BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009261
(539 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52,
chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
Length = 559
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/527 (59%), Positives = 388/527 (73%), Gaps = 27/527 (5%)
Query: 39 PLSTLSSFSSKPSKLFTTLSPSSQVSTEATD--PPETEPETNSQEEKFDWFSQWYPLMPV 96
P+S S + K S+ T +S S + PPE E +KFDW++ WYP+MP+
Sbjct: 32 PISPNSLITRKSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYANWYPVMPI 91
Query: 97 CDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHG 156
CDLDK+VPH KKV+G+D+VVWWDRNE +W+V D CPHRLAPLS+GRIDQWGRLQC YHG
Sbjct: 92 CDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCVYHG 151
Query: 157 WCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKK 216
WCF+GSGDCK IPQAPPDGPPVHT K+AC AVYPS VQ+ I+WFWP+ P+ K+II+T K
Sbjct: 152 WCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIWFWPNSDPKYKNIIETNK 211
Query: 217 PPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPK-------- 268
PP+IPEL+DPSFTK+ G+RD+PYGY+VL+ENLMDPAH+ YAHYG+MR KPK
Sbjct: 212 PPYIPELEDPSFTKLMGNRDIPYGYDVLVENLMDPAHVPYAHYGLMRFPKPKGKYIICIS 271
Query: 269 -----------VML----DREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFD 313
++L DREGG+P++I+ +K+D GF +KQ+ + F+APCV+ D
Sbjct: 272 NSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTD 331
Query: 314 LLENQENGSASSGGAEE-KLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRW 372
L QE+ + +++ L +RR+++IFIC PVSPG SR+IW FPRNF ++IDK+VPRW
Sbjct: 332 PLPEQEHEYPAPAASDKAALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRW 391
Query: 373 IFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQ 432
+FHIGQN ILDSDL LLHVEERKI+ GP NWQKACF+PTKSD VV FR W KYS +
Sbjct: 392 VFHIGQNTILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEAR 451
Query: 433 FNWGGKFDA-TLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIV 491
+W GKFD LPPT PREQL DRYWSHV NC SC AHK LNALEVILQ+ SV +G++
Sbjct: 452 VDWRGKFDPFLLPPTPPREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVM 511
Query: 492 AATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHAL 538
A KQ MS R ++ AV+ FAASKWLSHF+YKTFHYHDYNHA+
Sbjct: 512 AVLKQTTMSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHAV 558
>sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=PAO PE=1 SV=1
Length = 537
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 179/527 (33%), Positives = 261/527 (49%), Gaps = 61/527 (11%)
Query: 45 SFSSKPSKLF----TTLSPSSQVSTEATDPPETEPETNSQEEK----FDWFSQWYPLMPV 96
S S SKLF +P S ++++T+ E E +E+ F W WYP+ V
Sbjct: 35 SISPSRSKLFHNPLRVAAPPSVPTSDSTEEKRIEEEYGGDKEEEGSEFKWRDHWYPVSLV 94
Query: 97 CDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHG 156
DLD VP ++LG D+V+W+DRN+ +W F D CPHRLAPLSEGR+D+ G LQC YHG
Sbjct: 95 EDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHG 154
Query: 157 WCFSGSGDCKFIPQAPPDGPPVHTSK--KACAAVYPSAVQNGILWFWPDIAPQCKDIIKT 214
W F G G C IPQA GP K +ACA +P+ V G+L+ WPD D +
Sbjct: 155 WSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVWPD--ENGWDRANS 212
Query: 215 KKPPHIP-ELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDR 273
+PP +P + D P F+ + RD+ YGY+ LMEN+ DP+H+ +AH+ KV R
Sbjct: 213 IEPPRLPDDFDKPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFAHH--------KVTGRR 264
Query: 274 EGGRPIKISFEKIDINGFIAKQDSE---SAKFLAPCVFVVYFDLLENQENGSASSGGAEE 330
+ +P+ E GF D +AKF+APC + +L A+
Sbjct: 265 DRAKPLPFKVESSGPWGFQGANDDSPRITAKFVAPCYSMNKIEL------------DAKL 312
Query: 331 KLKQRRVAMIFICA---PVSPGNSRVIWAFPRN-FQIWID-----KVVPRWIFHIGQNLI 381
+ + +I+IC+ P++PG +R I RN FQ + +VVPRW H NL+
Sbjct: 313 PIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLV 372
Query: 382 LDSDLCLLHVEERKIMAVG--------PANWQKACFVPTKSDNLVVGFRMWLKKYSGGQF 433
D D+ +L +E+ +A + K F PT++D V+ FR WL+++ Q
Sbjct: 373 YDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPTQADRFVLAFRNWLRRHGKSQP 432
Query: 434 NWGGKFDATLP---PTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGI 490
W G + P L + Q++DR+ H C SC A+ S L+ L +V
Sbjct: 433 EWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVGATV----F 488
Query: 491 VAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHA 537
AAT + R + ++I AAS + H K F + DY H+
Sbjct: 489 WAATAGVPSDVQIRLVLAGLSLIS-AASAYALHEQEKNFVFRDYVHS 534
>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1
Length = 553
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 211/494 (42%), Gaps = 95/494 (19%)
Query: 71 PETEPETNSQEE--KFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVF 128
P +E E + E +DW +WYPL ++ P KV ++V++ D N+ +++ +
Sbjct: 82 PSSEQERKGEREVADYDWTEEWYPLYLTKNVPHDAPLGLKVYDKNIVLFRDGND-QFQCY 140
Query: 129 ADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAV 188
D CPHRLA LSEG++ GRL+C YHGW F G G C IPQ P D K AC
Sbjct: 141 EDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPADA---KIPKSACVKT 196
Query: 189 YPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPEL------DDPSFTKMFGSRDVPYGYE 242
Y G+LW W + K PP++ ++ P F + + ++PY +
Sbjct: 197 YEVRDSQGVLWVW----------MSRKTPPNVSKIPWFENFARPGFQDISTTHELPYDHS 246
Query: 243 VLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIA----KQDSE 298
+L+ENLMDPAH+ +H + K RE + + + GF ++D
Sbjct: 247 ILLENLMDPAHVPISHDRTDWSAK------REDAQALGFEVTERTDRGFAGWWGREKDGS 300
Query: 299 SAKFL---APCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIW 355
FL APCV ++++ + SG +F+C P G S +I
Sbjct: 301 KPNFLRFEAPCVLQNNREIVDKNGEINHFSG-------------LFLCRPTGQGKSMLIV 347
Query: 356 AFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTK-- 413
F + + K+ P W FH + + + D+ L + ++ VPTK
Sbjct: 348 RFGATKRSPLIKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEK---------VPTKEL 398
Query: 414 ------SDNLVVGFRMWLKKYSGGQFNWGGKFDATLPP---------------------- 445
SD V +R W+ K G G +LP
Sbjct: 399 YLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPEEPAVVEHAPAGLVAGLSASSPA 458
Query: 446 -----TLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQ--VVSVVSVGIVAATKQNA 498
T+ L +RY+ HV++CK C++A K+ + +L VV++ ++ I+ + +Q
Sbjct: 459 KGGIGTMHAPNLANRYFRHVIHCKGCSSAIKAFQIWKNVLSGVVVALAALAILVSGRQWK 518
Query: 499 MSMATRATIVSFAV 512
+ + A++ S V
Sbjct: 519 VLLLASASLCSVGV 532
>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2
SV=1
Length = 539
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 137/521 (26%), Positives = 208/521 (39%), Gaps = 103/521 (19%)
Query: 57 LSPSSQVSTEATDPPETEPET--NSQEEK------FDWFSQWYPLMPVCDLDKRVPHAKK 108
L S+ T +D E + N +EEK +DW +WYPL ++ + P
Sbjct: 47 LRRSAVAGTAVSDQTEGGGDVLLNPEEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLT 106
Query: 109 VLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFI 168
V +V++ D E R + D CPHRLA LSEG++ GRL+C YHGW F G G C I
Sbjct: 107 VYDRQIVLYKD-GEGTLRCYEDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKI 164
Query: 169 PQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPEL----- 223
PQ P K AC Y G++W W + TK PP+ +L
Sbjct: 165 PQLPASA---KIPKAACVKTYEVKDSQGVVWVW----------MSTKTPPNPEKLPWFEN 211
Query: 224 -DDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKIS 282
P F + + ++PY + +L+ENLMDPAH+ +H T K RE +P+
Sbjct: 212 FARPGFFDISTTHELPYDHSILLENLMDPAHVPISHDRTDFTAK------REDAQPLVFE 265
Query: 283 FEKIDINGFIAK--------QDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQ 334
+ GF + S +F APCV L+N G +
Sbjct: 266 VTERSNRGFAGTWGREKEGGKGSNLLRFDAPCV-------LQNNREFEGKDG------VK 312
Query: 335 RRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEER 394
+ +F+C P G S +I F + + V+P+W +H + + D+ L +
Sbjct: 313 NYFSGLFLCRPTGQGKSMLIVRFGVTKRSPLVSVLPQWFWHQNACKVFEQDMGFLSSQNE 372
Query: 395 KIMAVGPANWQKACFVPTK--------SDNLVVGFRMWLKKYSGGQFNWGGKFDATLPP- 445
+M VPTK SD V +R W+ K G G +LP
Sbjct: 373 VLMKEK---------VPTKDLYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHRTISLPKV 423
Query: 446 --------------------------TLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVI 479
T+ L +RY+ H+++C+SC+ KS + I
Sbjct: 424 PPVVEHAPAGLIAALSASYPAKGGIGTMHAPNLANRYFRHIIHCRSCSNVIKSFELWKNI 483
Query: 480 LQVVSVVSVG---IVAATKQNAMSMATRATIVSFAVICFAA 517
L +V +V + + A+ + + A + A C A
Sbjct: 484 LSATAVALTALAILVVSRQWKAVLLGSAALCSAAAYTCLRA 524
>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina
GN=CAO PE=2 SV=1
Length = 463
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 155/403 (38%), Gaps = 45/403 (11%)
Query: 49 KPSKLFTTLSPS-----SQVSTEATDPPETEPETNSQEEKFDWFSQWYPLMPVCDLDKRV 103
+ S + +T PS SQ P ++ +S E + + WYP L+ +
Sbjct: 88 RGSGMASTSYPSHVPQPSQAVRRGPKPKDSRRLRSSLELEDGLRNFWYPTEFAKKLEPGM 147
Query: 104 PHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG 163
+ G+ V++ D + D+C HR PLS G++ G +QCPYHGW F GSG
Sbjct: 148 MVPFDLFGVPWVLFRDEHSAP-TCIKDSCAHRACPLSLGKVIN-GHVQCPYHGWEFDGSG 205
Query: 164 DCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPEL 223
C +P A P ++G +W WP P PP ++
Sbjct: 206 ACTKMPS-------TRMCHGVGVAALPCVEKDGFVWVWPGDGPPPDLPPDFTAPPAGYDV 258
Query: 224 DDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISF 283
DVP + +LMENL+D AH + H R P + F
Sbjct: 259 HAEIMV------DVPVEHGLLMENLLDLAHAPFTH---------TTTFARGWPIPEAVRF 303
Query: 284 EKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFIC 343
+ S F PC+ + L + G G E+ K R + + +C
Sbjct: 304 HATKMLAGDWDPYPISMSFNPPCIALSTIGL---SQPGKIMRGYKAEECK-RHLHQLHVC 359
Query: 344 APVSPGNSRVIWAFPRNFQIWIDKVVP----RWIFHIGQNLILDSDLCLLHVEERKIMAV 399
P G++R+++ +F W K VP W GQ +L DL L+ ++ +++
Sbjct: 360 MPSKEGHTRLLYRMSLDFWGWA-KHVPFVDVLWKKIAGQ--VLGEDLVLVLGQQARMIG- 415
Query: 400 GPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDAT 442
G W P D L V +R W + G++ G + T
Sbjct: 416 GDDTW----CTPMPYDKLAVRYRRWRNMVADGEYEEGSRNRCT 454
>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas
reinhardtii GN=CAO PE=2 SV=2
Length = 645
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 128/298 (42%), Gaps = 37/298 (12%)
Query: 130 DACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVY 189
D C HR PLS G++ + G++ CPYHGW F+G G C +P P + A
Sbjct: 344 DECAHRGCPLSLGKVVE-GQVMCPYHGWEFNGDGACTKMPSTP-------FCRNVGVAAL 395
Query: 190 PSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLM 249
P A ++G +W WP + + +PP + DVP + +L+ENL+
Sbjct: 396 PCAEKDGFIWVWPGDGLPAETLPDFAQPPEGFLIHAEIMV------DVPVEHGLLIENLL 449
Query: 250 DPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFV 309
D AH + H P +K K ++GF + A F PC+ +
Sbjct: 450 DLAHAPFTHTSTFARGWPVPDF-------VKFHANKA-LSGFWDPYPIDMA-FQPPCMTL 500
Query: 310 VYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVV 369
L + G G + K + + +C P G++R+++ +F W+ + V
Sbjct: 501 STIGL---AQPGKIMRGVTASQCKN-HLHQLHVCMPSKKGHTRLLYRMSLDFLPWM-RHV 555
Query: 370 PRWIFHIGQNL---ILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMW 424
P +I I + + +L DL L+ ++ +++ G +NW P D L V +R W
Sbjct: 556 P-FIDRIWKQVAAQVLGEDLVLVLGQQDRMLR-GGSNWSN----PAPYDKLAVRYRRW 607
>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain ATCC 19151) GN=vanA PE=3 SV=1
Length = 329
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 110/289 (38%), Gaps = 36/289 (12%)
Query: 127 VFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACA 186
D CPHR APLS G I Q G+L C YHG G +P P C
Sbjct: 19 ALEDFCPHRGAPLSLGSI-QDGKLVCGYHGLVMDCDGRTASMPAQRVQAFP-------CI 70
Query: 187 AVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLME 246
+P+ ++G +W WP A + PH+ ++P++ G + Y ++++
Sbjct: 71 RAFPAQERHGFIWVWPGDAA----LADPALIPHLEWAENPAWAYGGGLYHIACDYRLMID 126
Query: 247 NLMDPAHLTYAH---YGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAK--------- 294
NLMD H TY H G + V EG R I F + G +A
Sbjct: 127 NLMDLTHETYVHASSIGQKEIDEAPVSTRVEGDRLITGRF----MEGILAPPFWRAALRG 182
Query: 295 ---QDSESAKFLAPCVFVVYFDLLENQENGSASSGG--AEEKLKQRRVAMIFICAPVSPG 349
D C F +L A GG A K + + FI P +
Sbjct: 183 NGLADDVPVDRWQICRFTPPSHVLIEVGVAHAGRGGYDAPADCKASSIVVDFI-TPETDT 241
Query: 350 NSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMA 398
+ W R+F+ +++ R GQ I DL +L ++R ++A
Sbjct: 242 SIWYFWGMARSFRPEDNELTAR--IREGQGTIFAEDLEMLEQQQRNLLA 288
>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp.
japonica GN=CAO PE=2 SV=1
Length = 541
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/405 (22%), Positives = 154/405 (38%), Gaps = 70/405 (17%)
Query: 47 SSKPSKLFTTLSPSSQVSTEATD--PPETEPETNSQEEKFD--WFSQWYPLMPVCDLDKR 102
SS + T+L+PS+ ++ + PP + + ++ + WYP+ DL
Sbjct: 173 SSASTAECTSLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKD- 231
Query: 103 VPHAKKVLGLDVVVWWDRNENEWRVF----------ADACPHRLAPLSEGRIDQWGRLQC 152
D +V D E +W +F + C HR PL G +++ GR+QC
Sbjct: 232 ----------DTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNE-GRIQC 280
Query: 153 PYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDII 212
PYHGW +S G C+ +P + + P Q G++W WP
Sbjct: 281 PYHGWEYSTDGKCEKMPSTKMLNVRIRS--------LPCFEQEGMVWIWPG--------- 323
Query: 213 KTKKPPH--IPELDDPSFTKMFGS--RDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPK 268
PP IP L PS + ++P + +L++NL+D AH + H
Sbjct: 324 --NDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSV 381
Query: 269 VMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGA 328
L +K + G+ + +F PC+ + + + + S+
Sbjct: 382 PSL-------VKFLTPSSGLQGYWDPYPID-MEFRPPCMVLSTIGISKPGKLEGKSTKQC 433
Query: 329 EEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIF--HIGQNLILDSDL 386
L Q + IC P S +R+++ +F WI V I H + ++ +
Sbjct: 434 STHLHQ-----LHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAEKVLNEDLR 488
Query: 387 CLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGG 431
+L +ER I NW P D L + +R+W G
Sbjct: 489 LVLGQQERMINGANVWNW------PVSYDKLGIRYRLWRDAIERG 527
>sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur
subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5
SV=1
Length = 346
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 136/328 (41%), Gaps = 36/328 (10%)
Query: 88 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQW 147
+ WY D ++ P A+ L VV++ ++ D C HRLAPLS G ++
Sbjct: 5 NTWYVAGMATDCSRK-PLARTFLNEKVVLF-RTHDGHAVALEDRCCHRLAPLSLGDVEDA 62
Query: 148 GRLQCPYHGWCFSGSGDCKFIP---QAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDI 204
G ++C YHG F+ SG C IP Q PP C +P ++G+LW W
Sbjct: 63 G-IRCRYHGMVFNASGACVEIPGQEQIPP---------GMCVRRFPLVERHGLLWIW--- 109
Query: 205 APQCKDIIKTKKPPHIPEL--DDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMM 262
D + + EL P + G Y+++++NL+D HL + H +
Sbjct: 110 ---MGDPARANPDDIVDELWNGAPEWRTDSGYIHYQANYQLIVDNLLDFTHLAWVHPTTL 166
Query: 263 RTRKP---KVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPC----VFVVYFDLL 315
T K +++R+ K++ + +N ++ AKF ++ L
Sbjct: 167 GTDSAASLKPVIERDTTGTGKLTITRWYLNDDMSNLHKGVAKFEGKADRWQIYQWSPPAL 226
Query: 316 ENQENGSASSGGAEEKLKQRRVAMIF----ICAPVSPGNSRVIWAFPRNFQIWIDKVVPR 371
+ GSA +G + ++ A+ F I P + S + RNF + D+ +
Sbjct: 227 LRMDTGSAPTGTGAPEGRRVPEAVQFRHTSIQTPETETTSHYWFCQARNFDL-DDEALTE 285
Query: 372 WIFHIGQNLILDSDLCLLHVEERKIMAV 399
I+ G + + D ++ +++ + V
Sbjct: 286 KIYQ-GVVVAFEEDRTMIEAQQKILSQV 312
>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=CAO PE=1 SV=1
Length = 536
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 142/362 (39%), Gaps = 74/362 (20%)
Query: 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFA----------DACPHRLAPL 139
WYP+ DL D +V + E W +F + C HR PL
Sbjct: 221 WYPVAFTADLKH-----------DTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPL 269
Query: 140 SEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILW 199
G +++ GR+QCPYHGW +S G+CK +P K P Q G++W
Sbjct: 270 DLGTVNE-GRIQCPYHGWEYSTDGECKKMPST--------KLLKVKIKSLPCLEQEGMIW 320
Query: 200 FWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGS--RDVPYGYEVLMENLMDPAHLTYA 257
WP P P +P L PS + D+P + +L++NL+D AH +
Sbjct: 321 IWPGDEPPA---------PILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFT 371
Query: 258 HYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSE--SAKFLAPCVFVVYFDLL 315
H + P + F +G D +F PC+ +
Sbjct: 372 HTSTFA---------KGWSVPSLVKF-LTPTSGLQGYWDPYPIDMEFKPPCIVLSTI--- 418
Query: 316 ENQENGSASSGGAEEKLKQR---RVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRW 372
G + G E K Q+ + + +C P S +R+++ +F I K +P +
Sbjct: 419 -----GISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAP-ILKNLP-F 471
Query: 373 IFHIGQNL---ILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYS 429
+ H+ ++ +L+ DL L+ ++ +++ G W +P D L V +R+W
Sbjct: 472 MEHLWRHFAEQVLNEDLRLVLGQQERMLN-GANIWN----LPVAYDKLGVRYRLWRNAVD 526
Query: 430 GG 431
G
Sbjct: 527 RG 528
>sp|P71875|KSHA_MYCTU 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium tuberculosis GN=kshA PE=1 SV=2
Length = 386
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 149
W+ L D + PH + G +VV+ D + + +V C H LSEG + +
Sbjct: 26 WHCLGVAKDYLEGKPHGVEAFGTKLVVFAD-SHGDLKVLDGYCRHMGGDLSEGTV-KGDE 83
Query: 150 LQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCK 209
+ CP+H W + G G CK +P A T + A + + V++G+L+ W D
Sbjct: 84 VACPFHDWRWGGDGRCKLVPYAR------RTPRMARTRSWTTDVRSGLLFVWHDHEGNPP 137
Query: 210 DIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEV--LMENLMDPAHLTYAHYGM 261
D + P IPE +T +R + G +++N+ D AH Y H+G+
Sbjct: 138 D--PAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTDMAHFFYIHFGL 189
>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain HR199 / DSM 7063) GN=vanA PE=3 SV=1
Length = 354
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 116/311 (37%), Gaps = 34/311 (10%)
Query: 106 AKKVLGLDV----VVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSG 161
A K LG + +V++ E D CPHR APLS G + G+L C YHG
Sbjct: 17 ADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRD-GKLICGYHGLEMGC 75
Query: 162 SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIP 221
G +P G P C Y + G +W WP +++ H+
Sbjct: 76 EGKTLAMPGQRVQGFP-------CIKSYAVEERYGFIWVWPGD----RELADPALIHHLE 124
Query: 222 ELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMM------------RTRKPKV 269
D+P + G + Y ++++NLMD H TY H + R V
Sbjct: 125 WADNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIGQKEIDEAPVSTRVEGDTV 184
Query: 270 MLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGG-- 327
+ R + F + + G D ++ C F +L A GG
Sbjct: 185 ITSRYMDNVMAPPFWRAALRGNGLADDVPVDRWQI-CRFAPPSHVLIEVGVAHAGKGGYD 243
Query: 328 AEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLC 387
A + K + + FI P S + W RNF+ ++ +GQ I DL
Sbjct: 244 APAEYKAGSIVVDFI-TPESDTSIWYFWGMARNFRPQGTELTE--TIRVGQGKIFAEDLD 300
Query: 388 LLHVEERKIMA 398
+L ++R ++A
Sbjct: 301 MLEQQQRNLLA 311
>sp|A0R4R3|KSHA_MYCS2 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=kshA PE=1 SV=1
Length = 383
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 149
W+ L PV + PH+ + G +VV+ D ++ E V C H LS+G + +
Sbjct: 24 WHCLGPVKNFSDGKPHSVNIFGTKLVVFAD-SKGELNVLDAYCRHMGGDLSKGTV-KGDE 81
Query: 150 LQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA---P 206
+ CP+H W + G G CK +P A T + A + + V+ G+L+ W D P
Sbjct: 82 VACPFHDWRWGGDGKCKLVPYAK------RTPRLARTRSWHTDVRGGLLFVWHDHEGNPP 135
Query: 207 QCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEV--LMENLMDPAHLTYAHYGM 261
Q + I P IPE +T + + G +++N+ D AH Y H+G+
Sbjct: 136 QPEVRI-----PEIPEWHSGEWTDWKWNSMLIEGSNCREIIDNVTDMAHFFYIHFGL 187
>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1
OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1
Length = 347
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 121/297 (40%), Gaps = 38/297 (12%)
Query: 122 ENEWRVFA--DACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP---QAPPDGP 176
+ + RV A + C HR APL GR + ++C YHG F+ SG C IP Q PP
Sbjct: 36 DTQGRVVALENRCCHRSAPLHIGR-QEGDCVRCLYHGLKFNPSGACVEIPGQEQIPP--- 91
Query: 177 PVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPEL---DDPSFTKMFG 233
K C YP +N ++W W + P I + D P + G
Sbjct: 92 ------KTCIKSYPVVERNRLVWIWMGDPARAN-------PDDIVDYFWHDSPEWRMKPG 138
Query: 234 SRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKP---KVMLDREGGRPIKISFEKIDING 290
Y+++++NL+D HL + H + T K +++R+ K++ + +N
Sbjct: 139 YIHYQANYKLIVDNLLDFTHLAWVHPTTLGTDSAASLKPVIERDTTGTGKLTITRWYLND 198
Query: 291 FIAKQDSESAKFLAPC----VFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIF----I 342
++ AKF ++ L + GSA +G + ++ A+ F I
Sbjct: 199 DMSNLHKGVAKFEGKADRWQIYQWSPPALLRMDTGSAPTGTGAPEGRRVPEAVQFRHTSI 258
Query: 343 CAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAV 399
P + S + RNF + D+ + I+ G + + D ++ E+ + V
Sbjct: 259 QTPETETTSHYWFCQARNFDL-DDEALTEKIYQ-GVVVAFEEDRTMIEAHEKILSQV 313
>sp|Q52185|POBA_PSEPS Phenoxybenzoate dioxygenase subunit alpha OS=Pseudomonas
pseudoalcaligenes GN=pobA PE=2 SV=1
Length = 409
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 14/177 (7%)
Query: 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 149
W P+ D+ R P ++LG D+V++ D+ ++ C HR L G +++ G
Sbjct: 45 WQPVALSADVTDR-PQMVRILGEDLVLFRDKAGRPGLLYP-RCMHRGTSLYYGHVEEAG- 101
Query: 150 LQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFW---PDIAP 206
++C YHGW F+ G C P P G +++ YP + G+++ + P+ P
Sbjct: 102 IRCCYHGWLFAVDGTCLNQPCEPEGGLRREAARQPW---YPVEERYGLVFAYMGPPEKKP 158
Query: 207 QCK--DIIKTKKPPHIPELDDPSFTKM---FGSRDVPYGYEVLMENLMDPAHLTYAH 258
DI++ + E+ F +VPY + EN+MDP H+ H
Sbjct: 159 VLPRYDILEDLEEGEFIEVISGGFVSYADHVEDPNVPYHWLQNWENIMDPYHVYILH 215
>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas
testosteroni GN=cbaA PE=3 SV=1
Length = 432
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 149
W P + +L+ + +L + +V + V CPHR L GR+++ G
Sbjct: 27 WIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRGVSLFMGRVEE-GG 85
Query: 150 LQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFW 201
L+C YHGW FS G C +P P+ ++ + A YP G++W +
Sbjct: 86 LRCVYHGWKFSAEGKCVDMPSVRPEDEFKNSVR---VARYPVKEMAGVVWVY 134
>sp|Q10499|AIF1_SCHPO Apoptosis-inducing factor 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=aif1 PE=3 SV=3
Length = 611
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 108 KVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCF-SGSGDCK 166
KV+G + V R N + A C H APL++G + G + CP+HG CF + +GD +
Sbjct: 73 KVVGTEFGVLLVRARNTYFATAGKCSHYGAPLAKGVVTSDGHIVCPWHGACFNAATGDVE 132
Query: 167 FIP 169
P
Sbjct: 133 DTP 135
>sp|Q17938|DAF36_CAEEL Cholesterol desaturase daf-36 OS=Caenorhabditis elegans GN=daf-36
PE=1 SV=2
Length = 428
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 132 CPHRLAPLS-EGRIDQWGRLQCPYHGWCFSG-SGDCKFIPQAPPDGPPVHTSKKACAAVY 189
CPH A + GR+ + +QCP+HGW FS +G C +P P ++A +
Sbjct: 122 CPHIGANFNIGGRVVRDNCIQCPFHGWIFSAETGKCVEVPYDEGRIP-----EQAKVTTW 176
Query: 190 PSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFG--SRDVPYGYEVLMEN 247
P +N ++ W C + P I E+ D F + G +V + + EN
Sbjct: 177 PCIERNNNIYLW----YHCDGAEPEWEIPEITEITD-GFWHLGGRTEHEVMCHIQEIPEN 231
Query: 248 LMDPAHLTYAH 258
D AHL Y H
Sbjct: 232 GADIAHLNYLH 242
>sp|Q96NN9|AIFM3_HUMAN Apoptosis-inducing factor 3 OS=Homo sapiens GN=AIFM3 PE=1 SV=1
Length = 605
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 116 VWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCKFIP 169
V ++ E+ CPH APL +G + + GR++CP+HG CF+ +GD + P
Sbjct: 93 VLLVKDNGEFHALGHKCPHYGAPLVKGVLSR-GRVRCPWHGACFNISTGDLEDFP 146
>sp|P23099|XYLX_PSEPU Toluate 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=xylX
PE=3 SV=1
Length = 454
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 16/212 (7%)
Query: 73 TEPETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADAC 132
T+P E K + W L + ++ + +G + + E F +AC
Sbjct: 33 TDPRLFDLEMKHIFEGNWIYLAHESQIPEKNDYYTTQMGRQPIFITRNKDGELNAFVNAC 92
Query: 133 PHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPP-------VHTSKKAC 185
HR A L R C +HGW FS SG + G P H KK
Sbjct: 93 SHRGATLCRFRSGNKATHTCSFHGWTFSNSGKLLKVKDPKGAGYPDSFDCDGSHDLKK-- 150
Query: 186 AAVYPSAVQNGILW--FWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMF-GSRDVPY--G 240
V A G L+ D+AP + + +++K + P ++ GS Y
Sbjct: 151 --VARFASYRGFLFGSLREDVAPLEEFLGESRKVIDMVVDQSPEGLEVLRGSSTYVYEGN 208
Query: 241 YEVLMENLMDPAHLTYAHYGMMRTRKPKVMLD 272
++V +EN D H++ H+ T++ + + D
Sbjct: 209 WKVQVENGADGYHVSTVHWNYAATQQQRKLRD 240
>sp|Q3TY86|AIFM3_MOUSE Apoptosis-inducing factor 3 OS=Mus musculus GN=Aifm3 PE=2 SV=1
Length = 605
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 116 VWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCKFIP 169
V ++ E+ CPH APL +G + + GR++CP+HG CF+ +GD + P
Sbjct: 93 VLLVKDNGEFHALGHKCPHYGAPLVKGVLSR-GRVRCPWHGACFNISTGDLEDFP 146
>sp|Q51494|NDOB_PSEAI Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas aeruginosa
GN=ndoB PE=3 SV=1
Length = 449
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGVDEVIVSRQNDGSIRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGANGELQSVP 118
>sp|O52382|NDOB_RALSP Naphthalene 1,2-dioxygenase subunit alpha OS=Ralstonia sp. GN=nagAc
PE=1 SV=1
Length = 447
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 57 MGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGSNGELQSVP 116
>sp|P0A111|NDOB_PSEU8 Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas sp.
(strain C18) GN=doxB PE=1 SV=1
Length = 449
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>sp|P0A110|NDOB_PSEPU Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=ndoB PE=1 SV=1
Length = 449
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>sp|P0ABR7|YEAW_ECOLI Putative dioxygenase subunit alpha YeaW OS=Escherichia coli (strain
K12) GN=yeaW PE=3 SV=1
Length = 374
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 36/223 (16%)
Query: 107 KKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG--- 163
++++G +V+ R++ R F + CPHR L G + CPYH W F G
Sbjct: 65 REIIGESIVLVRGRDK-VLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLA 123
Query: 164 ---DCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDI------IKT 214
+C+ + D A + P ++ + + ++ P + +
Sbjct: 124 HARNCENVANFDSDK----------AQLVPVRLEEYAGFVFINMDPNATSVEDQLPGLGA 173
Query: 215 KKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDR- 273
K PE+ D F +R P ++ +++N ++ H AH G + V +DR
Sbjct: 174 KVLEACPEVHDLKLAARFTTR-TPANWKNIVDNYLECYHCGPAHPGFSDS----VQVDRY 228
Query: 274 ----EGGRPIKISFEKIDINGFIAKQDSESA---KFLAPCVFV 309
G ++ F K F ++ +++A +L PC +
Sbjct: 229 WHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTML 271
>sp|P0ABR8|YEAW_ECO57 Putative dioxygenase subunit alpha YeaW OS=Escherichia coli O157:H7
GN=yeaW PE=3 SV=1
Length = 374
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 36/223 (16%)
Query: 107 KKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG--- 163
++++G +V+ R++ R F + CPHR L G + CPYH W F G
Sbjct: 65 REIIGESIVLVRGRDK-VLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLA 123
Query: 164 ---DCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDI------IKT 214
+C+ + D A + P ++ + + ++ P + +
Sbjct: 124 HARNCENVANFDSDK----------AQLVPVRLEEYAGFVFINMDPNATSVEDQLPGLGA 173
Query: 215 KKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDR- 273
K PE+ D F +R P ++ +++N ++ H AH G + V +DR
Sbjct: 174 KVLEACPEVHDLKLAARFTTR-TPANWKNIVDNYLECYHCGPAHPGFSDS----VQVDRY 228
Query: 274 ----EGGRPIKISFEKIDINGFIAKQDSESA---KFLAPCVFV 309
G ++ F K F ++ +++A +L PC +
Sbjct: 229 WHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTML 271
>sp|O07824|NDOB_PSEFL Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas
fluorescens GN=ndoB PE=3 SV=1
Length = 449
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G+D V+ +++ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGIDEVIVSRQSDGSIRAFLNVCRHRGKTLVNAEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>sp|Q05183|PHT3_PSEPU Phthalate 4,5-dioxygenase oxygenase subunit OS=Pseudomonas putida
GN=pht3 PE=2 SV=1
Length = 439
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 95 PVCDLDK-----RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 149
PVC L++ P ++ G D+VV+ D + V + CPHR L GR + G
Sbjct: 29 PVCLLEEVSEPDGTPVRARLFGEDLVVFRD-TDGRVGVMDEYCPHRRVSLIYGRNENSG- 86
Query: 150 LQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCK 209
L+C YHGW G+ + P + +K Y + G +W + + PQ
Sbjct: 87 LRCLYHGWKMDVDGNVVEMVSEPAAS---NMCQKVKHTAYKTREWGGFVWAY--MGPQ-- 139
Query: 210 DIIKTKKPP 218
D I PP
Sbjct: 140 DAIPEFVPP 148
>sp|Q0T1Y1|HCAE_SHIF8 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaE
PE=3 SV=1
Length = 453
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG---DCK 166
+G D VV + + + F + C HR +S CPYHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 167 FIPQAPPDG 175
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|A8A344|HCAE_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O9:H4 (strain HS) GN=hcaE PE=3 SV=1
Length = 453
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG---DCK 166
+G D VV + + + F + C HR +S CPYHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 167 FIPQAPPDG 175
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|Q3YZ15|HCAE_SHISS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella sonnei (strain Ss046) GN=hcaE PE=3 SV=1
Length = 453
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG---DCK 166
+G D VV + + + F + C HR +S CPYHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 167 FIPQAPPDG 175
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|Q31XV2|HCAE_SHIBS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaE
PE=3 SV=1
Length = 453
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG---DCK 166
+G D VV + + + F + C HR +S CPYHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 167 FIPQAPPDG 175
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|P0ABR5|HCAE_ECOLI 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli (strain K12) GN=hcaE PE=1 SV=1
Length = 453
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG---DCK 166
+G D VV + + + F + C HR +S CPYHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 167 FIPQAPPDG 175
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|P0ABR6|HCAE_ECO57 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O157:H7 GN=hcaE PE=3 SV=1
Length = 453
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG---DCK 166
+G D VV + + + F + C HR +S CPYHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 167 FIPQAPPDG 175
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|P07769|BENA_ACIAD Benzoate 1,2-dioxygenase subunit alpha OS=Acinetobacter sp. (strain
ADP1) GN=benA PE=3 SV=2
Length = 461
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 120 RNEN-EWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG 163
RN N E +AC HR A L + CP+HGW F+ SG
Sbjct: 82 RNRNGELNAMINACSHRGAQLCRHKRGNKTTYTCPFHGWTFNNSG 126
>sp|Q8G8B6|CARAA_PSERE Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Pseudomonas resinovorans GN=carAa PE=1 SV=1
Length = 384
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 18/182 (9%)
Query: 81 EEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLS 140
+ K + + WYP+M ++D+ P K+LG +++V +R + + D C HR LS
Sbjct: 20 DAKLGFRNHWYPVMFSKEIDEGEPKTLKLLGENLLV--NRIDGKLYCLKDRCLHRGVQLS 77
Query: 141 -EGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILW 199
+ + C YH W + P + K YP G ++
Sbjct: 78 VKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQK---LKTYPVQEAKGCVF 134
Query: 200 FW---PDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTY 256
+ D P +D PP+ LDD + ++ + + + +EN DP+H+ Y
Sbjct: 135 IYLGDGDPPPLARDT-----PPNF--LDD-DMEILGKNQIIKSNWRLAVENGFDPSHI-Y 185
Query: 257 AH 258
H
Sbjct: 186 IH 187
>sp|Q83K39|HCAE_SHIFL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri GN=hcaE PE=3 SV=1
Length = 453
Score = 37.0 bits (84), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG---DCK 166
+G D VV + + + F + C HR +S CPYHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNSRAFTCPYHGWSYGINGELIDVP 122
Query: 167 FIPQAPPDG 175
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|Q8GI16|CARAC_PSERE Ferredoxin CarAc OS=Pseudomonas resinovorans GN=carAc PE=1 SV=1
Length = 107
Score = 35.8 bits (81), Expect = 0.83, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 130 DACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPV 178
D C H +A LSEG +D ++CP+HG F+ C +P + P P+
Sbjct: 44 DTCTHGIASLSEGTLDG-DVIECPFHGGAFN---VCTGMPASSPCTVPL 88
>sp|D5IGG0|CARAA_SPHSX Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Sphingomonas sp. GN=carAa PE=1 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 83 KFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG 142
K + + WYP+ ++ + P K+LG +++ +R + D C HR LS+
Sbjct: 22 KLGFRNHWYPVRLASEIAEGTPVPVKLLGEKILL--NRVGGKVYAIQDRCLHRGVTLSD- 78
Query: 143 RIDQWGR--LQCPYHGWCF 159
R++ + + + C YHGW +
Sbjct: 79 RVECYSKNTISCWYHGWTY 97
>sp|Q9SZR0|CHMO_ARATH Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana
GN=At4g29890 PE=2 SV=2
Length = 422
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 48 SKPSKLFTTLSPSSQVSTEATDPPE--TEPETNSQEEKFDWFSQWYPLMPVCDLDKRVPH 105
S SKL T P + +T P T+P+ S E ++ W + + +
Sbjct: 52 SDISKLVTEFDPKIPLERASTPPSSWYTDPQFYSFELDRVFYGGWQAVGYSDQIKESRDF 111
Query: 106 AKKVLG-LDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR---LQCPYHGWCFSG 161
LG +D VV D N + F + C H + L+ G GR C YHGW +S
Sbjct: 112 FTGRLGDVDFVVCRDEN-GKIHAFHNVCSHHASILASGN----GRKSCFVCLYHGWTYSL 166
Query: 162 SG 163
SG
Sbjct: 167 SG 168
>sp|Q51601|CBDA_BURCE 2-halobenzoate 1,2-dioxygenase large subunit OS=Burkholderia
cepacia GN=cbdA PE=1 SV=3
Length = 465
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 130 DACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPP 177
+AC HR A L + C +HGW FS +G + D P
Sbjct: 96 NACSHRGAELCRRKQGNRSTFTCQFHGWTFSNTGKLLKVKDGQDDNYP 143
>sp|O85673|ANTDA_ACIAD Anthranilate 1,2-dioxygenase large subunit OS=Acinetobacter sp.
(strain ADP1) GN=antA PE=1 SV=1
Length = 471
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 122 ENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSG 163
+ E +AC HR A L+ CP+H WC+ G
Sbjct: 83 KGELHAMVNACEHRGATLTRVAKGNQSVFTCPFHAWCYKSDG 124
>sp|P34239|LST4_YEAST Protein LST4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=LST4 PE=1 SV=1
Length = 828
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 180 TSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPY 239
T+K A A+ +AV + +++ T PP + + D K+FGSRD+PY
Sbjct: 42 TTKTAAGALLDTAVN----------VEKPSEMLSTTSPPILDHISDDLKLKLFGSRDIPY 91
Query: 240 G 240
Sbjct: 92 S 92
>sp|A6ZZE9|LST4_YEAS7 Protein LST4 OS=Saccharomyces cerevisiae (strain YJM789) GN=LST4
PE=3 SV=1
Length = 828
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 180 TSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPY 239
T+K A A+ +AV + +++ T PP + + D K+FGSRD+PY
Sbjct: 42 TTKTAAGALLDTAVN----------VEKPSEMLSTTSPPILDHISDDLKLKLFGSRDIPY 91
Query: 240 G 240
Sbjct: 92 S 92
>sp|O04121|CHMO_SPIOL Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO
PE=1 SV=1
Length = 439
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 54 FTTLSPSSQVS-----------TEATDPPE---TEPETNSQEEKFDWFSQWYPLMPVCDL 99
TT +PSS S +A PP TEP S E + ++ W + + D
Sbjct: 70 LTTTTPSSIQSLVHEFDPQIPPEDAHTPPSSWYTEPAFYSHELERIFYKGW-QVAGISDQ 128
Query: 100 DKRVPHAKKVLGLDVVVWWDRNENEWRV--FADACPHRLAPLSEGRIDQWGRLQCPYHGW 157
K P+ L V + + E +V F + C HR + L+ G + CPYHGW
Sbjct: 129 IKE-PNQYFTGSLGNVEYLVSRDGEGKVHAFHNVCTHRASILACGS-GKKSCFVCPYHGW 186
Query: 158 CFSGSGDCKFIPQAPPD 174
+ G +A P+
Sbjct: 187 VYGMDGSLAKASKAKPE 203
>sp|Q52438|BPHA1_PSES1 Biphenyl dioxygenase subunit alpha OS=Pseudomonas sp. (strain
KKS102) GN=bphA1 PE=3 SV=1
Length = 458
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 110 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP 169
+G D V+ + + +VF + C HR + C YHGW + +G+ +P
Sbjct: 79 MGEDPVIMVRQKDGSIKVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDIAGNLVNVP 138
>sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO
PE=2 SV=1
Length = 438
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 122 ENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPD 174
E + F + C HR + L+ G + CPYHGW + +G +A P+
Sbjct: 153 EGKVHAFHNVCTHRASILACGS-GKKSCFVCPYHGWVYGMNGSLTKASKATPE 204
>sp|Q98T94|GLIS2_XENLA Zinc finger protein GLIS2 OS=Xenopus laevis GN=glis2 PE=2 SV=1
Length = 492
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 37/215 (17%)
Query: 177 PVHTSKKACAAVY--PSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTK---- 230
P + C Y PS+++ I I+ Q + ++K +PP +P D ++T
Sbjct: 282 PYYCKMPGCQKRYTDPSSLRKHIKAHGHFISHQQRQLLKIHQPPKLPATGDSNYTNGTQL 341
Query: 231 -------MFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISF 283
+FGS+ +P L +D + L + P ML G P+ ++
Sbjct: 342 IIPNPAAIFGSQSLPI---PLTPGPLDLSSLACSSVASALAGLPNPMLTL-AGSPLNLA- 396
Query: 284 EKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFIC 343
G + Q +A P + +V +EN++ G + E+ +
Sbjct: 397 -----KGSLLSQAYSAAGLGLPLISLVTSGKVENEKRPKGQRGDSSERTDGSK------- 444
Query: 344 APVSPGNSRVIWAFPRNF-----QIWIDKVVPRWI 373
+ PG+ + PR + + ++P W+
Sbjct: 445 --LRPGSIEGLSLLPRGVLDLSPGVGSESLLPGWV 477
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,541,121
Number of Sequences: 539616
Number of extensions: 9275242
Number of successful extensions: 19312
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 19217
Number of HSP's gapped (non-prelim): 62
length of query: 539
length of database: 191,569,459
effective HSP length: 122
effective length of query: 417
effective length of database: 125,736,307
effective search space: 52432040019
effective search space used: 52432040019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)