5e-05 Score=64.52 Aligned_cols=45 Identities=18% Similarity=0.636 Sum_probs=34.9
Q ss_pred cccccCCCCCceeccCCCCcccccCCCCCCCC---C--CCCCcccCCCcc
Q 009258 442 ACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTS---V--PKGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~---~--P~~~W~C~~C~~ 486 (539)
+|++..+++.||.||.|+.+||..|+...... + +...|+|+.|..
T Consensus 20 ~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 20 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 46666666789999999999999999874321 1 346899999964
No 129
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.16 E-value=7e-05 Score=60.99 Aligned_cols=45 Identities=18% Similarity=0.568 Sum_probs=34.9
Q ss_pred cccccCCCCCceecc--CCCCcccccCCCCCCCC-----CCCCCcccCCCcc
Q 009258 442 ACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRTS-----VPKGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~Ppl~~-----~P~~~W~C~~C~~ 486 (539)
+|+...+.+.|+.|| .|..+||..|+..+... .....|+|+.|..
T Consensus 20 iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 20 VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 467666678999999 99999999999875332 1135799999964
No 130
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=97.13 E-value=0.00037 Score=71.18 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHh--------hhcCCCcccCcccchhhhhhhccccccCchhhhhhhHHHHHHHH
Q 009258 135 RTNTDMCQRAFLEIITSEKFTLLCKVLL--------GNFQGIKVDRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKF 206 (539)
Q Consensus 135 ~~~~~~c~~~l~~~~~s~~~~~~~~~l~--------~~~~~~~~~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl 206 (539)
+.-...++.+|..++... ..++.... ..|..+ |++||||+||..|+ +.|..+++.|..|+++||.|+
T Consensus 27 p~~~~~~~~~L~~~~~~~--r~~~~~F~~p~~~~~~PdY~~i-Ik~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na 101 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKY--KDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNC 101 (311)
T ss_dssp TTHHHHHHHHHHHHHHHS--HHHHGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcC--CchhHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHH
Confidence 445667887887777532 22222111 235555 99999999999998 666668999999999999999
Q ss_pred HHH---hHHHHHHHHHhhhhhHhhHHh
Q 009258 207 QEI---GAEIITLAKKLSELSQASYIE 230 (539)
Q Consensus 207 ~~~---g~ev~~LA~~Ls~~s~~~~~~ 230 (539)
..+ |..+...|..|..++...+.+
T Consensus 102 ~~yN~~~s~i~~~A~~l~~~~~~~~~k 128 (311)
T 2r0y_A 102 QAYNEYDSLIVKNSMQVVMLIEFEVLK 128 (311)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 887 678888999998887655443
No 131
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.13 E-value=6.3e-05 Score=61.40 Aligned_cols=45 Identities=18% Similarity=0.514 Sum_probs=34.4
Q ss_pred cccccCC-CCCceeccCCCCcccccCCCCCCCCC-CCCCcccCCCcc
Q 009258 442 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSV-PKGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~Ppl~~~-P~~~W~C~~C~~ 486 (539)
+|++..+ ++.||.||.|+.+||..|+....... ....|+|+.|..
T Consensus 16 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 16 LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccc
Confidence 4666544 67899999999999999998643222 236899999975
No 132
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.03 E-value=0.00018 Score=58.72 Aligned_cols=52 Identities=19% Similarity=0.518 Sum_probs=39.9
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCC------------CCCCCCCCcccCCccccC
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPA------------FKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~------------l~~~P~g~W~C~~C~~~~ 320 (539)
+++.|.+|..- ..+.++.|..|.+.||..||.++ +...+..-|.|+.|.+-.
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CCcccCccccc-cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence 44589999852 26689999999999999999864 334455669999997544
No 133
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.00 E-value=0.00013 Score=59.00 Aligned_cols=46 Identities=22% Similarity=0.601 Sum_probs=34.9
Q ss_pred ccccccC-CCCceeeCcCCCcCcccccCCCCCCCCC-CCcccCCcccc
Q 009258 274 QCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDIPP-KSWYCARCTAK 319 (539)
Q Consensus 274 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-g~W~C~~C~~~ 319 (539)
+|+...+ ++.|+.||.|..+||..|+.......+. ..|+|+.|...
T Consensus 14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 7887654 6689999999999999999433333332 57999999754
No 134
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.97 E-value=0.00021 Score=56.56 Aligned_cols=45 Identities=20% Similarity=0.572 Sum_probs=33.2
Q ss_pred cccccCCCCCceecc--CCCCcccccCCCCCCCC----CCCCCcccCCCcc
Q 009258 442 ACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRTS----VPKGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~Ppl~~----~P~~~W~C~~C~~ 486 (539)
+|+...+.+.|+.|| .|..+||..|++.+... .....|+|+.|+.
T Consensus 14 ~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 14 ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 466666778999999 49999999999753211 1124799999964
No 135
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.81 E-value=0.00014 Score=58.75 Aligned_cols=45 Identities=22% Similarity=0.646 Sum_probs=34.2
Q ss_pred cccccCC-CCCceeccCCCCcccccCCCCCCCCCCC-CCcccCCCcc
Q 009258 442 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVPK-GNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~-~~W~C~~C~~ 486 (539)
+|+...+ ++.||.||.|+.+||..|+.......+. ..|+|+.|..
T Consensus 14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3455443 6789999999999999999875444333 5799999964
No 136
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.65 E-value=0.00044 Score=65.34 Aligned_cols=50 Identities=22% Similarity=0.649 Sum_probs=37.6
Q ss_pred cccccccccCCCC----ceeeCcCCCcCcccccCCCCC------CCCC-CCcccCCccccC
Q 009258 271 TCRQCEEKAGEKD----GLVCDSCEEMYHLSCIEPAFK------DIPP-KSWYCARCTAKG 320 (539)
Q Consensus 271 ~C~~C~~~~~~~~----ll~Cd~C~~~~H~~Cl~P~l~------~~P~-g~W~C~~C~~~~ 320 (539)
.|.+|++..+.++ |+.||.|+.+||..|.+..-. .+|+ ..|+|+.|....
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 6999999765543 999999999999999943311 1333 379999998654
No 137
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.49 E-value=0.00048 Score=56.24 Aligned_cols=47 Identities=23% Similarity=0.637 Sum_probs=36.9
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCC------------CCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPP------------RTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Pp------------l~~~P~~~W~C~~C~~ 486 (539)
.|.+|.... .+.++.|..|.+.||..||.++ +...+...|.|+.|..
T Consensus 17 ~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 477786554 5678999999999999999884 3445667899999953
No 138
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=96.28 E-value=0.0047 Score=56.10 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=55.9
Q ss_pred cCcccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH---hHHHHHHHHHhhhhhHhhHHhhcC
Q 009258 171 DRVFNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI---GAEIITLAKKLSELSQASYIEHVG 233 (539)
Q Consensus 171 ~~~~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~---g~ev~~LA~~Ls~~s~~~~~~~~~ 233 (539)
.+||+|.+|..|+.+|.| ++.+.|.+|+.+|++|.+.+ |+.|..=|..|..++...+.+...
T Consensus 47 k~Pi~l~~Ikkri~~~~Y-~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~ 111 (147)
T 3iu6_A 47 KPPLTFDIIRKNVENNRY-RRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCK 111 (147)
T ss_dssp SCCCCHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999 77888999999999999887 788999999999998888877654
No 139
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.19 E-value=0.00067 Score=73.32 Aligned_cols=46 Identities=22% Similarity=0.665 Sum_probs=36.4
Q ss_pred cccccccccC-CCCceeeCcCCCcCcccccCCCCCCCCC---CCcccCCcccc
Q 009258 271 TCRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDIPP---KSWYCARCTAK 319 (539)
Q Consensus 271 ~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~---g~W~C~~C~~~ 319 (539)
.| +|+...+ ++.|+.||.|+.+||..|+ +++..+. +.|+|+.|...
T Consensus 39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cv--gl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 39 YC-VCRQPYDVNRFMIECDICKDWFHGSCV--GVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp ET-TTTEECCTTSCEEEBTTTCCEEEHHHH--TCCGGGGGGEEEBCCHHHHHH
T ss_pred EE-eCCCcCCCCCCeEEccCCCCceeeeec--CcCcccccCCCEEECCCCcCC
Confidence 45 8888654 7789999999999999999 5544432 56999999854
No 140
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.29 E-value=0.0078 Score=52.21 Aligned_cols=40 Identities=25% Similarity=0.657 Sum_probs=29.7
Q ss_pred CCCceeeCcCCCcCcccccCCCCCCCCCC----CcccCCccccC
Q 009258 281 EKDGLVCDSCEEMYHLSCIEPAFKDIPPK----SWYCARCTAKG 320 (539)
Q Consensus 281 ~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g----~W~C~~C~~~~ 320 (539)
+..|+.|+.|+.+||..|+++....++.+ .|.|+.|....
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 44588999999999999998776544433 49999998543
No 141
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=94.97 E-value=0.0078 Score=65.01 Aligned_cols=38 Identities=24% Similarity=0.765 Sum_probs=29.5
Q ss_pred CCCCceeeCcCCCcCcccccCCCCCCC---CCCCcccCCcccc
Q 009258 280 GEKDGLVCDSCEEMYHLSCIEPAFKDI---PPKSWYCARCTAK 319 (539)
Q Consensus 280 ~~~~ll~Cd~C~~~~H~~Cl~P~l~~~---P~g~W~C~~C~~~ 319 (539)
.+..++.||.|+.+||..|+ +++.- +.+.|+||.|...
T Consensus 54 ~~~~mI~CD~C~~WfH~~CV--gi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCS--GLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp STTSEEECTTTCCEEEGGGT--TCCGGGTTTEEECCCTTTHHH
T ss_pred cCCCEEECCCCCcCCCCcCC--CCChhHhcCCCeEECcCCcCC
Confidence 34578999999999999999 44432 2267999999854
No 142
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=94.69 E-value=0.0028 Score=68.49 Aligned_cols=45 Identities=20% Similarity=0.522 Sum_probs=33.6
Q ss_pred cccccCC-CCCceeccCCCCcccccCCCCCCCCCC-CCCcccCCCcc
Q 009258 442 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVP-KGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P-~~~W~C~~C~~ 486 (539)
+|++..+ ++.|+.||.|+.+||..|++..-.... .+.|+|+.|..
T Consensus 41 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 41 VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 4555443 678999999999999999986433222 25799999964
No 143
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.90 E-value=0.0051 Score=65.64 Aligned_cols=46 Identities=20% Similarity=0.530 Sum_probs=35.6
Q ss_pred ccccccccC-CCCceeeCcCCCcCcccccCCCCCCCC--C-CCcccCCcccc
Q 009258 272 CRQCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKDIP--P-KSWYCARCTAK 319 (539)
Q Consensus 272 C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~~P--~-g~W~C~~C~~~ 319 (539)
..+|+...+ ++.|+.||.|..+||..|+ +++..+ . +.|+|+.|...
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CV--gi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCV--GVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHH--TCCHHHHTTEEECCCHHHHHH
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccC--CcCcccccCCCEEECCCCccc
Confidence 347887644 7789999999999999999 554332 2 57999999754
No 144
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=93.38 E-value=0.024 Score=61.20 Aligned_cols=40 Identities=30% Similarity=0.675 Sum_probs=31.3
Q ss_pred CCCCCceeccCCCCcccccCCCCCCCCC-CCCCcccCCCcc
Q 009258 447 KDDEKIVMCDGCDQGYHLYCMDPPRTSV-PKGNWFCRKCDA 486 (539)
Q Consensus 447 ~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~-P~~~W~C~~C~~ 486 (539)
..+..|+.||.|+.+||..|++..-... ..+.|+||.|..
T Consensus 53 n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 53 KNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp TSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred CcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 3467899999999999999998753322 236799999964
No 145
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.28 E-value=0.0054 Score=65.45 Aligned_cols=45 Identities=20% Similarity=0.538 Sum_probs=33.4
Q ss_pred cccccCC-CCCceeccCCCCcccccCCCCCCCCCC-CCCcccCCCcc
Q 009258 442 ACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVP-KGNWFCRKCDA 486 (539)
Q Consensus 442 ~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P-~~~W~C~~C~~ 486 (539)
+|++..+ ++.|+.||.|+.+||..|++..-...+ .+.|+|+.|..
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 3555433 688999999999999999986432222 26799999964
No 146
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=89.59 E-value=0.075 Score=46.32 Aligned_cols=35 Identities=23% Similarity=0.674 Sum_probs=27.8
Q ss_pred CceeccCCCCcccccCCCCCC------CCCCC-CCcccCCCc
Q 009258 451 KIVMCDGCDQGYHLYCMDPPR------TSVPK-GNWFCRKCD 485 (539)
Q Consensus 451 ~ll~Cd~C~~~yH~~Cl~Ppl------~~~P~-~~W~C~~C~ 485 (539)
.|+.||.|+.+||..|....- ..+|. ..|.|+.|.
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~ 42 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 42 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccc
Confidence 489999999999999987642 44553 469999996
No 147
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=87.65 E-value=0.15 Score=44.29 Aligned_cols=38 Identities=21% Similarity=0.628 Sum_probs=29.2
Q ss_pred CceeeCcCCCcCcccccCCCC------CCCCC-CCcccCCccccC
Q 009258 283 DGLVCDSCEEMYHLSCIEPAF------KDIPP-KSWYCARCTAKG 320 (539)
Q Consensus 283 ~ll~Cd~C~~~~H~~Cl~P~l------~~~P~-g~W~C~~C~~~~ 320 (539)
.|+.||.|..+||..|..-.- ..+|+ ..|.||.|....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 378999999999999985432 45564 469999998654
No 148
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=87.05 E-value=0.39 Score=44.79 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=31.7
Q ss_pred ccccCC-CCCceeccCCCCcccccCCCCCCCCC-CC---CCcccCCCcc
Q 009258 443 CLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSV-PK---GNWFCRKCDA 486 (539)
Q Consensus 443 C~~~~~-~~~ll~Cd~C~~~yH~~Cl~Ppl~~~-P~---~~W~C~~C~~ 486 (539)
|+..++ ...+|+|+.|.++||..|+..+...+ |- ....|..|..
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCC
Confidence 454444 56799999999999999998654433 32 2377999975
No 149
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=86.03 E-value=0.54 Score=43.80 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=31.7
Q ss_pred ccccccC-CCCceeeCcCCCcCcccccCCCCCC-CCCC---CcccCCccccC
Q 009258 274 QCEEKAG-EKDGLVCDSCEEMYHLSCIEPAFKD-IPPK---SWYCARCTAKG 320 (539)
Q Consensus 274 ~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~P~l~~-~P~g---~W~C~~C~~~~ 320 (539)
.||...+ .-.+|.|++|..+||..|+..+... +|.. .+.|..|...+
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 4776443 4468999999999999999755433 3322 37799997543
No 150
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=79.97 E-value=0.43 Score=43.67 Aligned_cols=49 Identities=24% Similarity=0.717 Sum_probs=37.8
Q ss_pred cccccccccccCCCCceeeC--cCCCcCcccccCCCC-----CC-CCCCCcccCCccccC
Q 009258 269 VHTCRQCEEKAGEKDGLVCD--SCEEMYHLSCIEPAF-----KD-IPPKSWYCARCTAKG 320 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~P~l-----~~-~P~g~W~C~~C~~~~ 320 (539)
...|..|+. ++++++|| .|.+.|=..|++--+ .. +....|.|--|.+..
T Consensus 79 ~~yC~wC~~---Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 79 QSYCTICCG---GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp BSSCTTTSC---CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred cceeeEecC---CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 447999987 88999999 899999999985222 11 445679999998654
No 151
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=72.08 E-value=0.84 Score=34.85 Aligned_cols=48 Identities=17% Similarity=0.410 Sum_probs=31.6
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
...|.+|...-..+..+..-.|...||..|+...+.. ...||.|+...
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 61 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDI 61 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccc
Confidence 3479999774433334444569999999999655433 23599997543
No 152
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=71.28 E-value=0.11 Score=44.94 Aligned_cols=33 Identities=15% Similarity=0.477 Sum_probs=23.3
Q ss_pred ceeccCCCCcccccCCCCCCCCCCCCCcccCCCcchh
Q 009258 452 IVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAGI 488 (539)
Q Consensus 452 ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~~ 488 (539)
......|+..||..|+.+-+.. ...||.|+...
T Consensus 91 ~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 123 (133)
T 4ap4_A 91 LIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 123 (133)
T ss_dssp CEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred ceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcC
Confidence 3456678999999999864432 24899998643
No 153
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=69.75 E-value=0.53 Score=35.87 Aligned_cols=48 Identities=25% Similarity=0.465 Sum_probs=31.7
Q ss_pred cccccccccccCCCCceee--CcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 269 VHTCRQCEEKAGEKDGLVC--DSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
...|.+|....++..++-| .+..+.||..|+..-+.. .+++.|+-|..
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~ 55 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGV 55 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCC
Confidence 3479999875444444554 344559999999766532 24588888864
No 154
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=69.39 E-value=2.7 Score=30.29 Aligned_cols=45 Identities=16% Similarity=0.464 Sum_probs=30.8
Q ss_pred ccccccccccCC-CCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 270 HTCRQCEEKAGE-KDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 270 ~~C~~C~~~~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
..|.+|...-.. +....-..|...||..|+..-+.. ...||.|+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~ 51 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCC
Confidence 369999874333 334444469999999999766543 357998874
No 155
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.21 E-value=1.6 Score=33.98 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=32.1
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
...|.+|...-..+..+..-.|...||..|+..-+.. ...||.|+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 4479999875444444444569999999999655432 2469988743
No 156
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=64.99 E-value=1.1 Score=46.66 Aligned_cols=49 Identities=20% Similarity=0.634 Sum_probs=37.2
Q ss_pred cccccccccccCCCCceeeC--cCCCcCcccccCCCC-----CC-CCCCCcccCCccccC
Q 009258 269 VHTCRQCEEKAGEKDGLVCD--SCEEMYHLSCIEPAF-----KD-IPPKSWYCARCTAKG 320 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~P~l-----~~-~P~g~W~C~~C~~~~ 320 (539)
+..|+.|+. ++++++|| .|.+.|-..|++--+ .. .....|.|--|..+.
T Consensus 93 ~~yCr~C~~---Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 93 QSYCSICCS---GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp BCSCTTTCC---CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cccceEcCC---CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 447999987 88999999 999999999985222 11 223569999998654
No 157
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.24 E-value=1.7 Score=35.01 Aligned_cols=48 Identities=21% Similarity=0.521 Sum_probs=30.1
Q ss_pred ccccccccccC-CCCce-ee--CcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 270 HTCRQCEEKAG-EKDGL-VC--DSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 270 ~~C~~C~~~~~-~~~ll-~C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
..|.+|....+ ++.++ -| .+....||..|+..-+..- +...||-|...
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~ 67 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYE 67 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCB
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCe
Confidence 37999986433 33333 12 2335899999997665431 34689988744
No 158
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=60.98 E-value=2.8 Score=30.16 Aligned_cols=44 Identities=30% Similarity=0.640 Sum_probs=28.5
Q ss_pred cccccccCCC-CCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 440 CRACLTDKDD-EKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 440 C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
|.+|...-.. +....-..|+..||..|+..-+.. ...||.|+..
T Consensus 8 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp CTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 5566544332 334444569999999999765433 3579999753
No 159
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.22 E-value=3.7 Score=32.94 Aligned_cols=35 Identities=29% Similarity=0.793 Sum_probs=23.5
Q ss_pred CccccccCcccccCCCcccccCCcccC--CccccccccCc
Q 009258 386 ANLCKICGRKVEESSDKFRSCEHAFCY--SKFYHERCLTP 423 (539)
Q Consensus 386 ~~~C~iCgs~~~~~~~~ll~C~~~~C~--~k~yH~~Cl~~ 423 (539)
...|.||......++..++.|. |. ..+||..||..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~---C~Gs~h~fH~~Cl~~ 51 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCH---CTGSLHFVHQACLQQ 51 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSS---CCSSSCCEETTHHHH
T ss_pred CCCCeEcCccccCCCeeEeccc---cCCcCCeeCHHHHHH
Confidence 4689999876554233344454 43 37899999984
No 160
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=59.85 E-value=4.5 Score=33.13 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=31.3
Q ss_pred CCccccCccccccCcccccCCCcccccCCcccCCccccccccCc
Q 009258 380 VDSRESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP 423 (539)
Q Consensus 380 v~~~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~ 423 (539)
|+..++...|.+|+... .+..+.|....| ...||+.|...
T Consensus 11 Ip~~R~~l~C~iC~~~~---~GAciqC~~~~C-~~~fHv~CA~~ 50 (87)
T 2lq6_A 11 IPPARWKLTCYLCKQKG---VGASIQCHKANC-YTAFHVTCAQK 50 (87)
T ss_dssp CCCCCCCCCBTTTTBCC---SSCEEECSCTTT-CCEEEHHHHHH
T ss_pred CChHHhcCCCcCCCCCC---CcEeEecCCCCC-CCcCcHHHHHH
Confidence 44466778999998642 367899998889 78999999754
No 161
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.61 E-value=3.9 Score=32.48 Aligned_cols=28 Identities=21% Similarity=0.544 Sum_probs=21.2
Q ss_pred CcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 288 DSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 288 d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
-.|.-.||..|+..-+..- -.||.|+..
T Consensus 46 ~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 73 (81)
T 2ecl_A 46 GECNHSFHNCCMSLWVKQN----NRCPLCQQD 73 (81)
T ss_dssp ETTSCEEEHHHHHHHTTTC----CBCTTTCCB
T ss_pred CCCCCccChHHHHHHHHhC----CCCCCcCCC
Confidence 3699999999997766543 279998743
No 162
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=56.82 E-value=5.4 Score=30.91 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=30.9
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
...|.+|...-.....+.--.|...||..|+...+.. ...||.|+...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCcc
Confidence 3479999874433333333358889999999655432 24788887543
No 163
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=56.33 E-value=9.8 Score=25.30 Aligned_cols=26 Identities=19% Similarity=0.831 Sum_probs=16.6
Q ss_pred CCCCcccCCccccCCCCCCcccccccc
Q 009258 307 PPKSWYCARCTAKGFGSPHENCIVCER 333 (539)
Q Consensus 307 P~g~W~C~~C~~~~~~~~~~~C~vC~~ 333 (539)
..|+|.|+.|..... .....|..|..
T Consensus 3 ~~gDW~C~~C~~~Nf-a~R~~C~~C~~ 28 (33)
T 2k1p_A 3 SANDWQCKTCSNVNW-ARRSECNMCNT 28 (33)
T ss_dssp SSSSCBCSSSCCBCC-TTCSBCSSSCC
T ss_pred CCCCcccCCCCCccc-cccccccccCC
Confidence 468999999975442 23345666654
No 164
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=55.84 E-value=2.8 Score=34.06 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=31.9
Q ss_pred CcccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 268 KVHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 268 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
.+..|.+|...-..+..+.--.|...||..|+...+.. .-.||.|+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 34479999875434443333459999999999765543 2378888743
No 165
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=55.07 E-value=2.7 Score=30.18 Aligned_cols=45 Identities=22% Similarity=0.515 Sum_probs=30.6
Q ss_pred cccccccccc-CCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 270 HTCRQCEEKA-GEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 270 ~~C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
..|.+|...- +++.....-.|...||..|+..-+..- ..||.|+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~ 51 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSG 51 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCC
Confidence 4799998743 333445566799999999996444322 56888874
No 166
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=52.32 E-value=4.2 Score=26.72 Aligned_cols=15 Identities=27% Similarity=0.935 Sum_probs=11.7
Q ss_pred CCCCCcccCCccccC
Q 009258 306 IPPKSWYCARCTAKG 320 (539)
Q Consensus 306 ~P~g~W~C~~C~~~~ 320 (539)
..+|+|.|..|...+
T Consensus 14 pregdwcchkcvpeg 28 (36)
T 4b2u_A 14 PREGDWCCHKCVPEG 28 (36)
T ss_dssp GGGCCSSSSEEEEET
T ss_pred CCccCeeeecccccC
Confidence 345899999998655
No 167
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.48 E-value=6.9 Score=31.02 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=32.0
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
..|.+|...-.. -+.|..|...||..|+..-+.... .=.||.|..
T Consensus 16 ~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~ 60 (74)
T 2ct0_A 16 KICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCND 60 (74)
T ss_dssp CBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCS
T ss_pred CcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcC
Confidence 369999874433 357889999999999976664432 246888864
No 168
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=48.22 E-value=4.6 Score=31.32 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=26.6
Q ss_pred cccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 440 CRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 440 C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
|.+|...-.....+.--.|...||..|+..-+.. ...||.|+..
T Consensus 18 C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 61 (78)
T 2ect_A 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKS 61 (78)
T ss_dssp CTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCC
T ss_pred CeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCc
Confidence 5555543332223323358999999999754322 2489999864
No 169
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=47.05 E-value=1.6 Score=33.26 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=27.5
Q ss_pred cccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcchh
Q 009258 440 CRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAGI 488 (539)
Q Consensus 440 C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~~ 488 (539)
|.+|...-..+..+..-.|+..||..|+..-+.. ...||.|+..+
T Consensus 17 C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 61 (69)
T 2kiz_A 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDI 61 (69)
T ss_dssp BTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBS
T ss_pred CeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccc
Confidence 5566543333333444569999999999753322 23599998643
No 170
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.94 E-value=1.4 Score=34.31 Aligned_cols=45 Identities=27% Similarity=0.641 Sum_probs=29.0
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
.|.+|...-..+..+..-.|...||..|+..-+.. ...||.|+..
T Consensus 25 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp EETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 36666654444444445569999999999763322 2479999754
No 171
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=45.91 E-value=4 Score=34.19 Aligned_cols=33 Identities=21% Similarity=0.538 Sum_probs=22.3
Q ss_pred eCcCCCcCcccccCCCCCCC-CCCCcccCCcccc
Q 009258 287 CDSCEEMYHLSCIEPAFKDI-PPKSWYCARCTAK 319 (539)
Q Consensus 287 Cd~C~~~~H~~Cl~P~l~~~-P~g~W~C~~C~~~ 319 (539)
--.|...||..|+..-+..- +...-.||.|+..
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 45689999999997655221 1345678888743
No 172
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=45.87 E-value=13 Score=30.21 Aligned_cols=74 Identities=19% Similarity=0.484 Sum_probs=38.3
Q ss_pred CccccccCcccccCCCcccccCCcccCCccccccccCcc----ccc-----CCCCcccCccc-------ccccccccCCC
Q 009258 386 ANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPK----QLK-----RYGPCWFCPSC-------LCRACLTDKDD 449 (539)
Q Consensus 386 ~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~~----~~~-----~~~~~W~Cp~C-------~C~~C~~~~~~ 449 (539)
...|..|+.+... ++..+.-. ++.||..|..=. ++. ......+|..| .|..|++.-..
T Consensus 5 ~~~C~~C~~~I~~-~~~~~~a~-----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 5 SSGCVECRKPIGA-DSKEVHYK-----NRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCBCSSSCCBCCS-SSCEEEET-----TEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCS
T ss_pred CCcCcccCCcccC-CceEEEEC-----ccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcccc
Confidence 4678999988753 23333222 677888877531 111 12344566555 26666544322
Q ss_pred -CCceeccCCCCcccccCC
Q 009258 450 -EKIVMCDGCDQGYHLYCM 467 (539)
Q Consensus 450 -~~ll~Cd~C~~~yH~~Cl 467 (539)
+..+ ..=+..||..|.
T Consensus 79 ~~~~~--~a~~~~~H~~CF 95 (101)
T 2cup_A 79 GDQNV--EYKGTVWHKDCF 95 (101)
T ss_dssp SSCEE--ESSSCEEETTTC
T ss_pred CCeEE--EeCCcchHHhCC
Confidence 2222 233566776664
No 173
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.13 E-value=3.4 Score=31.76 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=30.1
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
..|.+|...-..+..+.--.|...||..|+...+..- ..||.|+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~ 62 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPV 62 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccc
Confidence 3799998754333333222589899999996544322 3799887543
No 174
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.81 E-value=25 Score=25.46 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=17.4
Q ss_pred CccccccCcccccCCCcccccCCccc
Q 009258 386 ANLCKICGRKVEESSDKFRSCEHAFC 411 (539)
Q Consensus 386 ~~~C~iCgs~~~~~~~~ll~C~~~~C 411 (539)
...|.+|..... ....+.|.|.||
T Consensus 6 ~~~C~IC~~~~~--~p~~l~CgH~fC 29 (56)
T 1bor_A 6 FLRCQQCQAEAK--CPKLLPCLHTLC 29 (56)
T ss_dssp CSSCSSSCSSCB--CCSCSTTSCCSB
T ss_pred CCCceEeCCccC--CeEEcCCCCccc
Confidence 457999988655 456778888666
No 175
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.67 E-value=5.5 Score=29.53 Aligned_cols=44 Identities=18% Similarity=0.411 Sum_probs=26.5
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCc
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARC 316 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C 316 (539)
...|.+|...-... .+. .|...||..|+..-+.. ..+...||.|
T Consensus 20 ~~~C~IC~~~~~~p-~~~--~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKP-VTI--DCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSC-EEC--TTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred CCCCCcCCchhCCe-EEe--CCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 44799998743322 222 78888888888644432 1234567665
No 176
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=42.58 E-value=4.1 Score=34.13 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=23.7
Q ss_pred ceeccCCCCcccccCCCCCCCCC-CCCCcccCCCcch
Q 009258 452 IVMCDGCDQGYHLYCMDPPRTSV-PKGNWFCRKCDAG 487 (539)
Q Consensus 452 ll~Cd~C~~~yH~~Cl~Ppl~~~-P~~~W~C~~C~~~ 487 (539)
.+.-..|...||..|+..-+... ....-.||.|+..
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 33356799999999998633211 1234589999854
No 177
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=42.37 E-value=7.5 Score=39.99 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=24.3
Q ss_pred Cceecc--CCCCcccccCCCCCCCCCCC-------CCcccCCCcchh
Q 009258 451 KIVMCD--GCDQGYHLYCMDPPRTSVPK-------GNWFCRKCDAGI 488 (539)
Q Consensus 451 ~ll~Cd--~C~~~yH~~Cl~Ppl~~~P~-------~~W~C~~C~~~~ 488 (539)
....|+ .|...||..|+..=+.+.+. -.=.||-|+..+
T Consensus 325 Pdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 325 PLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred ccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 345687 89999999999762211111 113599998643
No 178
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=42.16 E-value=8.3 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.832 Sum_probs=15.8
Q ss_pred CCCcccCCccccCCCCCCcccccccc
Q 009258 308 PKSWYCARCTAKGFGSPHENCIVCER 333 (539)
Q Consensus 308 ~g~W~C~~C~~~~~~~~~~~C~vC~~ 333 (539)
.|+|.|+.|..... .....|+.|+.
T Consensus 3 ~gDW~C~~C~~~Nf-a~r~~C~~C~~ 27 (32)
T 2lk0_A 3 FEDWLCNKCCLNNF-RKRLKCFRCGA 27 (32)
T ss_dssp CSEEECTTTCCEEE-TTCCBCTTTCC
T ss_pred CCCCCcCcCcCCcC-hhcceecCCCC
Confidence 38999999975432 12345666654
No 179
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=41.59 E-value=2.5 Score=34.32 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=27.9
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
.|.+|...-..+..+..-.|+..||..|+..-+.. .-.||.|+..
T Consensus 42 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp EETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred CCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 35666544333333333459999999999764322 2389999864
No 180
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.51 E-value=10 Score=28.68 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=30.4
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
...|.+|...-... .+. .|...||..|+..-+.. ..+...||.|...
T Consensus 20 ~~~C~IC~~~~~~~-~~~--~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQKP-VTI--DCGHNFCLKCITQIGET-SCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSSE-EEC--TTCCEEEHHHHHHHCSS-SCSCCCCSSSCCC
T ss_pred CCEeccCCcccCCe-EEc--CCCChhhHHHHHHHHHc-CCCCCCCCCCCCc
Confidence 34799998743322 222 78988999998655432 2345689988754
No 181
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=41.10 E-value=24 Score=26.94 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=31.1
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCC---CCCCcccCCcccc
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDI---PPKSWYCARCTAK 319 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~---P~g~W~C~~C~~~ 319 (539)
..|.+|...-....++ .|...|+..|+..-+... ..+...||.|...
T Consensus 13 ~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 13 VTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62 (79)
T ss_dssp CEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC
T ss_pred CCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCc
Confidence 4799998754333333 688899999997655432 1235788888743
No 182
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.82 E-value=5.5 Score=31.55 Aligned_cols=44 Identities=20% Similarity=0.563 Sum_probs=28.0
Q ss_pred cccccccCC-CCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 440 CRACLTDKD-DEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 440 C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
|.+|..... ++..+.-..|...||..|+..=+... -.||-|+..
T Consensus 29 C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 73 (81)
T 2ecl_A 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQD 73 (81)
T ss_dssp CTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCB
T ss_pred CcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCC
Confidence 555554332 23344444799999999998744332 289999854
No 183
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=39.36 E-value=4.6 Score=42.03 Aligned_cols=46 Identities=26% Similarity=0.757 Sum_probs=33.9
Q ss_pred ccccccccCCCCCceecc--CCCCcccccCCCCCCC-----C-CCCCCcccCCCcch
Q 009258 439 LCRACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRT-----S-VPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~Ppl~-----~-~P~~~W~C~~C~~~ 487 (539)
.|..|+ +++.++.|| .|.+.|=..|+.--+. . ....+|.|--|..+
T Consensus 95 yCr~C~---~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 95 YCSICC---SGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SCTTTC---CCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cceEcC---CCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 577774 567899999 9999999999865331 1 22357999999743
No 184
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=38.87 E-value=4.7 Score=36.79 Aligned_cols=46 Identities=22% Similarity=0.701 Sum_probs=34.6
Q ss_pred ccccccccCCCCCceecc--CCCCcccccCCCCCCCC------CCCCCcccCCCcch
Q 009258 439 LCRACLTDKDDEKIVMCD--GCDQGYHLYCMDPPRTS------VPKGNWFCRKCDAG 487 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~Ppl~~------~P~~~W~C~~C~~~ 487 (539)
.|..|+ +++.++.|+ .|.+.|=..|+.--+.. ....+|.|--|...
T Consensus 81 yC~wC~---~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 81 YCTICC---GGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SCTTTS---CCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred eeeEec---CCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 577774 567999999 89999999997642221 34568999999753
No 185
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.65 E-value=15 Score=26.39 Aligned_cols=44 Identities=23% Similarity=0.565 Sum_probs=27.9
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCc
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARC 316 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C 316 (539)
...|.+|...-....++ .|...||..|+...+... .+...||.|
T Consensus 15 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVII---ECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCC---SSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred CCCCccCCcccCccEeC---CCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 34799998754443333 588889999986554332 234567765
No 186
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.22 E-value=7.4 Score=30.82 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=28.8
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|...-. .-+.|..|...||..|+..=+... ..-.||.|+.
T Consensus 17 ~C~IC~~~i~--~g~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~ 60 (74)
T 2ct0_A 17 ICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCND 60 (74)
T ss_dssp BCSSSCCBCS--SSEECSSSCCEECHHHHHHHSTTC--SSCCCTTTCS
T ss_pred cCcchhhHcc--cCCccCCCCchhhHHHHHHHHHhc--CCCCCCCCcC
Confidence 3566654332 235688999999999998544322 2247999974
No 187
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.32 E-value=12 Score=27.83 Aligned_cols=44 Identities=18% Similarity=0.456 Sum_probs=29.6
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
..|.+|...-....++ .|...||..|+...+. .+...||.|...
T Consensus 16 ~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQT---ECGHRFCESCMAALLS---SSSPKCTACQES 59 (66)
T ss_dssp EECTTTCCEESSCCCC---SSSCCCCHHHHHHHHT---TSSCCCTTTCCC
T ss_pred CCCCCCChHhcCeeEC---CCCCHHHHHHHHHHHH---hCcCCCCCCCcC
Confidence 4799998744333332 7888899999965553 345678888743
No 188
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.60 E-value=9.6 Score=29.58 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=29.9
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCCC--CCCCcccCCcccc
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDI--PPKSWYCARCTAK 319 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~--P~g~W~C~~C~~~ 319 (539)
...|.+|...-....++ .|...||..|+..-+... ..+...||.|...
T Consensus 19 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSA---DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp TTSCTTTCSCCSSCEEC---TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred CCCCcCCChhhCcceeC---CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 34799998743222222 588889999986433221 2346889988743
No 189
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.78 E-value=12 Score=29.08 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=29.1
Q ss_pred cccccccccccCCCCceeeCcCCCcCcccccCCCCCC--CCCCCcccCCcccc
Q 009258 269 VHTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKD--IPPKSWYCARCTAK 319 (539)
Q Consensus 269 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~--~P~g~W~C~~C~~~ 319 (539)
...|.+|...-....++ .|...||..|+..-+.. ...+...||.|...
T Consensus 19 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSL---DCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68 (85)
T ss_dssp CCCCTTTCSCCSSCBCC---SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCS
T ss_pred CCCCCCCCcccCCceeC---CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCc
Confidence 34799998743332222 68888888888543322 12345778888743
No 190
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=33.29 E-value=25 Score=27.70 Aligned_cols=27 Identities=22% Similarity=0.531 Sum_probs=17.7
Q ss_pred cCccccccCcccccCCCcccc--cCCccc
Q 009258 385 SANLCKICGRKVEESSDKFRS--CEHAFC 411 (539)
Q Consensus 385 ~~~~C~iCgs~~~~~~~~ll~--C~~~~C 411 (539)
....|+||..+....+..++. |+|.||
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC 38 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQIC 38 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCC
T ss_pred cCCcCCccCccCccccccccccCCCCCcC
Confidence 346899999976543344444 777666
No 191
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.23 E-value=1.5e+02 Score=22.94 Aligned_cols=33 Identities=21% Similarity=0.762 Sum_probs=18.9
Q ss_pred cccCccccccCcccccCCCcccccCCcccCCccccccccC
Q 009258 383 RESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLT 422 (539)
Q Consensus 383 ~~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~ 422 (539)
......|..|+..... .+.+ .-. ++.||..|..
T Consensus 12 ~~~~~~C~~C~~~I~~-~e~v-~a~-----~~~wH~~CF~ 44 (82)
T 2co8_A 12 AGAGDLCALCGEHLYV-LERL-CVN-----GHFFHRSCFR 44 (82)
T ss_dssp CCSSCBCSSSCCBCCT-TTBC-CBT-----TBCCBTTTCB
T ss_pred CCCCCCCcccCCCccc-ceEE-EEC-----CCeeCCCcCE
Confidence 3345789999988643 2222 211 5677775543
No 192
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.46 E-value=26 Score=28.54 Aligned_cols=34 Identities=24% Similarity=0.689 Sum_probs=26.2
Q ss_pred CCceeeCcCC-CcCcccccCCCCCCCCCCCcccCCccc
Q 009258 282 KDGLVCDSCE-EMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 282 ~~ll~Cd~C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
=.|++|..|. ..-|..|. .+.. ...+|.|..|..
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs--~l~~-~~~~weC~~C~~ 78 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCS--SLRP-NSKKWECNECLP 78 (85)
T ss_dssp TBCEECSSSCCCEECSGGG--TCCT-TCSCCCCTTTSC
T ss_pred EEEEeCcccCCchhHHHHh--CCcC-CCCCEECCcCcc
Confidence 3689999996 67899999 4533 345799999984
No 193
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=31.96 E-value=15 Score=37.74 Aligned_cols=48 Identities=27% Similarity=0.505 Sum_probs=31.1
Q ss_pred cccccccccCC-CC--ceeeC--cCCCcCcccccCCCCCCCCCC-------CcccCCccc
Q 009258 271 TCRQCEEKAGE-KD--GLVCD--SCEEMYHLSCIEPAFKDIPPK-------SWYCARCTA 318 (539)
Q Consensus 271 ~C~~C~~~~~~-~~--ll~Cd--~C~~~~H~~Cl~P~l~~~P~g-------~W~C~~C~~ 318 (539)
.|.+|-..-.. +. ...|+ .|...||..|+...+.+.+.+ ---||.|+.
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~ 369 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCC
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCC
Confidence 69999763322 33 35788 899999999996554433321 134887764
No 194
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.77 E-value=22 Score=25.56 Aligned_cols=33 Identities=27% Similarity=0.757 Sum_probs=17.1
Q ss_pred eccCCCCcccccCCCC-CCCCCCCCCcccCCCcch
Q 009258 454 MCDGCDQGYHLYCMDP-PRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 454 ~Cd~C~~~yH~~Cl~P-pl~~~P~~~W~C~~C~~~ 487 (539)
.|..|+..|...=-+| +...+| .+|.||.|...
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP-~dw~CP~Cg~~ 39 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLP-DDWCCPVCGVS 39 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSC-TTCBCTTTCCB
T ss_pred ECCCCCeEEeCCcCCCcchhhCC-CCCcCcCCCCc
Confidence 3455554443322221 223444 45999999753
No 195
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=31.40 E-value=12 Score=31.43 Aligned_cols=28 Identities=21% Similarity=0.524 Sum_probs=21.5
Q ss_pred CcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 288 DSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 288 d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
-.|...||..|+.+-+.. .-.||.|+..
T Consensus 71 ~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 71 GVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp ETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred cccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 479999999999776654 3569999754
No 196
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=30.75 E-value=11 Score=32.40 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=0.0
Q ss_pred cCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 289 SCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 289 ~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
.|.-.||..|+.+-+.. .-.||.|+..
T Consensus 83 ~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKT----RQVCPLDNRE 109 (117)
T ss_dssp -------------------------------
T ss_pred CcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence 68999999999877654 2469988743
No 197
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.74 E-value=46 Score=23.97 Aligned_cols=41 Identities=27% Similarity=0.540 Sum_probs=25.9
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccccC
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAKG 320 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 320 (539)
-.|.+|...-....++ .|...|+..|+.. ....||.|+...
T Consensus 7 ~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~-------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 7 LRCQQCQAEAKCPKLL---PCLHTLCSGCLEA-------SGMQCPICQAPW 47 (56)
T ss_dssp SSCSSSCSSCBCCSCS---TTSCCSBTTTCSS-------SSSSCSSCCSSS
T ss_pred CCceEeCCccCCeEEc---CCCCcccHHHHcc-------CCCCCCcCCcEe
Confidence 3699998744333333 4777777788743 345788887543
No 198
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.44 E-value=31 Score=28.11 Aligned_cols=34 Identities=24% Similarity=0.696 Sum_probs=26.5
Q ss_pred CCceeccCCCC-cccccCCCCCCCCCCCCCcccCCCcc
Q 009258 450 EKIVMCDGCDQ-GYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 450 ~~ll~Cd~C~~-~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
=.|+.|..|.. .-|..|... +.....|.|..|..
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l---~~~~~~weC~~C~~ 78 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSL---RPNSKKWECNECLP 78 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTC---CTTCSCCCCTTTSC
T ss_pred EEEEeCcccCCchhHHHHhCC---cCCCCCEECCcCcc
Confidence 35888999987 789999873 23456799999974
No 199
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.22 E-value=38 Score=24.44 Aligned_cols=31 Identities=26% Similarity=0.693 Sum_probs=22.2
Q ss_pred CCCCCCcccCCccccCCCCCCcccccccccCC
Q 009258 305 DIPPKSWYCARCTAKGFGSPHENCIVCERMNA 336 (539)
Q Consensus 305 ~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~~ 336 (539)
..+.|.|-|..|..... .....|+.|+..+.
T Consensus 6 k~~~gsW~C~~C~v~N~-a~~~kC~aC~~pkp 36 (47)
T 2ebr_A 6 SGPEGSWDCELCLVQNK-ADSTKCLACESAKP 36 (47)
T ss_dssp SSCCSSCCCSSSCCCCC-SSCSBCSSSCCBCC
T ss_pred cCCCCeeECCeeecCCc-CCcceecCcCCCCC
Confidence 45779999999976552 34567888885544
No 200
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=29.71 E-value=16 Score=29.75 Aligned_cols=28 Identities=29% Similarity=0.869 Sum_probs=22.8
Q ss_pred cccccccccCCCCceeeC--cCCCcCccccc
Q 009258 271 TCRQCEEKAGEKDGLVCD--SCEEMYHLSCI 299 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl 299 (539)
.|.+|+... .|..+.|. .|..+||..|.
T Consensus 19 ~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 19 TCYLCKQKG-VGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CBTTTTBCC-SSCEEECSCTTTCCEEEHHHH
T ss_pred CCcCCCCCC-CcEeEecCCCCCCCcCcHHHH
Confidence 799997632 46788887 59999999997
No 201
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=29.58 E-value=29 Score=31.16 Aligned_cols=93 Identities=19% Similarity=0.409 Sum_probs=51.0
Q ss_pred CccccccCcccccCCCcccccCCcccCCccccccccCcc----cc----cCCCCcccCccc-------ccccccccCCCC
Q 009258 386 ANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPK----QL----KRYGPCWFCPSC-------LCRACLTDKDDE 450 (539)
Q Consensus 386 ~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~~----~~----~~~~~~W~Cp~C-------~C~~C~~~~~~~ 450 (539)
...|..|+.+... ..++.-. ++.||..|..=. .+ -......+|..| .|..|++.-.+.
T Consensus 6 ~~~C~~C~~~I~~--~~~~~a~-----~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 6 IPMCAGCDQHILD--RFILKAL-----DRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPT 78 (169)
T ss_dssp -CBBSSSSSBCCS--SSCEECS-----SCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTT
T ss_pred CCccccCCCccCC--cEEEEEC-----CcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCC
Confidence 4689999988753 2222221 677888777431 11 123456788776 388887643333
Q ss_pred CceeccCCCCcccccCCC-----CCCC------CCCCCCcccCCCcc
Q 009258 451 KIVMCDGCDQGYHLYCMD-----PPRT------SVPKGNWFCRKCDA 486 (539)
Q Consensus 451 ~ll~Cd~C~~~yH~~Cl~-----Ppl~------~~P~~~W~C~~C~~ 486 (539)
.++. ..-+..||..|.. -+|. .+..+..+|..|..
T Consensus 79 ~~v~-~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~ 124 (169)
T 2rgt_A 79 QVVR-RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124 (169)
T ss_dssp SEEE-EETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHH
T ss_pred cEEE-EcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHH
Confidence 2221 2346678877632 1221 12345688888864
No 202
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=28.93 E-value=25 Score=29.33 Aligned_cols=30 Identities=17% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCCCcccccCCCCCCCCCCCCCcccCCCcchhH
Q 009258 457 GCDQGYHLYCMDPPRTSVPKGNWFCRKCDAGIQ 489 (539)
Q Consensus 457 ~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~~~ 489 (539)
.|++.|+..|+..-+. .+...||.|+....
T Consensus 32 ~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVE---KASLCCPFCRRRVS 61 (115)
T ss_dssp TTSCEECHHHHCCCCC---TTTSBCTTTCCBCH
T ss_pred CCCCHHhHHHHHHHHh---HCcCCCCCCCcccC
Confidence 6999999999986443 34578999987654
No 203
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=28.34 E-value=31 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=23.0
Q ss_pred CCCCcccccCCCCCCCCC---CCCCcccCCCcchh
Q 009258 457 GCDQGYHLYCMDPPRTSV---PKGNWFCRKCDAGI 488 (539)
Q Consensus 457 ~C~~~yH~~Cl~Ppl~~~---P~~~W~C~~C~~~~ 488 (539)
.|++.|+..|+..-+... ..+.-.||.|+...
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 699999999998654432 12357899998654
No 204
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=28.06 E-value=19 Score=34.80 Aligned_cols=44 Identities=25% Similarity=0.671 Sum_probs=31.8
Q ss_pred cccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 271 TCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 271 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
.|.+|....-. -..|..|...||..|+.--+.. .+.-.||.|..
T Consensus 182 ~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~~ 225 (238)
T 3nw0_A 182 ICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCND 225 (238)
T ss_dssp BCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTT--CSSCBCTTTCC
T ss_pred cCcchhhHHhC--CcccCccChHHHHHHHHHHHHh--CCCCCCCCCCC
Confidence 69999885443 3779899999999999544433 23457888863
No 205
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.41 E-value=18 Score=27.41 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=27.9
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
..|.+|...-....++ .|...||..|+...+.. ...||.|+..
T Consensus 16 ~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 58 (71)
T 2d8t_A 16 PECAICLQTCVHPVSL---PCKHVFCYLCVKGASWL----GKRCALCRQE 58 (71)
T ss_dssp CBCSSSSSBCSSEEEE---TTTEEEEHHHHHHCTTC----SSBCSSSCCB
T ss_pred CCCccCCcccCCCEEc---cCCCHHHHHHHHHHHHC----CCcCcCcCch
Confidence 3799998743222222 58888999998654432 2679988744
No 206
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.02 E-value=40 Score=24.35 Aligned_cols=32 Identities=19% Similarity=0.510 Sum_probs=23.0
Q ss_pred CCCCCCCcccCCccccCCCCCCcccccccccCC
Q 009258 304 KDIPPKSWYCARCTAKGFGSPHENCIVCERMNA 336 (539)
Q Consensus 304 ~~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~~ 336 (539)
...+.|.|-|..|..... .....|+.|+..+.
T Consensus 5 ~~~~~g~W~C~~C~v~N~-a~~~kC~aCetpKp 36 (47)
T 2ebq_A 5 SSGVIGTWDCDTCLVQNK-PEAIKCVACETPKP 36 (47)
T ss_dssp CCCCSSSEECSSSCCEEC-SSCSBCSSSCCBCS
T ss_pred cCCCCCceECCeeeccCc-cCCceecCcCCCCC
Confidence 356779999999976542 34568999986554
No 207
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=26.02 E-value=29 Score=31.53 Aligned_cols=75 Identities=23% Similarity=0.501 Sum_probs=41.9
Q ss_pred cCccccccCcccccCCCcccccCCcccCCccccccccCcc----ccc----CCCCcccCccc-------ccccccccCCC
Q 009258 385 SANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTPK----QLK----RYGPCWFCPSC-------LCRACLTDKDD 449 (539)
Q Consensus 385 ~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~~----~~~----~~~~~W~Cp~C-------~C~~C~~~~~~ 449 (539)
....|..|+.+... ...+.-. ++.||..|..=. .+. ......+|..| .|..|++.-.+
T Consensus 59 ~~~~C~~C~~~I~~--~~~~~a~-----~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 59 EIPMCAGCDQHILD--RFILKAL-----DRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPP 131 (182)
T ss_dssp SCCBCBTSSSBCCC--SEEEEET-----TEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCS
T ss_pred CCCcCccCCCCccC--ceeEEec-----CCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCC
Confidence 35789999998753 2222222 677888877531 111 22355778666 37788764332
Q ss_pred CCceeccCCCCcccccCC
Q 009258 450 EKIVMCDGCDQGYHLYCM 467 (539)
Q Consensus 450 ~~ll~Cd~C~~~yH~~Cl 467 (539)
..++. ..-+..||..|.
T Consensus 132 ~~~v~-~a~~~~~H~~CF 148 (182)
T 2jtn_A 132 TQVVR-RAQDFVYHLHCF 148 (182)
T ss_dssp SCCCC-EETTEECCTTTC
T ss_pred CceEE-ecCCCCEEeCCC
Confidence 22211 234567887764
No 208
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.53 E-value=1.1e+02 Score=23.49 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=8.5
Q ss_pred CccccccCcccc
Q 009258 386 ANLCKICGRKVE 397 (539)
Q Consensus 386 ~~~C~iCgs~~~ 397 (539)
.+.|..|+.+..
T Consensus 15 ~~~C~~C~~~I~ 26 (82)
T 2ehe_A 15 ANTCAECQQLIG 26 (82)
T ss_dssp SCBCTTTCCBCC
T ss_pred CCcCccCCCccc
Confidence 357888888765
No 209
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.89 E-value=61 Score=22.99 Aligned_cols=28 Identities=25% Similarity=0.794 Sum_probs=17.5
Q ss_pred CCCCCcccC--CccccCCCCCCccccccccc
Q 009258 306 IPPKSWYCA--RCTAKGFGSPHENCIVCERM 334 (539)
Q Consensus 306 ~P~g~W~C~--~C~~~~~~~~~~~C~vC~~l 334 (539)
...|+|.|+ .|..... .-...|+.|...
T Consensus 10 ~~~GDW~C~~~~C~~~Nf-a~R~~C~~C~~p 39 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNF-ARRTSCDRCGRE 39 (45)
T ss_dssp SCSSSCBCSSTTTCCBCC-SSCSBCSSSCCB
T ss_pred CCCCCcCCCCCCCCCEEc-cccccccccCCc
Confidence 456899999 7975442 233456666643
No 210
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=24.08 E-value=33 Score=28.54 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=30.0
Q ss_pred ccccccccccCCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 270 HTCRQCEEKAGEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 270 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
..|.+|...-.....+ .|...|+..|+..-+. .+...||.|...
T Consensus 16 ~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (115)
T 3l11_A 16 CQCGICMEILVEPVTL---PCNHTLCKPCFQSTVE---KASLCCPFCRRR 59 (115)
T ss_dssp HBCTTTCSBCSSCEEC---TTSCEECHHHHCCCCC---TTTSBCTTTCCB
T ss_pred CCCccCCcccCceeEc---CCCCHHhHHHHHHHHh---HCcCCCCCCCcc
Confidence 3799998743322223 6898899999965553 345789999754
No 211
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=23.56 E-value=19 Score=34.71 Aligned_cols=44 Identities=23% Similarity=0.488 Sum_probs=28.5
Q ss_pred ccccccccCCCCCceeccCCCCcccccCCCCCCCCCCCCCcccCCCcc
Q 009258 439 LCRACLTDKDDEKIVMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDA 486 (539)
Q Consensus 439 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~ 486 (539)
.|.+|..--- .-..|..|+..||..|+.--+.. .+.-.||.|..
T Consensus 182 ~C~iC~~iv~--~g~~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~~ 225 (238)
T 3nw0_A 182 ICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCND 225 (238)
T ss_dssp BCTTTCSBCS--SCEECSSSCCEECHHHHHHHTTT--CSSCBCTTTCC
T ss_pred cCcchhhHHh--CCcccCccChHHHHHHHHHHHHh--CCCCCCCCCCC
Confidence 3555643322 34778889999999999653222 33457999964
No 212
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.13 E-value=70 Score=24.02 Aligned_cols=30 Identities=23% Similarity=0.613 Sum_probs=21.3
Q ss_pred CCCCCCCcccCCccccCCCCCCccccccccc
Q 009258 304 KDIPPKSWYCARCTAKGFGSPHENCIVCERM 334 (539)
Q Consensus 304 ~~~P~g~W~C~~C~~~~~~~~~~~C~vC~~l 334 (539)
-+.+.|.|-|..|..... .....|+.|+..
T Consensus 25 FK~~~GsWeC~~C~V~N~-a~~~kC~ACetp 54 (57)
T 2ebv_A 25 FKRPIGSWECSVCCVSNN-AEDNKCVSCMSE 54 (57)
T ss_dssp CCCCSSSCCCSSSCCCCC-SSCSBCSSSCCB
T ss_pred cCCCCCeeeCCeeEccCc-cCCceeeEcCCc
Confidence 356779999999976542 345678888754
No 213
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=23.09 E-value=31 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.702 Sum_probs=19.8
Q ss_pred ccCccccccCcccccCCCcccc-cCCcccCCccccccccCc
Q 009258 384 ESANLCKICGRKVEESSDKFRS-CEHAFCYSKFYHERCLTP 423 (539)
Q Consensus 384 ~~~~~C~iCgs~~~~~~~~ll~-C~~~~C~~k~yH~~Cl~~ 423 (539)
.....|.||..... ....+. |.|.|| ..|+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC------~~Ci~~ 45 (74)
T 2yur_A 13 PDELLCLICKDIMT--DAVVIPCCGNSYC------DECIRT 45 (74)
T ss_dssp CGGGSCSSSCCCCT--TCEECSSSCCEEC------TTHHHH
T ss_pred CCCCCCcCCChHHh--CCeEcCCCCCHHH------HHHHHH
Confidence 34568999987654 344455 766544 566654
No 214
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.63 E-value=61 Score=24.55 Aligned_cols=32 Identities=22% Similarity=0.653 Sum_probs=18.8
Q ss_pred cCccccccCcccccCCCcccccCCcccCCccccccccC
Q 009258 385 SANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLT 422 (539)
Q Consensus 385 ~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~ 422 (539)
....|..|+.+... .+.++.-. ++.||..|..
T Consensus 10 ~~~~C~~C~~~I~~-~~~~~~a~-----~~~~H~~CF~ 41 (77)
T 1g47_A 10 ASATCERCKGGFAP-AEKIVNSN-----GELYHEQCFV 41 (77)
T ss_dssp CCCBCSSSCCBCCS-TTTCEEET-----TEEECTTTCC
T ss_pred CCCCchhcCCccCC-CceEEEeC-----ccEeccccCe
Confidence 35789999988653 23333222 5667775543
No 215
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.54 E-value=18 Score=26.83 Aligned_cols=45 Identities=18% Similarity=0.551 Sum_probs=29.5
Q ss_pred ccccccccccC----CCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCccc
Q 009258 270 HTCRQCEEKAG----EKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTA 318 (539)
Q Consensus 270 ~~C~~C~~~~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 318 (539)
..|.+|...-. .+..+.--.|...||..|+...+.. .-.||.|+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~ 64 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRK 64 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCC
Confidence 47999987321 2344455689999999999644432 236888874
No 216
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=22.49 E-value=35 Score=27.92 Aligned_cols=29 Identities=31% Similarity=0.775 Sum_probs=18.9
Q ss_pred CCCCCcccCCccccCCCCCCcccccccccC
Q 009258 306 IPPKSWYCARCTAKGFGSPHENCIVCERMN 335 (539)
Q Consensus 306 ~P~g~W~C~~C~~~~~~~~~~~C~vC~~l~ 335 (539)
.+.|+|.|+.|..... .....|+.|+..+
T Consensus 61 ~~~g~W~C~~C~~~N~-a~~~~C~~C~~pk 89 (92)
T 3gj8_B 61 KPEGSWDCEVCLVQNK-ADSTKCIACESAK 89 (92)
T ss_dssp ---CCEECTTTCCEEC-SSCSBCTTTCCBC
T ss_pred CCCCcccCCcCCcCCh-hhcccccccCCCC
Confidence 3669999999986553 3455788887544
No 217
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=22.27 E-value=39 Score=22.70 Aligned_cols=28 Identities=29% Similarity=0.729 Sum_probs=18.2
Q ss_pred CCCCcccCCccccCCCCCCcccccccccC
Q 009258 307 PPKSWYCARCTAKGFGSPHENCIVCERMN 335 (539)
Q Consensus 307 P~g~W~C~~C~~~~~~~~~~~C~vC~~l~ 335 (539)
..|.|-|+.|..... .....|+.|+..+
T Consensus 4 ~~G~W~C~~C~v~N~-~~~~kC~aCet~K 31 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNK-ADSTKCIACESAK 31 (34)
T ss_dssp --CCEECTTTCCEEC-SSCSBCTTTCCBC
T ss_pred CCCceECCeeEeECc-cccCEEcccCCcC
Confidence 568999999976542 2345788887543
No 218
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=21.90 E-value=44 Score=22.28 Aligned_cols=27 Identities=22% Similarity=0.688 Sum_probs=18.1
Q ss_pred CCCCcccCCccccCCCCCCccccccccc
Q 009258 307 PPKSWYCARCTAKGFGSPHENCIVCERM 334 (539)
Q Consensus 307 P~g~W~C~~C~~~~~~~~~~~C~vC~~l 334 (539)
..|.|-|+.|..... .....|+.|+..
T Consensus 4 ~~g~W~C~~C~~~N~-~~~~kC~aC~tp 30 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNK-PEAVKCVACETP 30 (33)
T ss_dssp --CCEECTTTCCEEC-TTCSBCTTTCCB
T ss_pred CCCceeCCcccCCCc-cccCEEcccCCC
Confidence 458899999986542 345578888753
No 219
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=21.68 E-value=15 Score=27.60 Aligned_cols=46 Identities=20% Similarity=0.538 Sum_probs=30.6
Q ss_pred cccccccccc----CCCCceeeCcCCCcCcccccCCCCCCCCCCCcccCCcccc
Q 009258 270 HTCRQCEEKA----GEKDGLVCDSCEEMYHLSCIEPAFKDIPPKSWYCARCTAK 319 (539)
Q Consensus 270 ~~C~~C~~~~----~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 319 (539)
..|.+|...- ..+.....-.|.-.||..|+..-+..- -.||.|+..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 60 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKK 60 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCc
Confidence 3699998632 124455666899999999996544322 378888744
No 220
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.79 E-value=40 Score=25.01 Aligned_cols=10 Identities=30% Similarity=1.225 Sum_probs=8.3
Q ss_pred CCcccCCCcc
Q 009258 477 GNWFCRKCDA 486 (539)
Q Consensus 477 ~~W~C~~C~~ 486 (539)
.+|.||.|..
T Consensus 35 ~dw~CP~Cg~ 44 (54)
T 4rxn_A 35 DDWVCPLCGV 44 (54)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCcCCCC
Confidence 4699999975
No 221
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=20.40 E-value=21 Score=30.64 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=0.0
Q ss_pred eeccCCCCcccccCCCCCCCCCCCCCcccCCCcch
Q 009258 453 VMCDGCDQGYHLYCMDPPRTSVPKGNWFCRKCDAG 487 (539)
Q Consensus 453 l~Cd~C~~~yH~~Cl~Ppl~~~P~~~W~C~~C~~~ 487 (539)
+.-..|...||..|+.+=+.. .-.||-|+..
T Consensus 79 v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 79 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 109 (117)
T ss_dssp -----------------------------------
T ss_pred cccCCcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence 333579999999999975443 2369999864
No 222
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.40 E-value=39 Score=25.48 Aligned_cols=33 Identities=24% Similarity=0.623 Sum_probs=19.5
Q ss_pred ccCccccccCcccccCCCcccccCCcccCCccccccccCc
Q 009258 384 ESANLCKICGRKVEESSDKFRSCEHAFCYSKFYHERCLTP 423 (539)
Q Consensus 384 ~~~~~C~iCgs~~~~~~~~ll~C~~~~C~~k~yH~~Cl~~ 423 (539)
.....|.||.....+ ...+..|.|.| |..|+..
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~CgH~f------C~~Ci~~ 45 (72)
T 2djb_A 13 TPYILCSICKGYLID-ATTITECLHTF------CKSCIVR 45 (72)
T ss_dssp CGGGSCTTTSSCCSS-CEECSSSCCEE------CHHHHHH
T ss_pred CCCCCCCCCChHHHC-cCEECCCCCHH------HHHHHHH
Confidence 345689999876543 22233676644 4566653
No 223
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=20.37 E-value=65 Score=30.95 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=30.3
Q ss_pred ccchhhhhhhccccccCchhhhhhhHHHHHHHHHHH
Q 009258 174 FNLSAINSRMKQGAYENSPMQFMADVQQVWKKFQEI 209 (539)
Q Consensus 174 ~Dl~~Id~rl~~G~Y~~sp~~f~~DV~~vwknl~~~ 209 (539)
.-|.+|..+|..|.|.-.+.+...||...|.+++.+
T Consensus 73 ~ll~~lqtklr~~~~~ppeg~~~~di~~~W~~Le~a 108 (235)
T 2odv_A 73 GIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVA 108 (235)
T ss_dssp HHHHHHHHHHHTTSSCCCTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 347788899999998876678899999999998754
No 224
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.07 E-value=91 Score=22.78 Aligned_cols=10 Identities=40% Similarity=1.235 Sum_probs=8.3
Q ss_pred CCcccCCCcc
Q 009258 477 GNWFCRKCDA 486 (539)
Q Consensus 477 ~~W~C~~C~~ 486 (539)
.+|.||.|..
T Consensus 35 ~dw~CP~Cg~ 44 (52)
T 1e8j_A 35 DDWACPVCGA 44 (52)
T ss_dssp TTCCCSSSCC
T ss_pred CCCcCCCCCC
Confidence 4699999975
Done!