Query 009260
Match_columns 539
No_of_seqs 19 out of 21
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 22:28:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 91.7 3.5 0.00012 51.9 17.4 110 394-503 1991-2113(3245)
2 3vkg_A Dynein heavy chain, cyt 82.3 38 0.0013 43.1 18.4 86 416-511 2077-2172(3245)
3 3oja_B Anopheles plasmodium-re 82.1 16 0.00055 36.8 12.7 10 451-460 586-595 (597)
4 3na7_A HP0958; flagellar bioge 73.6 61 0.0021 30.4 16.0 13 361-373 91-103 (256)
5 2i1j_A Moesin; FERM, coiled-co 70.7 15 0.00053 38.8 9.3 153 302-457 268-439 (575)
6 1f5n_A Interferon-induced guan 68.8 1.3E+02 0.0044 32.2 16.3 31 296-326 419-451 (592)
7 2dfs_A Myosin-5A; myosin-V, in 62.7 95 0.0033 35.4 14.1 10 378-387 984-993 (1080)
8 1f5n_A Interferon-induced guan 59.4 1.9E+02 0.0063 31.0 14.9 53 331-383 434-503 (592)
9 2v71_A Nuclear distribution pr 48.8 1.8E+02 0.0061 27.5 18.3 79 333-412 36-114 (189)
10 3oja_B Anopheles plasmodium-re 46.2 2.4E+02 0.0083 28.3 15.1 9 335-343 463-471 (597)
11 2b5u_A Colicin E3; high resolu 44.4 2.9E+02 0.01 30.0 13.3 10 480-489 401-410 (551)
12 1wt6_A Myotonin-protein kinase 40.5 72 0.0025 27.0 6.5 12 391-402 57-68 (81)
13 2zuo_A MVP, major vault protei 40.1 4.7E+02 0.016 29.9 17.0 12 25-36 174-185 (861)
14 2khk_A ATP synthase subunit B; 37.2 43 0.0015 24.2 4.2 22 333-354 21-42 (53)
15 2q2f_A Selenoprotein S; anti-p 36.3 46 0.0016 28.6 4.8 45 303-347 34-81 (89)
16 2zuo_A MVP, major vault protei 33.0 6.1E+02 0.021 29.0 19.0 10 464-473 822-831 (861)
17 3mq9_A Bone marrow stromal ant 30.3 4E+02 0.014 26.2 17.8 15 337-351 375-389 (471)
18 2p2u_A HOST-nuclease inhibitor 30.2 3.1E+02 0.011 24.8 10.1 127 376-526 18-158 (171)
19 3mq7_A Bone marrow stromal ant 29.4 3.1E+02 0.011 24.6 13.5 82 334-423 20-110 (121)
20 2fxo_A Myosin heavy chain, car 28.6 2.8E+02 0.0096 23.8 16.6 30 416-445 97-126 (129)
21 3s4r_A Vimentin; alpha-helix, 25.1 2.9E+02 0.01 22.9 10.4 74 296-388 11-87 (93)
22 2ve7_A Kinetochore protein HEC 23.6 1.3E+02 0.0045 29.5 6.3 9 309-317 145-153 (315)
23 3mq9_A Bone marrow stromal ant 22.8 5.5E+02 0.019 25.2 13.2 56 390-445 397-458 (471)
24 1wlq_A Geminin; coiled-coil; 2 22.4 3.6E+02 0.012 22.9 8.1 15 390-404 42-56 (83)
25 2gyq_A YCFI, putative structur 21.1 2.8E+02 0.0095 25.2 7.5 59 339-415 12-71 (173)
26 2dfs_A Myosin-5A; myosin-V, in 21.0 9.7E+02 0.033 27.4 17.7 26 345-370 976-1001(1080)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.73 E-value=3.5 Score=51.86 Aligned_cols=110 Identities=17% Similarity=0.148 Sum_probs=59.5
Q ss_pred HHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHhhhh
Q 009260 394 ELEQKENEAESKLKNAL-------ELAKAEIAASIAREKVAQI-EKMAEANLHINALCMAFYARSEEARKSYFAHKLALG 465 (539)
Q Consensus 394 EL~~keeEa~~ql~~~e-------elakAEl~aaiA~EKA~qi-eki~ea~l~i~AL~mAfyarSeeaRqSH~vHKLALG 465 (539)
+++....+++..|.+|+ ++++||-..+.|.++...+ +++++++.+|..|-.-|...-.|...--.==..+-.
T Consensus 1991 ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 1991 EIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555443 6666666666666666655 458888899999988876654444332222222233
Q ss_pred HhhHHHHHhcCCCcHH-----HHHHHHHhhcCCCCchHHHHHH
Q 009260 466 ALALEDALSRGLPIQK-----EIDTLYTYLDGIEKDSVLDLVL 503 (539)
Q Consensus 466 alALedAls~GaPI~~-----Evd~Lr~~l~GidKDsll~lal 503 (539)
.|.....|-.|+-=++ .+..|......+-.|.||.+|.
T Consensus 2071 kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaaf 2113 (3245)
T 3vkg_A 2071 KVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAF 2113 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444445555544333 2555554333333399998874
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.31 E-value=38 Score=43.09 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHhh----ccHHHHHHHHHHHhhhhHhhHHHHHhcCCCcHHHHHH
Q 009260 416 EIAASIAREKVAQIEKMAEANLHINAL------CMAFYA----RSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDT 485 (539)
Q Consensus 416 El~aaiA~EKA~qieki~ea~l~i~AL------~mAfya----rSeeaRqSH~vHKLALGalALedAls~GaPI~~Evd~ 485 (539)
.|...|+.||.+=-+.+.+++.++.-| +.||-+ =+.+-|+.= +.+ -...--..|-|+...++.
T Consensus 2077 ~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l-~~~------W~~~l~~~~Ip~s~~~~l 2149 (3245)
T 3vkg_A 2077 ALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDL-MRK------WMIRLDSVGIKFKSDLSV 2149 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-HHH------HHHHHHHHTCCCCTTCCH
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHH-HHH------HHHHHHhcCCCCCCCCCH
Confidence 567889999999888888887776653 334422 234444321 111 112222456666655543
Q ss_pred HHHhhcCCCCchHHHHHHhcCchHHh
Q 009260 486 LYTYLDGIEKDSVLDLVLSSLPEETR 511 (539)
Q Consensus 486 Lr~~l~GidKDsll~lalsSLPeea~ 511 (539)
..+|.. ...+..--...||.|-+
T Consensus 2150 -~~~L~~--~~~i~~W~~~GLP~D~l 2172 (3245)
T 3vkg_A 2150 -PSFLSK--PEERLNWHANSLPSDEL 2172 (3245)
T ss_dssp -HHHTSC--HHHHHHHHHTTCCSSHH
T ss_pred -HHHcCC--HHHHHHHHhCCCCCCch
Confidence 233322 24455556666666643
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.06 E-value=16 Score=36.82 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 009260 451 EEARKSYFAH 460 (539)
Q Consensus 451 eeaRqSH~vH 460 (539)
.-.|.||--|
T Consensus 586 ~~~~~~~~~~ 595 (597)
T 3oja_B 586 DTRRVSHHHH 595 (597)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3347787665
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.56 E-value=61 Score=30.44 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 009260 361 EAAILEKELKRER 373 (539)
Q Consensus 361 eaa~LdkELk~er 373 (539)
+...|.+|++.-+
T Consensus 91 E~~aL~kEie~~~ 103 (256)
T 3na7_A 91 ELRSLNIEEDIAK 103 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445666665433
No 5
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.68 E-value=15 Score=38.76 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=37.5
Q ss_pred ccccCC---CchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhHHHHHHH--HHH
Q 009260 302 GYLSKD---GKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDS---------RARELMRTEEAAI--LEK 367 (539)
Q Consensus 302 g~~s~D---GKlvld~~~AIhaAe~rQAe~DA~~f~Ee~r~lkekyEkELkda---------rarElm~aeeaa~--Ldk 367 (539)
+|.+.+ .|.+++++-.-|.-=.+.-.-|-.----++. +++=||..|.+ .+|+.+..+...+ -=+
T Consensus 268 ~F~t~~~~~ak~i~~lc~~~H~ff~~~r~~d~~e~qqm~~--~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 345 (575)
T 2i1j_A 268 VFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKA--QAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLR 345 (575)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH--HHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCchhHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555 5677887777776443333344332222222 22223333332 2344333332221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009260 368 ELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKA-----EIAASIAREKVAQIEKMAEANLHINAL 442 (539)
Q Consensus 368 ELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakA-----El~aaiA~EKA~qieki~ea~l~i~AL 442 (539)
.++.+-.++..++...++.+ ..|-+++++.++|++.=-++..++-.+ +.+..-++||.....++.++...|.-|
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~-~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 424 (575)
T 2i1j_A 346 QMQEEMERSQANLLEAQDMI-LRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRI 424 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666533 356666666666665422222221111 223344778888888999999999999
Q ss_pred HHHHhhccHHHHHHH
Q 009260 443 CMAFYARSEEARKSY 457 (539)
Q Consensus 443 ~mAfyarSeeaRqSH 457 (539)
.-+-.+|-+|+++-+
T Consensus 425 ~~~~~~~~~e~~~~~ 439 (575)
T 2i1j_A 425 QQEVELKDSETRRLQ 439 (575)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888876554
No 6
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.83 E-value=1.3e+02 Score=32.21 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=15.3
Q ss_pred HhhhhcccccCCCc--hhhHHHHHHHHHHHhhh
Q 009260 296 MEELNNGYLSKDGK--VVLDFLQAIHAAEQRQA 326 (539)
Q Consensus 296 ~eel~~g~~s~DGK--lvld~~~AIhaAe~rQA 326 (539)
.+.+.+|-.+..|- +.++.++.|...=..+|
T Consensus 419 ~~~i~~g~~~~p~g~~~~~~~~~~~~~~Y~~~~ 451 (592)
T 1f5n_A 419 EEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEP 451 (592)
T ss_dssp HHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhcCCcCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 44566665555553 34444444444444444
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=62.74 E-value=95 Score=35.41 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 009260 378 ATIKSLQEKM 387 (539)
Q Consensus 378 aaiK~lqe~~ 387 (539)
+.+++|++++
T Consensus 984 ~~v~~L~~e~ 993 (1080)
T 2dfs_A 984 NRVLSLQEEI 993 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 8
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=59.35 E-value=1.9e+02 Score=30.98 Aligned_cols=53 Identities=36% Similarity=0.428 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHH-------hhHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 009260 331 RAFAEEKRALKEKYEKEL-RDSRARE-------LMRTEEAAI---------LEKELKRERAKAAATIKSL 383 (539)
Q Consensus 331 ~~f~Ee~r~lkekyEkEL-kdararE-------lm~aeeaa~---------LdkELk~erak~aaaiK~l 383 (539)
..|..++..+.++|.++- |.-.+-+ .-...+.++ -+|+++.|++|+.++-++.
T Consensus 434 ~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~ 503 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASA 503 (592)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999998875 2332211 112234455 4779999999997775433
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=48.77 E-value=1.8e+02 Score=27.47 Aligned_cols=79 Identities=23% Similarity=0.202 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009260 333 FAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALEL 412 (539)
Q Consensus 333 f~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eel 412 (539)
|-+.=+.|....|++|..+..|.--.....+.|..|+..-|.|....-.+.. ..-..|+.+|..+......-..++.+|
T Consensus 36 FqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~-~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 36 FQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY-KQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888888777777777777777777777766644433322 244566666666554444433344333
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.19 E-value=2.4e+02 Score=28.29 Aligned_cols=9 Identities=22% Similarity=0.350 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 009260 335 EEKRALKEK 343 (539)
Q Consensus 335 Ee~r~lkek 343 (539)
++++.|+++
T Consensus 463 ~~i~~l~~~ 471 (597)
T 3oja_B 463 AEVQQLTNE 471 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 11
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=44.42 E-value=2.9e+02 Score=30.00 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=5.1
Q ss_pred HHHHHHHHHh
Q 009260 480 QKEIDTLYTY 489 (539)
Q Consensus 480 ~~Evd~Lr~~ 489 (539)
+.+|+++..+
T Consensus 401 ~~dv~~~~a~ 410 (551)
T 2b5u_A 401 QTDVNNKQAA 410 (551)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhHHHH
Confidence 3456665443
No 12
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.51 E-value=72 Score=26.95 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=4.9
Q ss_pred HHHHHHHhHHHH
Q 009260 391 LRMELEQKENEA 402 (539)
Q Consensus 391 L~~EL~~keeEa 402 (539)
|..||++++++.
T Consensus 57 L~~e~~~l~~~~ 68 (81)
T 1wt6_A 57 LEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 13
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=40.12 E-value=4.7e+02 Score=29.88 Aligned_cols=12 Identities=33% Similarity=0.227 Sum_probs=6.0
Q ss_pred cccccccccccc
Q 009260 25 SIISARKEYSTA 36 (539)
Q Consensus 25 ~~Ls~rk~fs~a 36 (539)
.+|+.++.|+-.
T Consensus 174 L~LrA~~~f~D~ 185 (861)
T 2zuo_A 174 LRLRARKECFDR 185 (861)
T ss_dssp EEECCCSSCCCT
T ss_pred EEEEEeeeEEcC
Confidence 345555555543
No 14
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=37.25 E-value=43 Score=24.19 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009260 333 FAEEKRALKEKYEKELRDSRAR 354 (539)
Q Consensus 333 f~Ee~r~lkekyEkELkdarar 354 (539)
..++...+.+.|++.|++||..
T Consensus 21 ~~~ea~~~~~~~e~~l~~Ar~e 42 (53)
T 2khk_A 21 AHKDLDLAKASATDQLKKAKAE 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566789999999999764
No 15
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=36.31 E-value=46 Score=28.56 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred cccCCCchhhHHHHHHHHHHHh-hhhhhHHH--HHHHHHHHHHHHHHH
Q 009260 303 YLSKDGKVVLDFLQAIHAAEQR-QAELDGRA--FAEEKRALKEKYEKE 347 (539)
Q Consensus 303 ~~s~DGKlvld~~~AIhaAe~r-QAe~DA~~--f~Ee~r~lkekyEkE 347 (539)
+..-|--.|+---+|+.||+.| |.++||.+ |.|..+.|.|...++
T Consensus 34 ~a~~dPd~vv~RQEAl~aaRlRMQEeldAqAe~~keKQkqlEEeKR~q 81 (89)
T 2q2f_A 34 AAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQ 81 (89)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 16
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=33.03 E-value=6.1e+02 Score=29.04 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=0.0
Q ss_pred hhHhhHHHHH
Q 009260 464 LGALALEDAL 473 (539)
Q Consensus 464 LGalALedAl 473 (539)
|+.|-|...|
T Consensus 822 l~~Lgl~~~l 831 (861)
T 2zuo_A 822 LQSLGLKSTL 831 (861)
T ss_dssp ----------
T ss_pred HHhCCCceEE
Confidence 4455554444
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.34 E-value=4e+02 Score=26.16 Aligned_cols=15 Identities=0% Similarity=-0.053 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 009260 337 KRALKEKYEKELRDS 351 (539)
Q Consensus 337 ~r~lkekyEkELkda 351 (539)
+..+.++.++.|++.
T Consensus 375 l~~~~~~i~~~l~~~ 389 (471)
T 3mq9_A 375 LKDAQTRITAARDGL 389 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 444555555555444
No 18
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=30.15 E-value=3.1e+02 Score=24.77 Aligned_cols=127 Identities=11% Similarity=0.177 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHH
Q 009260 376 AAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARK 455 (539)
Q Consensus 376 ~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAEl~aaiA~EKA~qieki~ea~l~i~AL~mAfyarSeeaRq 455 (539)
+..+++.+.+ |+.++.+.+.+...++..+.+..++++. ...+.+..+...|.+.|.+- |.+---
T Consensus 18 ~~~alr~ia~-----l~r~~~~i~~~~n~eI~~ik~~~~~~~~--------~l~~~i~~l~~~l~~y~e~~--r~elf~- 81 (171)
T 2p2u_A 18 AEGALAEIAT-----IDRKVGEIEAQMNEAIDAAKARASQKSA--------PLLARRKELEDGVATFATLN--KTEMFK- 81 (171)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHT--HHHHCC-
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh--HHHhcC-
Confidence 3456666666 6667777777777777777666644433 34456777777888888772 222200
Q ss_pred HHHHHHhhhhHhhHHHHHhcCC-Cc-----HHHHHHHHHh-h-------cCCCCchHHHHHHhcCchHHhhcCCcchHHh
Q 009260 456 SYFAHKLALGALALEDALSRGL-PI-----QKEIDTLYTY-L-------DGIEKDSVLDLVLSSLPEETRYHGTETLLQL 521 (539)
Q Consensus 456 SH~vHKLALGalALedAls~Ga-PI-----~~Evd~Lr~~-l-------~GidKDsll~lalsSLPeea~~~Gt~T~lQL 521 (539)
--....|..|.+.+.- +.+. |+ ..=|..|+.+ + +-+||| +|..+|++.+..---|+-+
T Consensus 82 k~Kt~~l~~G~v~~R~--~~~~v~~~~~~~~~vle~Lk~~gl~~~Ir~keevnK~-----al~~~~~~~~~~~Gv~v~~- 153 (171)
T 2p2u_A 82 DRKSLDLGFGTIGFRL--STQIVQMSKITKDMTLERLRQFGISEGIRIKEDVNKE-----AMQGWPDERLEMVGLKRRT- 153 (171)
T ss_dssp ---CCBCSSCBCCCCC--CCCCCCCTTCCHHHHHHHHHHTTCCTTCCCCCCCCHH-----HHTTSCHHHHHHTTCCCCC-
T ss_pred CCeEEEeCCEEEEEEe--CCCccccccCCHHHHHHHHHHCCcHhheeeccccCHH-----HHhcCcccceeeCCeEEEe-
Confidence 1122456678887653 2221 22 2234445442 1 223444 5555888766554445555
Q ss_pred hhccc
Q 009260 522 NQKPT 526 (539)
Q Consensus 522 ~qkF~ 526 (539)
...|.
T Consensus 154 ~e~F~ 158 (171)
T 2p2u_A 154 TDAFY 158 (171)
T ss_dssp CCCCC
T ss_pred cCcEE
Confidence 44443
No 19
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=29.44 E-value=3.1e+02 Score=24.62 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009260 334 AEEKRALKEKYEKELRDS-------RARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKL 406 (539)
Q Consensus 334 ~Ee~r~lkekyEkELkda-------rarElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql 406 (539)
.+|-+-..--.+++|..| .+..--++.-.--|..-|+++++....-++ .|+.||+.+..+.+-.+
T Consensus 20 q~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vq--------eLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 20 VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE--------ELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 344444444555666544 333333344445677888888877633333 35556666655555555
Q ss_pred HHHHHHHHH--HHHHHHHH
Q 009260 407 KNALELAKA--EIAASIAR 423 (539)
Q Consensus 407 ~~~eelakA--El~aaiA~ 423 (539)
.+++.|.+. .+.+.|+.
T Consensus 92 ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 92 AEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhchhhhhHhhh
Confidence 555555543 33444443
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.61 E-value=2.8e+02 Score=23.79 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 416 EIAASIAREKVAQIEKMAEANLHINALCMA 445 (539)
Q Consensus 416 El~aaiA~EKA~qieki~ea~l~i~AL~mA 445 (539)
+.++.+..+|-..-..+.+++-+|+-+.++
T Consensus 97 e~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 97 EMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555567777777888888888877654
No 21
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.13 E-value=2.9e+02 Score=22.88 Aligned_cols=74 Identities=23% Similarity=0.411 Sum_probs=42.5
Q ss_pred HhhhhcccccCCCchhhHHHHHHHHHHHhhhhhhHH--HH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 009260 296 MEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGR--AF-AEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRE 372 (539)
Q Consensus 296 ~eel~~g~~s~DGKlvld~~~AIhaAe~rQAe~DA~--~f-~Ee~r~lkekyEkELkdararElm~aeeaa~LdkELk~e 372 (539)
|-.|||-+.+ ||+=.+.-|+.-+.+-+. .+ ......+...|+.++.++|..=. ++..+
T Consensus 11 mq~LNdRlAs--------yIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~-----------~~~~e 71 (93)
T 3s4r_A 11 LQELNDRFAN--------LIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVD-----------QLTND 71 (93)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 4456654443 566666666555544332 11 11223466667777777754322 45677
Q ss_pred HHHHHHHHHHHHHHHH
Q 009260 373 RAKAAATIKSLQEKME 388 (539)
Q Consensus 373 rak~aaaiK~lqe~~E 388 (539)
+++....|..+++..+
T Consensus 72 k~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 72 KARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888877544
No 22
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.61 E-value=1.3e+02 Score=29.49 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=5.0
Q ss_pred chhhHHHHH
Q 009260 309 KVVLDFLQA 317 (539)
Q Consensus 309 Klvld~~~A 317 (539)
++.+||+-.
T Consensus 145 ~~~~~y~~~ 153 (315)
T 2ve7_A 145 KLFLDYTIK 153 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 466666543
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.81 E-value=5.5e+02 Score=25.19 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=36.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009260 390 KLRMELEQKENEAESKLKNALELAKA------EIAASIAREKVAQIEKMAEANLHINALCMA 445 (539)
Q Consensus 390 kL~~EL~~keeEa~~ql~~~eelakA------El~aaiA~EKA~qieki~ea~l~i~AL~mA 445 (539)
..+..|+|+=.+++..+-+++.-|.- -|-+.|-++++.+..+|.|+.-+|.-|+.-
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHK 458 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777666666544322 345667778888888888888777766543
No 24
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.40 E-value=3.6e+02 Score=22.85 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=9.6
Q ss_pred HHHHHHHHhHHHHHH
Q 009260 390 KLRMELEQKENEAES 404 (539)
Q Consensus 390 kL~~EL~~keeEa~~ 404 (539)
+|..++.+|++|...
T Consensus 42 ~Lh~~ie~~~eEi~~ 56 (83)
T 1wlq_A 42 KLHKEIEQKDSEIAR 56 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777666443
No 25
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=21.15 E-value=2.8e+02 Score=25.22 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009260 339 ALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEE-KLRMELEQKENEAESKLKNALELAKA 415 (539)
Q Consensus 339 ~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~Ee-kL~~EL~~keeEa~~ql~~~eelakA 415 (539)
-|++-|-.+|+|+-.-|- ....++..+..+++. .|+.-|++=-+|++.+++.++++-..
T Consensus 12 ~l~dlf~~~L~Diy~aE~------------------q~~~aL~~~~~~a~~p~Lk~~l~~H~~eT~~qi~rLe~i~~~ 71 (173)
T 2gyq_A 12 TMEDLLLHGLRDIYYAEQ------------------QITKALPKMIEQATNRDLSQGLTSHLEETQKQIERLDQVFKK 71 (173)
T ss_dssp SHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899998843322 134455555555554 88888999999999999988887643
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.97 E-value=9.7e+02 Score=27.37 Aligned_cols=26 Identities=42% Similarity=0.493 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009260 345 EKELRDSRARELMRTEEAAILEKELK 370 (539)
Q Consensus 345 EkELkdararElm~aeeaa~LdkELk 370 (539)
++|+..+.++-.-..++.+.|++++.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333444444544443
Done!