Query 009260
Match_columns 539
No_of_seqs 19 out of 21
Neff 2.5
Searched_HMMs 46136
Date Thu Mar 28 22:23:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09731 Mitofilin: Mitochondr 100.0 2.6E-32 5.5E-37 281.3 34.1 262 268-534 208-484 (582)
2 KOG1854 Mitochondrial inner me 98.1 0.00057 1.2E-08 75.2 22.8 233 294-533 258-547 (657)
3 PRK06569 F0F1 ATP synthase sub 95.5 0.58 1.2E-05 44.2 14.6 98 330-443 53-152 (155)
4 PRK09174 F0F1 ATP synthase sub 95.5 0.78 1.7E-05 44.3 15.5 74 330-417 96-169 (204)
5 COG0711 AtpF F0F1-type ATP syn 95.0 2.6 5.7E-05 39.0 16.7 81 328-422 47-127 (161)
6 COG4223 Uncharacterized protei 94.7 0.18 3.9E-06 53.5 9.6 60 462-529 261-320 (422)
7 CHL00118 atpG ATP synthase CF0 94.3 2.6 5.6E-05 38.5 14.9 75 330-418 65-139 (156)
8 PTZ00121 MAEBL; Provisional 93.3 14 0.0003 45.8 21.9 13 426-438 1251-1263(2084)
9 PRK08476 F0F1 ATP synthase sub 93.2 4.3 9.3E-05 36.8 14.1 28 329-356 49-76 (141)
10 PRK06568 F0F1 ATP synthase sub 91.8 4.8 0.0001 37.9 13.0 75 330-418 47-121 (154)
11 PRK14472 F0F1 ATP synthase sub 91.5 11 0.00025 34.8 15.2 28 329-356 60-87 (175)
12 PRK07353 F0F1 ATP synthase sub 91.2 10 0.00022 33.5 14.9 27 330-356 48-74 (140)
13 PTZ00121 MAEBL; Provisional 90.8 24 0.00052 44.0 20.0 14 287-300 1091-1104(2084)
14 PRK13454 F0F1 ATP synthase sub 90.6 15 0.00033 34.6 15.4 28 329-356 73-100 (181)
15 PRK13453 F0F1 ATP synthase sub 90.2 16 0.00034 34.0 16.8 28 329-356 60-87 (173)
16 PRK14475 F0F1 ATP synthase sub 89.8 15 0.00032 34.0 14.0 28 329-356 52-79 (167)
17 CHL00019 atpF ATP synthase CF0 88.9 20 0.00044 33.5 16.8 34 329-362 66-99 (184)
18 PRK14471 F0F1 ATP synthase sub 88.7 19 0.00041 32.9 14.6 27 329-355 50-76 (164)
19 PRK00409 recombination and DNA 88.5 20 0.00044 41.0 16.8 52 360-411 544-595 (782)
20 PRK06231 F0F1 ATP synthase sub 88.5 25 0.00054 34.0 16.1 26 329-354 90-115 (205)
21 TIGR03321 alt_F1F0_F0_B altern 88.2 23 0.00051 34.6 15.0 24 333-356 51-74 (246)
22 PF09726 Macoilin: Transmembra 88.2 29 0.00064 39.6 17.6 43 390-432 556-609 (697)
23 PRK13428 F0F1 ATP synthase sub 88.1 14 0.00031 39.4 14.5 25 330-354 44-68 (445)
24 KOG1029 Endocytic adaptor prot 87.2 39 0.00085 40.0 17.9 111 348-458 460-591 (1118)
25 PRK14473 F0F1 ATP synthase sub 86.7 25 0.00054 32.1 14.5 28 329-356 50-77 (164)
26 KOG0163 Myosin class VI heavy 86.0 33 0.00071 40.6 16.4 89 337-425 898-993 (1259)
27 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.7 26 0.00057 31.4 16.8 102 337-443 15-118 (132)
28 PRK13455 F0F1 ATP synthase sub 85.4 32 0.00069 32.1 16.5 28 329-356 69-96 (184)
29 PRK09174 F0F1 ATP synthase sub 85.2 39 0.00084 32.9 16.8 70 341-410 86-155 (204)
30 KOG0994 Extracellular matrix g 85.0 1.1E+02 0.0024 38.0 20.3 74 311-384 1565-1646(1758)
31 KOG0976 Rho/Rac1-interacting s 84.9 34 0.00074 40.6 16.0 98 347-444 302-407 (1265)
32 PRK05759 F0F1 ATP synthase sub 84.8 29 0.00062 31.1 14.7 27 329-355 46-72 (156)
33 PRK13460 F0F1 ATP synthase sub 84.7 33 0.00072 31.8 14.7 28 329-356 58-85 (173)
34 PF09731 Mitofilin: Mitochondr 84.0 68 0.0015 34.7 21.3 38 56-95 2-44 (582)
35 TIGR01069 mutS2 MutS2 family p 83.7 45 0.00097 38.3 16.3 71 337-411 520-590 (771)
36 PRK13461 F0F1 ATP synthase sub 82.9 37 0.0008 30.9 14.5 26 330-355 48-73 (159)
37 PRK13454 F0F1 ATP synthase sub 82.7 44 0.00095 31.6 16.7 14 432-445 144-157 (181)
38 PF09726 Macoilin: Transmembra 81.4 1.1E+02 0.0023 35.2 18.1 30 422-451 571-601 (697)
39 KOG0971 Microtubule-associated 80.8 97 0.0021 37.5 17.6 65 329-398 287-358 (1243)
40 PF07888 CALCOCO1: Calcium bin 80.5 1.1E+02 0.0023 34.7 18.9 127 317-446 274-426 (546)
41 PRK08475 F0F1 ATP synthase sub 80.3 51 0.0011 30.8 13.2 25 330-354 65-89 (167)
42 PRK14474 F0F1 ATP synthase sub 79.9 68 0.0015 32.0 17.3 26 330-355 48-73 (250)
43 PRK12705 hypothetical protein; 79.5 1.1E+02 0.0024 34.1 17.3 19 335-353 59-77 (508)
44 PRK07352 F0F1 ATP synthase sub 78.7 56 0.0012 30.3 14.7 28 329-356 61-88 (174)
45 PF07111 HCR: Alpha helical co 77.1 1.6E+02 0.0034 34.6 20.3 41 321-363 60-100 (739)
46 TIGR01144 ATP_synt_b ATP synth 77.0 54 0.0012 29.2 14.5 24 330-353 38-61 (147)
47 PF08826 DMPK_coil: DMPK coile 76.4 17 0.00036 30.1 7.5 48 325-372 7-58 (61)
48 PRK14474 F0F1 ATP synthase sub 75.5 91 0.002 31.1 15.5 9 343-351 40-48 (250)
49 PRK12704 phosphodiesterase; Pr 75.4 1.4E+02 0.003 33.1 16.8 17 335-351 64-80 (520)
50 PRK14472 F0F1 ATP synthase sub 75.4 70 0.0015 29.7 16.8 48 341-388 51-98 (175)
51 PF02841 GBP_C: Guanylate-bind 74.5 99 0.0021 31.1 16.5 23 64-86 1-23 (297)
52 PF10146 zf-C4H2: Zinc finger- 73.7 1E+02 0.0022 30.9 14.3 65 420-494 43-108 (230)
53 PRK10361 DNA recombination pro 72.1 1.7E+02 0.0036 32.6 21.7 74 343-417 64-138 (475)
54 CHL00118 atpG ATP synthase CF0 71.2 84 0.0018 28.8 16.9 94 341-445 55-148 (156)
55 PRK09173 F0F1 ATP synthase sub 71.1 83 0.0018 28.6 16.7 28 329-356 44-71 (159)
56 KOG1029 Endocytic adaptor prot 70.7 2.1E+02 0.0046 34.4 16.7 15 352-366 358-372 (1118)
57 PF00430 ATP-synt_B: ATP synth 70.2 69 0.0015 27.4 11.8 27 329-355 41-67 (132)
58 PF00769 ERM: Ezrin/radixin/mo 70.0 1.2E+02 0.0027 30.2 14.0 32 423-454 75-106 (246)
59 PRK08475 F0F1 ATP synthase sub 68.8 1E+02 0.0022 28.8 16.4 82 341-422 55-136 (167)
60 PRK06231 F0F1 ATP synthase sub 68.7 1.2E+02 0.0026 29.5 16.5 12 341-352 81-92 (205)
61 TIGR03321 alt_F1F0_F0_B altern 68.1 1.3E+02 0.0028 29.6 15.5 9 343-351 40-48 (246)
62 KOG0288 WD40 repeat protein Ti 66.7 2.2E+02 0.0047 31.8 17.0 50 423-472 90-141 (459)
63 PRK05759 F0F1 ATP synthase sub 66.3 99 0.0021 27.7 16.8 66 344-409 40-105 (156)
64 PRK13461 F0F1 ATP synthase sub 66.1 1.1E+02 0.0023 28.0 16.8 65 341-405 38-102 (159)
65 PRK07353 F0F1 ATP synthase sub 66.0 95 0.0021 27.4 16.8 15 341-355 38-52 (140)
66 PF05262 Borrelia_P83: Borreli 65.8 2.3E+02 0.0049 31.7 18.2 10 305-314 194-203 (489)
67 PRK13428 F0F1 ATP synthase sub 65.6 2E+02 0.0044 31.0 16.8 35 384-418 84-118 (445)
68 PF00430 ATP-synt_B: ATP synth 64.6 91 0.002 26.7 11.4 73 342-418 33-105 (132)
69 PRK13453 F0F1 ATP synthase sub 64.6 1.2E+02 0.0027 28.2 16.8 12 341-352 51-62 (173)
70 KOG1265 Phospholipase C [Lipid 64.5 2.4E+02 0.0053 34.3 15.8 36 29-68 736-771 (1189)
71 KOG0163 Myosin class VI heavy 64.4 69 0.0015 38.1 11.5 55 381-435 971-1030(1259)
72 COG0711 AtpF F0F1-type ATP syn 64.3 1.2E+02 0.0027 28.2 16.8 66 343-408 41-106 (161)
73 TIGR01144 ATP_synt_b ATP synth 64.0 1.1E+02 0.0023 27.3 16.8 64 341-404 28-91 (147)
74 PF06705 SF-assemblin: SF-asse 63.9 1.5E+02 0.0033 29.0 21.3 120 356-475 37-168 (247)
75 PF03194 LUC7: LUC7 N_terminus 63.1 1.5E+02 0.0032 30.0 12.3 38 437-474 190-229 (254)
76 PRK00409 recombination and DNA 63.0 1.7E+02 0.0036 33.9 14.2 11 276-286 411-421 (782)
77 PF14265 DUF4355: Domain of un 62.1 1.1E+02 0.0024 26.8 11.6 34 462-500 68-101 (125)
78 KOG0161 Myosin class II heavy 60.6 4.3E+02 0.0094 34.3 17.9 41 333-373 895-935 (1930)
79 PF07111 HCR: Alpha helical co 58.6 3.7E+02 0.008 31.7 15.8 79 329-407 497-577 (739)
80 PRK08476 F0F1 ATP synthase sub 58.0 1.5E+02 0.0032 27.0 17.8 53 396-448 84-136 (141)
81 PF04111 APG6: Autophagy prote 57.9 2.2E+02 0.0049 29.4 12.9 9 439-447 135-143 (314)
82 PF00038 Filament: Intermediat 57.9 2E+02 0.0043 28.4 22.1 22 471-492 287-308 (312)
83 PRK13455 F0F1 ATP synthase sub 57.6 1.7E+02 0.0036 27.5 16.8 53 336-388 55-107 (184)
84 PF12128 DUF3584: Protein of u 57.0 4.3E+02 0.0092 32.0 23.2 14 480-493 777-790 (1201)
85 PF02841 GBP_C: Guanylate-bind 56.0 2.3E+02 0.0049 28.6 12.3 31 294-324 155-191 (297)
86 PRK00106 hypothetical protein; 55.4 3.5E+02 0.0076 30.5 16.1 49 474-522 271-326 (535)
87 PRK14473 F0F1 ATP synthase sub 55.0 1.7E+02 0.0037 26.8 16.8 67 341-407 41-107 (164)
88 PRK13460 F0F1 ATP synthase sub 54.9 1.8E+02 0.0039 27.0 16.7 49 341-389 49-97 (173)
89 COG4942 Membrane-bound metallo 54.9 3.3E+02 0.0072 30.1 16.1 15 311-325 148-162 (420)
90 TIGR03825 FliH_bacil flagellar 54.0 2.3E+02 0.005 28.0 14.2 23 336-358 34-56 (255)
91 PRK11637 AmiB activator; Provi 53.8 2.9E+02 0.0063 29.1 16.6 8 312-319 158-165 (428)
92 PRK09039 hypothetical protein; 53.8 2.8E+02 0.0062 29.0 14.9 19 360-378 116-134 (343)
93 PF04111 APG6: Autophagy prote 53.3 2E+02 0.0043 29.8 11.6 9 375-383 61-69 (314)
94 PF15619 Lebercilin: Ciliary p 52.8 2.3E+02 0.005 27.7 17.0 31 316-346 47-79 (194)
95 PF07352 Phage_Mu_Gam: Bacteri 51.7 52 0.0011 30.1 6.5 81 376-473 5-85 (149)
96 KOG0804 Cytoplasmic Zn-finger 50.9 4.1E+02 0.0089 30.0 15.0 30 422-451 427-456 (493)
97 PLN03229 acetyl-coenzyme A car 49.6 1.6E+02 0.0034 34.7 11.2 41 330-371 457-497 (762)
98 KOG0612 Rho-associated, coiled 48.7 6.5E+02 0.014 31.6 18.5 53 342-394 594-646 (1317)
99 PRK11637 AmiB activator; Provi 48.0 3.6E+02 0.0077 28.4 17.9 9 314-322 141-149 (428)
100 TIGR03319 YmdA_YtgF conserved 45.0 4.8E+02 0.01 29.0 18.0 16 335-350 58-73 (514)
101 CHL00019 atpF ATP synthase CF0 44.2 2.8E+02 0.006 26.1 16.6 50 340-389 56-105 (184)
102 PRK00106 hypothetical protein; 44.1 5.2E+02 0.011 29.2 17.6 27 467-493 229-257 (535)
103 KOG0977 Nuclear envelope prote 43.7 5.5E+02 0.012 29.4 17.1 31 321-351 106-136 (546)
104 COG1579 Zn-ribbon protein, pos 42.8 3.9E+02 0.0084 27.4 15.5 89 361-449 90-182 (239)
105 PF00038 Filament: Intermediat 42.8 3.5E+02 0.0075 26.8 17.5 138 321-465 68-212 (312)
106 KOG0971 Microtubule-associated 42.6 4E+02 0.0087 32.7 13.0 76 338-418 275-356 (1243)
107 PF06705 SF-assemblin: SF-asse 42.3 3.4E+02 0.0074 26.6 21.6 112 332-445 67-190 (247)
108 PLN03229 acetyl-coenzyme A car 41.7 2.9E+02 0.0064 32.6 11.7 44 332-375 508-569 (762)
109 KOG4364 Chromatin assembly fac 41.5 4.9E+02 0.011 30.9 13.2 53 317-371 255-307 (811)
110 PF05266 DUF724: Protein of un 40.9 3.6E+02 0.0077 26.4 11.2 131 297-445 38-174 (190)
111 COG3064 TolA Membrane protein 40.2 5.3E+02 0.012 28.2 15.5 15 337-351 103-117 (387)
112 KOG2412 Nuclear-export-signal 39.2 3.1E+02 0.0068 31.5 11.2 95 314-437 191-285 (591)
113 PLN03086 PRLI-interacting fact 39.0 2.4E+02 0.0052 32.1 10.4 17 336-352 4-20 (567)
114 PF14966 DNA_repr_REX1B: DNA r 38.6 2.8E+02 0.006 24.5 10.2 81 311-392 1-88 (97)
115 TIGR01069 mutS2 MutS2 family p 38.4 7E+02 0.015 29.1 18.2 8 316-323 484-491 (771)
116 PLN03188 kinesin-12 family pro 38.1 1.4E+02 0.0031 36.9 8.9 70 18-94 690-778 (1320)
117 PRK14475 F0F1 ATP synthase sub 37.4 3.4E+02 0.0074 25.2 16.7 13 340-352 42-54 (167)
118 PF04880 NUDE_C: NUDE protein, 35.9 58 0.0013 31.5 4.5 38 356-402 10-47 (166)
119 PF08232 Striatin: Striatin fa 35.6 3E+02 0.0065 25.4 8.8 62 311-376 5-69 (134)
120 TIGR01837 PHA_granule_1 poly(h 35.0 3.1E+02 0.0068 24.7 8.7 65 381-445 47-111 (118)
121 PF08703 PLC-beta_C: PLC-beta 34.8 4.7E+02 0.01 26.0 17.6 108 310-421 45-154 (185)
122 KOG0161 Myosin class II heavy 33.9 1.2E+03 0.027 30.6 18.4 33 427-459 1157-1189(1930)
123 KOG3915 Transcription regulato 33.6 5E+02 0.011 29.7 11.5 44 349-394 517-560 (641)
124 TIGR02449 conserved hypothetic 33.4 2.6E+02 0.0057 23.6 7.3 27 419-445 31-57 (65)
125 KOG3054 Uncharacterized conser 33.0 4.4E+02 0.0096 27.9 10.4 74 338-416 101-174 (299)
126 KOG4364 Chromatin assembly fac 32.9 5.4E+02 0.012 30.6 11.9 18 334-351 282-299 (811)
127 PF04568 IATP: Mitochondrial A 32.7 2.1E+02 0.0045 25.8 7.1 47 332-387 53-99 (100)
128 KOG4807 F-actin binding protei 32.6 7.7E+02 0.017 27.9 16.5 63 352-415 385-450 (593)
129 PRK07352 F0F1 ATP synthase sub 32.5 4.1E+02 0.009 24.7 17.4 13 341-353 52-64 (174)
130 PF12072 DUF3552: Domain of un 31.2 4.8E+02 0.011 25.1 15.8 26 324-352 52-77 (201)
131 KOG1899 LAR transmembrane tyro 31.0 4.5E+02 0.0097 31.1 10.9 132 342-515 198-329 (861)
132 PF14772 NYD-SP28: Sperm tail 31.0 3.5E+02 0.0075 23.3 12.1 81 320-407 8-97 (104)
133 PRK14471 F0F1 ATP synthase sub 30.6 4.3E+02 0.0092 24.2 17.5 9 343-351 43-51 (164)
134 cd09235 V_Alix Middle V-domain 30.4 6.3E+02 0.014 26.1 11.9 106 368-474 202-309 (339)
135 PLN03086 PRLI-interacting fact 29.8 3.8E+02 0.0082 30.6 10.1 8 365-372 12-19 (567)
136 PF15346 ARGLU: Arginine and g 29.6 5.2E+02 0.011 24.9 13.1 60 323-382 39-98 (149)
137 PRK03963 V-type ATP synthase s 29.5 4.7E+02 0.01 24.4 14.6 21 334-354 9-29 (198)
138 PF12128 DUF3584: Protein of u 29.4 1.1E+03 0.024 28.7 23.7 33 322-354 650-682 (1201)
139 PRK06568 F0F1 ATP synthase sub 29.1 5.1E+02 0.011 24.7 17.6 14 421-434 109-122 (154)
140 PF05262 Borrelia_P83: Borreli 29.0 8.7E+02 0.019 27.3 15.2 10 67-76 87-96 (489)
141 PF15175 SPATA24: Spermatogene 29.0 5.6E+02 0.012 25.1 10.0 87 361-449 39-136 (153)
142 PTZ00266 NIMA-related protein 29.0 1E+03 0.022 29.1 13.8 8 471-478 602-609 (1021)
143 KOG3091 Nuclear pore complex, 28.8 3.3E+02 0.0072 30.8 9.3 78 437-535 370-447 (508)
144 PRK10780 periplasmic chaperone 28.7 4.8E+02 0.01 24.2 13.1 34 336-369 58-92 (165)
145 TIGR00634 recN DNA repair prot 28.5 8.3E+02 0.018 26.9 14.7 50 483-533 286-339 (563)
146 PF03938 OmpH: Outer membrane 28.1 4.3E+02 0.0094 23.5 10.5 88 334-421 31-118 (158)
147 PF12777 MT: Microtubule-bindi 27.8 7E+02 0.015 25.8 13.2 57 390-447 68-131 (344)
148 PF06936 Selenoprotein_S: Sele 27.7 3.4E+02 0.0074 26.8 8.3 10 303-312 32-41 (190)
149 PF05700 BCAS2: Breast carcino 27.6 5.9E+02 0.013 24.9 11.1 21 332-352 136-156 (221)
150 PF03179 V-ATPase_G: Vacuolar 27.4 4E+02 0.0086 22.8 11.6 15 338-352 21-35 (105)
151 KOG2792 Putative cytochrome C 27.1 67 0.0015 33.6 3.6 58 23-82 36-95 (280)
152 COG4487 Uncharacterized protei 27.1 9.3E+02 0.02 27.0 18.3 129 318-456 49-195 (438)
153 PF10234 Cluap1: Clusterin-ass 27.0 7.4E+02 0.016 25.8 12.1 68 346-413 144-217 (267)
154 KOG4466 Component of histone d 26.9 8E+02 0.017 26.2 11.3 106 327-443 34-139 (291)
155 PRK10824 glutaredoxin-4; Provi 26.9 28 0.00061 31.3 0.8 31 56-86 69-101 (115)
156 KOG0579 Ste20-like serine/thre 26.9 9.8E+02 0.021 29.0 12.7 90 323-417 931-1036(1187)
157 PF10079 DUF2317: Uncharacteri 26.6 7E+02 0.015 28.0 11.3 76 323-410 419-494 (542)
158 KOG0018 Structural maintenance 26.0 1.1E+03 0.023 29.5 13.2 81 294-385 750-839 (1141)
159 PF12709 Kinetocho_Slk19: Cent 25.5 3.7E+02 0.0081 24.0 7.3 32 342-373 45-76 (87)
160 COG4942 Membrane-bound metallo 25.4 9.7E+02 0.021 26.7 17.0 7 344-350 151-157 (420)
161 PLN03188 kinesin-12 family pro 25.2 1.5E+03 0.032 28.8 18.3 32 412-443 1206-1238(1320)
162 PRK10869 recombination and rep 25.2 9.8E+02 0.021 26.6 14.1 53 479-532 277-333 (553)
163 KOG0977 Nuclear envelope prote 24.6 1.1E+03 0.024 27.1 18.4 32 321-352 63-98 (546)
164 PRK09173 F0F1 ATP synthase sub 24.5 5.4E+02 0.012 23.4 16.9 12 341-352 35-46 (159)
165 PF04568 IATP: Mitochondrial A 23.9 5.4E+02 0.012 23.3 8.1 28 322-349 56-86 (100)
166 PF05283 MGC-24: Multi-glycosy 23.7 1.1E+02 0.0025 30.1 4.2 19 62-80 163-181 (186)
167 PF07946 DUF1682: Protein of u 23.2 5.3E+02 0.012 26.6 9.1 19 267-285 187-205 (321)
168 PF01093 Clusterin: Clusterin; 22.9 1.1E+03 0.023 26.3 12.3 17 433-449 83-99 (436)
169 cd07621 BAR_SNX5_6 The Bin/Amp 22.6 8E+02 0.017 24.7 14.5 59 312-374 87-148 (219)
170 PRK06228 F0F1 ATP synthase sub 22.6 1.9E+02 0.0041 26.7 5.2 45 329-373 81-125 (131)
171 PF09325 Vps5: Vps5 C terminal 22.2 6.5E+02 0.014 23.5 13.8 104 312-418 88-198 (236)
172 PRK13729 conjugal transfer pil 22.0 4E+02 0.0086 30.0 8.3 10 363-372 79-88 (475)
173 TIGR02189 GlrX-like_plant Glut 21.7 41 0.00089 28.7 0.8 31 56-86 60-92 (99)
174 KOG4302 Microtubule-associated 21.4 3.1E+02 0.0068 31.9 7.6 56 422-493 60-115 (660)
175 PF04375 HemX: HemX; InterPro 21.2 94 0.002 32.5 3.4 19 310-328 277-295 (372)
176 PHA01746 hypothetical protein 21.1 53 0.0012 30.8 1.4 50 36-86 35-92 (131)
177 PF08598 Sds3: Sds3-like; Int 20.6 2E+02 0.0044 26.9 5.2 22 353-374 17-38 (205)
178 KOG0993 Rab5 GTPase effector R 20.3 4.4E+02 0.0096 29.7 8.1 120 340-465 115-242 (542)
179 TIGR00255 conserved hypothetic 20.1 9.9E+02 0.022 24.8 14.7 22 469-490 232-253 (291)
No 1
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=100.00 E-value=2.6e-32 Score=281.26 Aligned_cols=262 Identities=29% Similarity=0.347 Sum_probs=232.7
Q ss_pred cchhhhhhccccccccCCCcchhhhhhhHhhhhcccc--cCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 009260 268 PASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYL--SKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYE 345 (539)
Q Consensus 268 ~~SLle~Y~L~d~~d~~~~~~~E~~~~~~eel~~g~~--s~DGKlvld~~~AIhaAe~rQAe~DA~~f~Ee~r~lkekyE 345 (539)
-+.+++.|+..+..+.....+..-.-+.+..++++.+ .+++.++.++...|++..++.++++...+.+..++|+++|+
T Consensus 208 ~~~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 208 LPKIVEEYKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889988766555542222222255667788888 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------
Q 009260 346 KELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEI-------- 417 (539)
Q Consensus 346 kELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAEl-------- 417 (539)
..++..+.+..++.++... ++.+..+......+..|++.++++|+.+|++..+..+++|++.......|+
T Consensus 288 e~~~~~~~~~~~~le~~~~--~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i 365 (582)
T PF09731_consen 288 ELLSKLREELEQELEEKRA--ELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEI 365 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877766543 455556666788899999999999999999999999999998877777766
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHhhhhHhhHHHHHhcC-----CCcHHHHHHHHHhhcC
Q 009260 418 AASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG-----LPIQKEIDTLYTYLDG 492 (539)
Q Consensus 418 ~aaiA~EKA~qieki~ea~l~i~AL~mAfyarSeeaRqSH~vHKLALGalALedAls~G-----aPI~~Evd~Lr~~l~G 492 (539)
..+|..||..++.+|++++.+|++||+++++|++..+.+|.+|+|.+++.+|.++|.+| .||..||+.|+.+..+
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~~~~ 445 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKELAPD 445 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHhCCC
Confidence 88899999999999999999999999999999999999999999999999999999999 9999999999999888
Q ss_pred CCCchHHHHHHhcCchHHhhcCCcchHHhhhccccccchhhc
Q 009260 493 IEKDSVLDLVLSSLPEETRYHGTETLLQLNQKPTREREKKRI 534 (539)
Q Consensus 493 idKDsll~lalsSLPeea~~~Gt~T~lQL~qkF~~~K~~~r~ 534 (539)
|+||++||++||+++..+|++|+.||.++|+.|...||-
T Consensus 446 ---d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~ 484 (582)
T PF09731_consen 446 ---DELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRR 484 (582)
T ss_pred ---ChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999983
No 2
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=98.12 E-value=0.00057 Score=75.23 Aligned_cols=233 Identities=21% Similarity=0.320 Sum_probs=141.0
Q ss_pred hhHhhhhcc-cccCCCchhhH-HHHHHHHHHHh-hhhh-------------------hHHHHHHHHHHHHHHHHHHHHHH
Q 009260 294 NVMEELNNG-YLSKDGKVVLD-FLQAIHAAEQR-QAEL-------------------DGRAFAEEKRALKEKYEKELRDS 351 (539)
Q Consensus 294 ~~~eel~~g-~~s~DGKlvld-~~~AIhaAe~r-QAe~-------------------DA~~f~Ee~r~lkekyEkELkda 351 (539)
+-.+++++- |-+++++.|++ |=+-+..+++. +-|+ |...|.=+.-.=-..|.++|.|.
T Consensus 258 ~qldnv~~ev~~~~se~~vv~ky~~~ve~ar~~F~~EL~si~p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~ 337 (657)
T KOG1854|consen 258 NQLDNVKREVSSSNSEAEVVGKYSELVEKARHQFEQELESILPGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQ 337 (657)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666665 77778776664 33344444332 1222 22222222222245788999986
Q ss_pred HHHHhhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH-------
Q 009260 352 RARELMRTEEA-------------AILEKELKRERAKAAATIKSLQEKMEEKLRMELEQK-ENEAESKLKNAL------- 410 (539)
Q Consensus 352 rarElm~aeea-------------a~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~k-eeEa~~ql~~~e------- 410 (539)
.+++..+.-.| +.|..|+++.+.+-+..+-.+-+....++..||+.- ...+...+....
T Consensus 338 k~~~~~~~~~aiEk~Rl~~~~a~~~~~~~~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~ 417 (657)
T KOG1854|consen 338 KADEELHIKRAIEKQRLQDSRALRAQLEYELEAHRRELQQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQE 417 (657)
T ss_pred hhhhHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544432221 345556666666666666555555556666665432 111211111110
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhccHHHHHHHHHHHhhhhHhhHHHHHhcC------
Q 009260 411 -----ELAKAEIAASIAREKVAQIEKMAEANLHINALCM---AFYARSEEARKSYFAHKLALGALALEDALSRG------ 476 (539)
Q Consensus 411 -----elakAEl~aaiA~EKA~qieki~ea~l~i~AL~m---AfyarSeeaRqSH~vHKLALGalALedAls~G------ 476 (539)
|.. -++-.+++.||.-.=.+++-+=.++.-+.. -|-.-+.++|++ |+|-+..=+|-+-|-.|
T Consensus 418 q~~~~e~~-~~~~e~~l~ernl~~~qvg~aL~rLrgie~aL~~~~~~~~e~r~a---~q~w~ac~nlk~s~~~g~~e~r~ 493 (657)
T KOG1854|consen 418 QLLTIEFK-QKLEEAVLQERNLHSSQVGKALSRLRGIEQALQERVRAELEARKA---KQLWLACSNLKDSLNKGHYEMRR 493 (657)
T ss_pred HHHhHHHH-HHHHHHHHHHhcchHhHHHHHHHHHHhHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhhhcccccccc
Confidence 111 155566677776555555533333333333 334445666665 56778888999999999
Q ss_pred CCcHHHHHHHHHhhcCCCCchHHHHHHhcCchHHhhcCCcchHHhhhccccccchhh
Q 009260 477 LPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKPTREREKKR 533 (539)
Q Consensus 477 aPI~~Evd~Lr~~l~GidKDsll~lalsSLPeea~~~Gt~T~lQL~qkF~~~K~~~r 533 (539)
.|+-+.|..|..-.-+ |+|+.+++.++|.++...|+-|-.+|+.+|+.|-.-.|
T Consensus 494 ~pLg~~vn~~k~~~~~---delv~a~~~~ipk~~~~rgiysee~L~~RF~~l~ki~r 547 (657)
T KOG1854|consen 494 HPLGKHVNALKEVTKD---DELVAAALDSIPKEADTRGIYSEEDLRNRFNTLSKIAR 547 (657)
T ss_pred CchhHHHHHHhccCCc---HHHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 7999888887766666 99999999999999999999999999999998865444
No 3
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=95.55 E-value=0.58 Score=44.24 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRARELMRTEE-AAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAE-SKLK 407 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdararElm~aee-aa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~-~ql~ 407 (539)
|.-..++...+++.|+++|++||++.---..+ ...|..|...++++..+.++.+ |..+++...-.+. -+.+
T Consensus 53 Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~-------~~~~~~~~~~~~~~~~~~ 125 (155)
T PRK06569 53 ADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNS-------INQNIEDINLAAKQFRTN 125 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 34456677788999999999998776544444 5555555555555543333332 2233333222222 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009260 408 NALELAKAEIAASIAREKVAQIEKMAEANLHINALC 443 (539)
Q Consensus 408 ~~eelakAEl~aaiA~EKA~qieki~ea~l~i~AL~ 443 (539)
..+++- -|+.-|| +||+-.+.+||-|.
T Consensus 126 ~~~~~i--~~~~~i~-------~k~~~~~~~~~~~~ 152 (155)
T PRK06569 126 KSEAII--KLAVNII-------EKIAGTKADMNLLQ 152 (155)
T ss_pred HHHHHH--HHHHHHH-------HHHhCccccHHHHh
Confidence 333333 3444455 88888888888765
No 4
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=95.45 E-value=0.78 Score=44.29 Aligned_cols=74 Identities=26% Similarity=0.319 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNA 409 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~ 409 (539)
|.-...+-..+.+.|+++|.+||.+-.-..++|. ...+...+.+-.+++.+++++-++++.++++.
T Consensus 96 Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar--------------~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~e 161 (204)
T PRK09174 96 AARLKQEADAAVAAYEQELAQARAKAHSIAQAAR--------------EAAKAKAEAERAAIEASLEKKLKEAEARIAAI 161 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667889999999999876553333331 11122222233344444444555555555544
Q ss_pred HHHHHHHH
Q 009260 410 LELAKAEI 417 (539)
Q Consensus 410 eelakAEl 417 (539)
...|..++
T Consensus 162 k~~A~~el 169 (204)
T PRK09174 162 KAKAMADV 169 (204)
T ss_pred HHHHHHHH
Confidence 44444433
No 5
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=94.95 E-value=2.6 Score=39.03 Aligned_cols=81 Identities=27% Similarity=0.397 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 328 LDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLK 407 (539)
Q Consensus 328 ~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~ 407 (539)
.||..-.++.+.+.++|+++|.+||.+-.--.+.|. ..-+.+.+....+-+.++.++-+.++++++
T Consensus 47 ~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~--------------~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~ 112 (161)
T COG0711 47 AEAERLKEEAQALLAEYEQELEEAREQASEIIEQAK--------------KEAEQIAEEIKAEAEEELERIKEAAEAEIE 112 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777888899999999999843332222222 122223333444444555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 009260 408 NALELAKAEIAASIA 422 (539)
Q Consensus 408 ~~eelakAEl~aaiA 422 (539)
.....+..++.+.++
T Consensus 113 ~e~~~a~~~l~~~~~ 127 (161)
T COG0711 113 AEKERALEELRAEVA 127 (161)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444443
No 6
>COG4223 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.18 Score=53.45 Aligned_cols=60 Identities=33% Similarity=0.381 Sum_probs=51.9
Q ss_pred hhhhHhhHHHHHhcCCCcHHHHHHHHHhhcCCCCchHHHHHHhcCchHHhhcCCcchHHhhhcccccc
Q 009260 462 LALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKPTRER 529 (539)
Q Consensus 462 LALGalALedAls~GaPI~~Evd~Lr~~l~GidKDsll~lalsSLPeea~~~Gt~T~lQL~qkF~~~K 529 (539)
+|..+-+|+-|+-+|.|.-.|||.|.+.+-| |+-|.. | ......|.+|+.+|++.|..+-
T Consensus 261 ~aiaatalKtAidrggPF~aELdtL~~VaP~---dP~l~~----L-~~~A~tGvPTRaeL~~qF~~~A 320 (422)
T COG4223 261 LAIAATALKTAIDRGGPFLAELDTLESVAPG---DPALAA----L-RPYAATGVPTRAELATQFGAVA 320 (422)
T ss_pred HHHHHHHHHHHHhcCCCchHHHhhHhhhCCC---ChhhHH----h-hHHHhcCCCcHHHHHHHHHHHH
Confidence 3778899999999999999999999999999 876653 2 4577899999999999998764
No 7
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=94.32 E-value=2.6 Score=38.50 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNA 409 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~ 409 (539)
|.-..++...+.+.|++.|.+||.+..-..+. +...-+...+.+....+.+.++.-++++.++..-
T Consensus 65 Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~--------------A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~e 130 (156)
T CHL00118 65 ASEILAKANELTKQYEQELSKARKEAQLEITQ--------------SQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQ 130 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778889999999886544322211 1122233333444555556666666666555555
Q ss_pred HHHHHHHHH
Q 009260 410 LELAKAEIA 418 (539)
Q Consensus 410 eelakAEl~ 418 (539)
...+..++-
T Consensus 131 k~~a~~~l~ 139 (156)
T CHL00118 131 KEKALKSLE 139 (156)
T ss_pred HHHHHHHHH
Confidence 444444443
No 8
>PTZ00121 MAEBL; Provisional
Probab=93.28 E-value=14 Score=45.85 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhHH
Q 009260 426 VAQIEKMAEANLH 438 (539)
Q Consensus 426 A~qieki~ea~l~ 438 (539)
+..+.++-++++.
T Consensus 1251 ~EE~Rk~Eear~a 1263 (2084)
T PTZ00121 1251 NEEIRKFEEARMA 1263 (2084)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 9
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=93.17 E-value=4.3 Score=36.81 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
+|.-+.++...+++.|+..|.+||....
T Consensus 49 ~A~~~~~ea~~~~~e~e~~l~~Ar~eA~ 76 (141)
T PRK08476 49 KVKTNSSDVSEIEHEIETILKNAREEAN 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555778888899999999999976633
No 10
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=91.82 E-value=4.8 Score=37.93 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNA 409 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~ 409 (539)
|.-..++...|++.|+.+|++||....---++|. ..-..+.+++-.+.+.+.++..++++..+.+.
T Consensus 47 Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~--------------~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~E 112 (154)
T PRK06568 47 AEKLKEDAALLFEQTNAQIKKLETLRSQMIEESN--------------EVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQ 112 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446778889999999999999754432111111 11223333455556666666666666666665
Q ss_pred HHHHHHHHH
Q 009260 410 LELAKAEIA 418 (539)
Q Consensus 410 eelakAEl~ 418 (539)
.+.|.+++-
T Consensus 113 k~~Al~elr 121 (154)
T PRK06568 113 KSTASKELQ 121 (154)
T ss_pred HHHHHHHHH
Confidence 555555443
No 11
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=91.54 E-value=11 Score=34.79 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
+|.-..++-..+.++|+++|.++|....
T Consensus 60 ~Ae~~~~eA~~~~~e~e~~L~~a~~ea~ 87 (175)
T PRK14472 60 RAHSAKDEAEAILRKNRELLAKADAEAD 87 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667788889999988865443
No 12
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=91.19 E-value=10 Score=33.46 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdararEl 356 (539)
|.-..++-..+.+.|++.|.++|....
T Consensus 48 Ae~~~~ea~~~~~~~e~~L~~a~~ea~ 74 (140)
T PRK07353 48 AKERLAEAEKLEAQYEQQLASARKQAQ 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666778889999988865443
No 13
>PTZ00121 MAEBL; Provisional
Probab=90.82 E-value=24 Score=44.01 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=6.6
Q ss_pred cchhhhhhhHhhhh
Q 009260 287 KATEDFINVMEELN 300 (539)
Q Consensus 287 ~~~E~~~~~~eel~ 300 (539)
-++|++++-.|++.
T Consensus 1091 ~~~~~~~~~~e~~r 1104 (2084)
T PTZ00121 1091 EATEEAFGKAEEAK 1104 (2084)
T ss_pred hhhHHHhhhHHHhh
Confidence 34445554444443
No 14
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=90.58 E-value=15 Score=34.57 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
+|.-+.++...+.++|+..|.++|..-.
T Consensus 73 ~Ae~~~~eA~~~~~eye~~L~~Ar~EA~ 100 (181)
T PRK13454 73 AAEELKQKAVEAEKAYNKALADARAEAQ 100 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888999999999999975443
No 15
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=90.17 E-value=16 Score=34.05 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
+|.-..++-..+.+.|+++|.++|....
T Consensus 60 ~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 87 (173)
T PRK13453 60 DAEQAKLNAQKLEEENKQKLKETQEEVQ 87 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677778889999999999976554
No 16
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=89.75 E-value=15 Score=34.03 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
+|.-..++...+.+.|+++|.+||....
T Consensus 52 ~Ae~~k~eAe~~~~~~e~~L~~A~~ea~ 79 (167)
T PRK14475 52 EAQRLREEAQALLADVKAEREEAERQAA 79 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777889999999999966544
No 17
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=88.92 E-value=20 Score=33.53 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRARELMRTEEA 362 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararElm~aeea 362 (539)
+|.-..++-..+...|++.|.+||.......++|
T Consensus 66 ~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A 99 (184)
T CHL00019 66 NSEERREEAIEKLEKARARLRQAELEADEIRVNG 99 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778889999999999976554433333
No 18
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=88.68 E-value=19 Score=32.89 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRARE 355 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararE 355 (539)
+|.-..++...+.+.|++.|.+||...
T Consensus 50 ~A~~~~~ea~~~~~e~e~~l~~A~~ea 76 (164)
T PRK14471 50 SAEEARKEMQNLQADNERLLKEARAER 76 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888999999999986543
No 19
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=88.50 E-value=20 Score=40.99 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009260 360 EEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALE 411 (539)
Q Consensus 360 eeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~ee 411 (539)
+++..+.++|++++.+.....+.+.+++.++.+..|++...+++.-++++.+
T Consensus 544 ~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 544 KEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666665554
No 20
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=88.48 E-value=25 Score=34.03 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAR 354 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdarar 354 (539)
+|.-..++-..+.+.|++.|.+||..
T Consensus 90 ~Ae~~~~eA~~~l~e~e~~L~~A~~e 115 (205)
T PRK06231 90 QANELKQQAQQLLENAKQRHENALAQ 115 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778889999999999653
No 21
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=88.21 E-value=23 Score=34.63 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 333 FAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 333 f~Ee~r~lkekyEkELkdararEl 356 (539)
..++...+.+.|+.+|.+|+....
T Consensus 51 ~~~eA~~~~~e~e~~l~~a~~ea~ 74 (246)
T TIGR03321 51 KKREAEQERREYEEKNEELDQQRE 74 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677899999998865433
No 22
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.18 E-value=29 Score=39.60 Aligned_cols=43 Identities=37% Similarity=0.408 Sum_probs=26.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH--------H-H--HHHHHHHHHHHHHHH
Q 009260 390 KLRMELEQKENEAESKLKNALELAKA--------E-I--AASIAREKVAQIEKM 432 (539)
Q Consensus 390 kL~~EL~~keeEa~~ql~~~eelakA--------E-l--~aaiA~EKA~qieki 432 (539)
+||.||+.|+++...--.+++++.+- | | +-+...||..++|.-
T Consensus 556 ~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~s 609 (697)
T PF09726_consen 556 KLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENS 609 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999887765533344444432 1 1 223457888888874
No 23
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=88.11 E-value=14 Score=39.40 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRAR 354 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdarar 354 (539)
|.-..+++..++++|++.|.+++..
T Consensus 44 Ae~a~~ea~~~~~~~e~~L~~Ak~e 68 (445)
T PRK13428 44 SATAADRLAEADQAHTKAVEDAKAE 68 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788889999999999999653
No 24
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.24 E-value=39 Score=39.96 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=62.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH------HHHHHHHHh----------HHHHHHHHHH
Q 009260 348 LRDSRARELMRTEEAAILEKELKRERA---KAAATIKSLQEKMEE------KLRMELEQK----------ENEAESKLKN 408 (539)
Q Consensus 348 LkdararElm~aeeaa~LdkELk~era---k~aaaiK~lqe~~Ee------kL~~EL~~k----------eeEa~~ql~~ 408 (539)
|-|.|++-.-.-++..-+.|-.+..+. ...+.||++|++.-. .|-..|+++ ..+....+.+
T Consensus 460 l~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ 539 (1118)
T KOG1029|consen 460 LQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRK 539 (1118)
T ss_pred hhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHH
Confidence 344455544444555555553333322 237777888775422 344444444 1112222333
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHH
Q 009260 409 ALELAKA--EIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYF 458 (539)
Q Consensus 409 ~eelakA--El~aaiA~EKA~qieki~ea~l~i~AL~mAfyarSeeaRqSH~ 458 (539)
-+++.++ .-.-.|-+|+.+-+++|.-.|.|+.-|-.-+|+.----++++.
T Consensus 540 ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 540 KELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454 4455677999999999988888887777766666555555555
No 25
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=86.73 E-value=25 Score=32.12 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
+|.-..++...+.++|++.|.+||....
T Consensus 50 ~Ae~~~~ea~~~~~e~e~~l~~A~~ea~ 77 (164)
T PRK14473 50 DAEKVREQLANAKRDYEAELAKARQEAA 77 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788999999999875544
No 26
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=85.98 E-value=33 Score=40.59 Aligned_cols=89 Identities=27% Similarity=0.302 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHH
Q 009260 337 KRALKEKYEKELRDSRARELMRTEEAAILEK---ELKRERAKAAATIKSLQE---KMEEKLRMELEQKENEAESKLKNAL 410 (539)
Q Consensus 337 ~r~lkekyEkELkdararElm~aeeaa~Ldk---ELk~erak~aaaiK~lqe---~~EekL~~EL~~keeEa~~ql~~~e 410 (539)
..++-..||+=+++...++.-.++++..|.| .++.||++.-+.-|...| +.+-++.+|+++|-+|.+++-.+-+
T Consensus 898 ~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~ 977 (1259)
T KOG0163|consen 898 YDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEE 977 (1259)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3444556666666666566555666555443 566677666554444333 3333667777788777776554333
Q ss_pred H-HHHHHHHHHHHHHH
Q 009260 411 E-LAKAEIAASIAREK 425 (539)
Q Consensus 411 e-lakAEl~aaiA~EK 425 (539)
| ...+|+-+-+|+|+
T Consensus 978 e~~l~~e~q~qla~e~ 993 (1259)
T KOG0163|consen 978 ERRLALELQEQLAKEA 993 (1259)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3 33335544455444
No 27
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.73 E-value=26 Score=31.43 Aligned_cols=102 Identities=27% Similarity=0.272 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHH
Q 009260 337 KRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEE--KLRMELEQKENEAESKLKNALELAK 414 (539)
Q Consensus 337 ~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~Ee--kL~~EL~~keeEa~~ql~~~eelak 414 (539)
++...+.|+..+..+|.-=......+.....-.++|-.+|+..++.|+.--++ .++.++.....++..--..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~---- 90 (132)
T PF07926_consen 15 LKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE---- 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44445667777777766666677777777888889999999999998873222 333333333333332211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009260 415 AEIAASIAREKVAQIEKMAEANLHINALC 443 (539)
Q Consensus 415 AEl~aaiA~EKA~qieki~ea~l~i~AL~ 443 (539)
+.-.....+|...-..+.+++.+|+-|.
T Consensus 91 -~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 91 -ESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223345677777778888888877664
No 28
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=85.42 E-value=32 Score=32.15 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
||.-..++-..+.+.|+++|.++|....
T Consensus 69 ~Ae~~~~eA~~~l~e~e~~L~~A~~ea~ 96 (184)
T PRK13455 69 EARALREEAQTLLASYERKQREVQEQAD 96 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666778889999998865433
No 29
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=85.17 E-value=39 Score=32.90 Aligned_cols=70 Identities=26% Similarity=0.298 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNAL 410 (539)
Q Consensus 341 kekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~e 410 (539)
+.+....|.++.....--.+.-+..+++|..-|.++..-+..-.+++.......++..+.++.+.+++++
T Consensus 86 ~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae 155 (204)
T PRK09174 86 RDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAE 155 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555533333222333334445555555555555444444444444445555555554444433
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.01 E-value=1.1e+02 Score=38.00 Aligned_cols=74 Identities=23% Similarity=0.216 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHhhhhhh-HH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 009260 311 VLDFLQAIHAAEQRQAELD-GR----AFAEEKRALKEKYEKELRDSRARELMRTEEAAILEK---ELKRERAKAAATIKS 382 (539)
Q Consensus 311 vld~~~AIhaAe~rQAe~D-A~----~f~Ee~r~lkekyEkELkdararElm~aeeaa~Ldk---ELk~erak~aaaiK~ 382 (539)
+=++.+|+.+|.+-|-.+- |. .--..-+.+-+|.+.+...+...----.+.+..|++ +||++.++.-++-|.
T Consensus 1565 ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~ 1644 (1758)
T KOG0994|consen 1565 AEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQ 1644 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4567788888877554321 11 011233444556666665554333333444455554 677766665444343
Q ss_pred HH
Q 009260 383 LQ 384 (539)
Q Consensus 383 lq 384 (539)
.+
T Consensus 1645 a~ 1646 (1758)
T KOG0994|consen 1645 AE 1646 (1758)
T ss_pred HH
Confidence 33
No 31
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.86 E-value=34 Score=40.59 Aligned_cols=98 Identities=23% Similarity=0.248 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHH--HHH
Q 009260 347 ELRDSRARELMRTEEAAIL----EKELKRERAKAAATIKSLQEKMEE--KLRMELEQKENEAESKLKNALELAKA--EIA 418 (539)
Q Consensus 347 ELkdararElm~aeeaa~L----dkELk~erak~aaaiK~lqe~~Ee--kL~~EL~~keeEa~~ql~~~eelakA--El~ 418 (539)
.|+.+|+|..-..++|.+. -++|+++++.-.-++++..-++|. +.+++|+.+--.+.+..+..++.-+- ++-
T Consensus 302 ~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~el 381 (1265)
T KOG0976|consen 302 TLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEEL 381 (1265)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5677788887777777653 468999999999999999988886 78889988888877766666555443 333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009260 419 ASIAREKVAQIEKMAEANLHINALCM 444 (539)
Q Consensus 419 aaiA~EKA~qieki~ea~l~i~AL~m 444 (539)
-.+-.+-|.+-++|.+++-+|=-|.|
T Consensus 382 qsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 382 QSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34445555555566666655544433
No 32
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=84.85 E-value=29 Score=31.09 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRARE 355 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararE 355 (539)
+|.-..++-..+.++|++.|.+++...
T Consensus 46 ~a~~~~~~a~~~~~e~~~~l~~a~~ea 72 (156)
T PRK05759 46 AAERAKKELELAQAKYEAQLAEARAEA 72 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777888888888885543
No 33
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=84.75 E-value=33 Score=31.80 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
+|.-..++-..+.+.|++.|.++|....
T Consensus 58 ~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 85 (173)
T PRK13460 58 KASELRLEAEALLKDYEARLNSAKDEAN 85 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667788899999999865443
No 34
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=83.96 E-value=68 Score=34.71 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCCCcc-----chhhHHHHHHHHHHHHhchhhhhhhhhhhccCcc
Q 009260 56 SNFSPI-----IFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSL 95 (539)
Q Consensus 56 s~~sK~-----~lG~~~V~~a~l~AYQ~GylDq~~~~~k~~~ss~ 95 (539)
+.+.|| ++||+++||+++.||+++|++.|+. +..|.++
T Consensus 2 ~~~~k~l~~~~l~~~~~ygG~v~yA~~n~~f~d~f~--~~vP~~e 44 (582)
T PF09731_consen 2 SSFRKFLLYTTLLGGVGYGGGVYYAKQNDNFRDFFE--EYVPYGE 44 (582)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHHH--HhCCcHH
Confidence 456673 4788899999999999999998887 6677664
No 35
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=83.66 E-value=45 Score=38.33 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009260 337 KRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALE 411 (539)
Q Consensus 337 ~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~ee 411 (539)
+...+..|++++..++.. .+++..+.++|+.+..+.....+.+.+++.++.+..+++...+++.-++++.+
T Consensus 520 L~~~~~~~e~~~~~~~~~----~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 520 LSALEKELEQKNEHLEKL----LKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344455544444222 12444444555555555544555555555555555555555555555544443
No 36
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=82.86 E-value=37 Score=30.87 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRARE 355 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdararE 355 (539)
|.-..++-..+.++|+++|.+++...
T Consensus 48 A~~~~~eA~~~~~e~~~~l~~a~~ea 73 (159)
T PRK13461 48 ADEDQKKARELKLKNERELKNAKEEG 73 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677888888888886543
No 37
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=82.72 E-value=44 Score=31.60 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=6.9
Q ss_pred HHHHhHHHHHHHHH
Q 009260 432 MAEANLHINALCMA 445 (539)
Q Consensus 432 i~ea~l~i~AL~mA 445 (539)
+.+++.....|+..
T Consensus 144 ~~~l~~~a~~lA~~ 157 (181)
T PRK13454 144 LESVEEVAKDTAEA 157 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555544
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.37 E-value=1.1e+02 Score=35.25 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=17.5
Q ss_pred HHHHHHHHHHH-HHHhHHHHHHHHHHhhccH
Q 009260 422 AREKVAQIEKM-AEANLHINALCMAFYARSE 451 (539)
Q Consensus 422 A~EKA~qieki-~ea~l~i~AL~mAfyarSe 451 (539)
++.....+.+. .|-+..++.|-+|+-+=-+
T Consensus 571 ~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 571 LESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34444555555 5555567778777765433
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.76 E-value=97 Score=37.45 Aligned_cols=65 Identities=35% Similarity=0.584 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA-AATIKSLQEKMEE------KLRMELEQK 398 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~-aaaiK~lqe~~Ee------kL~~EL~~k 398 (539)
|+.-=.++....+++|-.||.|.. .+=|.+-||||+-.|||.. .-.+-.++|+.++ -|+.|++.+
T Consensus 287 raR~e~keaqe~ke~~k~emad~a-----d~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 287 RARKEAKEAQEAKERYKEEMADTA-----DAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555666777777777762 2335567899999999887 7777777777765 455555443
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.55 E-value=1.1e+02 Score=34.67 Aligned_cols=127 Identities=25% Similarity=0.287 Sum_probs=66.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHH--hh----HHH-HHHHH-------HHHHHHH
Q 009260 317 AIHAAEQRQAELDGRAFAEEKRALKEKYE----------KELRDSRARE--LM----RTE-EAAIL-------EKELKRE 372 (539)
Q Consensus 317 AIhaAe~rQAe~DA~~f~Ee~r~lkekyE----------kELkdararE--lm----~ae-eaa~L-------dkELk~e 372 (539)
-.-.+.+.+++.|+ ..+++|.+.+..+ +||.++.+.. .| .+- +++.| .-+|+..
T Consensus 274 ~~~~~~~~~~e~e~--LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~ 351 (546)
T PF07888_consen 274 EETQAQQLQQENEA--LKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEG 351 (546)
T ss_pred hhhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34456677777776 4888888877654 5676663321 11 000 12222 3378888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009260 373 RAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELA--KAEIAASIAREKVAQIEKMAEANLHINALCMAF 446 (539)
Q Consensus 373 rak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eela--kAEl~aaiA~EKA~qieki~ea~l~i~AL~mAf 446 (539)
+++|+..+-.|+..+|. .+++++.+..|.++.=+-.+|-. .-.|..-|.+||-...=.+.|.+..|-=|-.++
T Consensus 352 ~~q~~qEk~~l~~~~e~-~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~l 426 (546)
T PF07888_consen 352 RSQWAQEKQALQHSAEA-DKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSL 426 (546)
T ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888764543 24444444333332211111111 112334445666655545555555555444433
No 41
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=80.27 E-value=51 Score=30.78 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRAR 354 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdarar 354 (539)
|.-..++...+.+.|++.|.+||.+
T Consensus 65 Ae~~~~ea~~~~~e~e~~L~~Ar~e 89 (167)
T PRK08475 65 IQEKLKESKEKKEDALKKLEEAKEK 89 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556667778888888887653
No 42
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=79.91 E-value=68 Score=31.99 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRARE 355 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdararE 355 (539)
|.-..++-..+.+.|+++|.+++.+.
T Consensus 48 Ae~~~~eA~~~~~e~e~~l~~a~~ea 73 (250)
T PRK14474 48 AEQRQQEAGQEAERYRQKQQSLEQQR 73 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677888999998885443
No 43
>PRK12705 hypothetical protein; Provisional
Probab=79.49 E-value=1.1e+02 Score=34.10 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009260 335 EEKRALKEKYEKELRDSRA 353 (539)
Q Consensus 335 Ee~r~lkekyEkELkdara 353 (539)
++...++.+.++|+++.|.
T Consensus 59 ~~~~~~~~~~e~e~~~~~~ 77 (508)
T PRK12705 59 ELLLRERNQQRQEARRERE 77 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666777777788777543
No 44
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=78.71 E-value=56 Score=30.31 Aligned_cols=28 Identities=4% Similarity=0.056 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
+|.-..++-..+.+.|++.|.++|....
T Consensus 61 ~A~~~~~ea~~~~~~~~~~L~~a~~ea~ 88 (174)
T PRK07352 61 EAEERLRQAAQALAEAQQKLAQAQQEAE 88 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888999999999865443
No 45
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=77.06 E-value=1.6e+02 Score=34.58 Aligned_cols=41 Identities=39% Similarity=0.480 Sum_probs=25.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 009260 321 AEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAA 363 (539)
Q Consensus 321 Ae~rQAe~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa 363 (539)
|..+||++=.+- -.|++.|.+.. +-|+.+-.++.|.-|--+
T Consensus 60 ~lsqqaelis~q-lqE~rrle~e~-~~lre~sl~qkmrLe~qa 100 (739)
T PF07111_consen 60 ALSQQAELISRQ-LQELRRLEEEV-RALRETSLQQKMRLEAQA 100 (739)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence 366888887763 35677777766 566666556666544333
No 46
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=76.98 E-value=54 Score=29.17 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRA 353 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdara 353 (539)
|.-..++-..+.+.|++.|.+|+.
T Consensus 38 A~~~~~ea~~~~~e~~~~l~~A~~ 61 (147)
T TIGR01144 38 AERAKKEAALAQKKAQVILKEAKD 61 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556677888888888864
No 47
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.43 E-value=17 Score=30.07 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=33.4
Q ss_pred hhhhhH-HHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 009260 325 QAELDG-RAFAEEKRALKEK---YEKELRDSRARELMRTEEAAILEKELKRE 372 (539)
Q Consensus 325 QAe~DA-~~f~Ee~r~lkek---yEkELkdararElm~aeeaa~LdkELk~e 372 (539)
+||+.| +++.|+|++.+.- ++..|+++..|-.-..++...|+++++.=
T Consensus 7 ~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 7 EAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555 4688888888875 47888888777766666666666666543
No 48
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=75.49 E-value=91 Score=31.11 Aligned_cols=9 Identities=11% Similarity=0.364 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 009260 343 KYEKELRDS 351 (539)
Q Consensus 343 kyEkELkda 351 (539)
+....|.+|
T Consensus 40 ~I~~~l~~A 48 (250)
T PRK14474 40 RIANRWQDA 48 (250)
T ss_pred HHHHHHHHH
Confidence 334444444
No 49
>PRK12704 phosphodiesterase; Provisional
Probab=75.43 E-value=1.4e+02 Score=33.10 Aligned_cols=17 Identities=47% Similarity=0.800 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009260 335 EEKRALKEKYEKELRDS 351 (539)
Q Consensus 335 Ee~r~lkekyEkELkda 351 (539)
++....+.+.++++++.
T Consensus 64 eE~~~~R~Ele~e~~~~ 80 (520)
T PRK12704 64 EEIHKLRNEFEKELRER 80 (520)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555555443
No 50
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=75.43 E-value=70 Score=29.71 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKME 388 (539)
Q Consensus 341 kekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~E 388 (539)
+++....|.+|.....--.+.-+..++.|..-+..+..-+..-++.++
T Consensus 51 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~ 98 (175)
T PRK14472 51 EKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAE 98 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554333322222233333444444444444444444333
No 51
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=74.52 E-value=99 Score=31.06 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHhchhhhhhh
Q 009260 64 GATVVVGVGLIAYQNGYLDQYID 86 (539)
Q Consensus 64 G~~~V~~a~l~AYQ~GylDq~~~ 86 (539)
||..|-|-.|+.|=.-|+|-+-.
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~ 23 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINS 23 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHT
T ss_pred CCcccccHHHHHHHHHHHHHHhC
Confidence 66777777766555555554443
No 52
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.74 E-value=1e+02 Score=30.91 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhccHH-HHHHHHHHHhhhhHhhHHHHHhcCCCcHHHHHHHHHhhcCCC
Q 009260 420 SIAREKVAQIEKMAEANLHINALCMAFYARSEE-ARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIE 494 (539)
Q Consensus 420 aiA~EKA~qieki~ea~l~i~AL~mAfyarSee-aRqSH~vHKLALGalALedAls~GaPI~~Evd~Lr~~l~Gid 494 (539)
.|-.||.++++.+...+..||.|...+-..-.+ .+--..+.++ ++-+ .|+..+||.+|...-|++
T Consensus 43 ~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~-~eey---------~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 43 ELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRL-YEEY---------KPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---------HHHHHHHHHHHHHHcCCC
Confidence 455899999999999999999999887433332 2222223222 2322 488899999999844543
No 53
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=72.14 E-value=1.7e+02 Score=32.62 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHH
Q 009260 343 KYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAE-SKLKNALELAKAEI 417 (539)
Q Consensus 343 kyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~-~ql~~~eelakAEl 417 (539)
.++.+|...|.+......+.+.|+..|+.++..+...+..|++ ++++|+.+.+.+-++.= .+-++..+..+..+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~-~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l 138 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMIN-SEQRLSEQFENLANRIFEHSNRRVDEQNRQSL 138 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554445555566777777777666555554444 77777777766655432 23334444444433
No 54
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=71.16 E-value=84 Score=28.79 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAAS 420 (539)
Q Consensus 341 kekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAEl~aa 420 (539)
+++....|.+|... .++|..+..|.+....++....+++-+.+.+.-+.+.++.-.+++.+..+..+-+++++.
T Consensus 55 ~~~I~~~l~~Ae~~----~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~-- 128 (156)
T CHL00118 55 KEYIRKNLTKASEI----LAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLE-- 128 (156)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34444555555322 334555566666666656555555555555555555555555666665555555555544
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 421 IAREKVAQIEKMAEANLHINALCMA 445 (539)
Q Consensus 421 iA~EKA~qieki~ea~l~i~AL~mA 445 (539)
.||..-++ +++.++..|...
T Consensus 129 --~ek~~a~~---~l~~~v~~lA~~ 148 (156)
T CHL00118 129 --AQKEKALK---SLEEQVDTLSDQ 148 (156)
T ss_pred --HHHHHHHH---HHHHHHHHHHHH
Confidence 44443333 344445444443
No 55
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=71.06 E-value=83 Score=28.65 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRAREL 356 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararEl 356 (539)
+|.-..++-..+.+.|+.+|.++|....
T Consensus 44 ~Ae~~~~eA~~~~~~~e~~L~~A~~ea~ 71 (159)
T PRK09173 44 EARRLREEAQQLLAEYQRKRKEAEKEAA 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667788999999999975544
No 56
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.68 E-value=2.1e+02 Score=34.37 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=7.4
Q ss_pred HHHHhhHHHHHHHHH
Q 009260 352 RARELMRTEEAAILE 366 (539)
Q Consensus 352 rarElm~aeeaa~Ld 366 (539)
+-||....|.-++|+
T Consensus 358 kererqEqErk~qlE 372 (1118)
T KOG1029|consen 358 KERERQEQERKAQLE 372 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 57
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=70.19 E-value=69 Score=27.40 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRARE 355 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararE 355 (539)
+|.....+-..+.+.|++.|.++|..-
T Consensus 41 ~a~~~~~ea~~~~~e~~~~l~~a~~ea 67 (132)
T PF00430_consen 41 EAEELKEEAEQLLAEYEEKLAEAREEA 67 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677788888888875543
No 58
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.99 E-value=1.2e+02 Score=30.21 Aligned_cols=32 Identities=28% Similarity=0.220 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhccHHHH
Q 009260 423 REKVAQIEKMAEANLHINALCMAFYARSEEAR 454 (539)
Q Consensus 423 ~EKA~qieki~ea~l~i~AL~mAfyarSeeaR 454 (539)
+||...-.++.++...|..|..+--.+..|++
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~ 106 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAE 106 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433333
No 59
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=68.83 E-value=1e+02 Score=28.83 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAAS 420 (539)
Q Consensus 341 kekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAEl~aa 420 (539)
+++....|.++.....--.+.-+..++.|+.-+.++..-+...+..++.-....+++..+++.+.+++++.-...|-..+
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a 134 (167)
T PRK08475 55 INKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKM 134 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555333332222233333444444444444444444444444444455555555555555555554444444
Q ss_pred HH
Q 009260 421 IA 422 (539)
Q Consensus 421 iA 422 (539)
+.
T Consensus 135 ~~ 136 (167)
T PRK08475 135 ER 136 (167)
T ss_pred HH
Confidence 43
No 60
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=68.71 E-value=1.2e+02 Score=29.50 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSR 352 (539)
Q Consensus 341 kekyEkELkdar 352 (539)
+++.++.|.+|.
T Consensus 81 ~~~I~~~L~~Ae 92 (205)
T PRK06231 81 KELIEAEINQAN 92 (205)
T ss_pred HHHHHHHHHHHH
Confidence 344555555553
No 61
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=68.08 E-value=1.3e+02 Score=29.63 Aligned_cols=9 Identities=44% Similarity=0.527 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 009260 343 KYEKELRDS 351 (539)
Q Consensus 343 kyEkELkda 351 (539)
+....|.+|
T Consensus 40 ~I~~~l~~A 48 (246)
T TIGR03321 40 KIAGELADA 48 (246)
T ss_pred HHHHHHHHH
Confidence 334444444
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=66.73 E-value=2.2e+02 Score=31.79 Aligned_cols=50 Identities=26% Similarity=0.256 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHhh--hhHhhHHHH
Q 009260 423 REKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLA--LGALALEDA 472 (539)
Q Consensus 423 ~EKA~qieki~ea~l~i~AL~mAfyarSeeaRqSH~vHKLA--LGalALedA 472 (539)
.+++..+++|.+++.+---..-|--+=.++-|+.-..-.|+ ++.+-|+|.
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~~ 141 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALKDLGLKDL 141 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 45556666666666654444444444456666666666555 666666653
No 63
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=66.31 E-value=99 Score=27.70 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009260 344 YEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNA 409 (539)
Q Consensus 344 yEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~ 409 (539)
..+.|.+|.....-..+.-+..++.|..-+.++..-+.+....++.-....+.+.++++++.++++
T Consensus 40 I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a 105 (156)
T PRK05759 40 IADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQA 105 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554443322333333333344334444444444444444433444444444444444433
No 64
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=66.08 E-value=1.1e+02 Score=27.97 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009260 341 KEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESK 405 (539)
Q Consensus 341 kekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~q 405 (539)
+.+..+.|.+|.....--.+..+..++.|..-+.++..-+..-...++.....-+.+...++++-
T Consensus 38 ~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~ 102 (159)
T PRK13461 38 QSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLI 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666433332223333333444444444444444444444444333344444444333
No 65
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=66.01 E-value=95 Score=27.40 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSRARE 355 (539)
Q Consensus 341 kekyEkELkdararE 355 (539)
+++....|.+|....
T Consensus 38 ~~~I~~~l~~Ae~~~ 52 (140)
T PRK07353 38 EDYIRTNRAEAKERL 52 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555554433
No 66
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=65.84 E-value=2.3e+02 Score=31.71 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=6.1
Q ss_pred cCCCchhhHH
Q 009260 305 SKDGKVVLDF 314 (539)
Q Consensus 305 s~DGKlvld~ 314 (539)
.++.|=|.|+
T Consensus 194 ~~~rk~m~D~ 203 (489)
T PF05262_consen 194 IDKRKDMVDI 203 (489)
T ss_pred hhhhhhhHHH
Confidence 3445667777
No 67
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=65.62 E-value=2e+02 Score=31.03 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009260 384 QEKMEEKLRMELEQKENEAESKLKNALELAKAEIA 418 (539)
Q Consensus 384 qe~~EekL~~EL~~keeEa~~ql~~~eelakAEl~ 418 (539)
.+++-++.+.|.++..+.++.++++-++.+..++-
T Consensus 84 ~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr 118 (445)
T PRK13428 84 AEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLR 118 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555566666666555555544443
No 68
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=64.61 E-value=91 Score=26.68 Aligned_cols=73 Identities=30% Similarity=0.333 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009260 342 EKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIA 418 (539)
Q Consensus 342 ekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAEl~ 418 (539)
++....+.++.. ..++|..+.++.+.....+......+-+.+......+.+++-.+++.++++.-+-+.+++.
T Consensus 33 ~~I~~~~~~a~~----~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~ 105 (132)
T PF00430_consen 33 AKIQSELEEAEE----LKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIE 105 (132)
T ss_dssp -HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555522 2234555555555555555555555555555555555555555666655555555544443
No 69
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=64.58 E-value=1.2e+02 Score=28.24 Aligned_cols=12 Identities=8% Similarity=0.457 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSR 352 (539)
Q Consensus 341 kekyEkELkdar 352 (539)
++...+.|.+|.
T Consensus 51 ~~~I~~~l~~Ae 62 (173)
T PRK13453 51 ERDINRDIDDAE 62 (173)
T ss_pred HHHHHHHHHHHH
Confidence 334445555553
No 70
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=64.50 E-value=2.4e+02 Score=34.31 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=23.9
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCccchhhHHH
Q 009260 29 ARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVV 68 (539)
Q Consensus 29 ~rk~fs~asq~~~s~~~gp~gkP~~Sgs~~sK~~lG~~~V 68 (539)
.||+|.|-..++.+=+|-=...|. .|.||+|-.+++
T Consensus 736 ~Rk~~rtrt~~~n~~npvy~eepf----vF~KVvLpeLA~ 771 (1189)
T KOG1265|consen 736 IRKEFRTRTVQGNSFNPVYEEEPF----VFRKVVLPELAS 771 (1189)
T ss_pred hhhhhhhccccCCCCCcccccCCc----ccceecccchhh
Confidence 356687777777777776666664 577887655543
No 71
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.44 E-value=69 Score=38.11 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHH-Hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 381 KSLQEKMEEKLRMELE-QK----ENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEA 435 (539)
Q Consensus 381 K~lqe~~EekL~~EL~-~k----eeEa~~ql~~~eelakAEl~aaiA~EKA~qieki~ea 435 (539)
+.-|+.-|-+|..|++ ++ ++|++++-..-+|..-++++-.||..-..||++-.-+
T Consensus 971 r~~qee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~D~~la~RlA~sd~~~v~d~~~~ 1030 (1259)
T KOG0163|consen 971 RKAQEEEERRLALELQEQLAKEAEEEAKRQNQLEQERRDHELALRLANSDGGQVEDSPPV 1030 (1259)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCccccccHH
Confidence 3334445556666666 33 4444444444456677788999998888888776654
No 72
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=64.28 E-value=1.2e+02 Score=28.17 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009260 343 KYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKN 408 (539)
Q Consensus 343 kyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~ 408 (539)
+-...|.+|...........+..+++|+.-|.+++.-+.+-..+++....+..++.+++..+.++.
T Consensus 41 ~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~ 106 (161)
T COG0711 41 KIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEA 106 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666444443333344445555555544444444444444444444444444444444433
No 73
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=64.00 E-value=1.1e+02 Score=27.29 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009260 341 KEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAES 404 (539)
Q Consensus 341 kekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ 404 (539)
+++..+.|.+|.....-..+.-+..++.|..-+..+..-+..-...++.-...-+.+.++++.+
T Consensus 28 ~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~ 91 (147)
T TIGR01144 28 QKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREK 91 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666654444333333333444444444444444444443433333333333333333
No 74
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=63.93 E-value=1.5e+02 Score=29.01 Aligned_cols=120 Identities=24% Similarity=0.273 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHH--HHHHHHHHHHHHHHH
Q 009260 356 LMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKN----ALELAK--AEIAASIAREKVAQI 429 (539)
Q Consensus 356 lm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~----~eelak--AEl~aaiA~EKA~qi 429 (539)
.+-.+.-..|++.|..|.-+...+.+.+|...++.+..=..+........... +.-|.. ..+...|..||..+.
T Consensus 37 ~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~ 116 (247)
T PF06705_consen 37 QDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERP 116 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456677899999999999999999999988885554444444433333322 222222 267788899999988
Q ss_pred HHHHH----HhHHHHHHHHHHh--hccHHHHHHHHHHHhhhhHhhHHHHHhc
Q 009260 430 EKMAE----ANLHINALCMAFY--ARSEEARKSYFAHKLALGALALEDALSR 475 (539)
Q Consensus 430 eki~e----a~l~i~AL~mAfy--arSeeaRqSH~vHKLALGalALedAls~ 475 (539)
..|.. +...|+.|.-+|. ..+-..|..+.+-+|.=-.+.+...+.+
T Consensus 117 ~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~ 168 (247)
T PF06705_consen 117 QDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEK 168 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765 5678889988884 5677788899999988777777776653
No 75
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=63.06 E-value=1.5e+02 Score=29.99 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhccHH--HHHHHHHHHhhhhHhhHHHHHh
Q 009260 437 LHINALCMAFYARSEE--ARKSYFAHKLALGALALEDALS 474 (539)
Q Consensus 437 l~i~AL~mAfyarSee--aRqSH~vHKLALGalALedAls 474 (539)
+++==.|-||-.+..- -...|..=|+=||-.-+.+.+.
T Consensus 190 l~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~ 229 (254)
T PF03194_consen 190 LEVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLK 229 (254)
T ss_pred ccchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHH
Confidence 3444567788877443 3578999999999988877664
No 76
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=63.02 E-value=1.7e+02 Score=33.94 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=4.8
Q ss_pred ccccccccCCC
Q 009260 276 HLRDKIDEGID 286 (539)
Q Consensus 276 ~L~d~~d~~~~ 286 (539)
.|=|++..+++
T Consensus 411 vLlDE~~~GtD 421 (782)
T PRK00409 411 VLFDELGAGTD 421 (782)
T ss_pred EEecCCCCCCC
Confidence 33444444444
No 77
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=62.12 E-value=1.1e+02 Score=26.79 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=22.0
Q ss_pred hhhhHhhHHHHHhcCCCcHHHHHHHHHhhcCCCCchHHH
Q 009260 462 LALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLD 500 (539)
Q Consensus 462 LALGalALedAls~GaPI~~Evd~Lr~~l~GidKDsll~ 500 (539)
.-|...+..-+...|+|+. |-.++-|.|-|.+..
T Consensus 68 ~e~~~~~~~~l~e~GLp~~-----l~~~l~g~d~e~~~~ 101 (125)
T PF14265_consen 68 RELRSEAKKVLAEKGLPAE-----LADFLVGDDEEETKA 101 (125)
T ss_pred HHHHHHHHHHHHHcCCCHH-----HHHHHhCCCHHHHHH
Confidence 3456677777888999987 333345766666543
No 78
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=60.61 E-value=4.3e+02 Score=34.32 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 009260 333 FAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRER 373 (539)
Q Consensus 333 f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~er 373 (539)
-.+-+++-+..-|.+|++...|-.-..++.+.|+++.+...
T Consensus 895 ~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~ 935 (1930)
T KOG0161|consen 895 LLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLE 935 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777777777776666666666666555544
No 79
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=58.62 E-value=3.7e+02 Score=31.74 Aligned_cols=79 Identities=28% Similarity=0.262 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHH
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEE--KLRMELEQKENEAESKL 406 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~Ee--kL~~EL~~keeEa~~ql 406 (539)
.|+.|..+.-...|+++-|+-..+....+...+...-++.+..=...-.++.+.+|+..++ -||.||.+..+...+.|
T Consensus 497 Sa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~al 576 (739)
T PF07111_consen 497 SARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERAL 576 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333222222222222233333334446677777776666 67777777766666555
Q ss_pred H
Q 009260 407 K 407 (539)
Q Consensus 407 ~ 407 (539)
.
T Consensus 577 q 577 (739)
T PF07111_consen 577 Q 577 (739)
T ss_pred H
Confidence 4
No 80
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=58.03 E-value=1.5e+02 Score=27.03 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=24.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 009260 396 EQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYA 448 (539)
Q Consensus 396 ~~keeEa~~ql~~~eelakAEl~aaiA~EKA~qieki~ea~l~i~AL~mAfya 448 (539)
.+.+.++++.+++++.-+..++..|.+.=+.....-..+++.+|+.|.-..+.
T Consensus 84 ~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~~~ 136 (141)
T PRK08476 84 AKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEALNA 136 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444444444444433333333333333333445566677776655443
No 81
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=57.95 E-value=2.2e+02 Score=29.40 Aligned_cols=9 Identities=22% Similarity=0.146 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 009260 439 INALCMAFY 447 (539)
Q Consensus 439 i~AL~mAfy 447 (539)
+|.++.+|+
T Consensus 135 tNv~n~~F~ 143 (314)
T PF04111_consen 135 TNVYNDTFH 143 (314)
T ss_dssp --TTTTT--
T ss_pred cCchhceee
Confidence 456677774
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=57.93 E-value=2e+02 Score=28.42 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=16.4
Q ss_pred HHHhcCCCcHHHHHHHHHhhcC
Q 009260 471 DALSRGLPIQKEIDTLYTYLDG 492 (539)
Q Consensus 471 dAls~GaPI~~Evd~Lr~~l~G 492 (539)
+-|.-=..|..||..-|++|+|
T Consensus 287 ~Ll~~K~~Ld~EIatYR~LLEg 308 (312)
T PF00038_consen 287 ELLDVKLALDAEIATYRKLLEG 308 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhHHHHHHHHHHHHhC
Confidence 3334444567899999999999
No 83
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=57.63 E-value=1.7e+02 Score=27.46 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 336 EKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKME 388 (539)
Q Consensus 336 e~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~E 388 (539)
.+..=+++....|.+|..+..--.+..+..++.|..-+.++..-+..-+.+++
T Consensus 55 ~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~ 107 (184)
T PRK13455 55 MLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQ 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666664333322222333333444444444444433333333
No 84
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=57.05 E-value=4.3e+02 Score=31.98 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhcCC
Q 009260 480 QKEIDTLYTYLDGI 493 (539)
Q Consensus 480 ~~Evd~Lr~~l~Gi 493 (539)
+++|..|.+-+.-|
T Consensus 777 ~~~i~~L~~~l~~i 790 (1201)
T PF12128_consen 777 KQEIEQLEKELKRI 790 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 85
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=56.01 E-value=2.3e+02 Score=28.58 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=13.6
Q ss_pred hhHhhhhcccccCCCc------hhhHHHHHHHHHHHh
Q 009260 294 NVMEELNNGYLSKDGK------VVLDFLQAIHAAEQR 324 (539)
Q Consensus 294 ~~~eel~~g~~s~DGK------lvld~~~AIhaAe~r 324 (539)
...+.+...|...=|| +.-.|+...+..+..
T Consensus 155 ~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ 191 (297)
T PF02841_consen 155 KELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENS 191 (297)
T ss_dssp HHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence 4455555555554343 222555554443333
No 86
>PRK00106 hypothetical protein; Provisional
Probab=55.44 E-value=3.5e+02 Score=30.51 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=24.9
Q ss_pred hcCCCcHHHHHH--HHHhhc--CCCC---chHHHHHHhcCchHHhhcCCcchHHhh
Q 009260 474 SRGLPIQKEIDT--LYTYLD--GIEK---DSVLDLVLSSLPEETRYHGTETLLQLN 522 (539)
Q Consensus 474 s~GaPI~~Evd~--Lr~~l~--GidK---Dsll~lalsSLPeea~~~Gt~T~lQL~ 522 (539)
|.=-|++.||.. |.+++. -|.. ..+++-+-..+.+...+.|-.++.+|.
T Consensus 271 S~fdpvRReiAr~~le~Li~dgrIhp~rIEe~v~k~~~e~~~~i~~~Ge~a~~~lg 326 (535)
T PRK00106 271 SGFDPIRREIARMTLESLIKDGRIHPARIEELVEKNRLEMDNRIREYGEAAAYEIG 326 (535)
T ss_pred eCCChHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333566666653 233321 1222 234455555566666666666666654
No 87
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=55.02 E-value=1.7e+02 Score=26.78 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 341 KEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLK 407 (539)
Q Consensus 341 kekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~ 407 (539)
+++..+.|.+|.....--.+.-+..++.|..-+.++..-+..-...++......+.....++++.++
T Consensus 41 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~ 107 (164)
T PRK14473 41 TRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKE 107 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666543332222222222333333344444444444444444444444444444444333
No 88
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=54.89 E-value=1.8e+02 Score=27.04 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEE 389 (539)
Q Consensus 341 kekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~Ee 389 (539)
+++..+.|.+|+....--.+..+..++.|..-+..+..-+..-+..++.
T Consensus 49 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~ 97 (173)
T PRK13460 49 ASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALK 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666543333222233333333444444444444444443333
No 89
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.88 E-value=3.3e+02 Score=30.08 Aligned_cols=15 Identities=13% Similarity=0.270 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHhh
Q 009260 311 VLDFLQAIHAAEQRQ 325 (539)
Q Consensus 311 vld~~~AIhaAe~rQ 325 (539)
..-++++|--+..++
T Consensus 148 ~ai~~~~l~~~~~~~ 162 (420)
T COG4942 148 LAIYYGALNPARAER 162 (420)
T ss_pred HHHHHHHhhHHHHHH
Confidence 334445554444433
No 90
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=54.05 E-value=2.3e+02 Score=28.01 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q 009260 336 EKRALKEKYEKELRDSRARELMR 358 (539)
Q Consensus 336 e~r~lkekyEkELkdararElm~ 358 (539)
+...+.+.|+..|.+||.+...-
T Consensus 34 ~~~~~~~~~~~~l~~Ar~eA~~I 56 (255)
T TIGR03825 34 ELADEEQEFEQILEKAEAEAAQI 56 (255)
T ss_pred chhhhhHHHHHHHHHHHHHHHHH
Confidence 34455678888888887665433
No 91
>PRK11637 AmiB activator; Provisional
Probab=53.78 E-value=2.9e+02 Score=29.08 Aligned_cols=8 Identities=13% Similarity=0.484 Sum_probs=3.8
Q ss_pred hHHHHHHH
Q 009260 312 LDFLQAIH 319 (539)
Q Consensus 312 ld~~~AIh 319 (539)
++|+..|.
T Consensus 158 ~~~l~~i~ 165 (428)
T PRK11637 158 LAYFGYLN 165 (428)
T ss_pred HHHHHHHH
Confidence 44455444
No 92
>PRK09039 hypothetical protein; Validated
Probab=53.76 E-value=2.8e+02 Score=28.97 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009260 360 EEAAILEKELKRERAKAAA 378 (539)
Q Consensus 360 eeaa~LdkELk~erak~aa 378 (539)
..++.|..+|..+++....
T Consensus 116 ~~~~~l~~~L~~~k~~~se 134 (343)
T PRK09039 116 GRAGELAQELDSEKQVSAR 134 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655543
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.33 E-value=2e+02 Score=29.81 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 009260 375 KAAATIKSL 383 (539)
Q Consensus 375 k~aaaiK~l 383 (539)
.....++.|
T Consensus 61 ~l~~eL~~L 69 (314)
T PF04111_consen 61 ELLQELEEL 69 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=52.84 E-value=2.3e+02 Score=27.67 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHH
Q 009260 316 QAIHAAEQRQAELD--GRAFAEEKRALKEKYEK 346 (539)
Q Consensus 316 ~AIhaAe~rQAe~D--A~~f~Ee~r~lkekyEk 346 (539)
-||.-.|.-++++. .+...++.|.|++.+.+
T Consensus 47 kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~ 79 (194)
T PF15619_consen 47 KALQKYEDTEAELPQLLQRHNEEVRVLRERLRK 79 (194)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777778877 55677788887776543
No 95
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=51.66 E-value=52 Score=30.08 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHH
Q 009260 376 AAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARK 455 (539)
Q Consensus 376 ~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAEl~aaiA~EKA~qieki~ea~l~i~AL~mAfyarSeeaRq 455 (539)
+..+++.+.+ |+.++.+.+..+..++.++.+-.++++ +...+.|..+...|.+.|++-. ++-.
T Consensus 5 a~~al~ki~~-----l~~~~~~i~~~~~~~I~~i~~~~~~~~--------~~l~~~i~~l~~~l~~y~e~~r--~e~~-- 67 (149)
T PF07352_consen 5 ADWALRKIAE-----LQREIARIEAEANDEIARIKEWYEAEI--------APLQNRIEYLEGLLQAYAEANR--DELT-- 67 (149)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHHHHCTH--HHH---
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHCH--Hhcc--
Confidence 3455666665 566777777777777766666664433 3444556666666666666522 2222
Q ss_pred HHHHHHhhhhHhhHHHHH
Q 009260 456 SYFAHKLALGALALEDAL 473 (539)
Q Consensus 456 SH~vHKLALGalALedAl 473 (539)
-....+|..|.+.+.-.-
T Consensus 68 k~Ks~~l~~G~v~~R~~~ 85 (149)
T PF07352_consen 68 KKKSLKLPFGTVGFRKST 85 (149)
T ss_dssp ----EE-SS-EE------
T ss_pred cceEEEcCCeeEEEEecC
Confidence 355577889999876443
No 96
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.91 E-value=4.1e+02 Score=29.99 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhccH
Q 009260 422 AREKVAQIEKMAEANLHINALCMAFYARSE 451 (539)
Q Consensus 422 A~EKA~qieki~ea~l~i~AL~mAfyarSe 451 (539)
...+-+.=++|.+++.+++-|-+=|.+..+
T Consensus 427 ~~~~~s~d~~I~dLqEQlrDlmf~le~qqk 456 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQEQLRDLMFFLEAQQK 456 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhHheehhhhhh
Confidence 344445556788888888888766655543
No 97
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=49.59 E-value=1.6e+02 Score=34.70 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009260 330 GRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKR 371 (539)
Q Consensus 330 A~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~ 371 (539)
-.+..|+..+|+..|.++|..|-. -.=..+...||.-|+.+
T Consensus 457 ~~~L~e~IeKLk~E~d~e~S~A~~-~~gLk~kL~~Lr~E~sK 497 (762)
T PLN03229 457 ELALNEMIEKLKKEIDLEYTEAVI-AMGLQERLENLREEFSK 497 (762)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHh
Confidence 356889999999999999998833 22234555666555554
No 98
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=48.70 E-value=6.5e+02 Score=31.63 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 342 EKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRME 394 (539)
Q Consensus 342 ekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~E 394 (539)
+.|+..|-+.++...-..+.-.....+++.+++.....|.+|++..+.+-.+.
T Consensus 594 e~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l 646 (1317)
T KOG0612|consen 594 EESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKEL 646 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 44555555555555555555555556666666666677777776555543333
No 99
>PRK11637 AmiB activator; Provisional
Probab=48.02 E-value=3.6e+02 Score=28.43 Aligned_cols=9 Identities=44% Similarity=0.283 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 009260 314 FLQAIHAAE 322 (539)
Q Consensus 314 ~~~AIhaAe 322 (539)
++..|-.+.
T Consensus 141 ~l~vLl~a~ 149 (428)
T PRK11637 141 GLQLILSGE 149 (428)
T ss_pred HHHHHhcCC
Confidence 344444433
No 100
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.01 E-value=4.8e+02 Score=29.01 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 009260 335 EEKRALKEKYEKELRD 350 (539)
Q Consensus 335 Ee~r~lkekyEkELkd 350 (539)
++.+..+.+.+++++.
T Consensus 58 eE~~~~R~Ele~el~~ 73 (514)
T TIGR03319 58 EEVHKLRAELERELKE 73 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444445444443
No 101
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=44.19 E-value=2.8e+02 Score=26.08 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 340 LKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEE 389 (539)
Q Consensus 340 lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~Ee 389 (539)
=++...+.|.+|.....--.+..+..++.|..-+..+...++.-+..++.
T Consensus 56 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~ 105 (184)
T CHL00019 56 RKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIER 105 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666543332222222223333333333344444444444433
No 102
>PRK00106 hypothetical protein; Provisional
Probab=44.10 E-value=5.2e+02 Score=29.21 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=13.9
Q ss_pred hhHHHHHhcCCCcHHHHHHHHH--hhcCC
Q 009260 467 LALEDALSRGLPIQKEIDTLYT--YLDGI 493 (539)
Q Consensus 467 lALedAls~GaPI~~Evd~Lr~--~l~Gi 493 (539)
+.|-+-=-+|-=|-.|=.++|. .+-|+
T Consensus 229 v~lp~demkGriIGreGrNir~~E~~tGv 257 (535)
T PRK00106 229 VHLPDDNMKGRIIGREGRNIRTLESLTGI 257 (535)
T ss_pred EEcCChHhhcceeCCCcchHHHHHHHhCc
Confidence 3344444456666666555554 24553
No 103
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.70 E-value=5.5e+02 Score=29.35 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=25.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009260 321 AEQRQAELDGRAFAEEKRALKEKYEKELRDS 351 (539)
Q Consensus 321 Ae~rQAe~DA~~f~Ee~r~lkekyEkELkda 351 (539)
+++-.+++|.--..+++..|+-+|++..+++
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3666778888888999999999999887665
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.79 E-value=3.9e+02 Score=27.38 Aligned_cols=89 Identities=26% Similarity=0.247 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHh
Q 009260 361 EAAILEKELKRERAKAAATIKSLQEKMEE--KLRMELEQKENEAESKLKNALELAK-AEIAASIARE-KVAQIEKMAEAN 436 (539)
Q Consensus 361 eaa~LdkELk~erak~aaaiK~lqe~~Ee--kL~~EL~~keeEa~~ql~~~eelak-AEl~aaiA~E-KA~qieki~ea~ 436 (539)
+...|..|+...+-+..+.-.++.+=++. +|..++.-+.+.-.++-..+.++-+ .+...+.+.+ .-....+.+++.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~ 169 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666555444444444444443332 5555555554444443333332222 2444444444 344455666666
Q ss_pred HHHHHHHHHHhhc
Q 009260 437 LHINALCMAFYAR 449 (539)
Q Consensus 437 l~i~AL~mAfyar 449 (539)
..|+.=-.+||-|
T Consensus 170 ~~l~~ell~~yer 182 (239)
T COG1579 170 EKLDPELLSEYER 182 (239)
T ss_pred HhcCHHHHHHHHH
Confidence 6666666666643
No 105
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=42.77 E-value=3.5e+02 Score=26.77 Aligned_cols=138 Identities=23% Similarity=0.272 Sum_probs=65.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHH
Q 009260 321 AEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA---AATIKSLQEKMEEK---LRME 394 (539)
Q Consensus 321 Ae~rQAe~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~---aaaiK~lqe~~Eek---L~~E 394 (539)
.++.+.+++...+..++..++.+|+.+++.- ..|. .+...|.|+|..+.+.. -..|..|++.+.-. ...|
T Consensus 68 ~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~---~~le-~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeE 143 (312)
T PF00038_consen 68 KEKARLELEIDNLKEELEDLRRKYEEELAER---KDLE-EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEE 143 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHH-HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4667778888888999999999999985433 3322 24555677777665544 33344444443321 1112
Q ss_pred HHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHhhhh
Q 009260 395 LEQKENEAE-SKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALG 465 (539)
Q Consensus 395 L~~keeEa~-~ql~~~eelakAEl~aaiA~EKA~qieki~ea~l~i~AL~mAfyarSeeaRqSH~vHKLALG 465 (539)
+..+..... .-...+......+|+.+|..=|+..-..+... ..-+...|..+-++.++.-..+.-++.
T Consensus 144 i~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~---~~e~e~~y~~k~~~l~~~~~~~~~~~~ 212 (312)
T PF00038_consen 144 IEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKN---REELEEWYQSKLEELRQQSEKSSEELE 212 (312)
T ss_dssp HHTTSTT----------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhh---hhhhhhhcccccccccccccccccccc
Confidence 222222111 00011222335577777765554443333222 233444555555555554444444333
No 106
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.59 E-value=4e+02 Score=32.68 Aligned_cols=76 Identities=30% Similarity=0.445 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009260 338 RALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATI------KSLQEKMEEKLRMELEQKENEAESKLKNALE 411 (539)
Q Consensus 338 r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaai------K~lqe~~EekL~~EL~~keeEa~~ql~~~ee 411 (539)
-.-....++||+++|. | +++|-.-..++++|-+.+|-+| |++.|...+-|+.|++-..|... .|+.=-|
T Consensus 275 m~qqa~Lqrel~raR~-e---~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~d-eletdlE 349 (1243)
T KOG0971|consen 275 MEQQADLQRELKRARK-E---AKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVD-ELETDLE 349 (1243)
T ss_pred HHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3344567888888753 2 3444444567788888887776 45556566679999887766543 3444445
Q ss_pred HHHHHHH
Q 009260 412 LAKAEIA 418 (539)
Q Consensus 412 lakAEl~ 418 (539)
+-||||.
T Consensus 350 ILKaEme 356 (1243)
T KOG0971|consen 350 ILKAEME 356 (1243)
T ss_pred HHHHHHH
Confidence 5566654
No 107
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=42.30 E-value=3.4e+02 Score=26.59 Aligned_cols=112 Identities=21% Similarity=0.340 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-
Q 009260 332 AFAEEKRALKEKYEKELRDSRARELM-----RTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESK- 405 (539)
Q Consensus 332 ~f~Ee~r~lkekyEkELkdararElm-----~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~q- 405 (539)
+|.++...+.+..++.+.+- ...+. ...+...|+..+..++.+.--.|..+...+...|.+=-.-.++|....
T Consensus 67 ~~e~~i~~~~~~v~~~~~~~-~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~ 145 (247)
T PF06705_consen 67 KFEEQINNMQERVENQISEK-QEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNERE 145 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666665542 22221 245556666677777776665555444433333222222222222222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 406 ------LKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMA 445 (539)
Q Consensus 406 ------l~~~eelakAEl~aaiA~EKA~qieki~ea~l~i~AL~mA 445 (539)
++++.+.. ..+...|-.||..+-..+.+++..|+.+|..
T Consensus 146 erE~~i~krl~e~~-~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~ 190 (247)
T PF06705_consen 146 EREENILKRLEEEE-NRLQEKIEKEKNTRESKLSELRSELEEVKRR 190 (247)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333 4678888999999999999999999999963
No 108
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=41.71 E-value=2.9e+02 Score=32.63 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHhhH-HHHHHHHHHHHHHHHHH
Q 009260 332 AFAEEKRALKEKYEKELRDS-----------------RARELMR-TEEAAILEKELKRERAK 375 (539)
Q Consensus 332 ~f~Ee~r~lkekyEkELkda-----------------rarElm~-aeeaa~LdkELk~erak 375 (539)
+.+|...+||+.|.|.|.++ |++-++. +..|+.|+.||++.-..
T Consensus 508 ~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e 569 (762)
T PLN03229 508 VLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKE 569 (762)
T ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHH
Confidence 36677778888888888775 2222222 23466777777654433
No 109
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=41.54 E-value=4.9e+02 Score=30.89 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009260 317 AIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKR 371 (539)
Q Consensus 317 AIhaAe~rQAe~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~ 371 (539)
-...+++..-+-+-.+..| +.|+++-+++++.+-..|--.+.+-+.|+|+.++
T Consensus 255 ~meEreK~R~erEr~~lee--Krlk~~~~~eek~~~keE~~kekee~Klekd~KK 307 (811)
T KOG4364|consen 255 NMEEREKERKERERQVLEE--KRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKK 307 (811)
T ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443322 2344444444444444444444444455554443
No 110
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=40.86 E-value=3.6e+02 Score=26.39 Aligned_cols=131 Identities=26% Similarity=0.308 Sum_probs=66.6
Q ss_pred hhhhcccccCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHHHH--HHHHhhHHHHHHHHHHHHHHH
Q 009260 297 EELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEK--ELRDS--RARELMRTEEAAILEKELKRE 372 (539)
Q Consensus 297 eel~~g~~s~DGKlvld~~~AIhaAe~rQAe~DA~~f~Ee~r~lkekyEk--ELkda--rarElm~aeeaa~LdkELk~e 372 (539)
+++..|... | +++.|+.....-.+=+.+-+.-.|..-.+.|.+==++ ..+.. |..+++ .|+..
T Consensus 38 e~~REg~A~--G-lm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL----------~lk~~ 104 (190)
T PF05266_consen 38 EELREGMAV--G-LMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLL----------SLKDD 104 (190)
T ss_pred HHhhhHHHH--H-HHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH----------HHHHh
Confidence 444444444 2 5667777777777777777777777776666532110 01111 222221 24555
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 373 RAKAAATIKSLQEKMEEK--LRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMA 445 (539)
Q Consensus 373 rak~aaaiK~lqe~~Eek--L~~EL~~keeEa~~ql~~~eelakAEl~aaiA~EKA~qieki~ea~l~i~AL~mA 445 (539)
+.+....+|.+..+++++ +..+++..-.+.++++.+.++-+ +.+.++|.+-..+|..++..+++|.-+
T Consensus 105 ~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~-----~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 105 QEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA-----AKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666554 22223333333344444444432 333455555556666666666666544
No 111
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=40.22 E-value=5.3e+02 Score=28.20 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 009260 337 KRALKEKYEKELRDS 351 (539)
Q Consensus 337 ~r~lkekyEkELkda 351 (539)
++.|+..-.++++..
T Consensus 103 lkQle~er~~a~e~q 117 (387)
T COG3064 103 LKQLEKERLKAQEQQ 117 (387)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 112
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=39.25 E-value=3.1e+02 Score=31.50 Aligned_cols=95 Identities=25% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 314 FLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRM 393 (539)
Q Consensus 314 ~~~AIhaAe~rQAe~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~ 393 (539)
|+++|.+ ++++. |++..+.=.....+++-+. +|.. -.++.+.....+-.++.++.++++
T Consensus 191 v~qsl~~------el~~i-~~~~q~~eqi~~~~~~~e~-kr~E-------------aerk~~~~qEe~Rqk~d~~~~~~e 249 (591)
T KOG2412|consen 191 VLQSLDT------ELQAI-QREKQRKEQIRERKERSEE-KREE-------------AERKRRAHQEELRQKEDEEAELQE 249 (591)
T ss_pred HHHHHHH------HHHHH-HHHHHHHHHHHHHHHHHHh-hhhh-------------hHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009260 394 ELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANL 437 (539)
Q Consensus 394 EL~~keeEa~~ql~~~eelakAEl~aaiA~EKA~qieki~ea~l 437 (539)
+=+-.-+|.+ +=++..+||.. ++|..|+.+-.+.++
T Consensus 250 qekiR~~eek----qeee~ke~e~~----~~k~~q~~~~~eek~ 285 (591)
T KOG2412|consen 250 QEKIRAEEEK----QEEERKEAEEQ----AEKEVQDPKAHEEKL 285 (591)
T ss_pred HHHHHHHHHH----HHHHHHHHHHH----HHHHhcCchhccccc
No 113
>PLN03086 PRLI-interacting factor K; Provisional
Probab=39.00 E-value=2.4e+02 Score=32.09 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009260 336 EKRALKEKYEKELRDSR 352 (539)
Q Consensus 336 e~r~lkekyEkELkdar 352 (539)
|||+..+|.++|+++-+
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (567)
T PLN03086 4 ELRRAREKLEREQRERK 20 (567)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46666666666666543
No 114
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=38.62 E-value=2.8e+02 Score=24.47 Aligned_cols=81 Identities=31% Similarity=0.409 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 009260 311 VLDFLQAIHAAEQRQAELDGRAFAEEKRALK-----EKYEKELRDSRARELMRTEEAAILEKELK--RERAKAAATIKSL 383 (539)
Q Consensus 311 vld~~~AIhaAe~rQAe~DA~~f~Ee~r~lk-----ekyEkELkdararElm~aeeaa~LdkELk--~erak~aaaiK~l 383 (539)
|-+.|+=|+++..+.|.+=.. |.+-.+... +.|.+-....=..=.-.-.+...+++.|. .++..+|..|+.+
T Consensus 1 ~~~Ll~~f~~~Qe~Ra~~Y~~-~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~l 79 (97)
T PF14966_consen 1 VRELLRRFFALQERRAQLYNR-FEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIREL 79 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 346778888888888877554 554444444 56666665542222233456677788887 8888999999999
Q ss_pred HHHHHHHHH
Q 009260 384 QEKMEEKLR 392 (539)
Q Consensus 384 qe~~EekL~ 392 (539)
|+.=.+||.
T Consensus 80 Q~~Ek~KL~ 88 (97)
T PF14966_consen 80 QEQEKEKLE 88 (97)
T ss_pred HHHHHHHHH
Confidence 996666664
No 115
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=38.37 E-value=7e+02 Score=29.07 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 009260 316 QAIHAAEQ 323 (539)
Q Consensus 316 ~AIhaAe~ 323 (539)
-||+-|++
T Consensus 484 ~a~~iA~~ 491 (771)
T TIGR01069 484 YAFEIAQR 491 (771)
T ss_pred HHHHHHHH
Confidence 45665553
No 116
>PLN03188 kinesin-12 family protein; Provisional
Probab=38.05 E-value=1.4e+02 Score=36.91 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=35.8
Q ss_pred hhhhccCccccccccccccccCCCCC-------CCCCCCC------------CCCCCCCCCccchhhHHHHHHHHHHHHh
Q 009260 18 QIIAQLPSIISARKEYSTASQKNVSP-------KPGPTGK------------PPESGSNFSPIIFGATVVVGVGLIAYQN 78 (539)
Q Consensus 18 ~~~~~~P~~Ls~rk~fs~asq~~~s~-------~~gp~gk------------P~~Sgs~~sK~~lG~~~V~~a~l~AYQ~ 78 (539)
|..+.+|.+=.+||-.-+++--.++| ..+|--- -.++...-+|+|+|-+=-.||- .|-
T Consensus 690 p~~s~sp~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~t~~laas---l~r 766 (1320)
T PLN03188 690 PTLSVSPRIRNSRKSLRTSSMLTASQKDSEDESKLTPEDAEPSFAKSMKNNSSSALSTQKSKSFLAPTEHLAAS---LHR 766 (1320)
T ss_pred CccccCCCcccchhhhhhhcccccccchhcccccccccccccchhhhhhcccccccccccccccCCchHHHHHH---Hhc
Confidence 55666787777777544444444443 1111111 1122344567777766554444 677
Q ss_pred chhhhhhhhhhhccCc
Q 009260 79 GYLDQYIDIEKEKHSS 94 (539)
Q Consensus 79 GylDq~~~~~k~~~ss 94 (539)
|. +.|| --.+|+
T Consensus 767 gl--~ii~--~h~~~~ 778 (1320)
T PLN03188 767 GL--EIID--SHRQSS 778 (1320)
T ss_pred ch--HHHh--hcccCc
Confidence 75 4555 444444
No 117
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=37.42 E-value=3.4e+02 Score=25.17 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 009260 340 LKEKYEKELRDSR 352 (539)
Q Consensus 340 lkekyEkELkdar 352 (539)
=+++....|.+|.
T Consensus 42 R~~~I~~~l~~Ae 54 (167)
T PRK14475 42 YAAKIQAELDEAQ 54 (167)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555553
No 118
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.92 E-value=58 Score=31.51 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009260 356 LMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEA 402 (539)
Q Consensus 356 lm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa 402 (539)
-+-.|+-++|+-|| .+...|.+ .-++||+|+..+..|.
T Consensus 10 N~AIERnalLE~EL--------dEKE~L~~-~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 10 NQAIERNALLESEL--------DEKENLRE-EVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHH-CH--------------
T ss_pred HHHHHHhHHHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34467888999998 12223333 3346666666555554
No 119
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=35.63 E-value=3e+02 Score=25.36 Aligned_cols=62 Identities=34% Similarity=0.389 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 009260 311 VLDFLQAIHAAEQRQAELDGRAFAEEKRALKEK---YEKELRDSRARELMRTEEAAILEKELKRERAKA 376 (539)
Q Consensus 311 vld~~~AIhaAe~rQAe~DA~~f~Ee~r~lkek---yEkELkdararElm~aeeaa~LdkELk~erak~ 376 (539)
||.||+- |-..=|.|-.+..-|+..|+.+ -|-|.|....--....-+..||+..|+.||+|.
T Consensus 5 Vl~fLQ~----Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 5 VLHFLQT----EWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888874 3333445555566666666654 466777666666667788899999999999985
No 120
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=34.95 E-value=3.1e+02 Score=24.65 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 381 KSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMA 445 (539)
Q Consensus 381 K~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAEl~aaiA~EKA~qieki~ea~l~i~AL~mA 445 (539)
..+.+++.+.++..+.+..+.+..+..+++.+....+..++.+=-...-++|.+++..|++|...
T Consensus 47 ~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~ 111 (118)
T TIGR01837 47 DESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQ 111 (118)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33444444555555555656665666677777777777666655455557777777778777654
No 121
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=34.81 E-value=4.7e+02 Score=25.96 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 009260 310 VVLDFLQAIHAAEQRQAE-LDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA-AATIKSLQEKM 387 (539)
Q Consensus 310 lvld~~~AIhaAe~rQAe-~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~-aaaiK~lqe~~ 387 (539)
++.+++...|+++-++-. +--.-=.|.++.|..+...+++++-.+.-|.. ..+.+|+.+-...- +..|+.|.+ +
T Consensus 45 kl~el~~e~Q~~QlK~LKe~~EkE~KElkK~L~~kr~e~I~~k~~~dK~e~---er~KrEin~s~I~e~V~~ikrL~~-~ 120 (185)
T PF08703_consen 45 KLEELARECQAAQLKKLKETCEKETKELKKKLDRKRLESIKEKKTKDKDEQ---ERLKREINRSHIQEVVQEIKRLEE-K 120 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHH---HHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHhhcccHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 356667777776543321 11111245555555555555553333333322 23445666665554 788888877 6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 388 EEKLRMELEQKENEAESKLKNALELAKAEIAASI 421 (539)
Q Consensus 388 EekL~~EL~~keeEa~~ql~~~eelakAEl~aai 421 (539)
-+|=+++|..+-.+.-++|+.-+--.++++.+..
T Consensus 121 qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~ey 154 (185)
T PF08703_consen 121 QEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEY 154 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888766666666555443
No 122
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=33.94 E-value=1.2e+03 Score=30.58 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHH
Q 009260 427 AQIEKMAEANLHINALCMAFYARSEEARKSYFA 459 (539)
Q Consensus 427 ~qieki~ea~l~i~AL~mAfyarSeeaRqSH~v 459 (539)
.+-.++.+++..++==.+.+.+..++.|+.|..
T Consensus 1157 k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~ 1189 (1930)
T KOG0161|consen 1157 KREAEVQKLRRDLEEETLDHEAQIEELRKKHAD 1189 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333455555555555556666666677777654
No 123
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=33.58 E-value=5e+02 Score=29.75 Aligned_cols=44 Identities=34% Similarity=0.348 Sum_probs=18.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 349 RDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRME 394 (539)
Q Consensus 349 kdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~E 394 (539)
.-||++|-----|-+.|.+|+-|||.-.-.--|+|+ +|.|||.-
T Consensus 517 dnar~qekQiq~Ek~ELkmd~lrerelreslekql~--~ErklR~~ 560 (641)
T KOG3915|consen 517 DNARAQEKQIQLEKTELKMDFLRERELRESLEKQLA--MERKLRAI 560 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 334444444444444444455444443333333333 24444443
No 124
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=33.36 E-value=2.6e+02 Score=23.62 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 419 ASIAREKVAQIEKMAEANLHINALCMA 445 (539)
Q Consensus 419 aaiA~EKA~qieki~ea~l~i~AL~mA 445 (539)
+++..|++..++++.-|+..|+||-.=
T Consensus 31 ~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 31 KTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999998643
No 125
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.96 E-value=4.4e+02 Score=27.91 Aligned_cols=74 Identities=28% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009260 338 RALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAE 416 (539)
Q Consensus 338 r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAE 416 (539)
.++..|-+..|..-..|..|+..|-+ ++|-.+.+-.-..+-+..+| ++|+.|.++|.+|..++-+.-++.-..|
T Consensus 101 ~kigkkK~aKleakqerr~qRe~E~~--eREeRk~ke~~eE~erKkdE---eR~~eEae~k~ee~~RkakEE~arkehe 174 (299)
T KOG3054|consen 101 AKIGKKKEAKLEAKQERRAQREAEEA--EREERKRKEDYEEAERKKDE---ERLAEEAELKEEEKERKAKEEEARKEHE 174 (299)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 126
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=32.86 E-value=5.4e+02 Score=30.55 Aligned_cols=18 Identities=44% Similarity=0.643 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009260 334 AEEKRALKEKYEKELRDS 351 (539)
Q Consensus 334 ~Ee~r~lkekyEkELkda 351 (539)
.+++++++++-.++--++
T Consensus 282 ~eek~~~keE~~kekee~ 299 (811)
T KOG4364|consen 282 KEEKKAIKEENNKEKEET 299 (811)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666655554444
No 127
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=32.67 E-value=2.1e+02 Score=25.80 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 332 AFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKM 387 (539)
Q Consensus 332 ~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~ 387 (539)
.|.+.=++-.+.|=++. ..|....|.+.|+.+...+..+|+.|++.+
T Consensus 53 ~f~krE~A~E~~Y~r~~---------EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 53 AFGKREAAQEEQYFRKK---------EKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHhhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 48887777777776553 335556677788888888888888887754
No 128
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=32.62 E-value=7.7e+02 Score=27.86 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=36.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009260 352 RARELMRTEEAAILEKELKRERAKA---AATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKA 415 (539)
Q Consensus 352 rarElm~aeeaa~LdkELk~erak~---aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakA 415 (539)
-|-|-|.+..-..+++||++-+--. -+-+++-++..+ -++.||+-+.++-+++--..--|++|
T Consensus 385 SAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelq-svqRELeVLSEQYSQKCLEnahLaqa 450 (593)
T KOG4807|consen 385 SAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQ-SVQRELEVLSEQYSQKCLENAHLAQA 450 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566655555666665544221 234455555443 46778888888888765544444444
No 129
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=32.48 E-value=4.1e+02 Score=24.67 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSRA 353 (539)
Q Consensus 341 kekyEkELkdara 353 (539)
+++..+.|.+|..
T Consensus 52 ~~~I~~~l~~A~~ 64 (174)
T PRK07352 52 REAILQALKEAEE 64 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 4455556666543
No 130
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=31.24 E-value=4.8e+02 Score=25.08 Aligned_cols=26 Identities=38% Similarity=0.790 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 324 RQAELDGRAFAEEKRALKEKYEKELRDSR 352 (539)
Q Consensus 324 rQAe~DA~~f~Ee~r~lkekyEkELkdar 352 (539)
+++.++|. ++...++..|++|++.-|
T Consensus 52 ke~~~eak---ee~~~~r~~~E~E~~~~~ 77 (201)
T PF12072_consen 52 KEAELEAK---EEAQKLRQELERELKERR 77 (201)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444444 666777778888887653
No 131
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=31.03 E-value=4.5e+02 Score=31.09 Aligned_cols=132 Identities=24% Similarity=0.316 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 342 EKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASI 421 (539)
Q Consensus 342 ekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAEl~aai 421 (539)
-.||+.++++ .++|+.=. +.---|+..||...---+|+-...|. -||+.+..|+-|..+.++++--.++|+-
T Consensus 198 ~e~E~K~R~s--e~l~qevn-~~kv~e~~~erlqye~klkstk~e~a-~L~Eq~~eK~~e~~rl~~~lv~~~~~d~---- 269 (861)
T KOG1899|consen 198 NETEKKLRLS--ENLMQEVN-QSKVGEVVQERLQYETKLKSTKGEMA-PLREQRSEKNDEEMRLLRTLVQRLMADG---- 269 (861)
T ss_pred hhHHHHHHhH--HHHHHHHH-HHHHHHHHHHHHHHHhhcccccchhh-hHHHHHhhhhhHHHHHHHHHHHHHhhcc----
Confidence 3466666665 34444333 22233555555555444444433332 3566666666666666665544443321
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHhhhhHhhHHHHHhcCCCcHHHHHHHHHhhcCCCCchHHHH
Q 009260 422 AREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDL 501 (539)
Q Consensus 422 A~EKA~qieki~ea~l~i~AL~mAfyarSeeaRqSH~vHKLALGalALedAls~GaPI~~Evd~Lr~~l~GidKDsll~l 501 (539)
.+|--+++.|. + |+|..|.+-.--..=|+.||.|+..+||--=|-.
T Consensus 270 -e~~~~rd~~lk------~---------------------------a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~ 315 (861)
T KOG1899|consen 270 -EHKSLRDNTLK------N---------------------------ALESLMRANEQKDRFIESLRNYLNNYDKNAQIVR 315 (861)
T ss_pred -cchhhHHHHHH------H---------------------------HHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 23333333222 2 3455555554444557778888888888777777
Q ss_pred HHhcCchHHhhcCC
Q 009260 502 VLSSLPEETRYHGT 515 (539)
Q Consensus 502 alsSLPeea~~~Gt 515 (539)
++.-=|.+...|.+
T Consensus 316 i~qg~~~~~~s~~e 329 (861)
T KOG1899|consen 316 ILQGEPSDSMSHSE 329 (861)
T ss_pred hhcCCCcccccccc
Confidence 77666666655543
No 132
>PF14772 NYD-SP28: Sperm tail
Probab=31.01 E-value=3.5e+02 Score=23.30 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=55.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 320 AAEQRQAELDGRAFAEEKRALKEKYEKELRDS---------RARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEK 390 (539)
Q Consensus 320 aAe~rQAe~DA~~f~Ee~r~lkekyEkELkda---------rarElm~aeeaa~LdkELk~erak~aaaiK~lqe~~Eek 390 (539)
.+.+|+.+.+. .+.++++.+.|.+.+ +=+..|.......|.++|+.-+.....-|..-.. +=..
T Consensus 8 E~~RR~~e~~~------~~~~~~kl~~E~~~s~~~~~~I~~~W~~i~~~~~~~eL~~~ie~q~~~~e~ii~~Kd~-lI~~ 80 (104)
T PF14772_consen 8 EEERRREEEEL------RQERREKLEEEEKESRANFEKINERWREILRKKKPQELRKEIEEQKQACERIIDRKDA-LIKE 80 (104)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34455544443 456666677666665 4456677777778888888888877777776655 5567
Q ss_pred HHHHHHHhHHHHHHHHH
Q 009260 391 LRMELEQKENEAESKLK 407 (539)
Q Consensus 391 L~~EL~~keeEa~~ql~ 407 (539)
|+.+|+.++++-..-++
T Consensus 81 L~~eL~~~deqy~~~lr 97 (104)
T PF14772_consen 81 LQQELKEADEQYVKALR 97 (104)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88889888888766555
No 133
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=30.60 E-value=4.3e+02 Score=24.23 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 009260 343 KYEKELRDS 351 (539)
Q Consensus 343 kyEkELkda 351 (539)
+....|.+|
T Consensus 43 ~I~~~l~~A 51 (164)
T PRK14471 43 SIKNALASA 51 (164)
T ss_pred HHHHHHHHH
Confidence 344444444
No 134
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=30.45 E-value=6.3e+02 Score=26.14 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 368 ELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAK--AEIAASIAREKVAQIEKMAEANLHINALCMA 445 (539)
Q Consensus 368 ELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelak--AEl~aaiA~EKA~qieki~ea~l~i~AL~mA 445 (539)
+|+++|..-...+|+....+-.+|-.++.... ....+---.++|.| --+...|......|-.=|.+++.--..++-.
T Consensus 202 ~lk~eR~~~~~~Lk~~~dDI~~~ll~~~~~~~-~~~~e~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~ 280 (339)
T cd09235 202 TIKAEREVIESELKSATFDMKSKFLSALAQDG-AINEEAISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFSKE 280 (339)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHhcC-CccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777778877763211 00000001112222 1233344455555544444444333444445
Q ss_pred HhhccHHHHHHHHHHHhhhhHhhHHHHHh
Q 009260 446 FYARSEEARKSYFAHKLALGALALEDALS 474 (539)
Q Consensus 446 fyarSeeaRqSH~vHKLALGalALedAls 474 (539)
+-.++.....-..+++|..+-.++.+-.+
T Consensus 281 ~~~~~~~~~re~~lq~L~~Ay~~y~el~~ 309 (339)
T cd09235 281 KQSNSGANEREEVLKDLAAAYDAFMELTA 309 (339)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555533444678888888777766443
No 135
>PLN03086 PRLI-interacting factor K; Provisional
Probab=29.84 E-value=3.8e+02 Score=30.60 Aligned_cols=8 Identities=38% Similarity=0.659 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 009260 365 LEKELKRE 372 (539)
Q Consensus 365 LdkELk~e 372 (539)
|++|.+.+
T Consensus 12 ~~~~~~~~ 19 (567)
T PLN03086 12 LEREQRER 19 (567)
T ss_pred HHHHHHHH
Confidence 34444433
No 136
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=29.61 E-value=5.2e+02 Score=24.94 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=40.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 323 QRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKS 382 (539)
Q Consensus 323 ~rQAe~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~ 382 (539)
+|-.+.=..|+......|...++..|.++|.|+.-.-.+-..|++-|...+-+.-.|-+.
T Consensus 39 rRvee~r~~me~~v~~ele~ek~~~l~e~r~keEeer~~~eELe~ileen~rkvEEAQrk 98 (149)
T PF15346_consen 39 RRVEEERKKMEKQVAEELEREKEEALEEARRKEEEERKKREELEKILEENRRKVEEAQRK 98 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456788888888888888888888888766666666777776666666444333
No 137
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=29.49 E-value=4.7e+02 Score=24.40 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009260 334 AEEKRALKEKYEKELRDSRAR 354 (539)
Q Consensus 334 ~Ee~r~lkekyEkELkdarar 354 (539)
.+-+...+.++++-+.+|+.+
T Consensus 9 ~~il~~A~~ea~~il~~A~~~ 29 (198)
T PRK03963 9 QEINREAEQKIEYILEEAQKE 29 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666544
No 138
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.39 E-value=1.1e+03 Score=28.65 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=22.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009260 322 EQRQAELDGRAFAEEKRALKEKYEKELRDSRAR 354 (539)
Q Consensus 322 e~rQAe~DA~~f~Ee~r~lkekyEkELkdarar 354 (539)
+-.|++.+..-...++..++.+++..++..+.+
T Consensus 650 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 682 (1201)
T PF12128_consen 650 ELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ 682 (1201)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777666443
No 139
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=29.06 E-value=5.1e+02 Score=24.68 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 009260 421 IAREKVAQIEKMAE 434 (539)
Q Consensus 421 iA~EKA~qieki~e 434 (539)
|..||..-+.++..
T Consensus 109 Ie~Ek~~Al~elr~ 122 (154)
T PRK06568 109 IQNQKSTASKELQD 122 (154)
T ss_pred HHHHHHHHHHHHHH
Confidence 34666665555544
No 140
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=29.05 E-value=8.7e+02 Score=27.34 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 009260 67 VVVGVGLIAY 76 (539)
Q Consensus 67 ~V~~a~l~AY 76 (539)
.|.|-+++||
T Consensus 87 Iiagyl~~ay 96 (489)
T PF05262_consen 87 IIAGYLEAAY 96 (489)
T ss_pred HHHHHHHHhc
Confidence 3445555555
No 141
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=29.05 E-value=5.6e+02 Score=25.10 Aligned_cols=87 Identities=24% Similarity=0.339 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHH--HHHHHHHH------HHHHHHHHHHHH-HH
Q 009260 361 EAAILEKELKRERAKAAATIKSLQEKM--EEKLRMELEQKENEAESKLK--NALELAKA------EIAASIAREKVA-QI 429 (539)
Q Consensus 361 eaa~LdkELk~erak~aaaiK~lqe~~--EekL~~EL~~keeEa~~ql~--~~eelakA------El~aaiA~EKA~-qi 429 (539)
|..+|-|-|+||+...-.++..++.++ |+.=.+.|..|=++.+.++- +-+.+-.. +|...|++-|.. +-
T Consensus 39 eieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ei~c~kqed~LngKe~~I~eLk~~l~sQK~~~Hk 118 (153)
T PF15175_consen 39 EIEILSKQLEREKLAFEKALGSVKSKVLQESSKKDQLITKCNEIESEIICHKQEDILNGKENEIKELKQRLASQKQNFHK 118 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccchHHHHhhhHHHHHHHhh
Confidence 567899999999999988888888764 45667777777777665444 22222222 555666666666 34
Q ss_pred HHHHHHhHHHHHHHHHHhhc
Q 009260 430 EKMAEANLHINALCMAFYAR 449 (539)
Q Consensus 430 eki~ea~l~i~AL~mAfyar 449 (539)
..|...+ |..---+|.+|
T Consensus 119 ~qlsdl~--Iqk~Qe~Y~a~ 136 (153)
T PF15175_consen 119 RQLSDLR--IQKQQERYMAT 136 (153)
T ss_pred ccchhhH--HhhHHHHHHHH
Confidence 4444333 33333344333
No 142
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=29.00 E-value=1e+03 Score=29.11 Aligned_cols=8 Identities=25% Similarity=0.646 Sum_probs=3.4
Q ss_pred HHHhcCCC
Q 009260 471 DALSRGLP 478 (539)
Q Consensus 471 dAls~GaP 478 (539)
|-+-.|.|
T Consensus 602 ~~~r~~~~ 609 (1021)
T PTZ00266 602 DSMRSGVH 609 (1021)
T ss_pred hhhhcccc
Confidence 33444444
No 143
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.84 E-value=3.3e+02 Score=30.82 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhhhHhhHHHHHhcCCCcHHHHHHHHHhhcCCCCchHHHHHHhcCchHHhhcCCc
Q 009260 437 LHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTE 516 (539)
Q Consensus 437 l~i~AL~mAfyarSeeaRqSH~vHKLALGalALedAls~GaPI~~Evd~Lr~~l~GidKDsll~lalsSLPeea~~~Gt~ 516 (539)
.+.++...-..+|+-..+-||++=++.+----|+ -+|.||..+=+.||.-|.- |+. -.+=
T Consensus 370 ~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr---~~G~~L~~~EE~Lr~Kldt-----ll~--~ln~---------- 429 (508)
T KOG3091|consen 370 HHADAVAKIEEAKNRHVELSHRILRVMIKQEILR---KRGYALTPDEEELRAKLDT-----LLA--QLNA---------- 429 (508)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCcCCccHHHHHHHHHH-----HHH--HhcC----------
Confidence 3444444444556667777999999876554444 4789999888888887755 221 1122
Q ss_pred chHHhhhccccccchhhcc
Q 009260 517 TLLQLNQKPTREREKKRIN 535 (539)
Q Consensus 517 T~lQL~qkF~~~K~~~r~~ 535 (539)
|-||+.+.+.+++-+|+-
T Consensus 430 -Pnq~k~Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 430 -PNQLKARLDELYEILRMQ 447 (508)
T ss_pred -hHHHHHHHHHHHHHHHhh
Confidence 289999999999988874
No 144
>PRK10780 periplasmic chaperone; Provisional
Probab=28.73 E-value=4.8e+02 Score=24.19 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Q 009260 336 EKRALKEKYEKELRDSRAR-ELMRTEEAAILEKEL 369 (539)
Q Consensus 336 e~r~lkekyEkELkdarar-Elm~aeeaa~LdkEL 369 (539)
++..+...|+++..+.+.. ..|...+...+++||
T Consensus 58 el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el 92 (165)
T PRK10780 58 ELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDV 92 (165)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHH
Confidence 3333334444333333222 233444444444444
No 145
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.49 E-value=8.3e+02 Score=26.89 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCch----HHHHHHhcCchHHhhcCCcchHHhhhccccccchhh
Q 009260 483 IDTLYTYLDGIEKDS----VLDLVLSSLPEETRYHGTETLLQLNQKPTREREKKR 533 (539)
Q Consensus 483 vd~Lr~~l~GidKDs----ll~lalsSLPeea~~~Gt~T~lQL~qkF~~~K~~~r 533 (539)
...|+.|+.++|-|| -|+--+..+-.-.+.|| +|+.+|.+....++..+.
T Consensus 286 ~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg-~s~e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 286 TRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYG-ASVEEVLEYAEKIKEELD 339 (563)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHH
Confidence 345788888888887 34455666777778888 478888777776665543
No 146
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.05 E-value=4.3e+02 Score=23.49 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009260 334 AEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELA 413 (539)
Q Consensus 334 ~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eela 413 (539)
.-..+.+.++++++.+..+.+=.-...+...+.++|...+......-+.-.++.=.++..+|++......+++...+.-.
T Consensus 31 ~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~ 110 (158)
T PF03938_consen 31 SPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQEL 110 (158)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 009260 414 KAEIAASI 421 (539)
Q Consensus 414 kAEl~aai 421 (539)
-..+...|
T Consensus 111 ~~~i~~~i 118 (158)
T PF03938_consen 111 LQPIQKKI 118 (158)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 147
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.77 E-value=7e+02 Score=25.81 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=31.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHh
Q 009260 390 KLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAE-------ANLHINALCMAFY 447 (539)
Q Consensus 390 kL~~EL~~keeEa~~ql~~~eelakAEl~aaiA~EKA~qieki~e-------a~l~i~AL~mAfy 447 (539)
.-+.++....++++..|.+++-+-.+ -..||-.=+...|.+|.. +..=++|+|.-|.
T Consensus 68 ~~~~ei~~~~~~a~~~L~~a~P~L~~-A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~ 131 (344)
T PF12777_consen 68 KQAKEIEEIKEEAEEELAEAEPALEE-AQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLG 131 (344)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHh
Confidence 34556666667777766655533221 111223334455666654 3467889998875
No 148
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=27.66 E-value=3.4e+02 Score=26.78 Aligned_cols=10 Identities=40% Similarity=0.591 Sum_probs=0.0
Q ss_pred cccCCCchhh
Q 009260 303 YLSKDGKVVL 312 (539)
Q Consensus 303 ~~s~DGKlvl 312 (539)
+++.-|=.+|
T Consensus 32 ~L~~yGWyil 41 (190)
T PF06936_consen 32 FLSSYGWYIL 41 (190)
T ss_dssp ----------
T ss_pred HHHHhCHHHH
Confidence 4555554444
No 149
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.62 E-value=5.9e+02 Score=24.91 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009260 332 AFAEEKRALKEKYEKELRDSR 352 (539)
Q Consensus 332 ~f~Ee~r~lkekyEkELkdar 352 (539)
++.+.+..+...++++|+..|
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k 156 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLK 156 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577888888899999998874
No 150
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=27.38 E-value=4e+02 Score=22.84 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 009260 338 RALKEKYEKELRDSR 352 (539)
Q Consensus 338 r~lkekyEkELkdar 352 (539)
...+....+-|++||
T Consensus 21 ~~Ar~~r~~~lk~Ak 35 (105)
T PF03179_consen 21 EEARKEREQRLKQAK 35 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455555553
No 151
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=27.13 E-value=67 Score=33.62 Aligned_cols=58 Identities=16% Similarity=0.004 Sum_probs=38.6
Q ss_pred cCccccccccccccccCCCC--CCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhchhh
Q 009260 23 LPSIISARKEYSTASQKNVS--PKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLD 82 (539)
Q Consensus 23 ~P~~Ls~rk~fs~asq~~~s--~~~gp~gkP~~Sgs~~sK~~lG~~~V~~a~l~AYQ~GylD 82 (539)
.++++..+..|..+-+++.- .++.+.++|.++|..-.+-++++.++++++.+||- |++
T Consensus 36 ~~~~~~~~~~s~~~~~p~~~~~~~~~~~~~~~r~gp~~w~~~~~t~Alg~~~~g~~~--Y~~ 95 (280)
T KOG2792|consen 36 GKRLLETNGLSPLARSPVDRSQGGPIESGKPGRPGPFSWRSLLATFALGLGLGGALA--YLK 95 (280)
T ss_pred cceeeccCCCCCccCCCcchhcCCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHH--HHH
Confidence 34444555555544444432 36777888888877777777888888888887774 566
No 152
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.07 E-value=9.3e+02 Score=27.01 Aligned_cols=129 Identities=22% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHH----------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HH----HHHHHHHHHHHH
Q 009260 318 IHAAE----------QRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEK--EL----KRERAKAAATIK 381 (539)
Q Consensus 318 IhaAe----------~rQAe~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~Ldk--EL----k~erak~aaaiK 381 (539)
+.+.+ +.+.+.++. |.+.+...+-..+++++..+ +.--++.+.|+. .+ .+|.+--...++
T Consensus 49 ~~~~~~~A~~~~~~kkel~~~~~q-~~~~k~~~~~~~~eqi~~~~---~~~q~e~~~~~~~~~~N~e~dke~~~le~~L~ 124 (438)
T COG4487 49 KEANEKRAQYRSAKKKELSQLEEQ-LINQKKEQKNLFNEQIKQFE---LALQDEIAKLEALELLNLEKDKELELLEKELD 124 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHH
Q 009260 382 SLQEKMEEKLRMELEQKENEAESKLKNALELAKA--EIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKS 456 (539)
Q Consensus 382 ~lqe~~EekL~~EL~~keeEa~~ql~~~eelakA--El~aaiA~EKA~qieki~ea~l~i~AL~mAfyarSeeaRqS 456 (539)
+++.+...-|+..++-.+-+....=.+.....+. .+-..|..+|.-.-.++.++|+.|+ |..++++|+|
T Consensus 125 ~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~~~~e------~~e~~e~~~s 195 (438)
T COG4487 125 ELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLE------FKENEEQRES 195 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHH
No 153
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.01 E-value=7.4e+02 Score=25.84 Aligned_cols=68 Identities=29% Similarity=0.409 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHH
Q 009260 346 KELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEE------KLRMELEQKENEAESKLKNALELA 413 (539)
Q Consensus 346 kELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~Ee------kL~~EL~~keeEa~~ql~~~eela 413 (539)
-+|++.|.+.+-..=+....++-|+.-.......+.+.+.++.. .|-..|++|.-|-++.-+.++-|.
T Consensus 144 ~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 144 VELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777666677777777776666666666666665544 455556666666666555544444
No 154
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=26.93 E-value=8e+02 Score=26.21 Aligned_cols=106 Identities=22% Similarity=0.233 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009260 327 ELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKL 406 (539)
Q Consensus 327 e~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql 406 (539)
++-..+|.+-|-.|+..-| +|..-.+. -|.+.+..|+..++-+..-+---.-=.-+..+.+...|++-...|-+.+.
T Consensus 34 elkeq~yk~kLa~Lq~~Le-el~~g~~~--eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~ 110 (291)
T KOG4466|consen 34 ELKEQMYKDKLAQLQAQLE-ELGQGTAP--EYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKK 110 (291)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666655554433 12221122 23445555666655444333222223345555566666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009260 407 KNALELAKAEIAASIAREKVAQIEKMAEANLHINALC 443 (539)
Q Consensus 407 ~~~eelakAEl~aaiA~EKA~qieki~ea~l~i~AL~ 443 (539)
+.+-+--.+++. ..|.+|-|.++-|+-=+
T Consensus 111 ~lLke~l~sele--------eKkrkieeeR~smDlts 139 (291)
T KOG4466|consen 111 KLLKENLISELE--------EKKRKIEEERLSMDLTS 139 (291)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHhhhhhcc
Confidence 544444433332 34555666666665443
No 155
>PRK10824 glutaredoxin-4; Provisional
Probab=26.92 E-value=28 Score=31.32 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=27.5
Q ss_pred CCCCccchhhHHHHHH--HHHHHHhchhhhhhh
Q 009260 56 SNFSPIIFGATVVVGV--GLIAYQNGYLDQYID 86 (539)
Q Consensus 56 s~~sK~~lG~~~V~~a--~l~AYQ~GylDq~~~ 86 (539)
..+|-+||||-.|||. +++.++.|-|+..+.
T Consensus 69 ~TVPQIFI~G~~IGG~ddl~~l~~~G~L~~lL~ 101 (115)
T PRK10824 69 PTFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 101 (115)
T ss_pred CCCCeEEECCEEEcChHHHHHHHHCCCHHHHHH
Confidence 4799999999999998 699999999997665
No 156
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.91 E-value=9.8e+02 Score=29.03 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 009260 323 QRQAELDGRAFAEEKRALKEKYEKELRDS------RARELMRTEEAAILEKELKRERAKAAATIKSLQEK---------- 386 (539)
Q Consensus 323 ~rQAe~DA~~f~Ee~r~lkekyEkELkda------rarElm~aeeaa~LdkELk~erak~aaaiK~lqe~---------- 386 (539)
+.|-++|++ ++++-++-..++.+- ...+||++-|||+.+=|=+.-+-|++...++|.++
T Consensus 931 kqqq~le~~-----lkrm~~~~k~ema~iErecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlKDqYflqRhqlL~ 1005 (1187)
T KOG0579|consen 931 KQQQNLEAM-----LKRMAEKHKEEMASIERECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQYFLQRHQLLA 1005 (1187)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009260 387 MEEKLRMELEQKENEAESKLKNALELAKAEI 417 (539)
Q Consensus 387 ~EekL~~EL~~keeEa~~ql~~~eelakAEl 417 (539)
.-+|=.+.+++-..+-..+|+..+-.-+|.|
T Consensus 1006 rHekE~eQmqrynQr~ie~Lk~rqtqerarL 1036 (1187)
T KOG0579|consen 1006 RHEKEMEQMQRYNQREIEDLKRRQTQERARL 1036 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 157
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=26.58 E-value=7e+02 Score=28.03 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=45.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009260 323 QRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEA 402 (539)
Q Consensus 323 ~rQAe~DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa 402 (539)
++.-++|.. |.+.+..++..|+.=. +.+..+|+-|..=-.+...-+..+=+.++.|+....+++.+..
T Consensus 419 ~~~~~~~~~-f~~~~~~l~~~~~~l~-----------~~~~~~d~tl~~~~e~~~~~~~~ql~~Le~k~~~a~~rk~~~~ 486 (542)
T PF10079_consen 419 QDPSEIEDD-FEEEKEQLEAQFEPLK-----------EKAAKIDPTLEGLVEKNESKILKQLDYLEKKLLKAEKRKHETA 486 (542)
T ss_pred cccccHHHH-HHHHHHHHHHHHHHHH-----------HHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444445554 8888888888876532 2345555555544444433333334447778888888887777
Q ss_pred HHHHHHHH
Q 009260 403 ESKLKNAL 410 (539)
Q Consensus 403 ~~ql~~~e 410 (539)
-+|+.+++
T Consensus 487 l~q~~~l~ 494 (542)
T PF10079_consen 487 LRQLDRLE 494 (542)
T ss_pred HHHHHHHH
Confidence 66666554
No 158
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.02 E-value=1.1e+03 Score=29.49 Aligned_cols=81 Identities=26% Similarity=0.403 Sum_probs=50.3
Q ss_pred hhHhhhhcccccCCCchhhHHHHHHHHHHHhhhhhhHHHHHH-------HHHHHH--HHHHHHHHHHHHHHhhHHHHHHH
Q 009260 294 NVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAE-------EKRALK--EKYEKELRDSRARELMRTEEAAI 364 (539)
Q Consensus 294 ~~~eel~~g~~s~DGKlvld~~~AIhaAe~rQAe~DA~~f~E-------e~r~lk--ekyEkELkdararElm~aeeaa~ 364 (539)
.+-+.+-.|+...+| +- ||.=|.++- .+.|+. ++..|. =.|+++ +|++.|=.+....+..
T Consensus 750 ~ved~if~~f~~~ig------v~-ir~Yee~~~---~~~~a~k~~ef~~q~~~l~~~l~fe~~-~d~~~~ve~~~~~v~~ 818 (1141)
T KOG0018|consen 750 KVEDRIFKGFCRRIG------VR-IREYEEREL---QQEFAKKRLEFENQKAKLENQLDFEKQ-KDTQRRVERWERSVED 818 (1141)
T ss_pred HHHHHHHHHhhhhcC------ee-eehHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhheec-ccHHHHHHHHHHHHHH
Confidence 334455568888888 12 554444333 344443 333332 346777 8888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009260 365 LEKELKRERAKAAATIKSLQE 385 (539)
Q Consensus 365 LdkELk~erak~aaaiK~lqe 385 (539)
+++|++.-.-+..++.|.+.+
T Consensus 819 ~~~~~~~~~~~e~~~~k~i~e 839 (1141)
T KOG0018|consen 819 LEKEIEGLKKDEEAAEKIIAE 839 (1141)
T ss_pred HHHhHHhhHHHHHHHHHHHhh
Confidence 999887766555555555554
No 159
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=25.52 E-value=3.7e+02 Score=23.98 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 009260 342 EKYEKELRDSRARELMRTEEAAILEKELKRER 373 (539)
Q Consensus 342 ekyEkELkdararElm~aeeaa~LdkELk~er 373 (539)
.+|++.+++...+-.-...+...|.++|..++
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444333444444444444443
No 160
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.39 E-value=9.7e+02 Score=26.66 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 009260 344 YEKELRD 350 (539)
Q Consensus 344 yEkELkd 350 (539)
|...|--
T Consensus 151 ~~~~l~~ 157 (420)
T COG4942 151 YYGALNP 157 (420)
T ss_pred HHHHhhH
Confidence 3333333
No 161
>PLN03188 kinesin-12 family protein; Provisional
Probab=25.20 E-value=1.5e+03 Score=28.80 Aligned_cols=32 Identities=34% Similarity=0.404 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHH
Q 009260 412 LAKAEIAASIAREKVAQIEK-MAEANLHINALC 443 (539)
Q Consensus 412 lakAEl~aaiA~EKA~qiek-i~ea~l~i~AL~ 443 (539)
|..||-++.+|.+|++.+++ ...++.+|+-|-
T Consensus 1206 l~eaeea~~~a~~r~~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188 1206 LKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999988775 344566666553
No 162
>PRK10869 recombination and repair protein; Provisional
Probab=25.19 E-value=9.8e+02 Score=26.64 Aligned_cols=53 Identities=30% Similarity=0.310 Sum_probs=34.1
Q ss_pred cHHHHHHHHHhhcCCCCchH----HHHHHhcCchHHhhcCCcchHHhhhccccccchh
Q 009260 479 IQKEIDTLYTYLDGIEKDSV----LDLVLSSLPEETRYHGTETLLQLNQKPTREREKK 532 (539)
Q Consensus 479 I~~Evd~Lr~~l~GidKDsl----l~lalsSLPeea~~~Gt~T~lQL~qkF~~~K~~~ 532 (539)
|+.-.+.|+.|+++++-||- |+-=|.-|-.=.+.|| +|+.++-..+..++.++
T Consensus 277 l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg-~~~~~~~~~~~~l~~eL 333 (553)
T PRK10869 277 IQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHH-VSPEELPQHHQQLLEEQ 333 (553)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 55566788899999888872 3333444445567788 46777766655555443
No 163
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.60 E-value=1.1e+03 Score=27.05 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=21.8
Q ss_pred HHHhhhhhhHHHHH----HHHHHHHHHHHHHHHHHH
Q 009260 321 AEQRQAELDGRAFA----EEKRALKEKYEKELRDSR 352 (539)
Q Consensus 321 Ae~rQAe~DA~~f~----Ee~r~lkekyEkELkdar 352 (539)
|+.|--+.|.-.|. -+.--++..|+-||..+|
T Consensus 63 aqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar 98 (546)
T KOG0977|consen 63 AQNRKLEHDINLLRGVVGRETSGIKAKYEAELATAR 98 (546)
T ss_pred HHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHH
Confidence 44555555555443 455678999999999984
No 164
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=24.53 E-value=5.4e+02 Score=23.43 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 009260 341 KEKYEKELRDSR 352 (539)
Q Consensus 341 kekyEkELkdar 352 (539)
+++....|.+|.
T Consensus 35 ~~~I~~~l~~Ae 46 (159)
T PRK09173 35 ADRIKNELAEAR 46 (159)
T ss_pred HHHHHHHHHHHH
Confidence 344444455553
No 165
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=23.88 E-value=5.4e+02 Score=23.26 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=15.4
Q ss_pred HHhhhhhhHHHHH---HHHHHHHHHHHHHHH
Q 009260 322 EQRQAELDGRAFA---EEKRALKEKYEKELR 349 (539)
Q Consensus 322 e~rQAe~DA~~f~---Ee~r~lkekyEkELk 349 (539)
++-.|.=|-|++. |+|++|+++.++|..
T Consensus 56 krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~ 86 (100)
T PF04568_consen 56 KREAAQEEQYFRKKEKEQLKKLKEKLKEEIE 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666554 455566666655443
No 166
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=23.66 E-value=1.1e+02 Score=30.07 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHHHHhch
Q 009260 62 IFGATVVVGVGLIAYQNGY 80 (539)
Q Consensus 62 ~lG~~~V~~a~l~AYQ~Gy 80 (539)
||||.|++-++||-..++|
T Consensus 163 FiGGIVL~LGv~aI~ff~~ 181 (186)
T PF05283_consen 163 FIGGIVLTLGVLAIIFFLY 181 (186)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 5888888888888777777
No 167
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=23.22 E-value=5.3e+02 Score=26.57 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=11.6
Q ss_pred CcchhhhhhccccccccCC
Q 009260 267 SPASLLDAYHLRDKIDEGI 285 (539)
Q Consensus 267 ~~~SLle~Y~L~d~~d~~~ 285 (539)
..+.+++.-|+.|-+...+
T Consensus 187 ~~~~~l~~i~~TDq~~~~p 205 (321)
T PF07946_consen 187 KAGDYLEYIHFTDQPSGKP 205 (321)
T ss_pred hhhhheeEEEEECCCCCCC
Confidence 3456667777777665543
No 168
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=22.85 E-value=1.1e+03 Score=26.32 Aligned_cols=17 Identities=35% Similarity=0.759 Sum_probs=12.3
Q ss_pred HHHhHHHHHHHHHHhhc
Q 009260 433 AEANLHINALCMAFYAR 449 (539)
Q Consensus 433 ~ea~l~i~AL~mAfyar 449 (539)
.|-+-=++-=||.||+|
T Consensus 83 eECkpCL~~tCm~FYt~ 99 (436)
T PF01093_consen 83 EECKPCLKQTCMRFYTR 99 (436)
T ss_pred HHHHHHHHHHhHHHHhc
Confidence 45555566679999994
No 169
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=22.63 E-value=8e+02 Score=24.71 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHH
Q 009260 312 LDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDS---RARELMRTEEAAILEKELKRERA 374 (539)
Q Consensus 312 ld~~~AIhaAe~rQAe~DA~~f~Ee~r~lkekyEkELkda---rarElm~aeeaa~LdkELk~era 374 (539)
=|+.+-|..-+.|||.-|-..|+|-++-- -.|-.-.|++ |.|-+..-+.|. +.|.+-|+
T Consensus 87 ae~~ek~~~l~~r~A~~d~l~L~e~L~~Y-~r~~~A~K~~l~rR~ral~~~q~A~---k~L~KaR~ 148 (219)
T cd07621 87 AETFEKLRKLEGRVASDEDLKLSDTLRYY-MRDTQAAKDLLYRRLRCLANYENAN---KNLEKARA 148 (219)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHh
Confidence 46677788889999999999999987631 1111122222 566655555554 55555554
No 170
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=22.56 E-value=1.9e+02 Score=26.65 Aligned_cols=45 Identities=22% Similarity=0.142 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 009260 329 DGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRER 373 (539)
Q Consensus 329 DA~~f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~er 373 (539)
|...+.|+...+.+-.|+.+.++.-++.|..+..++||.++-|.-
T Consensus 81 d~ae~~edid~~~~~l~~~~~~~~~~~~~~r~~~~~le~~~~~~~ 125 (131)
T PRK06228 81 RNAIGGTDLGELREAVEQEFLTLDERERSVRSALAKLESGFIRRF 125 (131)
T ss_pred ceeEchhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344466666667777777788888888888888888887765543
No 171
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=22.21 E-value=6.5e+02 Score=23.54 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 009260 312 LDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDS-RARELMRTEEAAILEKELKRERAKAAATIKS---LQEKM 387 (539)
Q Consensus 312 ld~~~AIhaAe~rQAe~DA~~f~Ee~r~lkekyEkELkda-rarElm~aeeaa~LdkELk~erak~aaaiK~---lqe~~ 387 (539)
=+.++.|..+..+|+..|...|.+-++-.- .|=.-+|++ +.|..+..+.- .+.++|.+-++.......+ -.+++
T Consensus 88 ~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~-~~~~svk~~l~~R~~~~~~~~-~a~~~l~kkk~~~~kl~~~~~~~~~k~ 165 (236)
T PF09325_consen 88 AEAFEKISELLEEQANQEEETLGEPLREYL-RYIESVKEALNRRDKKLIEYQ-NAEKELQKKKAQLEKLKASGKNRQDKV 165 (236)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccchhhhHHH
Confidence 356666777788888888888888766432 233344444 33333332222 3444554444433221111 12222
Q ss_pred HHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHH
Q 009260 388 EEKLRM---ELEQKENEAESKLKNALELAKAEIA 418 (539)
Q Consensus 388 EekL~~---EL~~keeEa~~ql~~~eelakAEl~ 418 (539)
+ .+.. ++++.-+.++.+.+.+.+..+.|+.
T Consensus 166 ~-~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~ 198 (236)
T PF09325_consen 166 E-QAENEIEEAERRVEQAKDEFEEISENIKKELE 198 (236)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1222 2333334455555555555555554
No 172
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.01 E-value=4e+02 Score=29.96 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 009260 363 AILEKELKRE 372 (539)
Q Consensus 363 a~LdkELk~e 372 (539)
+.|+|+|+..
T Consensus 79 sELEKqLaaL 88 (475)
T PRK13729 79 AQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 173
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=21.74 E-value=41 Score=28.66 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=27.4
Q ss_pred CCCCccchhhHHHHHH--HHHHHHhchhhhhhh
Q 009260 56 SNFSPIIFGATVVVGV--GLIAYQNGYLDQYID 86 (539)
Q Consensus 56 s~~sK~~lG~~~V~~a--~l~AYQ~GylDq~~~ 86 (539)
..+|-+|+|+-.|||. +++.++.|-|..++.
T Consensus 60 ~tvP~Vfi~g~~iGG~ddl~~l~~~G~L~~~l~ 92 (99)
T TIGR02189 60 PAVPAVFVGGKLVGGLENVMALHISGSLVPMLK 92 (99)
T ss_pred CCcCeEEECCEEEcCHHHHHHHHHcCCHHHHHH
Confidence 3788899999999998 699999999998775
No 174
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.38 E-value=3.1e+02 Score=31.86 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHhhhhHhhHHHHHhcCCCcHHHHHHHHHhhcCC
Q 009260 422 AREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGI 493 (539)
Q Consensus 422 A~EKA~qieki~ea~l~i~AL~mAfyarSeeaRqSH~vHKLALGalALedAls~GaPI~~Evd~Lr~~l~Gi 493 (539)
+..|+..+.+|+.++..++.||.+.--++--.+ -.....-||...+..|..+++|+
T Consensus 60 ~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~----------------~~~k~e~tLke~l~~l~~~le~l 115 (660)
T KOG4302|consen 60 SESKARLLQEIAVIEAELNDLCSALGEPSIIGE----------------ISDKIEGTLKEQLESLKPYLEGL 115 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc----------------cccccCccHHHHHHHHHHHHHHH
Confidence 589999999999999999999999654432222 12223338888888888888774
No 175
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=21.17 E-value=94 Score=32.52 Aligned_cols=19 Identities=37% Similarity=0.298 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHhhhhh
Q 009260 310 VVLDFLQAIHAAEQRQAEL 328 (539)
Q Consensus 310 lvld~~~AIhaAe~rQAe~ 328 (539)
|-|-+..|.-|+-+|+.++
T Consensus 277 LrL~L~~AqlAlL~~~~~~ 295 (372)
T PF04375_consen 277 LRLRLEQAQLALLRRDQEL 295 (372)
T ss_pred HHHHHHHHHHHHHhcCHHH
Confidence 4566677777777776543
No 176
>PHA01746 hypothetical protein
Probab=21.06 E-value=53 Score=30.81 Aligned_cols=50 Identities=24% Similarity=0.344 Sum_probs=32.6
Q ss_pred cccCCCCCCCCCC--CCCCCCCCCCCccc------hhhHHHHHHHHHHHHhchhhhhhh
Q 009260 36 ASQKNVSPKPGPT--GKPPESGSNFSPII------FGATVVVGVGLIAYQNGYLDQYID 86 (539)
Q Consensus 36 asq~~~s~~~gp~--gkP~~Sgs~~sK~~------lG~~~V~~a~l~AYQ~GylDq~~~ 86 (539)
.-|-|++|..|.. .-.--|.+|+.|-+ -|.++..+-||-- +.||||.|+.
T Consensus 35 vlQiNAvP~dg~vr~SMTiHs~nNfkKQIGiTa~DAgdL~lIa~FLeK-YS~~LnkYVk 92 (131)
T PHA01746 35 VVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAGDLKLIAEFLEK-YSDFLNEYVK 92 (131)
T ss_pred EEEeeccCCCCeeEEEEEEecccchhhhcCCCccchhhHHHHHHHHHH-HHHHHHHHee
Confidence 3456666655554 33445677777774 4556666666654 4799999987
No 177
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=20.58 E-value=2e+02 Score=26.85 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=12.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 009260 353 ARELMRTEEAAILEKELKRERA 374 (539)
Q Consensus 353 arElm~aeeaa~LdkELk~era 374 (539)
.|+-+|.|..+.|+.||+.=..
T Consensus 17 ~Rd~lY~e~l~~L~~el~~l~~ 38 (205)
T PF08598_consen 17 LRDQLYRERLAQLQQELEQLQE 38 (205)
T ss_dssp HHHHHHHHHHHHHHHCHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4555666666666666654443
No 178
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.25 E-value=4.4e+02 Score=29.71 Aligned_cols=120 Identities=27% Similarity=0.303 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHH-HHHH
Q 009260 340 LKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNAL-ELA-KAEI 417 (539)
Q Consensus 340 lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~e-ela-kAEl 417 (539)
-.++-++|+++++-+ +-+..+---|++|.++.+-. +.-++++---|+ |=-+||+-|--++++.+..++ +.- +|+.
T Consensus 115 ~~e~~erEv~~l~~l-lsr~~~~~~Lenem~ka~Ed-~eKlrelv~pme-keI~elk~kl~~aE~~i~El~k~~~h~a~s 191 (542)
T KOG0993|consen 115 NEEKLEREVKALMEL-LSRGQYQLDLENEMDKAKED-EEKLRELVTPME-KEINELKKKLAKAEQRIDELSKAKHHKAES 191 (542)
T ss_pred HHHHHHHHHHHHHHH-HhccchhhhhHHHHHHHHhh-HHHHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHhhhcccchH
Confidence 345666677766322 21223333344433322111 222333333332 334667777777777666555 111 1221
Q ss_pred H------HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHhhhh
Q 009260 418 A------ASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALG 465 (539)
Q Consensus 418 ~------aaiA~EKA~qieki~ea~l~i~AL~mAfyarSeeaRqSH~vHKLALG 465 (539)
. --++++|-.+++.+.++.-.----+-+| |.|.. .|-++...+||
T Consensus 192 lh~~t~lL~L~RD~s~~l~~leel~gd~gps~d~F-a~s~d--~s~slqs~tLG 242 (542)
T KOG0993|consen 192 LHVFTDLLNLARDKSEQLRQLEELDGDAGPSGDDF-AQSTD--TSGSLQSKTLG 242 (542)
T ss_pred HHHHHHHHHHhcCCchhhhHHHHhccCCCCCcchh-hhccc--cccchhhhccc
Confidence 1 1256777666666666652111111333 55555 56677777777
No 179
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=20.07 E-value=9.9e+02 Score=24.83 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=16.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHhh
Q 009260 469 LEDALSRGLPIQKEIDTLYTYL 490 (539)
Q Consensus 469 LedAls~GaPI~~Evd~Lr~~l 490 (539)
|.+.|.+|.|+-+-+|||-+=+
T Consensus 232 f~~~L~~~~~vGrkLDFL~QEm 253 (291)
T TIGR00255 232 FYNILKKGEAVGRKLDFMMQEL 253 (291)
T ss_pred HHHHHhcCCCcCcchhHHHHHH
Confidence 4566778889999999975543
Done!