BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009261
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|B Chain B, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|C Chain C, Crystal Structure Of Dicamba Monooxygenase
pdb|3GB4|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GOB|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GTE|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTS|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GL0|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL2|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
Length = 349
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 130 DACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVY 189
D CPHR APLS+G I G LQCPYHG F G G C P P + +
Sbjct: 47 DICPHRFAPLSDG-ILVNGHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRS-----F 100
Query: 190 PSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELD---DPSFTKMFGSRDVPYGYEVLME 246
P ++ ++W WP P D P IP+ DP++ + G V Y++L++
Sbjct: 101 PVVERDALIWIWPG-DPALAD------PGAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVD 153
Query: 247 NLMDPAHLTYAHYGMMRT 264
NLMD H Y H +T
Sbjct: 154 NLMDLGHAQYVHRANAQT 171
>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase
(Ksha) From M. Tuberculosis
Length = 386
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 149
W+ L D + PH + G +VV+ D + + +V C H LSEG + +
Sbjct: 26 WHCLGVAKDYLEGKPHGVEAFGTKLVVFAD-SHGDLKVLDGYCRHMGGDLSEGTV-KGDE 83
Query: 150 LQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCK 209
+ CP+H W + G G CK +P A T + A + + V++G+L+ W D
Sbjct: 84 VACPFHDWRWGGDGRCKLVPYAR------RTPRMARTRSWTTDVRSGLLFVWHDHEGNPP 137
Query: 210 DIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEV--LMENLMDPAHLTYAHYGM 261
D + P IPE +T +R + G +++N+ D AH Y H+G+
Sbjct: 138 D--PAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTDMAHFFYIHFGL 189
>pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray
Crystallographic, Resonance Raman And Uv-Visible
Spectroscopic Analysis Of A Rieske- Type Demethylase
pdb|3VCP|A Chain A, The 2.2 Angstrom Structure Of Stc2 With Proline Bound In
The Active Site
Length = 412
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 12/216 (5%)
Query: 86 WFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID 145
++ QW +PVC L K + +G VV + E R F ++C HR + + + R
Sbjct: 40 FYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQG 99
Query: 146 QWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205
Q +L CPYH W + G + A GP SK V + I D
Sbjct: 100 QVAKLVCPYHQWTYELDGKLIW---ANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTP 156
Query: 206 PQCKDIIKTKKP-PHIPELDDPSFTKMFGSRDVPYG-YEVLMENLMDPAHLTYAHYGMMR 263
P + + +P + +L D F S + G ++++ EN + H + H + R
Sbjct: 157 PDFQTFAQLARPYLEVHDLKDAKVA--FTSTIIEKGNWKLVWENNRECYHCSSNHPALCR 214
Query: 264 T--RKPKVM-LDREGG--RPIKISFEKIDINGFIAK 294
+ P+V + +GG + ++ F++ + G A+
Sbjct: 215 SFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQ 250
>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring
Hydroxylating Dioxygenase (Tm1040_3219) From
Silicibacter Sp. Tm1040 At 1 Resolution
Length = 409
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 86 WFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID 145
++ +W +P C+LDK + +G V+ +N R F +AC HR + + + +
Sbjct: 38 FYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKG 97
Query: 146 QWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205
+L CPYH W + G + PD P S+ V+ + I D A
Sbjct: 98 NNPKLVCPYHQWTYELDGRLLWARDXGPDFEP---SRHGLKTVHCRELAGLIYICLADEA 154
Query: 206 PQCKDIIKTKKPPHIPELDDPSFTKM-FGSRDVPYG-YEVLMENLMDPAHLTYAHYGMMR 263
P + + +P E+ D S K+ S V G ++++ EN + H H + R
Sbjct: 155 PDFERFAEVARP--YLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCR 212
Query: 264 T 264
T
Sbjct: 213 T 213
>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|G Chain G, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|H Chain H, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|I Chain I, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|J Chain J, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|K Chain K, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|L Chain L, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|M Chain M, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|N Chain N, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|O Chain O, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
Length = 394
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Query: 88 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLS-EGRIDQ 146
+ W+P +L + A +LG V++ R + E + AD C HR P S E +
Sbjct: 33 NHWHPAAFDHELAEGEFVAVTMLGEKVLL--TRAKGEVKAIADGCAHRGVPFSKEPLCFK 90
Query: 147 WGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAP 206
G + C YHGW + D + + G PV K VYP V G+++ + I
Sbjct: 91 AGTVSCWYHGWTYD-LDDGRLVDVLTSPGSPV--IGKIGIKVYPVQVAQGVVFVF--IGD 145
Query: 207 QCKDIIKTKKPPHIPELDDPSFTKMFG-SRDVPYGYEVLMENLMDPAHL 254
+ + PP + D T + G R V + + +EN D H+
Sbjct: 146 EEPHALSEDLPPGFLDED----THLLGIRRTVQSNWRLGVENGFDTTHI 190
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 447
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 105 HAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGD 164
+ K +G+D V+ +N+ R F + C HR L C YHGW + +G+
Sbjct: 52 YVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGE 111
Query: 165 CKFIP 169
+ +P
Sbjct: 112 LQSVP 116
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HML|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMN|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene
Length = 449
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase
pdb|1NDO|C Chain C, Napthalene 1,2-Dioxygenase
pdb|1NDO|E Chain E, Napthalene 1,2-Dioxygenase
pdb|1EG9|A Chain A, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|A Chain A, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|A Chain A, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|A Chain A, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|A Chain A, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|A Chain A, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|A Chain A, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|A Chain A, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|A Chain A, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMK|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HMM|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMO|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 449
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|C Chain C, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|E Chain E, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B24|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|C Chain C, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|E Chain E, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
Length = 470
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 33/80 (41%)
Query: 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 149
W L ++ +R + + + D + E R +AC HR + +
Sbjct: 46 WVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSH 105
Query: 150 LQCPYHGWCFSGSGDCKFIP 169
+CPYHGW +S +G +P
Sbjct: 106 FRCPYHGWTYSNTGSLVGVP 125
>pdb|1VCK|A Chain A, Crystal Structure Of Ferredoxin Component Of Carbazole
1,9a- Dioxygenase Of Pseudomonas Resinovorans Strain
Ca10
pdb|2DE5|D Chain D, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|E Chain E, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|F Chain F, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE6|D Chain D, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|E Chain E, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|F Chain F, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE7|D Chain D, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|E Chain E, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|F Chain F, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|D Chain D, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|E Chain E, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|F Chain F, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMH|D Chain D, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|E Chain E, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|F Chain F, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMI|D Chain D, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|E Chain E, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|F Chain F, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
Length = 115
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 130 DACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPV 178
D C H +A LSEG +D ++CP+HG F+ C +P + P P+
Sbjct: 44 DTCTHGIASLSEGTLDG-DVIECPFHGGAFN---VCTGMPASSPCTVPL 88
>pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of
Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase
System Catalyzing The Novel Angular Dioxygenation For
Carbazole And Dioxin
pdb|2DE5|A Chain A, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|B Chain B, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|C Chain C, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE6|A Chain A, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|B Chain B, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|C Chain C, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE7|A Chain A, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|B Chain B, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|C Chain C, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|A Chain A, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|B Chain B, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|C Chain C, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMH|A Chain A, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|B Chain B, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|C Chain C, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMI|A Chain A, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|B Chain B, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|C Chain C, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
Length = 392
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 18/182 (9%)
Query: 81 EEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLS 140
+ K + + WYP+M ++++ P K+LG +++V +R + + D C HR LS
Sbjct: 20 DAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLV--NRIDGKLYCLKDRCLHRGVQLS 77
Query: 141 -EGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILW 199
+ + C YH W + P + K YP G ++
Sbjct: 78 VKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQK---LKTYPVQEAKGCVF 134
Query: 200 FW---PDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTY 256
+ D P +D PP+ LDD + ++ + + + +EN DP+H+ Y
Sbjct: 135 IYLGDGDPPPLARDT-----PPNF--LDD-DMEILGKNQIIKSNWRLAVENGFDPSHI-Y 185
Query: 257 AH 258
H
Sbjct: 186 IH 187
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
Length = 460
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G D V+ + E RVF + C HR + C YHGW + G+ +P
Sbjct: 76 MGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVP 135
>pdb|1WQL|A Chain A, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 459
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G D V+ + + +VF + C HR + C YHGW + +G+ +P
Sbjct: 79 MGEDPVIVVRQKDRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDTAGNLVNVP 138
>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
Length = 389
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 15/177 (8%)
Query: 81 EEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLS 140
+ K + + WYP+ ++ + P ++LG V++ +R + AD C HR LS
Sbjct: 23 DAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLL--NRVDGVVHAIADRCLHRGVTLS 80
Query: 141 EGRIDQWGR--LQCPYHGWCFS-GSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGI 197
+ +++ + + + C YHGW + +G I P V + A YP + G+
Sbjct: 81 D-KVECYSKATISCWYHGWTYRWDNGKLVDILTNPTS---VQIGRHAL-KTYPVREEKGL 135
Query: 198 LWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHL 254
++ + + Q + PP + D + R V + + +EN D H+
Sbjct: 136 VFLF--VGDQEPHDLAEDVPPGFLDADLAVHGQ---HRVVDANWRMGVENGFDAGHV 187
>pdb|2GBW|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBX|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
Length = 454
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 113 DVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
D V+ +++ +R F ++C HR + C YHGW F G +P
Sbjct: 61 DKVILSHQSDGTFRAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVP 117
>pdb|3EN1|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase
pdb|3EQQ|A Chain A, Apo Toluene 2,3-Dioxygenase
Length = 450
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 30/80 (37%)
Query: 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 149
W L + K + +G D VV + + VF + C HR +
Sbjct: 54 WLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKA 113
Query: 150 LQCPYHGWCFSGSGDCKFIP 169
C YHGW + +G+ +P
Sbjct: 114 FTCSYHGWAYDTAGNLVNVP 133
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G D V+ + + +VF + C HR + C YHGW + +G+ +P
Sbjct: 78 MGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVP 137
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G D VV + + +VF + C HR + C YHGW + +G +P
Sbjct: 78 MGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G D VV + + +VF + C HR + C YHGW + +G +P
Sbjct: 78 MGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G D VV + + +VF + C HR + C YHGW + +G +P
Sbjct: 78 MGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 277 RPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGG---AEEKLK 333
RP +I + D+ F+A+ + +FL +V F+L +Q + + G EE+++
Sbjct: 1504 RPSQIDLDDADVKDFVAEISERTGEFLE----IVNFNLRGSQYAIAGTVAGLEALEEEIE 1559
Query: 334 QRRV------AMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPR 371
+RR + I + P +S V+ +F+ +++V+PR
Sbjct: 1560 RRRQITGGKRSFILVPGIDVPFHSSVLRVGVADFRRSLERVMPR 1603
>pdb|2CKF|A Chain A, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|C Chain C, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|E Chain E, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
Length = 454
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 113 DVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
D ++ +++ +R F ++C HR + C YHGW + G +P
Sbjct: 61 DKIILSHQSDGTFRAFINSCTHRGNQICHADSGNAKAFVCNYHGWVYGQDGSLVDVP 117
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 220 IPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKV----MLDREG 275
+ + + P K F D+P G +L+E L A + + M R P+V +L EG
Sbjct: 23 LEKFNQPLVYKEFEISDIPRG-SILVEIL--SAGVCGSDVHMFRGEDPRVPLPIILGHEG 79
Query: 276 -GRPIKISFEKIDINGFIAK 294
GR ++++ EK D+NG + K
Sbjct: 80 AGRVVEVNGEKRDLNGELLK 99
>pdb|2WOK|A Chain A, Clavulanic Acid Biosynthesis Oligopeptide Binding Protein
2 Complexed With Bradykinin
pdb|2WOL|A Chain A, Clavulanic Acid Biosynthesis Oligopeptide Binding Protein
2
pdb|2WOP|A Chain A, Clavulanic Acid Biosynthesis Oligopeptide Binding Protein
2 Complexed With Arginine
Length = 562
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 422 RMWLKKYSGGQFNWGGKFDATLPPTLPREQLMDRY 456
++ L+ GG N G A PPTLP Q +D Y
Sbjct: 331 KILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLY 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,953,254
Number of Sequences: 62578
Number of extensions: 652675
Number of successful extensions: 1148
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 24
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)