Query 009261
Match_columns 539
No_of_seqs 383 out of 2239
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 22:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02518 pheophorbide a oxygen 100.0 1.1E-96 2E-101 798.4 46.4 439 76-539 77-538 (539)
2 PLN02281 chlorophyllide a oxyg 100.0 1.3E-55 2.8E-60 469.9 34.1 315 83-435 214-534 (536)
3 PLN00095 chlorophyllide a oxyg 100.0 2.3E-48 4.9E-53 398.3 24.8 290 78-391 61-371 (394)
4 COG4638 HcaE Phenylpropionate 100.0 1.9E-41 4.2E-46 357.2 22.6 326 73-431 11-358 (367)
5 TIGR03229 benzo_1_2_benA benzo 100.0 7.8E-33 1.7E-37 294.7 21.0 189 73-263 22-220 (433)
6 TIGR03228 anthran_1_2_A anthra 100.0 1.8E-32 3.8E-37 291.8 10.4 187 73-263 22-218 (438)
7 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 2.6E-31 5.7E-36 242.3 14.0 132 74-206 2-133 (138)
8 cd04338 Rieske_RO_Alpha_Tic55 100.0 3.2E-31 6.9E-36 240.7 13.6 127 74-205 2-128 (134)
9 cd03537 Rieske_RO_Alpha_PrnD T 100.0 2.1E-30 4.5E-35 231.3 13.1 114 88-204 2-116 (123)
10 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 1.2E-28 2.7E-33 222.2 12.1 116 80-205 8-123 (129)
11 cd03531 Rieske_RO_Alpha_KSH Th 100.0 2.4E-28 5.2E-33 216.1 12.7 110 89-206 1-110 (115)
12 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 4.8E-28 1E-32 222.6 13.5 118 82-204 14-132 (144)
13 cd03532 Rieske_RO_Alpha_VanA_D 99.9 6.7E-28 1.5E-32 213.6 11.8 111 86-205 2-112 (116)
14 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 1.3E-27 2.9E-32 217.5 13.2 117 82-204 7-125 (136)
15 cd03545 Rieske_RO_Alpha_OHBDO_ 99.9 9.4E-28 2E-32 221.8 10.3 132 73-205 8-146 (150)
16 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 3.7E-27 8E-32 212.3 11.3 122 83-205 2-124 (128)
17 cd03539 Rieske_RO_Alpha_S5H Th 99.9 7.5E-27 1.6E-31 210.5 10.9 116 90-206 1-126 (129)
18 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 4.4E-26 9.6E-31 202.2 11.7 113 89-205 1-114 (118)
19 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 6.2E-26 1.3E-30 203.1 11.4 117 88-205 1-119 (123)
20 cd03469 Rieske_RO_Alpha_N Ries 99.9 7.6E-26 1.7E-30 200.6 10.7 113 90-205 1-114 (118)
21 cd03538 Rieske_RO_Alpha_AntDO 99.9 5.9E-26 1.3E-30 209.0 10.2 131 74-205 7-142 (146)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 4.1E-25 8.8E-30 197.8 11.1 115 90-205 1-117 (123)
23 cd03528 Rieske_RO_ferredoxin R 99.9 4.7E-24 1E-28 183.0 12.0 96 90-200 1-97 (98)
24 cd03530 Rieske_NirD_small_Baci 99.9 7.5E-24 1.6E-28 181.9 11.9 97 90-201 1-98 (98)
25 cd03529 Rieske_NirD Assimilato 99.9 1E-23 2.2E-28 182.9 11.7 98 90-201 1-103 (103)
26 cd03474 Rieske_T4moC Toluene-4 99.9 3.3E-23 7.1E-28 181.2 12.6 101 90-205 1-102 (108)
27 TIGR02377 MocE_fam_FeS Rieske 99.9 3.1E-23 6.8E-28 179.3 12.0 99 89-201 1-100 (101)
28 cd03542 Rieske_RO_Alpha_HBDO R 99.9 2.3E-23 5E-28 186.3 11.6 115 90-205 1-119 (123)
29 TIGR02378 nirD_assim_sml nitri 99.9 4.8E-23 1E-27 179.2 11.4 100 89-202 1-105 (105)
30 PRK09965 3-phenylpropionate di 99.9 1.8E-22 3.8E-27 176.1 11.4 101 89-204 2-103 (106)
31 cd03478 Rieske_AIFL_N AIFL (ap 99.9 2.9E-22 6.3E-27 171.1 10.8 92 93-199 3-95 (95)
32 PRK09511 nirD nitrite reductas 99.9 2.3E-21 5E-26 169.5 12.1 100 89-201 3-107 (108)
33 PF13806 Rieske_2: Rieske-like 99.9 3.5E-21 7.7E-26 167.1 11.2 98 89-200 1-103 (104)
34 PF00355 Rieske: Rieske [2Fe-2 99.8 1.5E-20 3.3E-25 160.8 10.0 94 89-196 1-97 (97)
35 COG2146 {NirD} Ferredoxin subu 99.8 8.4E-20 1.8E-24 158.9 12.0 102 88-202 3-105 (106)
36 cd03467 Rieske Rieske domain; 99.8 1.4E-19 3E-24 155.3 11.6 92 90-195 1-93 (98)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 3.9E-19 8.5E-24 150.6 9.8 88 93-195 2-89 (91)
38 cd08878 RHO_alpha_C_DMO-like C 99.8 1.3E-18 2.8E-23 165.5 12.1 178 233-429 4-196 (196)
39 PF08417 PaO: Pheophorbide a o 99.8 2.9E-18 6.2E-23 145.7 8.9 92 302-406 1-92 (92)
40 cd03476 Rieske_ArOX_small Smal 99.7 2.4E-17 5.2E-22 147.8 10.7 97 91-201 4-114 (126)
41 cd03471 Rieske_cytochrome_b6f 99.6 1.2E-15 2.5E-20 136.1 11.5 89 101-205 22-114 (126)
42 cd03473 Rieske_CMP_Neu5Ac_hydr 99.6 4.8E-16 1E-20 133.7 8.5 71 96-169 14-88 (107)
43 TIGR02694 arsenite_ox_S arseni 99.6 1.2E-15 2.6E-20 137.2 10.5 96 91-200 7-115 (129)
44 cd00680 RHO_alpha_C C-terminal 99.6 4.3E-14 9.2E-19 133.4 13.7 170 233-429 3-187 (188)
45 cd03470 Rieske_cytochrome_bc1 99.5 2.9E-14 6.2E-19 127.9 10.6 93 95-200 5-125 (126)
46 cd08885 RHO_alpha_C_1 C-termin 99.4 2.3E-12 5.1E-17 123.4 15.2 170 233-429 4-189 (190)
47 PRK13474 cytochrome b6-f compl 99.4 7.4E-13 1.6E-17 125.8 11.1 87 100-202 73-163 (178)
48 cd08883 RHO_alpha_C_CMO-like C 99.4 4.1E-12 9E-17 120.4 15.2 166 234-429 5-174 (175)
49 cd08887 RHO_alpha_C_3 C-termin 99.4 1.2E-11 2.5E-16 117.7 14.4 169 234-429 5-184 (185)
50 cd08886 RHO_alpha_C_2 C-termin 99.3 2.4E-11 5.3E-16 116.0 13.8 168 233-427 4-181 (182)
51 TIGR01416 Rieske_proteo ubiqui 99.3 9.6E-12 2.1E-16 117.8 9.8 95 90-197 41-169 (174)
52 cd08884 RHO_alpha_C_GbcA-like 99.2 8E-11 1.7E-15 114.5 13.4 169 233-429 14-204 (205)
53 PF00848 Ring_hydroxyl_A: Ring 99.2 3.8E-11 8.2E-16 114.7 6.9 169 235-430 12-208 (209)
54 cd03475 Rieske_SoxF_SoxL SoxF 98.8 2E-08 4.3E-13 94.0 10.2 66 122-200 74-158 (171)
55 cd08880 RHO_alpha_C_ahdA1c-lik 98.7 2E-07 4.4E-12 91.9 13.9 172 234-429 5-221 (222)
56 cd08882 RHO_alpha_C_MupW-like 98.7 9.6E-08 2.1E-12 95.5 9.7 89 338-430 145-243 (243)
57 PF11723 Aromatic_hydrox: Homo 98.3 7.5E-06 1.6E-10 79.7 12.6 91 336-431 142-238 (240)
58 COG0723 QcrA Rieske Fe-S prote 98.1 7.3E-06 1.6E-10 78.0 7.5 64 124-200 100-164 (177)
59 cd08879 RHO_alpha_C_AntDO-like 98.1 2.9E-05 6.2E-10 77.4 11.4 30 234-263 5-34 (237)
60 cd08881 RHO_alpha_C_NDO-like C 98.0 1.8E-05 4E-10 77.2 8.4 30 234-263 10-40 (206)
61 KOG1671 Ubiquinol cytochrome c 97.7 5.8E-05 1.3E-09 71.4 5.4 73 96-170 92-190 (210)
62 TIGR03171 soxL2 Rieske iron-su 97.6 0.00012 2.5E-09 74.7 7.2 67 123-201 176-276 (321)
63 KOG1336 Monodehydroascorbate/f 96.3 0.0032 6.9E-08 67.6 3.4 38 134-172 1-39 (478)
64 PF13490 zf-HC2: Putative zinc 69.6 2.9 6.3E-05 28.6 1.5 33 421-468 4-36 (36)
65 TIGR02949 anti_SigH_actin anti 69.2 5.8 0.00012 33.0 3.4 46 420-480 11-56 (84)
66 PLN02518 pheophorbide a oxygen 66.8 10 0.00023 42.4 5.9 80 451-533 458-537 (539)
67 PRK10853 putative reductase; P 66.5 4 8.6E-05 36.2 2.1 17 459-475 6-22 (118)
68 cd03034 ArsC_ArsC Arsenate Red 63.5 4.7 0.0001 35.3 1.9 18 459-476 5-22 (112)
69 cd03033 ArsC_15kD Arsenate Red 62.8 4.9 0.00011 35.4 1.9 17 459-475 6-22 (113)
70 PF03960 ArsC: ArsC family; I 61.6 5.1 0.00011 34.7 1.8 18 459-476 2-19 (110)
71 COG1393 ArsC Arsenate reductas 60.9 5.7 0.00012 35.3 2.0 18 459-476 7-24 (117)
72 PRK10026 arsenate reductase; P 60.6 5.6 0.00012 36.5 1.9 17 459-475 8-24 (141)
73 cd03035 ArsC_Yffb Arsenate Red 58.0 6.8 0.00015 33.9 2.0 18 459-476 5-22 (105)
74 PF09740 DUF2043: Uncharacteri 57.0 6.3 0.00014 34.5 1.5 36 123-161 63-99 (110)
75 TIGR00014 arsC arsenate reduct 56.3 7.4 0.00016 34.1 1.9 18 459-476 5-22 (114)
76 PF14015 DUF4231: Protein of u 56.0 77 0.0017 27.1 8.4 27 455-481 3-29 (112)
77 PRK13344 spxA transcriptional 52.9 9.2 0.0002 34.6 2.0 18 459-476 6-23 (132)
78 TIGR01616 nitro_assoc nitrogen 50.5 10 0.00023 34.0 1.9 17 459-475 7-23 (126)
79 cd03036 ArsC_like Arsenate Red 49.2 11 0.00025 32.7 1.9 17 459-475 5-21 (111)
80 PRK12559 transcriptional regul 43.8 15 0.00033 33.1 2.0 18 459-476 6-23 (131)
81 cd03032 ArsC_Spx Arsenate Redu 41.2 18 0.00039 31.6 1.9 18 459-476 6-23 (115)
82 PRK01655 spxA transcriptional 38.7 21 0.00044 32.2 2.0 18 459-476 6-23 (131)
83 cd02977 ArsC_family Arsenate R 38.6 21 0.00045 30.5 1.9 18 459-476 5-22 (105)
84 TIGR01617 arsC_related transcr 38.4 21 0.00046 31.2 2.0 17 459-475 5-21 (117)
85 KOG4684 Uncharacterized conser 34.8 65 0.0014 31.5 4.7 19 451-469 180-198 (275)
86 KOG4684 Uncharacterized conser 32.7 8.9 0.00019 37.3 -1.4 20 451-470 91-110 (275)
87 COG1645 Uncharacterized Zn-fin 31.1 29 0.00064 31.4 1.6 30 127-160 26-55 (131)
88 PF07627 PSCyt3: Protein of un 30.7 99 0.0022 26.7 4.8 20 451-470 58-79 (101)
89 PF04066 MrpF_PhaF: Multiple r 29.0 2.3E+02 0.0049 21.4 6.0 22 506-527 34-55 (55)
90 cd03027 GRX_DEP Glutaredoxin ( 27.2 44 0.00095 26.2 1.9 17 460-476 8-24 (73)
91 PF09788 Tmemb_55A: Transmembr 26.9 12 0.00025 37.6 -1.8 20 451-470 76-95 (256)
92 COG5660 Predicted integral mem 24.7 77 0.0017 31.0 3.3 18 459-476 30-47 (238)
93 PF10039 DUF2275: Predicted in 24.3 2.3E+02 0.0049 28.0 6.6 38 451-490 7-44 (218)
94 PF04156 IncA: IncA protein; 24.0 3.3E+02 0.0072 25.6 7.7 7 506-512 44-50 (191)
95 PF05055 DUF677: Protein of un 22.3 2.5E+02 0.0055 29.6 6.9 13 468-480 171-183 (336)
96 PF04842 DUF639: Plant protein 21.1 7.1E+02 0.015 28.8 10.4 70 443-526 570-642 (683)
97 PF07009 DUF1312: Protein of u 21.1 1.2E+02 0.0027 26.4 3.8 62 90-157 37-102 (113)
No 1
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=1.1e-96 Score=798.43 Aligned_cols=439 Identities=37% Similarity=0.711 Sum_probs=360.2
Q ss_pred CcccccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccC
Q 009261 76 ETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYH 155 (539)
Q Consensus 76 ~~~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyH 155 (539)
+....+.+|+|+++||+||.++||++|+++.++++|++|||||++.+|+++||+|+||||+++||+|++++++.|+||||
T Consensus 77 ~~~~~~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYH 156 (539)
T PLN02518 77 GQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYH 156 (539)
T ss_pred cccccchhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCC
Confidence 34566778999999999999999988999999999999999998335999999999999999999999965579999999
Q ss_pred CeEEcCCCccccCCCCCCCCCC--CCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCCC-CCCCCCCceEe
Q 009261 156 GWCFSGSGDCKFIPQAPPDGPP--VHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIP-ELDDPSFTKMF 232 (539)
Q Consensus 156 GW~F~~~G~c~~iP~~~~~~~~--~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~p-~l~~~~~~~~~ 232 (539)
||+||.+|+|+.||+.+..++. ...++++|+++|||+|++|+||||+++++. +.+....+|.+| ++++++|....
T Consensus 157 GW~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~--~~a~~~~~P~~~~~~~~~~~~~~~ 234 (539)
T PLN02518 157 GWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGW--ERAQATKPPMLPDEFDDPEFSTVT 234 (539)
T ss_pred CCEEcCCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccc--cccccccCCCCcccccCCCceeEE
Confidence 9999999999999986543221 134567899999999999999999985421 112234567764 78888888777
Q ss_pred eEEEEecChhhHhhhCCCCCCcccccccccccCCCceEEeccCCeeEEEEEeecCCCccccc---CCcceeEEeccEEEE
Q 009261 233 GSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAK---QDSESAKFLAPCVFV 309 (539)
Q Consensus 233 ~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~~gf~~~---~~~~~~~F~~P~~~~ 309 (539)
..++++|+|++++||++|++|++|+|++++| +++.+.+..++++..+..||.+. ..+...+|.+||+++
T Consensus 235 ~~~~~~~~~~~l~EN~lD~sH~pfvH~~~~G--------~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~ 306 (539)
T PLN02518 235 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTG--------RRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYI 306 (539)
T ss_pred EEEEEecCchhHHHhCCccchhceecccccc--------CccccccccceEEEcCCCcccccccCCCceEEEEECCeEEE
Confidence 7889999999999999999999999999995 34444555566666666677652 234568899999877
Q ss_pred EeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcc-------cchhccchhHHHHHhhhhhh
Q 009261 310 VYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQ-------IWIDKVVPRWIFHIGQNLIL 382 (539)
Q Consensus 310 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~-------~~~~~~~prw~~h~~~~~Vl 382 (539)
......... + ........+.+++++||+++|+||+||++.|||. .|+ +++|||+.|+.+|+|+
T Consensus 307 ~~~~~~~~~---~------~~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~-k~~PrW~~h~~~n~Vl 376 (539)
T PLN02518 307 NKIEIDTKL---P------IVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWW-QLVPRWYEHWTSNKVY 376 (539)
T ss_pred Eeeeeeccc---c------CCCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhh-hcCchHHHHhhhccch
Confidence 654321100 0 0011234566789999999999999999999983 344 7899999999999999
Q ss_pred hhhHHHHHHHHHHhhhcCC-------ccccccccccCCCchHHHHHHHHHHHHhCCCCCCCCCC--CCCCCCC-CChhhh
Q 009261 383 DSDLCLLHVEERKIMAVGP-------ANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKF--DATLPPT-LPREQL 452 (539)
Q Consensus 383 dqD~~iL~~qe~~l~~~g~-------~~w~~~~~vpt~aD~~VvafRrWl~k~~~g~p~w~~~~--~~~lp~~-~~~~~l 452 (539)
|||+.+||.||+.++..+. ++|+++||+|+++|++|++||||+++|++|+++|++++ ..+||++ ++||||
T Consensus 377 ~~D~~~lh~Qe~~~~~~~~e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g~~~w~~~~~~~~~lp~~~~~~~~l 456 (539)
T PLN02518 377 DGDMIVLQGQEKIFLSKSGEGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSKRQM 456 (539)
T ss_pred HhHHHHHHHHHHHHhhccccccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcCCCCcccCCcccCCCCCCCCCHHHH
Confidence 9999999999999987765 58999999999999999999999999999999999875 3568888 599999
Q ss_pred hHhHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhcceEEe
Q 009261 453 MDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYH 532 (539)
Q Consensus 453 ldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~l~~~~~~~f~f~ 532 (539)
||||||||+||+||++|||+|+++|+++++++++++|+++++... ...+++++++++++++.|+.++++|+|||+
T Consensus 457 ldRy~~Ht~~C~SC~~Alk~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~ 531 (539)
T PLN02518 457 LDRFEQHTLNCSSCKGAYKAFQTLQKVLIGATVVFAATAGIPSDV-----QLRLILAGLALISAASAYALKELEKNFVFV 531 (539)
T ss_pred hHHHHhhCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHhhceec
Confidence 999999999999999999999999999999888877776555421 223455555677788899999999999999
Q ss_pred ccCCCCC
Q 009261 533 DYNHALR 539 (539)
Q Consensus 533 dy~ha~~ 539 (539)
||+||++
T Consensus 532 ~~~~~~~ 538 (539)
T PLN02518 532 DYVHAEI 538 (539)
T ss_pred CccCccC
Confidence 9999985
No 2
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=1.3e-55 Score=469.88 Aligned_cols=315 Identities=23% Similarity=0.473 Sum_probs=238.4
Q ss_pred cccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCC
Q 009261 83 KFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGS 162 (539)
Q Consensus 83 ~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~ 162 (539)
..-|+++||+||.++||++|+++.++++|++|||||+.+ |+++|++|+|||||+||++|++++ +.|+||||||+||.+
T Consensus 214 ~~~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~~d-G~v~A~~D~CPHRgaPLs~G~v~g-~~L~CPYHGW~FD~d 291 (536)
T PLN02281 214 SPHLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGED-GKPGCVRNTCAHRACPLDLGTVNE-GRIQCPYHGWEYSTD 291 (536)
T ss_pred chhhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEECCC-CeEEEEeCcCcCCCCccccceeeC-CEEEeCCCCCEECCC
Confidence 347899999999999999899999999999999999864 899999999999999999999986 799999999999999
Q ss_pred CccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCCCCCCCC-CCceEe-eEEEEecC
Q 009261 163 GDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDP-SFTKMF-GSRDVPYG 240 (539)
Q Consensus 163 G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~p~l~~~-~~~~~~-~~~~~~~~ 240 (539)
|+|+.+|+.+ +.+.++++|||+|++|+||||+++++ ++|.+|+++++ +|.... ...++++|
T Consensus 292 G~cv~iP~~~--------~~~~~l~sYPV~e~~GlVwV~lgd~~---------~aP~~p~ld~p~~~~~~~~~~~~~~~n 354 (536)
T PLN02281 292 GECKKMPSTK--------LLKVKIKSLPCLEQEGMIWIWPGDEP---------PAPILPSLQPPSGFLIHAELVMDLPVE 354 (536)
T ss_pred CCEeeCCCCc--------cccCCcceEeEEEECCEEEEEeCCCC---------CCCCCccccCcccceEEEEEEEEecCC
Confidence 9999999753 23578999999999999999998532 23667777765 565443 36889999
Q ss_pred hhhHhhhCCCCCCcccccccccccCCCceEEeccCCeeEEEEEeecCCCcccccCCcceeEEeccEEEEEeeeecccccC
Q 009261 241 YEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQEN 320 (539)
Q Consensus 241 ~~~~vEN~lD~~H~~~~H~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~~gf~~~~~~~~~~F~~P~~~~~~~~~~~~~~~ 320 (539)
|+.++||++|++|++|+|+++++.... . ..............++.... ...+.|.+||++.......+.+
T Consensus 355 wkllvENllD~~H~~fvH~~t~g~~~~-~------p~~v~~~~~~~~~~p~~~~~-pv~~~f~aP~~v~l~i~~~~~G-- 424 (536)
T PLN02281 355 HGLLLDNLLDLAHAPFTHTSTFAKGWS-V------PSLVKFLTPTSGLQGYWDPY-PIDMEFKPPCIVLSTIGISKPG-- 424 (536)
T ss_pred HHHHHHhccccccccccCcccccCccc-C------CceeEEecccCCCCcccccC-CceEEEECcEEEEEeeccccCC--
Confidence 999999999999999999999975321 0 00000111111222332221 2258899999998765543221
Q ss_pred CCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccch--hccchhHHHHHhhhhhhhhhHHHHHHHHHHhhh
Q 009261 321 GSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWI--DKVVPRWIFHIGQNLILDSDLCLLHVEERKIMA 398 (539)
Q Consensus 321 ~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~--~~~~prw~~h~~~~~VldqD~~iL~~qe~~l~~ 398 (539)
... .+ .....+.+...++++||+++++||+||.+.|||..++ ..+..+|+.+ +.+.+|+||+.+||.||+.+..
T Consensus 425 -~~~-~~-~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~-~~~~vF~ED~~iLEaQQ~~i~~ 500 (536)
T PLN02281 425 -KLE-GK-STQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRH-FAEQVLNEDLRLVLGQQERMLN 500 (536)
T ss_pred -ccc-cc-cccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHHH-HhhHhhHhHHHHHHHHHHHhhc
Confidence 000 00 0111234567889999999999999999999997662 2334454433 4678999999999999998865
Q ss_pred cCCccccccccccCCCchHHHHHHHHHHHHh--CCCCCC
Q 009261 399 VGPANWQKACFVPTKSDNLVVGFRMWLKKYS--GGQFNW 435 (539)
Q Consensus 399 ~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~--~g~p~w 435 (539)
. .+.+++++++|+++++||||++++- .++.+|
T Consensus 501 ~-----~~~~~l~l~aD~~~v~~RRWl~~~~~~~~~~pf 534 (536)
T PLN02281 501 G-----ANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPF 534 (536)
T ss_pred c-----cccccccchhhHHHHHHHHHHHHhhcccCCCCC
Confidence 3 2456899999999999999999985 334444
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=2.3e-48 Score=398.27 Aligned_cols=290 Identities=20% Similarity=0.361 Sum_probs=212.9
Q ss_pred ccccccccccCCeEEeeecCCC-CCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCC
Q 009261 78 NSQEEKFDWFSQWYPLMPVCDL-DKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHG 156 (539)
Q Consensus 78 ~~~e~~~~~~~~W~~v~~~~dl-~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHG 156 (539)
........-+++||+||.++|| ++++++.++++|++|||||+.+ |+++||+|+||||+++|++|++++ +.|+|||||
T Consensus 61 ~~~~~~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~d-Gqv~Af~N~CPHRGapLSeG~v~~-g~L~CPYHG 138 (394)
T PLN00095 61 DGAGATADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDAD-GEAGCIKDECAHRACPLSLGKLVD-GKAQCPYHG 138 (394)
T ss_pred ccCCCCCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCC-CCEEEEeccCCCCCCccccCcccC-CEEEecCCC
Confidence 3334455667899999999999 6799999999999999999875 899999999999999999999975 899999999
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCcchh--------------hhhcCCCCCCCC
Q 009261 157 WCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKD--------------IIKTKKPPHIPE 222 (539)
Q Consensus 157 W~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d--------------~~~~~~~p~~p~ 222 (539)
|+||.+|+|+.+|+.+.. .++.++++|||+|++|+||||+++.. ..| +++...|+.+++
T Consensus 139 W~FD~~G~C~~iP~~~~~------~~~~~v~tYPV~e~dGlVwVw~G~~~-p~dflg~~~~~e~~~~~~~~~~~P~~~~~ 211 (394)
T PLN00095 139 WEYETGGECAKMPSCKKF------LKGVFADAAPVIERDGFIFLWAGESD-PADFVGPEAACESIDDDVLAANEPGMFAP 211 (394)
T ss_pred cEECCCCCEeeCCCcccc------ccccccceEEEEEECCEEEEEeCCcc-hhhhccccccccccccchhhccCCcccCC
Confidence 999999999999976432 24578999999999999999998532 222 111234445665
Q ss_pred CCCCCCceEee-EEEEecChhhHhhhCCCCCCc-ccccccccccCCCceEEeccCCeeEEEEEeecCCCcccccC--Ccc
Q 009261 223 LDDPSFTKMFG-SRDVPYGYEVLMENLMDPAHL-TYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQ--DSE 298 (539)
Q Consensus 223 l~~~~~~~~~~-~~~~~~~~~~~vEN~lD~~H~-~~~H~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~~gf~~~~--~~~ 298 (539)
. .+|..+.. .+|++|+|.++|||+||++|+ ||+|+.++.-. ..+|..+.++.+.+.+....++.+.+ ...
T Consensus 212 ~--~gf~~~aev~~Dlp~d~~~L~ENllD~aH~a~~~~t~tf~~~----~~~r~~~~~~~~~~~~~~~~~l~g~~~~~p~ 285 (394)
T PLN00095 212 G--EGFTPMAEVIADIKLDADEVLERLLAIGERARREATVSFDVS----DAKRGRDALFPVDGTKIIAKVLRGGRDAVPQ 285 (394)
T ss_pred C--CCceEEEEEEEeccccHHHHHHhhcCccccCCccCceeeecc----cccccccCccchhhhhhhhhhheeecccCCc
Confidence 5 36776544 589999999999999999995 88887666211 13455555555544444444554432 345
Q ss_pred eeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCccc--chhccchhHHHHH
Q 009261 299 SAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQI--WIDKVVPRWIFHI 376 (539)
Q Consensus 299 ~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~--~~~~~~prw~~h~ 376 (539)
..+|.+||++......... |. +..+...++.++++|+|.+||+||+++++++||.. ++.+.+|.-+..-
T Consensus 286 ~~~F~ppc~~~s~i~l~~~----~g-----~~~~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~~~w~~ 356 (394)
T PLN00095 286 SATFKPACVIASTIALEDG----PG-----GGDGTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAGDVWAN 356 (394)
T ss_pred ceeEcCceeeeeeeccccc----CC-----CCccccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchHHHHHH
Confidence 6889999999865443110 10 11112457789999999999999999999999975 1222334322234
Q ss_pred hhhhhhhhhHHHHHH
Q 009261 377 GQNLILDSDLCLLHV 391 (539)
Q Consensus 377 ~~~~VldqD~~iL~~ 391 (539)
+.++||.||+.++.+
T Consensus 357 ~a~~vl~e~l~~v~~ 371 (394)
T PLN00095 357 LAMMVLKEELEDVRA 371 (394)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468899999877653
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.9e-41 Score=357.22 Aligned_cols=326 Identities=24% Similarity=0.378 Sum_probs=224.9
Q ss_pred CCCCcccccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEc
Q 009261 73 TEPETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 152 (539)
Q Consensus 73 ~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~C 152 (539)
..++.++.|.+.+|.++||+||+++||+++++++++++|+++||||+++ |+|+||.|.|||||++||+|++.+.+.|+|
T Consensus 11 ~~~~~~~~~~~~~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~d-g~~~al~d~C~HRga~Ls~g~~~~~~~l~C 89 (367)
T COG4638 11 TDPELFQLELERIFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKD-GQVHALADVCPHRGARLSEGRVGGKGRLTC 89 (367)
T ss_pred cCHHHHHHHHHHhhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCC-CCEEEEeccCCCCCchhccccCCCCceEec
Confidence 4677788888999999999999999999889999999999999999986 899999999999999999999987579999
Q ss_pred ccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCCC-CCCCCCCceE
Q 009261 153 PYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIP-ELDDPSFTKM 231 (539)
Q Consensus 153 pyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~p-~l~~~~~~~~ 231 (539)
|||||+||.+|+|+.||+.... .....++.++.+|||++++|+||||+++++.. .+...+|..+ +.++......
T Consensus 90 pyHgW~y~~~G~~~~ip~~~~~--~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~ 164 (367)
T COG4638 90 PYHGWTYDLDGRLRGVPARGYP--LDFDKSEHGLKRYPVEERYGFIWIWLGDPPPA---AEAFLPPAEPYEDDRSRLGGG 164 (367)
T ss_pred CCCceEECCCCcEecCCccccC--CCCCHhhCCccccceEEEccEEEEecCCCccC---hhHhcccccccccccccccCc
Confidence 9999999999999999954211 11223457889999999999999999976543 1234556666 4443322233
Q ss_pred eeEEEEecChhhHhhhCCC-CCCcccccccccccCCCc----eEEeccCCeeEEEEEeec--C-------CCcccccC--
Q 009261 232 FGSRDVPYGYEVLMENLMD-PAHLTYAHYGMMRTRKPK----VMLDREGGRPIKISFEKI--D-------INGFIAKQ-- 295 (539)
Q Consensus 232 ~~~~~~~~~~~~~vEN~lD-~~H~~~~H~~~~~~~~p~----~~~~r~~~~~~~~~~~~~--~-------~~gf~~~~-- 295 (539)
....++++||+.++||++| ++|++++|+++++..... ......+.....+..... . ..++.+..
T Consensus 165 ~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~ 244 (367)
T COG4638 165 SFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFFQPLGSEASSYGFDGNYEV 244 (367)
T ss_pred eEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCccCCcchhhhcccccccccc
Confidence 4567899999999998888 999999999998754310 111111001111111110 0 01121111
Q ss_pred --CcceeEEeccEE-EEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEe--ccCcccchhccch
Q 009261 296 --DSESAKFLAPCV-FVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAF--PRNFQIWIDKVVP 370 (539)
Q Consensus 296 --~~~~~~F~~P~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~--~r~f~~~~~~~~p 370 (539)
......|+.|+. ..+. .......+....|+++++|.+.... ..+..... +...
T Consensus 245 ~~~~~~~~~~~p~~~~~~~---------------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~ 302 (367)
T COG4638 245 HVPGAYLLFLYPNSTVWNH---------------------VTVDDVIVFFVQPIDEDETMVTLVWLVLPDLVEGV-DYFD 302 (367)
T ss_pred ccCceeEEEEcCCchheee---------------------ecccceeEEEEEecCCceeEEEeeeeeccchhhHH-HHHH
Confidence 123445555542 2211 1223466788999999999997652 22211111 1122
Q ss_pred hHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHhCC
Q 009261 371 RWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGG 431 (539)
Q Consensus 371 rw~~h~~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~~g 431 (539)
.++. .+.+.+++||..|+|.|++.+.+.... ....+...|...+++|+|+.+....
T Consensus 303 ~~~~-~~~~~~~~qD~~i~e~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (367)
T COG4638 303 KLIR-RFRQEILDQDREILENQQPGRLSPALE----RGPYPIREDAGSVQFRRWLAERLVL 358 (367)
T ss_pred HHHH-HHhccCcHHHHHHHHHHhccccccccc----CCCccccccchhhHHHHHHHHHHhh
Confidence 2332 234569999999999999865543321 1234778999999999999887753
No 5
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=7.8e-33 Score=294.74 Aligned_cols=189 Identities=17% Similarity=0.239 Sum_probs=145.0
Q ss_pred CCCCcccccccccccCCeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEE
Q 009261 73 TEPETNSQEEKFDWFSQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 151 (539)
Q Consensus 73 ~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~ 151 (539)
+.++.++.|.+.+|.+.|+.||+++||++ |+...++++|++|+|+|+++ |+++||.|+|||||++|+.|..++.+.|+
T Consensus 22 td~~~f~~E~~~IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~d-G~i~af~N~C~HRga~L~~~~~g~~~~~~ 100 (433)
T TIGR03229 22 TDPELFDLEMKHIFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKD-GELNAFINACSHRGAMLCRHKRGNKTTYT 100 (433)
T ss_pred CCHHHHHHHHHHHhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCC-CcEEEEeCcCCCCCCCcccccccCCCEEE
Confidence 47899999999999999999999999985 67788999999999999875 89999999999999999998776556899
Q ss_pred cccCCeEEcCCCccccCCCCCCCC-CCCCCc-ccccceeee-EEEeCCeEEEcCCCCCc-chhhhhcCCCCCCCCCC---
Q 009261 152 CPYHGWCFSGSGDCKFIPQAPPDG-PPVHTS-KKACAAVYP-SAVQNGILWFWPDIAPQ-CKDIIKTKKPPHIPELD--- 224 (539)
Q Consensus 152 CpyHGW~F~~~G~c~~iP~~~~~~-~~~~~~-~~~~l~~yp-v~~~~g~vwV~~~~~~~-~~d~~~~~~~p~~p~l~--- 224 (539)
||||||+||.||+|+.+|.....+ +...+. ...+|..++ +..++|+|||++++++. +.+.+... ...+..+.
T Consensus 101 CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~~~l~e~Lg~~-~~~ld~~~~~~ 179 (433)
T TIGR03229 101 CPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDVLPLEEHLGET-AKIIDMIVDQS 179 (433)
T ss_pred cCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCCCCHHHHhhhH-HHHHHHHhhcC
Confidence 999999999999999999743221 122222 246799996 66679999999986532 22221110 00111111
Q ss_pred CCCCceE--eeEEEEecChhhHhhhCCCCCCcccccccccc
Q 009261 225 DPSFTKM--FGSRDVPYGYEVLMENLMDPAHLTYAHYGMMR 263 (539)
Q Consensus 225 ~~~~~~~--~~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~ 263 (539)
..++... ...++++||||+++||++|.||++++|..++.
T Consensus 180 ~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 180 PDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred cCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 1223333 23578999999999999999999999988864
No 6
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=99.97 E-value=1.8e-32 Score=291.81 Aligned_cols=187 Identities=18% Similarity=0.283 Sum_probs=147.1
Q ss_pred CCCCcccccccccccCCeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCc-ccccCCCeE
Q 009261 73 TEPETNSQEEKFDWFSQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSE-GRIDQWGRL 150 (539)
Q Consensus 73 ~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~-G~v~~~g~l 150 (539)
++++.++.|.+.+|.+.|+.||+.++|++ |+++++++++++|+|+|+++ |+++||.|+|||||++|+. |... ...|
T Consensus 22 td~~if~~E~~~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~d-G~i~a~~N~C~HRGa~L~~~~~Gn-~~~~ 99 (438)
T TIGR03228 22 TEPELFDLEMELIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGK-GELHALVNACQHRGATLTRVGKGN-QSTF 99 (438)
T ss_pred CCHHHHHHHHHHHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCC-CCEEEEcccCCCCCCccccCCccc-cCEE
Confidence 47899999999999999999999999985 89999999999999999985 9999999999999999997 5544 3689
Q ss_pred EcccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCC--cchhhhhcCCCCCCCCC----C
Q 009261 151 QCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAP--QCKDIIKTKKPPHIPEL----D 224 (539)
Q Consensus 151 ~CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~--~~~d~~~~~~~p~~p~l----~ 224 (539)
+||||||+|+.||+|+.||..... ++..+.....|+.++|.+.+|+||+++++++ .+.+.+.... ..+..+ .
T Consensus 100 ~CPYHgW~y~~dG~L~~vp~~~~y-~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~~~l~e~lg~~~-~~ld~~~~~~~ 177 (438)
T TIGR03228 100 TCPFHAWCYKSDGRLVKVKAPGEY-CEGFDKATRGLKKARIASYRGFVFVSLDVAATDSLEDFLGDAR-VFLDMMVAQSP 177 (438)
T ss_pred EcCCCCCcccCCCceeecCccccc-CCCCChhhCCCcceeEEEECCEEEEEeCCCCCCCHHHHhhhHH-HHHHHHhhccC
Confidence 999999999999999999964322 2224455677888999999999999998752 3333221110 111111 1
Q ss_pred CCCCceE--eeEEEEecChhhHhhhCCCCCCcccccccccc
Q 009261 225 DPSFTKM--FGSRDVPYGYEVLMENLMDPAHLTYAHYGMMR 263 (539)
Q Consensus 225 ~~~~~~~--~~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~ 263 (539)
..++... ...++++||||+.+||++|.||++++|..++.
T Consensus 178 ~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 178 TGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred cCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 1123332 23468999999999999999999999988764
No 7
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.97 E-value=2.6e-31 Score=242.33 Aligned_cols=132 Identities=55% Similarity=1.145 Sum_probs=114.8
Q ss_pred CCCcccccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcc
Q 009261 74 EPETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCP 153 (539)
Q Consensus 74 ~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~Cp 153 (539)
+|+..++..++.|++.|++|+.++||++|+++.++++|++|+|+|++.+|+++||+|+|||||++|+.|.+.+++.|+||
T Consensus 2 ~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP 81 (138)
T cd03480 2 EPAGGSDSDKFDWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECP 81 (138)
T ss_pred CCCCCcccccCCCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeC
Confidence 45666777899999999999999999999999999999999999985348999999999999999999988655799999
Q ss_pred cCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCC
Q 009261 154 YHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAP 206 (539)
Q Consensus 154 yHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~ 206 (539)
||||+||.+|+|+.+|.....+. ...+.+.++++|||++++|+|||++++.+
T Consensus 82 ~Hgw~Fd~tG~~~~~P~~~~~g~-~~~~~~~~l~~ypv~v~~g~V~V~~~~~~ 133 (138)
T cd03480 82 YHGWSFDGSGSCQRIPQAAEGGK-AHTSPRACVASLPTAVRQGLLFVWPGEPE 133 (138)
T ss_pred CCCCEECCCCCEEECCCCccccc-cCCCcccccceEeEEEECCEEEEecCChH
Confidence 99999999999999998654331 12345678999999999999999998543
No 8
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.97 E-value=3.2e-31 Score=240.66 Aligned_cols=127 Identities=40% Similarity=0.843 Sum_probs=111.0
Q ss_pred CCCcccccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcc
Q 009261 74 EPETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCP 153 (539)
Q Consensus 74 ~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~Cp 153 (539)
+++..+.-.+++|++.|++|+.++||++++++.++++|++|+|||+.+ |+++||+|+|||||++|++|.+++ +.|+||
T Consensus 2 ~~~~~~~~~~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~-G~v~A~~n~CpHrga~L~~G~~~~-~~i~CP 79 (134)
T cd04338 2 EFETPENVAEYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQN-GQLRCLEDRCPHRLAKLSEGQLID-GKLECL 79 (134)
T ss_pred CcccCCcccccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCC-CCEEEEcCcCCCCcCcccCCeecC-CEEEcc
Confidence 445555567899999999999999999999999999999999999864 899999999999999999999975 799999
Q ss_pred cCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 154 YHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 154 yHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
||||+||.+|+|+.+|..+... ..+.+.+|++|||++++|+|||++++.
T Consensus 80 ~Hgw~Fd~~G~~~~~P~~~~~~---~~~~~~~l~~y~v~~~~G~V~V~~~~~ 128 (134)
T cd04338 80 YHGWQFGGEGKCVKIPQLPADA---KIPKNACVKSYEVRDSQGVVWMWMSEA 128 (134)
T ss_pred CCCCEECCCCCEEECCCCCccC---CCCcccCcceEeEEEECCEEEEEcCCC
Confidence 9999999999999999765321 123456799999999999999999854
No 9
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.97 E-value=2.1e-30 Score=231.30 Aligned_cols=114 Identities=27% Similarity=0.584 Sum_probs=99.9
Q ss_pred CCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCcccc
Q 009261 88 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKF 167 (539)
Q Consensus 88 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~ 167 (539)
+.||+|+.++||+ +++..++++|+++||||+.+ |+++|++|+||||+++|++|++++ +.|+||||||+||.+|+|+.
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~-g~v~a~~n~CpHrg~~Ls~G~v~~-~~l~CpyHGw~Fd~~G~~~~ 78 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGAT-GRAVVMDRHCSHLGANLADGRVKD-GCIQCPFHHWRYDEQGQCVH 78 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccC-CEEEEEcCCCCCCCCCccCCEEeC-CEEECCCCCCEECCCCCEEE
Confidence 4799999999995 68899999999999999764 899999999999999999999986 79999999999999999999
Q ss_pred CCCCCCCCCC-CCCcccccceeeeEEEeCCeEEEcCCC
Q 009261 168 IPQAPPDGPP-VHTSKKACAAVYPSAVQNGILWFWPDI 204 (539)
Q Consensus 168 iP~~~~~~~~-~~~~~~~~l~~ypv~~~~g~vwV~~~~ 204 (539)
||+.+...+. ...+++.++++|||+|++|+||||+++
T Consensus 79 iP~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~ 116 (123)
T cd03537 79 IPGHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGS 116 (123)
T ss_pred CCCCcccccccccCCcccccccEeEEEECCEEEEEcCC
Confidence 9986542111 113456889999999999999999985
No 10
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.96 E-value=1.2e-28 Score=222.23 Aligned_cols=116 Identities=32% Similarity=0.682 Sum_probs=103.9
Q ss_pred ccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEE
Q 009261 80 QEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCF 159 (539)
Q Consensus 80 ~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F 159 (539)
.+.+..|++.||+|+.++||++|+++.++++|++++|+|+.+ |+++|++|+|||||++|+.|.+++ +.|+||||||+|
T Consensus 8 ~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~-g~v~A~~n~CpH~g~~L~~G~~~~-~~i~CP~Hgw~F 85 (129)
T cd04337 8 LELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDED-GTPGCIRDECAHRACPLSLGKVIE-GRIQCPYHGWEY 85 (129)
T ss_pred ccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCC-CcEEEEeCcCCCCcCCcccCcEeC-CEEEeCCCCCEE
Confidence 345667899999999999999999999999999999999864 899999999999999999999875 799999999999
Q ss_pred cCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 160 SGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 160 ~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
|.+|+|+.+|..+ +...++++|||++++|+||||++++
T Consensus 86 d~tG~~~~~P~~~--------~~~~~l~~y~v~v~~g~V~V~~~~~ 123 (129)
T cd04337 86 DGDGECTKMPSTK--------CLNVGIAALPCMEQDGMIWVWPGDD 123 (129)
T ss_pred CCCCCEEeCCcCC--------CccCCcceEeEEEECCEEEEEcCCC
Confidence 9999999998643 1235799999999999999999853
No 11
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.95 E-value=2.4e-28 Score=216.13 Aligned_cols=110 Identities=30% Similarity=0.606 Sum_probs=99.5
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccC
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFI 168 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~i 168 (539)
.||+|+.++||++|+++.++++|++|+|||+.+ |+++|++|+|||||++|++|.+++ +.|+||||||+||.+|+|+.+
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~-g~~~a~~n~CpH~ga~L~~G~~~~-~~i~CP~Hg~~fd~~G~~~~~ 78 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSD-GALNVLDAYCRHMGGDLSQGTVKG-DEIACPFHDWRWGGDGRCKAI 78 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCC-CCEEEEcCcCCCCCCCCccCcccC-CEEECCCCCCEECCCCCEEEC
Confidence 499999999999999999999999999999864 899999999999999999999986 799999999999999999999
Q ss_pred CCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCC
Q 009261 169 PQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAP 206 (539)
Q Consensus 169 P~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~ 206 (539)
|.... .+...++++|||+|++|+||||++++.
T Consensus 79 p~~~~------~p~~~~l~~ypv~~~~g~v~v~~~~~~ 110 (115)
T cd03531 79 PYARR------VPPLARTRAWPTLERNGQLFVWHDPEG 110 (115)
T ss_pred CcccC------CCcccccceEeEEEECCEEEEECCCCC
Confidence 97542 134577999999999999999998653
No 12
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.95 E-value=4.8e-28 Score=222.57 Aligned_cols=118 Identities=30% Similarity=0.615 Sum_probs=104.6
Q ss_pred ccccccCCeEEeeecCCCC-CCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc
Q 009261 82 EKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS 160 (539)
Q Consensus 82 ~~~~~~~~W~~v~~~~dl~-~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~ 160 (539)
...+|++.|++|+.++||+ +|+++.++++|++++|+|+.+ |+++|++|+|||||++|+.|.+.+ +.|+||||||+||
T Consensus 14 ~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~-G~v~A~~n~CpHrG~~L~~G~~~~-~~i~CP~Hgw~F~ 91 (144)
T cd03479 14 MGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTS-GRVGLLDEHCPHRGASLVFGRVEE-CGLRCCYHGWKFD 91 (144)
T ss_pred hhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCC-CCEEEEcCcCCCCCCcccCCcccC-CEEEccCCCcEEC
Confidence 4567999999999999999 599999999999999999865 899999999999999999999875 7999999999999
Q ss_pred CCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCC
Q 009261 161 GSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDI 204 (539)
Q Consensus 161 ~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~ 204 (539)
.+|+|+.+|..+... ....+.++++|+|++++|+|||++++
T Consensus 92 ~~G~~~~~P~~~~~~---~~~~~~~l~~~~v~~~~G~I~V~~~~ 132 (144)
T cd03479 92 VDGQCLEMPSEPPDS---QLKQKVRQPAYPVRERGGLVWAYMGP 132 (144)
T ss_pred CCCCEEECCCCcccc---CCccccCcceEeEEEECCEEEEECCC
Confidence 999999999765321 12356789999999999999999974
No 13
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=6.7e-28 Score=213.64 Aligned_cols=111 Identities=33% Similarity=0.698 Sum_probs=100.3
Q ss_pred ccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCcc
Q 009261 86 WFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDC 165 (539)
Q Consensus 86 ~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c 165 (539)
+++.|++||.++||+ +++..++++|++++|+|+.+ |+++|++|+|||||++|+.|.+.+ +.|+||||||+||.+|+|
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~-g~~~a~~n~CpH~g~~L~~G~~~~-~~i~Cp~Hg~~fd~~G~~ 78 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQD-GRVAALEDRCPHRSAPLSKGSVEG-GGLVCGYHGLEFDSDGRC 78 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCC-CCEEEeCCcCCCCCCCccCCcccC-CEEEeCCCCcEEcCCCCE
Confidence 578999999999998 89999999999999999764 899999999999999999999975 799999999999999999
Q ss_pred ccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 166 KFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 166 ~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
+.+|..+. .+...++++|||++++|+||||++++
T Consensus 79 ~~~p~~~~------~~~~~~l~~~~v~~~~g~v~v~~~~~ 112 (116)
T cd03532 79 VHMPGQER------VPAKACVRSYPVVERDALIWIWMGDA 112 (116)
T ss_pred EeCCCCCC------CCCccccccCCEEEECCEEEEEcCCc
Confidence 99997542 23457899999999999999999854
No 14
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.95 E-value=1.3e-27 Score=217.52 Aligned_cols=117 Identities=23% Similarity=0.482 Sum_probs=101.1
Q ss_pred ccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccc-cCCCeEEcccCCeEEc
Q 009261 82 EKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRI-DQWGRLQCPYHGWCFS 160 (539)
Q Consensus 82 ~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v-~~~g~l~CpyHGW~F~ 160 (539)
.++.|++.|++|+.++||++|+++.++++|++|+|+|. +|+++|++|+|||||++|+.|.. ..++.|+||||||+||
T Consensus 7 ~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r~--~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fd 84 (136)
T cd03548 7 AKWGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRRV--DGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYR 84 (136)
T ss_pred cccCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEec--CCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEe
Confidence 45689999999999999999999999999999999984 48999999999999999999863 2247999999999999
Q ss_pred -CCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCC
Q 009261 161 -GSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDI 204 (539)
Q Consensus 161 -~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~ 204 (539)
.+|+|+.+|..+.. ......+|++|||++++|+|||++++
T Consensus 85 l~tG~~~~~~~~p~~----~~~~~~~L~~ypv~~~~g~V~v~~~~ 125 (136)
T cd03548 85 LDDGKLVTILANPDD----PLIGRTGLKTYPVEEAKGMIFVFVGD 125 (136)
T ss_pred CCCccEEEcccCCCc----cccccCCCceEeEEEECCEEEEEeCC
Confidence 59999999865432 12335679999999999999999975
No 15
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.95 E-value=9.4e-28 Score=221.82 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=113.8
Q ss_pred CCCCccccccccccc-CCeEEeeecCCCC-CCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeE
Q 009261 73 TEPETNSQEEKFDWF-SQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRL 150 (539)
Q Consensus 73 ~~~~~~~~e~~~~~~-~~W~~v~~~~dl~-~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l 150 (539)
+.++.++.|.+.+|+ +.|++|+.++||+ +|+...+++.|++|+|+|+.+ |+++|++|+|||||++|+.|....++.|
T Consensus 8 ~d~~~~~~E~~~if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~-g~v~A~~n~CpHrg~~L~~g~~g~~~~i 86 (150)
T cd03545 8 TDRAYFDREQERIFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAED-GSLHAWVNRCAHRGALVCRERRGNDGSL 86 (150)
T ss_pred cCHHHHHHHHHhhhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCC-CCEEEEcccCcCCCCEecccccCCCCEE
Confidence 457788999999998 9999999999998 488899999999999999764 8999999999999999999865445789
Q ss_pred EcccCCeEEcCCCccccCCCCCCCCC-----CCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 151 QCPYHGWCFSGSGDCKFIPQAPPDGP-----PVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 151 ~CpyHGW~F~~~G~c~~iP~~~~~~~-----~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
+||||||+||.+|+|+.||......+ ....+.+.+|++|+|.+++|+|||+++++
T Consensus 87 ~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~ 146 (150)
T cd03545 87 TCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDE 146 (150)
T ss_pred ECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCC
Confidence 99999999999999999997654211 11345567899999999999999999864
No 16
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.94 E-value=3.7e-27 Score=212.26 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=102.8
Q ss_pred cccccCCeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcC
Q 009261 83 KFDWFSQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSG 161 (539)
Q Consensus 83 ~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~ 161 (539)
+.+|.+.|++|+.++||++ |....++++|++|+|+|+.+ |+++|++|+|||||++|++|..++.+.|+||||||+||.
T Consensus 2 ~~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~-g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~ 80 (128)
T cd03472 2 ERVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKD-GSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDT 80 (128)
T ss_pred cchhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCC-CCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECC
Confidence 3568999999999999986 55567789999999999764 899999999999999999998754458999999999999
Q ss_pred CCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 162 SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 162 ~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
+|+|+.+|+.++..++........+..++|.+++|+|||+++++
T Consensus 81 ~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~ 124 (128)
T cd03472 81 AGNLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAE 124 (128)
T ss_pred CcCEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCC
Confidence 99999999865432222344556789999999999999999865
No 17
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.94 E-value=7.5e-27 Score=210.52 Aligned_cols=116 Identities=19% Similarity=0.272 Sum_probs=99.2
Q ss_pred eEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccC
Q 009261 90 WYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFI 168 (539)
Q Consensus 90 W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~i 168 (539)
|++||+++||++ |....+.+.+++|+|+|+.+ |+++||.|+|||||++|++|.+++.+.|+||||||+||.+|+|+.+
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~d-g~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~ 79 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPD-GGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGV 79 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCC-CCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeec
Confidence 999999999985 78888889999999999864 8999999999999999999887544689999999999999999999
Q ss_pred CCCCCCC---------CCCCCcccccceeeeEEEeCCeEEEcCCCCC
Q 009261 169 PQAPPDG---------PPVHTSKKACAAVYPSAVQNGILWFWPDIAP 206 (539)
Q Consensus 169 P~~~~~~---------~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~ 206 (539)
|+..... ++..++.+.+|..++|++++|+|||++++++
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~ 126 (129)
T cd03539 80 PFRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDV 126 (129)
T ss_pred cccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCC
Confidence 9864321 1123456688999999999999999998653
No 18
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.93 E-value=4.4e-26 Score=202.19 Aligned_cols=113 Identities=20% Similarity=0.288 Sum_probs=100.4
Q ss_pred CeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCcccc
Q 009261 89 QWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKF 167 (539)
Q Consensus 89 ~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~ 167 (539)
.|++|++++||++ |++++++++|++|+|+|+.+ |+++||+|+|||||++|++|.+++ +.|+||||||+||.+|+|+.
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~d-g~v~A~~n~C~Hrg~~L~~g~~~~-~~i~CP~Hgw~f~l~G~l~~ 78 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGN-GKLHAFHNVCTHRASILACGSGKK-SCFVCPYHGWVYGLDGSLTK 78 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCC-CCEEEEeCCCCCCcCCccCCcccc-CEEEeCCCCCEEcCCCeEEe
Confidence 4999999999986 66779999999999999864 899999999999999999999875 69999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 168 IPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 168 iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
+|..... +..+.....|..++|.+++|+|||+++++
T Consensus 79 ~P~~~~~--~~~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 79 ATQATGI--QNFNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CCCcccc--cCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 9987543 22456678899999999999999999854
No 19
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.93 E-value=6.2e-26 Score=203.10 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=97.7
Q ss_pred CCeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccc
Q 009261 88 SQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCK 166 (539)
Q Consensus 88 ~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~ 166 (539)
+.|++||.++||++ |....++++|++++|+|+.+ |+++|++|+|||||++|++|.+++.+.|+||||||+||.||+|+
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~-g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~ 79 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDED-GEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLV 79 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCC-CCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEe
Confidence 46999999999987 56666678999999999764 89999999999999999999886546899999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccceeeeE-EEeCCeEEEcCCCC
Q 009261 167 FIPQAPPDGPPVHTSKKACAAVYPS-AVQNGILWFWPDIA 205 (539)
Q Consensus 167 ~iP~~~~~~~~~~~~~~~~l~~ypv-~~~~g~vwV~~~~~ 205 (539)
.+|......+......+.+|++|++ ++++|+|||+++++
T Consensus 80 ~~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~ 119 (123)
T cd03535 80 GVPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPK 119 (123)
T ss_pred eCCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCC
Confidence 9997654322223445678999985 55899999999864
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.93 E-value=7.6e-26 Score=200.60 Aligned_cols=113 Identities=30% Similarity=0.471 Sum_probs=98.9
Q ss_pred eEEeeecCCCC-CCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccC
Q 009261 90 WYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFI 168 (539)
Q Consensus 90 W~~v~~~~dl~-~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~i 168 (539)
||+||.++||+ +|+.+.+++.|++++|+|+.+ |+++|++|+|||+|++|+.|.+.+++.|+||||||+||.+|+|+.+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~-g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~ 79 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRD-GEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGV 79 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCC-CCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeC
Confidence 99999999999 899999999999999999754 8999999999999999999998224799999999999988999999
Q ss_pred CCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 169 PQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 169 P~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
|...... ....++.+|++|||++++|.|||+++++
T Consensus 80 P~~~~~~--~~~~~~~~L~~~~v~~~~g~v~v~~~~~ 114 (118)
T cd03469 80 PREEGFP--GFDKEKLGLRTVPVEEWGGLIFVNLDPD 114 (118)
T ss_pred CcccccC--CCCHHHCCCeEEEEEEECCEEEEEcCCC
Confidence 9754321 1234567899999999999999999854
No 21
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.93 E-value=5.9e-26 Score=208.97 Aligned_cols=131 Identities=15% Similarity=0.216 Sum_probs=109.3
Q ss_pred CCCcccccccccccCCeEEeeecCCCC-CCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCccc-ccCCCeEE
Q 009261 74 EPETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGR-IDQWGRLQ 151 (539)
Q Consensus 74 ~~~~~~~e~~~~~~~~W~~v~~~~dl~-~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~-v~~~g~l~ 151 (539)
.++.++.|.+.+|.+.|++|+.++||+ +|+...++++|++|+|+|+.+ |+++|++|+|||||++|+.+. ...++.|+
T Consensus 7 ~~~~~~~e~~~i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~-g~v~A~~n~CpHrg~~L~~~~~g~~~~~i~ 85 (146)
T cd03538 7 DPEIFALEMERLFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTD-GSVHVLYNRCPHKGTKIVSDGCGNTGKFFR 85 (146)
T ss_pred CHHHHHHHHHHHhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCC-CCEEEEeccCcCCCCEeecccccccCCEEE
Confidence 456778899999999999999999998 588999999999999999864 899999999999999997544 32235799
Q ss_pred cccCCeEEcCCCccccCCCCCCCCCCCCC--cccccceee-eEEEeCCeEEEcCCCC
Q 009261 152 CPYHGWCFSGSGDCKFIPQAPPDGPPVHT--SKKACAAVY-PSAVQNGILWFWPDIA 205 (539)
Q Consensus 152 CpyHGW~F~~~G~c~~iP~~~~~~~~~~~--~~~~~l~~y-pv~~~~g~vwV~~~~~ 205 (539)
||||||+||.||+|+.+|........... ....+|..+ .|++++|+|||+++++
T Consensus 86 CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~ 142 (146)
T cd03538 86 CPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPS 142 (146)
T ss_pred CCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCC
Confidence 99999999999999999976543211111 235789999 7999999999999864
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.92 E-value=4.1e-25 Score=197.81 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=97.0
Q ss_pred eEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccC
Q 009261 90 WYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFI 168 (539)
Q Consensus 90 W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~i 168 (539)
|+.||.++||++ |....+++.|++++|+|+.+ |+++|++|+||||+++|+.|..++...|+||||||+||.+|+|+.+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~-g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~ 79 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKD-GEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGA 79 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCC-CCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEEC
Confidence 999999999997 55666689999999999764 8999999999999999999877644579999999999999999999
Q ss_pred CCCCCCC-CCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 169 PQAPPDG-PPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 169 P~~~~~~-~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
|..+... .....+...+|++|+|++++|+|||+++++
T Consensus 80 p~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~ 117 (123)
T cd03536 80 PVEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNID 117 (123)
T ss_pred CccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCC
Confidence 9864321 111344567899999999999999999864
No 23
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.91 E-value=4.7e-24 Score=182.99 Aligned_cols=96 Identities=29% Similarity=0.531 Sum_probs=88.1
Q ss_pred eEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcC-CCccccC
Q 009261 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSG-SGDCKFI 168 (539)
Q Consensus 90 W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~-~G~c~~i 168 (539)
|++|+.++||++|++..+++.|++++|+|++ |+++|++|+|||+|++|+.|.+++ +.|+||||||+||. +|+|+..
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~~--~~~~a~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~fd~~~G~~~~~ 77 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRVD--GEFYATDDLCTHGDASLSEGYVEG-GVIECPLHGGRFDLRTGKALSL 77 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEEC--CEEEEECCcCCCCCCCCCCCeEeC-CEEEeCCcCCEEECCCCcccCC
Confidence 9999999999999999999999999999984 699999999999999999998865 79999999999995 9999987
Q ss_pred CCCCCCCCCCCCcccccceeeeEEEeCCeEEE
Q 009261 169 PQAPPDGPPVHTSKKACAAVYPSAVQNGILWF 200 (539)
Q Consensus 169 P~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV 200 (539)
|.. ..|++||+++++|.|||
T Consensus 78 p~~------------~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 78 PAT------------EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred CCC------------CCcceEeEEEECCEEEE
Confidence 742 34899999999999998
No 24
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.91 E-value=7.5e-24 Score=181.93 Aligned_cols=97 Identities=25% Similarity=0.607 Sum_probs=87.0
Q ss_pred eEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc-CCCccccC
Q 009261 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCKFI 168 (539)
Q Consensus 90 W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c~~i 168 (539)
|++|+.++||++++.+.+++.|++++|+|+.+ |+++||+|+|||+|++|+.|.+++ +.|+||||||+|| .+|.|..
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~~G~~~~- 77 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTAD-DEVFALENRCPHKGGPLSEGIVHG-EYVTCPLHNWVIDLETGEAQG- 77 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCC-CCEEEEcCcCCCCCCCccCCEEcC-CEEECCCCCCEEECCCCCCCC-
Confidence 99999999999999999999999999999864 899999999999999999999975 7999999999999 5888753
Q ss_pred CCCCCCCCCCCCcccccceeeeEEEeCCeEEEc
Q 009261 169 PQAPPDGPPVHTSKKACAAVYPSAVQNGILWFW 201 (539)
Q Consensus 169 P~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~ 201 (539)
|. ..+|++|||++++|.|||.
T Consensus 78 p~------------~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 78 PD------------EGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred CC------------CCccceEeEEEECCEEEEC
Confidence 21 2358999999999999984
No 25
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.90 E-value=1e-23 Score=182.91 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=87.5
Q ss_pred eEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCC-CCccccc---CCCeEEcccCCeEEc-CCCc
Q 009261 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAP-LSEGRID---QWGRLQCPYHGWCFS-GSGD 164 (539)
Q Consensus 90 W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgap-Ls~G~v~---~~g~l~CpyHGW~F~-~~G~ 164 (539)
|++||.++||++|+.+.+++.|++|+|+|.++ |+++|++|+|||++++ |++|.+. +++.|+||||||+|| .+|+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~-g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 79 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPG-REVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGR 79 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCC-CeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCC
Confidence 99999999999999999999999999999863 6999999999999997 8889875 224899999999999 8999
Q ss_pred cccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEc
Q 009261 165 CKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFW 201 (539)
Q Consensus 165 c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~ 201 (539)
|+..|. .+|++|||++++|.|||.
T Consensus 80 ~~~~p~-------------~~l~~y~v~~~~g~v~v~ 103 (103)
T cd03529 80 CLEDED-------------VSVATFPVRVEDGEVYVK 103 (103)
T ss_pred ccCCCC-------------ccEeeEeEEEECCEEEEC
Confidence 998662 248999999999999983
No 26
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.90 E-value=3.3e-23 Score=181.17 Aligned_cols=101 Identities=28% Similarity=0.459 Sum_probs=88.5
Q ss_pred eEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc-CCCccccC
Q 009261 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCKFI 168 (539)
Q Consensus 90 W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c~~i 168 (539)
|++|+.++||++|+++.+++.|++++|+|+.+ |+++|++|+|||+|++|+.|.+++ +.|+||||||+|| .+|.|..
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~-g~~~A~~n~CpH~g~~L~~g~~~g-~~i~CP~Hg~~Fdl~~G~~~~- 77 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEG-GEFRAFQGICPHQEIPLAEGGFDG-GVLTCRAHLWQFDADTGEGLN- 77 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccC-CeEEEEcCcCCCCCCCcccCcccC-CEEEeCCcCCEEECCCccccC-
Confidence 89999999999999999999998888888764 899999999999999999999865 6999999999999 5676653
Q ss_pred CCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 169 PQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 169 P~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
| ...+|++|||++++|.|||+++.+
T Consensus 78 ~------------~~~~L~~~~v~v~~g~v~v~~~~~ 102 (108)
T cd03474 78 P------------RDCRLARYPVKVEGGDILVDTEGV 102 (108)
T ss_pred C------------CCCccceEeEEEECCEEEEeCCCc
Confidence 2 124599999999999999998753
No 27
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.90 E-value=3.1e-23 Score=179.27 Aligned_cols=99 Identities=19% Similarity=0.409 Sum_probs=90.0
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc-CCCcccc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCKF 167 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c~~ 167 (539)
.|+++|..+||++|+...+++.|++++|+|.. +|+++|++|+|||++++|+.|.+++ +.|+||+|||+|| .||+|+.
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~-~g~~~A~~~~CpH~g~~L~~G~~~~-~~i~CP~Hg~~Fdl~tG~~~~ 78 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTP-DDQYYATDGLCTHEYAHLADGLVMD-TTVECPKHAGCFDYRTGEALN 78 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeC-CCEEEEEcCcCCCCCCCCCCCEEcC-CEEECCccCCEEECCCCcccC
Confidence 39999999999999999999999999999975 4899999999999999999999975 7999999999999 6999998
Q ss_pred CCCCCCCCCCCCCcccccceeeeEEEeCCeEEEc
Q 009261 168 IPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFW 201 (539)
Q Consensus 168 iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~ 201 (539)
.|.. ..|++|||++++|.|||.
T Consensus 79 ~p~~------------~~l~~y~v~v~~g~v~V~ 100 (101)
T TIGR02377 79 PPVC------------VNLKTYPVKVVDGAVYVD 100 (101)
T ss_pred CCcc------------CCcceEeEEEECCEEEEe
Confidence 7742 248999999999999985
No 28
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.90 E-value=2.3e-23 Score=186.26 Aligned_cols=115 Identities=22% Similarity=0.351 Sum_probs=94.7
Q ss_pred eEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccC
Q 009261 90 WYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFI 168 (539)
Q Consensus 90 W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~i 168 (539)
|+.||+++||++ |+...+.+.|++++|+|+.+ |+++|++|.|||||++|+.|..++.+.|+||||||+||.||+|+.+
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~-g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~ 79 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKD-GELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKV 79 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCC-CCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEEC
Confidence 899999999997 66777889999999999764 8999999999999999999877544689999999999999999999
Q ss_pred CCCCCC-CCCCCCcc-cccceeee-EEEeCCeEEEcCCCC
Q 009261 169 PQAPPD-GPPVHTSK-KACAAVYP-SAVQNGILWFWPDIA 205 (539)
Q Consensus 169 P~~~~~-~~~~~~~~-~~~l~~yp-v~~~~g~vwV~~~~~ 205 (539)
|..+.. -+...+.. +.+|..++ +.++.|+|||.++++
T Consensus 80 p~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~ 119 (123)
T cd03542 80 KDPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNAD 119 (123)
T ss_pred CcccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCC
Confidence 964321 11122333 46788886 566799999999864
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.89 E-value=4.8e-23 Score=179.25 Aligned_cols=100 Identities=17% Similarity=0.343 Sum_probs=88.2
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCC-CCCCCcccccCCC---eEEcccCCeEEc-CCC
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHR-LAPLSEGRIDQWG---RLQCPYHGWCFS-GSG 163 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHr-gapLs~G~v~~~g---~l~CpyHGW~F~-~~G 163 (539)
.|++|+.++||+++..+.+++.|++++|+|+.+ |+++|++|+|||+ +.+|++|.+.++. .|+||||||+|| .+|
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~-~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG 79 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPG-DQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDG 79 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCC-CcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCc
Confidence 499999999999999999999999999999864 7999999999999 9999999887531 399999999999 699
Q ss_pred ccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcC
Q 009261 164 DCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWP 202 (539)
Q Consensus 164 ~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~ 202 (539)
+|+..| ..+|++|||++++|.|||.+
T Consensus 80 ~~~~~~-------------~~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 80 RCLEDD-------------SGSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred cccCCC-------------CccEeeEeEEEECCEEEEeC
Confidence 998643 23599999999999999853
No 30
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=176.12 Aligned_cols=101 Identities=23% Similarity=0.353 Sum_probs=89.1
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc-CCCcccc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCKF 167 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c~~ 167 (539)
.|+.||.++||++|+.+.+.+. ++++|+|. +|+++|++|+|||++++|+.|.+++++.|+||+|||+|| .+|+|+.
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~--~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~ 78 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV--GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALC 78 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE--CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeC
Confidence 3999999999999999888876 88999986 489999999999999999999997646899999999999 5999987
Q ss_pred CCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCC
Q 009261 168 IPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDI 204 (539)
Q Consensus 168 iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~ 204 (539)
.|. ..+|++|+|++++|.|||.+.+
T Consensus 79 ~p~------------~~~l~~y~v~v~~g~v~v~~~~ 103 (106)
T PRK09965 79 LPA------------TDPLRTYPVHVEGGDIFIDLPE 103 (106)
T ss_pred CCC------------CCCcceEeEEEECCEEEEEccC
Confidence 663 2359999999999999998763
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.88 E-value=2.9e-22 Score=171.12 Aligned_cols=92 Identities=28% Similarity=0.557 Sum_probs=84.1
Q ss_pred eeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc-CCCccccCCCC
Q 009261 93 LMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCKFIPQA 171 (539)
Q Consensus 93 v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c~~iP~~ 171 (539)
||.++||++|++..+++.|++|+|+|. + |+++|++|+|||++++|+.|.+.+ +.|+||||||+|| .+|+|+..|..
T Consensus 3 v~~~~~l~~g~~~~~~~~~~~v~v~r~-~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~CP~Hg~~Fdl~tG~~~~~p~~ 79 (95)
T cd03478 3 VCRLSDLGDGEMKEVDVGDGKVLLVRQ-G-GEVHAIGAKCPHYGAPLAKGVLTD-GRIRCPWHGACFNLRTGDIEDAPAL 79 (95)
T ss_pred eeehhhCCCCCEEEEEeCCcEEEEEEE-C-CEEEEEcCcCcCCCCccCCCeEeC-CEEEcCCCCCEEECCCCcCcCCCcc
Confidence 789999999999999999999999997 3 899999999999999999999975 7999999999999 59999988753
Q ss_pred CCCCCCCCCcccccceeeeEEEeCCeEE
Q 009261 172 PPDGPPVHTSKKACAAVYPSAVQNGILW 199 (539)
Q Consensus 172 ~~~~~~~~~~~~~~l~~ypv~~~~g~vw 199 (539)
..|++||+++++|.||
T Consensus 80 ------------~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 ------------DSLPCYEVEVEDGRVY 95 (95)
T ss_pred ------------CCcceEEEEEECCEEC
Confidence 2389999999999997
No 32
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=169.49 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=87.0
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCC-CCcccccC-CC--eEEcccCCeEEc-CCC
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAP-LSEGRIDQ-WG--RLQCPYHGWCFS-GSG 163 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgap-Ls~G~v~~-~g--~l~CpyHGW~F~-~~G 163 (539)
.|..||..+||++|....+.+.|++|+|||...+|+++|++|+|||.+++ |++|.+.+ ++ .|+||+|||+|| .+|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 49999999999999999999999999999953248999999999999985 99998842 22 499999999999 799
Q ss_pred ccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEc
Q 009261 164 DCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFW 201 (539)
Q Consensus 164 ~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~ 201 (539)
+|...|. .+|++|||++.+|.|||.
T Consensus 83 ~~~~~~~-------------~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQ-------------FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCC-------------ccEeeEeEEEECCEEEEe
Confidence 9986432 359999999999999984
No 33
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.85 E-value=3.5e-21 Score=167.05 Aligned_cols=98 Identities=31% Similarity=0.647 Sum_probs=89.0
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCC-CCCCCCcccccCC---CeEEcccCCeEEc-CCC
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPH-RLAPLSEGRIDQW---GRLQCPYHGWCFS-GSG 163 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpH-rgapLs~G~v~~~---g~l~CpyHGW~F~-~~G 163 (539)
.|.+||.++||+++....+.+.|++|+|||..+ |+++|++|+||| ++++|++|.+++. ..|.||+|+|+|| .+|
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~-~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG 79 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRD-GEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTG 79 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEEST-TEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTT
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCC-CCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCc
Confidence 599999999999999999999999999999854 899999999999 8999999998741 3899999999999 799
Q ss_pred ccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEE
Q 009261 164 DCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWF 200 (539)
Q Consensus 164 ~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV 200 (539)
+|+..| ..++++|||++.+|.|||
T Consensus 80 ~~~~~~-------------~~~l~~ypvrv~~g~V~V 103 (104)
T PF13806_consen 80 ECLEDP-------------DVSLRTYPVRVEDGQVYV 103 (104)
T ss_dssp EESSEC-------------SEBSBEEEEEECTTEEEE
T ss_pred CcCCCC-------------CCcEEeEEEEEECCEEEE
Confidence 998743 255999999999999998
No 34
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.83 E-value=1.5e-20 Score=160.82 Aligned_cols=94 Identities=32% Similarity=0.617 Sum_probs=77.2
Q ss_pred CeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCccc-ccCCCeEEcccCCeEEcCC-Ccc
Q 009261 89 QWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGR-IDQWGRLQCPYHGWCFSGS-GDC 165 (539)
Q Consensus 89 ~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~-v~~~g~l~CpyHGW~F~~~-G~c 165 (539)
+|++|+.++||++ +....+.+ |...+++++. +|+++|++|+|||+|++|+.|. ..+++.|+||||||+||.+ |+|
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~-~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~ 78 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRS-DGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGEC 78 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEET-TTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeC-CCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceE
Confidence 5999999999998 77777788 5555566655 4899999999999999999995 3333699999999999965 999
Q ss_pred ccCCCCCCCCCCCCCcccccceeeeEEEeCC
Q 009261 166 KFIPQAPPDGPPVHTSKKACAAVYPSAVQNG 196 (539)
Q Consensus 166 ~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g 196 (539)
+..|... +++.|||+++++
T Consensus 79 ~~~p~~~------------~l~~~~v~ve~~ 97 (97)
T PF00355_consen 79 VGGPAPR------------PLPLYPVKVEGD 97 (97)
T ss_dssp EESTTCS------------BSTEEEEEEETT
T ss_pred ecCCCCC------------CcCCCCeEEeCC
Confidence 9988542 489999999875
No 35
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.82 E-value=8.4e-20 Score=158.94 Aligned_cols=102 Identities=26% Similarity=0.404 Sum_probs=88.4
Q ss_pred CCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc-CCCccc
Q 009261 88 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCK 166 (539)
Q Consensus 88 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c~ 166 (539)
..|+.+|.++||+++..+.+.+.+...++++.. +|+++|++|+|||.++||+.|.++++..|+||.|||+|| .||+|+
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~-~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~ 81 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRA-DGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECL 81 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEec-CCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCcee
Confidence 469999999999999999988844366666766 489999999999999999999998744699999999999 899999
Q ss_pred cCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcC
Q 009261 167 FIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWP 202 (539)
Q Consensus 167 ~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~ 202 (539)
..|+.. .|++|||++.+|.|||.+
T Consensus 82 ~~p~~~------------~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 82 EPPAGK------------TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred cCCCCC------------ceeEEeEEEECCEEEEec
Confidence 877431 199999999999999975
No 36
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.81 E-value=1.4e-19 Score=155.25 Aligned_cols=92 Identities=28% Similarity=0.418 Sum_probs=83.3
Q ss_pred eEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcC-CCccccC
Q 009261 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSG-SGDCKFI 168 (539)
Q Consensus 90 W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~-~G~c~~i 168 (539)
|++++..++|+++....+.+.|++++|+|+.+ |+++|++|+|||++++|+.|.+++ +.|+||+|||+||. ||+|+..
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~a~~~~CpH~g~~l~~~~~~~-~~i~Cp~H~~~f~~~~G~~~~~ 78 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREG-GEVYALSNRCTHQGCPLSEGEGED-GCIVCPCHGSRFDLRTGEVVSG 78 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCC-CEEEEEcCcCCCCCccCCcCccCC-CEEEeCCCCCEEeCCCccCcCC
Confidence 89999999999999999999999999999864 799999999999999999998664 79999999999996 9999987
Q ss_pred CCCCCCCCCCCCcccccceeeeEEEeC
Q 009261 169 PQAPPDGPPVHTSKKACAAVYPSAVQN 195 (539)
Q Consensus 169 P~~~~~~~~~~~~~~~~l~~ypv~~~~ 195 (539)
|. ...+.+||+++.+
T Consensus 79 p~------------~~~l~~~~v~~~~ 93 (98)
T cd03467 79 PA------------PRPLPKYPVKVEG 93 (98)
T ss_pred CC------------CCCcCEEEEEEeC
Confidence 74 2448999999994
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.79 E-value=3.9e-19 Score=150.63 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=77.1
Q ss_pred eeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccCCCCC
Q 009261 93 LMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAP 172 (539)
Q Consensus 93 v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~iP~~~ 172 (539)
+|..+||++|....+.+.|++|+|+|+.+ |+++|++|+|||+|++|+.|.. ++.|+||||||+||.+|+|+..|..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~-g~~~A~~~~CpH~g~~l~~g~~--~~~i~CP~Hg~~Fd~~G~~~~~Pa~- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDED-GVLHTVSATCTHLGCIVHWNDA--EKSWDCPCHGSRFSYDGEVIEGPAV- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCC-CCEEEEcCcCCCCCCCCcccCC--CCEEECCCCCCEECCCCcEeeCCCC-
Confidence 57889999999999999999999999864 8999999999999999998875 3589999999999999999988743
Q ss_pred CCCCCCCCcccccceeeeEEEeC
Q 009261 173 PDGPPVHTSKKACAAVYPSAVQN 195 (539)
Q Consensus 173 ~~~~~~~~~~~~~l~~ypv~~~~ 195 (539)
..+.+|+|+-.+
T Consensus 78 -----------~~l~~y~v~~~~ 89 (91)
T cd03477 78 -----------SGLKPADDAPID 89 (91)
T ss_pred -----------CCCCeeEeeccc
Confidence 237899987544
No 38
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.78 E-value=1.3e-18 Score=165.45 Aligned_cols=178 Identities=20% Similarity=0.271 Sum_probs=115.9
Q ss_pred eEEEEecChhhHhhhCCCCCCcccccccccccCC------CceEEeccCCee-EEEEEeecC--CCccccc-CCcceeEE
Q 009261 233 GSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRK------PKVMLDREGGRP-IKISFEKID--INGFIAK-QDSESAKF 302 (539)
Q Consensus 233 ~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~------p~~~~~r~~~~~-~~~~~~~~~--~~gf~~~-~~~~~~~F 302 (539)
+.++++|||+.++||++|++|++|+|+++++... +..++...+.+. ......... ..++.+. .......|
T Consensus 4 ~~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196)
T cd08878 4 GYRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEF 83 (196)
T ss_pred CcEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEE
Confidence 3578999999999999999999999999998643 133333332221 111111111 1112111 12345689
Q ss_pred eccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccc-----hhccchhHHHHHh
Q 009261 303 LAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIW-----IDKVVPRWIFHIG 377 (539)
Q Consensus 303 ~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~-----~~~~~prw~~h~~ 377 (539)
++|+++.......+.+ ....+....++++++|+++++|+++|.+.+++... ...+.+.+. ..
T Consensus 84 ~~P~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 150 (196)
T cd08878 84 LLPNVLLIDPGVAPAG-----------TREQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETLR--SG 150 (196)
T ss_pred ECCEEEEEecccccCC-----------cCCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHHH--HH
Confidence 9999887654321110 01123466788999999999999999988887543 122223332 35
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHh
Q 009261 378 QNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYS 429 (539)
Q Consensus 378 ~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~ 429 (539)
.+.|++||+.+++.|++.+... +.+. ....+|+++++||||+++++
T Consensus 151 ~~~v~~eD~~i~e~q~~~~~~~----~~~~--~l~~~D~~~~~~Rr~l~~~~ 196 (196)
T cd08878 151 LSGAFNEDKEAVEAQQRIIDRD----PTRE--HLGLSDKGIVRFRRLLRRLL 196 (196)
T ss_pred hhhhchhHHHHHHHHHHHHhcC----Cccc--ccccccHHHHHHHHHHHHhC
Confidence 6789999999999999987643 2222 33459999999999999863
No 39
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=99.75 E-value=2.9e-18 Score=145.69 Aligned_cols=92 Identities=43% Similarity=0.928 Sum_probs=79.1
Q ss_pred EeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccchhccchhHHHHHhhhhh
Q 009261 302 FLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLI 381 (539)
Q Consensus 302 F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~~~~~prw~~h~~~~~V 381 (539)
|+|||+++..... .+..+.+.+..++++|+|++||+||+++++++||..++.+++|+|+.|+.+|+|
T Consensus 1 F~pPc~v~~~~~~-------------~~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P~wl~H~~~n~V 67 (92)
T PF08417_consen 1 FIPPCLVRSTEEG-------------PKKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIPRWLSHLTSNKV 67 (92)
T ss_pred CCCCEEEEEeccc-------------cccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCCHHHHHHhhCcc
Confidence 7899999865110 012235678899999999999999999999999987888899999999999999
Q ss_pred hhhhHHHHHHHHHHhhhcCCccccc
Q 009261 382 LDSDLCLLHVEERKIMAVGPANWQK 406 (539)
Q Consensus 382 ldqD~~iL~~qe~~l~~~g~~~w~~ 406 (539)
+|||+.+||.||+++++.|.++|+|
T Consensus 68 Ld~Dl~lLh~Qe~~l~~~g~~~W~~ 92 (92)
T PF08417_consen 68 LDQDLYLLHGQERRLAREGADNWQK 92 (92)
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCC
Confidence 9999999999999999888888975
No 40
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.72 E-value=2.4e-17 Score=147.78 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=83.1
Q ss_pred EEeeecCCCCCCCCEEEEEcC--eEEEEEEeC--------CCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc
Q 009261 91 YPLMPVCDLDKRVPHAKKVLG--LDVVVWWDR--------NENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS 160 (539)
Q Consensus 91 ~~v~~~~dl~~~~~~~~~l~g--~~lvl~r~~--------~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~ 160 (539)
+.||.++||++|+...+++.| ++++|+|.. .+|+++|++|+|||.+++|+.|. + ++.|+||+|||+||
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~-~~~v~CP~Hg~~Fd 81 (126)
T cd03476 4 VKVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-S-NKTFVCPCHFSQFD 81 (126)
T ss_pred eEEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-c-CCEEEccCcCCEEe
Confidence 468999999999999999887 889999963 14899999999999999999977 4 47899999999999
Q ss_pred C--CCccccCCCCCCCCCCCCCcccccceeeeEEEe--CCeEEEc
Q 009261 161 G--SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQ--NGILWFW 201 (539)
Q Consensus 161 ~--~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~--~g~vwV~ 201 (539)
. +|+|+..|. ...|++||++++ +|.|||-
T Consensus 82 l~tgG~~~~gPa------------~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 82 PARGGQMVSGQA------------TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCCCeEEcCCC------------CCCCCeEEEEEECCCCEEEEE
Confidence 5 589997663 234999999999 9999984
No 41
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.64 E-value=1.2e-15 Score=136.11 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=69.4
Q ss_pred CCCCEEEE--EcCeEEEEEEeCCCCeE--EEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccCCCCCCCCC
Q 009261 101 KRVPHAKK--VLGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGP 176 (539)
Q Consensus 101 ~~~~~~~~--l~g~~lvl~r~~~~G~~--~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~iP~~~~~~~ 176 (539)
+|....++ ..+..|+|++ . +|++ +|++|+|||+|++|+.|.. ++.|+||+|||+||.+|+++..|.
T Consensus 22 ~~~~~~~~~~~~~~~Ilv~~-~-dg~i~~~A~~~~CpH~G~~l~~~~~--~~~i~CP~Hg~~Fd~tG~~~~gPa------ 91 (126)
T cd03471 22 PGDRSLVQGLKGDPTYLIVE-E-DKTIANYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDATGKVVRGPA------ 91 (126)
T ss_pred CCCeEEEEEecCCeEEEEEe-C-CCeEEEEEecCCCcCCCCCcCccCC--CCEEEcCCCCCEECCCCCEecCCC------
Confidence 45555554 4456666655 4 4777 8999999999999998754 368999999999999999987663
Q ss_pred CCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 177 PVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 177 ~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
...|..|+|++.+|.|||.+..+
T Consensus 92 ------~~~L~~y~V~vedg~I~V~~~~~ 114 (126)
T cd03471 92 ------PLSLALVHATVDDDKVVLSPWTE 114 (126)
T ss_pred ------CCCCceEeEEEECCEEEEEECcc
Confidence 23489999999999999975543
No 42
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.64 E-value=4.8e-16 Score=133.68 Aligned_cols=71 Identities=15% Similarity=0.370 Sum_probs=63.8
Q ss_pred cCCCCCCCCEEEEE-cCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcc--cccCCCeEEcccCCeEEc-CCCccccCC
Q 009261 96 VCDLDKRVPHAKKV-LGLDVVVWWDRNENEWRVFADACPHRLAPLSEG--RIDQWGRLQCPYHGWCFS-GSGDCKFIP 169 (539)
Q Consensus 96 ~~dl~~~~~~~~~l-~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G--~v~~~g~l~CpyHGW~F~-~~G~c~~iP 169 (539)
+.+|++|..+.+.+ .|++|+|++. +|+++|++|+|||++++|+.| .+++ +.|+||+|||+|| .+|+++.-|
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~--~G~~~A~~n~CpH~g~pL~~g~g~~~g-~~V~CP~Hg~~FDLrTG~~~~~p 88 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS--KSELKACKNQCKHQGGLFIKDIEDLDG-RTVRCTKHNWKLDVSTMKYVNPP 88 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE--CCEEEEEcCCCCCCCccccCCcceEeC-CEEEeCCCCCEEEcCCCCCccCC
Confidence 47899999999999 9999999986 489999999999999999994 5764 7999999999999 799998755
No 43
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.63 E-value=1.2e-15 Score=137.15 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=78.8
Q ss_pred EEeeecCCCCCCCCEEEEEcC--eEEEEEEeC--------CCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc
Q 009261 91 YPLMPVCDLDKRVPHAKKVLG--LDVVVWWDR--------NENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS 160 (539)
Q Consensus 91 ~~v~~~~dl~~~~~~~~~l~g--~~lvl~r~~--------~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~ 160 (539)
+.||.++||++|+++.+++.+ .+++|+|.. .+|+++|++|+|||.+++|+.|. + ++.|+||+|||+||
T Consensus 7 ~~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~-~~~i~CP~Hga~Fd 84 (129)
T TIGR02694 7 NRVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-D-NKTFNCPCHFSVFD 84 (129)
T ss_pred eEEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-C-CCEEEcCCCCCEEC
Confidence 458999999999999999865 477887731 24899999999999999999875 3 46999999999999
Q ss_pred CC--CccccCCCCCCCCCCCCCcccccceeeeEEEe-CCeEEE
Q 009261 161 GS--GDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQ-NGILWF 200 (539)
Q Consensus 161 ~~--G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~-~g~vwV 200 (539)
.+ |+|+..|. ..+|.+||+++. +|.||.
T Consensus 85 l~tgG~~~~gP~------------~~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 85 PEKGGQQVWGQA------------TQNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCCCcEECCCC------------CCCCCeeEEEEECCCeEEE
Confidence 54 69987652 234899999997 589983
No 44
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.56 E-value=4.3e-14 Score=133.41 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=104.2
Q ss_pred eEEEEecChhhHhhhCCCCCCcccccccccccCC-------CceEEecc----CCeeEEEEEeecCCCc-c-cccCCcce
Q 009261 233 GSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRK-------PKVMLDRE----GGRPIKISFEKIDING-F-IAKQDSES 299 (539)
Q Consensus 233 ~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~-------p~~~~~r~----~~~~~~~~~~~~~~~g-f-~~~~~~~~ 299 (539)
...+++||||+++||++|+||++++|+++++... ........ ...............+ . ........
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHYRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGYL 82 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCceEEEeccCCCCChhhcccchhhhcccccccccccCeE
Confidence 3578999999999999999999999999986421 11111100 0000000000000000 0 00112235
Q ss_pred eEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccchhccchhHHHHH--h
Q 009261 300 AKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHI--G 377 (539)
Q Consensus 300 ~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~~~~~prw~~h~--~ 377 (539)
..++.|+++.... ...+.+..++|+++++|++.+++.........+...+++... .
T Consensus 83 ~~~~fPn~~~~~~----------------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (188)
T cd00680 83 YLYLFPNLMIGLY----------------------PDSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGI 140 (188)
T ss_pred EEEECCcEeeeec----------------------CCEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHH
Confidence 6778999886321 145667889999999999998865443321111223343332 3
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHh
Q 009261 378 QNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYS 429 (539)
Q Consensus 378 ~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~ 429 (539)
...|++||..+++.||+++.+.+.. ...+ ...+..+..|++|++++.
T Consensus 141 ~~~v~~ED~~~~e~~Q~gl~s~~~~---~~~l--~~~E~~i~~f~~~~~~~~ 187 (188)
T cd00680 141 LRQVLDEDIELCERIQRGLRSGAFR---GGPL--SPLEEGIRHFHRWLRRAL 187 (188)
T ss_pred HHHHHHHHHHHHHHHhccccCCcCC---CCCC--CcccccHHHHHHHHHHhc
Confidence 5689999999999999999876432 2222 235689999999999875
No 45
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.55 E-value=2.9e-14 Score=127.94 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=78.1
Q ss_pred ecCCCCCCCCEEEEEcCeEEEEEEeCC---------------------------CCeEEEEccCCCCCCCCCCcccccCC
Q 009261 95 PVCDLDKRVPHAKKVLGLDVVVWWDRN---------------------------ENEWRVFADACPHRLAPLSEGRIDQW 147 (539)
Q Consensus 95 ~~~dl~~~~~~~~~l~g~~lvl~r~~~---------------------------~G~~~a~~d~CpHrgapLs~G~v~~~ 147 (539)
.+++|++|+.+.+.+.|++|.|+|..+ +|+++|+.++|||.|+.+..+.+.+
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~- 83 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDY- 83 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCC-
Confidence 468999999999999999999998520 3699999999999999988776543
Q ss_pred CeEEcccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeC-CeEEE
Q 009261 148 GRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQN-GILWF 200 (539)
Q Consensus 148 g~l~CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~-g~vwV 200 (539)
+.+.||+|||+||.+|+.+..|.. ..|..||+++.+ +.|+|
T Consensus 84 ~~~~CPcHgs~Fdl~G~~~~gPa~------------~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 84 GGFFCPCHGSHYDASGRIRKGPAP------------LNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred CEEEecCcCCEECCCCeEecCCCC------------CCCCeeeEEEecCCEEEe
Confidence 789999999999999998876532 348999999877 67665
No 46
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.44 E-value=2.3e-12 Score=123.38 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=102.3
Q ss_pred eEEEEecChhhHhhhCCCCCCcccccccccccCCC-c-eEE-eccCCeeEEEEEeec---CC-------CcccccC-Ccc
Q 009261 233 GSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKP-K-VML-DREGGRPIKISFEKI---DI-------NGFIAKQ-DSE 298 (539)
Q Consensus 233 ~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~p-~-~~~-~r~~~~~~~~~~~~~---~~-------~gf~~~~-~~~ 298 (539)
...+++||||+++||++|+||++.+|+++++...+ + ... +..+........... +. .+..... ...
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T cd08885 4 EEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRRL 83 (190)
T ss_pred eeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcce
Confidence 35789999999999999999999999998854321 1 111 111111222221110 10 1111111 223
Q ss_pred eeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccchhccchhHHHH--H
Q 009261 299 SAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFH--I 376 (539)
Q Consensus 299 ~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~~~~~prw~~h--~ 376 (539)
...++.|+++.... .....+..+.|+++++|++.+.+..............|... .
T Consensus 84 ~~~~iFPN~~i~~~----------------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (190)
T cd08885 84 VLFAIFPTHLLALT----------------------PDYVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKA 141 (190)
T ss_pred EEEEECCcEEEEec----------------------CCeEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHH
Confidence 45568999887432 12355667899999999998765333211100001122211 1
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHh
Q 009261 377 GQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYS 429 (539)
Q Consensus 377 ~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~ 429 (539)
....|++||..+++.+|+++.+.+. ....+- ..+..+..|++|+++..
T Consensus 142 ~~~~v~~ED~~~~e~~Q~Gl~S~~~---~~g~l~--~~E~~i~~fh~~l~~~l 189 (190)
T cd08885 142 LLDAINDEDRLVVEGVQRGLGSRFA---VPGRLS--HLERPIWQFQRYLASRL 189 (190)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCC---CCCCCC--cccccHHHHHHHHHHHh
Confidence 2457899999999999999987643 233333 36999999999999864
No 47
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.43 E-value=7.4e-13 Score=125.77 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=70.5
Q ss_pred CCCCCEEEE-EcCeE-EEEEEeCCCCeE--EEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccCCCCCCCC
Q 009261 100 DKRVPHAKK-VLGLD-VVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDG 175 (539)
Q Consensus 100 ~~~~~~~~~-l~g~~-lvl~r~~~~G~~--~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~iP~~~~~~ 175 (539)
++|++..++ +.|.. +++.+ . +|++ +|+++.|||.|++|+.+..+ +.+.||+|||+||.+|+++..|..
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~-~-~g~~~~~a~~~~CtH~gc~l~~~~~~--~~~~CP~Hgs~Fd~tG~~~~gPa~---- 144 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVE-E-DGTIASYGINAVCTHLGCVVPWNSGE--NKFQCPCHGSQYDATGKVVRGPAP---- 144 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEe-C-CCEEEEEEecCCCCCCCCccccccCC--CEEEecCcCCEECCCCCCccCCCC----
Confidence 567777776 66776 55544 3 4898 67799999999999988753 599999999999999998876632
Q ss_pred CCCCCcccccceeeeEEEeCCeEEEcC
Q 009261 176 PPVHTSKKACAAVYPSAVQNGILWFWP 202 (539)
Q Consensus 176 ~~~~~~~~~~l~~ypv~~~~g~vwV~~ 202 (539)
..|+.|+|++.+|.|+|.+
T Consensus 145 --------~~L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 145 --------LSLALVHVTVEDDKVLFSP 163 (178)
T ss_pred --------CCCCeEeEEEECCEEEEEE
Confidence 3489999999999999976
No 48
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.42 E-value=4.1e-12 Score=120.45 Aligned_cols=166 Identities=13% Similarity=0.150 Sum_probs=101.1
Q ss_pred EEEEecChhhHhhhCCCCCCcccccccccccCCC-ceEEeccCCeeEEEEEeecC-CCccccc-CCcceeEEeccEEEEE
Q 009261 234 SRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKP-KVMLDREGGRPIKISFEKID-INGFIAK-QDSESAKFLAPCVFVV 310 (539)
Q Consensus 234 ~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~p-~~~~~r~~~~~~~~~~~~~~-~~gf~~~-~~~~~~~F~~P~~~~~ 310 (539)
..+++||||+++||++|+||++++|++++..... ....+.. +........... ..+.... .......++.|+++..
T Consensus 5 ~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~i~ 83 (175)
T cd08883 5 EYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYATYRTELF-EYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLMLN 83 (175)
T ss_pred EeeeecCceEEehhcCCcccCcccchhHHhhcccCceEEEEc-CcEEEEEecccCCCCccccccCcCeEEEEECCCEeee
Confidence 5688999999999999999999999999854321 2222211 111111111111 1111111 1223456689998874
Q ss_pred eeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccc-hhccchhHHHHHhhhhhhhhhHHHH
Q 009261 311 YFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIW-IDKVVPRWIFHIGQNLILDSDLCLL 389 (539)
Q Consensus 311 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~-~~~~~prw~~h~~~~~VldqD~~iL 389 (539)
.. ...+.++.+.|++|++|++...+....... ......... . ...|++||..++
T Consensus 84 ~~----------------------~~~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~ED~~i~ 138 (175)
T cd08883 84 RY----------------------PPGMDVNVVLPLGPERCKVVFDYFVDDSDGSDEAFIAESI--E-SDRVQKEDIEIC 138 (175)
T ss_pred ec----------------------CCeEEEEEEEeCCCCcEEEEEEEEEeccccchhHHHHHHH--H-HHHHHHHHHHHH
Confidence 31 123556668899999999977653332211 011111111 1 467999999999
Q ss_pred HHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHh
Q 009261 390 HVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYS 429 (539)
Q Consensus 390 ~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~ 429 (539)
+.+|+++.+.+. ..+.+ ....+..+..|++|++++.
T Consensus 139 e~vQ~Gl~S~~~---~~G~l-~~~~E~~v~~Fh~~l~~~l 174 (175)
T cd08883 139 ESVQRGLESGAY---DPGRF-SPKRENGVHHFHRLLAQAL 174 (175)
T ss_pred HHHhhhhcCCCC---CCCCC-CCccchHHHHHHHHHHHhh
Confidence 999999987653 22222 2245899999999999875
No 49
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.36 E-value=1.2e-11 Score=117.67 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=100.4
Q ss_pred EEEEecChhhHhhhCCCCCCcccccccccccCCC-ceEEeccCCeeEEEEEee--------cCCCcccccCCcceeEEec
Q 009261 234 SRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKP-KVMLDREGGRPIKISFEK--------IDINGFIAKQDSESAKFLA 304 (539)
Q Consensus 234 ~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~p-~~~~~r~~~~~~~~~~~~--------~~~~gf~~~~~~~~~~F~~ 304 (539)
..+++||||+++||++|+||++++|+++++.... +.......+....+.... .....+....+......+.
T Consensus 5 ~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lF 84 (185)
T cd08887 5 RFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTLF 84 (185)
T ss_pred eeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEEC
Confidence 5689999999999999999999999999864321 111111112222221110 0000011000112334578
Q ss_pred cEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccchhccchhHHHH-Hhh-hhhh
Q 009261 305 PCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFH-IGQ-NLIL 382 (539)
Q Consensus 305 P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~~~~~prw~~h-~~~-~~Vl 382 (539)
|+++.... ...+.+..+.|+++++|++.+.+..............|... ... ..|+
T Consensus 85 PN~~i~~~----------------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (185)
T cd08887 85 PNVSLLVQ----------------------PDHLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNWDFLMAVVL 142 (185)
T ss_pred CceEEEec----------------------CCeEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHHHHHHhhhH
Confidence 98887421 13456677899999999997765333221111111112111 122 5789
Q ss_pred hhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHh
Q 009261 383 DSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYS 429 (539)
Q Consensus 383 dqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~ 429 (539)
+||..+++.+|+++.+.+.+ .. .+ ...+..+..|++|++++.
T Consensus 143 ~ED~~~~e~~Q~Gl~s~~~~---~~-~l-~~~E~~i~~fh~~~~~~l 184 (185)
T cd08887 143 DEDFEVAEEIQRGLASGAND---HL-TF-GRNESALQHFHRWLERAL 184 (185)
T ss_pred HHHHHHHHHHhhhhhcCCCC---ce-Ee-ecCCHHHHHHHHHHHHHh
Confidence 99999999999999876532 11 22 368999999999999875
No 50
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.32 E-value=2.4e-11 Score=116.05 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=99.6
Q ss_pred eEEEEecChhhHhhhCCCCCCcccccccccccCCC-ceEEeccCCeeEEEEE--eecCCCccccc-CCcceeEEeccEEE
Q 009261 233 GSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKP-KVMLDREGGRPIKISF--EKIDINGFIAK-QDSESAKFLAPCVF 308 (539)
Q Consensus 233 ~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~p-~~~~~r~~~~~~~~~~--~~~~~~gf~~~-~~~~~~~F~~P~~~ 308 (539)
...+++||||+++||++|.||++++|+.+++.... ....+.. +....... ........... .......++.|+++
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 82 (182)
T cd08886 4 LTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTH-GNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM 82 (182)
T ss_pred EEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEec-CcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence 45789999999999999999999999999864321 1111111 11111100 00000000001 11233556889988
Q ss_pred EEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccchhccchhHHHHHhhhhhh-hhhHH
Q 009261 309 VVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLIL-DSDLC 387 (539)
Q Consensus 309 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~~~~~prw~~h~~~~~Vl-dqD~~ 387 (539)
+.... +...+.++.+.|++|++|++.+.+...-....+. .+.. ..+...|+ +||..
T Consensus 83 i~~~~--------------------~~~~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~--~~~~-~~~~~~v~~~ED~~ 139 (182)
T cd08886 83 LNVYP--------------------GAGNMGVINIIPVDAETTLQHYDFYFRDEELTDE--EKEL-IEYYRQVLQPEDLE 139 (182)
T ss_pred EEeeC--------------------CCCeEEEEEEEeCCCCeEEEEEEEEecCCCccHH--HHHH-HHHHHHhcchhhHH
Confidence 74321 1124567778999999999977643211110011 0111 12345677 99999
Q ss_pred HHHHHHHHhhhcCCcccccccccc-----CCCchHHHHHHHHHHH
Q 009261 388 LLHVEERKIMAVGPANWQKACFVP-----TKSDNLVVGFRMWLKK 427 (539)
Q Consensus 388 iL~~qe~~l~~~g~~~w~~~~~vp-----t~aD~~VvafRrWl~k 427 (539)
+++.+|+++.+.+ +....+.+ -..+.++..|++|+++
T Consensus 140 l~e~vQ~Gl~S~~---~~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 140 LVESVQRGLKSRA---FGQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HHHHHhcccccCC---CCCceeccCcccCCccchhHHHHHHHHhc
Confidence 9999999998764 33344432 2468999999999975
No 51
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.30 E-value=9.6e-12 Score=117.75 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=76.8
Q ss_pred eEEeeecCCCCCCCCEEEEEcCeEEEEEEeCC---------------------------------CCeEEEEccCCCCCC
Q 009261 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRN---------------------------------ENEWRVFADACPHRL 136 (539)
Q Consensus 90 W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~---------------------------------~G~~~a~~d~CpHrg 136 (539)
|+.| .++||++|+.+.+.+.|++++|++..+ ++++.|+.+.|||.|
T Consensus 41 ~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~G 119 (174)
T TIGR01416 41 PTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHLG 119 (174)
T ss_pred cEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCCC
Confidence 6777 789999999999999999999998522 379999999999999
Q ss_pred CCC-CcccccCCCeEEcccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCe
Q 009261 137 APL-SEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGI 197 (539)
Q Consensus 137 apL-s~G~v~~~g~l~CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~ 197 (539)
+.+ ..+.....+.+.||+||++||.+|+.+..|.. ..|..||+++.++.
T Consensus 120 c~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~------------~~L~~~~~~~~~~~ 169 (174)
T TIGR01416 120 CIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAP------------LNLPVPPYKFLSDT 169 (174)
T ss_pred CccccccCCCCCCEEEeCCCCCEECCCCcEecCCCC------------CCCCCCCEEEcCCC
Confidence 654 45554423689999999999999998876532 34889999987653
No 52
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.25 E-value=8e-11 Score=114.54 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=100.5
Q ss_pred eEEEEecChhhHhhhCCCCCCccccccccccc-CCC-ceEEe---------ccCCeeE-----EEEEeec--C--CCccc
Q 009261 233 GSRDVPYGYEVLMENLMDPAHLTYAHYGMMRT-RKP-KVMLD---------REGGRPI-----KISFEKI--D--INGFI 292 (539)
Q Consensus 233 ~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~-~~p-~~~~~---------r~~~~~~-----~~~~~~~--~--~~gf~ 292 (539)
...+++||||+++||++|+||++++|+++... ... ..... .....++ .+..... . ..+..
T Consensus 14 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 93 (205)
T cd08884 14 ISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVAPPLPGLT 93 (205)
T ss_pred eEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCcccCCCCCCC
Confidence 35789999999999999999999999998741 110 00000 0000000 0000000 0 01111
Q ss_pred ccC-CcceeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccch-hccch
Q 009261 293 AKQ-DSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWI-DKVVP 370 (539)
Q Consensus 293 ~~~-~~~~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~-~~~~p 370 (539)
... ......++.|+++.... ...+.++.+.|+++++|++.+.+........ .+...
T Consensus 94 ~~~~~~~~~~~lfPN~~~~~~----------------------~d~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~~~ 151 (205)
T cd08884 94 EADDRGALYYTLYPNSFLHLH----------------------PDHVVTFRVLPLSPDETLVRCKWLVHPDAVEGVDYDL 151 (205)
T ss_pred ccccCceEEEEeCCcEEEEEc----------------------CCEEEEEEEEeCCCCceEEEEEEEECCchhcccccCH
Confidence 111 22345668999876421 1356677889999999999776432221100 01111
Q ss_pred hHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHh
Q 009261 371 RWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYS 429 (539)
Q Consensus 371 rw~~h~~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~ 429 (539)
+-+ ......|++||..+++.+|+++.+.+ +....+.+ .+..+..|.+|+++.+
T Consensus 152 ~~~-~~~~~~v~~ED~~i~e~vQ~Gl~S~~---~~~g~l~~--~E~~v~~F~~~~~~~l 204 (205)
T cd08884 152 DDL-VEVWDATNRQDWAICERNQRGVNSPA---YRPGPYSP--MEGGVLAFDRWYLERM 204 (205)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhcccccCCC---cCCCCcCC--ccHHHHHHHHHHHHHh
Confidence 111 23456799999999999999998764 33344433 6799999999999865
No 53
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.17 E-value=3.8e-11 Score=114.69 Aligned_cols=169 Identities=13% Similarity=0.193 Sum_probs=97.1
Q ss_pred EEEecChhhHhhhCCCCCCcccccccccccCCC---c----eEEeccCCeeEEEE-----------EeecCCCcccc---
Q 009261 235 RDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKP---K----VMLDREGGRPIKIS-----------FEKIDINGFIA--- 293 (539)
Q Consensus 235 ~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~p---~----~~~~r~~~~~~~~~-----------~~~~~~~gf~~--- 293 (539)
.+++||||+++||++|+||++++|+++++.... . ...+..++...... .......+...
T Consensus 12 ~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (209)
T PF00848_consen 12 YEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPPG 91 (209)
T ss_dssp HHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred EEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhcccc
Confidence 568999999999999999999999999653221 1 01111111000000 00000000000
Q ss_pred ---c-CCcceeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCccc-chhcc
Q 009261 294 ---K-QDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQI-WIDKV 368 (539)
Q Consensus 294 ---~-~~~~~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~-~~~~~ 368 (539)
. ........+.|+++..... . ...+...+|++|++|++.+........ ...+.
T Consensus 92 ~~~~~~~~~~~~~iFPn~~i~~~~-------------------~---~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~ 149 (209)
T PF00848_consen 92 LPDDQRMGYRNYVIFPNLSIIVYP-------------------D---HFTVRTIIPIGPDRTEVWSWWFVPKDEGAPPEF 149 (209)
T ss_dssp HHHHHHTSEEEEEETTTEEEEE-T-------------------T---TTEEEEEEEESTTEEEEEEEEEEETT--STHHH
T ss_pred ccccccccccceeeCCCEEEEecc-------------------c---ccEEEEEEECCCCeEEEEEEEEEeCCcccchhh
Confidence 0 0123466789998875210 1 122667899999999997765332221 10111
Q ss_pred chhHHHHHhhhh--hhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHhC
Q 009261 369 VPRWIFHIGQNL--ILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSG 430 (539)
Q Consensus 369 ~prw~~h~~~~~--VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~~ 430 (539)
..++ ....... ++.||..+++.||+.+.+.+. .... +....|..|..|++|+++++.
T Consensus 150 ~~~~-~~~~~~~~~~~~ED~~~~e~~Q~gl~s~~~---~~~~-~~~~~E~~v~~f~~~~~~~~~ 208 (209)
T PF00848_consen 150 REAR-IRNWDRFFGVFAEDIEIVERQQRGLRSRGF---DPGR-LSGTSERGVRHFHRWWRRYMA 208 (209)
T ss_dssp HHHH-HHHHHHHHSTHHHHHHHHHHHHHHTTSSTS---CTSE-ESSCSSHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHhcCcHHHHHHHHHHHHHHHHcCCCC---CCCC-CCCcCCHHHHHHHHHHHHHhc
Confidence 1111 1111121 899999999999999987543 2223 335799999999999999863
No 54
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.83 E-value=2e-08 Score=93.97 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=49.7
Q ss_pred CCeEEEEccCCCCCCCCCC---------------cccccCCCeEEcccCCeEEcC-CCc-cccCCCCCCCCCCCCCcccc
Q 009261 122 ENEWRVFADACPHRLAPLS---------------EGRIDQWGRLQCPYHGWCFSG-SGD-CKFIPQAPPDGPPVHTSKKA 184 (539)
Q Consensus 122 ~G~~~a~~d~CpHrgapLs---------------~G~v~~~g~l~CpyHGW~F~~-~G~-c~~iP~~~~~~~~~~~~~~~ 184 (539)
+|+++|++++|||+|++|. +|...+ +.|.||+|||+||. +|. .+..|. ..
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~-~~i~CPcHgS~FD~~tGg~v~~GPA------------~~ 140 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKG-AVIHCCCHGSTYDPYKGGVVLTGPA------------PR 140 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccccC-CEEEcCCCCCEEeCCCCCeEcCCCC------------CC
Confidence 3799999999999999775 344443 79999999999994 564 443231 23
Q ss_pred cceeeeEEEeC--CeEEE
Q 009261 185 CAAVYPSAVQN--GILWF 200 (539)
Q Consensus 185 ~l~~ypv~~~~--g~vwV 200 (539)
.|+.|++++.+ |.||.
T Consensus 141 pLp~~~L~~d~~~d~iyA 158 (171)
T cd03475 141 PLPAVILEYDSSTDDLYA 158 (171)
T ss_pred CcCEeEEEEeCCCCcEEE
Confidence 48999999884 77875
No 55
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.72 E-value=2e-07 Score=91.92 Aligned_cols=172 Identities=14% Similarity=0.191 Sum_probs=94.8
Q ss_pred EEEEecChhhHhhhCCCCCCcccccc--cccccCCC--c--eEEeccCCeeEEEEEeecCCC----c-----------cc
Q 009261 234 SRDVPYGYEVLMENLMDPAHLTYAHY--GMMRTRKP--K--VMLDREGGRPIKISFEKIDIN----G-----------FI 292 (539)
Q Consensus 234 ~~~~~~~~~~~vEN~lD~~H~~~~H~--~~~~~~~p--~--~~~~r~~~~~~~~~~~~~~~~----g-----------f~ 292 (539)
..++++|||+.+||+.|+||++.+|. .+++...+ . ...+..+ ....+........ + +.
T Consensus 5 ~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~~~~~~~~~~~~~~~g-~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T cd08880 5 RQRIPGNWKLYAENVKDPYHASLLHLFFVTFGLWRADQKSSIIDDEHG-RHSVMTSTKSGDDEAAEKDSEEIRSFRDDFT 83 (222)
T ss_pred eeecCCCcHHHHHhccCcchHHHHhhhheeeecccCCCCCceEEecCC-CceEEEEecCCCcccccchHHHHHHHhhccc
Confidence 45789999999999999999999999 77754221 1 2233222 2222222211100 0 10
Q ss_pred --cc-----------CCcceeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEecc
Q 009261 293 --AK-----------QDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPR 359 (539)
Q Consensus 293 --~~-----------~~~~~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r 359 (539)
.. ........+.|+++.... ...+.+....|++|++|++.|.+..
T Consensus 84 l~d~~~~~~~~e~~~~~~~~~~~iFPNl~l~~~----------------------~~~l~v~~~~P~gpd~t~~~~~~~~ 141 (222)
T cd08880 84 LLDPSLLDGRAEFDDDITLVIQSIFPSLVVQQI----------------------QNTLAVRHIIPKGPDSFELVWTYFG 141 (222)
T ss_pred cCCHHHHhhhHhhcCCCceEEEEECCCEEEecc----------------------CCcEEEEEEEecCCCeEEEEEEEEE
Confidence 00 011234557888876321 1345566788999999998776531
Q ss_pred CcccchhccchhHHHHHh----hhhhhhhhHHHHHHHHHHhhhcCCc-ccc-cc-----ccccCCCchHHHHHHHHHHHH
Q 009261 360 NFQIWIDKVVPRWIFHIG----QNLILDSDLCLLHVEERKIMAVGPA-NWQ-KA-----CFVPTKSDNLVVGFRMWLKKY 428 (539)
Q Consensus 360 ~f~~~~~~~~prw~~h~~----~~~VldqD~~iL~~qe~~l~~~g~~-~w~-~~-----~~vpt~aD~~VvafRrWl~k~ 428 (539)
.-. ........+..+.. ...|.+||..+++.+|+.+.+.+.. .+- -+ ..-....+..+..|-+|++++
T Consensus 142 ~~~-~~~e~~~~~~~~~~~~gp~g~v~~ED~ei~e~vQ~Gl~s~~~~~~~~~~g~~~~~~~~~~~~E~~ir~f~~~y~~~ 220 (222)
T cd08880 142 YED-DDEEMTRLRLRQANLVGPAGFVSMEDGEAIEFVQRGVEGDGGDRSVIEMGGGDVESSDHMVTEAAIRGFWKYYRKV 220 (222)
T ss_pred ecC-CCHHHHHHHHHHhcccCCcCCCccchHHHHHHhCchhcCCCcccchhhhCCCCCCCcCcccCcHHHHHHHHHHHHH
Confidence 111 11111112222111 1358899999999999999765433 110 00 000113567777777777776
Q ss_pred h
Q 009261 429 S 429 (539)
Q Consensus 429 ~ 429 (539)
+
T Consensus 221 M 221 (222)
T cd08880 221 M 221 (222)
T ss_pred h
Confidence 5
No 56
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.66 E-value=9.6e-08 Score=95.53 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=54.1
Q ss_pred EEEEEEEe--CCCCeEEEEEEeccCcccchhccc-----hhHHH--HH-hhhhhhhhhHHHHHHHHHHhhhcCCcccccc
Q 009261 338 AMIFICAP--VSPGNSRVIWAFPRNFQIWIDKVV-----PRWIF--HI-GQNLILDSDLCLLHVEERKIMAVGPANWQKA 407 (539)
Q Consensus 338 ~~v~~~~P--vspg~tr~~~~~~r~f~~~~~~~~-----prw~~--h~-~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~ 407 (539)
..+..+.| ++|++|++...+............ ..|.. .. ....|++||..+++.+|+++.+.+.. .
T Consensus 145 ~~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ED~~~~e~vQ~Gl~S~~~~---~- 220 (243)
T cd08882 145 LLVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDAPELGGLGLVLDQDFSNLPAVQKGMHSRGFG---G- 220 (243)
T ss_pred cEEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccccccccccchhHhHHHHHHHHHHHhccCCCC---C-
Confidence 45666788 599999996543211110000000 01110 11 13579999999999999999886533 1
Q ss_pred ccccCCCchHHHHHHHHHHHHhC
Q 009261 408 CFVPTKSDNLVVGFRMWLKKYSG 430 (539)
Q Consensus 408 ~~vpt~aD~~VvafRrWl~k~~~ 430 (539)
..+.-..+..|..|++||+++++
T Consensus 221 ~~l~~~EE~~I~~FH~~l~~~l~ 243 (243)
T cd08882 221 LVLANQEESRIRHFHEVLDDYLA 243 (243)
T ss_pred cccCchHHHHHHHHHHHHHHHhC
Confidence 12222235999999999999863
No 57
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.32 E-value=7.5e-06 Score=79.69 Aligned_cols=91 Identities=10% Similarity=0.141 Sum_probs=60.3
Q ss_pred eEEEEEEEEeCCCCeEEEEEEeccCccc------chhccchhHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCcccccccc
Q 009261 336 RVAMIFICAPVSPGNSRVIWAFPRNFQI------WIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACF 409 (539)
Q Consensus 336 ~~~~v~~~~Pvspg~tr~~~~~~r~f~~------~~~~~~prw~~h~~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~ 409 (539)
.++..-..+|++..+.+++-...+.... +..+...+|.. ...+.++++|+..-+++|...++. ..|.+ +
T Consensus 142 ~~~qyEwYVPID~~~h~Y~q~l~~~~~t~ee~~~f~~~f~~~~~~-~~l~gFN~~D~wAREamq~fY~d~--~Gw~~--E 216 (240)
T PF11723_consen 142 DFTQYEWYVPIDEDTHRYFQLLGKVCPTEEERKAFEYEFEEQWKP-LALHGFNDDDIWAREAMQPFYADD--TGWDR--E 216 (240)
T ss_dssp TEEEEEEEEEEETTEEEEEEEEEEE-SSHHHHHHHHHHHHHTHHH-HTTTTTTHHHHHHHHHHHHHHHTS--HHHHH---
T ss_pred CeeEEEEEEEecccceeeEeEEeeecCCHHHHHHHHHHHHHHhHH-hhccCCCchhHHHHHHhhhhhhcc--CCCCH--H
Confidence 4666777799999999998765443211 11112223332 345778999999999999877653 33643 4
Q ss_pred ccCCCchHHHHHHHHHHHHhCC
Q 009261 410 VPTKSDNLVVGFRMWLKKYSGG 431 (539)
Q Consensus 410 vpt~aD~~VvafRrWl~k~~~g 431 (539)
...+.|..++++||...++..|
T Consensus 217 ~L~~~D~sIi~WRkLas~~nrg 238 (240)
T PF11723_consen 217 QLFEPDKSIIAWRKLASEHNRG 238 (240)
T ss_dssp ---GGGHHHHHHHHHHHHH-SE
T ss_pred HhcCcchhHHHHHHHHHHhhcc
Confidence 4567999999999999998764
No 58
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.11 E-value=7.3e-06 Score=78.05 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=50.9
Q ss_pred eEEEEccCCCCCCCCCCc-ccccCCCeEEcccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEE
Q 009261 124 EWRVFADACPHRLAPLSE-GRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWF 200 (539)
Q Consensus 124 ~~~a~~d~CpHrgapLs~-G~v~~~g~l~CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV 200 (539)
+|.|+...|.|.|+.... +... ++.+.||+||.+||.+|+.+..|.. ..|+.++++..++-+++
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~~-~~~~~CPCHGS~yd~~g~vv~GPA~------------~~L~~~~~~~~~d~~~~ 164 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAGA-EGGFFCPCHGSRYDPDGGVVKGPAP------------RPLPIPPLEYDSDKLYL 164 (177)
T ss_pred cEEEEeeeccCCCCccCcccCCC-CCeEEccCCCCeEcCCCCeeCCCCC------------CCcCCceEEEeCCceEE
Confidence 567999999999999987 3343 4799999999999999997776643 33788888888775544
No 59
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.08 E-value=2.9e-05 Score=77.44 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=27.6
Q ss_pred EEEEecChhhHhhhCCCCCCcccccccccc
Q 009261 234 SRDVPYGYEVLMENLMDPAHLTYAHYGMMR 263 (539)
Q Consensus 234 ~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~ 263 (539)
.+.++||||.++||+.|.||++++|..++.
T Consensus 5 ~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 5 RYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred EEEeeceEEEEeeecCccccCccccHHHHH
Confidence 467899999999999999999999999874
No 60
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.01 E-value=1.8e-05 Score=77.19 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=27.6
Q ss_pred EEEEecChhhHhhhCC-CCCCcccccccccc
Q 009261 234 SRDVPYGYEVLMENLM-DPAHLTYAHYGMMR 263 (539)
Q Consensus 234 ~~~~~~~~~~~vEN~l-D~~H~~~~H~~~~~ 263 (539)
...++||||.++||++ |.||++++|..++.
T Consensus 10 ~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~ 40 (206)
T cd08881 10 KWVIKANWKLAAENFAGDGYHTGTTHASALE 40 (206)
T ss_pred EEEecCcceehhhccccccccchhhhHHHHH
Confidence 5678999999999999 99999999999874
No 61
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=97.68 E-value=5.8e-05 Score=71.39 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=55.8
Q ss_pred cCCCCCCCCEEEEEcCeEEEEE--------------------------EeCCCCeEEEEccCCCCCCCCCCcccccCCCe
Q 009261 96 VCDLDKRVPHAKKVLGLDVVVW--------------------------WDRNENEWRVFADACPHRLAPLSEGRIDQWGR 149 (539)
Q Consensus 96 ~~dl~~~~~~~~~l~g~~lvl~--------------------------r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~ 149 (539)
..|||+|+-.++...|++|+|= |.++ -+|.++..+|.|.|+-.-....+ .|.
T Consensus 92 l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~-~ewl~~igVCThLGCVp~~~AGd-~gg 169 (210)
T KOG1671|consen 92 LSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKK-PEWLVVIGVCTHLGCVPIANAGD-YGG 169 (210)
T ss_pred eecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccC-cceEEEEeeeccccccccccccc-cCc
Confidence 4677777777777777777762 3333 36899999999999876543333 367
Q ss_pred EEcccCCeEEcCCCccccCCC
Q 009261 150 LQCPYHGWCFSGSGDCKFIPQ 170 (539)
Q Consensus 150 l~CpyHGW~F~~~G~c~~iP~ 170 (539)
..||+||..||..|+....|.
T Consensus 170 ~~CPCHGSHYdasGRIrkGPA 190 (210)
T KOG1671|consen 170 YYCPCHGSHYDASGRIRKGPA 190 (210)
T ss_pred eecccccccccccCceecCCC
Confidence 999999999999999999884
No 62
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=97.63 E-value=0.00012 Score=74.66 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=47.6
Q ss_pred CeEEEEccCCCCCCCCCCcc------cc--------------------c--C--CCeEEcccCCeEEcC--CCccccCCC
Q 009261 123 NEWRVFADACPHRLAPLSEG------RI--------------------D--Q--WGRLQCPYHGWCFSG--SGDCKFIPQ 170 (539)
Q Consensus 123 G~~~a~~d~CpHrgapLs~G------~v--------------------~--~--~g~l~CpyHGW~F~~--~G~c~~iP~ 170 (539)
+.+.|++..|+|.|++++.- .+ + . .+.+.||+||.+||. .|+.+..|.
T Consensus 176 ~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GPA 255 (321)
T TIGR03171 176 KSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGPT 255 (321)
T ss_pred CCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCCC
Confidence 57999999999999998331 00 0 0 138999999999994 357777664
Q ss_pred CCCCCCCCCCcccccceeeeEEEe--CCeEEEc
Q 009261 171 APPDGPPVHTSKKACAAVYPSAVQ--NGILWFW 201 (539)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~ypv~~~--~g~vwV~ 201 (539)
. ..|..+++++. +|.|+.-
T Consensus 256 ~------------rpLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 256 V------------RPLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred C------------CCCCcceEEEeCCCCeEEEE
Confidence 3 23677887776 4667753
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.25 E-value=0.0032 Score=67.57 Aligned_cols=38 Identities=42% Similarity=0.901 Sum_probs=33.7
Q ss_pred CCCCCCCcccccCCCeEEcccCCeEEc-CCCccccCCCCC
Q 009261 134 HRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCKFIPQAP 172 (539)
Q Consensus 134 HrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c~~iP~~~ 172 (539)
|.|+||..|-. .+|+++|||||.+|+ .+|...+-|..+
T Consensus 1 hygapl~~g~~-s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGVL-SRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhccc-cCCcccccccceeecCCcCchhhCcCcc
Confidence 89999999955 469999999999999 799999988754
No 64
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=69.65 E-value=2.9 Score=28.56 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCCChhhhhHhHHhhccCChhhHH
Q 009261 421 FRMWLKKYSGGQFNWGGKFDATLPPTLPREQLMDRYWSHVVNCKSCNA 468 (539)
Q Consensus 421 fRrWl~k~~~g~p~w~~~~~~~lp~~~~~~~lldRy~~Ht~~C~sC~~ 468 (539)
++.++..|..|..+ +.--.|...|..+|++|+.
T Consensus 4 ~~~~l~~y~dg~L~---------------~~~~~~~~~HL~~C~~C~~ 36 (36)
T PF13490_consen 4 VRELLSAYLDGELS---------------PEERARLEAHLASCPSCRE 36 (36)
T ss_dssp -HHHHHHHHCT-S----------------HHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHcCCCC---------------HHHHHHHHHHHHcCHHhcC
Confidence 56667777654321 1456789999999999984
No 65
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=69.21 E-value=5.8 Score=32.98 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCCChhhhhHhHHhhccCChhhHHHHHHHHHHHHHH
Q 009261 420 GFRMWLKKYSGGQFNWGGKFDATLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVIL 480 (539)
Q Consensus 420 afRrWl~k~~~g~p~w~~~~~~~lp~~~~~~~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~ 480 (539)
.++..|..|+-|+ |++ .--.+++.|...|+.|+..+...++++.++
T Consensus 11 e~~~~l~~ylDge----------L~~-----~e~~~~e~HL~~C~~C~~e~~~~~~~~~~L 56 (84)
T TIGR02949 11 EVIDHLYEFLDGE----------MGP-----SDREQLRRHLEACPECLEEYGLEQAVKKLL 56 (84)
T ss_pred HHHHHHHHHHcCC----------CCH-----HHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 4456677776543 322 446789999999999999998777665443
No 66
>PLN02518 pheophorbide a oxygenase
Probab=66.84 E-value=10 Score=42.40 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=57.2
Q ss_pred hhhHhHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhcceE
Q 009261 451 QLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFH 530 (539)
Q Consensus 451 ~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~l~~~~~~~f~ 530 (539)
+-+.+--.|=..|+.=.+.++.++.+-.++.++.++++++.......++.. ++.+++|++++++.++..+|++.+|.
T Consensus 458 dRy~~Ht~~C~SC~~Alk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~f~~~~~~ 534 (539)
T PLN02518 458 DRFEQHTLNCSSCKGAYKAFQTLQKVLIGATVVFAATAGIPSDVQLRLILA---GLALISAASAYALKELEKNFVFVDYV 534 (539)
T ss_pred HHHHhhCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH---HHHHHHHHHHHHHHHHHhhceecCcc
Confidence 456677789999999999999999876666666656565543322222111 14566677788899999999999998
Q ss_pred Eec
Q 009261 531 YHD 533 (539)
Q Consensus 531 f~d 533 (539)
+.+
T Consensus 535 ~~~ 537 (539)
T PLN02518 535 HAE 537 (539)
T ss_pred Ccc
Confidence 765
No 67
>PRK10853 putative reductase; Provisional
Probab=66.50 E-value=4 Score=36.24 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=15.5
Q ss_pred hccCChhhHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNA 475 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~ 475 (539)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 6 GIKNCDTIKKARRWLEA 22 (118)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 67899999999999986
No 68
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=63.51 E-value=4.7 Score=35.26 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=16.0
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|..+|++|++|++.++.-
T Consensus 5 ~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 5 HNPRCSKSRNALALLEEA 22 (112)
T ss_pred ECCCCHHHHHHHHHHHHC
Confidence 678999999999999874
No 69
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=62.81 E-value=4.9 Score=35.35 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=15.4
Q ss_pred hccCChhhHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNA 475 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~ 475 (539)
|..+|++|++|++.++.
T Consensus 6 ~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 6 EKPGCANNARQKALLEA 22 (113)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999986
No 70
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=61.65 E-value=5.1 Score=34.73 Aligned_cols=18 Identities=33% Similarity=0.467 Sum_probs=14.3
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|..+|++|++|++.++.-
T Consensus 2 ~~~~C~t~rka~~~L~~~ 19 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEEN 19 (110)
T ss_dssp E-TT-HHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHc
Confidence 568999999999999974
No 71
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=60.93 E-value=5.7 Score=35.27 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=16.3
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|..+|.+|++|+++++.-
T Consensus 7 ~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 7 GNPNCSTCRKALAWLEEH 24 (117)
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 678999999999999873
No 72
>PRK10026 arsenate reductase; Provisional
Probab=60.61 E-value=5.6 Score=36.52 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=15.3
Q ss_pred hccCChhhHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNA 475 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~ 475 (539)
|-.+|++|++|+++++.
T Consensus 8 ~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 8 HNPACGTSRNTLEMIRN 24 (141)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 66899999999999985
No 73
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=57.98 E-value=6.8 Score=33.90 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.8
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|..+|++|++|++.++.-
T Consensus 5 ~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 5 GIKNCDTVKKARKWLEAR 22 (105)
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 678999999999999863
No 74
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=57.04 E-value=6.3 Score=34.54 Aligned_cols=36 Identities=33% Similarity=0.699 Sum_probs=24.6
Q ss_pred CeEEEEccCCCCCCCCCCcccccC-CCeEEcccCCeEEcC
Q 009261 123 NEWRVFADACPHRLAPLSEGRIDQ-WGRLQCPYHGWCFSG 161 (539)
Q Consensus 123 G~~~a~~d~CpHrgapLs~G~v~~-~g~l~CpyHGW~F~~ 161 (539)
|++--..-.|. |||..|.+.. .+.+.||+||=-.+.
T Consensus 63 g~~e~v~~~Cr---APL~~G~LC~RrD~~kCPfHG~IIpR 99 (110)
T PF09740_consen 63 GEFEPVPHACR---APLPNGGLCPRRDRKKCPFHGKIIPR 99 (110)
T ss_pred CccCcCchhhc---CCCCCCCcCCccCcccCCCCCcccCC
Confidence 45555555564 6788888763 247899999976663
No 75
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=56.29 E-value=7.4 Score=34.14 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.7
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|-.+|++|++|++.++.-
T Consensus 5 ~~~~C~t~rkA~~~L~~~ 22 (114)
T TIGR00014 5 HNPRCSKSRNTLALLEDK 22 (114)
T ss_pred ECCCCHHHHHHHHHHHHC
Confidence 567999999999999874
No 76
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=56.04 E-value=77 Score=27.08 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=15.5
Q ss_pred hHHhhccCChhhHHHHHHHHHHHHHHH
Q 009261 455 RYWSHVVNCKSCNAAHKSLNALEVILQ 481 (539)
Q Consensus 455 Ry~~Ht~~C~sC~~Al~~~~~~~~~~~ 481 (539)
+|+..-+...+|++-++.++.+..++.
T Consensus 3 ~~~~y~~~a~~~q~~~~~~~~~~i~~~ 29 (112)
T PF14015_consen 3 QIDWYDKKARRAQRRYRRLRIASIILS 29 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455667777777776654443
No 77
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=52.92 E-value=9.2 Score=34.57 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=16.0
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|..+|++|++|++.++.-
T Consensus 6 ~~~~C~~crkA~~~L~~~ 23 (132)
T PRK13344 6 TISSCTSCKKAKTWLNAH 23 (132)
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 778999999999999863
No 78
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=50.46 E-value=10 Score=34.00 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=15.1
Q ss_pred hccCChhhHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNA 475 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~ 475 (539)
|-.+|++|++|+++++.
T Consensus 7 ~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 7 EKPGCANNARQKAALKA 23 (126)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 55799999999999985
No 79
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=49.18 E-value=11 Score=32.73 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=15.4
Q ss_pred hccCChhhHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNA 475 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~ 475 (539)
|...|++|++|.+.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 5 EYPKCSTCRKAKKWLDE 21 (111)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 56899999999999987
No 80
>PRK12559 transcriptional regulator Spx; Provisional
Probab=43.82 E-value=15 Score=33.10 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.6
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|..+|++|++|++.++.-
T Consensus 6 ~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 6 TTASCASCRKAKAWLEEN 23 (131)
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 568999999999999863
No 81
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=41.20 E-value=18 Score=31.62 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=15.8
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|..+|+.|++|++.++..
T Consensus 6 ~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 6 TSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred eCCCCHHHHHHHHHHHHC
Confidence 568999999999999873
No 82
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=38.66 E-value=21 Score=32.20 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=15.8
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|..+|+.|++|++.++.-
T Consensus 6 ~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 6 TSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 578999999999999873
No 83
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=38.55 E-value=21 Score=30.45 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.4
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|..+|++|++|++.++..
T Consensus 5 ~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 5 GNPNCSTSRKALAWLEEH 22 (105)
T ss_pred ECCCCHHHHHHHHHHHHc
Confidence 457899999999999874
No 84
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=38.38 E-value=21 Score=31.21 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=15.4
Q ss_pred hccCChhhHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNA 475 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~ 475 (539)
|...|++|++|++.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEA 21 (117)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56799999999999987
No 85
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=34.80 E-value=65 Score=31.52 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=16.2
Q ss_pred hhhHhHHhhccCChhhHHH
Q 009261 451 QLMDRYWSHVVNCKSCNAA 469 (539)
Q Consensus 451 ~lldRy~~Ht~~C~sC~~A 469 (539)
=|++-|+.--..|++|++.
T Consensus 180 FLfnt~tnaLArCPHCrKv 198 (275)
T KOG4684|consen 180 FLFNTLTNALARCPHCRKV 198 (275)
T ss_pred eehhhHHHHHhcCCcccch
Confidence 4888888888999999875
No 86
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=32.67 E-value=8.9 Score=37.28 Aligned_cols=20 Identities=45% Similarity=0.773 Sum_probs=16.6
Q ss_pred hhhHhHHhhccCChhhHHHH
Q 009261 451 QLMDRYWSHVVNCKSCNAAH 470 (539)
Q Consensus 451 ~lldRy~~Ht~~C~sC~~Al 470 (539)
.|--+-+||+++|.||..|-
T Consensus 91 ~~egk~~QHVVKC~~CnEAT 110 (275)
T KOG4684|consen 91 SLEGKNQQHVVKCHSCNEAT 110 (275)
T ss_pred ccccccceeeEeecccCccc
Confidence 35568899999999999874
No 87
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=31.15 E-value=29 Score=31.38 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.5
Q ss_pred EEccCCCCCCCCCCcccccCCCeEEcccCCeEEc
Q 009261 127 VFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS 160 (539)
Q Consensus 127 a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~ 160 (539)
-++.-||-=|+||.+ .+|.+.||-||-++.
T Consensus 26 ML~~hCp~Cg~PLF~----KdG~v~CPvC~~~~~ 55 (131)
T COG1645 26 MLAKHCPKCGTPLFR----KDGEVFCPVCGYREV 55 (131)
T ss_pred HHHhhCcccCCccee----eCCeEECCCCCceEE
Confidence 467789999999986 468999999998776
No 88
>PF07627 PSCyt3: Protein of unknown function (DUF1588); InterPro: IPR013039 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=30.69 E-value=99 Score=26.72 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=15.7
Q ss_pred hhhHhHHhhc--cCChhhHHHH
Q 009261 451 QLMDRYWSHV--VNCKSCNAAH 470 (539)
Q Consensus 451 ~lldRy~~Ht--~~C~sC~~Al 470 (539)
-+=+|+..|+ ..|.+|=+-+
T Consensus 58 T~Re~~~~h~~~~~Ca~CH~~i 79 (101)
T PF07627_consen 58 TNRERLEQHTENPACASCHRKI 79 (101)
T ss_pred CHHHHHHhhcCCCcHHHHhhhh
Confidence 5778889999 6799997643
No 89
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=28.97 E-value=2.3e+02 Score=21.40 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 009261 506 TIVSFAVICFAASKWLSHFVYK 527 (539)
Q Consensus 506 ~~~~~a~l~~~~~~~l~~~~~~ 527 (539)
..++.|+++|.+.--+++|+++
T Consensus 34 ialv~all~Fvgtva~arfl~r 55 (55)
T PF04066_consen 34 IALVYALLGFVGTVAFARFLER 55 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 6788889999999998988875
No 90
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=27.20 E-value=44 Score=26.22 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=14.6
Q ss_pred ccCChhhHHHHHHHHHH
Q 009261 460 VVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 460 t~~C~sC~~Al~~~~~~ 476 (539)
...|+.|++|.+.++..
T Consensus 8 ~~~C~~C~ka~~~L~~~ 24 (73)
T cd03027 8 RLGCEDCTAVRLFLREK 24 (73)
T ss_pred cCCChhHHHHHHHHHHC
Confidence 46899999999999874
No 91
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=26.95 E-value=12 Score=37.57 Aligned_cols=20 Identities=35% Similarity=0.755 Sum_probs=17.5
Q ss_pred hhhHhHHhhccCChhhHHHH
Q 009261 451 QLMDRYWSHVVNCKSCNAAH 470 (539)
Q Consensus 451 ~lldRy~~Ht~~C~sC~~Al 470 (539)
.+-++.+||++.|..|+.|-
T Consensus 76 ~i~gk~~QhVVkC~~CnEAT 95 (256)
T PF09788_consen 76 DIEGKMHQHVVKCSVCNEAT 95 (256)
T ss_pred cccCccceeeEECCCCCccc
Confidence 56789999999999999874
No 92
>COG5660 Predicted integral membrane protein [Function unknown]
Probab=24.66 E-value=77 Score=31.04 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=15.2
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|-++|++|+.-+..+..+
T Consensus 30 HL~nCsaCR~~y~~vAel 47 (238)
T COG5660 30 HLGNCSACRAWYDQVAEL 47 (238)
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 999999999988776543
No 93
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=24.30 E-value=2.3e+02 Score=28.04 Aligned_cols=38 Identities=3% Similarity=0.034 Sum_probs=21.0
Q ss_pred hhhHhHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009261 451 QLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGI 490 (539)
Q Consensus 451 ~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~~~~~~~g~ 490 (539)
.|.++|..+...=++=++ ..+..+++-....+++++++
T Consensus 7 Dl~~~~~a~~~~~~~~~~--~~~~~~~k~~r~~Al~alil 44 (218)
T PF10039_consen 7 DLNAAWMAFNEKLPNNKK--GVFRMWRKYKRAIALAALIL 44 (218)
T ss_pred cHHHHHHHHhhhcccccc--cHHHHHHHHHHHHHHHHHHH
Confidence 566666666666664444 45555555555555544444
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.02 E-value=3.3e+02 Score=25.63 Aligned_cols=7 Identities=14% Similarity=0.581 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 009261 506 TIVSFAV 512 (539)
Q Consensus 506 ~~~~~a~ 512 (539)
+++|+++
T Consensus 44 ~~lAlg~ 50 (191)
T PF04156_consen 44 ALLALGV 50 (191)
T ss_pred HHHHHHH
Confidence 3444333
No 95
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=22.27 E-value=2.5e+02 Score=29.59 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 009261 468 AAHKSLNALEVIL 480 (539)
Q Consensus 468 ~Al~~~~~~~~~~ 480 (539)
+=+|.++.++++.
T Consensus 171 kklk~~r~~~kvs 183 (336)
T PF05055_consen 171 KKLKLVRTWRKVS 183 (336)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 96
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=21.13 E-value=7.1e+02 Score=28.82 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=37.1
Q ss_pred CCCCCChhhhhHhHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhcccchhhHHHHHHHHHHHHHHHHH
Q 009261 443 LPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGI---VAATKQNAMSMATRATIVSFAVICFAASK 519 (539)
Q Consensus 443 lp~~~~~~~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~a~l~~~~~~ 519 (539)
-|+..+-|||+- +-..+.+++..+|.+-++++=+ +.+..--....+..+.++++++|++.=.+
T Consensus 570 pP~~nTvEqila--------------lQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~k 635 (683)
T PF04842_consen 570 PPPKNTVEQILA--------------LQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFK 635 (683)
T ss_pred CCCccHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888873 3344556666788888877633 22221001111222344555556666667
Q ss_pred HHHhhhh
Q 009261 520 WLSHFVY 526 (539)
Q Consensus 520 ~l~~~~~ 526 (539)
|+.-++.
T Consensus 636 yil~~v~ 642 (683)
T PF04842_consen 636 YILLFVF 642 (683)
T ss_pred HHHHHHH
Confidence 6655443
No 97
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=21.11 E-value=1.2e+02 Score=26.36 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=36.0
Q ss_pred eEEeeecCCCCCCCCEEEEE---cCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCC-CeEEcccCCe
Q 009261 90 WYPLMPVCDLDKRVPHAKKV---LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQW-GRLQCPYHGW 157 (539)
Q Consensus 90 W~~v~~~~dl~~~~~~~~~l---~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~-g~l~CpyHGW 157 (539)
.|.--++++. .....+++ +|...+... +|+++..+.-||+.-+- ..|.+... ..++|-=|+-
T Consensus 37 ~~~~i~L~~~--~~~~~i~i~~~~g~~~i~i~---~g~vrv~~s~CpdkiCv-~~G~I~~~G~~IVCLPn~l 102 (113)
T PF07009_consen 37 EVKRIPLDKV--NEDKTIEIDGDGGYNTIEIK---DGKVRVIESDCPDKICV-KTGWISRPGQSIVCLPNRL 102 (113)
T ss_dssp EEEEEETTS---BSEEEEEEETTTCEEEEEEE---TTEEEEEEESTSS-HHH-HS-SB-STT-EEEETTTTE
T ss_pred EEEEEECCCC--CCCEEEEEecCCcEEEEEEE---CCEEEEEECCCCCcchh-hCCCcCCCCCEEEEcCCEE
Confidence 4433344443 34556666 455555553 38999999999998764 45777432 4788866554
Done!