Query 009261
Match_columns 539
No_of_seqs 383 out of 2239
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 22:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 2.7E-53 9.4E-58 442.7 27.9 320 85-431 4-337 (349)
2 1z01_A 2-OXO-1,2-dihydroquinol 100.0 3E-44 1E-48 386.0 28.7 340 73-443 25-419 (446)
3 2zyl_A Possible oxidoreductase 100.0 4E-44 1.4E-48 378.3 26.3 309 83-431 19-339 (386)
4 2de6_A Terminal oxygenase comp 100.0 2.1E-43 7.2E-48 373.7 24.2 317 78-432 17-376 (392)
5 3n0q_A Putative aromatic-ring 100.0 2.8E-42 9.4E-47 365.8 21.0 323 74-431 26-399 (409)
6 3vca_A Ring-hydroxylating diox 100.0 1.3E-41 4.4E-46 360.9 23.2 323 74-431 28-402 (412)
7 3gcf_A Terminal oxygenase comp 100.0 4E-40 1.4E-44 343.7 26.0 317 78-431 23-379 (394)
8 3gkq_A Terminal oxygenase comp 100.0 3E-40 1E-44 343.7 24.2 317 79-431 21-376 (389)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 1.6E-35 5.5E-40 319.0 20.4 189 73-263 21-217 (454)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 1E-35 3.5E-40 319.9 14.5 189 73-263 20-216 (447)
11 2b1x_A Naphthalene dioxygenase 100.0 2.2E-34 7.7E-39 311.3 23.5 189 73-263 29-226 (470)
12 3gzx_A Biphenyl dioxygenase su 100.0 2.4E-34 8.4E-39 308.5 7.1 189 73-263 41-244 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 7E-33 2.4E-37 298.8 15.4 187 73-262 39-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 5.9E-26 2E-30 195.5 13.0 100 89-203 3-103 (103)
15 2de6_D Ferredoxin component of 99.9 5.9E-26 2E-30 199.6 10.8 104 88-206 3-108 (115)
16 1fqt_A Rieske-type ferredoxin 99.9 1.4E-25 4.9E-30 196.1 13.1 102 89-205 5-108 (112)
17 2i7f_A Ferredoxin component of 99.9 5.8E-26 2E-30 197.3 10.4 101 89-204 3-105 (108)
18 3dqy_A Toluene 1,2-dioxygenase 99.9 5.4E-26 1.8E-30 196.8 10.1 101 89-204 1-102 (106)
19 2jo6_A Nitrite reductase [NAD( 99.9 1.7E-25 5.9E-30 195.9 12.1 102 88-203 5-112 (113)
20 1vm9_A Toluene-4-monooxygenase 99.9 2.3E-25 7.7E-30 194.5 12.2 102 89-205 1-104 (111)
21 3gce_A Ferredoxin component of 99.9 3.5E-25 1.2E-29 196.4 12.9 102 89-205 10-114 (121)
22 4aiv_A Probable nitrite reduct 99.9 1.1E-25 3.6E-30 199.1 8.9 102 88-203 8-116 (119)
23 3c0d_A Putative nitrite reduct 99.9 2.6E-25 9.1E-30 196.6 11.2 104 88-205 4-112 (119)
24 2jza_A Nitrite reductase [NAD( 99.9 4.8E-25 1.6E-29 198.0 12.4 106 88-206 2-112 (130)
25 3d89_A Rieske domain-containin 99.9 1.9E-25 6.6E-30 206.9 6.2 116 87-205 14-136 (157)
26 1rie_A Rieske iron-sulfur prot 99.8 2.7E-20 9.4E-25 166.7 10.7 98 89-200 5-128 (129)
27 1rfs_A Rieske protein; iron-su 99.8 1.1E-20 3.8E-25 171.3 6.5 101 89-204 21-125 (139)
28 1g8k_B Arsenite oxidase; molyb 99.8 1.9E-19 6.6E-24 162.0 10.5 99 89-201 7-119 (133)
29 3azc_A Cytochrome B6-F complex 99.6 2E-20 6.7E-25 168.0 0.0 98 94-206 21-122 (133)
30 4aay_B AROB; oxidoreductase, r 99.8 8.7E-19 3E-23 164.5 9.0 98 90-201 51-161 (175)
31 2nwf_A Ubiquinol-cytochrome C 99.7 5.3E-17 1.8E-21 147.3 10.6 94 94-200 6-140 (141)
32 1pp9_E Ubiquinol-cytochrome C 99.7 5.1E-17 1.8E-21 155.1 10.3 95 93-200 75-195 (196)
33 3cx5_E Cytochrome B-C1 complex 99.7 8E-17 2.7E-21 152.7 10.8 97 89-200 62-184 (185)
34 2qjy_C Ubiquinol-cytochrome C 99.7 1.2E-16 4.1E-21 151.8 11.5 98 90-200 49-186 (187)
35 1nyk_A Rieske iron-sulfur prot 99.7 8.7E-17 3E-21 149.6 8.8 97 95-205 26-149 (165)
36 1vf5_D Rieske iron-sulfur prot 99.6 5.8E-17 2E-21 153.0 2.3 93 96-203 70-165 (179)
37 1jm1_A Rieske iron-sulfur prot 99.5 3.3E-15 1.1E-19 143.5 2.8 87 105-203 56-167 (204)
38 3hug_B Probable conserved memb 55.5 5.6 0.00019 33.6 2.2 30 452-481 43-72 (108)
39 3fz4_A Putative arsenate reduc 47.2 8.2 0.00028 32.9 2.0 18 459-476 9-26 (120)
40 3f0i_A Arsenate reductase; str 45.1 9.3 0.00032 32.5 2.0 18 459-476 10-27 (119)
41 3gkx_A Putative ARSC family re 43.0 10 0.00035 32.2 2.0 18 459-476 10-27 (120)
42 3rdw_A Putative arsenate reduc 39.9 12 0.0004 31.9 1.9 18 459-476 11-28 (121)
43 3l78_A Regulatory protein SPX; 36.6 15 0.00052 31.1 2.0 18 459-476 6-23 (120)
44 1s3c_A Arsenate reductase; ARS 36.2 15 0.00052 32.1 2.0 18 459-476 8-25 (141)
45 1rw1_A Conserved hypothetical 35.9 16 0.00054 30.6 2.0 17 459-475 6-22 (114)
46 2q1z_B Anti-sigma factor CHRR, 34.6 21 0.00071 33.0 2.8 25 453-477 25-49 (195)
47 2kok_A Arsenate reductase; bru 33.8 18 0.00061 30.5 2.0 18 459-476 11-28 (120)
48 1z3e_A Regulatory protein SPX; 23.4 34 0.0012 29.2 2.0 18 459-476 7-24 (132)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=2.7e-53 Score=442.75 Aligned_cols=320 Identities=20% Similarity=0.312 Sum_probs=246.2
Q ss_pred cccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCc
Q 009261 85 DWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGD 164 (539)
Q Consensus 85 ~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~ 164 (539)
.+++.||+||.++|| +|+++.++++|++|+|||+.+ |+++|++|+|||||++|+.|++++ +.|+||||||+||.+|+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~-G~v~a~~n~CpHrg~~L~~G~~~~-~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPD-GVVAALLDICPHRFAPLSDGILVN-GHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCGGGCEEET-TEEECTTTCCEECTTCC
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCC-CcEEEEeCcCCCCCcCCccCCccc-eEEEECCCCCEEcCCCC
Confidence 367899999999999 899999999999999999875 899999999999999999999975 79999999999999999
Q ss_pred cccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCCCCCCCCCCceEeeEEEEecChhhH
Q 009261 165 CKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVL 244 (539)
Q Consensus 165 c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~ 244 (539)
|+.+|+... ..+.+.++++|||++++|+||||+++++.. + ...+|.++++++++|.......+++|||+.+
T Consensus 81 ~~~~P~~~~-----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~-~---~~~~p~~~~~~~~~~~~~~~~~~~~~nwk~~ 151 (349)
T 3gke_A 81 CVHNPHGNG-----ARPASLNVRSFPVVERDALIWIWPGDPALA-D---PGAIPDFGCRVDPAYRTVGGYGHVDCNYKLL 151 (349)
T ss_dssp EEECCSTTC-----CCCGGGCCCBCCEEEETTEEEECCSCGGGC-C---GGGSCCCGGGGCTTSEEEEEEEEESSCHHHH
T ss_pred ccccCcccc-----ccccccccceeeEEEECCEEEEeeCCCCCC-c---ccccCCccccCCCCCEEEeEEEEEecCHHhH
Confidence 999996221 134568899999999999999999864321 1 1235666677777887665667999999999
Q ss_pred hhhCCCCCCcccccccccccCC---CceEEeccCCe-eEEEEEeecCCCccc--------cc-CCcceeEEeccEEEEEe
Q 009261 245 MENLMDPAHLTYAHYGMMRTRK---PKVMLDREGGR-PIKISFEKIDINGFI--------AK-QDSESAKFLAPCVFVVY 311 (539)
Q Consensus 245 vEN~lD~~H~~~~H~~~~~~~~---p~~~~~r~~~~-~~~~~~~~~~~~gf~--------~~-~~~~~~~F~~P~~~~~~ 311 (539)
+||++|++|++|+|+++++... ...+++.++.. .....+......+|. +. ..+...+|.+||++...
T Consensus 152 ~EN~~D~~H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~ 231 (349)
T 3gke_A 152 VDNLMDLGHAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNF 231 (349)
T ss_dssp HHHHHCGGGHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEE
T ss_pred HHhccccccchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEE
Confidence 9999999999999999998654 23344444332 222333333322221 11 12357899999987765
Q ss_pred eeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccchhccchhHHHHHhhhhhh-hhhHHHHH
Q 009261 312 FDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLIL-DSDLCLLH 390 (539)
Q Consensus 312 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~~~~~prw~~h~~~~~Vl-dqD~~iL~ 390 (539)
....+.+ .....+..+.+++++||+++++||++|.+.|||..+...+.++|. .++++|| +||+.+||
T Consensus 232 ~~~~~~g----------~p~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~~~~~~~~--~~~~~if~~ED~~ile 299 (349)
T 3gke_A 232 IAVAPEG----------TPKEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDPEMDGVLR--SWQAQALVKEDKVVVE 299 (349)
T ss_dssp EEEEETT----------SCGGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCHHHHHHHH--HHHHHHTTTHHHHHHH
T ss_pred EecccCC----------CCCCCceEEEEEEEEecCCCCeEEEEEEEEecCccCchhhhHHHH--HHHhhhhhhhhHHHHH
Confidence 5432221 111234457788999999999999999999999876555545554 4577888 99999999
Q ss_pred HHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHhCC
Q 009261 391 VEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGG 431 (539)
Q Consensus 391 ~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~~g 431 (539)
.||+++...+ ....+++++++|+++++|||||++++..
T Consensus 300 ~Qq~~l~~~~---~~~~~~~~~~~D~~~v~~Rr~l~~l~~~ 337 (349)
T 3gke_A 300 AIERRRAYVE---ANGIRPAMLSCDEAAVRVSREIEKLEQL 337 (349)
T ss_dssp HHHHTHHHHH---HTTCCCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCC---ccccccccccccHHHHHHHHHHHHHHHH
Confidence 9999987642 1233568999999999999999999864
No 2
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=3e-44 Score=386.03 Aligned_cols=340 Identities=16% Similarity=0.192 Sum_probs=230.1
Q ss_pred CCCCccc--ccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCccccc-CCCe
Q 009261 73 TEPETNS--QEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGR 149 (539)
Q Consensus 73 ~~~~~~~--~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~-~~g~ 149 (539)
..++.++ .|.+++|++.||+||.++||++|+++.++++|++||||| . +|+++||+|+|||||++|+.|++. .++.
T Consensus 25 ~~~~~~~~~~e~~~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~ 102 (446)
T 1z01_A 25 KTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-V-NGKVFALKDQCLHRGVRLSEKPTCFTKST 102 (446)
T ss_dssp HHHGGGHHHHHCTTCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-E-TTEEEEEESSCTTTCCCGGGSCCCSSTTE
T ss_pred cCHHHhhhhhhhhhhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-e-CCEEEEEeCcCCCCcCCCCCCccCCCCCE
Confidence 4577788 888999999999999999999899999999999999999 4 489999999999999999999852 3479
Q ss_pred EEcccCCeEEcC-CCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCC----cchhhhhcCCCCCC----
Q 009261 150 LQCPYHGWCFSG-SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAP----QCKDIIKTKKPPHI---- 220 (539)
Q Consensus 150 l~CpyHGW~F~~-~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~----~~~d~~~~~~~p~~---- 220 (539)
|+||||||+||. +|+|+.+|+.+.. ..+.+.+|++|||++++|+||||+++++ +..+ +....++.+
T Consensus 103 i~CpyHgw~fd~~~G~~~~~p~~p~~----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~-l~~~l~~~~~~~~ 177 (446)
T 1z01_A 103 ISCWYHGFTFDLETGKLVTIVANPED----KLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPP-LAHDLPFRFPERS 177 (446)
T ss_dssp EECTTTCEEEETTTCBEEEETTCTTC----TTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCC-GGGGSCCCTTTTT
T ss_pred EEeCCCCeEEeCCCCCccccCCCccc----cCcccCCCcEEEEEEECCEEEEEeCCccccccCCCC-hhHhccchhhhhh
Confidence 999999999996 9999999876532 2345688999999999999999997532 1111 111111111
Q ss_pred -----------CCCCCCCCceEeeEEEEecChhhHhhhCCCCCCcccccccccccCC---C-ce-----------EEecc
Q 009261 221 -----------PELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRK---P-KV-----------MLDRE 274 (539)
Q Consensus 221 -----------p~l~~~~~~~~~~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~---p-~~-----------~~~r~ 274 (539)
+.+.++++......++++|||+.++||++|+||+ ++|+++++... . .+ ....+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (446)
T 1z01_A 178 EQFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLPTSDDCIAVVEDD 256 (446)
T ss_dssp TTSCCTTSCCCCCTTSTTEEEEEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEECSTTSEEEECCS
T ss_pred hccccccccccccccCCCeEEEeEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccccCCCceeEEEec
Confidence 1223344544334578999999999999999999 99999875311 0 01 11111
Q ss_pred C--CeeEEEE-------EeecCCCccc---ccCCcceeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEE
Q 009261 275 G--GRPIKIS-------FEKIDINGFI---AKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFI 342 (539)
Q Consensus 275 ~--~~~~~~~-------~~~~~~~gf~---~~~~~~~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~ 342 (539)
. .+..... .......+.. +...+....+..|+++..... | ...+.++..
T Consensus 257 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~~--------p-----------~~~~~~~~~ 317 (446)
T 1z01_A 257 DGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVENW--------P-----------EEHVVQYEW 317 (446)
T ss_dssp SSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEETC--------S-----------STTCEEEEE
T ss_pred CCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEecc--------C-----------CCCeEEEEE
Confidence 0 1110000 0000000100 001223456778988764321 0 013456788
Q ss_pred EEeCCCCeEEEEEEeccCcccc--hhccc---hhHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchH
Q 009261 343 CAPVSPGNSRVIWAFPRNFQIW--IDKVV---PRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNL 417 (539)
Q Consensus 343 ~~Pvspg~tr~~~~~~r~f~~~--~~~~~---prw~~h~~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~ 417 (539)
++|+++++|++++.+.+++... ...+. ..++.......|+.||+.+++.||+.+... ..|. .+++.++|++
T Consensus 318 ~~Pi~~~~t~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~--~~~~--~~~l~~~D~~ 393 (446)
T 1z01_A 318 YVPITDDTHEYWEILVRVCPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDG--TGWD--DEQLVATDIS 393 (446)
T ss_dssp EEESSSSEEEEEEEEEEECCSHHHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTS--HHHH--HCCCCGGGHH
T ss_pred EEECCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccc--cccc--cccCchhhHH
Confidence 9999999999998888776421 11111 112222233457899999999999987543 2232 2467789999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCC
Q 009261 418 VVGFRMWLKKYSGGQFNWGGKFDATL 443 (539)
Q Consensus 418 VvafRrWl~k~~~g~p~w~~~~~~~l 443 (539)
+++||||+++++.+.-.+.....+++
T Consensus 394 i~~~Rr~l~~~~~~~~~~~~~~~~~~ 419 (446)
T 1z01_A 394 PITWRKLASRWNRGIAKPGRGVAGAV 419 (446)
T ss_dssp HHHHHHHHHHHCSCBCCCCCSSTTSS
T ss_pred HHHHHHHHHHHHhhccCcccccCccc
Confidence 99999999999988655444444433
No 3
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4e-44 Score=378.31 Aligned_cols=309 Identities=20% Similarity=0.349 Sum_probs=217.9
Q ss_pred cccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCC
Q 009261 83 KFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGS 162 (539)
Q Consensus 83 ~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~ 162 (539)
..+|.+.||+||.++||++|+++.++++|++|||||+.+ |+++||+|+|||||++|+.|++++ +.|+||||||+||.+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~-G~v~a~~n~CpHrga~L~~g~~~~-~~i~CpyHgw~f~~~ 96 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSH-GDLKVLDGYCRHMGGDLSEGTVKG-DEVACPFHDWRWGGD 96 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTT-SCEEEEESBCTTTCCBGGGSEEET-TEEECTTTCCEEETT
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCC-CCEEEEcCcCCCCCCCCCCCcccC-CEEEeCCCCCEECCC
Confidence 356788999999999999999999999999999999875 899999999999999999999875 799999999999999
Q ss_pred CccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCCCCCCCCCCceE-eeEEEEe-cC
Q 009261 163 GDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKM-FGSRDVP-YG 240 (539)
Q Consensus 163 G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~~-~~~~~~~-~~ 240 (539)
|+|+.+|+... .+++.++++|||++++|+||||++++.... .....+|.+++++.++|... ....+++ ||
T Consensus 97 G~~~~~P~~~~------~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~n 168 (386)
T 2zyl_A 97 GRCKLVPYARR------TPRMARTRSWTTDVRSGLLFVWHDHEGNPP--DPAVRIPEIPEAASDEWTDWRWNRILIEGSN 168 (386)
T ss_dssp SBEEECTTCSS------CCTTCBCCEECEEEETTEEEEEECTTCCCC--CGGGCCCCCGGGGCTTBCCCEEEEEEEESSC
T ss_pred CCccccCcccc------cCcccCcceEeEEEECCEEEEEECCccCCC--cccccCcccccccCCCceEEEEEEEEEcCcC
Confidence 99999997532 234678999999999999999997542211 11234567777777777643 4567889 99
Q ss_pred hhhHhhhCCCCCCcccccccccccCCCceEEeccCCeeEEEEEe-e-cCCC--c-ccccC-CcceeEEeccEEEEEeeee
Q 009261 241 YEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFE-K-IDIN--G-FIAKQ-DSESAKFLAPCVFVVYFDL 314 (539)
Q Consensus 241 ~~~~vEN~lD~~H~~~~H~~~~~~~~p~~~~~r~~~~~~~~~~~-~-~~~~--g-f~~~~-~~~~~~F~~P~~~~~~~~~ 314 (539)
||.++||++|++|++|+|+++.... ....++.....+... . .... + ..+.. ......|..|+++.+....
T Consensus 169 wk~~~EN~~D~~H~~~~H~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~ 244 (386)
T 2zyl_A 169 CRDIIDNVTDMAHFFYIHFGLPTYF----KNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHN 244 (386)
T ss_dssp GGGGGGGGGCSTHHHHTTCEEEEEE----EEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEE
T ss_pred HHhHhhhcccccchhhhCcCccccc----cccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeee
Confidence 9999999999999999999875321 011111111111111 1 1100 0 00111 1234678899877654321
Q ss_pred cccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccchh----ccchhHHHHHhhhhhhhhhHHHHH
Q 009261 315 LENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWID----KVVPRWIFHIGQNLILDSDLCLLH 390 (539)
Q Consensus 315 ~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~~----~~~prw~~h~~~~~VldqD~~iL~ 390 (539)
... +......+++.++|+++++|++++.+.++...... ....+.+ ......+++||..|++
T Consensus 245 ~~~--------------g~~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vf~ED~~I~e 309 (386)
T 2zyl_A 245 RYG--------------NYKSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVF-TEGVSKGFLQDVEIWK 309 (386)
T ss_dssp EET--------------TEEEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred ccC--------------CcceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHH-HHHHHHhhHHHHHHHH
Confidence 100 11123456777899999999999877655421111 1111222 2345678999999999
Q ss_pred HHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHhCC
Q 009261 391 VEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGG 431 (539)
Q Consensus 391 ~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~~g 431 (539)
.|++.. . .++.+.|+++++||||+++++..
T Consensus 310 ~q~~~~--------~---p~~~~~D~~~~~fRrw~~~~~~~ 339 (386)
T 2zyl_A 310 HKTRID--------N---PLLVEEDGAVYQLRRWYEQFYVD 339 (386)
T ss_dssp TCCCCS--------S---CCCCGGGCSHHHHHHHHHGGGSC
T ss_pred hccccc--------C---CccCcccHHHHHHHHHHHHhCCc
Confidence 865321 1 13557899999999999999863
No 4
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=2.1e-43 Score=373.72 Aligned_cols=317 Identities=16% Similarity=0.252 Sum_probs=217.0
Q ss_pred ccccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCccccc-CCCeEEcccCC
Q 009261 78 NSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCPYHG 156 (539)
Q Consensus 78 ~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~-~~g~l~CpyHG 156 (539)
.-.|.+.+|++.||+||.++||++|+++.++++|++|||||+ +|+++|++|+|||||++|+.|++. .++.|+|||||
T Consensus 17 ~~~e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~--~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHg 94 (392)
T 2de6_A 17 PYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI--DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHA 94 (392)
T ss_dssp HHHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTC
T ss_pred ccchhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCC
Confidence 345678899999999999999998999999999999999995 489999999999999999999874 24799999999
Q ss_pred eEEcC-CCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCC-CCCCCCCCceEeeE
Q 009261 157 WCFSG-SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHI-PELDDPSFTKMFGS 234 (539)
Q Consensus 157 W~F~~-~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~-p~l~~~~~~~~~~~ 234 (539)
|+||. +|+|+.+|+.+.. ..+++.+|++|||++++|+||||++++.. .++ ++.+ +++.++++......
T Consensus 95 w~f~~~~G~~~~~p~~p~~----~~~~~~~l~~~~v~~~~G~v~v~~~~~~~-~~l-----~~~l~~~~~~~~~~~~~~~ 164 (392)
T 2de6_A 95 WTYRWEDGVLCDILTNPTS----AQIGRQKLKTYPVQEAKGCVFIYLGDGDP-PPL-----ARDTPPNFLDDDMEILGKN 164 (392)
T ss_dssp EEEETTTCBEEEETTCTTC----TTTTSCBCCBCCEEEETTEEEEEESSSSC-CCG-----GGGSCTTTTCTTEEEEEEE
T ss_pred CEEcCCCCccccccCCccc----cccccCCCceEeEEEECCEEEEEeCCCCC-CCh-----hHhccccccCCCeEEEEEE
Confidence 99996 9999999976532 23456889999999999999999974221 111 0112 34555666554456
Q ss_pred EEEecChhhHhhhCCCCCCcccccccccccCCC-----------------ceEEecc---CCeeEEEEEeecC-------
Q 009261 235 RDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKP-----------------KVMLDRE---GGRPIKISFEKID------- 287 (539)
Q Consensus 235 ~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~p-----------------~~~~~r~---~~~~~~~~~~~~~------- 287 (539)
.+++|||+.++||++|++|+ |+|+++++.... .+..+.. ..+.... .....
T Consensus 165 ~~~~~nwk~~~EN~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~-~~~~~~p~~~~~ 242 (392)
T 2de6_A 165 QIIKSNWRLAVENGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDL-IGEHGVPVFEGT 242 (392)
T ss_dssp EEESSCHHHHHHHHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEEC-GGGTCEEECEEE
T ss_pred EEEecChHhhhHhcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeee-cCCccccccccc
Confidence 78999999999999999999 999998743110 0011110 0000000 00000
Q ss_pred CCcc------cccC-CcceeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccC
Q 009261 288 INGF------IAKQ-DSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRN 360 (539)
Q Consensus 288 ~~gf------~~~~-~~~~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~ 360 (539)
..+. .+.. ......+..|+.+.... .+ ...+.++..++|+++++|++++.+.|+
T Consensus 243 ~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~--~p-----------------~~~~~~~~~~~Pi~~~~t~~~~~~~~~ 303 (392)
T 2de6_A 243 IGGEVVREGAYGEKIVANDISIWLPGVLKVNP--FP-----------------NPDMMQFEWYVPIDENTHYYFQTLGKP 303 (392)
T ss_dssp ETTEEEEECEECSBCCCCEEEEETTTEEEEES--CS-----------------STTCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cccceeeccccCCcccceeEEEecccceeccc--cC-----------------CCCEEEEEEEeecCCCcEEEEEEEecC
Confidence 0000 0000 12234555777654321 01 012345677899999999999988887
Q ss_pred cccchh------ccchhHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHhCCC
Q 009261 361 FQIWID------KVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQ 432 (539)
Q Consensus 361 f~~~~~------~~~prw~~h~~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~~g~ 432 (539)
+..... .+...|. ......+++||+.+++.||+.+... ..|. .+++.++|+++++||||+++++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~qD~~i~e~qq~~~~~~--~~~~--~e~~~~~D~~~~~~Rr~l~~~~~~~ 376 (392)
T 2de6_A 304 CANDEERKKYEQEFESKWK-PMALEGFNNDDIWAREAMVDFYADD--KGWV--NEILFESDEAIVAWRKLASEHNQGI 376 (392)
T ss_dssp CSSHHHHHHHHHHHHHTHH-HHTTTTTTHHHHHHHHHTHHHHHTS--THHH--HCCCCGGGHHHHHHHHHHHHHCSCB
T ss_pred CCCHHHHHHHHHHHHHHHH-HhhccCCChhhHHHHHhhhhhhhcc--ccCc--cceecchhHHHHHHHHHHHHHhhhh
Confidence 643111 0011111 1123457899999999999977542 2242 2456689999999999999998763
No 5
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=2.8e-42 Score=365.76 Aligned_cols=323 Identities=18% Similarity=0.270 Sum_probs=225.9
Q ss_pred CCCcccccccccccCCeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCc-ccccCCCeEE
Q 009261 74 EPETNSQEEKFDWFSQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSE-GRIDQWGRLQ 151 (539)
Q Consensus 74 ~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~-G~v~~~g~l~ 151 (539)
+++.++.|.+.+|++.|++||+++||++ |+++.++++|++|+|+|+.+ |+++||.|+|||||++|+. |.+.+ +.|+
T Consensus 26 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~d-G~v~A~~n~C~Hrga~L~~~g~~~~-~~i~ 103 (409)
T 3n0q_A 26 DAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGAD-NVIRAFHNACRHRGSVICKAKKGNN-PKLV 103 (409)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEEC-SSEE
T ss_pred CHHHHHHHHHHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCC-CCEEeecCcCCcCcCCccCcCccCC-CEEE
Confidence 6888999999999999999999999984 89999999999999999875 8999999999999999996 77765 6899
Q ss_pred cccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCc-chhhhhcCCCCCCCCCCCCCCce
Q 009261 152 CPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQ-CKDIIKTKKPPHIPELDDPSFTK 230 (539)
Q Consensus 152 CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~-~~d~~~~~~~p~~p~l~~~~~~~ 230 (539)
||||||+||.+|+|+.+|..+. ..++++.+|++|||++++|+|||++++++. +.+.+.. ..+.+..++...+..
T Consensus 104 CpyHgw~fd~dG~~~~~P~~~~----~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~l~~~l~~-~~~~l~~~~~~~~~~ 178 (409)
T 3n0q_A 104 CPYHQWTYELDGRLLWARDMGP----DFEPSRHGLKTVHCRELAGLIYICLADEAPDFERFAEV-ARPYLEVHDLSNAKV 178 (409)
T ss_dssp CTTTCCEECTTSCEEECTTCCT----TCCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHH-HHHHHHTTCGGGEEE
T ss_pred ECCCCCEEeCCCCcccCCcCCc----ccCcccCCCceEEEEEECCEEEEEeCCCCCChHHhhhh-hhhhhccccCCCeEE
Confidence 9999999999999999997542 134677899999999999999999986542 2222110 011222222233333
Q ss_pred E-eeEEEEecChhhHhhhCCCCCCcccccccccccCCC--ce---EE-----------ec--cCCee----------EEE
Q 009261 231 M-FGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKP--KV---ML-----------DR--EGGRP----------IKI 281 (539)
Q Consensus 231 ~-~~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~p--~~---~~-----------~r--~~~~~----------~~~ 281 (539)
. ....+++||||.++||++|+||++++|+++++.-.. ++ .. .+ ..+.+ .+.
T Consensus 179 ~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 258 (409)
T 3n0q_A 179 AHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDGQFRV 258 (409)
T ss_dssp EEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHTTCCCCCEECTTSSEEE
T ss_pred eeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhhhccCCcceeecccccceee
Confidence 2 345788999999999999999999999999763210 00 00 00 00111 111
Q ss_pred EEeec-------CCCc---c-------cccCCcceeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEE
Q 009261 282 SFEKI-------DING---F-------IAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICA 344 (539)
Q Consensus 282 ~~~~~-------~~~g---f-------~~~~~~~~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~ 344 (539)
..... ..+| + ..........++.|+++...+ ..++.++.++
T Consensus 259 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~----------------------pd~~~~~~~~ 316 (409)
T 3n0q_A 259 ARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL----------------------SDHSIVFRVT 316 (409)
T ss_dssp EEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC----------------------SSCEEEEEEE
T ss_pred eeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC----------------------CCEEEEEEEE
Confidence 11100 0111 0 001122355678999887542 2457788899
Q ss_pred eCCCCeEEEEEEecc--CcccchhccchhHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHH
Q 009261 345 PVSPGNSRVIWAFPR--NFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFR 422 (539)
Q Consensus 345 Pvspg~tr~~~~~~r--~f~~~~~~~~prw~~h~~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafR 422 (539)
|++|++|++...+.+ +.....+..+.++ ..+.+.+.+||..+++..|+++.+.. +..+.|.| ..+.++..|.
T Consensus 317 P~~p~~t~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~ED~~l~e~~Q~G~~s~~---y~~G~~s~-~~E~~v~~F~ 390 (409)
T 3n0q_A 317 PISPTETEVTTKWLVHKDAVEGVDYDLQRL--TEVWIATNDEDREVVEFNQMGINSPA---YEPGPYSP-TQESGVLQFV 390 (409)
T ss_dssp EEETTEEEEEEEEEEETTCCBTTTBCHHHH--HHHHHHHHHHHHHHHHHHHHHHTSTT---CCCCBCCT-TTSHHHHHHH
T ss_pred ECCCCeEEEEEEEEEcCcccccchhhHHHH--HHHHHHHHHHHHHHHHHHhhhhcCCC---CCCCCCCC-CccHhHHHHH
Confidence 999999999765433 2211111111111 13346789999999999999998765 34455543 4799999999
Q ss_pred HHHHHHhCC
Q 009261 423 MWLKKYSGG 431 (539)
Q Consensus 423 rWl~k~~~g 431 (539)
+|+.+.+..
T Consensus 391 ~w~~~~l~~ 399 (409)
T 3n0q_A 391 EWYLSTLKR 399 (409)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 6
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=1.3e-41 Score=360.92 Aligned_cols=323 Identities=18% Similarity=0.294 Sum_probs=225.7
Q ss_pred CCCcccccccccccCCeEEeeecCCCC-CCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCC-cccccCCCeEE
Q 009261 74 EPETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLS-EGRIDQWGRLQ 151 (539)
Q Consensus 74 ~~~~~~~e~~~~~~~~W~~v~~~~dl~-~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs-~G~v~~~g~l~ 151 (539)
.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+.+ |+++||+|+|||||++|+ +|.+.+ +.|+
T Consensus 28 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~d-G~v~A~~n~CpHrga~L~~~g~~~~-~~i~ 105 (412)
T 3vca_A 28 SPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRD-GEVRAFHNSCRHRGSLICKARQGQV-AKLV 105 (412)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCSCCSSEEEC-SSEE
T ss_pred CHHHHHHHHHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCC-CCEEEecccCCCCCCEeecccccCC-CEEE
Confidence 578899999999999999999999998 489999999999999999875 899999999999999998 788775 7899
Q ss_pred cccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCc-chhhhhcCCCCCCCCCCCCCCce
Q 009261 152 CPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQ-CKDIIKTKKPPHIPELDDPSFTK 230 (539)
Q Consensus 152 CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~-~~d~~~~~~~p~~p~l~~~~~~~ 230 (539)
||||||+||.+|+|+.+|.... ..++++.+|++|||++++|+|||++++++. +.+.+.. ..+.+..++.+++..
T Consensus 106 CPyHgw~fdldG~~~~~P~~~~----~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~-~~~~l~~~~~~~~~~ 180 (412)
T 3vca_A 106 CPYHQWTYELDGKLIWANDMGP----DFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQL-ARPYLEVHDLKDAKV 180 (412)
T ss_dssp CTTTCCEECTTSCEEECTTCCT----TCCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHH-HHHHHHTTCGGGEEE
T ss_pred cCCCCCEEcCCCccccCCcccc----ccCcccCCCcEEEEEEECCEEEEEecCCCCCHHHHhhh-hHHhhccccCCCeEE
Confidence 9999999999999999997542 134567899999999999999999986532 2222111 011122222233332
Q ss_pred -EeeEEEEecChhhHhhhCCCCCCcccccccccccCC--Cc---eEE------------ec--cCC----------eeEE
Q 009261 231 -MFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRK--PK---VML------------DR--EGG----------RPIK 280 (539)
Q Consensus 231 -~~~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~--p~---~~~------------~r--~~~----------~~~~ 280 (539)
.....+++||||.++||++|+||++++|+++++.-. ++ +.. .+ ..+ +...
T Consensus 181 ~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~ 260 (412)
T 3vca_A 181 AFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYR 260 (412)
T ss_dssp EEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHHHHHTTCCCSCEECTTSSEE
T ss_pred eEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhhhhccCCcccccccccCcee
Confidence 234578999999999999999999999999875321 00 000 00 000 0111
Q ss_pred EEEeecC-------CCc---c---cc----cCCcceeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEE
Q 009261 281 ISFEKID-------ING---F---IA----KQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFIC 343 (539)
Q Consensus 281 ~~~~~~~-------~~g---f---~~----~~~~~~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~ 343 (539)
....... .+| . .+ ........++.|+++...+ ..++.++.+
T Consensus 261 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~----------------------pd~~~~~~~ 318 (412)
T 3vca_A 261 LARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL----------------------PDHSLTFRV 318 (412)
T ss_dssp EEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC----------------------SSCEEEEEE
T ss_pred eeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC----------------------CCEEEEEEE
Confidence 1111100 111 0 00 1122355678999887542 245678889
Q ss_pred EeCCCCeEEEEEEecc--CcccchhccchhHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHH
Q 009261 344 APVSPGNSRVIWAFPR--NFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGF 421 (539)
Q Consensus 344 ~Pvspg~tr~~~~~~r--~f~~~~~~~~prw~~h~~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~Vvaf 421 (539)
+|++|++|++...+.+ +.....+..+.++ ....+.+.+||..+++..|+++.+.. +..+.|.| ..+.++..|
T Consensus 319 ~P~~~~~t~v~~~~~~~~d~~~~~d~~~~~~--~~~~~~~~~ED~~l~e~~Q~G~~S~~---y~~G~~sp-~~E~~v~~F 392 (412)
T 3vca_A 319 MPISPTETEVTTTWLVHKDAVEGVDYDLKRL--TEVWIATNDEDREIVETNQQGILSPA---YVPGPYSP-GQESGVMQF 392 (412)
T ss_dssp EEEETTEEEEEEEEEEETTCCBTTTBCHHHH--HHHHHHHHHHHHHHHHHHHHHHTSTT---CCCCBCCT-TTCHHHHHH
T ss_pred EECCCCeEEEEEEEEEccccccCccHHHHHH--HHHHHHHHHHHHHHHHHhhhhhcCCC---CCCCCCCC-CcchhHHHH
Confidence 9999999999755433 3211111111121 13356789999999999999998765 34456644 459999999
Q ss_pred HHHHHHHhCC
Q 009261 422 RMWLKKYSGG 431 (539)
Q Consensus 422 RrWl~k~~~g 431 (539)
.+|+.+.++.
T Consensus 393 ~~w~~~~l~~ 402 (412)
T 3vca_A 393 VDWYAASLER 402 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 7
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=4e-40 Score=343.71 Aligned_cols=317 Identities=18% Similarity=0.232 Sum_probs=224.9
Q ss_pred ccccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCccccc-CCCeEEcccCC
Q 009261 78 NSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCPYHG 156 (539)
Q Consensus 78 ~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~-~~g~l~CpyHG 156 (539)
.-.|.+++|++.||+||.++||++|+++.++++|++|+|+| . +|+++|++|+|||||++|+.|.+. .++.|+|||||
T Consensus 23 ~yLE~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~-dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHG 100 (394)
T 3gcf_A 23 RYLEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-A-KGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHG 100 (394)
T ss_dssp HHHHCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-E-TTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTC
T ss_pred hhhhhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-e-CCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCC
Confidence 34577899999999999999999999999999999999999 4 489999999999999999999742 34799999999
Q ss_pred eEEcC-CCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCCCCCCCCCCceEeeEE
Q 009261 157 WCFSG-SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSR 235 (539)
Q Consensus 157 W~F~~-~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~~~~~~ 235 (539)
|+||. +|+|+.+|+.+.. ..+.+.+|++|||++++|+|||++++.+. .++ .... .+.+.+.++.......
T Consensus 101 W~Fdl~dG~cv~iP~~p~~----~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL-~e~L---~~~~~d~~~~~~~~~~ 171 (394)
T 3gcf_A 101 WTYDLDDGRLVDVLTSPGS----PVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HAL-SEDL---PPGFLDEDTHLLGIRR 171 (394)
T ss_dssp EEEETTTCBEEEETTSTTC----TTTTSCBCCEECEEEETTEEEEEESSSCC-CCG-GGGS---CTTTTCTTEEEEEEEE
T ss_pred cEEECCCCceeccCCCccc----ccccccCceEEEEEEECCcEEEecCCCCC-CCc-hhhc---chhhcCCceEEEeEEE
Confidence 99996 9999999976532 23456789999999999999999974321 111 1111 1234455665555567
Q ss_pred EEecChhhHhhhCCCCCCcccccccccccCC---C-ceEEeccCCeeEEEEEeecCCCccc-------------------
Q 009261 236 DVPYGYEVLMENLMDPAHLTYAHYGMMRTRK---P-KVMLDREGGRPIKISFEKIDINGFI------------------- 292 (539)
Q Consensus 236 ~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~---p-~~~~~r~~~~~~~~~~~~~~~~gf~------------------- 292 (539)
+++|||+.++||++|+||+ |+|+++++... + .+.+...+...+... ++..+.|..
T Consensus 172 ~i~~NWK~~~EN~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kg~~~~~~~~~~pv~~~~~~~~~ 249 (394)
T 3gcf_A 172 TVQSNWRLGVENGFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVY-DENWPKGVLDRLSENYMPVFEATLDGET 249 (394)
T ss_dssp EESSCHHHHHHHHSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEE-CSSSSCEEEECHHHHEEEECEEEETTEE
T ss_pred EEecCchhhHhhccccchh-hCchhhhcccccccccCcceeEcCCceEEec-cCCCCcchhhhhhccccccccccccccc
Confidence 8999999999999999999 99999986421 1 111111111111111 211122210
Q ss_pred -------cc--CCcceeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCccc
Q 009261 293 -------AK--QDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQI 363 (539)
Q Consensus 293 -------~~--~~~~~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~ 363 (539)
+. .......+..|++.+.. .+ + ..+++++...+|+++++++++-.+.+.+..
T Consensus 250 ~~~~~~~~~~~~~~~~~s~~lP~v~~v~-~~-p-----------------~~~~~~~~~~vPid~~~~~~~~~~~~~~~~ 310 (394)
T 3gcf_A 250 VLSAELTGEEKKVAAQVSVWLPGVLKVD-PF-P-----------------DPTLIQYEFYVPISETQHEYFQVLQRKVEG 310 (394)
T ss_dssp EEECCCCSSCBCCCSEEEEETTTEEEEE-SC-S-----------------STTCEEEEEEEESSSSCEEEEEEEEEECSS
T ss_pred cccccccCcccccceeEEEEecCeeEec-cC-C-----------------CCCeEEEEEEeeccCCeEEEEEEEEEECCC
Confidence 11 11235677788877654 11 1 125667777899999999999777655532
Q ss_pred c------hhccchhHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHhCC
Q 009261 364 W------IDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGG 431 (539)
Q Consensus 364 ~------~~~~~prw~~h~~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~~g 431 (539)
. ..+.-.+|.. ...+.++++|...-+++|...+.. ..|.+ +.....|..++++||...++..|
T Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~f~~~d~~ar~~~~~~y~~~--~g~~~--e~l~~~d~~~~~~r~~~~~~~~~ 379 (394)
T 3gcf_A 311 PEDVKTFEVEFEERWRD-DALHGFNDDDVWAREAQQEFYGER--DGWSK--EQLFPPDMCIVKWRTLASERGRG 379 (394)
T ss_dssp HHHHHHHHHHHHHTHHH-HTTTTTTHHHHHHHHHHHHHHHHS--CHHHH--CCCCGGGHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHhHH-HhhcccchhhHHHHHHHHHhhccc--CCCCh--hhccCcchhHHHHHHHHHHhccc
Confidence 2 1122234443 235778999999999999988764 34653 45667999999999999999765
No 8
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=3e-40 Score=343.72 Aligned_cols=317 Identities=18% Similarity=0.262 Sum_probs=224.9
Q ss_pred cccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCccccc-CCCeEEcccCCe
Q 009261 79 SQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCPYHGW 157 (539)
Q Consensus 79 ~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~-~~g~l~CpyHGW 157 (539)
-.|.+++|++.||+||.++||++|+++.++++|++|+|+| . +|+++|++|+|||||++|+.|.+. .++.|+||||||
T Consensus 21 ylE~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~-dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW 98 (389)
T 3gkq_A 21 YIDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-V-DGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGW 98 (389)
T ss_dssp HHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-E-TTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCE
T ss_pred hhhhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-e-CCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCC
Confidence 3578899999999999999999999999999999999999 4 489999999999999999999742 247999999999
Q ss_pred EEcC-CCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCCCCCCCCCCceEeeEEE
Q 009261 158 CFSG-SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRD 236 (539)
Q Consensus 158 ~F~~-~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~~~~~~~ 236 (539)
+||. +|+|+.+|..+.. ..+.+.+|++|||++++|+|||++++.+. .++ .... .+.+.+.++.......+
T Consensus 99 ~Fdl~dG~cv~iP~~P~~----~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL-~e~l---~~~~~~~~~~~~~~~~~ 169 (389)
T 3gkq_A 99 TYRWDNGKLVDILTNPTS----VQIGRHALKTYPVREEKGLVFLFVGDQEP-HDL-AEDV---PPGFLDADLAVHGQHRV 169 (389)
T ss_dssp EEETTTCBEEEETTCTTC----TTTTSCBCCBCCEEEETTEEEEEESSSCC-CCG-GGGS---CTTTTCTTEEEEEEEEE
T ss_pred EEECCCCCeecccCCccc----ccccccCCcEEEEEEECCeEEEecCCCCC-CCc-hhhc---chhccCCceEEEeEEEE
Confidence 9996 9999999976532 23456789999999999999999964221 111 1111 12344556655455678
Q ss_pred EecChhhHhhhCCCCCCcccccccccccCC---C-ceEEecc-CCeeEEEEEeecCCCcccc------------------
Q 009261 237 VPYGYEVLMENLMDPAHLTYAHYGMMRTRK---P-KVMLDRE-GGRPIKISFEKIDINGFIA------------------ 293 (539)
Q Consensus 237 ~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~---p-~~~~~r~-~~~~~~~~~~~~~~~gf~~------------------ 293 (539)
++||||.++||++|+||+ ++|+++++... . ....... .+.......++..+.|+..
T Consensus 170 i~~NWK~~~EN~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~ 248 (389)
T 3gkq_A 170 VDANWRMGVENGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQP 248 (389)
T ss_dssp ESSCHHHHHHHHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEE
T ss_pred EecCchhhHHhcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcc
Confidence 999999999999999999 99999986321 1 1111111 1111112222222223111
Q ss_pred -------c-CCcceeEEeccEEEEEeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccch
Q 009261 294 -------K-QDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWI 365 (539)
Q Consensus 294 -------~-~~~~~~~F~~P~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~ 365 (539)
. .......+..|++..... + + ..+++++...+|+++++++++-.+.+.+....
T Consensus 249 ~~~~~~~~~~~~~~~s~~lP~v~~v~~-~-~-----------------~~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~~ 309 (389)
T 3gkq_A 249 AIQGHMGSKMVAISISVWLPGVLKVDP-F-P-----------------DPTLTQFEWYVPIDEGHHLYLQMLGRRVGSEE 309 (389)
T ss_dssp EEECBCCSBCCCCEEEEETTTEEEEES-C-S-----------------STTCEEEEEEEEEETTEEEEEEEEEEECSSHH
T ss_pred cccCCCCCcccceeEEEEecCeeEecc-C-C-----------------CCCeEEEEEEeeccCCeEEEEEEEEEEcCCHH
Confidence 1 012456778888877541 1 1 12566777789999999999977765553221
Q ss_pred ------hccchhHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHhCC
Q 009261 366 ------DKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGG 431 (539)
Q Consensus 366 ------~~~~prw~~h~~~~~VldqD~~iL~~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~~g 431 (539)
.++-.+|.. ...+.++++|...-+++|...+.. ..|.+ +.....|..++++||...++..|
T Consensus 310 ~~~~~~~~~~~~~~~-~~~~~f~~~d~~ar~~~~~~y~~~--~g~~~--e~l~~~d~~~~~wr~~~~~~~~~ 376 (389)
T 3gkq_A 310 EARSFEAEFREKWVE-LALNGFNDDDILARRSMEPFYADD--RGWRE--EVLFESDRAIIEWRRLASQYNRG 376 (389)
T ss_dssp HHHHHHHHHHHTHHH-HTTTTTTHHHHHHHHHHHHHHHTS--HHHHH--CCCCGGGHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHH-HhhccccchhHHHHHHHHHhhccC--CCCCh--hhccCcchhHHHHHHHHHHhccc
Confidence 122224433 234678999999999999888654 34653 45667999999999999999765
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=1.6e-35 Score=319.00 Aligned_cols=189 Identities=15% Similarity=0.189 Sum_probs=148.0
Q ss_pred CCCCcccccccccccCCeEEeeecCCCC-CCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEE
Q 009261 73 TEPETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 151 (539)
Q Consensus 73 ~~~~~~~~e~~~~~~~~W~~v~~~~dl~-~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~ 151 (539)
+.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|||+.+ |+++||+|+|||||++|+.|.+++++.|+
T Consensus 21 ~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~-G~v~a~~n~CpHrga~L~~g~~g~~~~i~ 99 (454)
T 2gbw_A 21 WDEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSD-GTFRAFINSCSHRGNQICHADSGNAKAFV 99 (454)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCSCCCSEEECSEEE
T ss_pred CCHHHHHHHHHHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCC-CCEEEEeccCCCCCCCCcccccCCcCEEE
Confidence 4688889999999999999999999998 588999999999999999875 89999999999999999998874346899
Q ss_pred cccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCC-cchhhhhcCCCCCCCC-CCC--CC
Q 009261 152 CPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAP-QCKDIIKTKKPPHIPE-LDD--PS 227 (539)
Q Consensus 152 CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~-~~~d~~~~~~~p~~p~-l~~--~~ 227 (539)
||||||+||.+|+|+.+|......+...++.+.+|++|+|++++|+|||++++++ ...+.+.. ..+.+.. ++. .+
T Consensus 100 CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~~~~~l~~-~~~~l~~~~~~~~~~ 178 (454)
T 2gbw_A 100 CNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGE-FRYYLDTIWEGAGGG 178 (454)
T ss_dssp CTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCCCHHHHHGG-GHHHHHHHHTTTTTC
T ss_pred eCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCCCHHHHhhh-hHHHHHHHHhcCCCc
Confidence 9999999999999999997653211123456688999999999999999998653 22221111 0011110 121 23
Q ss_pred CceE--eeEEEEecChhhHhhhC-CCCCCcccccccccc
Q 009261 228 FTKM--FGSRDVPYGYEVLMENL-MDPAHLTYAHYGMMR 263 (539)
Q Consensus 228 ~~~~--~~~~~~~~~~~~~vEN~-lD~~H~~~~H~~~~~ 263 (539)
+... ...++++||||.++||+ +|+||++++|+.+++
T Consensus 179 ~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 179 MELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp EEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred eEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 3332 34578999999999999 799999999976654
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=1e-35 Score=319.91 Aligned_cols=189 Identities=18% Similarity=0.211 Sum_probs=147.3
Q ss_pred CCCCcccccccccccCCeEEeeecCCCC-CCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEE
Q 009261 73 TEPETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 151 (539)
Q Consensus 73 ~~~~~~~~e~~~~~~~~W~~v~~~~dl~-~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~ 151 (539)
+.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+.+ |+++||.|+|||||++|+.|.+++++.|+
T Consensus 20 ~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~-G~v~a~~n~CpHrga~L~~g~~g~~~~l~ 98 (447)
T 2bmo_A 20 GDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQND-GSVRAFLNVCRHRGKTLVHAEAGNAKGFV 98 (447)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESBCTTTCCBCCCSSEEECSEEE
T ss_pred CCHHHHHHHHHHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCC-CCEEEEeccCcCCCCCccccccCCcCeEE
Confidence 4688889999999999999999999998 588899999999999999875 89999999999999999999875447999
Q ss_pred cccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeee-EEEeCCeEEEcCCCCCc-chhhhhcCCCCCCCC-CC-CCC
Q 009261 152 CPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYP-SAVQNGILWFWPDIAPQ-CKDIIKTKKPPHIPE-LD-DPS 227 (539)
Q Consensus 152 CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~yp-v~~~~g~vwV~~~~~~~-~~d~~~~~~~p~~p~-l~-~~~ 227 (539)
||||||+||.+|+|+.+|..+...+...++.+.+|++|| |++++|+|||++++++. ..+.+.. ..+.+.. ++ ..+
T Consensus 99 CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~ 177 (447)
T 2bmo_A 99 CGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGD-AAWYLEPTFKYSGG 177 (447)
T ss_dssp CTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCCCHHHHHTT-HHHHHHHHHTTTSC
T ss_pred CCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCCCHHHHhcc-HHHHHHHHhccCCC
Confidence 999999999999999999753211111345668899998 99999999999986532 2221110 0000000 11 223
Q ss_pred CceE--eeEEEEecChhhHhhhC-CCCCCcccccccccc
Q 009261 228 FTKM--FGSRDVPYGYEVLMENL-MDPAHLTYAHYGMMR 263 (539)
Q Consensus 228 ~~~~--~~~~~~~~~~~~~vEN~-lD~~H~~~~H~~~~~ 263 (539)
+... ...++++||||.++||+ +|+||++++|+++++
T Consensus 178 ~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~ 216 (447)
T 2bmo_A 178 LELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALR 216 (447)
T ss_dssp EEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred eEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhh
Confidence 4333 34578999999999999 799999999987765
No 11
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=2.2e-34 Score=311.28 Aligned_cols=189 Identities=17% Similarity=0.241 Sum_probs=147.1
Q ss_pred CCCCcccccccccccCCeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEE
Q 009261 73 TEPETNSQEEKFDWFSQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 151 (539)
Q Consensus 73 ~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~ 151 (539)
+.++.++.|.+.+|.+.|++||+++||++ |+++.++++|++|+|+|+.+ |+++||+|+|||||++|+.|.+++.+.|+
T Consensus 29 td~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~-G~v~a~~n~C~Hrga~L~~g~~~~~~~i~ 107 (470)
T 2b1x_A 29 NDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEG-GEIRGHLNACRHRGMQVCRAEMGNTSHFR 107 (470)
T ss_dssp SCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCSCCSSEEECSEEE
T ss_pred CCHHHHHHHHHHHhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCC-CCEEEEecccCCCCCEeeccCcCCCCEEE
Confidence 36788999999999999999999999985 78889999999999999875 89999999999999999999886546899
Q ss_pred cccCCeEEcCCCccccCCCCCCCCCCCCCcccccceee-eEEEeCCeEEEcCCCCCc-chhhhhcCCCCCCC---CCCCC
Q 009261 152 CPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVY-PSAVQNGILWFWPDIAPQ-CKDIIKTKKPPHIP---ELDDP 226 (539)
Q Consensus 152 CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~y-pv~~~~g~vwV~~~~~~~-~~d~~~~~~~p~~p---~l~~~ 226 (539)
||||||+||.||+|+.+|..+...+...++++.++..+ .|++++|+|||++++++. ..+.+... ...+. +....
T Consensus 108 CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~~~~~l~~~-~~~~d~~~~~~~~ 186 (470)
T 2b1x_A 108 CPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDL-KFYLDIVLDRSDA 186 (470)
T ss_dssp CTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCCCHHHHHGGG-HHHHHHHHCSSSS
T ss_pred ECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCCCHHHHhcch-hHHHHHHhccCCC
Confidence 99999999999999999986432111234556788888 577789999999986532 22221110 00000 00123
Q ss_pred CCceE--eeEEEEecChhhHhhhC-CCCCCcccccccccc
Q 009261 227 SFTKM--FGSRDVPYGYEVLMENL-MDPAHLTYAHYGMMR 263 (539)
Q Consensus 227 ~~~~~--~~~~~~~~~~~~~vEN~-lD~~H~~~~H~~~~~ 263 (539)
++... ...++++||||.++||+ +|+||++++|+++++
T Consensus 187 ~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 187 GLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp CEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred CeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 34332 34578999999999999 999999999999764
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=2.4e-34 Score=308.47 Aligned_cols=189 Identities=14% Similarity=0.177 Sum_probs=147.9
Q ss_pred CCCCcccccccccccCCeEEeeecCCCC-CCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEE
Q 009261 73 TEPETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 151 (539)
Q Consensus 73 ~~~~~~~~e~~~~~~~~W~~v~~~~dl~-~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~ 151 (539)
+.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|||+|+.+ |+++||.|+|||||++|+.|.....+.|+
T Consensus 41 td~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~d-G~v~A~~n~C~Hrga~L~~g~~g~~~~i~ 119 (457)
T 3gzx_A 41 ADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKD-QSIKVFLNQCRHRGMRIVRSDGGNAKAFT 119 (457)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEECSEEE
T ss_pred CCHHHHHHHHHHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCC-CeEEEEeCcCCCCCcCccCCCCCcCCEEE
Confidence 4688999999999999999999999998 488999999999999999875 89999999999999999998753347999
Q ss_pred cccCCeEEcCCCccccCCCCCCCCC-----CC-CCcccccceeeeEEEeCCeEEEcCCCCCc-chhhhhcCCCCCCCC-C
Q 009261 152 CPYHGWCFSGSGDCKFIPQAPPDGP-----PV-HTSKKACAAVYPSAVQNGILWFWPDIAPQ-CKDIIKTKKPPHIPE-L 223 (539)
Q Consensus 152 CpyHGW~F~~~G~c~~iP~~~~~~~-----~~-~~~~~~~l~~ypv~~~~g~vwV~~~~~~~-~~d~~~~~~~p~~p~-l 223 (539)
||||||+||.+|+|+.+|..+...+ .. .++.+.+|+.|+|.+++|+||||+++++. +.+.+.. ..+.+.. +
T Consensus 120 CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~l~e~lg~-~~~~ld~~~ 198 (457)
T 3gzx_A 120 CTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSD-AMPYMDVML 198 (457)
T ss_dssp CTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCCHHHHTTT-CHHHHHHHH
T ss_pred cCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCChHHHHhh-hHHHHHHHh
Confidence 9999999999999999997532110 11 34566889999999999999999986532 2222110 0000100 1
Q ss_pred CC--CCCceE--eeEEEEecChhhHhhhC-CCCCCcc-cccccccc
Q 009261 224 DD--PSFTKM--FGSRDVPYGYEVLMENL-MDPAHLT-YAHYGMMR 263 (539)
Q Consensus 224 ~~--~~~~~~--~~~~~~~~~~~~~vEN~-lD~~H~~-~~H~~~~~ 263 (539)
+. .++... ....+++||||.++||+ +|+||++ ++|..+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 199 DRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp SSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred ccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 21 233333 34578999999999999 8999999 99998764
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=7e-33 Score=298.78 Aligned_cols=187 Identities=18% Similarity=0.212 Sum_probs=144.1
Q ss_pred CCCCcccccccccccCCeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEE
Q 009261 73 TEPETNSQEEKFDWFSQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 151 (539)
Q Consensus 73 ~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~ 151 (539)
+.++.++.|.+.+|.+.|++||+++||++ |+.+.++++|++|+|+|+.+ |+++||+|+|||||++|+.|..++.+.|+
T Consensus 39 ~d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~-G~v~a~~n~CpHrga~L~~g~~g~~~~i~ 117 (460)
T 1uli_A 39 TDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKN-GEIRVFLNQCRHRGMRICRADGGNAKSFT 117 (460)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEECSCEE
T ss_pred CCHHHHHHHHHHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCC-CCEEEEeeeCCCCCCCCccccCCCCCEEE
Confidence 46788899999999999999999999985 77789999999999999875 89999999999999999998875446899
Q ss_pred cccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCC-cchhhhhcCCCCCCCC-CCC--CC
Q 009261 152 CPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAP-QCKDIIKTKKPPHIPE-LDD--PS 227 (539)
Q Consensus 152 CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~-~~~d~~~~~~~p~~p~-l~~--~~ 227 (539)
||||||+||.+|+|+.+|......+ ..++.+.+|++|+|++++|+|||++++++ .+.+.+.. ..+.+.. ++. .+
T Consensus 118 CpyHgw~fd~~G~~~~~P~~~~~~~-~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~-~~~~l~~~~~~~~~~ 195 (460)
T 1uli_A 118 CSYHGWAYDTGGNLVSVPFEEQAFP-GLRKEDWGPLQARVETYKGLIFANWDADAPDLDTYLGE-AKFYMDHMLDRTEAG 195 (460)
T ss_dssp CTTTCCEECTTCCEEECTTHHHHCT-TCCGGGSSCCEEEEEEETTEEEEECCTTSCCHHHHHTT-HHHHHHHHHCSSTTC
T ss_pred cCCCCCEEeCCCCEeeCCccccccC-CCCHhHcCCceeeEEEECCEEEEEeCCCCCCHHHHhcc-hHHHHHHHhhcCCCc
Confidence 9999999999999999997532111 23456688999999999999999998653 22221110 0000000 111 12
Q ss_pred Cce--EeeEEEEecChhhHhhhC-CCCCCc-cccccccc
Q 009261 228 FTK--MFGSRDVPYGYEVLMENL-MDPAHL-TYAHYGMM 262 (539)
Q Consensus 228 ~~~--~~~~~~~~~~~~~~vEN~-lD~~H~-~~~H~~~~ 262 (539)
+.. ....++++||||.++||+ +|+||+ .++|...+
T Consensus 196 ~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 196 TEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp EEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred eEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 222 124578999999999999 799999 59998554
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.93 E-value=5.9e-26 Score=195.49 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=91.6
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcC-CCcccc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSG-SGDCKF 167 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~-~G~c~~ 167 (539)
.|++|+.++||++|+++.+++.|++++|+| . +|+++|++|+|||||++|+.|.+++ +.|+||||||+||. +|+|+.
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~-~g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fd~~~G~~~~ 79 (103)
T 2qpz_A 3 KWIEAVALSDILEGDVLGVTVEGKELALYE-V-EGEIYATDNLCTHGSARMSDGYLEG-REIECPLHQGRFDVCTGKALC 79 (103)
T ss_dssp CEEEEEETTSCCTTCEEEEEETTEEEEEEE-E-TTEEEEEESBCSSSSCBGGGSEEET-TEEECTTTTCEEETTTCCEEE
T ss_pred ccEEEEEHHHcCCCCEEEEEECCEEEEEEE-E-CCEEEEECCcCCCCCCCCCCCeEeC-CEEECCCCCCEEeCCCCCEeC
Confidence 699999999999999999999999999999 4 4899999999999999999999875 79999999999995 999999
Q ss_pred CCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCC
Q 009261 168 IPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPD 203 (539)
Q Consensus 168 iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~ 203 (539)
.|.. .+|++|||++++|.|||+++
T Consensus 80 ~P~~------------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 80 APVT------------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp TTCC------------SCCCEECEEEETTEEEEECC
T ss_pred CCCC------------CCCCEEeEEEECCEEEEEcC
Confidence 8843 24899999999999999864
No 15
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=5.9e-26 Score=199.62 Aligned_cols=104 Identities=22% Similarity=0.435 Sum_probs=93.6
Q ss_pred CCeEEeeecCCCCCCCCEEEEEcCe-EEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc-CCCcc
Q 009261 88 SQWYPLMPVCDLDKRVPHAKKVLGL-DVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDC 165 (539)
Q Consensus 88 ~~W~~v~~~~dl~~~~~~~~~l~g~-~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c 165 (539)
+.|++|+.++||++|+++.+++.|+ +|+|+|+ +|+++|++|+|||+|++|+.|.+++ +.|+||||||+|| .+|+|
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~--~g~~~A~~n~CpH~g~~L~~g~~~~-~~i~CP~Hg~~Fdl~tG~~ 79 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV--GDQFYATEDTCTHGIASLSEGTLDG-DVIECPFHGGAFNVCTGMP 79 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE--TTEEEEEESBCTTSSCBGGGSEEET-TEEECTTTCCEEETTTCCE
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE--CCEEEEEeCCCCCCCCCCcCCEEeC-CEEECCCCCCEEcCCCcCE
Confidence 4699999999999999999999999 9999998 4899999999999999999999875 7999999999999 59999
Q ss_pred ccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCC
Q 009261 166 KFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAP 206 (539)
Q Consensus 166 ~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~ 206 (539)
+.+|.. .+|++|||++++|.|||++++++
T Consensus 80 ~~~P~~------------~~L~~~~v~~~~g~V~v~~~~~~ 108 (115)
T 2de6_D 80 ASSPCT------------VPLGVFEVEVKEGEVYVAGEKKL 108 (115)
T ss_dssp EETTCC------------SCCCEEEEEESSSEEEEEEEEC-
T ss_pred eCCCCc------------CCCCEEEEEEECCEEEEecCCcc
Confidence 998843 34899999999999999987544
No 16
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.93 E-value=1.4e-25 Score=196.11 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=93.1
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcc-cccCCCeEEcccCCeEEcC-CCccc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG-RIDQWGRLQCPYHGWCFSG-SGDCK 166 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G-~v~~~g~l~CpyHGW~F~~-~G~c~ 166 (539)
.|++|+.++||++|+++.+++.|++|+|+|+ +|+++|++|+|||||++|++| .+++ +.|+||||||+||. ||+|+
T Consensus 5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~n~CpH~g~~L~~g~~~~~-~~i~CP~Hg~~Fd~~tG~~~ 81 (112)
T 1fqt_A 5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV--DGELFATQDRCTHGDWSLSDGGYLEG-DVVECSLHMGKFCVRTGKVK 81 (112)
T ss_dssp CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE--TTEEEEEESBCTTSSCBSSTTCCEET-TEEECTTTCCEEETTTCCEE
T ss_pred ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE--CCEEEEEECCCCCCCcCCCCCCEEcC-CEEECCCCCCEEeCCCCcEe
Confidence 5999999999999999999999999999998 489999999999999999999 7765 79999999999997 89999
Q ss_pred cCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 167 FIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 167 ~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
.+|.. .+|++|||++++|.|||+++++
T Consensus 82 ~~P~~------------~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 82 SPPPC------------EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp ESSCC------------SCCCBCCEEEETTEEEECTTCC
T ss_pred CCCCC------------CCccEEEEEEECCEEEEEeccc
Confidence 98842 3489999999999999998754
No 17
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.93 E-value=5.8e-26 Score=197.28 Aligned_cols=101 Identities=24% Similarity=0.367 Sum_probs=92.4
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeE-EEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc-CCCccc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLD-VVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCK 166 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~-lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c~ 166 (539)
.|++|+.++||++|+++.+++.|++ ++|+|+ +|+++|++|+|||+|++|+.|.+++ +.|+||||||+|| .+|+|+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~tG~~~ 79 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV--DGEVFVTDNLCTHGNAMLTDGYQDG-TIIECPFHGGSFDIATGAAK 79 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE--TTEEEEEESBCSSSSCBGGGSEEET-TEEECSSTTCEEETTTCCBC
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE--CCEEEEEeCcCCCCCCCCCCCEEeC-CEEEcCCCCCEEeCCCcCEe
Confidence 5999999999999999999999999 999998 4899999999999999999999875 7999999999999 599999
Q ss_pred cCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCC
Q 009261 167 FIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDI 204 (539)
Q Consensus 167 ~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~ 204 (539)
.+|.. .+|++|||++++|.|||++++
T Consensus 80 ~~P~~------------~~L~~~~v~~~~g~v~v~~~~ 105 (108)
T 2i7f_A 80 AFPCQ------------IPIKTYPVTIEDGWVCIDQPK 105 (108)
T ss_dssp STTCC------------SCCCEECEEEETTEEEEECC-
T ss_pred CCCCC------------CCccEEeEEEECCEEEEeCCC
Confidence 98742 348999999999999999875
No 18
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.93 E-value=5.4e-26 Score=196.82 Aligned_cols=101 Identities=23% Similarity=0.275 Sum_probs=92.6
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEc-CCCcccc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFS-GSGDCKF 167 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~-~~G~c~~ 167 (539)
+|++||.++||++|+++.+++.|++|+|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||||||+|| .+|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~~G~~~~ 77 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNV--DGEFFAVQDTCTHGDWALSDGYLDG-DIVECTLHFGKFCVRTGKVKA 77 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEE--TTEEEEEESBCSSSSCBGGGSEEET-TEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE--CCEEEEEeCcCCCCCCCCcCcEEeC-CEEECCCCCCEEeCCCCCEeC
Confidence 5999999999999999999999999999984 4899999999999999999999875 7999999999999 6999999
Q ss_pred CCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCC
Q 009261 168 IPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDI 204 (539)
Q Consensus 168 iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~ 204 (539)
.|.. .+|++|||++++|.|||++++
T Consensus 78 ~P~~------------~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 78 LPAC------------KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp TTCC------------SCCCEECEEEETTEEEECGGG
T ss_pred CCCC------------CCccEEEEEEECCEEEEEccc
Confidence 8852 348999999999999999864
No 19
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.92 E-value=1.7e-25 Score=195.86 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=91.5
Q ss_pred CCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCC-eEEEEccCCCCCCC-CCCcccccC-CC--eEEcccCCeEEcC-
Q 009261 88 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNEN-EWRVFADACPHRLA-PLSEGRIDQ-WG--RLQCPYHGWCFSG- 161 (539)
Q Consensus 88 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G-~~~a~~d~CpHrga-pLs~G~v~~-~g--~l~CpyHGW~F~~- 161 (539)
..|++|+.++||++|+++.+++.|++|+|||+.+ | +++|++|+||||++ +|++|.+++ ++ .|+||||||+||.
T Consensus 5 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~-g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~ 83 (113)
T 2jo6_A 5 SQWKDICKIDDILPETGVCALLGDEQVAIFRPYH-SDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLS 83 (113)
T ss_dssp CCCEEEEETTTSCTTEEEEEEETTEEEEEEECSS-SSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETT
T ss_pred chheEEeeHHHCCCCCeEEEEECCEEEEEEEECC-CCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCC
Confidence 3599999999999999999999999999999764 8 69999999999999 899999863 23 7999999999996
Q ss_pred CCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCC
Q 009261 162 SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPD 203 (539)
Q Consensus 162 ~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~ 203 (539)
+|+|+.+|. .+|++|||++++|.|||+++
T Consensus 84 tG~~~~~P~-------------~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 84 DGLCMEDEQ-------------FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp TTEETTTTT-------------TCCCEEEEEEETTEEEEECC
T ss_pred CccCCCCCc-------------ccccEEeEEEECCEEEEEcC
Confidence 999999874 34899999999999999875
No 20
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.92 E-value=2.3e-25 Score=194.49 Aligned_cols=102 Identities=22% Similarity=0.369 Sum_probs=92.1
Q ss_pred CeEEeeecCCCCCCCCEEEEE-cCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcC-CCccc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKV-LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSG-SGDCK 166 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l-~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~-~G~c~ 166 (539)
.|++|+.++||++|+.+.+++ .|++++|+|+.+ |+++|++|+|||||++|+.|.+++ +.|+||||||+||. +|+|+
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fd~~tG~~~ 78 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEE-HGVKAYQAMCPHQEILLSEGSYEG-GVITCRAHLWTFNDGTGHGI 78 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETT-TEEEEEESBCSSSSCBGGGSEEET-TEEECTTTCCEEETTTCBBS
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCC-CeEEEEeCcCCCCCcCCCCceEcC-CEEEcCCCCCEEeCCCccCC
Confidence 499999999999999999999 999999999864 899999999999999999999875 79999999999996 59999
Q ss_pred cCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 167 FIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 167 ~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
. |. ..+|+.|||++++|.|||+++++
T Consensus 79 ~-p~------------~~~L~~~~v~~~~g~v~v~~~~~ 104 (111)
T 1vm9_A 79 N-PD------------DAALAEYPVEVKGDDIYVSTKGI 104 (111)
T ss_dssp S-SS------------SCBCCEECEEEETTEEEECCTTC
T ss_pred C-CC------------cCCcCEEEEEEECCEEEEeccCc
Confidence 7 52 23589999999999999998754
No 21
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.92 E-value=3.5e-25 Score=196.38 Aligned_cols=102 Identities=24% Similarity=0.291 Sum_probs=92.4
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcc--cccCCCeEEcccCCeEEc-CCCcc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG--RIDQWGRLQCPYHGWCFS-GSGDC 165 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G--~v~~~g~l~CpyHGW~F~-~~G~c 165 (539)
.|++||.++||++|+++.+++.|++|+|+|+ +|+++|++|+|||+|++|+.| .+++ +.|+||||||+|| .+|+|
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~--~g~~~A~~n~CpH~g~~L~~G~~~~~~-~~i~CP~Hg~~Fdl~tG~~ 86 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD--GDSVYAISNLCSHAEAYLDMGVFHAES-LEIECPLHVGRFDVRTGAP 86 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE--TTEEEEEESBCSSSSCBGGGSEEETTT-TEEECTTTCCEEETTTCCE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE--CCEEEEEeCcCCCCCCCCCCCceeecC-CEEEcCCCCCEEcCCCccE
Confidence 5999999999999999999999999999996 489999999999999999999 7765 7999999999999 69999
Q ss_pred ccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 166 KFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 166 ~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
+.+|.. .+|++|||++++|.|||+++.+
T Consensus 87 ~~~P~~------------~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 87 TALPCV------------LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp EETTCC------------SCCCBCCEEEETTEEEECCC--
T ss_pred eCCCCc------------CCcceEEEEEECCEEEEEECcc
Confidence 998853 3489999999999999998753
No 22
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=1.1e-25 Score=199.11 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=88.0
Q ss_pred CCeEEeeecCCCCCCCCEEEEEc-CeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCC----CeEEcccCCeEEc-C
Q 009261 88 SQWYPLMPVCDLDKRVPHAKKVL-GLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQW----GRLQCPYHGWCFS-G 161 (539)
Q Consensus 88 ~~W~~v~~~~dl~~~~~~~~~l~-g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~----g~l~CpyHGW~F~-~ 161 (539)
++|++||.++||++|+...+.+. |++|+|||..+ |+++|++|+|||++++|+.|.+.++ +.|+||||||+|| .
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~d-G~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDD-GSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTT-SCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCC-CeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 36999999999999999998885 79999999875 8999999999999999988765432 3699999999999 6
Q ss_pred CCccccCCCCCCCCCCCCCcccccceeeeEEEe-CCeEEEcCC
Q 009261 162 SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQ-NGILWFWPD 203 (539)
Q Consensus 162 ~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~-~g~vwV~~~ 203 (539)
||+|+..|. .++++|||++. +|.|||.+.
T Consensus 87 tG~~~~~p~-------------~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 87 DGSCLDDPR-------------VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp TCBBSSCTT-------------CBCCEECEEECTTSEEEEEEE
T ss_pred CCcCcCCCC-------------CccceEEEEEEeCCEEEEecC
Confidence 999998773 24899999865 899999864
No 23
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.92 E-value=2.6e-25 Score=196.61 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=93.4
Q ss_pred CCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCC-CCCcccccCC---CeEEcccCCeEEcC-C
Q 009261 88 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLA-PLSEGRIDQW---GRLQCPYHGWCFSG-S 162 (539)
Q Consensus 88 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrga-pLs~G~v~~~---g~l~CpyHGW~F~~-~ 162 (539)
..|++|+.++||++|+++.+++.|++|+|||+.+ |+++|++|+||||++ ||++|.++++ +.|+||||||+||. +
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~-G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 82 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPD-SGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 82 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETT-TEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecC-CeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCC
Confidence 3699999999999999999999999999999864 899999999999999 8999998642 28999999999996 9
Q ss_pred CccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 163 GDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 163 G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
|+|+.+|. .+|++|||++++|.|||++++.
T Consensus 83 G~~~~~P~-------------~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 83 GQCLEDEA-------------HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp CBBSSCTT-------------CBCCEECEEESSSEEEEECCCC
T ss_pred CcCCCCCC-------------ceeeEEEEEEECCEEEEEeCCc
Confidence 99998874 2489999999999999998753
No 24
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.92 E-value=4.8e-25 Score=197.98 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=93.2
Q ss_pred CCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCC-CCCcccccC-CC--eEEcccCCeEEcC-C
Q 009261 88 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLA-PLSEGRIDQ-WG--RLQCPYHGWCFSG-S 162 (539)
Q Consensus 88 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrga-pLs~G~v~~-~g--~l~CpyHGW~F~~-~ 162 (539)
..|++||.++||++|+++.+++.|++|+|||+.++|+++|++|+|||||+ +|++|.+++ +| .|+||||||+||. |
T Consensus 2 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 81 (130)
T 2jza_A 2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD 81 (130)
T ss_dssp CSEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred CceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCC
Confidence 36999999999999999999999999999997552399999999999999 599999863 23 8999999999996 9
Q ss_pred CccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCC
Q 009261 163 GDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAP 206 (539)
Q Consensus 163 G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~ 206 (539)
|+|+.+|. .+|++|||++++|.|||++++++
T Consensus 82 G~~~~~P~-------------~~L~~~~v~v~~g~V~V~~~~~~ 112 (130)
T 2jza_A 82 GFCLEDGA-------------YSVAAYDTQVTNGNVQISIADSD 112 (130)
T ss_dssp CCBSSCCS-------------SCCBCCCEEESSSEEEEECCCCC
T ss_pred cCCCCCCc-------------CcceEEEEEEECCEEEEEeCCCC
Confidence 99999874 34899999999999999997543
No 25
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.91 E-value=1.9e-25 Score=206.93 Aligned_cols=116 Identities=22% Similarity=0.339 Sum_probs=95.1
Q ss_pred cCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccC---CCeEEcccCCeEEcC-C
Q 009261 87 FSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQ---WGRLQCPYHGWCFSG-S 162 (539)
Q Consensus 87 ~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~---~g~l~CpyHGW~F~~-~ 162 (539)
.+.|++||.++||++|+++.++++|++|+|||. +|+++||+|+|||||++|+.|.+++ .+.|+||||||+||. +
T Consensus 14 ~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~--~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 14 KYTSVCVGREEDIRKSERMTAVVHDREVVIFYH--KGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEE--TTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCceEEEEEHHHCCCCCeEEEEECCEEEEEEEE--CCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 357999999999988899999999999999994 4899999999999999999999863 158999999999996 9
Q ss_pred Ccccc--C-CCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 163 GDCKF--I-PQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 163 G~c~~--i-P~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
|+|+. | |...+. .+...++..+|++|||++++|+|||+++++
T Consensus 92 G~~~~~~i~P~~~~~-~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~ 136 (157)
T 3d89_A 92 GEGLYQSINPKDPSA-KPKWCSKGVKQRIHTVKVDNGNIYVTLSKE 136 (157)
T ss_dssp CEEEEEECCCC------CEEEEEEECSCEEEEEEETTEEEEECCCC
T ss_pred cCEEEeccCCCcccc-ccccccccCcceEEEEEEECCEEEEEeCCC
Confidence 99986 4 643211 000112346899999999999999999864
No 26
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.82 E-value=2.7e-20 Score=166.68 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=86.6
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeC-------------------------CCCeEEEEccCCCCCCCCCCccc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDR-------------------------NENEWRVFADACPHRLAPLSEGR 143 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~-------------------------~~G~~~a~~d~CpHrgapLs~G~ 143 (539)
.|..+ .++||++|+.+.+.+.|++++|+|.. .+|+++|++|+|||+|++|+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 46777 89999999999999999999999863 14899999999999999999998
Q ss_pred ccCCCeEEcccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEE-eCCeEEE
Q 009261 144 IDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAV-QNGILWF 200 (539)
Q Consensus 144 v~~~g~l~CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~-~~g~vwV 200 (539)
.++ +.|+||||||+||.+|+|+..|.. ..|+.||+++ .+|.|||
T Consensus 84 ~~~-~~i~CP~Hg~~fd~~G~~~~~P~~------------~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDF-GGYYCPCHGSHYDASGRIRKGPAP------------LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTT-EEEEETTTTEEEETTCCEEESSCC------------SCCCCCCEEESSSSEEEE
T ss_pred CCC-CEEEcCCCCCEEcCCCCEeeCCCC------------CCCCceeEEEEeCCEEEE
Confidence 764 789999999999999999998743 2389999999 8999987
No 27
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.81 E-value=1.1e-20 Score=171.33 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=86.3
Q ss_pred CeEEeee-cCCCCCCCCEEEE-EcCeEEEEEEeCCCCeE--EEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCc
Q 009261 89 QWYPLMP-VCDLDKRVPHAKK-VLGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGD 164 (539)
Q Consensus 89 ~W~~v~~-~~dl~~~~~~~~~-l~g~~lvl~r~~~~G~~--~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~ 164 (539)
.|+.++. ++||+++..+.+. +.|++++++|+. +|++ +|++|+|||||++|+.|. . ++.|+||||||+||.+|+
T Consensus 21 ~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~-~G~i~~~A~~n~CpH~g~~L~~g~-~-~~~i~CP~Hg~~Fd~tG~ 97 (139)
T 1rfs_A 21 NDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVES-DKTLATFGINAVCTHLGCVVPFNA-A-ENKFICPCHGSQYNNQGR 97 (139)
T ss_dssp CBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCT-TSSBCSEEEECBCTTTCCBCCEET-T-TTEEECTTTCCEEETTCC
T ss_pred CEEEeehhHhhCCCCccEEEEecCCCeEEEEEeC-CCcEEEEEEeCcCCCCCCCCccCC-C-CCEEEcCCCCCEECCCCC
Confidence 5888888 8999988777665 578888888876 4899 999999999999999987 3 379999999999999999
Q ss_pred cccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCC
Q 009261 165 CKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDI 204 (539)
Q Consensus 165 c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~ 204 (539)
|+..|.. .+|+.|||++.+|.|||.+..
T Consensus 98 ~~~~P~~------------~~L~~~~v~v~~g~V~V~~~~ 125 (139)
T 1rfs_A 98 VVRGPAP------------LSLALAHCDVDDGKVVFVPWT 125 (139)
T ss_dssp EEESSCC------------SCCCEEEEEEETTEEEEEECC
T ss_pred CccCCCC------------CCCCEEEEEEECCEEEEEeCC
Confidence 9998842 348999999999999998643
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.79 E-value=1.9e-19 Score=162.02 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=85.1
Q ss_pred CeEEeeecCCCCCCCCEEEEEc--CeEEEEEEeC--------CCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeE
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVL--GLDVVVWWDR--------NENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWC 158 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~--g~~lvl~r~~--------~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~ 158 (539)
-|+.||.++||++|+++.+++. |++++|+|.. ++|+++|++|+|||+|++|+.+ .+ ++.|+||||||+
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~-~~~i~CP~Hg~~ 84 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SS-SKTFSCPCHFTE 84 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TT-TTEEECTTTCCE
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cC-CCEEECCCCCCE
Confidence 3899999999999999999986 8999999974 1489999999999999999973 33 479999999999
Q ss_pred EcC--CCccccCCCCCCCCCCCCCcccccceeeeEEEe--CCeEEEc
Q 009261 159 FSG--SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQ--NGILWFW 201 (539)
Q Consensus 159 F~~--~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~--~g~vwV~ 201 (539)
||. +|+|+..|.. ..|+.|++++. +|.|||-
T Consensus 85 Fd~~~~G~~~~gP~~------------~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 85 FDAEKAGQMICGEAT------------ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EEGGGTTEEEESSCS------------SCCCEEEEEEETTTTEEEEE
T ss_pred ECCCCCCCEEcCCCC------------CCCCEEEEEEECCCCEEEEE
Confidence 996 8999998742 23899999999 6789984
No 29
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.64 E-value=2e-20 Score=167.98 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=79.1
Q ss_pred eecCCCCCCCCEEEE-EcCeEEEEEEeCCCCe--EEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccCCC
Q 009261 94 MPVCDLDKRVPHAKK-VLGLDVVVWWDRNENE--WRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQ 170 (539)
Q Consensus 94 ~~~~dl~~~~~~~~~-l~g~~lvl~r~~~~G~--~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~iP~ 170 (539)
...+|+++|+...++ +.|.+++++|+.+ |+ ++|++|+||||+++|+.|. + ++.|+||||||+||.+|+|+.+|.
T Consensus 21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~-G~~~v~A~~n~CpH~g~~L~~g~-~-~~~i~CP~Hg~~Fd~tG~~~~~P~ 97 (133)
T 3azc_A 21 EYLAKHLPGDRSLAQGIKGDPTYVIVTED-HQIANYGLNAVCTHLGCVVPWNV-S-ENKFICPCHGSQYDSTGKVVRGPA 97 (133)
Confidence 345678777666655 4566666666554 78 9999999999999999987 3 368999999999999999999874
Q ss_pred CCCCCCCCCCcccccceeeeEEE-eCCeEEEcCCCCC
Q 009261 171 APPDGPPVHTSKKACAAVYPSAV-QNGILWFWPDIAP 206 (539)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~ypv~~-~~g~vwV~~~~~~ 206 (539)
. .+|++|||++ .+|.|||.++.+.
T Consensus 98 ~------------~~L~~ypv~v~~~g~V~V~~~~e~ 122 (133)
T 3azc_A 98 P------------LSLALVKATVTEDDKLVFTPWTEI 122 (133)
Confidence 2 2489999999 9999999987543
No 30
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.76 E-value=8.7e-19 Score=164.52 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=83.8
Q ss_pred eEEeeecCCCCCCCCEEEEEcC--eEEEEEEeC--------CCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEE
Q 009261 90 WYPLMPVCDLDKRVPHAKKVLG--LDVVVWWDR--------NENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCF 159 (539)
Q Consensus 90 W~~v~~~~dl~~~~~~~~~l~g--~~lvl~r~~--------~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F 159 (539)
...||.++||++|+++.+++.| ++++|+|.. .+|+++|++|+|||+|++|+.| .+ ++.|+||||||+|
T Consensus 51 ~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~-~~~i~CP~Hg~~F 128 (175)
T 4aay_B 51 ANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-AD-NKTFNCPGHFSVF 128 (175)
T ss_dssp CEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TT-TTEEECTTTCCEE
T ss_pred cceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CC-CCEEEcCCCCCEE
Confidence 4579999999999999999875 589999972 2489999999999999999998 44 4799999999999
Q ss_pred cC--CCccccCCCCCCCCCCCCCcccccceeeeEEE-eCCeEEEc
Q 009261 160 SG--SGDCKFIPQAPPDGPPVHTSKKACAAVYPSAV-QNGILWFW 201 (539)
Q Consensus 160 ~~--~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~-~~g~vwV~ 201 (539)
|. +|+|+..|.. ..|+.||+++ .+|.||+-
T Consensus 129 d~~~tG~~~~gPa~------------~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 129 DPEKGGQQVWGQAT------------QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp EGGGTTEEEECSCS------------SCCCBEEEEECTTSEEEEE
T ss_pred CCCCCceEecCCCC------------CCcCEEEEEEEcCCEEEEE
Confidence 95 5999998853 2389999999 69999954
No 31
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.69 E-value=5.3e-17 Score=147.26 Aligned_cols=94 Identities=19% Similarity=0.283 Sum_probs=81.1
Q ss_pred eecCCCCCCCCEEEEEcCeEEEEEEeC---------------------------------------CCCeEEEEccCCCC
Q 009261 94 MPVCDLDKRVPHAKKVLGLDVVVWWDR---------------------------------------NENEWRVFADACPH 134 (539)
Q Consensus 94 ~~~~dl~~~~~~~~~l~g~~lvl~r~~---------------------------------------~~G~~~a~~d~CpH 134 (539)
..+++|++|+.+.++..|++|.|.|.. .+|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 357899999999999999999998851 15899999999999
Q ss_pred CCCCCCc-ccccCCCeEEcccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEE-eCCeEEE
Q 009261 135 RLAPLSE-GRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAV-QNGILWF 200 (539)
Q Consensus 135 rgapLs~-G~v~~~g~l~CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~-~~g~vwV 200 (539)
+|++|+. +..++ +.|.||||||+||.+|+|+..|.. ..|..||+++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~-~~~~CP~Hgs~Fd~~G~~~~gPa~------------~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDF-GGWFCPCHGSHWDSAGRIRKGPAP------------ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTT-TEEEETTTTEEECTTSCEEESSCC------------SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCC-CEEEcCCCCCEECCCCCCccCCCC------------CCCCceeEEEEECCEEEE
Confidence 9999998 66543 789999999999999999998743 2388999999 7999987
No 32
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.69 E-value=5.1e-17 Score=155.14 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=83.6
Q ss_pred eeecCCCCCCCCEEEEEcCeEEEEEEeC-------------------------CCCeEEEEccCCCCCCCCCCcccccCC
Q 009261 93 LMPVCDLDKRVPHAKKVLGLDVVVWWDR-------------------------NENEWRVFADACPHRLAPLSEGRIDQW 147 (539)
Q Consensus 93 v~~~~dl~~~~~~~~~l~g~~lvl~r~~-------------------------~~G~~~a~~d~CpHrgapLs~G~v~~~ 147 (539)
.+.++||++|+...+++.|++++|+|.. .+|+|+|+.|+|||+|++|+.|..+.
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~- 153 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF- 153 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTT-
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCC-
Confidence 4789999999999999999999999862 14899999999999999999987764
Q ss_pred CeEEcccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEE-eCCeEEE
Q 009261 148 GRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAV-QNGILWF 200 (539)
Q Consensus 148 g~l~CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~-~~g~vwV 200 (539)
+.|.||||||+||.+|+++..|.. ..|..||+++ .+|.|+|
T Consensus 154 ~~~~CP~HGs~FD~~G~v~~gPa~------------~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 154 GGYYCPCHGSHYDASGRIRKGPAP------------LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SSEEETTTTEEECTTCCEEESSCC------------SCCCCCCEEEETTTEEEE
T ss_pred CEEEeCCCCCEECCCCCCccCCCC------------CCCcceeEEEEECCEEEE
Confidence 789999999999999999998743 2388999999 7999987
No 33
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.68 E-value=8e-17 Score=152.67 Aligned_cols=97 Identities=16% Similarity=0.250 Sum_probs=82.1
Q ss_pred CeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCC-------------------------CCeEEEEccCCCCCCCC-CCcc
Q 009261 89 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRN-------------------------ENEWRVFADACPHRLAP-LSEG 142 (539)
Q Consensus 89 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~-------------------------~G~~~a~~d~CpHrgap-Ls~G 142 (539)
.|+.| .++||++|+...+++.|++++|+|..+ +|+|+|+.|+|||+|+. +..+
T Consensus 62 ~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~~ 140 (185)
T 3cx5_E 62 AKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEA 140 (185)
T ss_dssp CCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEE
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccCC
Confidence 59999 699999999999999999999998741 48999999999999995 6554
Q ss_pred cccCCCeEEcccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEE
Q 009261 143 RIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWF 200 (539)
Q Consensus 143 ~v~~~g~l~CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV 200 (539)
. + .+.|.||||||+||.+|+|+..|.. ..|..+|+++.+|.|||
T Consensus 141 ~-~-~~~~~CPcHGs~FD~~G~v~~gPa~------------~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 141 G-D-FGGWFCPCHGSHYDISGRIRKGPAP------------LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp T-T-TTEEEETTTTEEECTTCCEEESSCC------------SCCCCCCEEEETTEEEE
T ss_pred C-C-CCEEEcCCCCCEECCCCCEecCCCC------------CCcceEEEEEECCEEEE
Confidence 2 3 3689999999999999999998742 23777888889999987
No 34
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.68 E-value=1.2e-16 Score=151.76 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=81.4
Q ss_pred eEEeeecCCCCCCCCEEEEEcCeEEEEEEeC---------------------------------------CCCeEEEEcc
Q 009261 90 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDR---------------------------------------NENEWRVFAD 130 (539)
Q Consensus 90 W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~---------------------------------------~~G~~~a~~d 130 (539)
|+.| .++||++|+.+.+++.|++|+|+|.. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5554 78999999999999999999999831 1589999999
Q ss_pred CCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEe-CCeEEE
Q 009261 131 ACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQ-NGILWF 200 (539)
Q Consensus 131 ~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~-~g~vwV 200 (539)
+|||+|++|+.|.-.+.+.|.||||||+||.+|+|+..|.. ..|+.||+++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~------------~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP------------ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC------------SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC------------CCCceEEEEEEeCCEEEE
Confidence 99999999998421212689999999999999999998743 23899999996 688887
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.67 E-value=8.7e-17 Score=149.61 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=76.1
Q ss_pred ecCCCCCCCCEEEEEcCeE-------------EEEEEeC------------CCCeEEEEccCCCCCCCCCCcccccCCCe
Q 009261 95 PVCDLDKRVPHAKKVLGLD-------------VVVWWDR------------NENEWRVFADACPHRLAPLSEGRIDQWGR 149 (539)
Q Consensus 95 ~~~dl~~~~~~~~~l~g~~-------------lvl~r~~------------~~G~~~a~~d~CpHrgapLs~G~v~~~g~ 149 (539)
.++||++|+.+.+..-|++ +++.|.. .+| ++||.|+|||+|++|+.|.+++ +.
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~-~~ 103 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADE-EA 103 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGG-TE
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCC-CE
Confidence 5677877777777654432 4444541 234 9999999999999999998875 79
Q ss_pred EEcccCCeEEcC-CCc-cccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCC
Q 009261 150 LQCPYHGWCFSG-SGD-CKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIA 205 (539)
Q Consensus 150 l~CpyHGW~F~~-~G~-c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~ 205 (539)
|+||||||+||. +|. |+..|.. .+|..||+++.+|.|||+++..
T Consensus 104 i~CP~Hgs~Fd~~tG~~~~~gPa~------------~~L~~~~v~v~~g~V~v~~~~~ 149 (165)
T 1nyk_A 104 ALCPCHGGVYDLRHGAQVIAGPPP------------RPVPQLPVRVEDGVLVAAGEFL 149 (165)
T ss_dssp EECTTTCCEEEGGGTTEEEESSCS------------SCCCEECEEEETTEEEECSSCS
T ss_pred EECCCCCCEEcCCCCCeeecCCCC------------CCCcEEEEEEECCEEEEEecCc
Confidence 999999999996 586 9988742 3489999999999999998743
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.62 E-value=5.8e-17 Score=153.04 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=78.7
Q ss_pred cCCCCCCCCEEEE-EcCeEEEEEEeCCCCeE--EEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCccccCCCCC
Q 009261 96 VCDLDKRVPHAKK-VLGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAP 172 (539)
Q Consensus 96 ~~dl~~~~~~~~~-l~g~~lvl~r~~~~G~~--~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~c~~iP~~~ 172 (539)
.+||++|+...+. +.|++++++|+.+ |++ +|++|+|||+|++|+.|.. ++.|.||||||+||.+|+|+..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~-g~~~~~a~~~~CtH~G~~l~~~~~--~~~~~CP~Hgs~Fd~~G~~~~gPa~- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESK-EAIRDYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDETGRVIRGPAP- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTT-CCBCSCCCBCBCTTTSCBCCBCSS--SSSEECTTTCCEECSSSCCCSSSCC-
T ss_pred ccccCCCceEEEeccCCCeEEEEEECC-CcEEEEEEeCccCCCCCCCcccCC--CCEEECCCCCCEECCCCcEecCCCC-
Confidence 4688888877665 6788988888764 887 9999999999999998873 3689999999999999999988742
Q ss_pred CCCCCCCCcccccceeeeEEEeCCeEEEcCC
Q 009261 173 PDGPPVHTSKKACAAVYPSAVQNGILWFWPD 203 (539)
Q Consensus 173 ~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~ 203 (539)
..|+.||+++.+|.|||.+-
T Consensus 146 -----------~~L~~~~v~v~~g~v~v~~~ 165 (179)
T 1vf5_D 146 -----------LSLALCHATVQDDNIVLTPW 165 (179)
T ss_dssp -----------SCCBCCCCCCSSSSCCCCCC
T ss_pred -----------CCCCeEEEEEECCEEEEEee
Confidence 24899999999999999763
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.51 E-value=3.3e-15 Score=143.49 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=70.0
Q ss_pred EEEEEcCeEEEEEEeC-----------CCCeEEEEccCCCCCCCCCCcccc----------cCCCeEEcccCCeEEcCC-
Q 009261 105 HAKKVLGLDVVVWWDR-----------NENEWRVFADACPHRLAPLSEGRI----------DQWGRLQCPYHGWCFSGS- 162 (539)
Q Consensus 105 ~~~~l~g~~lvl~r~~-----------~~G~~~a~~d~CpHrgapLs~G~v----------~~~g~l~CpyHGW~F~~~- 162 (539)
..+++.|.+++++|.. .+|+++|+.|+|||+|++|+.|.+ ...+.|+||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 4577888888888764 038999999999999999999864 124789999999999965
Q ss_pred -CccccCCCCCCCCCCCCCcccccceeeeEEEe--CCeEEEcCC
Q 009261 163 -GDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQ--NGILWFWPD 203 (539)
Q Consensus 163 -G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~--~g~vwV~~~ 203 (539)
|+|+..|.. ..|+.|++.+. +|.|||...
T Consensus 136 GG~v~~gPa~------------~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 136 GGVVVSGPAP------------RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp TSEEEESSCC------------SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCeEecCCCC------------CCCCeEeeEEEecCCEEEEEeC
Confidence 699988742 23788998887 899998754
No 38
>3hug_B Probable conserved membrane protein; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=55.52 E-value=5.6 Score=33.59 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=25.0
Q ss_pred hhHhHHhhccCChhhHHHHHHHHHHHHHHH
Q 009261 452 LMDRYWSHVVNCKSCNAAHKSLNALEVILQ 481 (539)
Q Consensus 452 lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~ 481 (539)
--.++++|-..|+.|++.++.++.+...+.
T Consensus 43 e~~~vEaHLa~Cp~CR~ev~eL~~~~a~L~ 72 (108)
T 3hug_B 43 DRREFEAHLAGCPECRGAVTELCGVPALLS 72 (108)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTHHHHHT
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 445789999999999999999998765554
No 39
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=47.18 E-value=8.2 Score=32.88 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=16.1
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|+..|+.|++|++.++.-
T Consensus 9 ~~~~C~~c~ka~~~L~~~ 26 (120)
T 3fz4_A 9 EYPKCSTCRRAKAELDDL 26 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 678999999999999874
No 40
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=45.08 E-value=9.3 Score=32.47 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=16.0
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|...|+.|++|++.++.-
T Consensus 10 ~~p~C~~c~ka~~~L~~~ 27 (119)
T 3f0i_A 10 HNPKCSKSRETLALLENQ 27 (119)
T ss_dssp CCTTCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 678999999999999873
No 41
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=42.97 E-value=10 Score=32.24 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=15.9
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|+..|+.|++|++.++.-
T Consensus 10 ~~p~C~~c~ka~~~L~~~ 27 (120)
T 3gkx_A 10 QYPACSTCQKAKKWLIEN 27 (120)
T ss_dssp ECTTCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 678999999999999873
No 42
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=39.94 E-value=12 Score=31.92 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=15.9
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|...|+.|++|++.++.-
T Consensus 11 ~~p~C~~c~ka~~~L~~~ 28 (121)
T 3rdw_A 11 HNPRCSKSRETLALVEQQ 28 (121)
T ss_dssp CCTTCHHHHHHHHHHHTT
T ss_pred ECCCCHHHHHHHHHHHHc
Confidence 678999999999999863
No 43
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=36.58 E-value=15 Score=31.09 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.7
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|...|+.|++|.+.++..
T Consensus 6 ~~~~C~~c~ka~~~L~~~ 23 (120)
T 3l78_A 6 LSPSCTSCRKARAWLNRH 23 (120)
T ss_dssp ECSSCHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 567899999999999873
No 44
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=36.21 E-value=15 Score=32.15 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=15.8
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|...|+.|++|++.++.-
T Consensus 8 ~~p~C~~crkak~~L~~~ 25 (141)
T 1s3c_A 8 HNPASGTSRNTLEMIRNS 25 (141)
T ss_dssp CCTTCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 578999999999999873
No 45
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=35.91 E-value=16 Score=30.55 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=15.3
Q ss_pred hccCChhhHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNA 475 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~ 475 (539)
|..+|+.|++|.+.++.
T Consensus 6 ~~~~C~~C~kak~~L~~ 22 (114)
T 1rw1_A 6 GIKACDTMKKARTWLDE 22 (114)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 56799999999999987
No 46
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=34.62 E-value=21 Score=32.98 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.8
Q ss_pred hHhHHhhccCChhhHHHHHHHHHHH
Q 009261 453 MDRYWSHVVNCKSCNAAHKSLNALE 477 (539)
Q Consensus 453 ldRy~~Ht~~C~sC~~Al~~~~~~~ 477 (539)
--...+|-..|+.|++.++.++++.
T Consensus 25 ~~~ve~HL~~C~~Cr~~v~~l~~~~ 49 (195)
T 2q1z_B 25 SLVVATHLSLCDECRARAGALDAVG 49 (195)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHCHHHHHHHHHHHHHH
Confidence 3567899999999999999999864
No 47
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=33.75 E-value=18 Score=30.51 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.9
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|+..|+.|++|.+.++..
T Consensus 11 ~~~~C~~C~ka~~~L~~~ 28 (120)
T 2kok_A 11 GIKNCDTMKKARIWLEDH 28 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 578999999999999874
No 48
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=23.35 E-value=34 Score=29.22 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=15.7
Q ss_pred hccCChhhHHHHHHHHHH
Q 009261 459 HVVNCKSCNAAHKSLNAL 476 (539)
Q Consensus 459 Ht~~C~sC~~Al~~~~~~ 476 (539)
|...|+.|++|.+.++..
T Consensus 7 ~~~~C~~C~ka~~~L~~~ 24 (132)
T 1z3e_A 7 TSPSCTSCRKARAWLEEH 24 (132)
T ss_dssp ECTTCHHHHHHHHHHHHT
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 567999999999999874
Done!