Query 009260
Match_columns 539
No_of_seqs 19 out of 21
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 22:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009260.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009260hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gyqa1 a.25.1.4 (A:1-160) Hyp 16.6 2.8E+02 0.02 23.0 10.0 77 338-432 9-96 (160)
2 d1f5na1 a.114.1.1 (A:284-583) 16.0 2.7E+02 0.02 22.7 15.2 23 64-86 1-23 (300)
3 d1ewfa2 d.83.1.1 (A:218-456) B 13.4 76 0.0055 27.0 4.0 56 30-86 8-64 (239)
4 d2gs4a1 a.25.1.4 (A:3-161) Hyp 13.4 1.7E+02 0.013 24.2 6.3 58 340-415 4-62 (159)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 11.9 53 0.0039 21.1 1.8 15 63-77 3-19 (27)
6 d1vf7a_ f.46.1.1 (A:) Multidru 10.0 2.6E+02 0.019 22.0 6.1 17 328-344 46-62 (237)
7 d1v54i_ f.23.3.1 (I:) Mitochon 8.5 81 0.0059 24.3 2.1 21 62-82 21-41 (73)
8 d2dj7a1 g.39.1.3 (A:44-74) Act 8.5 37 0.0027 22.7 0.1 11 299-309 9-19 (31)
9 d1t1va_ c.47.1.14 (A:) SH3BGRL 8.2 43 0.0031 24.8 0.3 31 56-86 59-91 (93)
10 d2b61a1 c.69.1.40 (A:2-358) Ho 7.1 46 0.0033 30.7 0.1 43 36-81 92-154 (357)
No 1
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=16.59 E-value=2.8e+02 Score=22.99 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHH-
Q 009260 338 RALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEE-KLRMELEQKENEAESKLKNALELAKA- 415 (539)
Q Consensus 338 r~lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~Ee-kL~~EL~~keeEa~~ql~~~eelakA- 415 (539)
+-|++-|-.+|+|+-.-|- ....++..+...+.. .|+.-|++--+|++.|++.++.+-+.
T Consensus 9 ~tl~dlfi~~L~d~y~aE~------------------q~~~al~~m~~~a~~peLk~~l~~H~~eT~~qi~rLe~i~~~l 70 (160)
T d2gyqa1 9 QTMEDLLLHGLRDIYYAEQ------------------QITKALPKMIEQATNRDLSQGLTSHLEETQKQIERLDQVFKKL 70 (160)
T ss_dssp CSHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4578899999999854332 123344444444433 78888888899999999999888765
Q ss_pred ---------HHHHHHHHHHHHHHHHH
Q 009260 416 ---------EIAASIAREKVAQIEKM 432 (539)
Q Consensus 416 ---------El~aaiA~EKA~qieki 432 (539)
.....|..|-...+..+
T Consensus 71 g~~p~~~~c~am~gli~e~~~~~~~~ 96 (160)
T d2gyqa1 71 GQKPSGVNCPAIDGLIKEADETAGEI 96 (160)
T ss_dssp TCCSCSCCCHHHHHHHHHHHHHHHTB
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhc
Confidence 34455665555444443
No 2
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.97 E-value=2.7e+02 Score=22.67 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHhchhhhhhh
Q 009260 64 GATVVVGVGLIAYQNGYLDQYID 86 (539)
Q Consensus 64 G~~~V~~a~l~AYQ~GylDq~~~ 86 (539)
||..|-|-.|+.|=--|+|-+-+
T Consensus 1 gg~~~~g~~l~~l~~~yv~ain~ 23 (300)
T d1f5na1 1 GGIQVNGPRLESLVLTYVNAISS 23 (300)
T ss_dssp TTEECBHHHHHHHHHHHHHHHHH
T ss_pred CCceeeHHHHHHHHHHHHHHHcC
Confidence 77778888877766666665544
No 3
>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.39 E-value=76 Score=27.01 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=36.7
Q ss_pred cccccccccCCCCCC-CCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhchhhhhhh
Q 009260 30 RKEYSTASQKNVSPK-PGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYID 86 (539)
Q Consensus 30 rk~fs~asq~~~s~~-~gp~gkP~~Sgs~~sK~~lG~~~V~~a~l~AYQ~GylDq~~~ 86 (539)
+-+|......+..|- |.|---|+ ..+.+--+.+.--+.=.++.++|++|+||-.|.
T Consensus 8 kG~f~~~~~~~~~pf~~~~~~~p~-~~~~M~~~~isey~~nS~~~~~~~ag~l~~~it 64 (239)
T d1ewfa2 8 KGEFYSENHHNPPPFAPPVMEFPA-AHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLR 64 (239)
T ss_dssp CCEEECSSCCCCCSSCCCCCCCCC-CCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEE
T ss_pred eEEEEeCCCCCCCCCCCCCcCCCC-CCCcEEEEEEcHHHHHHHHHHHHHCCCeEEEEC
Confidence 344554455555553 33334443 455677777888888888899999999995553
No 4
>d2gs4a1 a.25.1.4 (A:3-161) Hypothetical protein YciF {Escherichia coli [TaxId: 562]}
Probab=13.39 E-value=1.7e+02 Score=24.24 Aligned_cols=58 Identities=14% Similarity=0.258 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009260 340 LKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKME-EKLRMELEQKENEAESKLKNALELAKA 415 (539)
Q Consensus 340 lkekyEkELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~E-ekL~~EL~~keeEa~~ql~~~eelakA 415 (539)
|++-|-.+|+|+-.-|- + ...++.++...+. ..|+.-|++--+|++.|+++++.+-..
T Consensus 4 l~dlfi~~L~d~y~aE~-Q-----------------~~~al~~m~~~a~~~eLk~~l~~H~~eT~~qi~rLe~i~~~ 62 (159)
T d2gs4a1 4 IEDVFIHLLSDTYSAEK-Q-----------------LTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQVVES 62 (159)
T ss_dssp HHHHHHHHHHHHHHHHH-H-----------------HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-H-----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999843331 0 2233333332222 277777777778888888877766643
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.88 E-value=53 Score=21.14 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=9.8
Q ss_pred hhhHH--HHHHHHHHHH
Q 009260 63 FGATV--VVGVGLIAYQ 77 (539)
Q Consensus 63 lG~~~--V~~a~l~AYQ 77 (539)
+|-++ ++|-+.||||
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 55444 3566788998
No 6
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.02 E-value=2.6e+02 Score=22.02 Aligned_cols=17 Identities=6% Similarity=0.302 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 009260 328 LDGRAFAEEKRALKEKY 344 (539)
Q Consensus 328 ~DA~~f~Ee~r~lkeky 344 (539)
+|..-|...+..++..|
T Consensus 46 ld~~~~~~~l~~a~a~~ 62 (237)
T d1vf7a_ 46 IDPATYEADYQSAQANL 62 (237)
T ss_dssp ECCHHHHHHHHHHHHHH
T ss_pred EehHHHHhhhhhhhhhh
Confidence 45554544444444443
No 7
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.49 E-value=81 Score=24.31 Aligned_cols=21 Identities=24% Similarity=0.082 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHHHHhchhh
Q 009260 62 IFGATVVVGVGLIAYQNGYLD 82 (539)
Q Consensus 62 ~lG~~~V~~a~l~AYQ~GylD 82 (539)
++|+.+|..++-++|..|.-|
T Consensus 21 l~~a~~lsl~~a~~~Kf~v~e 41 (73)
T d1v54i_ 21 IVGAFMVSLGFATFYKFAVAE 41 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 388999998889999999888
No 8
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.46 E-value=37 Score=22.68 Aligned_cols=11 Identities=55% Similarity=0.899 Sum_probs=9.2
Q ss_pred hhcccccCCCc
Q 009260 299 LNNGYLSKDGK 309 (539)
Q Consensus 299 l~~g~~s~DGK 309 (539)
|++.||++||+
T Consensus 9 L~gEYm~kdG~ 19 (31)
T d2dj7a1 9 LTGEYISKDGV 19 (31)
T ss_dssp CSSCCEEETTE
T ss_pred ccceeecCCCC
Confidence 67789999995
No 9
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.18 E-value=43 Score=24.84 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=26.3
Q ss_pred CCCCccchhhHHHHHHH--HHHHHhchhhhhhh
Q 009260 56 SNFSPIIFGATVVVGVG--LIAYQNGYLDQYID 86 (539)
Q Consensus 56 s~~sK~~lG~~~V~~a~--l~AYQ~GylDq~~~ 86 (539)
..+|-+|+|+-.|||.- ..+++.|-|+.|+.
T Consensus 59 ~t~Pqifv~~~~iGg~del~~~~e~g~L~~~lk 91 (93)
T d1t1va_ 59 ATPPQIVNGNHYCGDYELFVEAVEQDTLQEFLK 91 (93)
T ss_dssp CCSCEEEETTEEEEEHHHHHHHHHTTCHHHHTT
T ss_pred ceeEEEEECCEEEecHHHHHHHHHCCCHHHHhc
Confidence 36788999999999875 88899999998875
No 10
>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]}
Probab=7.13 E-value=46 Score=30.75 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCccchh------------------hHHHHHHH--HHHHHhchh
Q 009260 36 ASQKNVSPKPGPTGKPPESGSNFSPIIFG------------------ATVVVGVG--LIAYQNGYL 81 (539)
Q Consensus 36 asq~~~s~~~gp~gkP~~Sgs~~sK~~lG------------------~~~V~~a~--l~AYQ~Gyl 81 (539)
.|...+|++| .+|+|. |.+||.+.+. -+||||.. |-|||-+.+
T Consensus 92 gSs~p~s~~p-~tg~~~--g~~FP~iti~D~v~aq~~Ll~~LGI~~l~~viG~SmGGmqAl~wa~~ 154 (357)
T d2b61a1 92 GTTGPSSINP-QTGKPY--GSQFPNIVVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQANQWAID 154 (357)
T ss_dssp SSSCTTSBCT-TTSSBC--GGGCCCCCHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHHHHHHH
T ss_pred ccCCcCCCCC-CCCCCC--CcccccchhHHHHHHHHHHHHHhCcceEEEEecccHHHHHHHHHHHh
Done!