Your job contains 1 sequence.
>009263
MLIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPH
GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPS
VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATN
RRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG
ARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGV
AMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLG
GRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKVKFVGPR
LDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLL
NQKEIGREEIDFILNNYPPQTPISRLLEEENPGTLPFIKQEQCSQVEHALVNHSKGEIS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009263
(539 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2138146 - symbol:FtsHi1 "FTSH inactive proteas... 2092 1.5e-216 1
TIGR_CMR|GSU_1809 - symbol:GSU_1809 "cell division protei... 706 1.1e-69 1
UNIPROTKB|Q55700 - symbol:ftsH2 "ATP-dependent zinc metal... 698 8.0e-69 1
UNIPROTKB|Q3AFJ8 - symbol:ftsH "ATP-dependent zinc metall... 673 8.7e-69 2
TIGR_CMR|CHY_0214 - symbol:CHY_0214 "cell division protei... 673 8.7e-69 2
TAIR|locus:2052806 - symbol:VAR2 "VARIEGATED 2" species:3... 692 3.5e-68 1
TAIR|locus:2009235 - symbol:FTSH8 "FTSH protease 8" speci... 688 9.2e-68 1
TAIR|locus:2011952 - symbol:FTSH1 "FTSH protease 1" speci... 649 6.1e-66 2
TIGR_CMR|NSE_0423 - symbol:NSE_0423 "ATP-dependent metall... 669 9.4e-66 1
UNIPROTKB|P37476 - symbol:ftsH "ATP-dependent zinc metall... 667 1.5e-65 1
UNIPROTKB|Q5LNU8 - symbol:ftsH "ATP-dependent zinc metall... 666 2.0e-65 1
TIGR_CMR|SPO_3105 - symbol:SPO_3105 "ATP-dependent metall... 666 2.0e-65 1
TIGR_CMR|BA_0064 - symbol:BA_0064 "cell division protein ... 665 2.5e-65 1
TIGR_CMR|CBU_1352 - symbol:CBU_1352 "ATP-dependent metall... 658 1.4e-64 1
UNIPROTKB|Q2GFA1 - symbol:ftsH "ATP-dependent zinc metall... 632 1.4e-64 2
TIGR_CMR|ECH_1098 - symbol:ECH_1098 "ATP-dependent metall... 632 1.4e-64 2
DICTYBASE|DDB_G0284249 - symbol:DDB_G0284249 "peptidase M... 592 6.1e-64 2
UNIPROTKB|Q9KU86 - symbol:ftsH "ATP-dependent zinc metall... 651 7.6e-64 1
TIGR_CMR|VC_0637 - symbol:VC_0637 "cell division protein ... 651 7.6e-64 1
TAIR|locus:2157637 - symbol:VAR1 "VARIEGATED 1" species:3... 649 1.2e-63 1
UNIPROTKB|P0AAI3 - symbol:ftsH species:83333 "Escherichia... 646 2.6e-63 1
TIGR_CMR|CPS_3452 - symbol:CPS_3452 "ATP-dependent metall... 646 2.6e-63 1
TIGR_CMR|SO_1197 - symbol:SO_1197 "ATP-dependent metallop... 645 3.3e-63 1
UNIPROTKB|F1PRV6 - symbol:YME1L1 "Uncharacterized protein... 565 8.8e-63 3
UNIPROTKB|Q96TA2 - symbol:YME1L1 "ATP-dependent zinc meta... 564 1.1e-62 3
TIGR_CMR|DET_0391 - symbol:DET_0391 "ATP-dependent metall... 637 2.3e-62 1
SGD|S000004695 - symbol:YTA12 "Component of the mitochond... 596 2.9e-62 2
UNIPROTKB|F1RVK1 - symbol:YME1L1 "Uncharacterized protein... 565 2.9e-62 3
UNIPROTKB|A6QR12 - symbol:YME1L1 "Uncharacterized protein... 565 2.9e-62 3
MGI|MGI:1351651 - symbol:Yme1l1 "YME1-like 1 (S. cerevisi... 564 2.9e-62 3
UNIPROTKB|G3V886 - symbol:Yme1l1 "YME1-like 1 (S. cerevis... 564 2.9e-62 3
TAIR|locus:2075581 - symbol:ftsh7 "FTSH protease 7" speci... 636 3.0e-62 1
UNIPROTKB|P0C5C0 - symbol:ftsH "ATP-dependent zinc metall... 631 1.0e-61 1
UNIPROTKB|Q2GIT4 - symbol:ftsH "ATP-dependent zinc metall... 629 1.6e-61 1
TIGR_CMR|APH_1179 - symbol:APH_1179 "ATP-dependent metall... 629 1.6e-61 1
DICTYBASE|DDB_G0272120 - symbol:rcaA "peptidase M41, FtsH... 580 2.3e-61 2
RGD|620764 - symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" ... 554 3.3e-61 3
CGD|CAL0004443 - symbol:orf19.2057 species:5476 "Candida ... 602 3.3e-61 2
TAIR|locus:2154568 - symbol:ftsh9 "FTSH protease 9" speci... 626 3.4e-61 1
UNIPROTKB|Q2KJI7 - symbol:AFG3L2 "AFG3-like protein 2" sp... 578 2.9e-60 2
UNIPROTKB|E2QYF3 - symbol:AFG3L2 "Uncharacterized protein... 576 4.8e-60 2
UNIPROTKB|Q9Y4W6 - symbol:AFG3L2 "AFG3-like protein 2" sp... 576 4.8e-60 2
MGI|MGI:1916847 - symbol:Afg3l2 "AFG3(ATPase family gene ... 573 1.3e-59 2
UNIPROTKB|F1LN92 - symbol:Afg3l2 "Protein Afg3l2" species... 573 3.3e-59 2
TIGR_CMR|CJE_1259 - symbol:CJE_1259 "cell division protei... 607 3.5e-59 1
WB|WBGene00004978 - symbol:spg-7 species:6239 "Caenorhabd... 583 4.2e-59 2
UNIPROTKB|A7E2Z6 - symbol:SPG7 "SPG7 protein" species:991... 570 4.2e-59 2
ZFIN|ZDB-GENE-070410-25 - symbol:yme1l1b "YME1-like 1b" s... 541 1.4e-58 3
UNIPROTKB|E1BFQ0 - symbol:E1BFQ0 "Uncharacterized protein... 579 1.4e-58 2
RGD|1309722 - symbol:Afg3l1 "AFG3(ATPase family gene 3)-l... 573 1.4e-58 2
MGI|MGI:1928277 - symbol:Afg3l1 "AFG3(ATPase family gene ... 571 2.3e-58 2
POMBASE|SPCC965.04c - symbol:SPCC965.04c "mitochondrial i... 571 2.9e-58 2
UNIPROTKB|E1BZ74 - symbol:AFG3L2 "Uncharacterized protein... 572 3.8e-58 2
UNIPROTKB|F1N9N5 - symbol:AFG3L2 "Uncharacterized protein... 572 3.8e-58 2
POMBASE|SPBC543.09 - symbol:yta12 "mitochondrial m-AAA pr... 594 8.4e-58 1
WB|WBGene00010842 - symbol:ymel-1 species:6239 "Caenorhab... 593 1.1e-57 1
ASPGD|ASPL0000072959 - symbol:AN4557 species:162425 "Emer... 596 1.2e-57 1
UNIPROTKB|J9NRR9 - symbol:YME1L1 "Uncharacterized protein... 565 1.6e-57 2
UNIPROTKB|F1NTK8 - symbol:YME1L1 "Uncharacterized protein... 540 1.6e-57 2
UNIPROTKB|F1P519 - symbol:YME1L1 "Uncharacterized protein... 540 1.6e-57 2
MGI|MGI:2385906 - symbol:Spg7 "spastic paraplegia 7 homol... 561 3.3e-57 2
UNIPROTKB|Q9UQ90 - symbol:SPG7 "Paraplegin" species:9606 ... 559 4.1e-57 2
TAIR|locus:2066128 - symbol:ftsh3 "FTSH protease 3" speci... 552 8.4e-57 2
GENEDB_PFALCIPARUM|PFL1925w - symbol:PFL1925w "cell divis... 565 8.9e-57 2
UNIPROTKB|Q8I526 - symbol:PFL1925w "Cell division protein... 565 8.9e-57 2
UNIPROTKB|E2R4F3 - symbol:SPG7 "Uncharacterized protein" ... 556 1.5e-56 2
FB|FBgn0036702 - symbol:CG6512 species:7227 "Drosophila m... 581 2.3e-56 1
ASPGD|ASPL0000029469 - symbol:AN5588 species:162425 "Emer... 552 2.5e-56 2
TAIR|locus:2025052 - symbol:ftsh10 "FTSH protease 10" spe... 544 1.2e-55 2
ZFIN|ZDB-GENE-070912-46 - symbol:afg3l2 "AFG3 ATPase fami... 572 1.8e-55 1
FB|FBgn0024992 - symbol:CG2658 species:7227 "Drosophila m... 572 2.3e-55 1
TAIR|locus:2163736 - symbol:FTSH11 "FTSH protease 11" spe... 529 4.2e-55 2
UNIPROTKB|F1NXP0 - symbol:SPG7 "Uncharacterized protein" ... 567 6.1e-55 1
FB|FBgn0034792 - symbol:CG3499 species:7227 "Drosophila m... 525 1.4e-54 2
SGD|S000006228 - symbol:YME1 "Catalytic subunit of the mi... 539 1.8e-54 2
UNIPROTKB|I3LLQ8 - symbol:AFG3L2 "Uncharacterized protein... 522 2.9e-54 2
TAIR|locus:2057386 - symbol:ftsh4 "FTSH protease 4" speci... 560 3.4e-54 1
WB|WBGene00021425 - symbol:ppgn-1 species:6239 "Caenorhab... 559 4.3e-54 1
CGD|CAL0000075 - symbol:AFG3 species:5476 "Candida albica... 559 4.8e-54 1
UNIPROTKB|Q5AJC2 - symbol:AFG3 "Putative uncharacterized ... 559 4.8e-54 1
ZFIN|ZDB-GENE-030131-5391 - symbol:spg7 "spastic parapleg... 557 7.0e-54 1
SGD|S000000819 - symbol:AFG3 "Component, with Yta12p, of ... 555 1.1e-53 1
TIGR_CMR|GSU_1180 - symbol:GSU_1180 "cell division protei... 554 1.5e-53 1
GENEDB_PFALCIPARUM|PF14_0616 - symbol:PF14_0616 "i-AAA pr... 516 3.3e-53 2
UNIPROTKB|Q8IKI9 - symbol:PF14_0616 "ATP-dependent protea... 516 3.3e-53 2
RGD|727940 - symbol:Spg7 "spastic paraplegia 7 homolog (h... 451 3.2e-52 3
UNIPROTKB|Q7TT47 - symbol:Spg7 "Paraplegin" species:10116... 451 3.2e-52 3
ZFIN|ZDB-GENE-091113-41 - symbol:yme1l1a "YME1-like 1a" s... 535 1.5e-51 1
CGD|CAL0002950 - symbol:YME1 species:5476 "Candida albica... 498 4.2e-51 2
TAIR|locus:2094892 - symbol:EMB2083 "embryo defective 208... 510 8.7e-51 2
TIGR_CMR|CJE_1085 - symbol:CJE_1085 "cell division protei... 496 2.0e-47 1
DICTYBASE|DDB_G0293388 - symbol:DDB_G0293388 "ATP-depende... 466 1.2e-46 2
TAIR|locus:2076929 - symbol:AT3G02450 species:3702 "Arabi... 479 1.3e-45 1
TAIR|locus:2174819 - symbol:EMB3144 "EMBRYO DEFECTIVE 314... 431 3.8e-44 2
UNIPROTKB|Q58576 - symbol:pan "Proteasome-activating nucl... 462 8.1e-44 1
DICTYBASE|DDB_G0267492 - symbol:DDB_G0267492 "peptidase M... 450 5.0e-42 1
ASPGD|ASPL0000032311 - symbol:AN5747 species:162425 "Emer... 416 6.1e-39 1
TIGR_CMR|CPS_1798 - symbol:CPS_1798 "ATP-dependent peptid... 412 6.9e-39 2
CGD|CAL0005827 - symbol:RPT4 species:5476 "Candida albica... 414 9.9e-39 1
POMBASE|SPCC1682.16 - symbol:rpt4 "19S proteasome regulat... 409 3.4e-38 1
WARNING: Descriptions of 555 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2138146 [details] [associations]
symbol:FtsHi1 "FTSH inactive protease 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0008237 "metallopeptidase
activity" evidence=ISS] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0007020 "microtubule nucleation"
evidence=RCA] [GO:0010020 "chloroplast fission" evidence=IMP]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
SMART:SM00382 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0051301 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
eggNOG:COG0465 GO:GO:0017111 GO:GO:0010020 EMBL:AC002343
EMBL:AL078468 EMBL:AL161560 HSSP:Q9LCZ4 IPI:IPI00537043 PIR:T08913
RefSeq:NP_567691.1 UniGene:At.3392 ProteinModelPortal:O22993
SMR:O22993 PaxDb:O22993 PRIDE:O22993 EnsemblPlants:AT4G23940.1
GeneID:828494 KEGG:ath:AT4G23940 TAIR:At4g23940
HOGENOM:HOG000029491 InParanoid:O22993 OMA:QMAGSEF PhylomeDB:O22993
ProtClustDB:CLSN2689578 ArrayExpress:O22993 Genevestigator:O22993
Uniprot:O22993
Length = 946
Score = 2092 (741.5 bits), Expect = 1.5e-216, P = 1.5e-216
Identities = 405/517 (78%), Positives = 446/517 (86%)
Query: 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKA 78
GSTGVKF+DVAGIDEAV+ELQELV+YLKNP+LFDKMGIKPPHGVLLEGPPGCGKTLVAKA
Sbjct: 423 GSTGVKFADVAGIDEAVDELQELVKYLKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKA 482
Query: 79 IAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 138
IAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF
Sbjct: 483 IAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 542
Query: 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
K+ +D LYNAATQERETTLNQLLIELDGFDTGKGVIFL ATN FDRK
Sbjct: 543 KENSDQLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRK 602
Query: 199 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKG 258
IR+R PNAKGR +ILKIHASKVKMSDSVDLSSYA NLPGW+G K
Sbjct: 603 IRVRPPNAKGRLDILKIHASKVKMSDSVDLSSYASNLPGWSGAKLAQLVQEAALVAVRKT 662
Query: 259 HESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECC 318
H SIL SDMDDAVDRLTVGP R G+ELG+QGQ RRA TEVGVA+ SHLL RYENAK+E C
Sbjct: 663 HNSILQSDMDDAVDRLTVGPTRIGLELGHQGQCRRATTEVGVAITSHLLLRYENAKIERC 722
Query: 319 DRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASV 378
DR+SI+PRGQTLSQ+VFHRLDDESYMF R PQLLHRLQVLLGGRAAEEVIYG DTS+ASV
Sbjct: 723 DRVSIIPRGQTLSQVVFHRLDDESYMFGRLPQLLHRLQVLLGGRAAEEVIYGSDTSKASV 782
Query: 379 NYLADASWLARKILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYDDYGLTEPPV 438
+YL+DASWLARKILTIWNLENPMVIHGEPPPWRK+ +FVGPRLDFEGSLYDDY L EPPV
Sbjct: 783 DYLSDASWLARKILTIWNLENPMVIHGEPPPWRKRPQFVGPRLDFEGSLYDDYDLVEPPV 842
Query: 439 NFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP 498
NFN+DD++A R+EEL+ MY +TV+LLR++ ALLKTVKVLLNQKEI E IDFIL++YP
Sbjct: 843 NFNMDDEVAHRSEELISQMYNKTVSLLRQNQTALLKTVKVLLNQKEISGEAIDFILDHYP 902
Query: 499 PQTPISRLLEEENPGTLPFIKQE-QCSQVEHALVNHS 534
PQTP++ LL+E+NPG+LPF+ + + + LVNHS
Sbjct: 903 PQTPLNSLLQEQNPGSLPFVPEHLRRESGDFVLVNHS 939
>TIGR_CMR|GSU_1809 [details] [associations]
symbol:GSU_1809 "cell division protein FtsH"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
RefSeq:NP_952859.2 GeneID:2688702 KEGG:gsu:GSU1809 PATRIC:22026473
ProtClustDB:CLSK828573 BioCyc:GSUL243231:GH27-1860-MONOMER
Uniprot:Q74C66
Length = 610
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 152/389 (39%), Positives = 232/389 (59%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
+ ++ V F DVAG+DEA EEL+E++++LK+P+ F K+G + P GVLL GPPG GKTL
Sbjct: 142 LLTEAQGRVTFEDVAGVDEAKEELEEIIQFLKDPKKFTKLGGRIPKGVLLVGPPGTGKTL 201
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+A+A+AGEAGVPF+ ++GS+FVE+ VGVG++R+RDLF + K N P +IFIDEIDA+ R
Sbjct: 202 LARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFVQGKKNAPCIIFIDEIDAVGRHR 261
Query: 135 -QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
G+ ERE TLNQLL+E+DGF++ +GVI +AATN
Sbjct: 262 GAGL---------GGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPG 312
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR++ + P+ KGR ILK+H K ++ VDL A+ PG++G
Sbjct: 313 RFDRQVVVPQPDVKGREMILKVHTKKTPLASDVDLGVIARGTPGFSGADLSNVVNEAALL 372
Query: 254 XXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENA 313
K + D DDA D++ +G +RR + + + + A E G +++ L+
Sbjct: 373 AARKDKSFVEMKDFDDAKDKVLMGVERRSMVISEEEKKNTAYHEAGHTLVAKLI-----P 427
Query: 314 KVECCDRISIVPRGQTLSQLVFHRLDDE-SYMFERRPQLLHRLQVLLGGRAAEEVIYGQD 372
+ ++SI+PRG+ L + ++D+ SY + LL+R+ VL+GGRAAEE+I+ +
Sbjct: 428 GTDPVHKVSIIPRGRALGVTMQLPIEDKHSY---NKESLLNRIAVLMGGRAAEEIIFNEL 484
Query: 373 TSRASVNYLADASWLARKILTIWNLENPM 401
T+ A N + A+ +ARK++ W + M
Sbjct: 485 TTGAG-NDIERATEIARKMVCEWGMSEKM 512
Score = 152 (58.6 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 53/193 (27%), Positives = 100/193 (51%)
Query: 320 RISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVN 379
++SI+PRG+ L + ++D+ + + + LL+R+ VL+GGRAAEE+I+ + T+ A N
Sbjct: 434 KVSIIPRGRALGVTMQLPIEDK-HSYNKE-SLLNRIAVLMGGRAAEEIIFNELTTGAG-N 490
Query: 380 YLADASWLARKILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYDDYGLTEPPVN 439
+ A+ +ARK++ W + M G P + KK + + D S++ +Y +E
Sbjct: 491 DIERATEIARKMVCEWGMSEKM---G-PVTFGKKEESIFLGRDM--SMHKNY--SEATA- 541
Query: 440 FNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYPP 499
+D++I +++ Y R LL + + L L+ ++ + +E+D I+ +
Sbjct: 542 VEIDEEI----RKIIDGSYSRVKQLLNENLSVLHCLATQLIEKENLTGDEVDRIIKD--- 594
Query: 500 QTPISRLLEEENP 512
SR EE P
Sbjct: 595 DCAASRAAVEEAP 607
>UNIPROTKB|Q55700 [details] [associations]
symbol:ftsH2 "ATP-dependent zinc metalloprotease FtsH 2"
species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
[GO:0010206 "photosystem II repair" evidence=IMP] [GO:0042651
"thylakoid membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009523 "photosystem II" evidence=IDA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241
EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0042651 GO:GO:0010206
HOGENOM:HOG000217276 KO:K03798 PIR:S76378 RefSeq:NP_442160.1
RefSeq:YP_005652219.1 ProteinModelPortal:Q55700 SMR:Q55700
IntAct:Q55700 STRING:Q55700 MEROPS:M41.017 GeneID:12253438
GeneID:952628 KEGG:syn:slr0228 KEGG:syy:SYNGTS_2266 PATRIC:23841938
OMA:NTASTRM Uniprot:Q55700
Length = 627
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 162/383 (42%), Positives = 227/383 (59%)
Query: 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIA 80
TGV F DVAGIDEA EELQE+V +LK PE F +G K P GVLL GPPG GKTL+AKAIA
Sbjct: 167 TGVMFDDVAGIDEAKEELQEVVTFLKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIA 226
Query: 81 GEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFK 139
GEAGVPF+ ++GSEFVE+ VGVG++R+RDLFK+AK N P +IFIDEIDA+ +R GI
Sbjct: 227 GEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGI-- 284
Query: 140 DTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKI 199
ERE TLNQLL E+DGF+ G+I +AATN FDR++
Sbjct: 285 -------GGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQV 337
Query: 200 RIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGH 259
+ AP+ GR EIL++HA K++ V + S A+ PG++G +
Sbjct: 338 MVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRK 397
Query: 260 ESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAAT-EVGVAMISHLLRRYENAKVECC 318
+I ++DDAVDR+ G + G L + R A EVG A++ LL+ ++ +
Sbjct: 398 SAITLLEIDDAVDRVVAGME--GTPLVDSKSKRLIAYHEVGHAIVGTLLKDHDPVQ---- 451
Query: 319 DRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRA 376
+++++PRGQ F +E + QL+ R+ +GGRAAEE ++G D T+ A
Sbjct: 452 -KVTLIPRGQAQGLTWF--TPNEEQGLTTKAQLMARIAGAMGGRAAEEEVFGDDEVTTGA 508
Query: 377 SVNYLADASWLARKILTIWNLEN 399
+ L + +AR+++T + + N
Sbjct: 509 GGD-LQQVTEMARQMVTRFGMSN 530
>UNIPROTKB|Q3AFJ8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 RefSeq:YP_359086.1
ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8 STRING:Q3AFJ8 MEROPS:M41.021
GeneID:3726212 KEGG:chy:CHY_0214 PATRIC:21273609 OMA:TGKADDE
BioCyc:CHYD246194:GJCN-215-MONOMER Uniprot:Q3AFJ8
Length = 619
Score = 673 (242.0 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 149/380 (39%), Positives = 223/380 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F+DVAGIDE EEL E+V +LKNP ++++G + P GVLL G PG GKTL+A+AIAGE
Sbjct: 155 VTFADVAGIDEVKEELAEIVEFLKNPRKYNELGARIPKGVLLFGQPGTGKTLLARAIAGE 214
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
AGVPF+ ++GS+FVE+ VGVG++R+RDLF++AK N P ++FIDEIDA+ +R G+
Sbjct: 215 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGL---- 270
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ERE TLNQLL+E+DGF++ +G+I +AATN FDR I +
Sbjct: 271 -----GGGHDEREQTLNQLLVEMDGFNSNEGIIIIAATNRPDILDPALLRPGRFDRHIVV 325
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR EILK+H + D VDL A+ PG+TG + +
Sbjct: 326 DTPDINGRKEILKVHVKGKPLGDDVDLDVLARRTPGFTGADLANMVNEAALLAARRNKKV 385
Query: 262 ILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRI 321
I +M++A++R+ GP+++ + + + A E G AM+ +LL + +I
Sbjct: 386 INMEEMEEAIERVIAGPEKKSKVISEREKRLVAYHEAGHAMVGYLLPHTDPVH-----KI 440
Query: 322 SIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYL 381
SI+PRG+ + +D SYM + QLL + +LLGGR AE ++ +D S + N L
Sbjct: 441 SIIPRGRAGGYTLLLPEEDRSYM--TKSQLLDEITMLLGGRVAEALVL-EDISTGARNDL 497
Query: 382 ADASWLARKILTIWNLENPM 401
A+ AR+++ + + +
Sbjct: 498 ERATETARRMVMEYGMSEEL 517
Score = 43 (20.2 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 422 DFEGSLYDDYGLTEPPVNFNLD 443
+FE L + GLT+P VN N D
Sbjct: 592 EFE-KLMKENGLTKPRVNGNND 612
>TIGR_CMR|CHY_0214 [details] [associations]
symbol:CHY_0214 "cell division protein FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
RefSeq:YP_359086.1 ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8
STRING:Q3AFJ8 MEROPS:M41.021 GeneID:3726212 KEGG:chy:CHY_0214
PATRIC:21273609 OMA:TGKADDE BioCyc:CHYD246194:GJCN-215-MONOMER
Uniprot:Q3AFJ8
Length = 619
Score = 673 (242.0 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 149/380 (39%), Positives = 223/380 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F+DVAGIDE EEL E+V +LKNP ++++G + P GVLL G PG GKTL+A+AIAGE
Sbjct: 155 VTFADVAGIDEVKEELAEIVEFLKNPRKYNELGARIPKGVLLFGQPGTGKTLLARAIAGE 214
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
AGVPF+ ++GS+FVE+ VGVG++R+RDLF++AK N P ++FIDEIDA+ +R G+
Sbjct: 215 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGL---- 270
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ERE TLNQLL+E+DGF++ +G+I +AATN FDR I +
Sbjct: 271 -----GGGHDEREQTLNQLLVEMDGFNSNEGIIIIAATNRPDILDPALLRPGRFDRHIVV 325
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR EILK+H + D VDL A+ PG+TG + +
Sbjct: 326 DTPDINGRKEILKVHVKGKPLGDDVDLDVLARRTPGFTGADLANMVNEAALLAARRNKKV 385
Query: 262 ILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRI 321
I +M++A++R+ GP+++ + + + A E G AM+ +LL + +I
Sbjct: 386 INMEEMEEAIERVIAGPEKKSKVISEREKRLVAYHEAGHAMVGYLLPHTDPVH-----KI 440
Query: 322 SIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYL 381
SI+PRG+ + +D SYM + QLL + +LLGGR AE ++ +D S + N L
Sbjct: 441 SIIPRGRAGGYTLLLPEEDRSYM--TKSQLLDEITMLLGGRVAEALVL-EDISTGARNDL 497
Query: 382 ADASWLARKILTIWNLENPM 401
A+ AR+++ + + +
Sbjct: 498 ERATETARRMVMEYGMSEEL 517
Score = 43 (20.2 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 422 DFEGSLYDDYGLTEPPVNFNLD 443
+FE L + GLT+P VN N D
Sbjct: 592 EFE-KLMKENGLTKPRVNGNND 612
>TAIR|locus:2052806 [details] [associations]
symbol:VAR2 "VARIEGATED 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008237 "metallopeptidase activity"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010027
"thylakoid membrane organization" evidence=RCA;IMP] [GO:0009507
"chloroplast" evidence=IDA] [GO:0010205 "photoinhibition"
evidence=IMP] [GO:0031977 "thylakoid lumen" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA;TAS]
[GO:0016020 "membrane" evidence=IDA] [GO:0030163 "protein catabolic
process" evidence=IDA] [GO:0072593 "reactive oxygen species
metabolic process" evidence=IDA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010207
"photosystem II assembly" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] [GO:0042744 "hydrogen peroxide
catabolic process" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0010206
"photosystem II repair" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006508
GO:GO:0009941 GO:GO:0008237 GO:GO:0004222 EMBL:AC004669
GO:GO:0010027 GO:GO:0072593 GO:GO:0010205 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0031977
GO:GO:0004176 GO:GO:0010206 HOGENOM:HOG000217276 KO:K03798
GO:GO:0010304 EMBL:AF135189 EMBL:AY045599 EMBL:AY093791
EMBL:AK221155 IPI:IPI00546467 PIR:F84714 RefSeq:NP_850156.1
UniGene:At.22024 UniGene:At.71129 UniGene:At.75189
ProteinModelPortal:O80860 SMR:O80860 IntAct:O80860 STRING:O80860
MEROPS:M41.005 World-2DPAGE:0003:O80860 PaxDb:O80860 PRIDE:O80860
ProMEX:O80860 EnsemblPlants:AT2G30950.1 GeneID:817646
KEGG:ath:AT2G30950 GeneFarm:2504 TAIR:At2g30950 InParanoid:O80860
OMA:LEIIAMR PhylomeDB:O80860 ProtClustDB:CLSN2679937
Genevestigator:O80860 Uniprot:O80860
Length = 695
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 156/382 (40%), Positives = 225/382 (58%)
Query: 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAI 79
+TGV F DVAG+DEA ++ E+V +LK PE F +G K P GVLL GPPG GKTL+AKAI
Sbjct: 221 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAI 280
Query: 80 AGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIF 138
AGEAGVPF+ ++GSEFVE+ VGVG++R+RDLFK+AK N P ++F+DEIDA+ +R GI
Sbjct: 281 AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGI- 339
Query: 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
ERE TLNQLL E+DGF+ GVI +AATN FDR+
Sbjct: 340 --------GGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQ 391
Query: 199 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKG 258
+ + P+ KGRT+ILK+HA K + V L A PG++G +
Sbjct: 392 VSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRA 451
Query: 259 HESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECC 318
SI S ++DD++DR+ G + + G + +S A EVG A+ L ++ +
Sbjct: 452 RTSISSKEIDDSIDRIVAGMEGTVMTDG-KSKSLVAYHEVGHAVCGTLTPGHDAVQ---- 506
Query: 319 DRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ-DTSRAS 377
+++++PRGQ F DD + + ++ QL R+ LGGRAAEE+I+G + + +
Sbjct: 507 -KVTLIPRGQARGLTWFIPSDDPTLISKQ--QLFARIVGGLGGRAAEEIIFGDSEVTTGA 563
Query: 378 VNYLADASWLARKILTIWNLEN 399
V L + LAR+++T + + +
Sbjct: 564 VGDLQQITGLARQMVTTFGMSD 585
Score = 132 (51.5 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 49/192 (25%), Positives = 94/192 (48%)
Query: 316 ECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ-DTS 374
+ +++++PRGQ F DD + + ++ QL R+ LGGRAAEE+I+G + +
Sbjct: 503 DAVQKVTLIPRGQARGLTWFIPSDDPTLISKQ--QLFARIVGGLGGRAAEEIIFGDSEVT 560
Query: 375 RASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYDDYGLT 434
+V L + LAR+++T + + + G PW + + D + ++
Sbjct: 561 TGAVGDLQQITGLARQMVTTFGMSDI----G---PW--SLMDSSAQSDVIMRMMARNSMS 611
Query: 435 EPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFIL 494
E L +DI ++L Y ++ ++ + A+ K V+VLL ++ IG +E IL
Sbjct: 612 E-----KLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAIL 666
Query: 495 NNYPPQTPISRL 506
+ + P +R+
Sbjct: 667 SEFTEIPPENRV 678
Score = 53 (23.7 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 63 LLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 99
+L G G G KA A E GV +M+ S F+E L
Sbjct: 65 ILLGNAGVGLVASGKANADEQGVSSSRMSYSRFLEYL 101
>TAIR|locus:2009235 [details] [associations]
symbol:FTSH8 "FTSH protease 8" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=ISS] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=TAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AC007592
eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798 GO:GO:0010304
ProtClustDB:CLSN2679937 EMBL:AF419565 EMBL:BT002649 EMBL:BT003813
EMBL:AY045951 IPI:IPI00539195 RefSeq:NP_563766.3 UniGene:At.17054
ProteinModelPortal:Q8W585 SMR:Q8W585 STRING:Q8W585 MEROPS:M41.025
PaxDb:Q8W585 PRIDE:Q8W585 ProMEX:Q8W585 EnsemblPlants:AT1G06430.1
GeneID:837154 KEGG:ath:AT1G06430 GeneFarm:2474 TAIR:At1g06430
InParanoid:Q8W585 OMA:NANADEQ PhylomeDB:Q8W585
Genevestigator:Q8W585 Uniprot:Q8W585
Length = 685
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 154/380 (40%), Positives = 226/380 (59%)
Query: 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAI 79
+TGV F DVAG+DEA ++ E+V +LK PE F +G + P GVLL GPPG GKTL+AKAI
Sbjct: 214 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAI 273
Query: 80 AGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIF 138
AGEAGVPF+ ++GSEFVE+ VGVG++R+RDLFK+AK N P ++F+DEIDA+ +R GI
Sbjct: 274 AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGI- 332
Query: 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
ERE TLNQLL E+DGF+ GVI +AATN FDR+
Sbjct: 333 --------GGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQ 384
Query: 199 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKG 258
+ + P+ KGRT+ILK+H+ K V L A PG++G +G
Sbjct: 385 VSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRG 444
Query: 259 HESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECC 318
+I S ++DD++DR+ G + + G + +S A EVG A+ L ++ +
Sbjct: 445 KTAISSKEIDDSIDRIVAGMEGTVMTDG-KSKSLVAYHEVGHAICGTLTPGHDAVQ---- 499
Query: 319 DRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ-DTSRAS 377
+++++PRGQ F DD + + ++ QL R+ LGGRAAEEVI+G+ + + +
Sbjct: 500 -KVTLIPRGQARGLTWFIPSDDPTLISKQ--QLFARIVGGLGGRAAEEVIFGESEVTTGA 556
Query: 378 VNYLADASWLARKILTIWNL 397
V+ L + LA++++T + +
Sbjct: 557 VSDLQQITGLAKQMVTTFGM 576
Score = 133 (51.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 50/200 (25%), Positives = 96/200 (48%)
Query: 316 ECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ-DTS 374
+ +++++PRGQ F DD + + ++ QL R+ LGGRAAEEVI+G+ + +
Sbjct: 496 DAVQKVTLIPRGQARGLTWFIPSDDPTLISKQ--QLFARIVGGLGGRAAEEVIFGESEVT 553
Query: 375 RASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYDDYGLT 434
+V+ L + LA++++T + + E PW + + D + ++
Sbjct: 554 TGAVSDLQQITGLAKQMVTTFGMS-------EIGPW--SLMDSSEQSDVIMRMMARNSMS 604
Query: 435 EPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFIL 494
E N D D A +T L Y ++ +R + A+ K V++LL ++ + +E IL
Sbjct: 605 EKLAN---DIDTAVKT--LSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAIL 659
Query: 495 NNYPPQTPISRLLEEENPGT 514
+ + P +R+ + T
Sbjct: 660 SEFTEIPPENRVASSTSTST 679
>TAIR|locus:2011952 [details] [associations]
symbol:FTSH1 "FTSH protease 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0031977
"thylakoid lumen" evidence=IDA] [GO:0010206 "photosystem II repair"
evidence=TAS] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=RCA;TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0007275
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 eggNOG:COG0465
TIGRFAMs:TIGR01241 GO:GO:0009535 GO:GO:0031977 GO:GO:0004176
GO:GO:0010206 EMBL:AC007980 EMBL:X99808 EMBL:AY091095 EMBL:AY123034
EMBL:Y12780 IPI:IPI00518805 PIR:G96538 RefSeq:NP_564563.1
UniGene:At.21777 ProteinModelPortal:Q39102 SMR:Q39102 STRING:Q39102
MEROPS:M41.020 PaxDb:Q39102 PRIDE:Q39102 EnsemblPlants:AT1G50250.1
GeneID:841447 KEGG:ath:AT1G50250 GeneFarm:2667 TAIR:At1g50250
HOGENOM:HOG000217276 InParanoid:Q39102 KO:K03798 OMA:GGNPAMN
PhylomeDB:Q39102 ProtClustDB:CLSN2688633 Genevestigator:Q39102
GermOnline:AT1G50250 GO:GO:0010304 Uniprot:Q39102
Length = 716
Score = 649 (233.5 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 147/376 (39%), Positives = 218/376 (57%)
Query: 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIA 80
TGV F+DVAG D+A ELQE+V +LKNP+ + +G K P G LL GPPG GKTL+A+A+A
Sbjct: 257 TGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVA 316
Query: 81 GEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKD 140
GEAGVPF+ A SEFVE+ VGVG++R+RDLF++AK P ++FIDEIDA+ R++G
Sbjct: 317 GEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVG-RQRGAGM- 374
Query: 141 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIR 200
ERE T+NQLL E+DGF GVI LAATN FDR++
Sbjct: 375 ------GGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVT 428
Query: 201 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHE 260
+ P+ GR +IL++H+ + VD A+ PG+TG + +
Sbjct: 429 VDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRELK 488
Query: 261 SILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDR 320
I ++ DA++R+ GP+++ + + + A E G A++ L+ Y+ +
Sbjct: 489 EISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVA-----K 543
Query: 321 ISIVPRGQTLSQLVFHRLDD--ESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRA 376
ISI+PRGQ F ++ ES ++ R L +++ V LGGR AEEVI+G + T+ A
Sbjct: 544 ISIIPRGQAGGLTFFAPSEERLESGLYSRS-YLENQMAVALGGRVAEEVIFGDENVTTGA 602
Query: 377 SVNYLADASWLARKIL 392
S +++ S +AR+++
Sbjct: 603 SNDFM-QVSRVARQMI 617
Score = 40 (19.1 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 512 PGTLPFIKQEQCSQVEHAL 530
PG PF+ Q+ SQ ++++
Sbjct: 634 PGGNPFMGQQMSSQKDYSM 652
>TIGR_CMR|NSE_0423 [details] [associations]
symbol:NSE_0423 "ATP-dependent metalloprotease FtsH"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001 RefSeq:YP_506309.1
ProteinModelPortal:Q2GDY7 SMR:Q2GDY7 STRING:Q2GDY7 GeneID:3931660
KEGG:nse:NSE_0423 PATRIC:22680905 OMA:ENIESLH
ProtClustDB:CLSK749654 BioCyc:NSEN222891:GHFU-445-MONOMER
Uniprot:Q2GDY7
Length = 636
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 155/398 (38%), Positives = 234/398 (58%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
+ S S V F DVAGIDEA EEL E+V +L+ P+ F K+G K P G LL GPPG GKTL
Sbjct: 146 LLSDRSNKVTFHDVAGIDEAKEELAEIVEFLREPKKFQKLGGKIPKGCLLIGPPGTGKTL 205
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+AKAIAGEA VPF+ ++GS+FVE+ VGVG++R+RD+F++ K N P +IFIDEIDA+ R
Sbjct: 206 LAKAIAGEAKVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCLIFIDEIDAVG-RH 264
Query: 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXX 194
+G+ + ERE TLNQLL+E+DGF+ +GVI +AATN
Sbjct: 265 RGVG-------FGGGNDEREQTLNQLLVEMDGFEANEGVIIIAATNRPDVLDPALLRPGR 317
Query: 195 FDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXX 254
FDR+I I P+ GR +IL++H K+ + +V++S A+ PG++G
Sbjct: 318 FDRQITISIPDIAGRQKILEVHLKKIPTAPNVEVSIIARGTPGFSGADLANLVNESALIA 377
Query: 255 XXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAK 314
+ + + + D + A D++ +G +R+ + + + + A E G A+ S K
Sbjct: 378 ARRNKKVVTNEDFEYARDKILMGMERKSLVMREEEKLLTAYHEAGHAITS--------LK 429
Query: 315 VECCDRI---SIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ 371
+E D I +I+PRG+ L LV RL + + R ++ L V +GGRAAE+VI+G
Sbjct: 430 LEASDPIHKATIIPRGRALG-LVM-RLPEHDRVSFTRAKMHADLIVAMGGRAAEQVIFGD 487
Query: 372 D-TSRASVNYLADASWLARKILTIWNLENPM--VIHGE 406
D T+ + + + A+ LAR ++T W + + +++GE
Sbjct: 488 DKTTSGAASDIKQATHLARSMVTKWGMSEKVGPLLYGE 525
>UNIPROTKB|P37476 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0008233 "peptidase activity" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IDA] [GO:0030428 "cell septum"
evidence=IDA] [GO:0043934 "sporulation" evidence=IMP]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0006950 GO:GO:0051301 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0007049
GO:GO:0030163 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0043934
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0008233
GO:GO:0030428 EMBL:D26185 HOGENOM:HOG000217276 KO:K03798 PIR:E69627
RefSeq:NP_387950.1 ProteinModelPortal:P37476 SMR:P37476
IntAct:P37476 MEROPS:M41.009 EnsemblBacteria:EBBACT00000001428
GeneID:938094 KEGG:bsu:BSU00690 PATRIC:18971613 GenoList:BSU00690
OMA:ENMSYST ProtClustDB:CLSK886567 BioCyc:BSUB:BSU00690-MONOMER
Uniprot:P37476
Length = 637
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 149/388 (38%), Positives = 226/388 (58%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
++++ VKF DVAG DE +EL E+V +LK+P F ++G + P GVLL GPPG GKTL
Sbjct: 150 LYTEEKKRVKFKDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTL 209
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+AKA AGEAGVPF+ ++GS+FVE+ VGVG++R+RDLF+ AK N P +IFIDEIDA+ +R
Sbjct: 210 LAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQR 269
Query: 135 -QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
G+ ERE TLNQLL+E+DGF +G+I +AATN
Sbjct: 270 GAGL---------GGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPG 320
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR+I + P+ GR +LK+HA + ++V+L S A PG++G
Sbjct: 321 RFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALV 380
Query: 254 XXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENA 313
+ + I + D+D+A DR+ GP ++ + + ++ A E G +I +L
Sbjct: 381 AARQNKKKIDARDIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLD----- 435
Query: 314 KVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDT 373
+ + +++IVPRGQ V L E F+ +P+LL ++ LLGGR AEE+I+G+
Sbjct: 436 EADMVHKVTIVPRGQAGGYAVM--LPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGE-V 492
Query: 374 SRASVNYLADASWLARKILTIWNLENPM 401
S + N A+ +AR+++T + + +
Sbjct: 493 STGAHNDFQRATNIARRMVTEFGMSEKL 520
Score = 133 (51.9 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 45/179 (25%), Positives = 90/179 (50%)
Query: 320 RISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVN 379
+++IVPRGQ V L E F+ +P+LL ++ LLGGR AEE+I+G+ S + N
Sbjct: 442 KVTIVPRGQAGGYAVM--LPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGE-VSTGAHN 498
Query: 380 YLADASWLARKILTIWNLENPM--VIHGEPPPWRKKVKFVGPRLDFEGSLYDDYGLTEPP 437
A+ +AR+++T + + + + G+ + F+G + E + Y D
Sbjct: 499 DFQRATNIARRMVTEFGMSEKLGPLQFGQSQGGQV---FLGRDFNNEQN-YSDQ------ 548
Query: 438 VNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNN 496
+ + +D +I + ++++ Y R +L + L + LL + + E+I ++++
Sbjct: 549 IAYEIDQEI----QRIIKECYERAKQILTENRDKLELIAQTLLKVETLDAEQIKHLIDH 603
>UNIPROTKB|Q5LNU8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 150/389 (38%), Positives = 219/389 (56%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
M ++ V F DVAGIDEA EEL+E+V +L+NP+ F ++G K P G LL GPPG GKTL
Sbjct: 145 MLTEKHGRVTFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTL 204
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+A+AIAGEAGVPF+ ++GS+FVE+ VGVG++R+RD+F++AK N P ++FIDEIDA+ R
Sbjct: 205 LARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVG-RH 263
Query: 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXX 194
+G Y ERE TLNQLL+E+DGF+ +GVI LAATN
Sbjct: 264 RGAG-------YGGGNDEREQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGR 316
Query: 195 FDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXX 254
FDR + + P+ KGR +IL +HA K + VDL A+ PG++G
Sbjct: 317 FDRNVTVGNPDIKGREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMA 376
Query: 255 XXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAK 314
G + D ++A D++ +G +RR + L + + A E G A++ L
Sbjct: 377 ARVGRRFVTMEDFENAKDKVMMGAERRSMVLTQDQKEKTAYHEAGHAVVGLAL------- 429
Query: 315 VECCDRI---SIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ 371
CD + +I+PRG L +V L + + R + +L + + G+AAE + YG+
Sbjct: 430 -PMCDPVYKATIIPRGGALGMVV--SLPEMDRLNWHRDECQQKLAMTMAGKAAEILKYGE 486
Query: 372 D-TSRASVNYLADASWLARKILTIWNLEN 399
D S + AS LAR ++ W + +
Sbjct: 487 DHVSNGPAGDIQQASQLARAMVMRWGMSD 515
>TIGR_CMR|SPO_3105 [details] [associations]
symbol:SPO_3105 "ATP-dependent metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 150/389 (38%), Positives = 219/389 (56%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
M ++ V F DVAGIDEA EEL+E+V +L+NP+ F ++G K P G LL GPPG GKTL
Sbjct: 145 MLTEKHGRVTFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTL 204
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+A+AIAGEAGVPF+ ++GS+FVE+ VGVG++R+RD+F++AK N P ++FIDEIDA+ R
Sbjct: 205 LARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVG-RH 263
Query: 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXX 194
+G Y ERE TLNQLL+E+DGF+ +GVI LAATN
Sbjct: 264 RGAG-------YGGGNDEREQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGR 316
Query: 195 FDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXX 254
FDR + + P+ KGR +IL +HA K + VDL A+ PG++G
Sbjct: 317 FDRNVTVGNPDIKGREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMA 376
Query: 255 XXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAK 314
G + D ++A D++ +G +RR + L + + A E G A++ L
Sbjct: 377 ARVGRRFVTMEDFENAKDKVMMGAERRSMVLTQDQKEKTAYHEAGHAVVGLAL------- 429
Query: 315 VECCDRI---SIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ 371
CD + +I+PRG L +V L + + R + +L + + G+AAE + YG+
Sbjct: 430 -PMCDPVYKATIIPRGGALGMVV--SLPEMDRLNWHRDECQQKLAMTMAGKAAEILKYGE 486
Query: 372 D-TSRASVNYLADASWLARKILTIWNLEN 399
D S + AS LAR ++ W + +
Sbjct: 487 DHVSNGPAGDIQQASQLARAMVMRWGMSD 515
>TIGR_CMR|BA_0064 [details] [associations]
symbol:BA_0064 "cell division protein FtsH" species:198094
"Bacillus anthracis str. Ames" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0051301 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0030163 HOGENOM:HOG000217277 TIGRFAMs:TIGR01241 KO:K03798
ProtClustDB:CLSK886567 HSSP:Q9LCZ4 OMA:QINMEEV RefSeq:NP_842633.1
RefSeq:YP_016667.1 RefSeq:YP_026351.1 ProteinModelPortal:Q81VX5
SMR:Q81VX5 IntAct:Q81VX5 DNASU:1086600
EnsemblBacteria:EBBACT00000009752 EnsemblBacteria:EBBACT00000016661
EnsemblBacteria:EBBACT00000022411 GeneID:1086600 GeneID:2819677
GeneID:2851579 KEGG:ban:BA_0064 KEGG:bar:GBAA_0064 KEGG:bat:BAS0064
BioCyc:BANT260799:GJAJ-73-MONOMER BioCyc:BANT261594:GJ7F-75-MONOMER
Uniprot:Q81VX5
Length = 633
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 147/388 (37%), Positives = 227/388 (58%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
+++ V+F DVAG DE +EL E+V +LK+P F ++G + P GVLL GPPG GKTL
Sbjct: 151 LYNDEKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTL 210
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+A+A+AGEAGVPF+ ++GS+FVE+ VGVG++R+RDLF+ AK N P +IFIDEIDA+ +R
Sbjct: 211 LARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQR 270
Query: 135 -QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
G+ ERE TLNQLL+E+DGF +G+I +AATN
Sbjct: 271 GAGL---------GGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPALLRPG 321
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR+I + P+ GR +LK+HA + ++++L + A PG++G
Sbjct: 322 RFDRQITVDRPDVNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALV 381
Query: 254 XXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENA 313
+ + I SD+D+A DR+ GP ++ + + ++ A E G +I +L + A
Sbjct: 382 AARQDKKKIDMSDIDEATDRVIAGPAKKSRVISEKERNIVAFHEAGHTVIGVVL---DEA 438
Query: 314 KVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDT 373
V +++IVPRGQ V L E F +P+LL ++ LLGGR AEE+++G+
Sbjct: 439 DV--VHKVTIVPRGQAGGYAVM--LPKEDRYFMTKPELLDKITGLLGGRVAEEIVFGE-V 493
Query: 374 SRASVNYLADASWLARKILTIWNLENPM 401
S + N A+ +AR+++T + + + +
Sbjct: 494 STGAHNDFQRATGIARRMVTEFGMSDKL 521
Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
Identities = 48/186 (25%), Positives = 91/186 (48%)
Query: 320 RISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVN 379
+++IVPRGQ V L E F +P+LL ++ LLGGR AEE+++G+ S + N
Sbjct: 443 KVTIVPRGQAGGYAVM--LPKEDRYFMTKPELLDKITGLLGGRVAEEIVFGE-VSTGAHN 499
Query: 380 YLADASWLARKILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYDDYGLTEPPVN 439
A+ +AR+++T + + + + G P ++F G + L D+ +E +
Sbjct: 500 DFQRATGIARRMVTEFGMSDKL---G--P-----MQF-GSSQGGQVFLGRDFH-SEQNYS 547
Query: 440 FNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILN-NYP 498
+ +I + ++++ Y R +L + L K LL + + E+I+ + +
Sbjct: 548 DAIAHEIDMEMQTIMKECYARAKQILTDNRDKLDLIAKTLLEVETLDAEQINHLCDYGRL 607
Query: 499 PQTPIS 504
P+ P S
Sbjct: 608 PERPTS 613
>TIGR_CMR|CBU_1352 [details] [associations]
symbol:CBU_1352 "ATP-dependent metalloprotease FtsH"
species:227377 "Coxiella burnetii RSA 493" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HSSP:P28691 HOGENOM:HOG000217276 KO:K03798
MEROPS:M41.001 OMA:RSIIDQC RefSeq:NP_820341.1
ProteinModelPortal:Q83BY5 SMR:Q83BY5 PRIDE:Q83BY5 GeneID:1209258
KEGG:cbu:CBU_1352 PATRIC:17931447 ProtClustDB:CLSK914722
BioCyc:CBUR227377:GJ7S-1342-MONOMER Uniprot:Q83BY5
Length = 647
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 152/391 (38%), Positives = 229/391 (58%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
+ SQ V F DVAG+DEA EE++ELV +L++P F ++G K P GVLL GPPG GKTL
Sbjct: 145 LLSQDQVKVTFDDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKMPCGVLLVGPPGTGKTL 204
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+AKA+AGEA VPF+ ++GS+FVE+ VGVG++R+RD+F +AK P +IFIDEIDA+ R
Sbjct: 205 LAKAVAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKQAPCIIFIDEIDAVGRHR 264
Query: 135 -QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
G+ ERE TLNQLL+E+DGF+ +G+I +AATN
Sbjct: 265 GAGL---------GGGHDEREQTLNQLLVEMDGFEGKEGIIVMAATNRPDVLDPALLRPG 315
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR++ + P+ KGR ILK+H +K+ ++ V S A+ PG++G
Sbjct: 316 RFDRQVVVPLPDIKGREYILKVHMNKLPLAKDVKASVIARGTPGFSGADLANIVNEAALF 375
Query: 254 XXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS-HLLRRYEN 312
+ + + S+ + A D++ +G +RR + + + + A E G A++ H+L E+
Sbjct: 376 AARENKKDVSMSEFERAKDKIMMGAERRSMVMSDDEKKLTAYHEAGHAIVGLHML---EH 432
Query: 313 AKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD 372
V +++I+PRG+ L +F D M +RR + +L L GGR AEE+I+G D
Sbjct: 433 DPVY---KVTIIPRGRALGVTMFLPEHDRYSMTKRRLEC--QLAGLFGGRIAEEIIFGPD 487
Query: 373 --TSRASVNYLADASWLARKILTIWNLENPM 401
T+ AS N + A+ +AR ++T W L +
Sbjct: 488 LVTTGAS-NDIEKATEIARNMVTKWGLSQKL 517
>UNIPROTKB|Q2GFA1 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST
MEROPS:M41.001 ProtClustDB:CLSK749654 RefSeq:YP_507882.1
ProteinModelPortal:Q2GFA1 SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708
KEGG:ech:ECH_1098 PATRIC:20577534
BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
Length = 610
Score = 632 (227.5 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 146/387 (37%), Positives = 227/387 (58%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
+ ++ V F+DVAGIDEA EEL E+V +LK+ + F K+G K P G LL G PG GKTL
Sbjct: 145 LMTENRNKVTFNDVAGIDEAKEELIEIVDFLKHRQRFQKLGGKIPKGCLLIGSPGTGKTL 204
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+A+AIAGEA VPF+ ++GS+FVE+ VGVG++R+RD+F++ K N P +IFIDEIDA+ R
Sbjct: 205 LARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAVG-RH 263
Query: 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXX 194
+GI ERE TLNQLL+E+DGF++ +GVI +AATN
Sbjct: 264 RGIG-------LGGGNDEREQTLNQLLVEMDGFESNEGVIIIAATNRPDVLDSALLRPGR 316
Query: 195 FDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXX 254
FDR++ I P+ GR +I+ +H KV + V++ + A+ PG++G
Sbjct: 317 FDRQVTISIPDINGREKIINVHIKKVPTAPDVNIRTIARGTPGFSGADLANLVNEAALIA 376
Query: 255 XXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAK 314
+ + SD + A D++ +G +R+ + + + + A E G A+I+ + A
Sbjct: 377 ARLNKKIVTMSDFEYARDKVMMGAERKSLMMTEEERRLTAYHEAGHAIIAF----FTEAS 432
Query: 315 VECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD-- 372
+ + +I+PRG++L LV RL + + R +++ L V +GGRAAEE+I+G
Sbjct: 433 -DPIHKATIIPRGRSLG-LVM-RLPESDRVSHTREKMIADLTVAMGGRAAEELIFGYHKV 489
Query: 373 TSRASVNYLADASWLARKILTIWNLEN 399
TS AS + + A+ LA+ ++ W + +
Sbjct: 490 TSGASSD-IKQATDLAKAMVMKWGMSD 515
Score = 292 (107.8 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 93/344 (27%), Positives = 169/344 (49%)
Query: 152 ERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTE 211
ERE TLNQLL+E+DGF++ +GVI +AATN FDR++ I P+ GR +
Sbjct: 274 EREQTLNQLLVEMDGFESNEGVIIIAATNRPDVLDSALLRPGRFDRQVTISIPDINGREK 333
Query: 212 ILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAV 271
I+ +H KV + V++ + A+ PG++G + + SD + A
Sbjct: 334 IINVHIKKVPTAPDVNIRTIARGTPGFSGADLANLVNEAALIAARLNKKIVTMSDFEYAR 393
Query: 272 DRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLS 331
D++ +G +R+ + + + + A E G A+I+ + A + + +I+PRG++L
Sbjct: 394 DKVMMGAERKSLMMTEEERRLTAYHEAGHAIIAF----FTEAS-DPIHKATIIPRGRSLG 448
Query: 332 QLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLAR 389
LV RL + + R +++ L V +GGRAAEE+I+G TS AS + + A+ LA+
Sbjct: 449 -LVM-RLPESDRVSHTREKMIADLTVAMGGRAAEELIFGYHKVTSGASSD-IKQATDLAK 505
Query: 390 KILTIWNLENPM--VIHGEPPPWRKKVKFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIA 447
++ W + + + + H + K + L +L D+ + V L+ +
Sbjct: 506 AMVMKWGMSDKVGPLYHNDD-----KNDTISNNL---ANLIDEE--VKLIVTSALERAKS 555
Query: 448 WRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEID 491
E L ++ LL + +K ++N KE+ +++I+
Sbjct: 556 LLNEHL-ESLHIVAKNLLE-FETLTGEDIKNIINGKELTKDDIE 597
Score = 44 (20.5 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 422 DFEGSLY--DDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVL 479
D G LY DD T ++ NL + I + ++ R +LL H +L K L
Sbjct: 515 DKVGPLYHNDDKNDT---ISNNLANLIDEEVKLIVTSALERAKSLLNEHLESLHIVAKNL 571
Query: 480 LNQKEIGREEIDFILN 495
L + + E+I I+N
Sbjct: 572 LEFETLTGEDIKNIIN 587
>TIGR_CMR|ECH_1098 [details] [associations]
symbol:ECH_1098 "ATP-dependent metalloprotease FtsH"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 GO:GO:0000910
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_507882.1 ProteinModelPortal:Q2GFA1
SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708 KEGG:ech:ECH_1098
PATRIC:20577534 BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
Length = 610
Score = 632 (227.5 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 146/387 (37%), Positives = 227/387 (58%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
+ ++ V F+DVAGIDEA EEL E+V +LK+ + F K+G K P G LL G PG GKTL
Sbjct: 145 LMTENRNKVTFNDVAGIDEAKEELIEIVDFLKHRQRFQKLGGKIPKGCLLIGSPGTGKTL 204
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+A+AIAGEA VPF+ ++GS+FVE+ VGVG++R+RD+F++ K N P +IFIDEIDA+ R
Sbjct: 205 LARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAVG-RH 263
Query: 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXX 194
+GI ERE TLNQLL+E+DGF++ +GVI +AATN
Sbjct: 264 RGIG-------LGGGNDEREQTLNQLLVEMDGFESNEGVIIIAATNRPDVLDSALLRPGR 316
Query: 195 FDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXX 254
FDR++ I P+ GR +I+ +H KV + V++ + A+ PG++G
Sbjct: 317 FDRQVTISIPDINGREKIINVHIKKVPTAPDVNIRTIARGTPGFSGADLANLVNEAALIA 376
Query: 255 XXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAK 314
+ + SD + A D++ +G +R+ + + + + A E G A+I+ + A
Sbjct: 377 ARLNKKIVTMSDFEYARDKVMMGAERKSLMMTEEERRLTAYHEAGHAIIAF----FTEAS 432
Query: 315 VECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD-- 372
+ + +I+PRG++L LV RL + + R +++ L V +GGRAAEE+I+G
Sbjct: 433 -DPIHKATIIPRGRSLG-LVM-RLPESDRVSHTREKMIADLTVAMGGRAAEELIFGYHKV 489
Query: 373 TSRASVNYLADASWLARKILTIWNLEN 399
TS AS + + A+ LA+ ++ W + +
Sbjct: 490 TSGASSD-IKQATDLAKAMVMKWGMSD 515
Score = 292 (107.8 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 93/344 (27%), Positives = 169/344 (49%)
Query: 152 ERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTE 211
ERE TLNQLL+E+DGF++ +GVI +AATN FDR++ I P+ GR +
Sbjct: 274 EREQTLNQLLVEMDGFESNEGVIIIAATNRPDVLDSALLRPGRFDRQVTISIPDINGREK 333
Query: 212 ILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAV 271
I+ +H KV + V++ + A+ PG++G + + SD + A
Sbjct: 334 IINVHIKKVPTAPDVNIRTIARGTPGFSGADLANLVNEAALIAARLNKKIVTMSDFEYAR 393
Query: 272 DRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLS 331
D++ +G +R+ + + + + A E G A+I+ + A + + +I+PRG++L
Sbjct: 394 DKVMMGAERKSLMMTEEERRLTAYHEAGHAIIAF----FTEAS-DPIHKATIIPRGRSLG 448
Query: 332 QLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLAR 389
LV RL + + R +++ L V +GGRAAEE+I+G TS AS + + A+ LA+
Sbjct: 449 -LVM-RLPESDRVSHTREKMIADLTVAMGGRAAEELIFGYHKVTSGASSD-IKQATDLAK 505
Query: 390 KILTIWNLENPM--VIHGEPPPWRKKVKFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIA 447
++ W + + + + H + K + L +L D+ + V L+ +
Sbjct: 506 AMVMKWGMSDKVGPLYHNDD-----KNDTISNNL---ANLIDEE--VKLIVTSALERAKS 555
Query: 448 WRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEID 491
E L ++ LL + +K ++N KE+ +++I+
Sbjct: 556 LLNEHL-ESLHIVAKNLLE-FETLTGEDIKNIINGKELTKDDIE 597
Score = 44 (20.5 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 422 DFEGSLY--DDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVL 479
D G LY DD T ++ NL + I + ++ R +LL H +L K L
Sbjct: 515 DKVGPLYHNDDKNDT---ISNNLANLIDEEVKLIVTSALERAKSLLNEHLESLHIVAKNL 571
Query: 480 LNQKEIGREEIDFILN 495
L + + E+I I+N
Sbjct: 572 LEFETLTGEDIKNIIN 587
>DICTYBASE|DDB_G0284249 [details] [associations]
symbol:DDB_G0284249 "peptidase M41, FtsH
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006461 "protein complex assembly" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0044351 "macropinocytosis" evidence=RCA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0284249 GO:GO:0016021 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0006461 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
EMBL:AAFI02000064 RefSeq:XP_638674.1 ProteinModelPortal:Q54PX1
SMR:Q54PX1 MEROPS:M41.A17 EnsemblProtists:DDB0229917 GeneID:8624503
KEGG:ddi:DDB_G0284249 InParanoid:Q54PX1 OMA:VSIYGMN
ProtClustDB:CLSZ2846729 Uniprot:Q54PX1
Length = 764
Score = 592 (213.5 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 139/363 (38%), Positives = 203/363 (55%)
Query: 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLV 75
F + ++ VKFSDVAG+ EA E++E V +LKNP+ F +G K P G +L GPPG GKTL+
Sbjct: 292 FEKSTSTVKFSDVAGLGEAKVEIEEFVNFLKNPKKFHDIGAKIPRGAILVGPPGTGKTLI 351
Query: 76 AKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR- 134
AKA AGEA VPFY +GS+FVE+ VGVG +R+RDLF++A+ N P ++FIDEIDA+ R
Sbjct: 352 AKATAGEANVPFYSTSGSDFVEMFVGVGPSRVRDLFEQARKNAPCIVFIDEIDAVGRARG 411
Query: 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXX 194
+G F + D ERE TLNQLL+E+DGF K V+ LAATN
Sbjct: 412 KGGFSGSND--------ERENTLNQLLVEMDGFKPLKNVVVLAATNRPDILDKALLRPGR 463
Query: 195 FDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL-PGWTGXXXXXXXXXXXXX 253
FDR+I I P+ K R EI ++H + + + S++ + L PG++G
Sbjct: 464 FDRQITIDNPDLKSREEIFRVHLAALLLDKSINYAERLSKLTPGFSGADIANVCNEAALI 523
Query: 254 XXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENA 313
+ E I D AVDR+ G +++ L + A E G A++S L+
Sbjct: 524 AARRHAEIITLEHFDAAVDRVIGGLEKKNKVLSPTEKRTVAYHEAGHAVVSWFLKHCHPL 583
Query: 314 KVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDT 373
++SIVPRG ++ L + + + + + Q+ + + LGGR AE++ +G T
Sbjct: 584 L-----KVSIVPRG--VAALGYAQYLPKEQFLQNQEQIFDMMCMALGGRVAEQLTFGTIT 636
Query: 374 SRA 376
+ A
Sbjct: 637 TGA 639
Score = 78 (32.5 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 417 VGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTV 476
+GP L ++ D LT+P + + + +LL+ Y RT +L+ H L+
Sbjct: 663 IGP-LSYQKG-QDGSDLTKP-YSEETAEVMDEEVRKLLKSAYDRTTQVLQEHREGLISVA 719
Query: 477 KVLLNQKEIGREEIDFILNNYP 498
+LL ++ I EE++ +L P
Sbjct: 720 NLLLEKEVIHFEEVEAVLGPRP 741
>UNIPROTKB|Q9KU86 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241 HSSP:P28691
KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299 RefSeq:NP_230286.1
ProteinModelPortal:Q9KU86 SMR:Q9KU86 DNASU:2615425 GeneID:2615425
KEGG:vch:VC0637 PATRIC:20080383 ProtClustDB:CLSK874054
Uniprot:Q9KU86
Length = 651
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 143/389 (36%), Positives = 226/389 (58%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
M S+ FSDVAG DEA E+++ELV YL++P F K+G K P GVL+ GPPG GKTL
Sbjct: 145 MMSEDQIKTTFSDVAGCDEAKEDVKELVDYLRDPSRFQKLGGKIPTGVLMVGPPGTGKTL 204
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+AKAIAGEA VPF+ ++GS+FVE+ VGVG++R+RD+F++AK P +IFIDEIDA+ +R
Sbjct: 205 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQR 264
Query: 135 -QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
G+ ERE TLNQ+L+E+DGF+ +G+I +AATN
Sbjct: 265 GAGV---------GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 315
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR++ + P+ +GR +ILK+H KV +++ V+ S A+ PG++G
Sbjct: 316 RFDRQVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARGTPGFSGADLANLVNEAALF 375
Query: 254 XXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENA 313
++ + + A D++ +G +RR + + + + A E G A++ L+ ++
Sbjct: 376 AARGNKRNVSMVEFELAKDKIMMGAERRSMVMSEEIKESTAYHEAGHAVVGRLVPEHDPV 435
Query: 314 KVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD- 372
++SI+PRG+ L ++ L ++ + + L + L GGR AEE+IYG++
Sbjct: 436 Y-----KVSIIPRGRALGVTMY--LPEQDRVSMSKQHLESMISSLYGGRLAEELIYGKEK 488
Query: 373 TSRASVNYLADASWLARKILTIWNLENPM 401
S + N + A+ +ARK++T W +
Sbjct: 489 VSTGASNDIERATEIARKMVTQWGFSEKL 517
>TIGR_CMR|VC_0637 [details] [associations]
symbol:VC_0637 "cell division protein FtsH" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000910 "cytokinesis"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299
RefSeq:NP_230286.1 ProteinModelPortal:Q9KU86 SMR:Q9KU86
DNASU:2615425 GeneID:2615425 KEGG:vch:VC0637 PATRIC:20080383
ProtClustDB:CLSK874054 Uniprot:Q9KU86
Length = 651
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 143/389 (36%), Positives = 226/389 (58%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
M S+ FSDVAG DEA E+++ELV YL++P F K+G K P GVL+ GPPG GKTL
Sbjct: 145 MMSEDQIKTTFSDVAGCDEAKEDVKELVDYLRDPSRFQKLGGKIPTGVLMVGPPGTGKTL 204
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+AKAIAGEA VPF+ ++GS+FVE+ VGVG++R+RD+F++AK P +IFIDEIDA+ +R
Sbjct: 205 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQR 264
Query: 135 -QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
G+ ERE TLNQ+L+E+DGF+ +G+I +AATN
Sbjct: 265 GAGV---------GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 315
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR++ + P+ +GR +ILK+H KV +++ V+ S A+ PG++G
Sbjct: 316 RFDRQVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARGTPGFSGADLANLVNEAALF 375
Query: 254 XXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENA 313
++ + + A D++ +G +RR + + + + A E G A++ L+ ++
Sbjct: 376 AARGNKRNVSMVEFELAKDKIMMGAERRSMVMSEEIKESTAYHEAGHAVVGRLVPEHDPV 435
Query: 314 KVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD- 372
++SI+PRG+ L ++ L ++ + + L + L GGR AEE+IYG++
Sbjct: 436 Y-----KVSIIPRGRALGVTMY--LPEQDRVSMSKQHLESMISSLYGGRLAEELIYGKEK 488
Query: 373 TSRASVNYLADASWLARKILTIWNLENPM 401
S + N + A+ +ARK++T W +
Sbjct: 489 VSTGASNDIERATEIARKMVTQWGFSEKL 517
>TAIR|locus:2157637 [details] [associations]
symbol:VAR1 "VARIEGATED 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA;IDA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010304 "PSII
associated light-harvesting complex II catabolic process"
evidence=RCA;TAS] [GO:0009579 "thylakoid" evidence=IDA] [GO:0010205
"photoinhibition" evidence=IMP] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0007275 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006508 GO:GO:0009941
GO:GO:0004222 GO:GO:0016887 EMBL:AB023032 GO:GO:0010205
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0009535
HOGENOM:HOG000217276 KO:K03798 ProtClustDB:CLSN2688633
GO:GO:0010304 EMBL:AY126987 IPI:IPI00517420 RefSeq:NP_568604.1
UniGene:At.21670 UniGene:At.66720 ProteinModelPortal:Q9FH02
SMR:Q9FH02 STRING:Q9FH02 MEROPS:M41.024 PaxDb:Q9FH02 PRIDE:Q9FH02
EnsemblPlants:AT5G42270.1 GeneID:834232 KEGG:ath:AT5G42270
GeneFarm:4746 TAIR:At5g42270 InParanoid:Q9FH02 OMA:RARASMP
PhylomeDB:Q9FH02 Genevestigator:Q9FH02 GermOnline:AT5G42270
Uniprot:Q9FH02
Length = 704
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 148/376 (39%), Positives = 217/376 (57%)
Query: 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIA 80
TGV F DVAG D+A ELQE+V +LKNP+ + +G K P G LL GPPG GKTL+A+A+A
Sbjct: 245 TGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVA 304
Query: 81 GEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKD 140
GEAGVPF+ A SEFVE+ VGVG++R+RDLF++AK P ++FIDEIDA+ R++G
Sbjct: 305 GEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVG-RQRGAGM- 362
Query: 141 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIR 200
ERE T+NQLL E+DGF GVI LAATN FDR++
Sbjct: 363 ------GGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVT 416
Query: 201 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHE 260
+ P+ GR +ILK+H+ + VD A+ PG+TG + +
Sbjct: 417 VDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARRELK 476
Query: 261 SILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDR 320
I ++ DA++R+ GP+++ + + + A E G A++ L+ Y+ +
Sbjct: 477 EISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVA-----K 531
Query: 321 ISIVPRGQTLSQLVFHRLDD--ESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRA 376
ISI+PRGQ F ++ ES ++ R L +++ V LGGR AEEVI+G + T+ A
Sbjct: 532 ISIIPRGQAGGLTFFAPSEERLESGLYSRS-YLENQMAVALGGRVAEEVIFGDENVTTGA 590
Query: 377 SVNYLADASWLARKIL 392
S +++ S +AR+++
Sbjct: 591 SNDFM-QVSRVARQMV 605
>UNIPROTKB|P0AAI3 [details] [associations]
symbol:ftsH species:83333 "Escherichia coli K-12"
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006508
"proteolysis" evidence=IEA;IDA] [GO:0043273 "CTPase activity"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA;IDA]
[GO:0030145 "manganese ion binding" evidence=IDA] [GO:0016021
"integral to membrane" evidence=IEA;IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0008270 GO:GO:0006508 EMBL:U18997
GO:GO:0004222 GO:GO:0016887 GO:GO:0030145 GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0043273 EMBL:U01376
HOGENOM:HOG000217276 KO:K03798 EMBL:M83138 PIR:S35109
RefSeq:NP_417645.1 RefSeq:YP_491363.1 PDB:1LV7 PDBsum:1LV7
ProteinModelPortal:P0AAI3 SMR:P0AAI3 DIP:DIP-35828N IntAct:P0AAI3
MINT:MINT-1226643 MEROPS:M41.001 PaxDb:P0AAI3 PRIDE:P0AAI3
EnsemblBacteria:EBESCT00000000369 EnsemblBacteria:EBESCT00000000370
EnsemblBacteria:EBESCT00000017485 GeneID:12933986 GeneID:947690
KEGG:ecj:Y75_p3098 KEGG:eco:b3178 PATRIC:32121774 EchoBASE:EB1469
EcoGene:EG11506 OMA:RSIIDQC ProtClustDB:PRK10733
BioCyc:EcoCyc:EG11506-MONOMER BioCyc:ECOL316407:JW3145-MONOMER
BioCyc:MetaCyc:EG11506-MONOMER SABIO-RK:P0AAI3
EvolutionaryTrace:P0AAI3 Genevestigator:P0AAI3 Uniprot:P0AAI3
Length = 644
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 144/390 (36%), Positives = 225/390 (57%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
M ++ F+DVAG DEA EE+ ELV YL+ P F K+G K P GVL+ GPPG GKTL
Sbjct: 141 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTL 200
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+AKAIAGEA VPF+ ++GS+FVE+ VGVG++R+RD+F++AK P +IFIDEIDA+ +R
Sbjct: 201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 260
Query: 135 -QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
G+ ERE TLNQ+L+E+DGF+ +G+I +AATN
Sbjct: 261 GAGL---------GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 311
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR++ + P+ +GR +ILK+H +V ++ +D + A+ PG++G
Sbjct: 312 RFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALF 371
Query: 254 XXXKGHESILSS-DMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYEN 312
+G++ ++S + + A D++ +G +RR + + + A E G A+I L+ ++
Sbjct: 372 AA-RGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDP 430
Query: 313 AKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD 372
+++I+PRG+ L F L + + R +L ++ L GGR AEE+IYG +
Sbjct: 431 VH-----KVTIIPRGRALGVTFF--LPEGDAISASRQKLESQISTLYGGRLAEEIIYGPE 483
Query: 373 -TSRASVNYLADASWLARKILTIWNLENPM 401
S + N + A+ LAR ++T W +
Sbjct: 484 HVSTGASNDIKVATNLARNMVTQWGFSEKL 513
>TIGR_CMR|CPS_3452 [details] [associations]
symbol:CPS_3452 "ATP-dependent metalloprotease FtsH"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 OMA:RSIIDQC
RefSeq:YP_270126.1 ProteinModelPortal:Q47YJ4 SMR:Q47YJ4
STRING:Q47YJ4 GeneID:3519317 KEGG:cps:CPS_3452 PATRIC:21469851
BioCyc:CPSY167879:GI48-3480-MONOMER Uniprot:Q47YJ4
Length = 660
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 144/378 (38%), Positives = 214/378 (56%)
Query: 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84
F+DVAG DEA E++ ELV YL+ P F K+G + P G+LL G PG GKTL+AKAIAGEA
Sbjct: 153 FADVAGCDEAKEDVAELVDYLREPSRFQKLGGRIPSGILLVGQPGTGKTLLAKAIAGEAK 212
Query: 85 VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDH 144
VPF+ ++GS+FVE+ VGVG++R+RD+F++AK P +IFIDEIDA+ R++G
Sbjct: 213 VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG-RQRGAGM----- 266
Query: 145 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAP 204
ERE TLNQ+L+E+DGF+ +GVI +AATN FDR++ + P
Sbjct: 267 --GGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLDPALLRPGRFDRQVTVGLP 324
Query: 205 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILS 264
+ +GR +ILK+H KV + D V A+ PG++G +
Sbjct: 325 DIRGREQILKVHMRKVPLGDDVKAEVIARGTPGFSGADLANLVNEAALCAARTARRVVSM 384
Query: 265 SDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIV 324
+ D A D++ +G +R+ + + + A E G A+I L+ ++ ++SI+
Sbjct: 385 KEFDAAKDKIMMGSERKSMVMSESEREMTAYHEAGHAIIGRLVPDHDPVY-----KVSII 439
Query: 325 PRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD-TSRASVNYLAD 383
PRG+ L ++ L ++ + L + L GGR AEEVIYG D S + N +
Sbjct: 440 PRGRALGVTMY--LPEQDRFSHSKQHLESNISSLYGGRVAEEVIYGSDKVSTGASNDIER 497
Query: 384 ASWLARKILTIWNLENPM 401
A+ +ARK++T W L M
Sbjct: 498 ATNIARKMVTQWGLSEKM 515
>TIGR_CMR|SO_1197 [details] [associations]
symbol:SO_1197 "ATP-dependent metalloprotease FtsH"
species:211586 "Shewanella oneidensis MR-1" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0051301 "cell division" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006200
GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
OMA:RSIIDQC RefSeq:NP_716822.2 ProteinModelPortal:Q8EHM2 SMR:Q8EHM2
GeneID:1169025 KEGG:son:SO_1197 PATRIC:23522048
ProtClustDB:CLSK906146 Uniprot:Q8EHM2
Length = 652
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 159/488 (32%), Positives = 274/488 (56%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
+ S+ F+DVAG DEA EE++ELV YL++P F K+G + P GVL+ GPPG GKTL
Sbjct: 146 LMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTL 205
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+AKAIAGE+ VPF+ ++GS+FVE+ VGVG++R+RD+F++AK + P +IFIDEIDA+ +R
Sbjct: 206 LAKAIAGESKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQR 265
Query: 135 -QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
G+ ERE TLNQ+L+E+DGF+ +G+I +AATN
Sbjct: 266 GAGL---------GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDSALLRPG 316
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR++ + P+ +GR +ILK+H KV +S+ V S A+ PG++G
Sbjct: 317 RFDRQVVVGLPDVRGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALF 376
Query: 254 XXXKGHESILS-SDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYEN 312
+G+ ++ + + A D++ +G +RR + + + A E G A++ L+ ++
Sbjct: 377 AA-RGNRRVVGMEEFERAKDKIMMGAERRSMVMSEAEKEMTAYHEAGHAIVGCLVPEHDP 435
Query: 313 AKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD 372
+++I+PRG+ L F L + + + R +L ++ V GGR AEE+IYG +
Sbjct: 436 VH-----KVTIIPRGRALGVTFF--LPEADAISQSRRKLESQISVAYGGRLAEELIYGTE 488
Query: 373 -TSRASVNYLADASWLARKILTIWNLENPM--VIHGEPPPWRKKVKFVGPRLDFEGSLYD 429
S + + A+ +AR ++T W + + +++ E +V F+G + ++ D
Sbjct: 489 KVSTGASQDIKYATSIARNMVTQWGFSDKLGPLLYAEE---EGEV-FLGRSMGKAKAMSD 544
Query: 430 DYG-LTEPPVNFNLDDDIAWRTEELLRD----MYGRTVTLLRRHHAALLKTVKVLLNQKE 484
+ L + V +D + + R +++L+D ++ L++ L+ + L+N++E
Sbjct: 545 ETATLIDTEVKAFIDKNYS-RAKQILQDNVDILHSMKDALMKYETIDSLQ-IDDLMNRRE 602
Query: 485 IGREEIDF 492
+ R+ D+
Sbjct: 603 V-RQPADW 609
>UNIPROTKB|F1PRV6 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 OMA:HTSHVSA EMBL:AAEX03001169
Ensembl:ENSCAFT00000007090 Uniprot:F1PRV6
Length = 748
Score = 565 (203.9 bits), Expect = 8.8e-63, Sum P(3) = 8.8e-63
Identities = 124/311 (39%), Positives = 186/311 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 312 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 371
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 372 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRI----ESP 427
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GVI + ATN FD ++ +
Sbjct: 428 MHPYS-----RQT-INQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVP 481
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEILK + +K+K SVD A+ G++G G E +
Sbjct: 482 RPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMV 541
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +
Sbjct: 542 TMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 596
Query: 323 IVPRGQTLSQL 333
I+PRG TL +
Sbjct: 597 IMPRGPTLGHV 607
Score = 62 (26.9 bits), Expect = 8.8e-63, Sum P(3) = 8.8e-63
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 428 YDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487
Y D G P ++ +I LLRD Y R +L+ H + LL + +
Sbjct: 679 YSDTGKLSPETQSAIEQEI----RILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDA 734
Query: 488 EEIDFIL 494
+EI +L
Sbjct: 735 KEIQIVL 741
Score = 44 (20.5 bits), Expect = 8.8e-63, Sum P(3) = 8.8e-63
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 2 LIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQ 39
LI + F + + V+F G+D AV+ +Q
Sbjct: 271 LILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQ 308
>UNIPROTKB|Q96TA2 [details] [associations]
symbol:YME1L1 "ATP-dependent zinc metalloprotease YME1L1"
species:9606 "Homo sapiens" [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0006515 "misfolded or incompletely synthesized
protein catabolic process" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0005524 GO:GO:0016020 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0006508 GO:GO:0004222
EMBL:CH471072 EMBL:AL160291 GO:GO:0030163 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
EMBL:AL162272 HOGENOM:HOG000217276 UniGene:Hs.74647 KO:K08955
EMBL:AF151782 EMBL:AJ132637 EMBL:AY358484 EMBL:AK297973
EMBL:BC023507 EMBL:BC024032 IPI:IPI00045946 IPI:IPI00099529
RefSeq:NP_001240795.1 RefSeq:NP_055078.1 RefSeq:NP_647473.1
UniGene:Hs.499145 ProteinModelPortal:Q96TA2 SMR:Q96TA2
IntAct:Q96TA2 STRING:Q96TA2 MEROPS:M41.A20 PhosphoSite:Q96TA2
DMDM:46397258 PaxDb:Q96TA2 PRIDE:Q96TA2 Ensembl:ENST00000326799
Ensembl:ENST00000375972 Ensembl:ENST00000376016 GeneID:10730
KEGG:hsa:10730 UCSC:uc001iti.3 UCSC:uc001itj.3 CTD:10730
GeneCards:GC10M027439 H-InvDB:HIX0127242 HGNC:HGNC:12843 MIM:607472
neXtProt:NX_Q96TA2 PharmGKB:PA37434 HOVERGEN:HBG057127
InParanoid:Q96TA2 OMA:HTSHVSA PhylomeDB:Q96TA2 ChiTaRS:YME1L1
GenomeRNAi:10730 NextBio:40734 ArrayExpress:Q96TA2 Bgee:Q96TA2
CleanEx:HS_YME1L1 Genevestigator:Q96TA2 GermOnline:ENSG00000136758
Uniprot:Q96TA2
Length = 773
Score = 564 (203.6 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 124/311 (39%), Positives = 186/311 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 336 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGE 395
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 396 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRI----ESP 451
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GVI + ATN FD ++ +
Sbjct: 452 MHPYS-----RQT-INQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVP 505
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEILK + +K+K SVD A+ G++G G E +
Sbjct: 506 RPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMV 565
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +
Sbjct: 566 TMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 620
Query: 323 IVPRGQTLSQL 333
I+PRG TL +
Sbjct: 621 IMPRGPTLGHV 631
Score = 62 (26.9 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 428 YDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487
Y D G P ++ +I LLRD Y R +L+ H + LL + +
Sbjct: 703 YSDTGKLSPETQSAIEQEI----RILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDA 758
Query: 488 EEIDFIL 494
+EI +L
Sbjct: 759 KEIQIVL 765
Score = 44 (20.5 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 2 LIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQ 39
LI + F + + V+F G+D AV+ +Q
Sbjct: 295 LILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQ 332
>TIGR_CMR|DET_0391 [details] [associations]
symbol:DET_0391 "ATP-dependent metalloprotease FtsH"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 OMA:LEIIAMR MEROPS:M41.021
RefSeq:YP_181136.1 ProteinModelPortal:Q3Z9G3 SMR:Q3Z9G3
STRING:Q3Z9G3 GeneID:3230280 KEGG:det:DET0391 PATRIC:21607849
ProtClustDB:CLSK837509 BioCyc:DETH243164:GJNF-391-MONOMER
Uniprot:Q3Z9G3
Length = 608
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 147/388 (37%), Positives = 224/388 (57%)
Query: 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
+F+ + F++VAG+DEA +E+ E+V +LK+ E F +G + P G+LL GPPG GKTL
Sbjct: 148 LFNMDKPTITFANVAGVDEAKQEVGEVVEFLKSREKFQALGARIPKGILLIGPPGTGKTL 207
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+AKAIAGEAGVPF+ ++GSEFVE+ VGVG++R+RDLF +AK N P +IFIDEIDA+ +R
Sbjct: 208 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRQR 267
Query: 135 -QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
G+ ERE TLNQ+L+E+DGFDT VI +AATN
Sbjct: 268 GAGL---------GGGHDEREQTLNQILVEMDGFDTDTSVIVIAATNRPDILDPALLRPG 318
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR++ + P+ GR ILKIHA ++D+V+L + AK G++G
Sbjct: 319 RFDRRVVLDKPDITGREAILKIHAKGKPLADTVNLENLAKQTVGFSGADLANLLNEAAIL 378
Query: 254 XXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENA 313
K + + + D+++++DR+ GP+R+ + Q + A E G ++ LR + A
Sbjct: 379 AARKNRKVVETEDLEESIDRVIAGPERKSRRISTQEKEVTAYHETGHGLV---LRLVQGA 435
Query: 314 KVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDT 373
+ +ISIV RG TL +L +E R Q + LL G AEE+ + + +
Sbjct: 436 --DPVHKISIVARGMTLGHT--RQLPNEDRYLMTRSQFKAMMAGLLAGYVAEELTFKELS 491
Query: 374 SRASVNYLADASWLARKILTIWNLENPM 401
+ AS + L A+ +A K++T + + + +
Sbjct: 492 TGASDD-LRRATDIAHKMVTSYGMSDKL 518
>SGD|S000004695 [details] [associations]
symbol:YTA12 "Component of the mitochondrial inner membrane
m-AAA protease" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS;IDA;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0006508 "proteolysis" evidence=IEA;IMP]
[GO:0016020 "membrane" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;IDA]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=IEA;IMP] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0045041 "protein import into mitochondrial
intermembrane space" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006461 "protein complex assembly" evidence=IMP]
[GO:0006465 "signal peptide processing" evidence=IMP] [GO:0005745
"m-AAA complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0031966 "mitochondrial membrane" evidence=IEA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 SGD:S000004695 EMBL:U09358 GO:GO:0005524
GO:GO:0006461 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0008237 GO:GO:0004222 GO:GO:0016887 EMBL:BK006946
GO:GO:0030163 EMBL:Z49259 eggNOG:COG0465
GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0097002 GO:GO:0045041
GO:GO:0006465 EMBL:X81068 EMBL:AY693099 PIR:S54465
RefSeq:NP_013807.1 ProteinModelPortal:P40341 SMR:P40341
DIP:DIP-889N IntAct:P40341 MINT:MINT-596896 STRING:P40341
MEROPS:M41.003 PaxDb:P40341 PeptideAtlas:P40341
EnsemblFungi:YMR089C GeneID:855114 KEGG:sce:YMR089C CYGD:YMR089c
OMA:NFSGAND NextBio:978455 Genevestigator:P40341 GermOnline:YMR089C
Uniprot:P40341
Length = 825
Score = 596 (214.9 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 141/361 (39%), Positives = 203/361 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
+KF DVAG DEA EE+ E V +LK P ++KMG K P G +L GPPG GKTL+AKA AGE
Sbjct: 345 IKFKDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKATAGE 404
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
AGVPFY ++GSEFVE+ VGVG+AR+RDLFK A+ N PS++FIDEIDA+ RQ K
Sbjct: 405 AGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQ---KGN- 460
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
++ A ERE TLNQ+L+E+DGF V+ LA TN FDR I I
Sbjct: 461 ---FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINID 517
Query: 203 APNAKGRTEILKIHASKVKMSDSV-DLSSYAKNL-PGWTGXXXXXXXXXXXXXXXXKGHE 260
P +GR I +H +K++ + DL + L PG++G +
Sbjct: 518 KPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDED 577
Query: 261 SILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDR 320
++ + + A++R+ G +R+ L + + A E G A+ L+ Y + + +
Sbjct: 578 AVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLK-YADPLL----K 632
Query: 321 ISIVPRGQ-TLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVN 379
+SI+PRGQ L + L + ++ + QL R+ + LGGR +EE+ + TS AS +
Sbjct: 633 VSIIPRGQGALGYAQY--LPGDIFLLTEQ-QLKDRMTMSLGGRVSEELHFPSVTSGASDD 689
Query: 380 Y 380
+
Sbjct: 690 F 690
Score = 58 (25.5 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 429 DDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGRE 488
DD LT+P + D I ++++ + R LL+ + K +VLL ++ + RE
Sbjct: 719 DDSDLTKP-FSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTRE 777
Query: 489 EIDFILNNYP 498
++ +L P
Sbjct: 778 DMIDLLGKRP 787
>UNIPROTKB|F1RVK1 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008283 "cell proliferation" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0005743
GO:GO:0008283 GO:GO:0004222 GO:GO:0006515 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 GeneTree:ENSGT00550000074836
OMA:HTSHVSA EMBL:FP016148 Ensembl:ENSSSCT00000012110 Uniprot:F1RVK1
Length = 768
Score = 565 (203.9 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 124/311 (39%), Positives = 186/311 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 331 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 390
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 391 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRI----ESP 446
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GVI + ATN FD ++ +
Sbjct: 447 MHPYS-----RQT-INQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVP 500
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEILK + +K+K SVD A+ G++G G E +
Sbjct: 501 RPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMV 560
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +
Sbjct: 561 TMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 615
Query: 323 IVPRGQTLSQL 333
I+PRG TL +
Sbjct: 616 IMPRGPTLGHV 626
Score = 318 (117.0 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 77/248 (31%), Positives = 133/248 (53%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
T+NQLL E+DGF +GVI + ATN FD ++ + P+ KGRTEILK
Sbjct: 454 TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKW 513
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
+ +K+K SVD A+ G++G G E + +++ + D++
Sbjct: 514 YLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL 573
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
+GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +I+PRG TL +
Sbjct: 574 MGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKATIMPRGPTLGHVSL 628
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLARKILT 393
L + E R QLL ++ V +GGR AEE+I+G D T+ AS ++ +A+ +A++++T
Sbjct: 629 --LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDF-DNATKIAKRMVT 685
Query: 394 IWNLENPM 401
+ + +
Sbjct: 686 KFGMSEKL 693
Score = 62 (26.9 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 428 YDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487
Y D G P ++ +I LLRD Y R +L+ H + LL + +
Sbjct: 698 YSDTGKLSPETQSAIEQEI----RILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDA 753
Query: 488 EEIDFIL 494
+EI +L
Sbjct: 754 KEIQIVL 760
Score = 39 (18.8 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 23 VKFSDVAGIDEAVEELQ 39
V+F G+D AV+ +Q
Sbjct: 311 VRFRTTTGLDSAVDPVQ 327
>UNIPROTKB|A6QR12 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008283 "cell proliferation" evidence=ISS] [GO:0005743
"mitochondrial inner membrane" evidence=ISS] [GO:0007005
"mitochondrion organization" evidence=ISS] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0005743
GO:GO:0008283 GO:GO:0004222 GO:GO:0006515 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005 HOGENOM:HOG000217276
GeneTree:ENSGT00550000074836 KO:K08955 MEROPS:M41.A20 CTD:10730
HOVERGEN:HBG057127 OMA:HTSHVSA OrthoDB:EOG4KH2TK EMBL:DAAA02035354
EMBL:BC150071 IPI:IPI00866889 RefSeq:NP_001095320.1 UniGene:Bt.1786
SMR:A6QR12 STRING:A6QR12 Ensembl:ENSBTAT00000021868 GeneID:505118
KEGG:bta:505118 InParanoid:A6QR12 NextBio:20866987 Uniprot:A6QR12
Length = 717
Score = 565 (203.9 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 124/311 (39%), Positives = 186/311 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRI----ESP 393
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GVI + ATN FD ++ +
Sbjct: 394 MHPYS-----RQT-INQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVP 447
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEILK + +K+K SVD A+ G++G G E +
Sbjct: 448 RPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMV 507
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +
Sbjct: 508 TMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 562
Query: 323 IVPRGQTLSQL 333
I+PRG TL +
Sbjct: 563 IMPRGPTLGHV 573
Score = 312 (114.9 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 75/249 (30%), Positives = 130/249 (52%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
T+NQLL E+DGF +GVI + ATN FD ++ + P+ KGRTEILK
Sbjct: 401 TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKW 460
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
+ +K+K SVD A+ G++G G E + +++ + D++
Sbjct: 461 YLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL 520
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
+GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +I+PRG TL +
Sbjct: 521 MGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKATIMPRGPTLGHVSL 575
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD---TSRASVNYLADASWLARKIL 392
L + E R QLL ++ V +GGR AEE+I+G D T + + +A+ +A++++
Sbjct: 576 --LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGSDHITTGYCASSDFDNATKIAKRMV 633
Query: 393 TIWNLENPM 401
T + + +
Sbjct: 634 TKFGMSEKL 642
Score = 62 (26.9 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 428 YDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487
Y D G P ++ +I LLRD Y R +L+ H + LL + +
Sbjct: 647 YSDTGKLSPETQSAIEQEI----RILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDA 702
Query: 488 EEIDFIL 494
+EI +L
Sbjct: 703 KEIQIVL 709
Score = 39 (18.8 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 23 VKFSDVAGIDEAVEELQ 39
V+F G+D AV+ +Q
Sbjct: 258 VRFRTTTGLDSAVDPVQ 274
>MGI|MGI:1351651 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0006515
"misfolded or incompletely synthesized protein catabolic process"
evidence=ISO] [GO:0007005 "mitochondrion organization"
evidence=ISO] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008283
"cell proliferation" evidence=ISO] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
MGI:MGI:1351651 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0004222 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
HOGENOM:HOG000217276 GeneTree:ENSGT00550000074836 KO:K08955
CTD:10730 HOVERGEN:HBG057127 OMA:HTSHVSA EMBL:AF090430
EMBL:AY136286 EMBL:AY136287 EMBL:AK079175 EMBL:BC007128
IPI:IPI00136555 RefSeq:NP_038799.1 UniGene:Mm.23335
ProteinModelPortal:O88967 SMR:O88967 STRING:O88967
PhosphoSite:O88967 PaxDb:O88967 PRIDE:O88967
Ensembl:ENSMUST00000028117 GeneID:27377 KEGG:mmu:27377
InParanoid:O88967 OrthoDB:EOG4KH2TK NextBio:305300 Bgee:O88967
CleanEx:MM_YME1L1 Genevestigator:O88967
GermOnline:ENSMUSG00000026775 Uniprot:O88967
Length = 715
Score = 564 (203.6 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 124/311 (39%), Positives = 186/311 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRI----ESP 393
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GVI + ATN FD ++ +
Sbjct: 394 MHPYS-----RQT-INQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVP 447
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEILK + +K+K SVD A+ G++G G E +
Sbjct: 448 RPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMV 507
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +
Sbjct: 508 TMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 562
Query: 323 IVPRGQTLSQL 333
I+PRG TL +
Sbjct: 563 IMPRGPTLGHV 573
Score = 58 (25.5 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 428 YDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487
Y D G P ++ +I LLR+ Y R +L+ H + LL + +
Sbjct: 645 YSDTGKLSPETQSAIEQEI----RILLRESYERAKHILKTHAKEHKNLAEALLTYETLDA 700
Query: 488 EEIDFIL 494
+EI +L
Sbjct: 701 KEIQIVL 707
Score = 44 (20.5 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 2 LIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQ 39
LI + F + + V+F G+D AV+ +Q
Sbjct: 237 LILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQ 274
>UNIPROTKB|G3V886 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382 RGD:620764
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 KO:K08955 MEROPS:M41.A20 OMA:HTSHVSA
UniGene:Rn.8153 EMBL:CH474100 RefSeq:XP_003751780.1
Ensembl:ENSRNOT00000023395 GeneID:100910779 KEGG:rno:100910779
Uniprot:G3V886
Length = 715
Score = 564 (203.6 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 124/311 (39%), Positives = 186/311 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRI----ESP 393
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GVI + ATN FD ++ +
Sbjct: 394 MHPYS-----RQT-INQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVP 447
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEILK + +K+K SVD A+ G++G G E +
Sbjct: 448 RPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMV 507
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +
Sbjct: 508 TMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 562
Query: 323 IVPRGQTLSQL 333
I+PRG TL +
Sbjct: 563 IMPRGPTLGHV 573
Score = 58 (25.5 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 428 YDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487
Y D G P ++ +I LLR+ Y R +L+ H + LL + +
Sbjct: 645 YSDTGKLSPETQSAIEQEI----RILLRESYERAKHILKTHAKEHKNLAEALLTYETLDA 700
Query: 488 EEIDFIL 494
+EI +L
Sbjct: 701 KEIQIVL 707
Score = 44 (20.5 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 2 LIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQ 39
LI + F + + V+F G+D AV+ +Q
Sbjct: 237 LILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQ 274
>TAIR|locus:2075581 [details] [associations]
symbol:ftsh7 "FTSH protease 7" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
GO:GO:0009535 EMBL:AL133292 GO:GO:0004176 HOGENOM:HOG000217276
KO:K03798 EMBL:AY099737 EMBL:BT000368 IPI:IPI00522102 PIR:T45642
RefSeq:NP_566889.1 UniGene:At.43767 ProteinModelPortal:Q9SD67
SMR:Q9SD67 MEROPS:M41.A04 PaxDb:Q9SD67 PRIDE:Q9SD67
EnsemblPlants:AT3G47060.1 GeneID:823859 KEGG:ath:AT3G47060
GeneFarm:2514 TAIR:At3g47060 InParanoid:Q9SD67 OMA:SNQVQKV
PhylomeDB:Q9SD67 ProtClustDB:CLSN2689036 Genevestigator:Q9SD67
Uniprot:Q9SD67
Length = 802
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 150/384 (39%), Positives = 212/384 (55%)
Query: 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVA 76
S G + F+DVAG+DEA EEL+E+V +L+NPE + ++G +PP GVLL G PG GKTL+A
Sbjct: 316 SGGGETITFADVAGVDEAKEELEEIVEFLRNPEKYVRLGARPPRGVLLVGLPGTGKTLLA 375
Query: 77 KAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQG 136
KA+AGEA VPF + SEFVE+ VG+G++R+RDLF RAK PS+IFIDEIDA+A R G
Sbjct: 376 KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 435
Query: 137 IFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFD 196
F+ + ERE TLNQLL E+DGFD+ VI L ATN FD
Sbjct: 436 KFR-------MGSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFD 488
Query: 197 RKIRIRAPNAKGRTEILKIHASK--VKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXX 254
R + + P+ GR IL++H SK + + D V+L S A G+TG
Sbjct: 489 RVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLA 548
Query: 255 XXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAK 314
K ++ D AV+R G +++ L ++ A E G A++ + +
Sbjct: 549 GRKNKTNVEKIDFIQAVERSIAGIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQ 608
Query: 315 VECCDRISIVPR-GQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDT 373
+++SI+PR G L ++ Y+ +LL RL LLGGRAAEEV+Y
Sbjct: 609 PRV-EKLSILPRTGGALGFTYIPPTSEDRYLLFI-DELLGRLVTLLGGRAAEEVVYSGRI 666
Query: 374 SRASVNYLADASWLARKILTIWNL 397
S + + + A+ +A K + + L
Sbjct: 667 STGAFDDIRRATDMAYKAVAEYGL 690
>UNIPROTKB|P0C5C0 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0006508 "proteolysis" evidence=IMP;IDA] [GO:0006979 "response
to oxidative stress" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IMP] [GO:0040007
"growth" evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0040007 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
EMBL:BX842583 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0010468
HOGENOM:HOG000217276 KO:K03798 PIR:C70956 RefSeq:NP_218127.1
RefSeq:NP_338259.1 RefSeq:YP_006517099.1 ProteinModelPortal:P0C5C0
SMR:P0C5C0 PRIDE:P0C5C0 EnsemblBacteria:EBMYCT00000001212
EnsemblBacteria:EBMYCT00000069111 GeneID:13317218 GeneID:885732
GeneID:926520 KEGG:mtc:MT3714 KEGG:mtu:Rv3610c KEGG:mtv:RVBD_3610c
PATRIC:18129921 TubercuList:Rv3610c OMA:RSEMIAR
ProtClustDB:CLSK792593 Uniprot:P0C5C0
Length = 760
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 143/378 (37%), Positives = 217/378 (57%)
Query: 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84
F+DVAG+DEAVEEL E+ +L+NP + +G K P GVLL GPPG GKTL+A+A+AGEAG
Sbjct: 162 FADVAGVDEAVEELYEIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAG 221
Query: 85 VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTD 143
VPF+ ++GS+FVE+ VGVG++R+RDLF++AK N P +IF+DEIDA+ +R G+
Sbjct: 222 VPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGL------ 275
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
ERE TLNQLL+E+DGF GVI +AATN FDR+I +
Sbjct: 276 ---GGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSN 332
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
P+ GR +L++H+ M+ DL AK G TG + I
Sbjct: 333 PDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVIT 392
Query: 264 SSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISI 323
+++AVDR+ GP+R+G + Q + A E G H L + +E +++I
Sbjct: 393 GPALEEAVDRVIGGPRRKGRIISEQEKKITAYHEGG-----HTLAAWAMPDIEPIYKVTI 447
Query: 324 VPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLAD 383
+ RG+T V + +E R +++ +L +GGRAAEE+++ + T+ A V+ +
Sbjct: 448 LARGRTGGHAV--AVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREPTTGA-VSDIEQ 504
Query: 384 ASWLARKILTIWNLENPM 401
A+ +AR ++T + + + +
Sbjct: 505 ATKIARSMVTEFGMSSKL 522
>UNIPROTKB|Q2GIT4 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
Uniprot:Q2GIT4
Length = 611
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 144/379 (37%), Positives = 224/379 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F DVAGI+EA EEL E+V +LK+ + F K+G K P G LL G PG GKTL+A+AIAGE
Sbjct: 155 VTFDDVAGIEEAKEELIEIVDFLKHRQKFTKLGGKIPKGCLLIGSPGTGKTLLARAIAGE 214
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF+ ++GS+FVE+ VGVG++R+RD+F++ K + P +IF+DEIDA+ R +GI
Sbjct: 215 ANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKHAPCIIFVDEIDAVG-RHRGIG---- 269
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
ERE TLNQLL+E+DGF++ +GV+ +AATN FDR++ I
Sbjct: 270 ---LGGGNDEREQTLNQLLVEMDGFESNEGVVIIAATNRPDVLDPALLRPGRFDRQVTIS 326
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ GR +I+ +HA KV ++ VDL A+ PG++G + +
Sbjct: 327 IPDINGREKIIAVHAKKVPLAPDVDLRVIARGTPGFSGADLANLVNEAALIAARLDKKIV 386
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
D + A D++ +G +R+ + + + + A E G A+++ + N + + +
Sbjct: 387 TMCDFEYARDKVMMGAERKSMVMREEERRLTAYHEAGHAVVA-----FHNPASDPIHKAT 441
Query: 323 IVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNY 380
I+PRG++L LV RL + + R ++L L V +GGRAAEE+I+G + TS AS +
Sbjct: 442 IIPRGRSLG-LVM-RLPETDRVSHTREKMLADLTVAMGGRAAEELIFGYNKVTSGASSD- 498
Query: 381 LADASWLARKILTIWNLEN 399
+ A+ LA+ ++ W + +
Sbjct: 499 IKQATDLAKSMVMKWGMSD 517
>TIGR_CMR|APH_1179 [details] [associations]
symbol:APH_1179 "ATP-dependent metalloprotease FtsH"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 GO:GO:0000910 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
Uniprot:Q2GIT4
Length = 611
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 144/379 (37%), Positives = 224/379 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F DVAGI+EA EEL E+V +LK+ + F K+G K P G LL G PG GKTL+A+AIAGE
Sbjct: 155 VTFDDVAGIEEAKEELIEIVDFLKHRQKFTKLGGKIPKGCLLIGSPGTGKTLLARAIAGE 214
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF+ ++GS+FVE+ VGVG++R+RD+F++ K + P +IF+DEIDA+ R +GI
Sbjct: 215 ANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKHAPCIIFVDEIDAVG-RHRGIG---- 269
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
ERE TLNQLL+E+DGF++ +GV+ +AATN FDR++ I
Sbjct: 270 ---LGGGNDEREQTLNQLLVEMDGFESNEGVVIIAATNRPDVLDPALLRPGRFDRQVTIS 326
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ GR +I+ +HA KV ++ VDL A+ PG++G + +
Sbjct: 327 IPDINGREKIIAVHAKKVPLAPDVDLRVIARGTPGFSGADLANLVNEAALIAARLDKKIV 386
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
D + A D++ +G +R+ + + + + A E G A+++ + N + + +
Sbjct: 387 TMCDFEYARDKVMMGAERKSMVMREEERRLTAYHEAGHAVVA-----FHNPASDPIHKAT 441
Query: 323 IVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNY 380
I+PRG++L LV RL + + R ++L L V +GGRAAEE+I+G + TS AS +
Sbjct: 442 IIPRGRSLG-LVM-RLPETDRVSHTREKMLADLTVAMGGRAAEELIFGYNKVTSGASSD- 498
Query: 381 LADASWLARKILTIWNLEN 399
+ A+ LA+ ++ W + +
Sbjct: 499 IKQATDLAKSMVMKWGMSD 517
>DICTYBASE|DDB_G0272120 [details] [associations]
symbol:rcaA "peptidase M41, FtsH domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0272120 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GenomeReviews:CM000151_GR GO:GO:0004222
EMBL:AAFI02000008 GO:GO:0030163 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 ProtClustDB:CLSZ2846729 RefSeq:XP_645267.1
ProteinModelPortal:Q75JS8 SMR:Q75JS8 STRING:Q75JS8
EnsemblProtists:DDB0185211 GeneID:8618433 KEGG:ddi:DDB_G0272120
InParanoid:Q75JS8 OMA:ERTIVAH Uniprot:Q75JS8
Length = 844
Score = 580 (209.2 bits), Expect = 2.3e-61, Sum P(2) = 2.3e-61
Identities = 137/357 (38%), Positives = 198/357 (55%)
Query: 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84
F DVAG+DEA EE+ E V +LK+P + K+G + P G +L GPPG GKTL+AKA AGEAG
Sbjct: 353 FKDVAGMDEAKEEIMEFVSFLKDPSRYKKLGARIPKGAILSGPPGTGKTLLAKATAGEAG 412
Query: 85 VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA-TRRQGIFKDTTD 143
V FY ++GS+F+E+ VGVG +R+RDLFK A+ N P ++FIDEIDA+ R +G F
Sbjct: 413 VNFYTISGSDFIEMFVGVGPSRVRDLFKEARANTPCIVFIDEIDAVGRARSRGGF----- 467
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+N ERE TLNQLL+E+DGF + GV+ A TN FDR+I +
Sbjct: 468 --HN---DERENTLNQLLVEMDGFSSTSGVVVFAGTNRSDVLDPALLRPGRFDRQIYVGK 522
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXKGH 259
P+ KGR +I +H +K+ ++ AK L PG++G K
Sbjct: 523 PDIKGRKDIFMVHLKNIKLDG--EMEEIAKKLATLTPGFSGADIANVCNEGALVAARKDA 580
Query: 260 ESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCD 319
S ++A++R+ VG KR L + ++ A E G A++ L +
Sbjct: 581 TSANFDHFEEAIERVLVGLKRENRVLSPEERTIVAHHEAGHAVVGWFLEHTDPLL----- 635
Query: 320 RISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SIVPRG ++ D+ Y++ R QL R+ V LGGR AE +I+ + ++ A
Sbjct: 636 KVSIVPRGSGTLGFAQYQPKDQ-YLYTRE-QLFDRICVSLGGRIAESIIFDRISTGA 690
Score = 70 (29.7 bits), Expect = 2.3e-61, Sum P(2) = 2.3e-61
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 442 LDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP--P 499
+D++I ++ D Y +T LL L+K +LL ++ I R+++ IL P
Sbjct: 740 IDEEI----RRMVNDAYSKTTQLLHEKKELLIKLATILLEKEVIQRDDLRTILGPRPYGE 795
Query: 500 QTPISRLL-EEEN 511
QT + L E EN
Sbjct: 796 QTTWAELTGETEN 808
>RGD|620764 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO;ISS] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=ISO;ISS]
[GO:0007005 "mitochondrion organization" evidence=ISO;ISS]
[GO:0008283 "cell proliferation" evidence=ISO;ISS] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 RGD:620764 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0004222 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
HOGENOM:HOG000217276 MEROPS:M41.A20 HOVERGEN:HBG057127
OrthoDB:EOG4KH2TK EMBL:AF151784 IPI:IPI00206065 UniGene:Rn.8153
ProteinModelPortal:Q925S8 SMR:Q925S8 MINT:MINT-4611841
STRING:Q925S8 PRIDE:Q925S8 UCSC:RGD:620764 InParanoid:Q925S8
Genevestigator:Q925S8 GermOnline:ENSRNOG00000017100 Uniprot:Q925S8
Length = 715
Score = 554 (200.1 bits), Expect = 3.3e-61, Sum P(3) = 3.3e-61
Identities = 123/311 (39%), Positives = 184/311 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LF+ AK N P VIFIDE+D++ +R +
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRI----EFP 393
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T + QLL E+DGF +GVI + ATN FD ++ +
Sbjct: 394 MHPYS-----RQTII-QLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVP 447
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEILK + +K+K SVD A+ G++G G E +
Sbjct: 448 RPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMV 507
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +
Sbjct: 508 TMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 562
Query: 323 IVPRGQTLSQL 333
I+PRG TL +
Sbjct: 563 IMPRGPTLGHV 573
Score = 58 (25.5 bits), Expect = 3.3e-61, Sum P(3) = 3.3e-61
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 428 YDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487
Y D G P ++ +I LLR+ Y R +L+ H + LL + +
Sbjct: 645 YSDTGKLSPETQSAIEQEI----RILLRESYERAKHILKTHAKEHKNLAEALLTYETLDA 700
Query: 488 EEIDFIL 494
+EI +L
Sbjct: 701 KEIQIVL 707
Score = 44 (20.5 bits), Expect = 3.3e-61, Sum P(3) = 3.3e-61
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 2 LIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQ 39
LI + F + + V+F G+D AV+ +Q
Sbjct: 237 LILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQ 274
>CGD|CAL0004443 [details] [associations]
symbol:orf19.2057 species:5476 "Candida albicans" [GO:0005745
"m-AAA complex" evidence=IEA] [GO:0097002 "mitochondrial inner
boundary membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 CGD:CAL0004443 GO:GO:0016021
GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 EMBL:AACQ01000031 EMBL:AACQ01000030
MEROPS:M41.003 RefSeq:XP_719505.1 RefSeq:XP_719629.1
ProteinModelPortal:Q5AD10 SMR:Q5AD10 GeneID:3638753 GeneID:3638884
KEGG:cal:CaO19.2057 KEGG:cal:CaO19.9604 Uniprot:Q5AD10
Length = 846
Score = 602 (217.0 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 142/358 (39%), Positives = 200/358 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
+KF DVAG+ EA +E+ E V++L+NPE ++K+G K P G +L GPPG GKTL+AKA AGE
Sbjct: 370 IKFKDVAGMAEAKQEVMEFVKFLQNPEKYEKLGAKIPRGAILSGPPGTGKTLLAKATAGE 429
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
AGVPFY ++GSEFVE+ VGVG++R+RDLFK A+ N PS++F+DEIDA+ +R K
Sbjct: 430 AGVPFYSVSGSEFVEMFVGVGASRVRDLFKTARENAPSIVFVDEIDAIGKQRS---KGNA 486
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A ERETTLNQLL+E+DGFDT V+ LA TN FDR + I
Sbjct: 487 ----TGANDERETTLNQLLVEMDGFDTSDHVVVLAGTNRPDILDRALMRPGRFDRHVHID 542
Query: 203 APNAKGRTEILKIHASKVKMSDSVD--LSSYAKNL-PGWTGXXXXXXXXXXXXXXXXKGH 259
P GR EI +H K+ + +D LS L PG++G
Sbjct: 543 NPELLGRKEIFDVHLQKITLQKDIDPDLSGRLAALTPGFSGADIANVCNEAALIAARYNA 602
Query: 260 ESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCD 319
E + + A++R+ G +++ L + Q A E G A+ L+ Y + +
Sbjct: 603 EFVTLRHFELAIERVIGGVEKKSKLLNPEEQKIVAYHEAGHAICGWYLK-YAHPLL---- 657
Query: 320 RISIVPRGQ-TLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRGQ L + L + Y+ QL R+ + LGGR +EE+ + TS A
Sbjct: 658 KVSIIPRGQGALGYAQY--LPPDQYLMSTL-QLYDRMIMTLGGRVSEELHFASVTSGA 712
Score = 42 (19.8 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 451 EELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP-PQT 501
+ ++ D Y + LL + + LL ++ I RE++ +L P P+T
Sbjct: 767 QRIVSDCYQKCKQLLTEKSKEVELVAQELLKKEFITREDMIRLLGKRPFPET 818
>TAIR|locus:2154568 [details] [associations]
symbol:ftsh9 "FTSH protease 9" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0009941 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 EMBL:AB016885
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798
ProtClustDB:CLSN2689036 EMBL:AY059856 IPI:IPI00541670
RefSeq:NP_568892.1 UniGene:At.7754 ProteinModelPortal:Q9FIM2
SMR:Q9FIM2 STRING:Q9FIM2 MEROPS:M41.A03 PaxDb:Q9FIM2 PRIDE:Q9FIM2
EnsemblPlants:AT5G58870.1 GeneID:836004 KEGG:ath:AT5G58870
GeneFarm:2516 TAIR:At5g58870 InParanoid:Q9FIM2 OMA:SSKRGEN
PhylomeDB:Q9FIM2 Genevestigator:Q9FIM2 Uniprot:Q9FIM2
Length = 806
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 149/382 (39%), Positives = 216/382 (56%)
Query: 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKA 78
G T + F+DVAG+DEA EEL+E+V +LKNP+ + ++G +PP GVLL G PG GKTL+AKA
Sbjct: 323 GET-ITFADVAGVDEAKEELEEIVEFLKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKA 381
Query: 79 IAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 138
+AGE+ VPF + SEFVE+ VG+G++R+RDLF RAK PS+IFIDEIDA+A R G F
Sbjct: 382 VAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKF 441
Query: 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
+ ++ ERE TLNQLL E+DGFD+ VI L ATN FDR
Sbjct: 442 RMVSN-------DEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRV 494
Query: 199 IRIRAPNAKGRTEILKIHASK--VKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXX 256
+ + +P+ GR ILK+H SK + + D V+L+S A G+TG
Sbjct: 495 VTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGR 554
Query: 257 KGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVE 316
K ++ D AV+R G +++ L ++ A E G A++ + + +
Sbjct: 555 KSKMTVDKIDFIHAVERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSR 614
Query: 317 CCDRISIVPR-GQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSR 375
+++SI+PR G L ++ Y+ +L RL LLGGRAAEEV+Y S
Sbjct: 615 V-EKLSILPRSGGALGFTYIPPTHEDRYLLFI-DELHGRLVTLLGGRAAEEVVYSGRIST 672
Query: 376 ASVNYLADASWLARKILTIWNL 397
+++ + A+ +A K + + L
Sbjct: 673 GALDDIRRATDMAYKAVAEYGL 694
Score = 274 (101.5 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 100/372 (26%), Positives = 163/372 (43%)
Query: 149 ATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKG 208
+ ERE TLNQLL E+DGFD+ VI L ATN FDR + + +P+ G
Sbjct: 445 SNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVG 504
Query: 209 RTEILKIHASK--VKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSD 266
R ILK+H SK + + D V+L+S A G+TG K ++ D
Sbjct: 505 RESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKID 564
Query: 267 MDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPR 326
AV+R G +++ L ++ A E G A++ + + + +++SI+PR
Sbjct: 565 FIHAVERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRV-EKLSILPR 623
Query: 327 -GQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADAS 385
G L ++ Y+ +L RL LLGGRAAEEV+Y S +++ + A+
Sbjct: 624 SGGALGFTYIPPTHEDRYLLFI-DELHGRLVTLLGGRAAEEVVYSGRISTGALDDIRRAT 682
Query: 386 WLARKILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYD-DYGLTEPPVNFNLDD 444
+A K + + L + G P G D GS + D G +L D
Sbjct: 683 DMAYKAVAEYGLNEKI---G---PVSVATLSAGGIDDSGGSPWGRDQG--------HLVD 728
Query: 445 DIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYPPQTPIS 504
+ LL+ +T++R + L L +++++ EE+ LN P ++
Sbjct: 729 LVQREVTNLLQSALDVALTVVRANPDVLEGLGAQLEDEEKVEGEELQKWLNRVVPSEELA 788
Query: 505 RLLEEENPGTLP 516
++ + LP
Sbjct: 789 VFIKGKQTALLP 800
>UNIPROTKB|Q2KJI7 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9913 "Bos
taurus" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0046872 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 MEROPS:M41.016
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:BC105322 IPI:IPI00686580 RefSeq:NP_001039676.1 UniGene:Bt.1657
HSSP:Q9WZ49 ProteinModelPortal:Q2KJI7 SMR:Q2KJI7 STRING:Q2KJI7
PRIDE:Q2KJI7 Ensembl:ENSBTAT00000031029 GeneID:515757
KEGG:bta:515757 CTD:10939 InParanoid:Q2KJI7 OMA:LYRFVTT
NextBio:20871990 GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
Uniprot:Q2KJI7
Length = 805
Score = 578 (208.5 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 139/359 (38%), Positives = 201/359 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKTL+AKA AGE
Sbjct: 306 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGE 365
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
A VPF ++GSEF+E+ VGVG AR+RDLF A+ N P ++FIDEIDA+ +R +G F
Sbjct: 366 ANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNF--- 422
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E+E TLNQLL+E+DGF+T V+ LA TN FDR+I I
Sbjct: 423 ------GGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFI 476
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR I K+H +K+ +++ A+ L PG++G
Sbjct: 477 GPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARH 536
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
+SI + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 537 LSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYL---EHA--DP 591
Query: 318 CDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L E Y++ R QLL R+ + LGGR +EE+ +G+ T+ A
Sbjct: 592 LLKVSIIPRGKGLGYAQY--LPREQYLYTRE-QLLDRMCMTLGGRVSEEIFFGRITTGA 647
Score = 57 (25.1 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 442 LDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP 498
+DD++ L+ D Y RTV LL A + K +LL ++ + + ++ +L P
Sbjct: 698 IDDEV----RILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELLGPRP 750
>UNIPROTKB|E2QYF3 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060013 "righting reflex" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0042407 "cristae
formation" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
EMBL:AAEX03005521 RefSeq:XP_547682.2 ProteinModelPortal:E2QYF3
Ensembl:ENSCAFT00000029872 GeneID:490560 KEGG:cfa:490560
Uniprot:E2QYF3
Length = 806
Score = 576 (207.8 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 138/359 (38%), Positives = 201/359 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKTL+AKA AGE
Sbjct: 306 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGE 365
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
A VPF ++GSEF+E+ VGVG AR+RDLF A+ N P ++FIDEIDA+ +R +G F
Sbjct: 366 ANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNF--- 422
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E+E TLNQLL+E+DGF+T V+ LA TN FDR+I I
Sbjct: 423 ------GGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFI 476
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR I K+H +K+ +++ A+ L PG++G
Sbjct: 477 GPPDIKGRASIFKVHLRPLKLDSALEKEKLARKLASLTPGFSGADVANVCNEAALIAARH 536
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
+SI + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 537 LSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYL---EHA--DP 591
Query: 318 CDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L E Y++ + QLL R+ + LGGR +EE+ +G+ T+ A
Sbjct: 592 LLKVSIIPRGKGLGYAQY--LPKEQYLYTKE-QLLDRMCMTLGGRVSEEIFFGRITTGA 647
Score = 57 (25.1 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 442 LDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP 498
+DD++ L+ D Y RTV LL A + K +LL ++ + + ++ +L P
Sbjct: 698 IDDEV----RILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELLGPRP 750
Score = 37 (18.1 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 414 VKFVGPRLDFEGSLYDDY 431
V+ +GPR E S Y+++
Sbjct: 743 VELLGPRPFVEKSTYEEF 760
>UNIPROTKB|Q9Y4W6 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9606 "Homo
sapiens" [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0007528
"neuromuscular junction development" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0021675 "nerve
development" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051082 "unfolded protein binding" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0008219 DrugBank:DB00171 GO:GO:0007528 GO:GO:0051082
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 eggNOG:COG0465
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 GO:GO:0021675 GO:GO:0060013 EMBL:Y18314 EMBL:BC065016
IPI:IPI00001091 RefSeq:NP_006787.2 UniGene:Hs.726355 PDB:2LNA
PDBsum:2LNA ProteinModelPortal:Q9Y4W6 SMR:Q9Y4W6 IntAct:Q9Y4W6
MINT:MINT-1161944 STRING:Q9Y4W6 MEROPS:M41.007 PhosphoSite:Q9Y4W6
DMDM:126302516 PaxDb:Q9Y4W6 PeptideAtlas:Q9Y4W6 PRIDE:Q9Y4W6
Ensembl:ENST00000269143 GeneID:10939 KEGG:hsa:10939 UCSC:uc002kqz.2
GeneCards:GC18M012328 H-InvDB:HIX0027367 HGNC:HGNC:315
HPA:HPA004479 HPA:HPA004480 MIM:604581 MIM:610246 MIM:614487
neXtProt:NX_Q9Y4W6 Orphanet:101109 PharmGKB:PA24612
InParanoid:Q9Y4W6 PhylomeDB:Q9Y4W6 GenomeRNAi:10939 NextBio:41551
ArrayExpress:Q9Y4W6 Bgee:Q9Y4W6 CleanEx:HS_AFG3L2
Genevestigator:Q9Y4W6 GermOnline:ENSG00000141385 Uniprot:Q9Y4W6
Length = 797
Score = 576 (207.8 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 138/359 (38%), Positives = 201/359 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKTL+AKA AGE
Sbjct: 305 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGE 364
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
A VPF ++GSEF+E+ VGVG AR+RDLF A+ N P ++FIDEIDA+ +R +G F
Sbjct: 365 ANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNF--- 421
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E+E TLNQLL+E+DGF+T V+ LA TN FDR+I I
Sbjct: 422 ------GGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFI 475
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR I K+H +K+ +++ A+ L PG++G
Sbjct: 476 GPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARH 535
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
+SI + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 536 LSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYL---EHA--DP 590
Query: 318 CDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L E Y++ + QLL R+ + LGGR +EE+ +G+ T+ A
Sbjct: 591 LLKVSIIPRGKGLGYAQY--LPKEQYLYTKE-QLLDRMCMTLGGRVSEEIFFGRITTGA 646
Score = 57 (25.1 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 442 LDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP 498
+DD++ L+ D Y RTV LL A + K +LL ++ + + ++ +L P
Sbjct: 697 IDDEV----RILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELLGPRP 749
>MGI|MGI:1916847 [details] [associations]
symbol:Afg3l2 "AFG3(ATPase family gene 3)-like 2 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0007005 "mitochondrion organization" evidence=IGI] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0008053 "mitochondrial fusion"
evidence=IGI] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016265 "death" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0021675 "nerve development" evidence=IMP]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IGI] [GO:0040014
"regulation of multicellular organism growth" evidence=IMP]
[GO:0042407 "cristae formation" evidence=IGI] [GO:0042552
"myelination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048747 "muscle fiber development" evidence=IMP]
[GO:0060013 "righting reflex" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1916847
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
MEROPS:M41.007 EMBL:BC036999 EMBL:BC043056 IPI:IPI00170357
RefSeq:NP_081406.1 UniGene:Mm.426052 ProteinModelPortal:Q8JZQ2
SMR:Q8JZQ2 IntAct:Q8JZQ2 STRING:Q8JZQ2 PhosphoSite:Q8JZQ2
PaxDb:Q8JZQ2 PRIDE:Q8JZQ2 Ensembl:ENSMUST00000025408 GeneID:69597
KEGG:mmu:69597 UCSC:uc008fmf.1 InParanoid:Q8JZQ2 NextBio:329880
Bgee:Q8JZQ2 CleanEx:MM_AFG3L2 Genevestigator:Q8JZQ2
GermOnline:ENSMUSG00000024527 Uniprot:Q8JZQ2
Length = 802
Score = 573 (206.8 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 137/359 (38%), Positives = 201/359 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKTL+AKA AGE
Sbjct: 304 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGE 363
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
A VPF ++GSEF+E+ VGVG AR+RDLF A+ N P ++FIDEIDA+ +R +G F
Sbjct: 364 ANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNF--- 420
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E+E TLNQLL+E+DGF+T V+ LA TN FDR+I I
Sbjct: 421 ------GGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFI 474
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR I K+H +K+ +++ A+ L PG++G
Sbjct: 475 GPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARH 534
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
++I + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 535 LSDAINEKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYL---EHA--DP 589
Query: 318 CDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L E Y++ + QLL R+ + LGGR +EE+ +G+ T+ A
Sbjct: 590 LLKVSIIPRGKGLGYAQY--LPKEQYLYTKE-QLLDRMCMTLGGRVSEEIFFGRITTGA 645
Score = 56 (24.8 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 442 LDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP 498
+DD++ L+ D Y RTV LL A + K +LL ++ + + ++ +L P
Sbjct: 696 IDDEV----RILISDAYRRTVALLTEKKADVEKVALLLLEKEVLDKNDMVQLLGPRP 748
>UNIPROTKB|F1LN92 [details] [associations]
symbol:Afg3l2 "Protein Afg3l2" species:10116 "Rattus
norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016265 "death" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0021675 "nerve development" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1305259
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
IPI:IPI00192903 RefSeq:NP_001128336.1 UniGene:Rn.8386
ProteinModelPortal:F1LN92 PRIDE:F1LN92 Ensembl:ENSRNOT00000024632
GeneID:307350 KEGG:rno:307350 NextBio:657254 ArrayExpress:F1LN92
Uniprot:F1LN92
Length = 802
Score = 573 (206.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 137/359 (38%), Positives = 201/359 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKTL+AKA AGE
Sbjct: 304 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGE 363
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
A VPF ++GSEF+E+ VGVG AR+RDLF A+ N P ++FIDEIDA+ +R +G F
Sbjct: 364 ANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNF--- 420
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E+E TLNQLL+E+DGF+T V+ LA TN FDR+I I
Sbjct: 421 ------GGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFI 474
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR I K+H +K+ +++ A+ L PG++G
Sbjct: 475 GPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARH 534
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
++I + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 535 LSDAINEKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYL---EHA--DP 589
Query: 318 CDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L E Y++ + QLL R+ + LGGR +EE+ +G+ T+ A
Sbjct: 590 LLKVSIIPRGKGLGYAQY--LPKEQYLYTKE-QLLDRMCMTLGGRVSEEIFFGRITTGA 645
Score = 52 (23.4 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 442 LDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP 498
+DD++ L+ + Y RTV LL A + K +LL ++ + + ++ +L P
Sbjct: 696 IDDEV----RILISEAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELLGPRP 748
>TIGR_CMR|CJE_1259 [details] [associations]
symbol:CJE_1259 "cell division protein FtsH"
species:195099 "Campylobacter jejuni RM1221" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
OMA:RARASMP RefSeq:YP_179247.1 ProteinModelPortal:Q5HTY8 SMR:Q5HTY8
STRING:Q5HTY8 GeneID:3231766 KEGG:cjr:CJE1259 PATRIC:20044314
ProtClustDB:CLSK872348 BioCyc:CJEJ195099:GJC0-1285-MONOMER
Uniprot:Q5HTY8
Length = 645
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 139/376 (36%), Positives = 216/376 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKFSDVAG++EA EE++E+V +LK PE + K+G K P G+LL GPPG GKTL+AKA+AGE
Sbjct: 175 VKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVGPPGTGKTLLAKAVAGE 234
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF+ ++GS F+E+ VGVG++R+RDLF+ AK P+++FIDEIDA+ R +
Sbjct: 235 ADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFIDEIDAIGKSRAA-----S 289
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKG-VIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+ ERE TLNQLL E+DGF T VI LAATN FDR++ +
Sbjct: 290 GMM--GGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAALLRPGRFDRQVLV 347
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ KGR +ILK+H VK+S V + A+ G G +
Sbjct: 348 DKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANIINEAALLAGRDSKKY 407
Query: 262 ILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRI 321
+ +D+ +AV+R G +++ + + + E G A+I+ + AK ++
Sbjct: 408 VEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIAETTK---GAKR--VSKV 462
Query: 322 SIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYL 381
S++PRG + ++ ++ ++ +L+ + VLLGGRAAEEV G+ ++ AS N L
Sbjct: 463 SVIPRGLAALGYTLNTPEENKFLMQKH-ELIAEVDVLLGGRAAEEVFIGEISTGAS-NDL 520
Query: 382 ADASWLARKILTIWNL 397
A+ + + +++++ +
Sbjct: 521 ERATDIIKAMISMYGM 536
>WB|WBGene00004978 [details] [associations]
symbol:spg-7 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0030968 "endoplasmic reticulum unfolded protein response"
evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0008270 GO:GO:0006508
GO:GO:0000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0030968
EMBL:FO081580 HSSP:Q9LCZ4 RefSeq:NP_491165.2
ProteinModelPortal:Q9N3T5 SMR:Q9N3T5 STRING:Q9N3T5 MEROPS:M41.A10
PaxDb:Q9N3T5 EnsemblMetazoa:Y47G6A.10 GeneID:171915
KEGG:cel:CELE_Y47G6A.10 UCSC:Y47G6A.10 CTD:171915
WormBase:Y47G6A.10 InParanoid:Q9N3T5 NextBio:873225 Uniprot:Q9N3T5
Length = 782
Score = 583 (210.3 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 136/357 (38%), Positives = 199/357 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF+DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKTL+AKA AGE
Sbjct: 290 VKFADVAGCEEAKIEIMEFVNFLKNPQQYKDLGAKIPKGAILTGPPGTGKTLLAKATAGE 349
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF ++GSEF+E+ VGVG AR+RD+F A+ N P ++FIDEIDA+ +R G K
Sbjct: 350 ANVPFITVSGSEFLEMFVGVGPARVRDMFSMARKNSPCILFIDEIDAVGRKRGG--KGGM 407
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKG-VIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E+E TLNQLL+E+DGF T + VI +AATN FDR+I +
Sbjct: 408 -----GGHSEQENTLNQLLVEMDGFTTDESSVIVIAATNRVDILDSALLRPGRFDRQIYV 462
Query: 202 RAPNAKGRTEILKIHASKVKMS-DSVDLS-SYAKNLPGWTGXXXXXXXXXXXXXXXXKGH 259
P+ KGR I ++H ++ S D LS A + PG++G +
Sbjct: 463 PVPDIKGRASIFRVHLGPLRTSLDKTVLSRKLAAHTPGFSGADISNVCNEAALIAARDAN 522
Query: 260 ESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCD 319
I + + A++R+ G +++ L + + A E G A+ L+ +
Sbjct: 523 HEISNKHFEQAIERVVAGMEKKTQVLQKEEKKTVAYHEAGHAIAGWFLQHADPLL----- 577
Query: 320 RISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L E Y++ + QLL R+ + LGGR AEE+ +G+ T+ A
Sbjct: 578 KVSIIPRGKGLGYAQY--LPKEQYLYSK-DQLLDRMCMTLGGRVAEEIFFGRITTGA 631
Score = 41 (19.5 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 25 FSDVAGIDEAVEELQELVRYLKNPELFDK 53
FS VA D++V + QE++ L + F++
Sbjct: 33 FSAVAKDDKSVLKQQEVLHLLAKDQRFEE 61
>UNIPROTKB|A7E2Z6 [details] [associations]
symbol:SPG7 "SPG7 protein" species:9913 "Bos taurus"
[GO:0008089 "anterograde axon cargo transport" evidence=IEA]
[GO:0007005 "mitochondrion organization" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
MEROPS:M41.006 CTD:6687 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
EMBL:DAAA02046269 EMBL:BC151632 IPI:IPI00866907
RefSeq:NP_001095492.1 UniGene:Bt.11239 SMR:A7E2Z6 STRING:A7E2Z6
Ensembl:ENSBTAT00000032500 GeneID:515269 KEGG:bta:515269
InParanoid:A7E2Z6 NextBio:20871741 Uniprot:A7E2Z6
Length = 779
Score = 570 (205.7 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 144/376 (38%), Positives = 206/376 (54%)
Query: 4 QIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVL 63
Q+KM F + + GV F DVAG+ EA E++E V YLK+PE F ++G K P G L
Sbjct: 289 QLKMARFTI--VDGKMGKGVSFKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGAL 346
Query: 64 LEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIF 123
L GPPGCGKTL+AKA+A EA VPF MAG EFVEV+ G+G+AR+R LFK A+ P +++
Sbjct: 347 LLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVY 406
Query: 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXX 183
IDEIDA+ +R ++ T+E E TLNQLL+E+DG T VI LAATN
Sbjct: 407 IDEIDAVGKKRSTAVSGFSN------TEE-EQTLNQLLVEMDGMGTTDHVIVLAATNRAD 459
Query: 184 XXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY--AKNLPGWTGX 241
DR + I P + R EI + H +K++ + S A+ PG++G
Sbjct: 460 ILDNALLRPGRLDRHVFIDLPTLQERKEIFEQHLKSLKLTRASSFYSQRLAELTPGFSGA 519
Query: 242 XXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVA 301
+GH ++ +S++D AV+R+ G ++ L + Q A E G A
Sbjct: 520 DIANICNEAALHAAREGHTAVHTSNLDYAVERVVAGTAKKSKVLSKEEQKVVAFHESGHA 579
Query: 302 MISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHR-LDDESYMFERRPQLLHRLQVLLG 360
++ LL E ++SI PR T + L F + L + ++F R QL R+ + LG
Sbjct: 580 LVGWLLEH-----TEAVMKVSITPR--TNAALGFAQMLPRDQHLFTRE-QLFERMCMALG 631
Query: 361 GRAAEEVIYGQDTSRA 376
GRA+E + + + TS A
Sbjct: 632 GRASESISFNRVTSGA 647
Score = 54 (24.1 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 21/94 (22%), Positives = 39/94 (41%)
Query: 417 VGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTV 476
+GP + F + G+ P + L I L+ Y T +LR + L
Sbjct: 671 IGP-VSFPEAQEGVTGIGRRPFSQGLQQMIDHEARLLVATAYRHTEQVLRDNLDKLHALA 729
Query: 477 KVLLNQKEIGREEIDFILNNYPPQTPISRLLEEE 510
LL ++ I E+I+ ++ PP P ++ ++
Sbjct: 730 SALLEKEVINYEDIEALIGP-PPHGPKKKIAPQK 762
>ZFIN|ZDB-GENE-070410-25 [details] [associations]
symbol:yme1l1b "YME1-like 1b" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 ZFIN:ZDB-GENE-070410-25 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 KO:K08955
MEROPS:M41.A20 HOVERGEN:HBG057127 EMBL:BC139529 IPI:IPI00614293
RefSeq:NP_001082983.1 UniGene:Dr.148676 ProteinModelPortal:A4QNU8
SMR:A4QNU8 STRING:A4QNU8 GeneID:557907 KEGG:dre:557907 CTD:557907
InParanoid:A4QNU8 NextBio:20882221 Uniprot:A4QNU8
Length = 722
Score = 541 (195.5 bits), Expect = 1.4e-58, Sum P(3) = 1.4e-58
Identities = 120/311 (38%), Positives = 182/311 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA ELQE+V +L+NP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 285 VTFEHVKGVEEAKNELQEVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 344
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 345 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKGNAPCVIFIDELDSVGGKRI----ESP 400
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GVI + ATN FD ++ +
Sbjct: 401 MHPYS-----RQT-INQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVP 454
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEILK + K+K+ +V+ A+ G++G G + +
Sbjct: 455 RPDVKGRTEILKWYLKKIKVDSAVEAEVIARGTVGFSGAELENLVNQAALKAAVDGKDMV 514
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ A D++ +GP+RR E+ + + A E G A+I++ Y + ++ +
Sbjct: 515 TMKELEFAKDKILMGPERRSAEIDKRNKEITAYHESGHAIIAY----YTKDAMPI-NKAT 569
Query: 323 IVPRGQTLSQL 333
I+PRG TL +
Sbjct: 570 IMPRGPTLGHV 580
Score = 296 (109.3 bits), Expect = 3.1e-24, Sum P(3) = 3.1e-24
Identities = 73/248 (29%), Positives = 128/248 (51%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
T+NQLL E+DGF +GVI + ATN FD ++ + P+ KGRTEILK
Sbjct: 408 TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKW 467
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
+ K+K+ +V+ A+ G++G G + + +++ A D++
Sbjct: 468 YLKKIKVDSAVEAEVIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFAKDKIL 527
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
+GP+RR E+ + + A E G A+I++ Y + ++ +I+PRG TL +
Sbjct: 528 MGPERRSAEIDKRNKEITAYHESGHAIIAY----YTKDAMPI-NKATIMPRGPTLGHVSM 582
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLARKILT 393
L + E R QLL ++ V +GGR AEE+I+G + T+ AS ++ A+ +A+ ++T
Sbjct: 583 --LPENDRWSETRAQLLAQMDVSMGGRVAEELIFGNENITTGASSDF-DSATKIAKMMVT 639
Query: 394 IWNLENPM 401
+ + +
Sbjct: 640 RFGMSEKL 647
Score = 50 (22.7 bits), Expect = 1.4e-58, Sum P(3) = 1.4e-58
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 453 LLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFIL 494
LLRD Y R LL+ + LL + + +EI +L
Sbjct: 673 LLRDSYERAKALLKSRAKEHRNLAEALLRYETLDAKEIQLVL 714
Score = 40 (19.1 bits), Expect = 1.4e-58, Sum P(3) = 1.4e-58
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 23 VKFSDVAGIDEAVEELQ 39
V+F +G+D AV+ +Q
Sbjct: 265 VRFRTTSGLDSAVDPVQ 281
>UNIPROTKB|E1BFQ0 [details] [associations]
symbol:E1BFQ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042407 "cristae formation" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 OMA:WDEKDFR GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:DAAA02046282 IPI:IPI00707325 Ensembl:ENSBTAT00000056979
Uniprot:E1BFQ0
Length = 802
Score = 579 (208.9 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 139/362 (38%), Positives = 204/362 (56%)
Query: 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
GV+F+DVAG +EA E+ E V +LKNP+ + +G K P G LL GPPG GKTL+AKA AG
Sbjct: 299 GVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGALLTGPPGTGKTLLAKATAG 358
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
EAGVPF + GSEF+E+ VGVG AR+RD+F A+ N P ++F+DEIDA+ R++G
Sbjct: 359 EAGVPFITVNGSEFLEMFVGVGPARVRDMFALARKNAPCILFVDEIDAIG-RKRG----- 412
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
H E+E TLNQLL+E+DGF++ V+ LA TN FDR+I I
Sbjct: 413 RGHF--GGQSEQENTLNQLLVEMDGFNSTTNVVVLAGTNRPDVLDPALMRPGRFDRQIYI 470
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR+ I ++H +K+ +S+ + A+ L PG+TG
Sbjct: 471 GPPDIKGRSSIFRVHLRPLKLDESLSKDALARKLAALTPGFTGSGADISNVCNEAALIAA 530
Query: 258 GH--ESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAAT-EVGVAMISHLLRRYENAK 314
H S+ + A++R+ +G + ++ G+ A E G A++ L E+A
Sbjct: 531 RHLNPSVGEKHFEQAIERV-IGGLEKKTQVLQPGEKMTVAYHEAGHAVVGWFL---EHA- 585
Query: 315 VECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTS 374
+ ++SIVPRG+ L L E Y++ R QL R+ +LGGR AE++ +G+ T+
Sbjct: 586 -DPLLKVSIVPRGKGLGYA--QCLPREQYLYTRE-QLFDRMCAMLGGRVAEQLFFGRVTT 641
Query: 375 RA 376
A
Sbjct: 642 GA 643
Score = 40 (19.1 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 433 LTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDF 492
L E P + I L+ + RT+ LL R + K + LL ++ + R ++
Sbjct: 681 LVEKPFSEATAQLIDEEVRRLIGSAHARTLDLLTRCREQVDKVGRRLLEKEVLERADMVE 740
Query: 493 ILNNYP 498
+L P
Sbjct: 741 LLGPRP 746
>RGD|1309722 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0007005 "mitochondrion
organization" evidence=ISO] [GO:0008053 "mitochondrial fusion"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=ISO] [GO:0042407
"cristae formation" evidence=ISO] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1309722
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
IPI:IPI00365343 Ensembl:ENSRNOT00000065957 UCSC:RGD:1309722
ArrayExpress:F1LS61 Uniprot:F1LS61
Length = 761
Score = 573 (206.8 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 136/367 (37%), Positives = 207/367 (56%)
Query: 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKT 73
A + + V+F+DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKT
Sbjct: 260 AKILKNNIDVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKT 319
Query: 74 LVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATR 133
L+AKA AGEA VPF + GSEF+E+ VGVG AR+RD+F A+ + P ++FIDEIDA+ R
Sbjct: 320 LLAKATAGEAKVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIG-R 378
Query: 134 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
++G HL E+E TLNQ+L+E+DGF++ V+ LA TN
Sbjct: 379 KRG-----RGHL--GGQSEQENTLNQMLVEMDGFNSTTNVVVLAGTNRPDILDPALTRPG 431
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXX 249
FDR+I I P+ KGR+ I K+H +K+ +S+ + ++ L PG+TG
Sbjct: 432 RFDRQIYIGPPDIKGRSSIFKVHLRPLKLDESLTRDALSRKLAALTPGFTGADISNVCNE 491
Query: 250 XXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRR 309
S+ + A++R+ G +++ L ++ A E G A++ L
Sbjct: 492 AALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFL-- 549
Query: 310 YENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIY 369
E+A + ++SI+PRG+ L + L E Y++ R QL R+ ++LGGR AE++ +
Sbjct: 550 -EHA--DPLLKVSIIPRGKGLGYAQY--LPREQYLYTRE-QLFDRMCMMLGGRVAEQLFF 603
Query: 370 GQDTSRA 376
GQ T+ A
Sbjct: 604 GQITTGA 610
Score = 46 (21.3 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 453 LLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFI 493
L+R Y RT+ LL + + K + LL +KE+ E+ D I
Sbjct: 668 LVRSAYNRTLELLTQCREQVEKVGRRLL-EKEV-LEKADMI 706
>MGI|MGI:1928277 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=ISA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IGI] [GO:0008053 "mitochondrial fusion" evidence=IGI]
[GO:0008152 "metabolic process" evidence=ISA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IGI] [GO:0042407 "cristae formation" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1928277
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0031966
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 EMBL:AK012394 EMBL:AK159647 EMBL:AK167964
EMBL:AK168244 EMBL:BC056978 EMBL:AF329695 IPI:IPI00468514
IPI:IPI00652659 RefSeq:NP_473411.2 UniGene:Mm.287475
ProteinModelPortal:Q920A7 SMR:Q920A7 IntAct:Q920A7 STRING:Q920A7
MEROPS:M41.016 PhosphoSite:Q920A7 PaxDb:Q920A7 PRIDE:Q920A7
Ensembl:ENSMUST00000001520 Ensembl:ENSMUST00000098320 GeneID:114896
KEGG:mmu:114896 UCSC:uc009nwd.2 CTD:114896 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 InParanoid:Q920A7 KO:K08956 OMA:WDEKDFR
OrthoDB:EOG4SBDXC NextBio:368917 Bgee:Q920A7 CleanEx:MM_AFG3L1
Genevestigator:Q920A7 GermOnline:ENSMUSG00000031967 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
Uniprot:Q920A7
Length = 789
Score = 571 (206.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 135/367 (36%), Positives = 206/367 (56%)
Query: 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKT 73
A + + V+F+DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKT
Sbjct: 288 AKILKNNIDVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKT 347
Query: 74 LVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATR 133
L+AKA AGEA VPF + GSEF+E+ VGVG AR+RD+F A+ + P ++FIDEIDA+ R
Sbjct: 348 LLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIG-R 406
Query: 134 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
++G HL E+E TLNQ+L+E+DGF++ V+ LA TN
Sbjct: 407 KRG-----RGHL--GGQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPG 459
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXX 249
FDR+I I P+ KGR+ I K+H +K+ S+ + ++ L PG+TG
Sbjct: 460 RFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNE 519
Query: 250 XXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRR 309
S+ + A++R+ G +++ L ++ A E G A++ L
Sbjct: 520 AALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFL-- 577
Query: 310 YENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIY 369
E+A + ++SI+PRG+ L + L E +++ R QL R+ ++LGGR AE++ +
Sbjct: 578 -EHA--DPLLKVSIIPRGKGLGYAQY--LPREQFLYTRE-QLFDRMCMMLGGRVAEQLFF 631
Query: 370 GQDTSRA 376
GQ T+ A
Sbjct: 632 GQITTGA 638
Score = 46 (21.3 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 453 LLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFI 493
L+R Y RT+ LL + + K + LL +KE+ E+ D I
Sbjct: 696 LVRSAYNRTLELLTQCREQVEKVGRRLL-EKEV-LEKADMI 734
>POMBASE|SPCC965.04c [details] [associations]
symbol:SPCC965.04c "mitochondrial inner membrane i-AAA
protease complex subunit Yme1 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0004176 "ATP-dependent peptidase
activity" evidence=ISO] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=ISO] [GO:0007005
"mitochondrion organization" evidence=ISS] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0031942 "i-AAA complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC965.04c GO:GO:0016021 GO:GO:0005524 EMBL:CU329672
GO:GO:0046872 GO:GO:0004222 GO:GO:0006515 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 GO:GO:0004176
HOGENOM:HOG000217276 MEROPS:M41.004 GO:GO:0031942 PIR:T41657
RefSeq:NP_588514.1 ProteinModelPortal:O59824 SMR:O59824
STRING:O59824 EnsemblFungi:SPCC965.04c.1 GeneID:2538746
KEGG:spo:SPCC965.04c KO:K08955 OMA:LANANMS OrthoDB:EOG4FR40W
NextBio:20799930 Uniprot:O59824
Length = 709
Score = 571 (206.1 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
Identities = 141/384 (36%), Positives = 217/384 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V+FSDV G+DEA EEL+E+V +L++P F ++G K P GVLL GPPG GKT++A+A+AGE
Sbjct: 264 VRFSDVQGVDEAKEELEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGE 323
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF+ M+GS+F E+ VGVG+ R+R+LF A+ PS+IFIDE+DA+ +R +D
Sbjct: 324 ANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNA--RDAA 381
Query: 143 DHLYNAATQERETTLNQLLIELDGF----DTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
H+ R+T LNQLL++LDGF D V+F+ ATN FDR
Sbjct: 382 -HM-------RQT-LNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRH 432
Query: 199 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKG 258
I + P+ +GR IL H V + VDLS A+ G+ G
Sbjct: 433 IHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNL 492
Query: 259 HESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECC 318
++ D++ + DR+ +G +R+ + + + A E G A+++ + NA
Sbjct: 493 STAVSMRDLEWSKDRILMGAERKSAFITPENKLMTAYHEGGHALVALFTK---NAMRPY- 548
Query: 319 DRISIVPRGQTLSQLV-FHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSR 375
+ +I+PRG +L + +D +S+ R + L L V +GGRAAEE++YG+D TS
Sbjct: 549 -KATIMPRGSSLGMTISLPDMDKDSWT---REEYLAMLDVTMGGRAAEELLYGKDKITSG 604
Query: 376 ASVNYLADASWLARKILTIWNLEN 399
A N + A+ +AR+++T + + +
Sbjct: 605 AH-NDIDKATQVARRMVTEFGMSD 627
Score = 45 (20.9 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 451 EELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFIL 494
+ LL Y R+++LL+ H L L++ + + EE++ ++
Sbjct: 654 KSLLEASYERSLSLLKSHKKELDALATALVDYEFLTAEEMNRVV 697
>UNIPROTKB|E1BZ74 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0016265 "death" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0042407 "cristae formation" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0060013 "righting
reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0008270 GO:GO:0006508
GO:GO:0040014 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 GO:GO:0016265
GO:GO:0060013 EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00603273 Ensembl:ENSGALT00000022474 ArrayExpress:E1BZ74
Uniprot:E1BZ74
Length = 805
Score = 572 (206.4 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 137/359 (38%), Positives = 201/359 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF DVAG +EA E+ E V +LKNP+ ++ +G K P G +L GPPG GKTL+AKA AGE
Sbjct: 305 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYEDLGAKIPKGAILTGPPGTGKTLLAKATAGE 364
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
A VPF + GSEF+E+ VGVG AR+RDLF A+ N P ++FIDEIDA+ +R +G F
Sbjct: 365 ANVPFITVNGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNF--- 421
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E+E TLNQLL+E+DGF+T V+ LA TN FDR+I I
Sbjct: 422 ------GGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIYI 475
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR I K+H +K+ +D + A+ L PG++G
Sbjct: 476 GPPDIKGRASIFKVHLRPLKLDTVLDKDNLARKLASLTPGFSGADIANVCNEAALIAARH 535
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
++I + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 536 LSDAINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWFL---EHA--DP 590
Query: 318 CDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L E Y++ + QLL R+ + LGGR +E++ +G+ T+ A
Sbjct: 591 LLKVSIIPRGKGLGYAQY--LPKEQYLYTKE-QLLDRMCMTLGGRVSEQIFFGRITTGA 646
Score = 43 (20.2 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 453 LLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP 498
L+ Y RT++LL A + K LL ++ + + ++ +L P
Sbjct: 704 LINIAYDRTLSLLTEKKAEVEKVALRLLEKEVLDKSDMVDLLGPRP 749
>UNIPROTKB|F1N9N5 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
OMA:LYRFVTT EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00683486 Ensembl:ENSGALT00000016639 ArrayExpress:F1N9N5
Uniprot:F1N9N5
Length = 635
Score = 572 (206.4 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 137/359 (38%), Positives = 201/359 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF DVAG +EA E+ E V +LKNP+ ++ +G K P G +L GPPG GKTL+AKA AGE
Sbjct: 149 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYEDLGAKIPKGAILTGPPGTGKTLLAKATAGE 208
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
A VPF + GSEF+E+ VGVG AR+RDLF A+ N P ++FIDEIDA+ +R +G F
Sbjct: 209 ANVPFITVNGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNF--- 265
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E+E TLNQLL+E+DGF+T V+ LA TN FDR+I I
Sbjct: 266 ------GGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIYI 319
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR I K+H +K+ +D + A+ L PG++G
Sbjct: 320 GPPDIKGRASIFKVHLRPLKLDTVLDKDNLARKLASLTPGFSGADIANVCNEAALIAARH 379
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
++I + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 380 LSDAINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWFL---EHA--DP 434
Query: 318 CDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L E Y++ + QLL R+ + LGGR +E++ +G+ T+ A
Sbjct: 435 LLKVSIIPRGKGLGYAQY--LPKEQYLYTKE-QLLDRMCMTLGGRVSEQIFFGRITTGA 490
Score = 43 (20.2 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 453 LLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP 498
L+ Y RT++LL A + K LL ++ + + ++ +L P
Sbjct: 548 LINIAYDRTLSLLTEKKAEVEKVALRLLEKEVLDKSDMVDLLGPRP 593
>POMBASE|SPBC543.09 [details] [associations]
symbol:yta12 "mitochondrial m-AAA protease Yta12
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005745 "m-AAA complex" evidence=ISO] [GO:0006091 "generation
of precursor metabolites and energy" evidence=NAS] [GO:0006465
"signal peptide processing" evidence=ISO] [GO:0006508 "proteolysis"
evidence=ISO] [GO:0008237 "metallopeptidase activity" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=ISO] [GO:0045041 "protein import into
mitochondrial intermembrane space" evidence=ISO] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC543.09
GO:GO:0005524 GO:GO:0046872 EMBL:CU329671 GO:GO:0008270
GO:GO:0006508 GO:GO:0008237 GO:GO:0004222 GO:GO:0006091
GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
KO:K08956 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 OMA:LYRFVTT
OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0045041 GO:GO:0006465
GO:GO:0033108 RefSeq:NP_596797.1 ProteinModelPortal:Q9HGM3
SMR:Q9HGM3 STRING:Q9HGM3 MEROPS:M41.A14 EnsemblFungi:SPBC543.09.1
GeneID:2541079 KEGG:spo:SPBC543.09 NextBio:20802192 Uniprot:Q9HGM3
Length = 773
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 142/388 (36%), Positives = 218/388 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
+KF+DVAG+DEA EE+ E V++LKNP+ ++++G K P G +L GPPG GKTL+AKA AGE
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGE 352
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDAL--ATRRQGIFKD 140
A VPF ++GSEF+E+ VGVG +R+RDLF A+ N P +IFIDEIDA+ A R G F
Sbjct: 353 ANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQF-- 410
Query: 141 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIR 200
+ ERE+TLNQLL+E+DGF + + ++ A TN FDR+I
Sbjct: 411 -------GSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQIT 463
Query: 201 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP----GWTGXXXXXXXXXXXXXXXX 256
I P+ GR +I K+H +K +D++DL AK L G+TG
Sbjct: 464 IDRPDIGGREQIFKVHLKHIKAADNIDL--IAKRLAVLTSGFTGADIMNVCNEGALIAAR 521
Query: 257 KGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVE 316
+ + A++R+T G +++ L + ++ A E G A+ + Y V+
Sbjct: 522 SNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFME-Y----VD 576
Query: 317 CCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TS 374
++SI+PR Q L + L + Y+ R Q+L ++ + L GR +EE+ +G + TS
Sbjct: 577 PLLKVSIIPRAQALGYASY--LPKDQYLMSRG-QILDQMGMALAGRVSEEIFFGPEKITS 633
Query: 375 RASVNYLADASWLARKILTIWNLENPMV 402
AS ++ + +A+ +T + + +P V
Sbjct: 634 GASDDF-QKVTRMAQAYVTQYGM-SPTV 659
>WB|WBGene00010842 [details] [associations]
symbol:ymel-1 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 EMBL:Z49128 PIR:T23690
RefSeq:NP_499298.2 ProteinModelPortal:P54813 SMR:P54813
MEROPS:M41.A11 PaxDb:P54813 EnsemblMetazoa:M03C11.5.1
EnsemblMetazoa:M03C11.5.2 GeneID:176460 KEGG:cel:CELE_M03C11.5
UCSC:M03C11.5.1 CTD:176460 WormBase:M03C11.5
GeneTree:ENSGT00550000074836 InParanoid:P54813 OMA:KWNQYES
NextBio:892672 Uniprot:P54813
Length = 723
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 140/379 (36%), Positives = 214/379 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F DV G+DEA E++E+V YLK+PE + ++G + P GVLL GPPG GKTL+A+AIAGE
Sbjct: 245 VTFDDVRGMDEAKLEVEEIVDYLKDPEKYSRLGGRLPKGVLLVGPPGTGKTLLARAIAGE 304
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF+ AGSEF EVLVG G+ R+RDLF +AK P +IFIDEID++ ++R +
Sbjct: 305 AQVPFFHTAGSEFDEVLVGQGARRVRDLFDKAKARAPCIIFIDEIDSVGSKRVS----NS 360
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y A Q T+NQLL E+DGF +G+I +AATN FD ++ +
Sbjct: 361 IHPY--ANQ----TINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVP 414
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ GR +I + SK+ S +D AK G+TG +
Sbjct: 415 KPDLAGRVDIFNFYLSKIVHSGGIDPKVLAKGSTGFTGADIENMVNQAALKAATDNAVEV 474
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAAT-EVGVAMISHLLRRYENAKVECCDRI 321
+ +D+A DR+ +GP R G + ++ +R A E G ++S L + + ++
Sbjct: 475 TMAYLDEARDRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVS--LYTKDATPLH---KV 529
Query: 322 SIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD-TSRASVNY 380
+I+PRGQ+L + +SY + Q+L L V++GGR AEE+I+G D + + +
Sbjct: 530 TIIPRGQSLGHTAMLP-EKDSYQLTKA-QMLATLDVMMGGRVAEELIFGDDKVTTGAADD 587
Query: 381 LADASWLARKILTIWNLEN 399
L+ A+ LA +++ ++ + +
Sbjct: 588 LSKATQLAVQMVKVFGMSD 606
>ASPGD|ASPL0000072959 [details] [associations]
symbol:AN4557 species:162425 "Emericella nidulans"
[GO:0097002 "mitochondrial inner boundary membrane" evidence=IEA]
[GO:0005745 "m-AAA complex" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0006461 "protein
complex assembly" evidence=IEA] [GO:0006465 "signal peptide
processing" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 OMA:LYRFVTT MEROPS:M41.002 OrthoDB:EOG4J14HG
EMBL:BN001303 EMBL:AACD01000078 RefSeq:XP_662161.1
ProteinModelPortal:Q5B4H3 SMR:Q5B4H3 STRING:Q5B4H3
EnsemblFungi:CADANIAT00005881 GeneID:2872358 KEGG:ani:AN4557.2
Uniprot:Q5B4H3
Length = 883
Score = 596 (214.9 bits), Expect = 1.2e-57, P = 1.2e-57
Identities = 142/391 (36%), Positives = 216/391 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
+KFSDVAG+DEA E+ E V +LK+PE F K+G K P G +L GPPG GKTL+AKA AGE
Sbjct: 399 IKFSDVAGMDEAKVEIMEFVSFLKSPERFQKLGAKIPRGAILSGPPGTGKTLLAKATAGE 458
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
+GVPF+ ++GSEFVE+ VGVG +R+RDLF A+ N P +IFIDEIDA+ R K+
Sbjct: 459 SGVPFFSVSGSEFVEMFVGVGPSRVRDLFANARKNTPCIIFIDEIDAIGKSRSA--KN-- 514
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
++ ERE+TLNQ+L E+DGF+T V+ LA TN FDR I I
Sbjct: 515 ---FSGGNDERESTLNQILTEMDGFNTSDQVVVLAGTNRPDVLDKALMRPGRFDRHISID 571
Query: 203 APNAKGRTEILKIHASKVKMSDSVD-LSSYAKNL-PGWTGXXXXXXXXXXXXXXXXKGHE 260
P GR +I ++H K+ + +D L+ L PG+ G + E
Sbjct: 572 RPTMDGRKQIFRVHLKKIVTKEDMDYLTGRLSALTPGFAGADIANCVNEAALVAARENAE 631
Query: 261 SILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDR 320
S+ + A++R+ G +++ + L + + A E G A+ R + + + +
Sbjct: 632 SVTMKHFERAIERVVGGLEKKSLVLSPEEKRTVAYHEAGHAICGWYFR-WADPLL----K 686
Query: 321 ISIVPRGQ-TLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVN 379
+SI+PRGQ L + + ++Y+ Q++ R+ + LGGR +EE+ + TS AS +
Sbjct: 687 VSIIPRGQGALGYAQYLPANGDTYLMTAN-QMMDRMAMTLGGRVSEELHFDTVTSGASDD 745
Query: 380 YLADASWLARKILTIWNLENPM-VIHGEPPP 409
+ + LA ++T + + + I+ E P
Sbjct: 746 F-NKVTRLATAMVTKFGMSPKLKYIYYEEDP 775
>UNIPROTKB|J9NRR9 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0016020
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01241 GeneTree:ENSGT00550000074836 EMBL:AAEX03001169
Ensembl:ENSCAFT00000045217 Uniprot:J9NRR9
Length = 694
Score = 565 (203.9 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 124/311 (39%), Positives = 186/311 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRI----ESP 393
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GVI + ATN FD ++ +
Sbjct: 394 MHPYS-----RQT-INQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVP 447
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEILK + +K+K SVD A+ G++G G E +
Sbjct: 448 RPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMV 507
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ N+ ++ A E G A+I++ Y + ++ +
Sbjct: 508 TMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 562
Query: 323 IVPRGQTLSQL 333
I+PRG TL +
Sbjct: 563 IMPRGPTLGHV 573
Score = 44 (20.5 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 2 LIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQ 39
LI + F + + V+F G+D AV+ +Q
Sbjct: 237 LILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQ 274
>UNIPROTKB|F1NTK8 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 EMBL:AADN02000548 IPI:IPI00601077
Ensembl:ENSGALT00000012112 Uniprot:F1NTK8
Length = 712
Score = 540 (195.1 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 119/311 (38%), Positives = 182/311 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 275 VTFEHVKGVEEAKQELQEVVEFLKNPHKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 334
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 335 ADVPFYYASGSEFDEMFVGVGASRIRSLFREAKANAPCVIFIDELDSVGGKRI----ESP 390
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GV+ + ATN FD ++ +
Sbjct: 391 MHPYS-----RQT-INQLLAEMDGFKPNEGVVIIGATNFPEALDNALIRPGRFDMQVTVP 444
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ +GRTEILK + +K+K SVD A+ G++G G + +
Sbjct: 445 KPDVRGRTEILKWYLNKIKYDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKDMV 504
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ + ++ A E G A+I++ Y + ++ +
Sbjct: 505 TMKELEFSKDKILMGPERRSVEIDEKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 559
Query: 323 IVPRGQTLSQL 333
I+ RG TL +
Sbjct: 560 IMTRGTTLGHV 570
Score = 299 (110.3 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 73/248 (29%), Positives = 131/248 (52%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
T+NQLL E+DGF +GV+ + ATN FD ++ + P+ +GRTEILK
Sbjct: 398 TINQLLAEMDGFKPNEGVVIIGATNFPEALDNALIRPGRFDMQVTVPKPDVRGRTEILKW 457
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
+ +K+K SVD A+ G++G G + + +++ + D++
Sbjct: 458 YLNKIKYDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFSKDKIL 517
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
+GP+RR +E+ + ++ A E G A+I++ Y + ++ +I+ RG TL +
Sbjct: 518 MGPERRSVEIDEKNKTITAYHESGHAIIAY----YTKDAMPI-NKATIMTRGTTLGHVSL 572
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLARKILT 393
L + E R QLL ++ V +GGRAAEE+I+G D T+ AS ++ +A+ +A+ ++T
Sbjct: 573 --LPENDRWSETRSQLLAQMDVCMGGRAAEELIFGSDHITTGASSDF-DNATKIAKLMVT 629
Query: 394 IWNLENPM 401
+ + +
Sbjct: 630 RFGMSEKL 637
Score = 69 (29.3 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 428 YDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487
Y D G P ++ ++ RT LLRD Y R +L+ H + LL + +
Sbjct: 642 YTDTGKVSPETQSAIEQEV--RT--LLRDSYERAKNILKTHAKEHKNLAEALLKYETLDA 697
Query: 488 EEIDFIL 494
+EI +L
Sbjct: 698 KEIQIVL 704
>UNIPROTKB|F1P519 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005743 GO:GO:0008283 GO:GO:0004222
GO:GO:0006515 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
GeneTree:ENSGT00550000074836 OMA:HTSHVSA EMBL:AADN02000548
IPI:IPI00822340 Ensembl:ENSGALT00000038444 Uniprot:F1P519
Length = 717
Score = 540 (195.1 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 119/311 (38%), Positives = 182/311 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F V G++EA +ELQE+V +LKNP F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 280 VTFEHVKGVEEAKQELQEVVEFLKNPHKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 339
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR LF+ AK N P VIFIDE+D++ +R ++
Sbjct: 340 ADVPFYYASGSEFDEMFVGVGASRIRSLFREAKANAPCVIFIDELDSVGGKRI----ESP 395
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GV+ + ATN FD ++ +
Sbjct: 396 MHPYS-----RQT-INQLLAEMDGFKPNEGVVIIGATNFPEALDNALIRPGRFDMQVTVP 449
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ +GRTEILK + +K+K SVD A+ G++G G + +
Sbjct: 450 KPDVRGRTEILKWYLNKIKYDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKDMV 509
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+++ + D++ +GP+RR +E+ + ++ A E G A+I++ Y + ++ +
Sbjct: 510 TMKELEFSKDKILMGPERRSVEIDEKNKTITAYHESGHAIIAY----YTKDAMPI-NKAT 564
Query: 323 IVPRGQTLSQL 333
I+ RG TL +
Sbjct: 565 IMTRGTTLGHV 575
Score = 299 (110.3 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 73/248 (29%), Positives = 131/248 (52%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
T+NQLL E+DGF +GV+ + ATN FD ++ + P+ +GRTEILK
Sbjct: 403 TINQLLAEMDGFKPNEGVVIIGATNFPEALDNALIRPGRFDMQVTVPKPDVRGRTEILKW 462
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
+ +K+K SVD A+ G++G G + + +++ + D++
Sbjct: 463 YLNKIKYDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFSKDKIL 522
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
+GP+RR +E+ + ++ A E G A+I++ Y + ++ +I+ RG TL +
Sbjct: 523 MGPERRSVEIDEKNKTITAYHESGHAIIAY----YTKDAMPI-NKATIMTRGTTLGHVSL 577
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLARKILT 393
L + E R QLL ++ V +GGRAAEE+I+G D T+ AS ++ +A+ +A+ ++T
Sbjct: 578 --LPENDRWSETRSQLLAQMDVCMGGRAAEELIFGSDHITTGASSDF-DNATKIAKLMVT 634
Query: 394 IWNLENPM 401
+ + +
Sbjct: 635 RFGMSEKL 642
Score = 69 (29.3 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 428 YDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487
Y D G P ++ ++ RT LLRD Y R +L+ H + LL + +
Sbjct: 647 YTDTGKVSPETQSAIEQEV--RT--LLRDSYERAKNILKTHAKEHKNLAEALLKYETLDA 702
Query: 488 EEIDFIL 494
+EI +L
Sbjct: 703 KEIQIVL 709
>MGI|MGI:2385906 [details] [associations]
symbol:Spg7 "spastic paraplegia 7 homolog (human)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0007155 "cell adhesion" evidence=TAS] [GO:0008089
"anterograde axon cargo transport" evidence=IMP] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030155 "regulation of cell adhesion"
evidence=TAS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 MGI:MGI:2385906 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0030155 GO:GO:0031966 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0007155 GO:GO:0004222
GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOVERGEN:HBG050184 GO:GO:0017111
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 MEROPS:M41.006
CTD:6687 KO:K09552 ChiTaRS:SPG7 EMBL:AF512565 EMBL:AF547215
EMBL:AK145540 EMBL:BC024466 EMBL:BC024986 EMBL:BC051051
EMBL:BC096690 IPI:IPI00170128 RefSeq:NP_694816.3 UniGene:Mm.292075
ProteinModelPortal:Q3ULF4 SMR:Q3ULF4 STRING:Q3ULF4
PhosphoSite:Q3ULF4 PaxDb:Q3ULF4 PRIDE:Q3ULF4
Ensembl:ENSMUST00000108868 GeneID:234847 KEGG:mmu:234847
UCSC:uc009nud.1 InParanoid:Q3ULF4 NextBio:382391 Bgee:Q3ULF4
CleanEx:MM_SPG7 Genevestigator:Q3ULF4 Uniprot:Q3ULF4
Length = 781
Score = 561 (202.5 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 143/376 (38%), Positives = 203/376 (53%)
Query: 4 QIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVL 63
Q+KM F + + GV F DVAG+ EA E++E V YLK+PE F ++G K P G L
Sbjct: 289 QLKMARFTI--VDGKTGKGVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGAL 346
Query: 64 LEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIF 123
L GPPGCGKTL+AKA+A EA VPF MAG EFVEV+ G+G+AR+R LFK A+ P +++
Sbjct: 347 LLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVY 406
Query: 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXX 183
IDEIDA+ +R T+ + + E E TLNQLL+E+DG T VI LA+TN
Sbjct: 407 IDEIDAVGKKRS-----TS--MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 459
Query: 184 XXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY--AKNLPGWTGX 241
DR + I P + R EI + H +K++ S A+ PG++G
Sbjct: 460 VLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGA 519
Query: 242 XXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVA 301
+GH S+ + + + AV+R+ G ++ L + Q A E G A
Sbjct: 520 DIANICNEAALHAAREGHTSVHTFNFEYAVERVIAGTAKKSKILSKEEQRVVAFHESGHA 579
Query: 302 MISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHR-LDDESYMFERRPQLLHRLQVLLG 360
++ LL E ++SI PR T + L F + L + Y+F + QL R+ + LG
Sbjct: 580 LVGWLLEH-----TEAVMKVSIAPR--TNAALGFSQMLPRDQYLFTKE-QLFERMCMALG 631
Query: 361 GRAAEEVIYGQDTSRA 376
GRAAE + + + TS A
Sbjct: 632 GRAAEAISFSRVTSGA 647
Score = 45 (20.9 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 24/113 (21%), Positives = 45/113 (39%)
Query: 417 VGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTV 476
+GP + F + G+ P + L + + L+ Y T +L + L
Sbjct: 671 IGP-VSFPEAQEGLMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLLDNLDKLQALA 729
Query: 477 KVLLNQKEIGREEIDFILNNYPPQTPISRLLEEENPGTLPFIKQEQCSQVEHA 529
LL ++ I E+I+ ++ PP P + ++ + K+ Q S E A
Sbjct: 730 NALLEKEVINYEDIEALIGP-PPHGPKKMIAPQK---WIDAEKERQASGEEEA 778
>UNIPROTKB|Q9UQ90 [details] [associations]
symbol:SPG7 "Paraplegin" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0008089 "anterograde axon cargo transport"
evidence=IEA] [GO:0031966 "mitochondrial membrane" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004222
"metalloendopeptidase activity" evidence=IDA] [GO:0005739
"mitochondrion" evidence=TAS] [GO:0051082 "unfolded protein
binding" evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] [GO:0008233 "peptidase activity" evidence=TAS]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0007399 GO:GO:0031966 GO:GO:0046872
GO:GO:0008219 GO:GO:0051082 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
HOGENOM:HOG000217277 HOVERGEN:HBG050184 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 EMBL:Y16610 EMBL:AF080525
EMBL:AF080511 EMBL:AF080512 EMBL:AF080513 EMBL:AF080514
EMBL:AF080515 EMBL:AF080516 EMBL:AF080517 EMBL:AF080518
EMBL:AF080519 EMBL:AF080520 EMBL:AF080521 EMBL:AF080522
EMBL:AF080523 EMBL:AF080524 EMBL:BC007692 EMBL:BC035929
EMBL:BC036104 EMBL:BC110530 EMBL:BC110531 IPI:IPI00299010
IPI:IPI00398508 RefSeq:NP_003110.1 RefSeq:NP_955399.1
UniGene:Hs.185597 PDB:2QZ4 PDBsum:2QZ4 ProteinModelPortal:Q9UQ90
SMR:Q9UQ90 IntAct:Q9UQ90 STRING:Q9UQ90 MEROPS:M41.006
PhosphoSite:Q9UQ90 DMDM:116242796 PaxDb:Q9UQ90 PRIDE:Q9UQ90
DNASU:6687 Ensembl:ENST00000268704 Ensembl:ENST00000341316
GeneID:6687 KEGG:hsa:6687 UCSC:uc002fni.3 UCSC:uc002fnj.3 CTD:6687
GeneCards:GC16P089574 HGNC:HGNC:11237 MIM:602783 MIM:607259
neXtProt:NX_Q9UQ90 Orphanet:99013 PharmGKB:PA36067
InParanoid:Q9UQ90 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
PhylomeDB:Q9UQ90 ChiTaRS:SPG7 EvolutionaryTrace:Q9UQ90
GenomeRNAi:6687 NextBio:26057 ArrayExpress:Q9UQ90 Bgee:Q9UQ90
CleanEx:HS_SPG7 Genevestigator:Q9UQ90 GermOnline:ENSG00000197912
Uniprot:Q9UQ90
Length = 795
Score = 559 (201.8 bits), Expect = 4.1e-57, Sum P(2) = 4.1e-57
Identities = 142/376 (37%), Positives = 204/376 (54%)
Query: 4 QIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVL 63
Q+KM F + + GV F DVAG+ EA E++E V YLK+PE F ++G K P G L
Sbjct: 289 QLKMARFTI--VDGKMGKGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGAL 346
Query: 64 LEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIF 123
L GPPGCGKTL+AKA+A EA VPF MAG EFVEV+ G+G+AR+R LFK A+ P +++
Sbjct: 347 LLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVY 406
Query: 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXX 183
IDEIDA+ +R TT + + E E TLNQLL+E+DG T VI LA+TN
Sbjct: 407 IDEIDAVGKKRS-----TT--MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 459
Query: 184 XXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY--AKNLPGWTGX 241
DR + I P + R EI + H +K++ S S A+ PG++G
Sbjct: 460 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGA 519
Query: 242 XXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVA 301
+GH S+ + + + AV+R+ G ++ L + Q A E G A
Sbjct: 520 DIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHESGHA 579
Query: 302 MISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHR-LDDESYMFERRPQLLHRLQVLLG 360
++ +L E ++SI PR T + L F + L + ++F + QL R+ + LG
Sbjct: 580 LVGWMLEH-----TEAVMKVSITPR--TNAALGFAQMLPRDQHLFTKE-QLFERMCMALG 631
Query: 361 GRAAEEVIYGQDTSRA 376
GRA+E + + + TS A
Sbjct: 632 GRASEALSFNEVTSGA 647
Score = 47 (21.6 bits), Expect = 4.1e-57, Sum P(2) = 4.1e-57
Identities = 19/86 (22%), Positives = 35/86 (40%)
Query: 417 VGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTV 476
+GP + F + G+ P + L + L+ Y T +L+ + L
Sbjct: 671 IGP-ISFPEAQEGLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALA 729
Query: 477 KVLLNQKEIGREEIDFILNNYPPQTP 502
LL ++ I E+I+ ++ PP P
Sbjct: 730 NALLEKEVINYEDIEALIGP-PPHGP 754
>TAIR|locus:2066128 [details] [associations]
symbol:ftsh3 "FTSH protease 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 EMBL:AC005315 GO:GO:0030163 eggNOG:COG0465
HOGENOM:HOG000217277 KO:K08956 OMA:WDEKDFR TIGRFAMs:TIGR01241
HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176 EMBL:BT002743 EMBL:AY063914
EMBL:AK226271 IPI:IPI00525466 PIR:T02738 RefSeq:NP_850129.1
UniGene:At.24335 ProteinModelPortal:Q84WU8 SMR:Q84WU8
MEROPS:M41.022 PaxDb:Q84WU8 PRIDE:Q84WU8 EnsemblPlants:AT2G29080.1
GeneID:817456 KEGG:ath:AT2G29080 GeneFarm:2506 TAIR:At2g29080
InParanoid:Q84WU8 PhylomeDB:Q84WU8 ProtClustDB:CLSN2692039
Genevestigator:Q84WU8 Uniprot:Q84WU8
Length = 809
Score = 552 (199.4 bits), Expect = 8.4e-57, Sum P(2) = 8.4e-57
Identities = 140/390 (35%), Positives = 211/390 (54%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
+ F DVAG DEA +E+ E V +LKNP+ ++ +G K P G LL GPPG GKTL+AKA AGE
Sbjct: 319 IYFKDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE 378
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
+GVPF ++GS+F+E+ VGVG +R+R LF+ A+ PS+IFIDEIDA+ R +G
Sbjct: 379 SGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAIG-RARG-----R 432
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
L ERE+TLNQLL+E+DGF T GV+ LA TN FDR+I I
Sbjct: 433 GGL--GGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITID 490
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXKG 258
P+ KGR +I KI+ K+K+ + S Y++ L PG+ G
Sbjct: 491 KPDIKGRDQIFKIYLKKIKLDH--EPSYYSQRLAALTPGFAGADIANVCNEAALIAARHE 548
Query: 259 HESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECC 318
++ + + A+DR+ G +++ + + A E G A++ L E+A E
Sbjct: 549 GATVTMAHFESAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFL---EHA--EPL 603
Query: 319 DRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASV 378
+++IVPRG + L F + + + QL + LGGRAAE+V+ G+ ++ A
Sbjct: 604 LKVTIVPRGT--AALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGKISTGAQ- 660
Query: 379 NYLADASWLARKILTIWNLENPMVIHGEPP 408
N L + + + ++ + + + PP
Sbjct: 661 NDLEKVTKMTYAQVAVYGFSDKVGLLSFPP 690
Score = 55 (24.4 bits), Expect = 8.4e-57, Sum P(2) = 8.4e-57
Identities = 16/73 (21%), Positives = 36/73 (49%)
Query: 429 DDYGLTEPPVNFN---LDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEI 485
D Y ++P N +D+++ + + Y RTV L+ H + + ++LL ++ +
Sbjct: 693 DGYDFSKPYSNKTGAIIDEEV----RDWVAKAYERTVELVEEHKVKVAEIAELLLEKEVL 748
Query: 486 GREEIDFILNNYP 498
++++ IL P
Sbjct: 749 HQDDLLKILGERP 761
Score = 39 (18.8 bits), Expect = 4.1e-55, Sum P(2) = 4.1e-55
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 400 PMVIHGEPPPWRKKV 414
P+V G PPP+ +V
Sbjct: 792 PVVDDGAPPPFEPQV 806
>GENEDB_PFALCIPARUM|PFL1925w [details] [associations]
symbol:PFL1925w "cell division protein FtsH,
putative" species:5833 "Plasmodium falciparum" [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
ProtClustDB:CLSZ2433071 Uniprot:Q8I526
Length = 880
Score = 565 (203.9 bits), Expect = 8.9e-57, Sum P(2) = 8.9e-57
Identities = 123/381 (32%), Positives = 215/381 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++F ++AGIDE+ EL E+V ++KN E + +MG + P GVLL GPPG GKT++A+A+A E
Sbjct: 146 IRFEEIAGIDESKLELLEVVDFIKNREKYHEMGARMPKGVLLVGPPGSGKTMLARAVATE 205
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VP+ +G EF+E+ VG G+ RIR LF A+ PS++FIDEIDA+ +R ++
Sbjct: 206 ANVPYIYTSGPEFIEIYVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKR------SS 259
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
+ A +E + TLNQLL+E+DGF ++ + ATN FDR + +
Sbjct: 260 GSVNGAGQREHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVP 319
Query: 203 APNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR +IL+I+ K+K + D+ A+ PG++G
Sbjct: 320 LPDINGRKKILEIYIKKIKSDLKLEDIEKIARLTPGFSGADLENVVNEATILATRNNKSL 379
Query: 262 ILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRI 321
+ +++ +A D++++GP+R+ + + + A E G A++++ L+ K + +
Sbjct: 380 VTINELYEARDKVSMGPERKSLRQSDHQRRITAYHEAGHAIVAYFLQ----PKTDPIHKA 435
Query: 322 SIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ-DTSRASVNY 380
+I+ RG L + +DD F + Q+ +L V +GGR AEE+++G+ +TS + +
Sbjct: 436 TIISRGNALGYVEQIPVDDRHNYF--KSQMEAKLAVCMGGRTAEEIVFGKSETSSGASSD 493
Query: 381 LADASWLARKILTIWNLENPM 401
++ A+ +A K++T W + + +
Sbjct: 494 ISRATEIAYKMVTEWGMSDKL 514
Score = 47 (21.6 bits), Expect = 8.9e-57, Sum P(2) = 8.9e-57
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 410 WRKKVKFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHH 469
W K +GP L+++ + D Y ++ I + L+ + +LRRH
Sbjct: 508 WGMSDK-LGP-LNYKKRMGDGYSSNR--LSAQTVSSIEVEVKSLVEKGKSLSEEILRRHR 563
Query: 470 AALLKTVKVLLNQKEIGREEIDFILN 495
L LL+++ + EEI I++
Sbjct: 564 KELDNLAFALLDKETLSGEEIKNIID 589
>UNIPROTKB|Q8I526 [details] [associations]
symbol:PFL1925w "Cell division protein FtsH, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
ProtClustDB:CLSZ2433071 Uniprot:Q8I526
Length = 880
Score = 565 (203.9 bits), Expect = 8.9e-57, Sum P(2) = 8.9e-57
Identities = 123/381 (32%), Positives = 215/381 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++F ++AGIDE+ EL E+V ++KN E + +MG + P GVLL GPPG GKT++A+A+A E
Sbjct: 146 IRFEEIAGIDESKLELLEVVDFIKNREKYHEMGARMPKGVLLVGPPGSGKTMLARAVATE 205
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VP+ +G EF+E+ VG G+ RIR LF A+ PS++FIDEIDA+ +R ++
Sbjct: 206 ANVPYIYTSGPEFIEIYVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKR------SS 259
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
+ A +E + TLNQLL+E+DGF ++ + ATN FDR + +
Sbjct: 260 GSVNGAGQREHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVP 319
Query: 203 APNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR +IL+I+ K+K + D+ A+ PG++G
Sbjct: 320 LPDINGRKKILEIYIKKIKSDLKLEDIEKIARLTPGFSGADLENVVNEATILATRNNKSL 379
Query: 262 ILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRI 321
+ +++ +A D++++GP+R+ + + + A E G A++++ L+ K + +
Sbjct: 380 VTINELYEARDKVSMGPERKSLRQSDHQRRITAYHEAGHAIVAYFLQ----PKTDPIHKA 435
Query: 322 SIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ-DTSRASVNY 380
+I+ RG L + +DD F + Q+ +L V +GGR AEE+++G+ +TS + +
Sbjct: 436 TIISRGNALGYVEQIPVDDRHNYF--KSQMEAKLAVCMGGRTAEEIVFGKSETSSGASSD 493
Query: 381 LADASWLARKILTIWNLENPM 401
++ A+ +A K++T W + + +
Sbjct: 494 ISRATEIAYKMVTEWGMSDKL 514
Score = 47 (21.6 bits), Expect = 8.9e-57, Sum P(2) = 8.9e-57
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 410 WRKKVKFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHH 469
W K +GP L+++ + D Y ++ I + L+ + +LRRH
Sbjct: 508 WGMSDK-LGP-LNYKKRMGDGYSSNR--LSAQTVSSIEVEVKSLVEKGKSLSEEILRRHR 563
Query: 470 AALLKTVKVLLNQKEIGREEIDFILN 495
L LL+++ + EEI I++
Sbjct: 564 KELDNLAFALLDKETLSGEEIKNIID 589
>UNIPROTKB|E2R4F3 [details] [associations]
symbol:SPG7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008089 "anterograde axon cargo transport"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 CTD:6687 KO:K09552 OMA:MMDHEAK
EMBL:AAEX03003953 EMBL:AAEX03003954 RefSeq:XP_546777.3
Ensembl:ENSCAFT00000031561 GeneID:489657 KEGG:cfa:489657
NextBio:20862809 Uniprot:E2R4F3
Length = 793
Score = 556 (200.8 bits), Expect = 1.5e-56, Sum P(2) = 1.5e-56
Identities = 141/376 (37%), Positives = 203/376 (53%)
Query: 4 QIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVL 63
Q+KM F + + GV F DVAG+ EA E++E V YLK+PE F ++G K P G L
Sbjct: 289 QLKMARFTI--VDGKMGKGVSFKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGAL 346
Query: 64 LEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIF 123
L GPPGCGKTL+AKA+A EA VPF MAG EFVEV+ G+G+AR+R LFK A+ P +++
Sbjct: 347 LLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVY 406
Query: 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXX 183
IDEIDA+ +R TT + + E E TLNQLL+E+DG T VI LA+TN
Sbjct: 407 IDEIDAVGKKRS-----TT--MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 459
Query: 184 XXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY--AKNLPGWTGX 241
DR + I P + R EI + H +K++ + S A+ PG++G
Sbjct: 460 ILDNALLRPGRLDRHVFIDLPTLQERREIFEHHLKSLKLTQASSFYSQRLAELTPGFSGA 519
Query: 242 XXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVA 301
+GH S+ + + + AV+R+ G ++ L + Q A E G A
Sbjct: 520 DIANICNEAALHAAREGHTSVHTFNFEYAVERVIAGTAKKSKILSKEEQKVVAFHESGHA 579
Query: 302 MISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHR-LDDESYMFERRPQLLHRLQVLLG 360
++ LL E ++SI PR T + L F + L + ++F + QL R+ + LG
Sbjct: 580 LVGWLLEH-----TEAVMKVSIAPR--TNAALGFAQMLPRDQHLFTKE-QLFERMCMALG 631
Query: 361 GRAAEEVIYGQDTSRA 376
GR +E + + + TS A
Sbjct: 632 GRVSETISFNKVTSGA 647
Score = 45 (20.9 bits), Expect = 1.5e-56, Sum P(2) = 1.5e-56
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 432 GLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEID 491
G+ P + L + + L+ Y T +L+ + L LL ++ I E+I+
Sbjct: 685 GIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIE 744
Query: 492 FILNNYPPQTP 502
++ PP P
Sbjct: 745 ALIGP-PPHGP 754
>FB|FBgn0036702 [details] [associations]
symbol:CG6512 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046331
"lateral inhibition" evidence=IMP] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AE014296
GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0030163 GO:GO:0046331
GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
OMA:YSEDTAM HSSP:Q9LCZ4 UniGene:Dm.986 GeneID:39922
KEGG:dme:Dmel_CG6512 FlyBase:FBgn0036702 GenomeRNAi:39922
NextBio:816090 EMBL:AY084199 RefSeq:NP_730248.2 SMR:Q8T4G5
IntAct:Q8T4G5 MINT:MINT-1004758 STRING:Q8T4G5
EnsemblMetazoa:FBtr0075251 UCSC:CG6512-RA InParanoid:Q8T4G5
Uniprot:Q8T4G5
Length = 826
Score = 581 (209.6 bits), Expect = 2.3e-56, P = 2.3e-56
Identities = 139/357 (38%), Positives = 200/357 (56%)
Query: 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
GV F DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKTL+AKA AG
Sbjct: 324 GVGFKDVAGCEEAKIEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 383
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
EA VPF ++GSEF+E+ VGVG +R+RD+F A+ + P ++FIDEIDA+ +R G K
Sbjct: 384 EANVPFITVSGSEFLEMFVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGG--KTF 441
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
H E+E TLNQLL+E+DGF+T V+ LAATN FDR+I +
Sbjct: 442 GGH------SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYV 495
Query: 202 RAPNAKGRTEILKIHASKVKMS-DSVDLS-SYAKNLPGWTGXXXXXXXXXXXXXXXXKGH 259
AP+ KGR I K+H +K S D +LS A PG+TG
Sbjct: 496 PAPDIKGRASIFKVHLGNLKTSLDKNELSRKMAALTPGFTGADIANVCNEAALIAARDSK 555
Query: 260 ESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCD 319
+SI+ + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 556 DSIVLKHFEQAIERVIAGMEKKTNVLAPEEKRTVAHHEAGHAVAGWFL---EHA--DPLL 610
Query: 320 RISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L + Y+ + QL R+ + LGGR AEE+ + + T+ A
Sbjct: 611 KVSIIPRGKGLGYAQY--LPKDHYLLSKE-QLFDRMCMTLGGRVAEELFFNRITTGA 664
>ASPGD|ASPL0000029469 [details] [associations]
symbol:AN5588 species:162425 "Emericella nidulans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=IEA] [GO:0031942 "i-AAA
complex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
GO:GO:0004222 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01241 OMA:SEFDEVY EnsemblFungi:CADANIAT00003489
Uniprot:C8VG17
Length = 784
Score = 552 (199.4 bits), Expect = 2.5e-56, Sum P(2) = 2.5e-56
Identities = 126/313 (40%), Positives = 179/313 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V+FSDV G DEA +ELQELV +L NPE F +G K P GVLL GPPG GKTL+A+A+AGE
Sbjct: 312 VRFSDVHGCDEAKDELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGE 371
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
AGVPF+ M+GSEF EV VGVG+ R+R+LF +A+ P++IFIDE+DA+ +R +
Sbjct: 372 AGVPFFYMSGSEFDEVYVGVGAKRVRELFNQARSKSPAIIFIDELDAIGAKR-----NER 426
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
D Y + TLNQLL ELDGF GVI LAATN FDRK+ +
Sbjct: 427 DAAYV------KQTLNQLLTELDGFSQSTGVIILAATNYPELLDKALTRPGRFDRKVVVD 480
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ +GR +ILK H V++S VD++ A+ G++G +
Sbjct: 481 LPDVRGRMDILKHHMKNVQISTDVDVAVIARGTSGFSGADLENLVNQAAIFASRNKQSKV 540
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
D D A D++ +G + R + ++ + A E G A++++ + + + +I+
Sbjct: 541 TPKDFDYAKDKIIMGAEARSRIIQDKDKLLTAYHEAGHALVAY----FSPSSMPLY-KIT 595
Query: 323 IVPRGQTLSQLVF 335
I+PRG +L F
Sbjct: 596 IMPRGMSLGSTHF 608
Score = 281 (104.0 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 82/264 (31%), Positives = 128/264 (48%)
Query: 137 IFKDTTDHLYNAATQERET-----TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
IF D D + A ER+ TLNQLL ELDGF GVI LAATN
Sbjct: 411 IFIDELDAI-GAKRNERDAAYVKQTLNQLLTELDGFSQSTGVIILAATNYPELLDKALTR 469
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
FDRK+ + P+ +GR +ILK H V++S VD++ A+ G++G
Sbjct: 470 PGRFDRKVVVDLPDVRGRMDILKHHMKNVQISTDVDVAVIARGTSGFSGADLENLVNQAA 529
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYE 311
+ D D A D++ +G + R + ++ + A E G A++++ +
Sbjct: 530 IFASRNKQSKVTPKDFDYAKDKIIMGAEARSRIIQDKDKLLTAYHEAGHALVAY----FS 585
Query: 312 NAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ 371
+ + +I+I+PRG +L H L + + + Q L + V +GG+ AEE+IYG+
Sbjct: 586 PSSMPLY-KITIMPRGMSLGST--HFLPEMDMVSKNYVQYLSDIDVSMGGKVAEELIYGE 642
Query: 372 D--TSRASVNYLADASWLARKILT 393
D TS S + LA A+ A ++T
Sbjct: 643 DKVTSGISAD-LASATRTAFTLVT 665
Score = 46 (21.3 bits), Expect = 2.5e-56, Sum P(2) = 2.5e-56
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 445 DIAWRTEELLRDMYGRTVTLL--RRHHAALLKTVKVLLNQKEIGREEIDFIL 494
+I L+ + R +L RRH LL K L+ + + +EE++ +L
Sbjct: 692 EIEAEVRRLVEEARQRATNILTERRHELELL--TKALIKYETLTKEEMEKVL 741
>TAIR|locus:2025052 [details] [associations]
symbol:ftsh10 "FTSH protease 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
EMBL:AC022464 ProtClustDB:CLSN2692039 EMBL:AY064138 EMBL:AY124808
EMBL:AK230173 IPI:IPI00520253 PIR:H86209 RefSeq:NP_172231.2
UniGene:At.23339 ProteinModelPortal:Q8VZI8 SMR:Q8VZI8 STRING:Q8VZI8
MEROPS:M41.023 PaxDb:Q8VZI8 PRIDE:Q8VZI8 EnsemblPlants:AT1G07510.1
GeneID:837265 KEGG:ath:AT1G07510 GeneFarm:2535 GeneFarm:2675
TAIR:At1g07510 InParanoid:Q8VZI8 OMA:YSEDTAM PhylomeDB:Q8VZI8
Genevestigator:Q8VZI8 Uniprot:Q8VZI8
Length = 813
Score = 544 (196.6 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 141/413 (34%), Positives = 222/413 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
+ F DVAG +EA +E+ E V +L+NP+ ++ +G K P G LL GPPG GKTL+AKA AGE
Sbjct: 324 IYFKDVAGCEEAKQEIMEFVHFLQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE 383
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
+ VPF ++GS+F+E+ VGVG +R+R+LF+ A+ PS+IFIDEIDA+ R +G F
Sbjct: 384 SAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGG 443
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
D ERE+TLNQLL+E+DGF T GV+ LA TN FDR+I I
Sbjct: 444 ND--------ERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITI 495
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR +I +I+ K+K+ + S Y++ L PG+ G
Sbjct: 496 DKPDIKGRDQIFQIYLKKIKLDH--EPSYYSQRLAALTPGFAGADIANVCNEAALIAARH 553
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
++ + D A+DR+ G +++ + + A E G A+ L E+A E
Sbjct: 554 EGATVTMAHFDSAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVAGWFL---EHA--EP 608
Query: 318 CDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRAS 377
+++IVPRG + L F + + + QL + LGGRAAE+V+ G+ ++ A
Sbjct: 609 LLKVTIVPRGT--AALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQ 666
Query: 378 VNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYDD 430
N L + + + ++ + + + P +++ +F P + G++ D+
Sbjct: 667 -NDLEKVTKMTYAQVAVYGFSDKIGLLSFP---QREDEFSKPYSNRTGAMIDE 715
Score = 54 (24.1 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 458 YGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP 498
Y RTV L+ H + + ++LL ++ + ++++ +L P
Sbjct: 725 YKRTVELIEEHKEQVAQIAELLLEKEVLHQDDLTKVLGERP 765
>ZFIN|ZDB-GENE-070912-46 [details] [associations]
symbol:afg3l2 "AFG3 ATPase family gene 3-like 2 (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-070912-46 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
CTD:10939 MEROPS:M41.007 EMBL:BX000484 EMBL:BC155655
IPI:IPI00513225 RefSeq:NP_001104667.1 UniGene:Dr.82691 SMR:A9JRG9
STRING:A9JRG9 Ensembl:ENSDART00000089834 GeneID:569168
KEGG:dre:569168 NextBio:20889547 Uniprot:A9JRG9
Length = 800
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 137/359 (38%), Positives = 200/359 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKTL+AKA AGE
Sbjct: 300 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGE 359
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
A VPF + GSEF+E+ VGVG AR+RDLF A+ N P ++FIDEIDA+ +R +G F
Sbjct: 360 ANVPFITVNGSEFLEMFVGVGPARVRDLFVLARKNAPCILFIDEIDAVGRKRGRGNF--- 416
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E+E TLNQLL+E+DGF+T V+ LA TN FDR+I I
Sbjct: 417 ------GGQSEQENTLNQLLVEMDGFNTATNVVVLAGTNRPDILDPALMRPGRFDRQIYI 470
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P+ KGR I K+H +K+ +D + A+ + PG++G
Sbjct: 471 GPPDIKGRASIFKVHLRPLKLEAELDKEALARKMAALTPGFSGADIANVCNEAALIAARH 530
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
++I + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 531 LSDAINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWFL---EHA--DP 585
Query: 318 CDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
++SI+PRG+ L + L E Y++ + QLL R+ + LGGR +EE+ +G+ T+ A
Sbjct: 586 LLKVSIIPRGKGLGYAQY--LPKEQYLYTKE-QLLDRMCMTLGGRVSEEIFFGRITTGA 641
>FB|FBgn0024992 [details] [associations]
symbol:CG2658 species:7227 "Drosophila melanogaster"
[GO:0006508 "proteolysis" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9LCZ4
HOGENOM:HOG000226301 MEROPS:M41.A12 EMBL:AL023874
ProteinModelPortal:O76867 SMR:O76867 PaxDb:O76867 PRIDE:O76867
FlyBase:FBgn0024992 InParanoid:O76867 OrthoDB:EOG4V6WXK
ArrayExpress:O76867 Bgee:O76867 Uniprot:O76867
Length = 819
Score = 572 (206.4 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 138/361 (38%), Positives = 202/361 (55%)
Query: 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKA 78
G GV F DVAG+ EA +E++E V YLK+PE + ++G K P G LL GPPGCGKTL+AKA
Sbjct: 334 GGRGVLFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAKVPRGALLLGPPGCGKTLLAKA 393
Query: 79 IAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 138
+A EA VPF M GSEF+E++ G+G+AR+RDLFK K P +I+IDEIDA+ +R G
Sbjct: 394 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAIGRQRSG-- 451
Query: 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
T+ + ++ E E TLNQLL+E+DG T +GV+ LA+TN FDR
Sbjct: 452 ---TESMGQGSSGESEQTLNQLLVEMDGMATKEGVLMLASTNRADILDKALLRPGRFDRH 508
Query: 199 IRIRAPNAKGRTEILKIHASKVKM-SDSVDLSS-YAKNLPGWTGXXXXXXXXXXXXXXXX 256
I I P R EI + H S VK+ S S A+ PG++G
Sbjct: 509 ILIDLPTLAERKEIFEKHLSSVKLESPPTTFSQRLARLTPGFSGADIANVCNEAALHAAR 568
Query: 257 KGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVE 316
+ S +++ AV+RL G ++R L + A E G A++ +L N+ +
Sbjct: 569 NTQMEVSSKNLEYAVERLVGGTEKRSHALSLAERKVIAYHESGHALVGWML---PNSDIL 625
Query: 317 CCDRISIVPRGQTLSQLVFHRLD-DESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSR 375
+++IVPR T L F + E +++ + +L ++ + LGGRAAE +++ + T+
Sbjct: 626 L--KVTIVPR--TSLALGFAQYTPSEQHLYSKE-ELFDKMCMALGGRAAENLVFNRITTG 680
Query: 376 A 376
A
Sbjct: 681 A 681
>TAIR|locus:2163736 [details] [associations]
symbol:FTSH11 "FTSH protease 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0010304 "PSII
associated light-harvesting complex II catabolic process"
evidence=TAS] [GO:0009408 "response to heat" evidence=IMP]
[GO:0009644 "response to high light intensity" evidence=IMP]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0019761
"glucosinolate biosynthetic process" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005743 GO:GO:0046872 GO:GO:0006508
GO:GO:0009941 GO:GO:0004222 GO:GO:0009408 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176
EMBL:AB025622 HOGENOM:HOG000217276 GO:GO:0010304 EMBL:AY091086
EMBL:AY123027 IPI:IPI00537766 RefSeq:NP_568787.1 UniGene:At.7145
ProteinModelPortal:Q9FGM0 SMR:Q9FGM0 MEROPS:M41.018 PaxDb:Q9FGM0
PRIDE:Q9FGM0 EnsemblPlants:AT5G53170.1 GeneID:835398
KEGG:ath:AT5G53170 GeneFarm:4747 TAIR:At5g53170 InParanoid:Q9FGM0
OMA:DIMPEKN PhylomeDB:Q9FGM0 ProtClustDB:CLSN2690002
Genevestigator:Q9FGM0 Uniprot:Q9FGM0
Length = 806
Score = 529 (191.3 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 115/280 (41%), Positives = 166/280 (59%)
Query: 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84
F DV G D+A +EL+E+V YLKNP F ++G K P G+LL G PG GKTL+AKAIAGEAG
Sbjct: 361 FKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG 420
Query: 85 VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDH 144
VPF+ AGSEF E+ VGVG+ R+R LF+ AK P +IFIDEIDA+ + R K H
Sbjct: 421 VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR----KQWEGH 476
Query: 145 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAP 204
T++ TL+QLL+E+DGF+ +G+I +AATN FDR I + +P
Sbjct: 477 -----TKK---TLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSP 528
Query: 205 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILS 264
+ +GR EIL+++ MS+ VD+ + A+ PG+ G +G E + S
Sbjct: 529 DVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLSS 588
Query: 265 SDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS 304
++ A DR+ +G +R+ + + + A E G A+++
Sbjct: 589 EQLEFAKDRIVMGTERKTMFVSEDSKKLTAYHESGHAIVA 628
Score = 300 (110.7 bits), Expect = 8.7e-26, Sum P(2) = 8.7e-26
Identities = 84/263 (31%), Positives = 138/263 (52%)
Query: 137 IFKDTTDHLYNAATQ-ERET--TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
IF D D + + Q E T TL+QLL+E+DGF+ +G+I +AATN
Sbjct: 458 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPG 517
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXX 253
FDR I + +P+ +GR EIL+++ MS+ VD+ + A+ PG+ G
Sbjct: 518 RFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIK 577
Query: 254 XXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENA 313
+G E + S ++ A DR+ +G +R+ + + + A E G A+++ N
Sbjct: 578 AAVEGAEKLSSEQLEFAKDRIVMGTERKTMFVSEDSKKLTAYHESGHAIVAL------NT 631
Query: 314 K-VECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD 372
K + +I+PRG L + +DE+ + +R QLL RL V +GGR AEE+I+G D
Sbjct: 632 KGAHPIHKATIMPRGSALGMVTQLPSNDETSVSKR--QLLARLDVCMGGRVAEELIFGLD 689
Query: 373 --TSRASVNYLADASWLARKILT 393
T+ AS + L+ A+ LA+ +++
Sbjct: 690 HITTGASSD-LSQATELAQYMVS 711
Score = 65 (27.9 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 452 ELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFIL 494
+LLR+ Y R +LL+RH L LL + + E+I IL
Sbjct: 742 KLLREAYERVKSLLKRHEKQLHTLANALLEYETLTAEDIKRIL 784
>UNIPROTKB|F1NXP0 [details] [associations]
symbol:SPG7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007005 "mitochondrion
organization" evidence=IEA] [GO:0008089 "anterograde axon cargo
transport" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 OMA:MMDHEAK EMBL:AADN02054132
IPI:IPI00601320 Ensembl:ENSGALT00000010016 Uniprot:F1NXP0
Length = 768
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 144/378 (38%), Positives = 208/378 (55%)
Query: 4 QIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVL 63
Q+KM F + + G+ F DVAG+ EA E++E V YLKNP+ + ++G K P G L
Sbjct: 262 QLKMARFTI--VDGKSGKGIGFKDVAGMHEAKMEVKEFVDYLKNPDRYLQLGAKVPKGAL 319
Query: 64 LEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIF 123
L GPPGCGKTL+AKA+A EA VPF MAGSEFVEV+ G+G+AR+R LF+ A+ P +++
Sbjct: 320 LLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVIGGLGAARVRSLFREAQARAPCIVY 379
Query: 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXX 183
IDEIDA+ +R + ++ A E E TLNQLL+E+DG T VI LA+TN
Sbjct: 380 IDEIDAVGKKR-------STNVSGFANAEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 432
Query: 184 XXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWT 239
DR I I P + R EI + H +K+ D S Y+++L PG++
Sbjct: 433 VLDNALMRPGRLDRHIFIDLPTLQERREIFEQHLKGLKLIQ--DASFYSQHLAELTPGFS 490
Query: 240 GXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVG 299
G +GH+SI + + + AV+R+ G +R L + + A E G
Sbjct: 491 GADIANICNEAALHAAREGHKSIDTFNFEYAVERVIAGTAKRNKILSPEERKVVAFHESG 550
Query: 300 VAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHR-LDDESYMFERRPQLLHRLQVL 358
A++ LL E ++SI PR T + L F + L E Y+F + QLL R+ +
Sbjct: 551 HALVGWLLEH-----TEAVMKVSIAPR--TNAALGFAQILPREQYLFTKE-QLLERMCMA 602
Query: 359 LGGRAAEEVIYGQDTSRA 376
LGGR +E + + + T+ A
Sbjct: 603 LGGRVSEAITFNKVTTGA 620
>FB|FBgn0034792 [details] [associations]
symbol:CG3499 species:7227 "Drosophila melanogaster"
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0005743 "mitochondrial inner membrane" evidence=ISS]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
EMBL:AE013599 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111
TIGRFAMs:TIGR01241 HSSP:Q9LCZ4 GeneTree:ENSGT00550000074836
KO:K08955 EMBL:AY051480 RefSeq:NP_726263.1 UniGene:Dm.4589
SMR:Q9W1Y0 IntAct:Q9W1Y0 MINT:MINT-924656
EnsemblMetazoa:FBtr0071906 GeneID:37636 KEGG:dme:Dmel_CG3499
UCSC:CG3499-RB FlyBase:FBgn0034792 InParanoid:Q9W1Y0
OrthoDB:EOG4Z613M GenomeRNAi:37636 NextBio:804672 Uniprot:Q9W1Y0
Length = 736
Score = 525 (189.9 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 122/313 (38%), Positives = 175/313 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F DV G DEA +EL+E+V +LK+PE F +G K P GVLL GPPG GKTL+A+A+AGE
Sbjct: 297 VTFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGE 356
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF+ AG EF EVLVG G+ R+RDLFK AK P VIFIDEID++ +R T
Sbjct: 357 AKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKR------TN 410
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
L+ A Q T+NQLL E+DGF GVI L ATN FD ++ +
Sbjct: 411 SVLHPYANQ----TINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVEVMVS 466
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ GR EIL ++ +K+ + D +DL A+ G+TG G E++
Sbjct: 467 TPDFTGRKEILSLYLTKI-LHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETV 525
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
++ A D++ +GP+R+ + + A E G A+++ + E+ + +++
Sbjct: 526 SMKHLETARDKVLMGPERKARLPDEEANTITAYHEGGHAIVAFYTK--ESHPLH---KVT 580
Query: 323 IVPRGQTLSQLVF 335
I+PRG +L +
Sbjct: 581 IMPRGPSLGHTAY 593
Score = 269 (99.8 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 74/263 (28%), Positives = 129/263 (49%)
Query: 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
K T L+ A Q T+NQLL E+DGF GVI L ATN FD +
Sbjct: 407 KRTNSVLHPYANQ----TINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVE 462
Query: 199 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKG 258
+ + P+ GR EIL ++ +K+ + D +DL A+ G+TG G
Sbjct: 463 VMVSTPDFTGRKEILSLYLTKI-LHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDG 521
Query: 259 HESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECC 318
E++ ++ A D++ +GP+R+ + + A E G A+++ + E+ +
Sbjct: 522 AETVSMKHLETARDKVLMGPERKARLPDEEANTITAYHEGGHAIVAFYTK--ESHPLH-- 577
Query: 319 DRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRA 376
+++I+PRG +L + + ++ + QLL + ++GGRAAEE+++G D TS A
Sbjct: 578 -KVTIMPRGPSLGHTAY--IPEKERYHVTKAQLLAMMDTMMGGRAAEELVFGTDKITSGA 634
Query: 377 SVNYLADASWLARKILTIWNLEN 399
S + L A+ +A ++ W + +
Sbjct: 635 SSD-LKQATSIATHMVRDWGMSD 656
Score = 56 (24.8 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 451 EELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILN 495
+ +L D Y R +LR+H + LL + + ++I ILN
Sbjct: 688 KRILSDSYERAKAILRKHTREHKALAEALLKYETLDADDIKAILN 732
>SGD|S000006228 [details] [associations]
symbol:YME1 "Catalytic subunit of the mitochondrial inner
membrane i-AAA protease" species:4932 "Saccharomyces cerevisiae"
[GO:0006457 "protein folding" evidence=IMP] [GO:0005743
"mitochondrial inner membrane" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=IGI;IMP]
[GO:0006515 "misfolded or incompletely synthesized protein
catabolic process" evidence=IMP] [GO:0008233 "peptidase activity"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0031942 "i-AAA complex"
evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
SGD:S000006228 GO:GO:0005524 GO:GO:0006457 GO:GO:0046872
GO:GO:0004222 EMBL:Z71255 EMBL:BK006949 GO:GO:0006515
eggNOG:COG0465 TIGRFAMs:TIGR01241 EMBL:Z49274 GO:GO:0004176
HOGENOM:HOG000217276 MEROPS:M41.004 GO:GO:0031942
GeneTree:ENSGT00550000074836 KO:K08955 OrthoDB:EOG4FR40W
EMBL:L14616 EMBL:X81067 EMBL:D16332 PIR:S54498 RefSeq:NP_015349.1
ProteinModelPortal:P32795 SMR:P32795 IntAct:P32795 STRING:P32795
PaxDb:P32795 PeptideAtlas:P32795 EnsemblFungi:YPR024W GeneID:856135
KEGG:sce:YPR024W CYGD:YPR024w OMA:SEFDEVY NextBio:981236
Genevestigator:P32795 GermOnline:YPR024W Uniprot:P32795
Length = 747
Score = 539 (194.8 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 124/310 (40%), Positives = 178/310 (57%)
Query: 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIA 80
T VKF DV G DEA EL+E+V +LK+P ++ +G K P GVLL GPPG GKTL+A+A A
Sbjct: 276 TNVKFDDVCGCDEARAELEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATA 335
Query: 81 GEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKD 140
GEAGV F+ M+GSEF EV VGVG+ RIRDLF +A+ P++IFIDE+DA+ +R +
Sbjct: 336 GEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKR-----N 390
Query: 141 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIR 200
D Y A Q TLNQLL+ELDGF G+I + ATN FD+ +
Sbjct: 391 PKDQAY--AKQ----TLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVN 444
Query: 201 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHE 260
+ P+ +GR +ILK H K+ ++D+VD + A+ PG +G K
Sbjct: 445 VDLPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAV 504
Query: 261 SILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDR 320
S+ S + A D++ +G +R+ + L + + A E G A+++ +Y N +
Sbjct: 505 SVDMSHFEWAKDKILMGAERKTMVLTDAARKATAFHEAGHAIMA----KYTNGATPLY-K 559
Query: 321 ISIVPRGQTL 330
+I+PRG+ L
Sbjct: 560 ATILPRGRAL 569
Score = 285 (105.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 75/264 (28%), Positives = 130/264 (49%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
TLNQLL+ELDGF G+I + ATN FD+ + + P+ +GR +ILK
Sbjct: 400 TLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKH 459
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
H K+ ++D+VD + A+ PG +G K S+ S + A D++
Sbjct: 460 HMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSVDMSHFEWAKDKIL 519
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
+G +R+ + L + + A E G A+++ +Y N + +I+PRG+ L + F
Sbjct: 520 MGAERKTMVLTDAARKATAFHEAGHAIMA----KYTNGATPLY-KATILPRGRALG-ITF 573
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD-TSRASVNYLADASWLARKILTI 394
+ + +R + RL V +GG+ AEE+IYG+D T+ + L A+ AR ++T
Sbjct: 574 QLPEMDKVDITKR-ECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARAMVTQ 632
Query: 395 WNLEN---PMVIHGEPPPWRKKVK 415
+ + + P+ + W K++
Sbjct: 633 YGMSDDVGPVNLSENWESWSNKIR 656
Score = 41 (19.5 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 452 ELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEID 491
ELL+D R LL + + L + + L+ + + EI+
Sbjct: 665 ELLKDSEERARRLLTKKNVELHRLAQGLIEYETLDAHEIE 704
>UNIPROTKB|I3LLQ8 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0006508 GO:GO:0040014 GO:GO:0004222 GO:GO:0042552
GO:GO:0007409 GO:GO:0030163 GeneTree:ENSGT00530000063070
GO:GO:0017111 GO:GO:0042407 GO:GO:0008053 GO:GO:0034982
TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675
GO:GO:0060013 EMBL:FP565334 Ensembl:ENSSSCT00000025900
Uniprot:I3LLQ8
Length = 597
Score = 522 (188.8 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 129/339 (38%), Positives = 186/339 (54%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIK-PPHGVLLEGPPGCGKTLVAKAIAG 81
VKF DVAG +EA E+ E V +LKNP+ + +G K P G +L GPPG GKTL+AKA AG
Sbjct: 96 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKKGAILTGPPGTGKTLLAKATAG 155
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKD 140
EA VPF ++GSEF+E+ VGVG AR+RDLF A+ N P ++FIDEIDA+ +R +G F
Sbjct: 156 EANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNF-- 213
Query: 141 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIR 200
E+E TLNQLL+E+DGF+T V+ LA TN FDR+I
Sbjct: 214 -------GGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIF 266
Query: 201 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXX 256
I P+ KGR I K+H +K+ +++ A+ L PG++G
Sbjct: 267 IGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAAR 326
Query: 257 KGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVE 316
+SI + A++R+ G +++ L + + A E G A+ L E+A +
Sbjct: 327 HLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYL---EHA--D 381
Query: 317 CCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRL 355
++SI+PRG+ L + L E Y++ + QLL R+
Sbjct: 382 PLLKVSIIPRGKGLGYAQY--LPKEQYLYTKE-QLLDRM 417
Score = 56 (24.8 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 442 LDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEI 485
+DD++ L+ D Y RTV LL A + K V +LL +KE+
Sbjct: 489 IDDEV----RILINDAYKRTVALLTEKKADVEK-VALLLLEKEV 527
>TAIR|locus:2057386 [details] [associations]
symbol:ftsh4 "FTSH protease 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=ISS] [GO:0016020
"membrane" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0009536 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
GO:GO:0005743 GO:GO:0046872 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
EMBL:AC004747 GO:GO:0004176 HOGENOM:HOG000217276 EMBL:AK220842
IPI:IPI00534293 PIR:T02610 RefSeq:NP_565616.1 UniGene:At.23415
ProteinModelPortal:O80983 SMR:O80983 STRING:O80983 MEROPS:M41.004
PaxDb:O80983 PRIDE:O80983 EnsemblPlants:AT2G26140.1 GeneID:817154
KEGG:ath:AT2G26140 GeneFarm:2508 TAIR:At2g26140 InParanoid:O80983
OMA:HTEGALP PhylomeDB:O80983 ProtClustDB:CLSN2688437
Genevestigator:O80983 Uniprot:O80983
Length = 717
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 128/314 (40%), Positives = 181/314 (57%)
Query: 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIA 80
+ KFSDV G+DEA EL+E+V YL++P+ F ++G K P GVLL GPPG GKT++A+AIA
Sbjct: 222 SSTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIA 281
Query: 81 GEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKD 140
GEAGVPF+ +GSEF E+ VGVG+ R+RDLF AK P +IFIDEIDA+ R KD
Sbjct: 282 GEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSRNP--KD 339
Query: 141 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIR 200
Q + TLNQ+L+ELDGF +G+I +AATN FDR I
Sbjct: 340 Q---------QYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIV 390
Query: 201 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHE 260
+ P+ +GR +IL+ H SKV ++ VDL A+ PG++G G +
Sbjct: 391 VPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSK 450
Query: 261 SILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS-HLLRRYENAKVECCD 319
+ SD++ A DR+ +G +R+ + ++ + A E G A+++ H E A
Sbjct: 451 DVTMSDLEFAKDRIMMGSERKSAVISDESRKLTAFHEGGHALVAIHT----EGALP--VH 504
Query: 320 RISIVPRGQTLSQL 333
+ +IVPRG L +
Sbjct: 505 KATIVPRGMALGMV 518
Score = 319 (117.4 bits), Expect = 7.5e-26, P = 7.5e-26
Identities = 112/361 (31%), Positives = 169/361 (46%)
Query: 151 QERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRT 210
Q + TLNQ+L+ELDGF +G+I +AATN FDR I + P+ +GR
Sbjct: 341 QYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRR 400
Query: 211 EILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDA 270
+IL+ H SKV ++ VDL A+ PG++G G + + SD++ A
Sbjct: 401 QILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFA 460
Query: 271 VDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS-HLLRRYENAKVECCDRISIVPRGQT 329
DR+ +G +R+ + ++ + A E G A+++ H E A + +IVPRG
Sbjct: 461 KDRIMMGSERKSAVISDESRKLTAFHEGGHALVAIHT----EGALP--VHKATIVPRGMA 514
Query: 330 LSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWL 387
L + +L D+ R Q+L RL V +GGR AEE+I+G+ TS AS + L A+ L
Sbjct: 515 LGMV--SQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSD-LEQATKL 571
Query: 388 ARKILTIWNL--ENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYDDYGLTEPPVNFNLDDD 445
AR ++T + + E +V H K RL E + L E N N
Sbjct: 572 ARAMVTKFGMSKEVGLVAHNYDD--NGKSMSTETRLLIESEVKQ---LLEKAYN-NAKTI 625
Query: 446 IAWRTEEL--LRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYPPQTPI 503
+ +EL L + + TL + LL + L QK +E + N PP TP
Sbjct: 626 LTVYNKELHALANALLQHETLSGKQIKELLTDLNSPLLQKR--QEVVTKQSNPVPPSTPS 683
Query: 504 S 504
S
Sbjct: 684 S 684
>WB|WBGene00021425 [details] [associations]
symbol:ppgn-1 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
KO:K09552 EMBL:FO080872 EMBL:AB257343 RefSeq:NP_500191.3
UniGene:Cel.12073 ProteinModelPortal:G5EDB6 SMR:G5EDB6
MEROPS:M41.A12 EnsemblMetazoa:Y38F2AR.7.1
EnsemblMetazoa:Y38F2AR.7.2 GeneID:177021 KEGG:cel:CELE_Y38F2AR.7
CTD:177021 WormBase:Y38F2AR.7 OMA:DKISWSE NextBio:895012
Uniprot:G5EDB6
Length = 747
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 134/360 (37%), Positives = 200/360 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
+KF DVAG EA E++E V YLKNP F K+G K P G LL GPPGCGKTL+AKA+A E
Sbjct: 282 IKFKDVAGCSEAKVEIREFVDYLKNPGRFTKLGAKLPRGALLTGPPGCGKTLLAKALAAE 341
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDT 141
+ VPF M GSEFVEV+ G+G++RIR LFK A+ P +I+IDEIDA+ +R +G
Sbjct: 342 STVPFISMNGSEFVEVIGGLGASRIRGLFKEARSRAPCIIYIDEIDAIGRKRSEGAGAGG 401
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+ + E E TLNQLL+E+DG +G GV+ LA+TN FDR I I
Sbjct: 402 G---FGGGSGEEEQTLNQLLVEMDGMGSGNGVVVLASTNRADVLDKALLRPGRFDRHISI 458
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL----PGWTGXXXXXXXXXXXXXXXXK 257
P R ++ +++ K+K+ + Y++ L PG+TG
Sbjct: 459 DLPTVLERKDMFELYMRKIKLDHAPQ--EYSQRLAALTPGFTGADIMNVCNESAIRAASN 516
Query: 258 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVEC 317
+ DM+ A+DR+ G ++R L + + A E G A++ +L + +A +
Sbjct: 517 KCHVVTHKDMEYALDRVLAGSEKRSRSLVEEEREVVAYHEAGHALVGWMLE-HTDALL-- 573
Query: 318 CDRISIVPRGQTLSQLVFHRLDD-ESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
+++I+PR T + L F + + ++F + +L R+ ++LGGR AE + +G+ TS A
Sbjct: 574 --KVTIIPR--TSAALGFAQYSPRDKHLFSK-DELFDRMCMMLGGRCAENLKFGRATSGA 628
>CGD|CAL0000075 [details] [associations]
symbol:AFG3 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005745 "m-AAA complex"
evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
Uniprot:Q5AJC2
Length = 795
Score = 559 (201.8 bits), Expect = 4.8e-54, P = 4.8e-54
Identities = 143/392 (36%), Positives = 209/392 (53%)
Query: 15 MFSQ-GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKT 73
+F+Q +KF DVAG DE+ EE+ E V++L++P ++K+G K P G +L GPPG GKT
Sbjct: 275 LFNQENEVKIKFKDVAGCDESKEEIMEFVKFLQDPHKYEKLGAKIPRGAILSGPPGTGKT 334
Query: 74 LVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATR 133
L+AKA AGEAGVPF ++GSEFVE+ VGVG++R+RDLFK A+ P++IF+DEIDA+
Sbjct: 335 LLAKATAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFKTAREMAPAIIFVDEIDAIGKE 394
Query: 134 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
R D ERE TLNQLL+E+DGFDT V+ LA TN
Sbjct: 395 RGNGRMGGND--------ERENTLNQLLVEMDGFDTTDHVVVLAGTNRPDILDKALLRPG 446
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSD---------SVDLSSYA--KN-------- 234
FDR I I P+ +GR +I K+H +K+K+ VD S Y KN
Sbjct: 447 RFDRHISIDVPDVEGRKQIFKVHLNKLKLKSVQDIDAKQKDVDFSKYQQLKNEEIEKLAG 506
Query: 235 -----LPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQG 289
PG+ G + ++ + + A++R+ G +++ L +
Sbjct: 507 RLAALTPGFAGADIANCCNEGALIAAREDAPAVDTYHFEQAIERVIAGLEKKSRILSPEE 566
Query: 290 QSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQ-TLSQLVFHRLDDESYMFERR 348
+ A E G A+ L+ Y + V ++SI+PRGQ L + L + Y+ +
Sbjct: 567 KKTVAYHEAGHAICGWFLQ-YADPLV----KVSIIPRGQGALGYAQY--LPKDQYLTSQE 619
Query: 349 PQLLHRLQVLLGGRAAEEVIYGQDTSRASVNY 380
Q HR+ + LGGR +EE+ + TS AS ++
Sbjct: 620 -QFKHRMIMTLGGRVSEELHFDTVTSGASDDF 650
>UNIPROTKB|Q5AJC2 [details] [associations]
symbol:AFG3 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
membrane" evidence=IDA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
Uniprot:Q5AJC2
Length = 795
Score = 559 (201.8 bits), Expect = 4.8e-54, P = 4.8e-54
Identities = 143/392 (36%), Positives = 209/392 (53%)
Query: 15 MFSQ-GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKT 73
+F+Q +KF DVAG DE+ EE+ E V++L++P ++K+G K P G +L GPPG GKT
Sbjct: 275 LFNQENEVKIKFKDVAGCDESKEEIMEFVKFLQDPHKYEKLGAKIPRGAILSGPPGTGKT 334
Query: 74 LVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATR 133
L+AKA AGEAGVPF ++GSEFVE+ VGVG++R+RDLFK A+ P++IF+DEIDA+
Sbjct: 335 LLAKATAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFKTAREMAPAIIFVDEIDAIGKE 394
Query: 134 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXX 193
R D ERE TLNQLL+E+DGFDT V+ LA TN
Sbjct: 395 RGNGRMGGND--------ERENTLNQLLVEMDGFDTTDHVVVLAGTNRPDILDKALLRPG 446
Query: 194 XFDRKIRIRAPNAKGRTEILKIHASKVKMSD---------SVDLSSYA--KN-------- 234
FDR I I P+ +GR +I K+H +K+K+ VD S Y KN
Sbjct: 447 RFDRHISIDVPDVEGRKQIFKVHLNKLKLKSVQDIDAKQKDVDFSKYQQLKNEEIEKLAG 506
Query: 235 -----LPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQG 289
PG+ G + ++ + + A++R+ G +++ L +
Sbjct: 507 RLAALTPGFAGADIANCCNEGALIAAREDAPAVDTYHFEQAIERVIAGLEKKSRILSPEE 566
Query: 290 QSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQ-TLSQLVFHRLDDESYMFERR 348
+ A E G A+ L+ Y + V ++SI+PRGQ L + L + Y+ +
Sbjct: 567 KKTVAYHEAGHAICGWFLQ-YADPLV----KVSIIPRGQGALGYAQY--LPKDQYLTSQE 619
Query: 349 PQLLHRLQVLLGGRAAEEVIYGQDTSRASVNY 380
Q HR+ + LGGR +EE+ + TS AS ++
Sbjct: 620 -QFKHRMIMTLGGRVSEELHFDTVTSGASDDF 650
>ZFIN|ZDB-GENE-030131-5391 [details] [associations]
symbol:spg7 "spastic paraplegia 7" species:7955
"Danio rerio" [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 SMART:SM00382
ZFIN:ZDB-GENE-030131-5391 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
CTD:6687 KO:K09552 OMA:MMDHEAK EMBL:AL954648 EMBL:BX470191
IPI:IPI00483001 RefSeq:XP_001923118.1 UniGene:Dr.105782
Ensembl:ENSDART00000098438 GeneID:794740 KEGG:dre:794740
NextBio:20931970 Uniprot:E7F2S4
Length = 788
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 141/376 (37%), Positives = 204/376 (54%)
Query: 4 QIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVL 63
Q+KM F + + GV F DVAG+ EA E++E V YLKNP+ + ++G K P G L
Sbjct: 280 QLKMAKFTI--VDGKSGKGVSFKDVAGMREAKMEVKEFVDYLKNPDRYLQLGAKVPKGSL 337
Query: 64 LEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIF 123
L GPPGCGKTL+AKA+A EA VPF MAGSEFVEV+ G+G+AR+R LFK A+ P +++
Sbjct: 338 LLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVIGGLGAARVRSLFKEARARAPCIVY 397
Query: 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXX 183
IDEIDA+ +R + ++ + E E TLNQLL+E+DG T VI LA+TN
Sbjct: 398 IDEIDAVGKKR-------STNMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 450
Query: 184 XXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY--AKNLPGWTGX 241
DR I I P + R EI + H +K++ D S A+ PG++G
Sbjct: 451 ILDNALMRPGRLDRHIFIDLPTLQERKEIFEQHLKILKLTQPADFYSLRLAELTPGFSGA 510
Query: 242 XXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVA 301
+G +SI + + AV+R+ G ++ L + Q A E G A
Sbjct: 511 DIANICNEAALHAAREGFKSIDTFSFEYAVERVIAGSVKKSKILSKEEQRVVAFHESGHA 570
Query: 302 MISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHR-LDDESYMFERRPQLLHRLQVLLG 360
++ LL E ++SI PR T + L F + L + ++F + QL R+ + LG
Sbjct: 571 LVGWLLEH-----TEAVMKVSIAPR--TNAALGFAQILPRDQFLFTKE-QLFERMCMALG 622
Query: 361 GRAAEEVIYGQDTSRA 376
GRA+E + + + T+ A
Sbjct: 623 GRASEAITFNKVTTGA 638
>SGD|S000000819 [details] [associations]
symbol:AFG3 "Component, with Yta12p, of the mitochondrial
inner membrane m-AAA pro" species:4932 "Saccharomyces cerevisiae"
[GO:0016887 "ATPase activity" evidence=ISS;IMP;IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0031966 "mitochondrial
membrane" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA;IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA;IMP]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0097002 "mitochondrial inner
boundary membrane" evidence=IDA] [GO:0001302 "replicative cell
aging" evidence=IMP] [GO:0002181 "cytoplasmic translation"
evidence=IMP] [GO:0045041 "protein import into mitochondrial
intermembrane space" evidence=TAS] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0006461 "protein complex assembly"
evidence=IMP] [GO:0006465 "signal peptide processing" evidence=IMP]
[GO:0005745 "m-AAA complex" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 SGD:S000000819
GO:GO:0005524 GO:GO:0006461 GO:GO:0046872 GO:GO:0008270
GO:GO:0006508 GO:GO:0008237 GO:GO:0001302 GO:GO:0004222
GO:GO:0016887 EMBL:BK006939 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
TIGRFAMs:TIGR01241 OMA:LYRFVTT EMBL:X81066 EMBL:X76643 EMBL:U18778
PIR:S46611 RefSeq:NP_010933.1 ProteinModelPortal:P39925 SMR:P39925
DIP:DIP-802N IntAct:P39925 MINT:MINT-563722 STRING:P39925
MEROPS:M41.002 PaxDb:P39925 PeptideAtlas:P39925
EnsemblFungi:YER017C GeneID:856737 KEGG:sce:YER017C CYGD:YER017c
OrthoDB:EOG4J14HG NextBio:982861 Genevestigator:P39925
GermOnline:YER017C GO:GO:0005745 GO:GO:0097002 GO:GO:0002181
GO:GO:0045041 GO:GO:0006465 Uniprot:P39925
Length = 761
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 136/361 (37%), Positives = 192/361 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
+ F +VAG DEA +E+ E V +LKNP + K+G K P G +L GPPG GKTL+AKA AGE
Sbjct: 285 ISFKNVAGCDEAKQEIMEFVHFLKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAGE 344
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF ++GSEFVE+ VGVG++R+RDLF +A+ PS+IFIDEIDA+ R G
Sbjct: 345 ANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKER-G-----K 398
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A ERE TLNQLL+E+DGF T V+ LA TN FDR I+I
Sbjct: 399 GGALGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQID 458
Query: 203 APNAKGRTEILKIHASKVKMS-----DSVDLSSYAKNL-PGWTGXXXXXXXXXXXXXXXX 256
+P+ GR +I +H ++ + D +LS L PG+TG
Sbjct: 459 SPDVNGRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAAR 518
Query: 257 KGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVE 316
I + A++R+ G +++ L + + A E G A+ L+ Y + +
Sbjct: 519 HNDPYITIHHFEQAIERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLK-YADPLL- 576
Query: 317 CCDRISIVPRGQ-TLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSR 375
++SI+PRGQ L + L + Y+ Q HR+ + LGGR +EE+ + TS
Sbjct: 577 ---KVSIIPRGQGALGYAQY--LPPDQYLISEE-QFRHRMIMALGGRVSEELHFPSVTSG 630
Query: 376 A 376
A
Sbjct: 631 A 631
>TIGR_CMR|GSU_1180 [details] [associations]
symbol:GSU_1180 "cell division protein FtsH"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
RefSeq:NP_952233.1 ProteinModelPortal:Q74DY5 SMR:Q74DY5
GeneID:2686793 KEGG:gsu:GSU1180 PATRIC:22025134 OMA:VCQWGMS
ProtClustDB:CLSK828230 BioCyc:GSUL243231:GH27-1166-MONOMER
Uniprot:Q74DY5
Length = 617
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 131/350 (37%), Positives = 197/350 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F DVAG++ EL+E+V YL++P+ F ++G K P GVLL GPPG GKTL+A+A+AGE
Sbjct: 172 VTFDDVAGMENPKMELKEIVDYLRDPKKFQRIGGKVPKGVLLVGPPGTGKTLLARAVAGE 231
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA-TRRQGIFKDT 141
A V F ++ S+F+E+ VGVG+ R+RDLF AK + PS+IFIDE+DA+ +R G+
Sbjct: 232 ADVTFLSISASQFIEMFVGVGAGRVRDLFATAKKSAPSIIFIDELDAVGRSRGAGL---- 287
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ERE TLNQLL E+DGFD+ VI +AATN FDR + I
Sbjct: 288 -----GGGHDEREQTLNQLLSEMDGFDSHDEVIVMAATNRPDVLDPALLRPGRFDRHVVI 342
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ + R +IL +H K+ + VDL+ A+ PG G + +
Sbjct: 343 DRPDWRDREKILHVHTRKIPLDKDVDLAVIARGTPGMAGADLENLVNEAAILAARENAAT 402
Query: 262 ILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRI 321
+ M+ A D++ +G +R+ + + Q + A E G +++ LL + ++
Sbjct: 403 VTMEHMERAKDKVLMGGERK-MFITEQEKRITAYHEAGHTIVAKLL-----PGTDPVHKV 456
Query: 322 SIVPRGQTLSQLVFHRL-DDESYMFERRPQLLHRLQVLLGGRAAEEVIYG 370
+I+PRGQ L V +L +D+ Y + + L++RL V LGGR AE ++G
Sbjct: 457 TIIPRGQALG--VTQQLPEDDRYHYPKS-YLMNRLSVALGGRQAERAVFG 503
>GENEDB_PFALCIPARUM|PF14_0616 [details] [associations]
symbol:PF14_0616 "i-AAA protease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
Uniprot:Q8IKI9
Length = 706
Score = 516 (186.7 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 113/282 (40%), Positives = 169/282 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F+DV G DE +EL+E++ YLKN + F K+G K P G+LL G PG GKTL+A+AIAGE
Sbjct: 251 VTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGE 310
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF Q +GSEF E+ VGVG+ RIR+LF+ AK + P ++FIDEIDA+ ++R +D
Sbjct: 311 ANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSS--RD-- 366
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
N+A + TLNQLL+ELDGF+ +G++ + ATN D+ I +
Sbjct: 367 ----NSAVR---MTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVP 419
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGR EILK++++K+ +S VDL ++ G TG +G +S+
Sbjct: 420 LPDIKGRYEILKMYSNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKSV 479
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS 304
+ ++ A DR+ VG +R+ L + ++ A E G +++
Sbjct: 480 DMNSIEQAFDRVVVGLQRKS-PLNEEEKNITAYHEGGHTLVN 520
Score = 242 (90.2 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 76/297 (25%), Positives = 143/297 (48%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
TLNQLL+ELDGF+ +G++ + ATN D+ I + P+ KGR EILK+
Sbjct: 373 TLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIKGRYEILKM 432
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
+++K+ +S VDL ++ G TG +G +S+ + ++ A DR+
Sbjct: 433 YSNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKSVDMNSIEQAFDRVV 492
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
VG +R+ L + ++ A E G H L + + + +I+PRG +L V
Sbjct: 493 VGLQRKS-PLNEEEKNITAYHEGG-----HTLVNFYTKGSDPVHKATIMPRGMSLG--VT 544
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLARKILT 393
++ ++ + + +L+GG +EE+I+G++ T+ S + L A+ +A+ ++
Sbjct: 545 WKIPISDKYSQKIKDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSD-LQKATHIAQSLVM 603
Query: 394 IW----NLEN-PMVIHGEPPPWRK-KVKFVGPRLDFEGSLYDDYGLTEPPVNFNLDD 444
+ N +N M +H + + K+K + L D Y + +N ++D+
Sbjct: 604 NYGVGINEDNISMFLHDKQNISEEMKIKI---DKSIQRILLDSYNRAKNVLNQHIDE 657
Score = 52 (23.4 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 427 LYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIG 486
L+D ++E + +D I + +L D Y R +L +H L + L+ + +
Sbjct: 618 LHDKQNISEE-MKIKIDKSI----QRILLDSYNRAKNVLNQHIDELHRIASALVEYETLT 672
Query: 487 REEIDFILNNYPPQTPISRLLEEE 510
+EI + Q +R ++++
Sbjct: 673 SDEIKLAMQGKCDQIRKNREIKQK 696
>UNIPROTKB|Q8IKI9 [details] [associations]
symbol:PF14_0616 "ATP-dependent protease la, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
Uniprot:Q8IKI9
Length = 706
Score = 516 (186.7 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 113/282 (40%), Positives = 169/282 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F+DV G DE +EL+E++ YLKN + F K+G K P G+LL G PG GKTL+A+AIAGE
Sbjct: 251 VTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGE 310
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPF Q +GSEF E+ VGVG+ RIR+LF+ AK + P ++FIDEIDA+ ++R +D
Sbjct: 311 ANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSS--RD-- 366
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
N+A + TLNQLL+ELDGF+ +G++ + ATN D+ I +
Sbjct: 367 ----NSAVR---MTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVP 419
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGR EILK++++K+ +S VDL ++ G TG +G +S+
Sbjct: 420 LPDIKGRYEILKMYSNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKSV 479
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS 304
+ ++ A DR+ VG +R+ L + ++ A E G +++
Sbjct: 480 DMNSIEQAFDRVVVGLQRKS-PLNEEEKNITAYHEGGHTLVN 520
Score = 242 (90.2 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 76/297 (25%), Positives = 143/297 (48%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
TLNQLL+ELDGF+ +G++ + ATN D+ I + P+ KGR EILK+
Sbjct: 373 TLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIKGRYEILKM 432
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
+++K+ +S VDL ++ G TG +G +S+ + ++ A DR+
Sbjct: 433 YSNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKSVDMNSIEQAFDRVV 492
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
VG +R+ L + ++ A E G H L + + + +I+PRG +L V
Sbjct: 493 VGLQRKS-PLNEEEKNITAYHEGG-----HTLVNFYTKGSDPVHKATIMPRGMSLG--VT 544
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLARKILT 393
++ ++ + + +L+GG +EE+I+G++ T+ S + L A+ +A+ ++
Sbjct: 545 WKIPISDKYSQKIKDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSD-LQKATHIAQSLVM 603
Query: 394 IW----NLEN-PMVIHGEPPPWRK-KVKFVGPRLDFEGSLYDDYGLTEPPVNFNLDD 444
+ N +N M +H + + K+K + L D Y + +N ++D+
Sbjct: 604 NYGVGINEDNISMFLHDKQNISEEMKIKI---DKSIQRILLDSYNRAKNVLNQHIDE 657
Score = 52 (23.4 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 427 LYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIG 486
L+D ++E + +D I + +L D Y R +L +H L + L+ + +
Sbjct: 618 LHDKQNISEE-MKIKIDKSI----QRILLDSYNRAKNVLNQHIDELHRIASALVEYETLT 672
Query: 487 REEIDFILNNYPPQTPISRLLEEE 510
+EI + Q +R ++++
Sbjct: 673 SDEIKLAMQGKCDQIRKNREIKQK 696
>RGD|727940 [details] [associations]
symbol:Spg7 "spastic paraplegia 7 homolog (human)" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA;ISO] [GO:0008089
"anterograde axon cargo transport" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0031966
"mitochondrial membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 SMART:SM00382 RGD:727940
GO:GO:0016021 GO:GO:0005524 GO:GO:0031966 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 GO:GO:0017111 HSSP:Q9WZ49 MEROPS:M41.006
CTD:6687 KO:K09552 EMBL:AY278739 IPI:IPI00327108 RefSeq:NP_852053.1
UniGene:Rn.16437 ProteinModelPortal:Q7TT47 SMR:Q7TT47 STRING:Q7TT47
PRIDE:Q7TT47 Ensembl:ENSRNOT00000047754 GeneID:353231
KEGG:rno:353231 UCSC:RGD:727940 NextBio:672619 ArrayExpress:Q7TT47
Genevestigator:Q7TT47 Uniprot:Q7TT47
Length = 744
Score = 451 (163.8 bits), Expect = 3.2e-52, Sum P(3) = 3.2e-52
Identities = 107/260 (41%), Positives = 143/260 (55%)
Query: 4 QIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVL 63
Q+KM F + + GV F DVAG+ EA E++E V YLK+PE F ++G K P G L
Sbjct: 289 QLKMARFTI--VDGKTGKGVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGAL 346
Query: 64 LEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIF 123
L GPPGCGKTL+AKA+A EA VPF MAG EFVEV+ G+G+AR+R LFK A+ P +++
Sbjct: 347 LLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVY 406
Query: 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXX 183
IDEIDA+ +R T+ + + E E TLNQLL+E+DG T VI LA+TN
Sbjct: 407 IDEIDAVGKKRS-----TS--MSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRAD 459
Query: 184 XXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY--AKNLPGWTGX 241
DR + I P + R EI + H +K++ S A+ PG++G
Sbjct: 460 VLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGT 519
Query: 242 XXXXXXXXXXXXXXXKGHES 261
HES
Sbjct: 520 AKKSKILSKEEQRVVAFHES 539
Score = 92 (37.4 bits), Expect = 3.2e-52, Sum P(3) = 3.2e-52
Identities = 33/101 (32%), Positives = 50/101 (49%)
Query: 277 GPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFH 336
G ++ L + Q A E G A++ LL E ++SI PR T + L F
Sbjct: 518 GTAKKSKILSKEEQRVVAFHESGHALVGWLLEH-----TEAVMKVSIAPR--TNAALGFS 570
Query: 337 R-LDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
+ L + Y+F + QL R+ + LGGRAAE + + + TS A
Sbjct: 571 QMLPRDQYLFTKE-QLFERMCMALGGRAAEAISFSRVTSGA 610
Score = 44 (20.5 bits), Expect = 3.2e-52, Sum P(3) = 3.2e-52
Identities = 24/113 (21%), Positives = 45/113 (39%)
Query: 417 VGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTV 476
+GP + F + G+ P + L + L+ Y T +L + L
Sbjct: 634 IGP-VSFPEAQEGLVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALA 692
Query: 477 KVLLNQKEIGREEIDFILNNYPPQTPISRLLEEENPGTLPFIKQEQCSQVEHA 529
LL ++ I E+I+ ++ PP P + ++ + K++Q S E A
Sbjct: 693 NALLEKEVINYEDIEALIGP-PPHGPKKMIAPQK---WIDAEKEKQASGEEEA 741
>UNIPROTKB|Q7TT47 [details] [associations]
symbol:Spg7 "Paraplegin" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 RGD:727940 GO:GO:0016021 GO:GO:0005524
GO:GO:0031966 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 eggNOG:COG0465 GeneTree:ENSGT00530000063070
HOGENOM:HOG000217277 HOVERGEN:HBG050184 GO:GO:0017111 HSSP:Q9WZ49
MEROPS:M41.006 CTD:6687 KO:K09552 EMBL:AY278739 IPI:IPI00327108
RefSeq:NP_852053.1 UniGene:Rn.16437 ProteinModelPortal:Q7TT47
SMR:Q7TT47 STRING:Q7TT47 PRIDE:Q7TT47 Ensembl:ENSRNOT00000047754
GeneID:353231 KEGG:rno:353231 UCSC:RGD:727940 NextBio:672619
ArrayExpress:Q7TT47 Genevestigator:Q7TT47 Uniprot:Q7TT47
Length = 744
Score = 451 (163.8 bits), Expect = 3.2e-52, Sum P(3) = 3.2e-52
Identities = 107/260 (41%), Positives = 143/260 (55%)
Query: 4 QIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVL 63
Q+KM F + + GV F DVAG+ EA E++E V YLK+PE F ++G K P G L
Sbjct: 289 QLKMARFTI--VDGKTGKGVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGAL 346
Query: 64 LEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIF 123
L GPPGCGKTL+AKA+A EA VPF MAG EFVEV+ G+G+AR+R LFK A+ P +++
Sbjct: 347 LLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVY 406
Query: 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXX 183
IDEIDA+ +R T+ + + E E TLNQLL+E+DG T VI LA+TN
Sbjct: 407 IDEIDAVGKKRS-----TS--MSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRAD 459
Query: 184 XXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY--AKNLPGWTGX 241
DR + I P + R EI + H +K++ S A+ PG++G
Sbjct: 460 VLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGT 519
Query: 242 XXXXXXXXXXXXXXXKGHES 261
HES
Sbjct: 520 AKKSKILSKEEQRVVAFHES 539
Score = 92 (37.4 bits), Expect = 3.2e-52, Sum P(3) = 3.2e-52
Identities = 33/101 (32%), Positives = 50/101 (49%)
Query: 277 GPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFH 336
G ++ L + Q A E G A++ LL E ++SI PR T + L F
Sbjct: 518 GTAKKSKILSKEEQRVVAFHESGHALVGWLLEH-----TEAVMKVSIAPR--TNAALGFS 570
Query: 337 R-LDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 376
+ L + Y+F + QL R+ + LGGRAAE + + + TS A
Sbjct: 571 QMLPRDQYLFTKE-QLFERMCMALGGRAAEAISFSRVTSGA 610
Score = 44 (20.5 bits), Expect = 3.2e-52, Sum P(3) = 3.2e-52
Identities = 24/113 (21%), Positives = 45/113 (39%)
Query: 417 VGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTV 476
+GP + F + G+ P + L + L+ Y T +L + L
Sbjct: 634 IGP-VSFPEAQEGLVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALA 692
Query: 477 KVLLNQKEIGREEIDFILNNYPPQTPISRLLEEENPGTLPFIKQEQCSQVEHA 529
LL ++ I E+I+ ++ PP P + ++ + K++Q S E A
Sbjct: 693 NALLEKEVINYEDIEALIGP-PPHGPKKMIAPQK---WIDAEKEKQASGEEEA 741
>ZFIN|ZDB-GENE-091113-41 [details] [associations]
symbol:yme1l1a "YME1-like 1a" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 ZFIN:ZDB-GENE-091113-41 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 GO:GO:0006508
GO:GO:0004222 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 EMBL:CU138525 IPI:IPI00962165
Ensembl:ENSDART00000110185 Uniprot:E7EZJ5
Length = 729
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 115/311 (36%), Positives = 183/311 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
+ F V G++EA ELQ++V +L+NP+ F +G K P G+LL GPPG GKTL+A+A+AGE
Sbjct: 292 ITFEHVKGVEEAKNELQDVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 351
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
A VPFY +GSEF E+ VGVG++RIR+LFK AK + P VIFIDE+D++ +R ++
Sbjct: 352 ADVPFYYASGSEFDEMFVGVGASRIRNLFKEAKASAPCVIFIDELDSVGGKRI----ESP 407
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
H Y+ R+T +NQLL E+DGF +GVI + ATN FD ++ +
Sbjct: 408 MHPYS-----RQT-INQLLAEMDGFKPNEGVIVIGATNFAEALDNALVRPGRFDMQVTVP 461
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ KGRTEIL+ + K+K+ ++D A+ G++G G + +
Sbjct: 462 IPDVKGRTEILEWYLKKIKVDSAIDAEIIARGTVGFSGAELENLVNQAALKAAADGKDLV 521
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
++ A D++ +GP+RR +E+ + ++ A E G A++++ Y + ++ +
Sbjct: 522 TMKELKFAKDKILMGPERRSVEIDKRNKTITAYHESGHAIVAY----YTKDAMPI-NKAT 576
Query: 323 IVPRGQTLSQL 333
I+PRG +L +
Sbjct: 577 IMPRGPSLGHV 587
Score = 298 (110.0 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 71/248 (28%), Positives = 130/248 (52%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
T+NQLL E+DGF +GVI + ATN FD ++ + P+ KGRTEIL+
Sbjct: 415 TINQLLAEMDGFKPNEGVIVIGATNFAEALDNALVRPGRFDMQVTVPIPDVKGRTEILEW 474
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
+ K+K+ ++D A+ G++G G + + ++ A D++
Sbjct: 475 YLKKIKVDSAIDAEIIARGTVGFSGAELENLVNQAALKAAADGKDLVTMKELKFAKDKIL 534
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
+GP+RR +E+ + ++ A E G A++++ Y + ++ +I+PRG +L +
Sbjct: 535 MGPERRSVEIDKRNKTITAYHESGHAIVAY----YTKDAMPI-NKATIMPRGPSLGHVSL 589
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLARKILT 393
L + E R QLL ++ V +GGR AEE+++G D TS AS ++ A+ +A+ ++T
Sbjct: 590 --LPENDRWSETRAQLLAQMDVSMGGRVAEELVFGNDQITSGASSDF-DGATKIAQMMVT 646
Query: 394 IWNLENPM 401
+ + + +
Sbjct: 647 RFGMSDKL 654
>CGD|CAL0002950 [details] [associations]
symbol:YME1 species:5476 "Candida albicans" [GO:0031942
"i-AAA complex" evidence=IEA] [GO:0006515 "misfolded or
incompletely synthesized protein catabolic process" evidence=IEA]
[GO:0001300 "chronological cell aging" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 CGD:CAL0002950 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.004
EMBL:AACQ01000068 EMBL:AACQ01000067 KO:K08955 RefSeq:XP_716504.1
RefSeq:XP_716560.1 ProteinModelPortal:Q5A458 SMR:Q5A458
STRING:Q5A458 GeneID:3641816 GeneID:3641839 KEGG:cal:CaO19.1252
KEGG:cal:CaO19.8836 Uniprot:Q5A458
Length = 687
Score = 498 (180.4 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
Identities = 116/308 (37%), Positives = 173/308 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V+F DV G DEA EL+E+V +LK+P F +G K P GVLL GPPG GKTL+A+A AGE
Sbjct: 222 VRFKDVQGCDEARAELEEIVDFLKDPSKFTGLGGKLPKGVLLTGPPGTGKTLLARATAGE 281
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
AGVPF+ M+GSEF E+ VGVG+ RIR+LF +A+ P++IFIDE+DA+ +R +
Sbjct: 282 AGVPFFFMSGSEFDELYVGVGAKRIRELFSQARDKAPAIIFIDELDAIGGKR-----NPK 336
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
D Y A Q TLNQLL+ELDGF +G+I + ATN FD+++ +
Sbjct: 337 DQAY--AKQ----TLNQLLVELDGFSQTEGIIIIGATNFPESLDKALTRPGRFDKEVIVD 390
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ +GR +ILK H V+ +D VD S A+ PG +G ++
Sbjct: 391 LPDVRGRIDILKHHMQNVETADDVDPSIIARGTPGLSGAELMNLVNQAAVHASQLSAPAV 450
Query: 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 322
+ + A D++ +G ++ + + + + A E G A+++ + + +
Sbjct: 451 DMNHFEWAKDKILMGAAKKKMVITEESRINTAYHEAGHAIMA----MFSKGATPLY-KAT 505
Query: 323 IVPRGQTL 330
I+PRG+ L
Sbjct: 506 ILPRGRAL 513
Score = 243 (90.6 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 65/264 (24%), Positives = 129/264 (48%)
Query: 156 TLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKI 215
TLNQLL+ELDGF +G+I + ATN FD+++ + P+ +GR +ILK
Sbjct: 344 TLNQLLVELDGFSQTEGIIIIGATNFPESLDKALTRPGRFDKEVIVDLPDVRGRIDILKH 403
Query: 216 HASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRLT 275
H V+ +D VD S A+ PG +G ++ + + A D++
Sbjct: 404 HMQNVETADDVDPSIIARGTPGLSGAELMNLVNQAAVHASQLSAPAVDMNHFEWAKDKIL 463
Query: 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335
+G ++ + + + + A E G A+++ + + +I+PRG+ L + F
Sbjct: 464 MGAAKKKMVITEESRINTAYHEAGHAIMA----MFSKGATPLY-KATILPRGRALG-ITF 517
Query: 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDT-SRASVNYLADASWLARKILTI 394
+L + + + + RL V +GG+ AEE+I G++ + + L++A+ +AR ++T
Sbjct: 518 -QLPEMDKVDMSKQECFARLDVCMGGKIAEEMINGKENVTSGCASDLSNATSVARAMVTS 576
Query: 395 WNLEN---PMVIHGEPPPWRKKVK 415
+ + + P+ + + W +++
Sbjct: 577 YGMSDKIGPVRLSDDWESWSPQIR 600
Score = 50 (22.7 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 427 LYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIG 486
L DD+ P + D+++ + L D RT LL L + + LL + +
Sbjct: 588 LSDDWESWSPQIRNMADNEV----RDYLLDSEKRTRKLLYDKRLELKRLAEGLLEYETLT 643
Query: 487 REEIDFILNNYP 498
+EE++ ++ P
Sbjct: 644 KEEMEKVVKGEP 655
>TAIR|locus:2094892 [details] [associations]
symbol:EMB2083 "embryo defective 2083" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004176 "ATP-dependent peptidase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0004252 "serine-type endopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000023 "maltose metabolic process"
evidence=RCA] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
SMART:SM00382 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AB023046
eggNOG:COG0465 GO:GO:0017111 IPI:IPI00526963 RefSeq:NP_566541.1
UniGene:At.38918 ProteinModelPortal:A8MPR5 SMR:A8MPR5 STRING:A8MPR5
PaxDb:A8MPR5 PRIDE:A8MPR5 EnsemblPlants:AT3G16290.1 GeneID:820876
KEGG:ath:AT3G16290 TAIR:At3g16290 HOGENOM:HOG000015086
InParanoid:A8MPR5 OMA:FFTHGEM PhylomeDB:A8MPR5
ProtClustDB:CLSN2688442 Genevestigator:A8MPR5 Uniprot:A8MPR5
Length = 876
Score = 510 (184.6 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 132/358 (36%), Positives = 200/358 (55%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
VKF+DVAG+ + EL+E+V++ + E++ + G+K P G+LL GPPG GKTL+AKA+AGE
Sbjct: 407 VKFTDVAGLGKIRLELEEIVKFFTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGE 466
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
AGV F+ ++ S+FVE+ VGVG++R+R L++ A+ N PSV+FIDE+DA+ R +G+ K
Sbjct: 467 AGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVFIDELDAVG-RERGLIK--- 522
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKG-VIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+ QER+ TLNQLL+ LDGF+ G+G VI +A+TN FDRKI I
Sbjct: 523 ----GSGGQERDATLNQLLVSLDGFE-GRGEVITIASTNRPDILDPALVRPGRFDRKIFI 577
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P GR EIL++HA K M++ +D + A G G G
Sbjct: 578 PKPGLIGRMEILQVHARKKPMAEDLDYMAVASMTDGMVGAELANIVEIAAINMMRDGRTE 637
Query: 262 ILSSDMDDAV---DRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECC 318
+ + D+ A +R + K R +E Q A E +A+++ +N +
Sbjct: 638 LTTDDLLQAAQIEERGMLDRKDRSLETWRQV----AINEAAMAVVAVNFPDMKNIEF--- 690
Query: 319 DRISIVPR-GQTLSQLVFHRLDDESY---MFERRPQLLHRLQVLLGGRAAEEVIYGQD 372
++I PR G+ L V ++D + M R+ +L + V L RAA+E+ YG+D
Sbjct: 691 --LTINPRAGRELGY-VRVKMDHIKFKEGMLSRQ-SILDHITVQLAPRAADELWYGED 744
Score = 49 (22.3 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 444 DDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYPPQTPI 503
+DI +L Y R +L R+ + + V+ L+ +K + ++E ++ Y P+
Sbjct: 786 NDIDVEALRILNMCYERAKEILGRNRTLMDEVVEKLVQKKSLTKQEFFTLVELYGSSKPM 845
>TIGR_CMR|CJE_1085 [details] [associations]
symbol:CJE_1085 "cell division protein FtsH, putative"
species:195099 "Campylobacter jejuni RM1221" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0051301 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0465 GO:GO:0017111 HOGENOM:HOG000217276 KO:K01417
RefSeq:YP_179078.1 ProteinModelPortal:Q5HUF7 SMR:Q5HUF7
STRING:Q5HUF7 GeneID:3231594 KEGG:cjr:CJE1085 PATRIC:20043979
OMA:HRSDERE ProtClustDB:CLSK2395802
BioCyc:CJEJ195099:GJC0-1111-MONOMER Uniprot:Q5HUF7
Length = 538
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 121/340 (35%), Positives = 194/340 (57%)
Query: 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIA 80
+ + F+DVAG+DE EL ELV +L+NP+ + + G+K P GVL+ GPPG GKTL+AKA+A
Sbjct: 147 SNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVA 206
Query: 81 GEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKD 140
GEAGVPF+ +GS FVE+ VG+G+ R+R+LF +AK+ PS++FIDEIDA+ R G
Sbjct: 207 GEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKAR-G---- 261
Query: 141 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIR 200
+ N ER++TLNQLL ++DGF+ GVI +AATN FDR+I
Sbjct: 262 ---EMSNV---ERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIF 315
Query: 201 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHE 260
+ P+ K R +IL+I+ K K +++++L+ AK G++G +
Sbjct: 316 LSLPDFKDRLKILEIYM-KDK-NNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSA 373
Query: 261 SILSSDMDDAVDRLTVGPKRRGIELGNQG-------QSRRAAT----EVG---VAMISHL 306
+ SD ++++ +G K++ + N+ Q+ +A + ++G + +I
Sbjct: 374 LVEESDFYAVLNKVLLG-KKKILSFNNEEKKIQATYQAAKALSAYYLDIGFEKITLIEDR 432
Query: 307 LRRYEN---AKVECCDRISIVPRGQTLSQLVFHRLDDESY 343
+ YE+ +K E +RI + G +L+++ ESY
Sbjct: 433 FKEYEHNIRSKSELINRIKVYLAGSRAMKLIYN----ESY 468
>DICTYBASE|DDB_G0293388 [details] [associations]
symbol:DDB_G0293388 "ATP-dependent metalloprotease"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0293388 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 EMBL:AAFI02000204
RefSeq:XP_629167.2 ProteinModelPortal:Q54BW7 STRING:Q54BW7
MEROPS:M41.A16 EnsemblProtists:DDB0304811 GeneID:8629188
KEGG:ddi:DDB_G0293388 InParanoid:Q54BW7 OMA:ICLAGRA Uniprot:Q54BW7
Length = 767
Score = 466 (169.1 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 113/295 (38%), Positives = 154/295 (52%)
Query: 12 YFAM-FSQ-GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPG 69
YFA + + T F DV GI E EEL+E+V YL +P ++ +G K P GVLL G PG
Sbjct: 284 YFAKEYDETNQTPTSFDDVKGIQEVKEELEEIVDYLLHPTKYNSIGAKLPKGVLLSGEPG 343
Query: 70 CGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 129
GKTL+A+AIAGEAGV F GS F E VGVGS R+R+LF A+ +P +IFIDEIDA
Sbjct: 344 TGKTLLARAIAGEAGVSFLYTTGSSFDEKYVGVGSRRVRELFNAAREKQPCIIFIDEIDA 403
Query: 130 LATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXX 189
+ R +T H ET L QLL E+DGF+ ++ + ATN
Sbjct: 404 VGKSR-----NTAHH--------NETLL-QLLTEMDGFEGNSQIMIIGATNAPNSLDPAL 449
Query: 190 XXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXX 249
FDR I + P+ KGR+EI+ + KVK + V + A+ PG+TG
Sbjct: 450 LRPGRFDRHISVPIPDMKGRSEIIDHYLKKVKHTVEVKADTIARATPGFTGADLSNLINT 509
Query: 250 XXXXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS 304
G E+I +DDA D + +G R + + + A E G A+++
Sbjct: 510 AAIKAVQNGKETISIKQIDDARDDILMGRARLNAVMSEEARRNTAYHEAGHALVA 564
Score = 284 (105.0 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 81/266 (30%), Positives = 127/266 (47%)
Query: 137 IFKDTTDHLYNAA-TQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXF 195
IF D D + + T TL QLL E+DGF+ ++ + ATN F
Sbjct: 396 IFIDEIDAVGKSRNTAHHNETLLQLLTEMDGFEGNSQIMIIGATNAPNSLDPALLRPGRF 455
Query: 196 DRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXX 255
DR I + P+ KGR+EI+ + KVK + V + A+ PG+TG
Sbjct: 456 DRHISVPIPDMKGRSEIIDHYLKKVKHTVEVKADTIARATPGFTGADLSNLINTAAIKAV 515
Query: 256 XKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKV 315
G E+I +DDA D + +G R + + + A E G A+++ + E A
Sbjct: 516 QNGKETISIKQIDDARDDILMGRARLNAVMSEEARRNTAYHEAGHALVAAMT---EAA-- 570
Query: 316 ECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--T 373
+ + +IV RGQ L + +L + ++ R Q++ RL + L GRAAEE+ +G D T
Sbjct: 571 DPIHKATIVQRGQALGMV--SQLPEMDHVQYTRKQMMARLAICLAGRAAEEIFFGVDGVT 628
Query: 374 SRASVNYLADASWLARKILTIWNLEN 399
S AS ++ AS LA ++T W + +
Sbjct: 629 SGASSDF-QQASSLAFSMITKWGMSD 653
Score = 51 (23.0 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 434 TEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFI 493
T P V ++D++ ++LL Y + L+ ++ + K V LL ++ + EEI I
Sbjct: 664 TSPEVQKIIEDEV----KDLLDKQYQYSKELIIKNRDNMEKLVGQLLEKETLTGEEILKI 719
Query: 494 LN 495
LN
Sbjct: 720 LN 721
>TAIR|locus:2076929 [details] [associations]
symbol:AT3G02450 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0009941 "chloroplast envelope" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR011546 Pfam:PF00004 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AC021640
EMBL:CP002686 GO:GO:0051301 GO:GO:0008270 GO:GO:0009941
GO:GO:0004222 GO:GO:0017111 HSSP:Q9LCZ4 EMBL:AY062811 EMBL:BT008384
IPI:IPI00524458 RefSeq:NP_186894.1 UniGene:At.27477
ProteinModelPortal:Q9M895 SMR:Q9M895 STRING:Q9M895 PRIDE:Q9M895
EnsemblPlants:AT3G02450.1 GeneID:821139 KEGG:ath:AT3G02450
InParanoid:Q9M895 OMA:SRRIYYN ProtClustDB:CLSN2685201
Genevestigator:Q9M895 Uniprot:Q9M895
Length = 622
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 110/271 (40%), Positives = 152/271 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
V F DV G+D A +EL E+V L+ + K+G + P GVLL GPPG GKTL+A+A+AGE
Sbjct: 331 VGFDDVEGVDSAKDELVEIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGE 390
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
AGVPF+ ++ SEFVE+ VG G+ARIRDLF A+ N PS+IFIDE+DA+ +R F D
Sbjct: 391 AGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELDAVGGKRGRSFND-- 448
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
ER+ TLNQLL E+DGF++ VI +AATN F RK+ +
Sbjct: 449 ---------ERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALCRPGRFSRKVLVA 499
Query: 203 APNAKGRTEILKIHASKVKMSDSVDL--SSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHE 260
P+ +GR +IL IH V + + L A PG+ G +G E
Sbjct: 500 EPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFVGADLANIVNEAALLAARRGGE 559
Query: 261 SILSSDMDDAVDRLTVG---PKRRGIELGNQ 288
++ D+ +A++R G + R LGN+
Sbjct: 560 AVAREDIMEAIERAKFGINDKEARPRTLGNE 590
>TAIR|locus:2174819 [details] [associations]
symbol:EMB3144 "EMBRYO DEFECTIVE 3144" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005886 "plasma membrane" evidence=ISM] [GO:0006508
"proteolysis" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009790
"embryo development" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] [GO:0016556
"mRNA modification" evidence=RCA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 EMBL:CP002688
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 GO:GO:0009790
GO:GO:0017111 IPI:IPI00527762 RefSeq:NP_201263.2 UniGene:At.28951
ProteinModelPortal:F4KF14 SMR:F4KF14 PRIDE:F4KF14
EnsemblPlants:AT5G64580.1 GeneID:836579 KEGG:ath:AT5G64580
OMA:LCWISAK Uniprot:F4KF14
Length = 855
Score = 431 (156.8 bits), Expect = 3.8e-44, Sum P(2) = 3.8e-44
Identities = 123/336 (36%), Positives = 169/336 (50%)
Query: 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVA 76
++ TGV F D AG + ELQE+VR LKN E F GI P GVLL GPPG GKTL+A
Sbjct: 307 AEEKTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 366
Query: 77 KAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQG 136
KAIAGEAG+PF+ G++FVE+ VGV ++R++DLF ++ PS+IFIDEIDA+ ++R G
Sbjct: 367 KAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASSRSYAPSIIFIDEIDAIGSKRGG 426
Query: 137 IFKDTTDHLYNAATQERETTLNQLLIELDGFD-TGKGVIFLAATNXXXXXXXXXXXXXXF 195
D ERE L Q+L E+DGF T V+ + ATN F
Sbjct: 427 --PDI-----GGGGAEREQGLLQILTEMDGFKVTTSQVLVIGATNRLDILDPALLRKGRF 479
Query: 196 DRKIRIRAPNAKGRTEILKIHASK--VKMSDSVD--LSSYAKNLPGWTGXXXXXXXXXXX 251
D+ IR+ P+ GR ILK+HA + D + L A+N +TG
Sbjct: 480 DKIIRVGLPSKDGRLAILKVHARNKFFRSEDEKEELLQEVAENTEDFTGAELQNVLNEAG 539
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPKRRG----IELGNQGQSRRAATEVGVAMIS-HL 306
K + I ++ +A+ R G G E+ + + R A E VA+++ +L
Sbjct: 540 ILTARKDLDYIGREELLEALKRQK-GTFETGQEDSTEVPEELKLRLAYREAAVAVLACYL 598
Query: 307 LRRYENAKVECCDRISIVP--RGQTLSQLVFHRLDD 340
+Y + I P R S VF R D
Sbjct: 599 PDQYRPISETDINSIRSQPNMRYSETSGRVFARKSD 634
Score = 68 (29.0 bits), Expect = 3.8e-44, Sum P(2) = 3.8e-44
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 452 ELLRDMYGRTV-----TLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYP--PQTPIS 504
E LRD Y R ++L+ + +AL + VLL + EI +EI I N P PQ P+
Sbjct: 705 EALRDEYMRFAVEKCSSILQEYQSALEEITDVLLEKGEIKADEIWNIYNTAPRIPQKPV- 763
Query: 505 RLLEE 509
R ++E
Sbjct: 764 RPVDE 768
>UNIPROTKB|Q58576 [details] [associations]
symbol:pan "Proteasome-activating nucleotidase"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0003924
"GTPase activity" evidence=IDA] [GO:0006184 "GTP catabolic process"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0022623
"proteasome-activating nucleotidase complex" evidence=IDA]
[GO:0043273 "CTPase activity" evidence=IDA] [GO:0043335 "protein
unfolding" evidence=IDA] HAMAP:MF_00553 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0003924 GO:GO:0016887 GO:GO:0010498
GO:GO:0022623 GO:GO:0043335 GO:GO:0043273 EMBL:L77117
GenomeReviews:L77117_GR PIR:G64446 RefSeq:NP_248170.1 PDB:3H43
PDB:3H4M PDB:3IPM PDBsum:3H43 PDBsum:3H4M PDBsum:3IPM
ProteinModelPortal:Q58576 SMR:Q58576 PRIDE:Q58576 GeneID:1452074
KEGG:mja:MJ_1176 eggNOG:COG1222 KO:K03420 OMA:RVNERKA
ProtClustDB:PRK03992 EvolutionaryTrace:Q58576 InterPro:IPR023501
TIGRFAMs:TIGR01242 Uniprot:Q58576
Length = 430
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 100/253 (39%), Positives = 147/253 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V++ D+ G+++ ++E++E+V LK+PELF+K+GI+PP G+LL GPPG GKTL+AKA+A
Sbjct: 167 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 226
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F ++ GSE V+ +G G++ ++D+FK AK PS+IFIDEIDA+A +R
Sbjct: 227 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR------- 279
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
TD L +E + TL QLL E+DGFD V + ATN FDR I +
Sbjct: 280 TDAL-TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV 338
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
AP+ KGR EILKIH K+ +++ V+L AK G G + +
Sbjct: 339 PAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 398
Query: 262 ILSSDMDDAVDRL 274
+ D AV+++
Sbjct: 399 VTMDDFRKAVEKI 411
>DICTYBASE|DDB_G0267492 [details] [associations]
symbol:DDB_G0267492 "peptidase M41, FtsH
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0267492 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
EMBL:AAFI02000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 RefSeq:XP_647076.1
ProteinModelPortal:Q55GV8 SMR:Q55GV8 MEROPS:M41.A18
EnsemblProtists:DDB0189322 GeneID:8615880 KEGG:ddi:DDB_G0267492
OMA:RINENNQ Uniprot:Q55GV8
Length = 720
Score = 450 (163.5 bits), Expect = 5.0e-42, P = 5.0e-42
Identities = 107/306 (34%), Positives = 165/306 (53%)
Query: 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84
F+DV G +EA ELQ+LV +L+NPE + + I P G+LL GPPG GKTL+AK++AGEA
Sbjct: 163 FADVMGAEEAKGELQDLVDFLRNPEKYYRRNIVMPKGILLVGPPGTGKTLLAKSLAGEAR 222
Query: 85 VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDH 144
V F + GSEF E VGVG+ R+R+LF+ A+ N P ++FIDEID++ R K H
Sbjct: 223 VSFITINGSEFEEAFVGVGAKRVRELFEAARKNSPCIVFIDEIDSVGGSRT---KRVNYH 279
Query: 145 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAP 204
A LNQLL+ELDGFD +GV+ +AATN FDR I++ P
Sbjct: 280 PSEA--------LNQLLVELDGFDGREGVMVMAATNYQDSLDTALIRSGRFDRIIQVPLP 331
Query: 205 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILS 264
+ K R I+ + ++ V+ ++ A++ PG++G I
Sbjct: 332 DGKARKSIIDHYLKDKPIASHVNTTTIAQSTPGFSGADLFNLVNWAALETTKHNLPEITM 391
Query: 265 SDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIV 324
+++A + L +G +R + + ++ + A E G A+++ + A+ + +I+
Sbjct: 392 EQLENAKENLMMGKERHSLLMSDEARKICAFHEAGHALVAIMT---PGART--VHKATIM 446
Query: 325 PRGQTL 330
PRG L
Sbjct: 447 PRGDAL 452
Score = 240 (89.5 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 69/266 (25%), Positives = 131/266 (49%)
Query: 137 IFKDTTDHLYNAATQE----RETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXX 192
+F D D + + T+ LNQLL+ELDGFD +GV+ +AATN
Sbjct: 260 VFIDEIDSVGGSRTKRVNYHPSEALNQLLVELDGFDGREGVMVMAATNYQDSLDTALIRS 319
Query: 193 XXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXX 252
FDR I++ P+ K R I+ + ++ V+ ++ A++ PG++G
Sbjct: 320 GRFDRIIQVPLPDGKARKSIIDHYLKDKPIASHVNTTTIAQSTPGFSGADLFNLVNWAAL 379
Query: 253 XXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYEN 312
I +++A + L +G +R + + ++ + A E G A+++ +
Sbjct: 380 ETTKHNLPEITMEQLENAKENLMMGKERHSLLMSDEARKICAFHEAGHALVAIMT---PG 436
Query: 313 AKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD 372
A+ + +I+PRG L LV L+ E F + QL+ ++ V +GGRAAEE+I G++
Sbjct: 437 ART--VHKATIMPRGDALG-LV-SMLEKEE-TFVTKKQLIAQMDVAMGGRAAEELILGKE 491
Query: 373 T-SRASVNYLADASWLARKILTIWNL 397
S+ + + + A+ +A+ +++ + +
Sbjct: 492 NISQGASSDIQKATSIAKAMVSNYGM 517
>ASPGD|ASPL0000032311 [details] [associations]
symbol:AN5747 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
EnsemblFungi:CADANIAT00003315 Uniprot:C8VFJ3
Length = 393
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 99/262 (37%), Positives = 141/262 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
+ F+ + G+++ + EL+E++ LKNPELF ++GIKPP GVLL GPPG GKTL+A+A+A
Sbjct: 134 INFAGIGGLNDQIRELREVIELPLKNPELFQRVGIKPPKGVLLYGPPGTGKTLLARAVAS 193
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ S V+ +G + IR++F AK ++P +IF+DEIDA+ RR F +
Sbjct: 194 SMETNFLKVVSSAIVDKYIGESARLIREMFGYAKEHEPCIIFMDEIDAIGGRR---FSEG 250
Query: 142 TDHLYNAATQERETTLNQLLIELDGFD-TGKGVIFLAATNXXXXXXXXXXXXXXFDRKIR 200
T +A +E + TL +LL +LDGFD GK I +A TN DRKI
Sbjct: 251 T-----SADREIQRTLMELLNQLDGFDYLGKTKIIMA-TNRPDTLDPALLRAGRLDRKIE 304
Query: 201 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHE 260
I PN GR EILKIH+S V+M +D S K G G +
Sbjct: 305 IPLPNEVGRLEILKIHSSTVQMEGDIDFESVVKMSDGLNGADLRNVVTEAGLFAIKDYRD 364
Query: 261 SILSSDMDDAVDRLTVGPKRRG 282
+I D + AV ++ K G
Sbjct: 365 AINQDDFNRAVRKVAEAKKLEG 386
>TIGR_CMR|CPS_1798 [details] [associations]
symbol:CPS_1798 "ATP-dependent peptidase, M41 family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
InterPro:IPR000642 InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR013093
Pfam:PF00004 Pfam:PF01434 Pfam:PF07724 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0006508
GO:GO:0004222 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
eggNOG:COG0542 RefSeq:YP_268529.1 ProteinModelPortal:Q484I6
STRING:Q484I6 GeneID:3520574 KEGG:cps:CPS_1798 PATRIC:21466749
HOGENOM:HOG000133952 ProtClustDB:CLSK741075
BioCyc:CPSY167879:GI48-1868-MONOMER Uniprot:Q484I6
Length = 1284
Score = 412 (150.1 bits), Expect = 6.9e-39, Sum P(2) = 6.9e-39
Identities = 120/379 (31%), Positives = 181/379 (47%)
Query: 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKT 73
++F+ DV G++ A L E+V +LK PE GIK P G L GPPG GKT
Sbjct: 839 SLFNHSLPDNSLDDVIGLERAKRRLIEVVSWLKAPEKLLNFGIKIPTGFLFSGPPGTGKT 898
Query: 74 LVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATR 133
L+AKA+AGE +PF+ +A SE G + I+ LF A+ PS+IFIDEIDA+A +
Sbjct: 899 LLAKAVAGECELPFFSVAASELSTPHSGGTTENIKQLFATARKYAPSIIFIDEIDAIAAQ 958
Query: 134 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF-LAATNXXXXXXXXXXXX 192
R D +D +++++ T+N LL E+DGF + +F +AATN
Sbjct: 959 RT----DNSD----GSSRDKNLTVNALLTEMDGFSIAEVPVFVMAATNHPQLLDSAITRP 1010
Query: 193 XXFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
FD I PN R K ASK K++ +L + G +
Sbjct: 1011 GRFDETIYCDLPNKNARLIFFKRFASKHKLNWQETELQQLVSSAQGMSSAEIDQVLRESI 1070
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYE 311
+ ++ + + + + R+ G I LG + + R A E +HLL
Sbjct: 1071 YQAVGE-NQQLTTEHIKQTMIRIVYGAPSDHIFLGAEEKRRTAYHEA-----AHLLAYKL 1124
Query: 312 NAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG- 370
+ D I+I PR Q L V R +E + +R +++H+LQVLL GR AE++ G
Sbjct: 1125 LFPKQPIDFITIEPRNQALG-FVATRASEEYESYSKR-RVMHKLQVLLAGRVAEKLCTGD 1182
Query: 371 -QDTSRASVNYLADASWLA 388
++ S + N + A+ LA
Sbjct: 1183 CEEVSTGASNDIEKATQLA 1201
Score = 45 (20.9 bits), Expect = 6.9e-39, Sum P(2) = 6.9e-39
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 464 LLRRHHAALLKTVKVLLNQKEIGREEIDFILN 495
LL+ H+ L + LL+++ + EEI+ I +
Sbjct: 1252 LLKDHYQQLTLVAETLLDKESLLGEEINLIFD 1283
>CGD|CAL0005827 [details] [associations]
symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
Length = 428
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 102/274 (37%), Positives = 141/274 (51%)
Query: 11 YYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPG 69
Y F G + F+ + G+ E + EL+E++ LKNPELF ++GIKPP GVLL GPPG
Sbjct: 159 YNMTTFEPGE--ISFNGIGGLTEQIRELREVIELPLKNPELFTRVGIKPPKGVLLYGPPG 216
Query: 70 CGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 129
GKTL+AKA+A G F S V+ +G + IR++F AK ++P +IF+DE+DA
Sbjct: 217 TGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYAKEHEPCIIFMDEVDA 276
Query: 130 LATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNXXXXXXXX 188
+ RR F + T +A +E + TL +LL ++DGFDT G+ I +A TN
Sbjct: 277 IGGRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLGQTKIIMA-TNRPDTLDPA 327
Query: 189 XXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXX 248
DRKI I PN GR EI KIH SKV D + K G+ G
Sbjct: 328 LLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFEAAVKMSDGFNGADIRNVVT 387
Query: 249 XXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRG 282
+ IL +D+ AV ++ K G
Sbjct: 388 EAGFFAIRDDRDYILQNDLMKAVRKVADVKKLEG 421
>POMBASE|SPCC1682.16 [details] [associations]
symbol:rpt4 "19S proteasome regulatory subunit Rpt4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISM] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=NAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
NextBio:20800360 Uniprot:O74445
Length = 388
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 99/262 (37%), Positives = 141/262 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
+ F+ V G++E + EL+E++ LKNPELF ++GIKPP GVLL GPPG GKTL+A+A+A
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAA 188
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
GV F ++ S V+ +G + IR++F AK ++P VIF+DEIDA+ RR F +
Sbjct: 189 SLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRR---FSEG 245
Query: 142 TDHLYNAATQERETTLNQLLIELDGFD-TGKGVIFLAATNXXXXXXXXXXXXXXFDRKIR 200
T +A +E + TL +LL ++DGFD G+ I +A TN DRKI
Sbjct: 246 T-----SADREIQRTLMELLNQMDGFDYLGQTKIIMA-TNRPDTLDPALLRPGRLDRKIE 299
Query: 201 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHE 260
I PN GR EILKIH KV +D + K G G + +
Sbjct: 300 IPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRD 359
Query: 261 SILSSDMDDAVDRLTVGPKRRG 282
++ SD+ A ++ K G
Sbjct: 360 YVIQSDLMSAARKVADLKKLEG 381
>SGD|S000005785 [details] [associations]
symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IMP] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0032968 "positive regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0019904 "protein domain specific binding"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
Uniprot:P53549
Length = 437
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 99/274 (36%), Positives = 140/274 (51%)
Query: 11 YYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPG 69
Y F QG + F + G+ E + EL+E++ LKNPE+F ++GIKPP GVLL GPPG
Sbjct: 168 YNMTSFEQGE--ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPG 225
Query: 70 CGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 129
GKTL+AKA+A G F S V+ +G + IR++F AK ++P +IF+DE+DA
Sbjct: 226 TGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDA 285
Query: 130 LATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNXXXXXXXX 188
+ RR F + T +A +E + TL +LL ++DGFD G+ I +A TN
Sbjct: 286 IGGRR---FSEGT-----SADREIQRTLMELLTQMDGFDNLGQTKIIMA-TNRPDTLDPA 336
Query: 189 XXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXX 248
DRK+ I PN GR EI KIH +KVK + D + K G+ G
Sbjct: 337 LLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396
Query: 249 XXXXXXXXKGHESILSSDMDDAVDRLTVGPKRRG 282
+ I D+ AV ++ K G
Sbjct: 397 EAGFFAIRDDRDHINPDDLMKAVRKVAEVKKLEG 430
>TIGR_CMR|CPS_1795 [details] [associations]
symbol:CPS_1795 "ATP-dependent peptidase, M41 family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
InterPro:IPR000642 InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR013093
Pfam:PF00004 Pfam:PF01434 Pfam:PF07724 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0006508
GO:GO:0004222 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
eggNOG:COG0542 HOGENOM:HOG000133952 ProtClustDB:CLSK741075
RefSeq:YP_268526.1 ProteinModelPortal:Q484I9 STRING:Q484I9
GeneID:3521104 KEGG:cps:CPS_1795 PATRIC:21466745
BioCyc:CPSY167879:GI48-1865-MONOMER Uniprot:Q484I9
Length = 1301
Score = 404 (147.3 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 113/380 (29%), Positives = 186/380 (48%)
Query: 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKT 73
+ F+Q K DV G+ A L +++ ++K P+ +K P G L GPPG GKT
Sbjct: 856 SFFNQSLPTEKLDDVIGLQRAKNRLLDVIEWMKFPDKLQNFDVKIPTGFLFAGPPGTGKT 915
Query: 74 LVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATR 133
+AKA+AGE G+PF+ ++ SE ++G S +I LF A+ PS++FIDEIDA+A++
Sbjct: 916 FLAKAVAGECGLPFFSVSASELSSTIIGGSSEKIMALFSVARKYAPSIVFIDEIDAIASQ 975
Query: 134 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF-LAATNXXXXXXXXXXXX 192
R +D+ + ++ER +N LL E+DGF + + +F +AATN
Sbjct: 976 RS---EDSQGN-----SRERNAIVNTLLTEMDGFSSSESPVFVMAATNYPQLLDKAILRP 1027
Query: 193 XXFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
FD I PN++ RT + A K + DL++ + G +
Sbjct: 1028 GRFDETIFCDLPNSEARTIFFEKFAQKQNLQWQQSDLTALVSSSQGMSSAEIDQVLREAI 1087
Query: 252 XXXXXKGHESILSSD-MDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRY 310
G E L+ + + + R+ G I+LG + + RR A ++++ L +
Sbjct: 1088 YQAV--GTEKPLTIEHIKQTIVRVVYGSPSENIKLGKE-EKRRTAFHEAAHLLTYKLL-F 1143
Query: 311 ENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG 370
N + D +I PR Q+L V R +E Y + +++++LQVLL GR AE++
Sbjct: 1144 PN---QIIDFATIEPRNQSLG-FVATRASEE-YESYSKTRVMNKLQVLLAGRVAEKLCTN 1198
Query: 371 Q--DTSRASVNYLADASWLA 388
+ S + N + A+ LA
Sbjct: 1199 NADEISTGASNDIEKATQLA 1218
Score = 38 (18.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 27 DVAGIDEAVEELQELV 42
D +D AVE L +++
Sbjct: 720 DTESVDHAVESLNDII 735
>ASPGD|ASPL0000010049 [details] [associations]
symbol:AN4236 species:162425 "Emericella nidulans"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001302 GO:GO:0030163
GO:GO:0017111 EMBL:AACD01000068 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP OrthoDB:EOG40VZZ2
RefSeq:XP_661840.1 ProteinModelPortal:Q5B5E4 STRING:Q5B5E4
EnsemblFungi:CADANIAT00004422 GeneID:2873654 KEGG:ani:AN4236.2
Uniprot:Q5B5E4
Length = 465
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 92/264 (34%), Positives = 142/264 (53%)
Query: 24 KFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
K++D+ G+D+ +EE+ E + + +K E F K+GIK P G L+ GPPG GKTL+A+A A E
Sbjct: 209 KYTDIGGLDKQIEEIVEAIVWPMKEAERFKKLGIKAPKGALMYGPPGTGKTLLARACAAE 268
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 269 TNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFIDELDAVGTKR---F-DSE 324
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
+ +E + T+ +LL +LDGF + + LAATN DRKI
Sbjct: 325 ----KSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPALLRSGRLDRKIEFP 380
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
PN + R IL+IH+ K+ + DSV+ + A++ + G KGH I
Sbjct: 381 LPNEEARANILQIHSRKMTVEDSVNWAELARSTDEFGGAQLKAVCVEAGMIALRKGHSKI 440
Query: 263 LSSDMDDAVDRLTVGPKRRGIELG 286
+ DA+ V K++ +G
Sbjct: 441 GHENYVDAIAE--VQAKKKDTNMG 462
>SGD|S000002284 [details] [associations]
symbol:CDC48 "AAA ATPase involved in multiple processes"
species:4932 "Saccharomyces cerevisiae" [GO:0005829 "cytosol"
evidence=IDA] [GO:0043332 "mating projection tip" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0030433 "ER-associated protein catabolic process"
evidence=IMP] [GO:0000837 "Doa10p ubiquitin ligase complex"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:1900182 "positive regulation of
protein localization to nucleus" evidence=IMP] [GO:0051228 "mitotic
spindle disassembly" evidence=IMP] [GO:0016320 "endoplasmic
reticulum membrane fusion" evidence=IMP] [GO:0034517 "ribophagy"
evidence=IMP] [GO:0071712 "ER-associated misfolded protein
catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IMP] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0043130 "ubiquitin binding" evidence=IDA]
[GO:0036266 "Cdc48p-Npl4p-Vms1p AAA ATPase complex" evidence=IDA]
[GO:0071630 "nucleus-associated proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0034727 "piecemeal
microautophagy of nucleus" evidence=IMP] [GO:0016236
"macroautophagy" evidence=IMP] [GO:0031134 "sister chromatid
biorientation" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0072671 "mitochondria-associated protein
catabolic process" evidence=IMP] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 SGD:S000002284 Pfam:PF02359
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0043332
EMBL:BK006938 GO:GO:0016887 eggNOG:COG0464 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 GO:GO:0016236 GO:GO:0031134
GO:GO:0043130 GO:GO:0034727 GO:GO:0016320 GO:GO:0034517
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OrthoDB:EOG47H8Z3 GO:GO:0034098 GO:GO:0030970
EMBL:X56956 EMBL:Z74174 PIR:S67669 RefSeq:NP_010157.1
ProteinModelPortal:P25694 SMR:P25694 DIP:DIP-2704N IntAct:P25694
MINT:MINT-547129 STRING:P25694 TCDB:3.A.16.1.2 PaxDb:P25694
PeptideAtlas:P25694 PRIDE:P25694 EnsemblFungi:YDL126C GeneID:851431
KEGG:sce:YDL126C CYGD:YDL126c GeneTree:ENSGT00700000104534
OMA:TIPRITW NextBio:968654 Genevestigator:P25694 GermOnline:YDL126C
GO:GO:0036266 GO:GO:0000837 GO:GO:0071629 GO:GO:0071712
GO:GO:0072671 GO:GO:0051228 GO:GO:0071630 GO:GO:1900182
Uniprot:P25694
Length = 835
Score = 392 (143.0 bits), Expect = 8.4e-37, Sum P(2) = 8.4e-37
Identities = 96/280 (34%), Positives = 144/280 (51%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P+LF +GIKPP GVL+ GPPG GKTL+A+A+A
Sbjct: 211 VGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKTLMARAVAN 270
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F+ A+ N P++IFIDEID++A +R D
Sbjct: 271 ETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKR-----DK 325
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T N + R ++QLL +DG V+ +AATN FDR++ I
Sbjct: 326 T----NGEVERR--VVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDI 379
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+A GR E+L+IH +K++D VDL + A G+ G + +
Sbjct: 380 GIPDATGRLEVLRIHTKNMKLADDVDLEALAAETHGYVGADIASLCSEAAMQQIREKMDL 439
Query: 262 I-LSSDMDDA--VDRLTVGPKRRGIELGNQGQSRRAATEV 298
I L D DA +D L V LGN S T V
Sbjct: 440 IDLDEDEIDAEVLDSLGVTMDNFRFALGNSNPSALRETVV 479
Score = 343 (125.8 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
Identities = 77/222 (34%), Positives = 115/222 (51%)
Query: 20 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKA 78
S V + DV G+DE EEL+E V Y + +P+ + K G+ P GVL GPPG GKTL+AKA
Sbjct: 481 SVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKA 540
Query: 79 IAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 138
+A E F + G E + + G + IRD+F +A+ P+V+F+DE+D++A R G
Sbjct: 541 VATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSL 600
Query: 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
D +R +NQLL E+DG + K V + ATN D+
Sbjct: 601 GDA------GGASDR--VVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQL 652
Query: 199 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
I + P+ R IL K + ++L++ AK G++G
Sbjct: 653 IYVPLPDENARLSILNAQLRKTPLEPGLELTAIAKATQGFSG 694
Score = 38 (18.4 bits), Expect = 8.4e-37, Sum P(2) = 8.4e-37
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 464 LLRRHHAALLKTVKVLLNQKEIGREE 489
+ + H A +KT K ++ E+ R E
Sbjct: 753 ITKEHFAEAMKTAKRSVSDAELRRYE 778
>GENEDB_PFALCIPARUM|PF10_0081 [details] [associations]
symbol:PF10_0081 "26S proteasome regulatory
subunit 4, putative" species:5833 "Plasmodium falciparum"
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0006508
"proteolysis" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
Length = 448
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 86/250 (34%), Positives = 139/250 (55%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G++ ++E++E V L +PEL++ +GIKPP GV+L GPPG GKTL+AKA+A E
Sbjct: 192 YADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVANET 251
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R++FK A+ + PS++FIDEIDA+ T+R ++ T+
Sbjct: 252 SATFLRVVGSELIQKYLGDGPKLVREMFKVAEEHAPSIVFIDEIDAVGTKR---YEATS- 307
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+E + T+ +LL +LDGFD+ V + ATN DRKI++
Sbjct: 308 ----GGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPN 363
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
P+ K + I +IH SK+ MS VDL + + +G + I
Sbjct: 364 PDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMKIT 423
Query: 264 SSDMDDAVDR 273
+D+ A D+
Sbjct: 424 QADLRKARDK 433
>UNIPROTKB|Q8IJW0 [details] [associations]
symbol:PF10_0081 "26S proteasome regulatory subunit 4,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
Length = 448
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 86/250 (34%), Positives = 139/250 (55%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G++ ++E++E V L +PEL++ +GIKPP GV+L GPPG GKTL+AKA+A E
Sbjct: 192 YADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVANET 251
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R++FK A+ + PS++FIDEIDA+ T+R ++ T+
Sbjct: 252 SATFLRVVGSELIQKYLGDGPKLVREMFKVAEEHAPSIVFIDEIDAVGTKR---YEATS- 307
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+E + T+ +LL +LDGFD+ V + ATN DRKI++
Sbjct: 308 ----GGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPN 363
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
P+ K + I +IH SK+ MS VDL + + +G + I
Sbjct: 364 PDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMKIT 423
Query: 264 SSDMDDAVDR 273
+D+ A D+
Sbjct: 424 QADLRKARDK 433
>FB|FBgn0039788 [details] [associations]
symbol:Rpt6R "Regulatory particle triple-A ATPase 6-related"
species:7227 "Drosophila melanogaster" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
GO:GO:0022008 GO:GO:0006200 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
GeneTree:ENSGT00550000074947 EMBL:AY119229 RefSeq:NP_651811.1
UniGene:Dm.13760 SMR:Q9VA54 IntAct:Q9VA54 MINT:MINT-308887
STRING:Q9VA54 EnsemblMetazoa:FBtr0085680 GeneID:43635
KEGG:dme:Dmel_CG2241 UCSC:CG2241-RA CTD:43635 FlyBase:FBgn0039788
InParanoid:Q9VA54 OMA:NDAYSAG OrthoDB:EOG41JWTK GenomeRNAi:43635
NextBio:834976 Uniprot:Q9VA54
Length = 399
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 85/259 (32%), Positives = 141/259 (54%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+D+ ++E++E++ +K+PELFD +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 145 VGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAHHTECT 204
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLY 146
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ + R + T D
Sbjct: 205 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR--LETGTGD--- 259
Query: 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNA 206
E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 260 ----SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPPPNE 315
Query: 207 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSD 266
+ R +ILKIH+ K+ ++ ++L A+ +PG +G + + D
Sbjct: 316 EARLDILKIHSRKMNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYALRERRVHVTQED 375
Query: 267 MDDAVDRLTVGPKRRGIEL 285
+ AV ++ + + + +
Sbjct: 376 FEMAVSKVMMKDSEKNMSI 394
>UNIPROTKB|F1MLV1 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
Length = 389
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 138/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 120 YNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 179
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 180 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 239
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 240 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 291
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIHA + +D + K G+ G
Sbjct: 292 PGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAG 351
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
H+ ++ D AV ++ K
Sbjct: 352 MFAIRADHDFVVQEDFMKAVRKVADSKK 379
>UNIPROTKB|Q2KIW6 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
Length = 389
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 138/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 120 YNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 179
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 180 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 239
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 240 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 291
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIHA + +D + K G+ G
Sbjct: 292 PGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAG 351
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
H+ ++ D AV ++ K
Sbjct: 352 MFAIRADHDFVVQEDFMKAVRKVADSKK 379
>UNIPROTKB|J9P1N0 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
Uniprot:J9P1N0
Length = 395
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 138/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 126 YNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 185
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 186 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 245
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 246 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 297
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIHA + +D + K G+ G
Sbjct: 298 PGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAG 357
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
H+ ++ D AV ++ K
Sbjct: 358 MFAIRADHDFVVQEDFMKAVRKVADSKK 385
>UNIPROTKB|P62333 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IC]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
Uniprot:P62333
Length = 389
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 138/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 120 YNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 179
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 180 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 239
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 240 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 291
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIHA + +D + K G+ G
Sbjct: 292 PGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAG 351
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
H+ ++ D AV ++ K
Sbjct: 352 MFAIRADHDFVVQEDFMKAVRKVADSKK 379
>UNIPROTKB|F1SFE6 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
ArrayExpress:F1SFE6 Uniprot:F1SFE6
Length = 403
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 138/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 134 YNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 193
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 194 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 253
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 254 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 305
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIHA + +D + K G+ G
Sbjct: 306 PGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAG 365
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
H+ ++ D AV ++ K
Sbjct: 366 MFAIRADHDFVVQEDFMKAVRKVADSKK 393
>UNIPROTKB|P62335 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:43179 "Spermophilus tridecemlineatus" [GO:0022624
"proteasome accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
Length = 389
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 138/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 120 YNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 179
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 180 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 239
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 240 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 291
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIHA + +D + K G+ G
Sbjct: 292 PGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAG 351
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
H+ ++ D AV ++ K
Sbjct: 352 MFAIRADHDFVVQEDFMKAVRKVADSKK 379
>MGI|MGI:1914339 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
GermOnline:ENSMUSG00000021832 Uniprot:P62334
Length = 389
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 138/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 120 YNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 179
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 180 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 239
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 240 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 291
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIHA + +D + K G+ G
Sbjct: 292 PGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAG 351
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
H+ ++ D AV ++ K
Sbjct: 352 MFAIRADHDFVVQEDFMKAVRKVADSKK 379
>RGD|1308825 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
Uniprot:Q32PW9
Length = 381
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 138/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 112 YNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 171
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 172 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 231
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 232 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 283
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIHA + +D + K G+ G
Sbjct: 284 PGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAG 343
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
H+ ++ D AV ++ K
Sbjct: 344 MFAIRADHDFVVQEDFMKAVRKVADSKK 371
>RGD|2318218 [details] [associations]
symbol:LOC100365869 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
Length = 403
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 138/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 134 YNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 193
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 194 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 253
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 254 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 305
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIHA + +D + K G+ G
Sbjct: 306 PGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAG 365
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
H+ ++ D AV ++ K
Sbjct: 366 MFAIRADHDFVVQEDFMKAVRKVADSKK 393
>ZFIN|ZDB-GENE-030131-304 [details] [associations]
symbol:psmc6 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
Uniprot:Q6DRD2
Length = 389
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/268 (33%), Positives = 137/268 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG G
Sbjct: 120 YNMSHEDPGSVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTG 179
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 180 KTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 239
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 240 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR 291
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN + R +ILKIH+ + +D + K G+ G
Sbjct: 292 PGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDGFNGADLRNVCTEAG 351
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPK 279
HE + D AV ++ K
Sbjct: 352 MFAIRADHEYVTQEDFMKAVRKVADSKK 379
>UNIPROTKB|F1NCS8 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
Uniprot:F1NCS8
Length = 403
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 89/258 (34%), Positives = 135/258 (52%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG GKTL+A+A+A
Sbjct: 144 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
+ F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+ RR F +
Sbjct: 204 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRR---FSEG 260
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T +A +E + TL +LL ++DGFDT V + ATN DRKI I
Sbjct: 261 T-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHI 315
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
PN + R +ILKIHA + +D + K G+ G H+
Sbjct: 316 DLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDF 375
Query: 262 ILSSDMDDAVDRLTVGPK 279
++ D AV ++ K
Sbjct: 376 VVQEDFMKAVRKVADSKK 393
>UNIPROTKB|Q5ZKX2 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
Uniprot:Q5ZKX2
Length = 389
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 89/258 (34%), Positives = 135/258 (52%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +S++ G+ E + EL+E++ L NPELF ++GI PP G LL GPPG GKTL+A+A+A
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
+ F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+ RR F +
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRR---FSEG 246
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T +A +E + TL +LL ++DGFDT V + ATN DRKI I
Sbjct: 247 T-----SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHI 301
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
PN + R +ILKIHA + +D + K G+ G H+
Sbjct: 302 DLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDF 361
Query: 262 ILSSDMDDAVDRLTVGPK 279
++ D AV ++ K
Sbjct: 362 VVQEDFMKAVRKVADSKK 379
>WB|WBGene00004504 [details] [associations]
symbol:rpt-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 95/271 (35%), Positives = 143/271 (52%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + + +SDV G+ E + EL+E+V L NPELF ++GI PP G LL GPPG G
Sbjct: 137 YKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTG 196
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P ++F+DEIDA+
Sbjct: 197 KTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIG 256
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNXXXXXXXXXX 190
RR F + T +A +E + TL +LL +LDGFD+ GK V + ATN
Sbjct: 257 GRR---FSEGT-----SADREIQRTLMELLNQLDGFDSLGK-VKVIMATNRPDTLDPALL 307
Query: 191 XXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXX 250
DRKI I PN + R EILKIH++K+ +D + K G++
Sbjct: 308 RPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEA 367
Query: 251 XXXXXXKGHESILSSDMDDAVDRLTVGPKRR 281
E ++ D AV + VG +R
Sbjct: 368 GMFAIRAEREFVIDEDFMKAVRK--VGDAKR 396
>UNIPROTKB|O17071 [details] [associations]
symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 95/271 (35%), Positives = 143/271 (52%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + + +SDV G+ E + EL+E+V L NPELF ++GI PP G LL GPPG G
Sbjct: 137 YKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTG 196
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+A+A + F ++ S V+ +G + IR++F A+ ++P ++F+DEIDA+
Sbjct: 197 KTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIG 256
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNXXXXXXXXXX 190
RR F + T +A +E + TL +LL +LDGFD+ GK V + ATN
Sbjct: 257 GRR---FSEGT-----SADREIQRTLMELLNQLDGFDSLGK-VKVIMATNRPDTLDPALL 307
Query: 191 XXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXX 250
DRKI I PN + R EILKIH++K+ +D + K G++
Sbjct: 308 RPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEA 367
Query: 251 XXXXXXKGHESILSSDMDDAVDRLTVGPKRR 281
E ++ D AV + VG +R
Sbjct: 368 GMFAIRAEREFVIDEDFMKAVRK--VGDAKR 396
>TAIR|locus:2831844 [details] [associations]
symbol:AtCDC48C "cell division cycle 48C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
EMBL:AL162751 GO:GO:0051301 GO:GO:0005856 GO:GO:0015031
GO:GO:0007049 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0009524 UniGene:At.33291 HOGENOM:HOG000223224
KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AK117125 EMBL:AK118571 EMBL:BT006485
IPI:IPI00543476 RefSeq:NP_568114.1 ProteinModelPortal:Q9LZF6
SMR:Q9LZF6 IntAct:Q9LZF6 STRING:Q9LZF6 PRIDE:Q9LZF6
EnsemblPlants:AT5G03340.1 GeneID:831870 KEGG:ath:AT5G03340
GeneFarm:1899 TAIR:At5g03340 InParanoid:Q9LZF6 OMA:AYRPIHK
PhylomeDB:Q9LZF6 Genevestigator:Q9LZF6 GermOnline:AT5G03340
Uniprot:Q9LZF6
Length = 810
Score = 395 (144.1 bits), Expect = 8.4e-36, P = 8.4e-36
Identities = 100/299 (33%), Positives = 153/299 (51%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + DV G+ + + +++ELV L++P+LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N PS+IFIDEID++A +R+
Sbjct: 264 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---- 319
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
N + R ++QLL +DG + VI + ATN FDR+I I
Sbjct: 320 -----NGEVERR--IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 372
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR E+L+IH +K+++ VDL +K+ G+ G + +
Sbjct: 373 GVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDV 432
Query: 262 I-LSSDMDDA--VDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS-HLLRRYENAKVE 316
I L D DA ++ + V + LGN S T V V +S + EN K E
Sbjct: 433 IDLEDDSIDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRE 491
Score = 350 (128.3 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 80/219 (36%), Positives = 118/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G++ ELQE V+Y +++PE F+K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 477 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 536
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ + P V+F DE+D++AT+R D
Sbjct: 537 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSAGDA 596
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
AA + LNQLL E+DG + K V + ATN D+ I I
Sbjct: 597 G----GAA----DRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYI 648
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ R I K K ++ VD+++ AK G++G
Sbjct: 649 PLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSG 687
>TAIR|locus:2085064 [details] [associations]
symbol:CDC48 "cell division cycle 48" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IMP] [GO:0009860 "pollen
tube growth" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0006486 "protein
glycosylation" evidence=RCA] [GO:0016310 "phosphorylation"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005794 GO:GO:0005618 GO:GO:0046686
GO:GO:0005635 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC015985
GO:GO:0005730 GO:GO:0051301 GO:GO:0005819 GO:GO:0048046
GO:GO:0015031 GO:GO:0007049 GO:GO:0009860 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0022626 GO:GO:0009846 GO:GO:0009524 EMBL:U37587 EMBL:AY065076
EMBL:AY094434 IPI:IPI00547533 PIR:S60112 RefSeq:NP_187595.1
UniGene:At.21739 UniGene:At.33291 ProteinModelPortal:P54609
SMR:P54609 IntAct:P54609 STRING:P54609 PaxDb:P54609 PRIDE:P54609
ProMEX:P54609 EnsemblPlants:AT3G09840.1 GeneID:820142
KEGG:ath:AT3G09840 GeneFarm:1893 TAIR:At3g09840
HOGENOM:HOG000223224 InParanoid:P54609 KO:K13525 OMA:QIANECH
PhylomeDB:P54609 ProtClustDB:CLSN2684913 Genevestigator:P54609
GermOnline:AT3G09840 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
Uniprot:P54609
Length = 809
Score = 394 (143.8 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 100/299 (33%), Positives = 154/299 (51%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + DV G+ + + +++ELV L++P+LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N PS+IFIDEID++A +R+
Sbjct: 264 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---- 319
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
N + R ++QLL +DG + VI + ATN FDR+I I
Sbjct: 320 -----NGEVERR--IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 372
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR E+L+IH +K+++ VDL +K+ G+ G + +
Sbjct: 373 GVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDV 432
Query: 262 I-LSSDMDDA--VDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS-HLLRRYENAKVE 316
I L D DA ++ + V + LGN S T V V +S + + EN K E
Sbjct: 433 IDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWNDIGGLENVKRE 491
Score = 352 (129.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 80/219 (36%), Positives = 118/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++D+ G++ ELQE V+Y +++PE F+K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 477 VSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 536
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ + P V+F DE+D++AT+R G
Sbjct: 537 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGG--GSG 594
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
D +R LNQLL E+DG + K V + ATN D+ I I
Sbjct: 595 GD---GGGAADR--VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYI 649
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ R I K K ++ VD+ + AK G++G
Sbjct: 650 PLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSG 688
>CGD|CAL0000732 [details] [associations]
symbol:CDC48 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0043332 "mating projection tip"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0000837 "Doa10p ubiquitin
ligase complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051228 "mitotic spindle
disassembly" evidence=IEA] [GO:0016320 "endoplasmic reticulum
membrane fusion" evidence=IEA] [GO:0034727 "piecemeal
microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0009986 "cell
surface" evidence=IDA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 394 (143.8 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 83/219 (37%), Positives = 128/219 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++ELV L++P+LF +GIKPP G+L+ GPPG GKT++A+A+A
Sbjct: 212 VGYDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVAN 271
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F+ A+ N PS+IFIDEID++A +R D
Sbjct: 272 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKR-----DK 326
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T N + R ++QLL +DG V+ +AATN FDR++ I
Sbjct: 327 T----NGEVERR--VVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDI 380
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A+GR EIL+IH +K++D VDL + A G+ G
Sbjct: 381 GVPDAEGRLEILRIHTKNMKLADDVDLEAIASETHGFVG 419
Score = 323 (118.8 bits), Expect = 3.6e-26, P = 3.6e-26
Identities = 73/222 (32%), Positives = 112/222 (50%)
Query: 20 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKA 78
+ V + D+ G+D EL+E V Y + +P+ + K G+ P GVL GPPG GKTL+AKA
Sbjct: 482 NVNVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKA 541
Query: 79 IAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 138
+A E F + G E + + G + IRD+F +A+ P+V+F+DE+D++A R G
Sbjct: 542 VATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSH 601
Query: 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
D +R +NQLL E+DG + K V + ATN D+
Sbjct: 602 GDA------GGASDR--VVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQL 653
Query: 199 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
I + P+ R IL+ + +DL+ AK G++G
Sbjct: 654 IYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKITHGFSG 695
>UNIPROTKB|Q59WG3 [details] [associations]
symbol:CDC48 "Putative uncharacterized protein CDC48"
species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0009986 "cell surface" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 394 (143.8 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 83/219 (37%), Positives = 128/219 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++ELV L++P+LF +GIKPP G+L+ GPPG GKT++A+A+A
Sbjct: 212 VGYDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVAN 271
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F+ A+ N PS+IFIDEID++A +R D
Sbjct: 272 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKR-----DK 326
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T N + R ++QLL +DG V+ +AATN FDR++ I
Sbjct: 327 T----NGEVERR--VVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDI 380
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A+GR EIL+IH +K++D VDL + A G+ G
Sbjct: 381 GVPDAEGRLEILRIHTKNMKLADDVDLEAIASETHGFVG 419
Score = 323 (118.8 bits), Expect = 3.6e-26, P = 3.6e-26
Identities = 73/222 (32%), Positives = 112/222 (50%)
Query: 20 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKA 78
+ V + D+ G+D EL+E V Y + +P+ + K G+ P GVL GPPG GKTL+AKA
Sbjct: 482 NVNVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKA 541
Query: 79 IAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 138
+A E F + G E + + G + IRD+F +A+ P+V+F+DE+D++A R G
Sbjct: 542 VATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSH 601
Query: 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRK 198
D +R +NQLL E+DG + K V + ATN D+
Sbjct: 602 GDA------GGASDR--VVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQL 653
Query: 199 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
I + P+ R IL+ + +DL+ AK G++G
Sbjct: 654 IYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKITHGFSG 695
>POMBASE|SPAC3A11.12c [details] [associations]
symbol:rpt5 "19S proteasome regulatory subunit Rpt5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPAC3A11.12c GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 GO:GO:0008540
OMA:GALMYGP EMBL:AB012136 PIR:T11634 RefSeq:XP_001713083.1
ProteinModelPortal:O14126 STRING:O14126 PRIDE:O14126
EnsemblFungi:SPAC3A11.12c.1 GeneID:3361462 KEGG:spo:SPAC3A11.12c
OrthoDB:EOG40VZZ2 NextBio:20811506 Uniprot:O14126
Length = 438
Score = 361 (132.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 77/218 (35%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+ + +EEL E +V ++ + F K+G+KPP G L+ GPPG GKTL+A+A A +
Sbjct: 183 RYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQ 242
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
+ F ++A + V++ +G G+ +RD F AK P++IFIDE+DA+ T+R F D+
Sbjct: 243 SNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKR---F-DSE 298
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF + V +AATN DRK+
Sbjct: 299 ----KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFP 354
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R IL+IH+ K+ + D ++ A++ + G
Sbjct: 355 LPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNG 392
Score = 40 (19.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 442 LDDDIAWRTEELLR 455
+DDDI W EEL R
Sbjct: 374 IDDDINW--EELAR 385
>GENEDB_PFALCIPARUM|PF11_0314 [details] [associations]
symbol:PF11_0314 "26S protease subunit
regulatory subunit 6a, putative" species:5833 "Plasmodium
falciparum" [GO:0004175 "endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
EMBL:AE014186 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
Length = 439
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 87/252 (34%), Positives = 136/252 (53%)
Query: 25 FSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G+D+ +E+L E +V + + E F+K+GIKPP GVL+ GPPG GKTL+A+A A +
Sbjct: 185 YSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQT 244
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++AG + V++ +G G+ +RD F AK P++IFIDE+DA+ T+R F
Sbjct: 245 NATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKR---FDSEL- 300
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGF T V +AATN DRKI +
Sbjct: 301 ----SGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPH 356
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
PN + R IL+IH+ K+ + V+ A++ + G +G I
Sbjct: 357 PNEESRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEI- 415
Query: 264 SSDMDDAVDRLT 275
D +D V+ +T
Sbjct: 416 --DHEDFVEGIT 425
>UNIPROTKB|Q8II60 [details] [associations]
symbol:PF11_0314 "26S protease subunit regulatory subunit
6a, putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000502
"proteasome complex" evidence=ISS] [GO:0004175 "endopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 EMBL:AE014186
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
Length = 439
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 87/252 (34%), Positives = 136/252 (53%)
Query: 25 FSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G+D+ +E+L E +V + + E F+K+GIKPP GVL+ GPPG GKTL+A+A A +
Sbjct: 185 YSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQT 244
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++AG + V++ +G G+ +RD F AK P++IFIDE+DA+ T+R F
Sbjct: 245 NATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKR---FDSEL- 300
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGF T V +AATN DRKI +
Sbjct: 301 ----SGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPH 356
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
PN + R IL+IH+ K+ + V+ A++ + G +G I
Sbjct: 357 PNEESRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEI- 415
Query: 264 SSDMDDAVDRLT 275
D +D V+ +T
Sbjct: 416 --DHEDFVEGIT 425
>TAIR|locus:2028200 [details] [associations]
symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
"proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
"cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
Uniprot:Q9MAK9
Length = 399
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 95/269 (35%), Positives = 139/269 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + + +S V G+ + + EL+E + L NPELF ++GIKPP GVLL GPPG G
Sbjct: 126 YNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTG 185
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+AIA F ++ S ++ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 186 KTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIG 245
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNXXXXXXXXXX 190
RR F + T +A +E + TL +LL +LDGFD GK V + ATN
Sbjct: 246 GRR---FSEGT-----SADREIQRTLMELLNQLDGFDQLGK-VKMIMATNRPDVLDPALL 296
Query: 191 XXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXX 250
DRKI I PN + R EILKIHAS + +D + K G+ G
Sbjct: 297 RPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEA 356
Query: 251 XXXXXXKGHESILSSDMDDAVDRLTVGPK 279
+ ++ D AV +L+ K
Sbjct: 357 GMFAIRAERDYVIHEDFMKAVRKLSEAKK 385
>DICTYBASE|DDB_G0288065 [details] [associations]
symbol:cdcD "CDC48 family AAA ATPase" species:44689
"Dictyostelium discoideum" [GO:0005615 "extracellular space"
evidence=IDA] [GO:0045335 "phagocytic vesicle" evidence=IDA]
[GO:0009617 "response to bacterium" evidence=IEP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0007049 "cell
cycle" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0051301 "cell division" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
dictyBase:DDB_G0288065 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
GO:GO:0005615 GO:GO:0045335 GO:GO:0009617 GO:GO:0051301
GenomeReviews:CM000154_GR GO:GO:0016887 GO:GO:0007049 GO:GO:0030433
HSSP:Q01853 eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 EMBL:AAFI02000109 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
ProtClustDB:CLSZ2429060 EMBL:U83085 RefSeq:XP_636910.1
ProteinModelPortal:P90532 SMR:P90532 STRING:P90532 PRIDE:P90532
EnsemblProtists:DDB0191154 GeneID:8626465 KEGG:ddi:DDB_G0288065
InParanoid:P90532 Uniprot:P90532
Length = 793
Score = 391 (142.7 bits), Expect = 2.1e-35, P = 2.1e-35
Identities = 83/219 (37%), Positives = 129/219 (58%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+ + + +++ELV L++P+LF +G+KPP G+LL GPPGCGKT++A+A+A
Sbjct: 199 VGYDDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIARAVAN 258
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N PS+IFIDEID++A +R+ T
Sbjct: 259 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE----KT 314
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+ ER ++QLL +DG + VI + ATN FDR+I I
Sbjct: 315 QGEV------ERRI-VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 367
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EI++IH +K+ ++VDL + A G+ G
Sbjct: 368 TIPDATGRLEIMRIHTKNMKLDETVDLEAVANETHGYVG 406
Score = 320 (117.7 bits), Expect = 7.3e-26, P = 7.3e-26
Identities = 75/217 (34%), Positives = 112/217 (51%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+ D+ G++ EL+E V+Y +++PE F K G++P GVL GPPGCGKTL+AKAIA E
Sbjct: 474 WEDIGGLEGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIANEC 533
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F + G E + + G A +R+LF +A+ P V+F DE+D++A R D
Sbjct: 534 QANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSRGSSQGDA-- 591
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+R +NQ+L E+DG + K V + ATN D+ I I
Sbjct: 592 ----GGAGDR--VINQILTEMDGMNAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 645
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ R ILK +K ++ VDL + G++G
Sbjct: 646 PDLPSRVAILKACLNKSPVAKDVDLEFLGQKTQGFSG 682
>TAIR|locus:2159996 [details] [associations]
symbol:RPT4A "regulatory particle triple-A ATPase 4A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
Length = 399
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 93/269 (34%), Positives = 139/269 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + + +S V G+ + + EL+E + L NPELF ++GIKPP GVLL GPPG G
Sbjct: 126 YNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTG 185
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+AIA F ++ S ++ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 186 KTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIG 245
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNXXXXXXXXXX 190
RR F + T +A +E + TL +LL +LDGFD GK V + ATN
Sbjct: 246 GRR---FSEGT-----SADREIQRTLMELLNQLDGFDNLGK-VKMIMATNRPDVLDPALL 296
Query: 191 XXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXX 250
DRKI I PN + R +ILKIHA+ + +D + K G+ G
Sbjct: 297 RPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEA 356
Query: 251 XXXXXXKGHESILSSDMDDAVDRLTVGPK 279
+ ++ D AV +L+ K
Sbjct: 357 GMFAIRAERDYVIHEDFMKAVRKLSEAKK 385
>WB|WBGene00004506 [details] [associations]
symbol:rpt-6 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0007091 "metaphase/anaphase transition of mitotic cell cycle"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0040011 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:Z98866
GO:GO:0007091 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
PIR:T27048 RefSeq:NP_499609.1 ProteinModelPortal:Q9XTT9 SMR:Q9XTT9
DIP:DIP-27139N IntAct:Q9XTT9 MINT:MINT-210855 STRING:Q9XTT9
PaxDb:Q9XTT9 EnsemblMetazoa:Y49E10.1.1 EnsemblMetazoa:Y49E10.1.2
GeneID:176661 KEGG:cel:CELE_Y49E10.1 UCSC:Y49E10.1 CTD:176661
WormBase:Y49E10.1 InParanoid:Q9XTT9 OMA:IDDQIRE NextBio:893504
Uniprot:Q9XTT9
Length = 416
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 80/215 (37%), Positives = 130/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+D+ ++E++E++ +K+PELFD +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 161 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLFGPPGTGKTLLARAVAHHTECT 220
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 221 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGS-------- 272
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI AP+
Sbjct: 273 -SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPAPD 331
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
K R +ILKIH+ K+ + ++++ A+ +PG +G
Sbjct: 332 EKARADILKIHSRKMNLMRGINMAKIAEQIPGASG 366
>UNIPROTKB|Q9FXT8 [details] [associations]
symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
KEGG:osa:4328642 Uniprot:Q9FXT8
Length = 400
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 94/269 (34%), Positives = 138/269 (51%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
+ M + V +S V G+ + + EL+E + L NPELF ++GIKPP GVLL GPPG G
Sbjct: 127 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTG 186
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+AIA F ++ S ++ +G + IR++F A+ ++P +IF+DEIDA+
Sbjct: 187 KTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG 246
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNXXXXXXXXXX 190
RR F + T +A +E + TL +LL +LDGFD GK V + ATN
Sbjct: 247 GRR---FSEGT-----SADREIQRTLMELLNQLDGFDELGK-VKMIMATNRPDVLDPALL 297
Query: 191 XXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXX 250
DRKI I PN + R E+LKIHA+ + +D + K G+ G
Sbjct: 298 RPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEA 357
Query: 251 XXXXXXKGHESILSSDMDDAVDRLTVGPK 279
+ ++ D AV +L K
Sbjct: 358 GMAAIRAERDYVVHEDFMKAVRKLNDAKK 386
>POMBASE|SPBC23G7.12c [details] [associations]
symbol:rpt6 "19S proteasome regulatory subunit Rpt6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IC] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC23G7.12c GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0005635 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03066
OMA:TEILRIH EMBL:U02280 PIR:S45176 RefSeq:NP_595870.1
ProteinModelPortal:P41836 IntAct:P41836 STRING:P41836 PRIDE:P41836
EnsemblFungi:SPBC23G7.12c.1 GeneID:2540487 KEGG:spo:SPBC23G7.12c
OrthoDB:EOG44N21J NextBio:20801614 Uniprot:P41836
Length = 403
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 78/214 (36%), Positives = 129/214 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+++ ++E++E++ +K+PELF+ +GI P G+LL GPPG GKTL+A+A+A
Sbjct: 147 VGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCK 206
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLY 146
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ + R +D
Sbjct: 207 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSR-------SDSSG 259
Query: 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNA 206
+ E + T+ +LL +LDGF+ K + + ATN DRKI P+A
Sbjct: 260 GSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSA 319
Query: 207 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R EIL+IH+ + ++ +DL S A+ + G +G
Sbjct: 320 EARAEILRIHSRSMNLTRGIDLKSIAEKMNGASG 353
>WB|WBGene00004503 [details] [associations]
symbol:rpt-3 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK
EMBL:FO081210 PIR:A88485 RefSeq:NP_498429.1
ProteinModelPortal:P46502 SMR:P46502 DIP:DIP-24412N IntAct:P46502
MINT:MINT-212949 STRING:P46502 PaxDb:P46502
EnsemblMetazoa:F23F12.6.1 EnsemblMetazoa:F23F12.6.2 GeneID:175925
KEGG:cel:CELE_F23F12.6 UCSC:F23F12.6.1 CTD:175925 WormBase:F23F12.6
GeneTree:ENSGT00550000074962 InParanoid:P46502 NextBio:890338
Uniprot:P46502
Length = 414
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 85/249 (34%), Positives = 130/249 (52%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
+ + D+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 158 ISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAA 217
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N PS+IFIDEIDA+AT+R F
Sbjct: 218 NTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKR---FDAQ 274
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 275 T-----GADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEF 329
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ + + + S++ +SD VDL + +G +
Sbjct: 330 PLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYV 389
Query: 262 ILSSDMDDA 270
+L+ D++ A
Sbjct: 390 VLTKDLEKA 398
>UNIPROTKB|G4N517 [details] [associations]
symbol:MGG_05193 "Cell division control protein 48"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0051301 EMBL:CM001233 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0043581 KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
RefSeq:XP_003712735.1 ProteinModelPortal:G4N517 SMR:G4N517
EnsemblFungi:MGG_05193T0 GeneID:2675720 KEGG:mgr:MGG_05193
Uniprot:G4N517
Length = 820
Score = 386 (140.9 bits), Expect = 8.2e-35, P = 8.2e-35
Identities = 98/294 (33%), Positives = 149/294 (50%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P+LF +GIKPP GVLL GPPG GKTL+A+A+A
Sbjct: 219 VGYDDIGGCRKQMAQIREMVELPLRHPQLFKSIGIKPPRGVLLYGPPGTGKTLMARAVAN 278
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F+ A+ N P++IFIDEID++A +R+
Sbjct: 279 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKT---- 334
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
N + R ++QLL +DG V+ +AATN FDR++ I
Sbjct: 335 -----NGEVERR--VVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDI 387
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR EIL+IH +K+ D VDL A G+ G + +
Sbjct: 388 GIPDPTGRLEILQIHTKNMKLGDDVDLEQIAAETHGYVGSDVAALCSEAAMQQIREKMDL 447
Query: 262 I-LSSDMDDA--VDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYEN 312
I L D DA +D L V + LG S A EV V + ++ R+E+
Sbjct: 448 IDLDEDTIDAEVLDSLGVTMENFRFALGVSNPS--ALREVAVVEVPNV--RWED 497
Score = 351 (128.6 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 78/219 (35%), Positives = 115/219 (52%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V++ D+ G+DE ++L+E V+Y + +PE F K G+ P GVL GPPG GKT++AKA+A
Sbjct: 493 VRWEDIGGLDEVKQDLREQVQYPVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVAN 552
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G + IRD+F +A+ P ++F+DE+D++A R G D
Sbjct: 553 ECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCIVFLDELDSIAKARGGSVGDA 612
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQLL E+DG + K V + ATN D I +
Sbjct: 613 ------GGASDR--VVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRLDSLIYV 664
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ GR ILK K +SD VDL A G++G
Sbjct: 665 PLPDELGRLSILKAQLRKTPVSDDVDLQYIANKTHGFSG 703
>FB|FBgn0020369 [details] [associations]
symbol:Rpt6 "Regulatory particle triple-A ATPase 6"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0004175
"endopeptidase activity" evidence=IDA;NAS] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0005838
"proteasome regulatory particle" evidence=ISS;IDA;NAS] [GO:0000502
"proteasome complex" evidence=NAS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=NAS] [GO:0006508 "proteolysis"
evidence=ISS;IDA;NAS] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0005875 EMBL:AE014298
GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
BRENDA:3.4.25.1 KO:K03066 OMA:QNIKVIM GeneTree:ENSGT00550000074947
EMBL:U97538 EMBL:AF043734 EMBL:AY051732 RefSeq:NP_608447.1
UniGene:Dm.2162 ProteinModelPortal:O18413 SMR:O18413 DIP:DIP-20087N
IntAct:O18413 MINT:MINT-759582 STRING:O18413 PaxDb:O18413
PRIDE:O18413 EnsemblMetazoa:FBtr0077189 GeneID:33105
KEGG:dme:Dmel_CG1489 CTD:33105 FlyBase:FBgn0020369
InParanoid:O18413 OrthoDB:EOG47D7XJ PhylomeDB:O18413
GenomeRNAi:33105 NextBio:781933 Bgee:O18413 GermOnline:CG1489
Uniprot:O18413
Length = 405
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 81/214 (37%), Positives = 128/214 (59%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+D+ ++E++E++ +K+PELFD +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 150 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 209
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLY 146
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ + R I +
Sbjct: 210 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSR--IESGS----- 262
Query: 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNA 206
E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 263 -GGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 321
Query: 207 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 322 EARLDILKIHSRKMNLTRGINLRKIAELMPGASG 355
>GENEDB_PFALCIPARUM|PFD0665c [details] [associations]
symbol:PFD0665c "26s proteasome aaa-ATPase
subunit Rpt3, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
EMBL:AL844503 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK ProtClustDB:PTZ00454 GO:GO:0005838
RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1 IntAct:Q8I1V1
MINT:MINT-1573247 PRIDE:Q8I1V1 EnsemblProtists:PFD0665c:mRNA
GeneID:812570 KEGG:pfa:PFD0665c EuPathDB:PlasmoDB:PF3D7_0413600
Uniprot:Q8I1V1
Length = 392
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 83/210 (39%), Positives = 124/210 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
VK++D+ G+D +E++E V L PEL++K+GI+PP G+L+ GPPG GKT++ KA+A
Sbjct: 135 VKYTDLGGLDMQKQEMKEAVELPLTCPELYEKIGIEPPMGILIYGPPGTGKTMLVKAVAN 194
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E V F + GSEFV+ +G G +RD+F+ A+ N PS+IFIDE+DA+AT+R F
Sbjct: 195 ETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEVDAIATKR---FDAQ 251
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 252 T-----GADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRLDRKIEF 306
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ K + I + SK+ +S V++ S+
Sbjct: 307 PLPDRKQKRLIFQTIISKMNVSSDVNIESF 336
>UNIPROTKB|Q8I1V1 [details] [associations]
symbol:PFD0665c "26S proteasome AAA-ATPase subunit RPT3,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
GO:GO:0006511 HSSP:Q01853 EMBL:AL844503 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK ProtClustDB:PTZ00454
GO:GO:0005838 RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1
IntAct:Q8I1V1 MINT:MINT-1573247 PRIDE:Q8I1V1
EnsemblProtists:PFD0665c:mRNA GeneID:812570 KEGG:pfa:PFD0665c
EuPathDB:PlasmoDB:PF3D7_0413600 Uniprot:Q8I1V1
Length = 392
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 83/210 (39%), Positives = 124/210 (59%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
VK++D+ G+D +E++E V L PEL++K+GI+PP G+L+ GPPG GKT++ KA+A
Sbjct: 135 VKYTDLGGLDMQKQEMKEAVELPLTCPELYEKIGIEPPMGILIYGPPGTGKTMLVKAVAN 194
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E V F + GSEFV+ +G G +RD+F+ A+ N PS+IFIDE+DA+AT+R F
Sbjct: 195 ETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEVDAIATKR---FDAQ 251
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 252 T-----GADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRLDRKIEF 306
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ K + I + SK+ +S V++ S+
Sbjct: 307 PLPDRKQKRLIFQTIISKMNVSSDVNIESF 336
>WB|WBGene00018991 [details] [associations]
symbol:F56F11.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0030163 HSSP:Q01853
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
EMBL:FO081497 RefSeq:NP_741098.1 ProteinModelPortal:Q8MXF1
SMR:Q8MXF1 STRING:Q8MXF1 PaxDb:Q8MXF1 PRIDE:Q8MXF1
EnsemblMetazoa:F56F11.4b GeneID:175403 KEGG:cel:CELE_F56F11.4
UCSC:F56F11.4b CTD:175403 WormBase:F56F11.4b InParanoid:Q8MXF1
OMA:TITISEN NextBio:888008 ArrayExpress:Q8MXF1 Uniprot:Q8MXF1
Length = 432
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 80/215 (37%), Positives = 126/215 (58%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+D ++E++E++ +K+PELFD +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 177 VGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 236
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 237 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGS-------- 288
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
E + T+ +LL +LDGF+ K + + ATN DRKI AP+
Sbjct: 289 -RGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPAPD 347
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
K R +ILKIH+ K+ + + + A+ +PG +G
Sbjct: 348 EKARAQILKIHSRKMNLMRGIRMDKIAEQIPGASG 382
>TAIR|locus:2101933 [details] [associations]
symbol:AtCDC48B "AT3G53230" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0045732 "positive
regulation of protein catabolic process" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005794 GO:GO:0046686 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005654 GO:GO:0005730 GO:GO:0051301
GO:GO:0005856 GO:GO:0015031 GO:GO:0007049 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0045732 GO:GO:0009524 EMBL:AL132958 HOGENOM:HOG000223224
KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AK228801 IPI:IPI00520856 PIR:T46169
RefSeq:NP_190891.1 UniGene:At.23168 ProteinModelPortal:Q9SCN8
SMR:Q9SCN8 STRING:Q9SCN8 PaxDb:Q9SCN8 PRIDE:Q9SCN8
EnsemblPlants:AT3G53230.1 GeneID:824489 KEGG:ath:AT3G53230
GeneFarm:1909 TAIR:At3g53230 InParanoid:Q9SCN8 OMA:DIRRYEE
PhylomeDB:Q9SCN8 Genevestigator:Q9SCN8 GermOnline:AT3G53230
Uniprot:Q9SCN8
Length = 815
Score = 385 (140.6 bits), Expect = 1.0e-34, P = 1.0e-34
Identities = 99/299 (33%), Positives = 152/299 (50%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + DV G+ + + +++ELV L++P+LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N PS+IFIDEID++A +R+ +
Sbjct: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG + VI + ATN FDR+I I
Sbjct: 325 ----------ERRI-VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 373
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR E+L+IH +K+++ VDL +K+ G+ G + +
Sbjct: 374 GVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCTEAALQCIREKMDV 433
Query: 262 I-LSSDMDDA--VDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS-HLLRRYENAKVE 316
I L + DA ++ + V LGN S T V V +S + EN K E
Sbjct: 434 IDLDDEEIDAEILNSMAVSNDHFQTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRE 492
Score = 352 (129.0 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 81/219 (36%), Positives = 119/219 (54%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G++ ELQE V+Y +++PE F+K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ + P V+F DE+D++AT+R D
Sbjct: 538 ECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDA 597
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
AA + LNQLL E+DG + K V + ATN D+ I I
Sbjct: 598 G----GAA----DRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 649
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ + R +I K K ++ VDL + AK G++G
Sbjct: 650 PLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSG 688
>DICTYBASE|DDB_G0284517 [details] [associations]
symbol:psmC6 "26S protease regulatory subunit S10B"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0284517
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000153_GR
GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
EMBL:AAFI02000066 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
RefSeq:XP_638541.1 ProteinModelPortal:Q54PJ1 STRING:Q54PJ1
EnsemblProtists:DDB0232968 GeneID:8624634 KEGG:ddi:DDB_G0284517
OMA:HAANITK ProtClustDB:CLSZ2429012 Uniprot:Q54PJ1
Length = 393
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 93/271 (34%), Positives = 136/271 (50%)
Query: 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
F M ++ V + ++ G+ + EL+E+V L PELF ++GIK P GVLL GPPG G
Sbjct: 124 FNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTG 183
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KTL+A+AIA F ++ S V+ +G + IR++F A+ ++P VIF+DEIDA+
Sbjct: 184 KTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIG 243
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
RR F + T +A +E + TL +LL ++DGFDT V + ATN
Sbjct: 244 GRR---FSEGT-----SADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLR 295
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXX 251
DRKI I PN GR ++LKIHA+ + VD + AK G+
Sbjct: 296 PGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAG 355
Query: 252 XXXXXKGHESILSSDMDDAVDRLTVGPKRRG 282
+ ++ D AV + K G
Sbjct: 356 MFAIRAERDYVMEEDFMKAVRKCQEAKKLEG 386
>UNIPROTKB|F1NSP7 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 IPI:IPI00585304 EMBL:AADN02003628
EMBL:AADN02003629 Ensembl:ENSGALT00000017367 ArrayExpress:F1NSP7
Uniprot:F1NSP7
Length = 439
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 183 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 242
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 243 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 297
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 298 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 354
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 355 PDEKTKKRIFQIHTSRMTLADDVTL 379
>UNIPROTKB|F1NTZ4 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 EMBL:AADN02003628 EMBL:AADN02003629
IPI:IPI00821206 Ensembl:ENSGALT00000037629 ArrayExpress:F1NTZ4
Uniprot:F1NTZ4
Length = 438
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 182 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 241
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 242 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 296
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 297 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 353
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 354 PDEKTKKRIFQIHTSRMTLADDVTL 378
>UNIPROTKB|A4FUZ3 [details] [associations]
symbol:PSMC1 "Proteasome (Prosome, macropain) 26S subunit,
ATPase, 1" species:9913 "Bos taurus" [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
OMA:FIRNQER GeneTree:ENSGT00550000074818 OrthoDB:EOG4D7Z5Q
EMBL:DAAA02030032 EMBL:BC123487 IPI:IPI00695877 UniGene:Bt.12340
SMR:A4FUZ3 STRING:A4FUZ3 Ensembl:ENSBTAT00000007135
InParanoid:A4FUZ3 Uniprot:A4FUZ3
Length = 440
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 298
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 299 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 356 PDEKTKKRIFQIHTSRMTLADDVTL 380
>UNIPROTKB|F1PQ40 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:AAEX03005924
RefSeq:NP_001238880.1 ProteinModelPortal:F1PQ40
Ensembl:ENSCAFT00000027737 GeneID:100688636 KEGG:cfa:100688636
Uniprot:F1PQ40
Length = 440
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 298
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 299 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 356 PDEKTKKRIFQIHTSRMTLADDVTL 380
>UNIPROTKB|B4DR63 [details] [associations]
symbol:PSMC1 "cDNA FLJ58247, highly similar to 26S protease
regulatory subunit 4" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0017111 GO:GO:0008233
EMBL:AL161662 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
UniGene:Hs.356654 HGNC:HGNC:9547 EMBL:AL355074 EMBL:AK299121
IPI:IPI01015427 SMR:B4DR63 STRING:B4DR63 Ensembl:ENST00000543772
Uniprot:B4DR63
Length = 367
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 111 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 170
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 171 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 225
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 226 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 282
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 283 PDEKTKKRIFQIHTSRMTLADDVTL 307
>UNIPROTKB|P62191 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0000502 "proteasome
complex" evidence=NAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000209 "protein polyubiquitination"
evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0002474 "antigen processing and presentation of peptide antigen
via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
presentation of exogenous peptide antigen via MHC class I,
TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0000082
GO:GO:0016887 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
OMA:FIRNQER CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:L02426 EMBL:CR457044
EMBL:BC000512 EMBL:BC016368 EMBL:BC073818 IPI:IPI00011126
PIR:A44468 RefSeq:NP_002793.2 UniGene:Hs.356654
ProteinModelPortal:P62191 SMR:P62191 IntAct:P62191
MINT:MINT-1141832 STRING:P62191 PhosphoSite:P62191 DMDM:49065817
PaxDb:P62191 PeptideAtlas:P62191 PRIDE:P62191 DNASU:5700
Ensembl:ENST00000261303 GeneID:5700 KEGG:hsa:5700 UCSC:uc001xyf.3
GeneCards:GC14P090722 H-InvDB:HIX0030744 HGNC:HGNC:9547
HPA:HPA000872 MIM:602706 neXtProt:NX_P62191 PharmGKB:PA33892
InParanoid:P62191 PhylomeDB:P62191 GenomeRNAi:5700 NextBio:22146
ArrayExpress:P62191 Bgee:P62191 CleanEx:HS_PSMC1
Genevestigator:P62191 GermOnline:ENSG00000100764 Uniprot:P62191
Length = 440
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 298
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 299 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 356 PDEKTKKRIFQIHTSRMTLADDVTL 380
>UNIPROTKB|F2Z5J1 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:CT737375
RefSeq:NP_001231080.1 UniGene:Ssc.1911 ProteinModelPortal:F2Z5J1
SMR:F2Z5J1 PRIDE:F2Z5J1 Ensembl:ENSSSCT00000002703 GeneID:100155274
KEGG:ssc:100155274 Uniprot:F2Z5J1
Length = 440
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 298
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 299 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 356 PDEKTKKRIFQIHTSRMTLADDVTL 380
>MGI|MGI:106054 [details] [associations]
symbol:Psmc1 "protease (prosome, macropain) 26S subunit,
ATPase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017025
"TBP-class protein binding" evidence=ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:106054
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER CTD:5700
OrthoDB:EOG4D7Z5Q EMBL:U39302 EMBL:BC003860 IPI:IPI00133428
RefSeq:NP_032973.1 UniGene:Mm.157105 ProteinModelPortal:P62192
SMR:P62192 IntAct:P62192 STRING:P62192 PhosphoSite:P62192
REPRODUCTION-2DPAGE:IPI00133428 PaxDb:P62192 PRIDE:P62192
Ensembl:ENSMUST00000021595 GeneID:19179 KEGG:mmu:19179
InParanoid:P62192 NextBio:295866 Bgee:P62192 Genevestigator:P62192
GermOnline:ENSMUSG00000021178 Uniprot:P62192
Length = 440
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 298
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 299 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 356 PDEKTKKRIFQIHTSRMTLADDVTL 380
>RGD|621097 [details] [associations]
symbol:Psmc1 "proteasome (prosome, macropain) 26S subunit,
ATPase, 1" species:10116 "Rattus norvegicus" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0017025 "TBP-class
protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621097 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
GeneTree:ENSGT00550000074818 CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:D50696
EMBL:BC063157 IPI:IPI00211733 RefSeq:NP_476464.1 UniGene:Rn.10526
ProteinModelPortal:P62193 SMR:P62193 IntAct:P62193 STRING:P62193
PRIDE:P62193 Ensembl:ENSRNOT00000005329 GeneID:117263
KEGG:rno:117263 UCSC:RGD:621097 InParanoid:P62193 NextBio:620148
Genevestigator:P62193 GermOnline:ENSRNOG00000003951 Uniprot:P62193
Length = 440
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 298
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 299 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 356 PDEKTKKRIFQIHTSRMTLADDVTL 380
>POMBASE|SPAC1565.08 [details] [associations]
symbol:cdc48 "AAA family ATPase Cdc48" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005789
"endoplasmic reticulum membrane" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IGI] [GO:0006906 "vesicle fusion"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISM]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=ISS] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IGI] [GO:0033554 "cellular response to
stress" evidence=IGI] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase
complex" evidence=ISO] [GO:0051230 "spindle disassembly"
evidence=TAS] [GO:0061166 "establishment of endoplasmic reticulum
localization involved in endoplasmic reticulum polarization at cell
division site" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 PomBase:SPAC1565.08 Pfam:PF02359
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0033554 GO:GO:0016887 GO:GO:0000790 GO:GO:0030433
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0006906 GO:GO:0033047 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0061166
OrthoDB:EOG47H8Z3 RefSeq:NP_593287.2 ProteinModelPortal:Q9P3A7
SMR:Q9P3A7 IntAct:Q9P3A7 STRING:Q9P3A7 PRIDE:Q9P3A7
EnsemblFungi:SPAC1565.08.1 GeneID:2542744 KEGG:spo:SPAC1565.08
OMA:IVTIHPC NextBio:20803789 GO:GO:0034098 GO:GO:0030970
GO:GO:0051230 Uniprot:Q9P3A7
Length = 815
Score = 383 (139.9 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 93/282 (32%), Positives = 141/282 (50%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + +++ELV L++P+LF +GIKPP G+L+ GPPG GKTL+A+A+A
Sbjct: 221 VGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN 280
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F+ A+ N P++IFIDEID++A +R+
Sbjct: 281 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKT---- 336
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
N + R ++QLL +DG V+ +AATN FDR++ +
Sbjct: 337 -----NGEVERR--VVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDV 389
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR EIL+IH +K++D VDL A G+ G + +
Sbjct: 390 GIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDM 449
Query: 262 I-LSSDMDDA--VDRLTVGPKRRGIELGNQGQSRRAATEVGV 300
I L D DA +D L V LG+ S T V V
Sbjct: 450 IDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSALRETVVEV 491
Score = 304 (112.1 bits), Expect = 5.2e-24, P = 5.2e-24
Identities = 71/219 (32%), Positives = 113/219 (51%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V++ D+ G++E EL+E V+ + E F + G+ P GVL GPPG GKTL+AKAIA
Sbjct: 494 VRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIAN 553
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G + +RD+F +A+ P V+F+DE+D++A R D+
Sbjct: 554 ECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGDS 613
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+ +NQLL E+DG ++ K V + ATN D+ I +
Sbjct: 614 GGG---------DRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYV 664
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ + R IL+ +++ VDL + AK G++G
Sbjct: 665 PLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSG 703
>UNIPROTKB|Q90732 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 EMBL:U60187
IPI:IPI00585304 PIR:S74197 RefSeq:NP_990289.1 UniGene:Gga.1071
ProteinModelPortal:Q90732 STRING:Q90732 PRIDE:Q90732 GeneID:395804
KEGG:gga:395804 CTD:5700 InParanoid:Q90732 OrthoDB:EOG4D7Z5Q
NextBio:20815872 Uniprot:Q90732
Length = 440
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/205 (38%), Positives = 124/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRY----DSN- 298
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 299 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 356 PDEKTKKRIFQIHTSRMTLADDVTL 380
>UNIPROTKB|P46470 [details] [associations]
symbol:psmc5 "26S protease regulatory subunit 8"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 KO:K03066 CTD:5705 EMBL:X81986 RefSeq:NP_001081635.1
UniGene:Xl.45 ProteinModelPortal:P46470 PRIDE:P46470 GeneID:397968
KEGG:xla:397968 Uniprot:P46470
Length = 461
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 77/214 (35%), Positives = 128/214 (59%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PE F+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 146 IGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 205
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLY 146
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ +R +G
Sbjct: 206 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSRLEG---------G 256
Query: 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNA 206
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 257 SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 316
Query: 207 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 317 EARLDILKIHSRKMNLTRGINLRKIAELMPGASG 350
>TAIR|locus:2147670 [details] [associations]
symbol:RPT6A "regulatory particle triple-A ATPase 6A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AF296836
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123395 EMBL:AB044348 EMBL:AY065174 EMBL:BT009668
IPI:IPI00542662 RefSeq:NP_568389.1 UniGene:At.10507
ProteinModelPortal:Q9C5U3 SMR:Q9C5U3 IntAct:Q9C5U3 STRING:Q9C5U3
PaxDb:Q9C5U3 PRIDE:Q9C5U3 EnsemblPlants:AT5G19990.1 GeneID:832121
KEGG:ath:AT5G19990 TAIR:At5g19990 InParanoid:Q9C5U3 KO:K03066
OMA:QNIKVIM PhylomeDB:Q9C5U3 ProtClustDB:CLSN2687185 Uniprot:Q9C5U3
Length = 419
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 79/214 (36%), Positives = 124/214 (57%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 163 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 222
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLY 146
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ + R D
Sbjct: 223 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD--- 279
Query: 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNA 206
E + T+ +LL +LDGF+ + L ATN DRKI PN
Sbjct: 280 ----SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNE 335
Query: 207 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ + +DL A+ + G +G
Sbjct: 336 ESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369
>TAIR|locus:2147685 [details] [associations]
symbol:AT5G20000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;TAS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
GO:GO:0017111 EMBL:AF296836 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 ProtClustDB:CLSN2687185
EMBL:AY039965 EMBL:AY079403 EMBL:AK226206 EMBL:AY087503
IPI:IPI00530138 RefSeq:NP_197500.1 UniGene:At.51251
ProteinModelPortal:Q94BQ2 SMR:Q94BQ2 IntAct:Q94BQ2 STRING:Q94BQ2
PaxDb:Q94BQ2 PRIDE:Q94BQ2 EnsemblPlants:AT5G20000.1 GeneID:832122
KEGG:ath:AT5G20000 GeneFarm:1515 TAIR:At5g20000 InParanoid:Q94BQ2
OMA:TEILRIH PhylomeDB:Q94BQ2 Uniprot:Q94BQ2
Length = 419
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 79/214 (36%), Positives = 124/214 (57%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 163 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 222
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLY 146
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ + R D
Sbjct: 223 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD--- 279
Query: 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNA 206
E + T+ +LL +LDGF+ + L ATN DRKI PN
Sbjct: 280 ----SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNE 335
Query: 207 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ + +DL A+ + G +G
Sbjct: 336 ESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369
>FB|FBgn0015282 [details] [associations]
symbol:Rpt2 "Regulatory particle triple-A ATPase 2"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS;IDA;NAS] [GO:0000502 "proteasome complex"
evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=NAS] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=IDA]
[GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle
elongation" evidence=IMP] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:AE014297 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008283 GO:GO:0006508 GO:GO:0006974
GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000022
eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540 KO:K03062
OMA:FIRNQER GeneTree:ENSGT00550000074818 EMBL:U39303 EMBL:AY058759
RefSeq:NP_524469.2 UniGene:Dm.2368 ProteinModelPortal:P48601
SMR:P48601 DIP:DIP-17276N IntAct:P48601 MINT:MINT-817128
STRING:P48601 PaxDb:P48601 PRIDE:P48601 EnsemblMetazoa:FBtr0084520
GeneID:42828 KEGG:dme:Dmel_CG5289 CTD:42828 FlyBase:FBgn0015282
InParanoid:P48601 OrthoDB:EOG4R4XJ3 PhylomeDB:P48601
BRENDA:3.4.25.1 ChiTaRS:Pros26.4 GenomeRNAi:42828 NextBio:830777
Bgee:P48601 GermOnline:CG5289 Uniprot:P48601
Length = 439
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/206 (37%), Positives = 125/206 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L GPPG GKTL+AKA+A +
Sbjct: 183 YADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 242
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 243 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY----DSN- 297
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 298 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 354
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLS 229
P+ K + I IH S++ +++ V+LS
Sbjct: 355 PDEKTKRRIFTIHTSRMTLAEDVNLS 380
>UNIPROTKB|F1NU79 [details] [associations]
symbol:PSMC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 EMBL:AADN02056696 IPI:IPI00574684
Ensembl:ENSGALT00000000469 Uniprot:F1NU79
Length = 412
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 157 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 216
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 217 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 267
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 268 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 327
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 328 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 362
>UNIPROTKB|P62194 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031531 "thyrotropin-releasing
hormone receptor binding" evidence=ISS] [GO:0008134 "transcription
factor binding" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
EMBL:AF069053 EMBL:BC146195 IPI:IPI00717227 RefSeq:NP_776866.1
UniGene:Bt.8062 ProteinModelPortal:P62194 SMR:P62194 STRING:P62194
PRIDE:P62194 Ensembl:ENSBTAT00000028048 GeneID:282015
KEGG:bta:282015 CTD:5705 GeneTree:ENSGT00550000074947
InParanoid:P62194 OrthoDB:EOG4MKNGF NextBio:20805880
ArrayExpress:P62194 GO:GO:0031531 Uniprot:P62194
Length = 406
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 151 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 210
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 261
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 262 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 321
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 322 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 356
>UNIPROTKB|P62195 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0031595
"nuclear proteasome complex" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=TAS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043069 "negative regulation of programmed cell
death" evidence=NAS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0031410 "cytoplasmic vesicle" evidence=IDA]
[GO:0003712 "transcription cofactor activity" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:L38810 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0016071 GO:GO:0045892 Reactome:REACT_115566 GO:GO:0045893
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0031410
GO:GO:0016887 GO:GO:0006366 GO:GO:0043069 GO:GO:0051436
EMBL:CH471109 GO:GO:0003712 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 EMBL:AC015651 ChiTaRS:PSMC5 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 KO:K03066
OMA:QNIKVIM CTD:5705 OrthoDB:EOG4MKNGF EMBL:D44467 EMBL:AK290758
EMBL:AK291878 EMBL:BC001932 EMBL:BC002367 EMBL:AF035309
IPI:IPI00023919 PIR:S60343 PIR:S65536 RefSeq:NP_001186092.1
RefSeq:NP_002796.4 UniGene:Hs.79387 PDB:2KRK PDB:3KW6 PDBsum:2KRK
PDBsum:3KW6 ProteinModelPortal:P62195 SMR:P62195 IntAct:P62195
MINT:MINT-5004394 STRING:P62195 PhosphoSite:P62195 DMDM:49065819
PaxDb:P62195 PRIDE:P62195 DNASU:5705 Ensembl:ENST00000310144
Ensembl:ENST00000375812 Ensembl:ENST00000580864
Ensembl:ENST00000581882 GeneID:5705 KEGG:hsa:5705 UCSC:uc002jcb.3
GeneCards:GC17P061904 HGNC:HGNC:9552 HPA:HPA017871 MIM:601681
neXtProt:NX_P62195 PharmGKB:PA33897 InParanoid:P62195
PhylomeDB:P62195 EvolutionaryTrace:P62195 GenomeRNAi:5705
NextBio:22166 ArrayExpress:P62195 Bgee:P62195 CleanEx:HS_PSMC5
Genevestigator:P62195 GermOnline:ENSG00000087191 Uniprot:P62195
Length = 406
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 151 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 210
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 261
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 262 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 321
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 322 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 356
>UNIPROTKB|P62197 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9823 "Sus scrofa" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
EMBL:X89718 EMBL:X89719 RefSeq:NP_999148.1 UniGene:Ssc.5451
ProteinModelPortal:P62197 SMR:P62197 STRING:P62197 PRIDE:P62197
Ensembl:ENSSSCT00000018819 GeneID:397043 KEGG:ssc:397043 CTD:397043
Uniprot:P62197
Length = 406
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 151 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 210
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 261
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 262 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 321
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 322 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 356
>UNIPROTKB|Q4RG45 [details] [associations]
symbol:GSTENG00035021001 "Chromosome 2 SCAF15106, whole
genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
[GO:0000502 "proteasome complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008134 "transcription factor binding" evidence=ISS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0043161 GO:GO:0000502
GO:GO:0017111 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:CAAE01015106
ProteinModelPortal:Q4RG45 STRING:Q4RG45 Uniprot:Q4RG45
Length = 406
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 151 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 210
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 261
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 262 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 321
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 322 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 356
>UNIPROTKB|Q6AZU7 [details] [associations]
symbol:Q6AZU7 "Putative uncharacterized protein"
species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0000502 GO:GO:0017111 GO:GO:0008134 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:BC077223
ProteinModelPortal:Q6AZU7 Uniprot:Q6AZU7
Length = 414
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 159 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 218
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 219 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 269
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 270 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 329
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 330 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 364
>UNIPROTKB|Q6P380 [details] [associations]
symbol:psmc5 "Putative uncharacterized protein MGC75584"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000502
"proteasome complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008134
"transcription factor binding" evidence=ISS] [GO:0031531
"thyrotropin-releasing hormone receptor binding" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0000502 GO:GO:0017111 GO:GO:0008134
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
HOGENOM:HOG000225143 KO:K03066 CTD:5705 OrthoDB:EOG4MKNGF
GO:GO:0031531 EMBL:BC064153 RefSeq:NP_989358.1 UniGene:Str.3783
ProteinModelPortal:Q6P380 STRING:Q6P380 GeneID:394988
KEGG:xtr:394988 Xenbase:XB-GENE-999928 InParanoid:Q6P380
Uniprot:Q6P380
Length = 414
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 159 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 218
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 219 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 269
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 270 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 329
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 330 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 364
>MGI|MGI:105047 [details] [associations]
symbol:Psmc5 "protease (prosome, macropain) 26S subunit,
ATPase 5" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005102 "receptor binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005675 "holo TFIIH complex" evidence=ISA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO;ISA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
evidence=ISO] [GO:0031531 "thyrotropin-releasing hormone receptor
binding" evidence=ISO] [GO:0031595 "nuclear proteasome complex"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:105047
GO:GO:0005524 GO:GO:0005737 GO:GO:0045892 GO:GO:0043161
GO:GO:0031410 GO:GO:0017111 GO:GO:0008134 GO:GO:0005675
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03066 OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947
OrthoDB:EOG4MKNGF GO:GO:0031531 EMBL:Z54219 EMBL:AK010505
EMBL:AK135451 EMBL:AK145703 IPI:IPI00135640 PIR:S61923
RefSeq:NP_032976.1 UniGene:Mm.272361 ProteinModelPortal:P62196
SMR:P62196 IntAct:P62196 STRING:P62196 PhosphoSite:P62196
REPRODUCTION-2DPAGE:IPI00135640 REPRODUCTION-2DPAGE:P62196
PaxDb:P62196 PRIDE:P62196 Ensembl:ENSMUST00000021049 GeneID:19184
KEGG:mmu:19184 InParanoid:P62196 NextBio:295882 Bgee:P62196
Genevestigator:P62196 GermOnline:ENSMUSG00000020708 Uniprot:P62196
Length = 406
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 151 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 210
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 261
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 262 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 321
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 322 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 356
>RGD|708376 [details] [associations]
symbol:Psmc5 "proteasome (prosome, macropain) 26S subunit,
ATPase, 5" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO;ISS] [GO:0005102 "receptor
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008134 "transcription factor binding" evidence=ISO;ISS]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0017025 "TBP-class
protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] [GO:0031410 "cytoplasmic vesicle"
evidence=IEA;ISO] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISO;ISS] [GO:0031595 "nuclear proteasome
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:708376 GO:GO:0005524
GO:GO:0005737 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
GO:GO:0016887 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066
OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF
GO:GO:0031531 EMBL:D83521 EMBL:AB000491 EMBL:AB000493 EMBL:BC058462
IPI:IPI00213587 PIR:T43799 RefSeq:NP_112411.1 UniGene:Rn.10972
ProteinModelPortal:P62198 SMR:P62198 IntAct:P62198 STRING:P62198
PhosphoSite:P62198 World-2DPAGE:0004:P62198 PRIDE:P62198
Ensembl:ENSRNOT00000013997 GeneID:81827 KEGG:rno:81827
UCSC:RGD:708376 InParanoid:P62198 NextBio:615767
ArrayExpress:P62198 Genevestigator:P62198
GermOnline:ENSRNOG00000010038 GO:GO:0031595 Uniprot:P62198
Length = 406
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 151 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 210
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 261
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 262 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 321
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 322 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 356
>ZFIN|ZDB-GENE-030131-6547 [details] [associations]
symbol:psmc5 "proteasome (prosome, macropain) 26S
subunit, ATPase, 5" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0031531
"thyrotropin-releasing hormone receptor binding" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=IEA;ISS] [GO:0008134
"transcription factor binding" evidence=ISS] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-6547 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0000502 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM CTD:5705
GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
EMBL:CU459020 EMBL:BC078375 IPI:IPI00482097 RefSeq:NP_001003740.1
UniGene:Dr.75934 STRING:Q6AZC1 Ensembl:ENSDART00000106191
GeneID:445285 KEGG:dre:445285 InParanoid:Q6AZC1 NextBio:20832032
Uniprot:Q6AZC1
Length = 406
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/215 (36%), Positives = 129/215 (60%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 151 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 210
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G G+ +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEG--------- 261
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF+ K + + ATN DRKI PN
Sbjct: 262 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 321
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +ILKIH+ K+ ++ ++L A+ +PG +G
Sbjct: 322 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 356
>SGD|S000002165 [details] [associations]
symbol:RPT2 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
evidence=IDA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IMP] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=IDA] [GO:0045732 "positive regulation of
protein catabolic process" evidence=IDA] [GO:0043171 "peptide
catabolic process" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000002165 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006938 GO:GO:0016887 GO:GO:0043171 GO:GO:0006511
GO:GO:0045732 EMBL:Z48432 GO:GO:0070682 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T
PDBsum:4B4T KO:K03062 OMA:FIRNQER GeneTree:ENSGT00550000074818
OrthoDB:EOG4FN7S6 EMBL:X81070 EMBL:L17040 EMBL:Z74055 PIR:S46613
RefSeq:NP_010277.1 ProteinModelPortal:P40327 SMR:P40327
DIP:DIP-6282N IntAct:P40327 MINT:MINT-632695 STRING:P40327
PaxDb:P40327 PeptideAtlas:P40327 PRIDE:P40327 EnsemblFungi:YDL007W
GeneID:851557 KEGG:sce:YDL007W NextBio:968983 Genevestigator:P40327
GermOnline:YDL007W Uniprot:P40327
Length = 437
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 85/261 (32%), Positives = 134/261 (51%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G++ ++E++E V L +PEL+++MGIKPP GV+L G PG GKTL+AKA+A +
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G R +FK A N PS++FIDEIDA+ T+R D+
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRY----DSN- 295
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD V + ATN DRKI
Sbjct: 296 ---SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFEN 352
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
P+ + +IL IH SK+ +S+ V+L + +G + +
Sbjct: 353 PDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVT 412
Query: 264 SSDMDDAVDRLTVGPKRRGIE 284
+ D A +R+ +E
Sbjct: 413 AEDFKQAKERVMKNKVEENLE 433
>ASPGD|ASPL0000069340 [details] [associations]
symbol:AN7254 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEP]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0051228
"mitotic spindle disassembly" evidence=IEA] [GO:0016320
"endoplasmic reticulum membrane fusion" evidence=IEA] [GO:0034727
"piecemeal microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0043332 "mating projection tip" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0034098 "Cdc48p-Npl4p-Ufd1p
AAA ATPase complex" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000837 "Doa10p ubiquitin ligase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0006950 GO:GO:0015031 GO:GO:0007049 EMBL:BN001304 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AACD01000124 RefSeq:XP_680523.1
STRING:Q5AWS6 PRIDE:Q5AWS6 GeneID:2869922 KEGG:ani:AN7254.2
OrthoDB:EOG47H8Z3 Uniprot:Q5AWS6
Length = 823
Score = 380 (138.8 bits), Expect = 3.7e-34, P = 3.7e-34
Identities = 96/294 (32%), Positives = 149/294 (50%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++ELV L++P+LF +GIKPP G+L+ GPPG GKTL+A+A+A
Sbjct: 222 VGYDDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN 281
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F+ A+ N P++IFIDEID++A +R+
Sbjct: 282 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKT---- 337
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
N + R ++QLL +DG V+ +AATN FDR++ I
Sbjct: 338 -----NGEVERR--VVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDI 390
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ GR EIL IH +K+ + VDL + A G+ G + +
Sbjct: 391 GIPDPTGRLEILSIHTKNMKLGEDVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDL 450
Query: 262 I-LSSDMDDA--VDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYEN 312
I L D DA +D L V + LG S A EV V + ++ R+E+
Sbjct: 451 IDLDEDTIDAEVLDSLGVTMENFRYALGVSNPS--ALREVAVVEVPNV--RWED 500
Score = 333 (122.3 bits), Expect = 2.4e-27, P = 2.4e-27
Identities = 74/219 (33%), Positives = 111/219 (50%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V++ D+ G++E EL E V+Y + +PE F K G+ P GVL GPPG GKT++AKA+A
Sbjct: 496 VRWEDIGGLEEVKRELIESVQYPVDHPEKFQKFGLSPSRGVLFYGPPGTGKTMLAKAVAN 555
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G + IRD+F +A+ P V+F+DE+D++A R G D
Sbjct: 556 ECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGGSVGDA 615
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQLL E+DG + K V + ATN D + +
Sbjct: 616 ------GGASDR--VVNQLLTEMDGMTSKKNVFVIGATNRPEQLDAALVRPGRLDTLVYV 667
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ R ILK K ++ VD+ A G++G
Sbjct: 668 PLPDQASREGILKAQLRKTPVASDVDIEFIASKTHGFSG 706
>CGD|CAL0006022 [details] [associations]
symbol:RPT6 species:5476 "Candida albicans" [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051091 "positive regulation
of sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0006022
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:AACQ01000103 eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
RefSeq:XP_714440.1 ProteinModelPortal:Q59Y56 STRING:Q59Y56
GeneID:3643877 KEGG:cal:CaO19.3593 Uniprot:Q59Y56
Length = 401
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 78/215 (36%), Positives = 128/215 (59%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+D+ ++E++E++ +K+PELF+ +GI P GV+L GPPG GKTL+A+A+A
Sbjct: 146 VGGLDKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTECK 205
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ + R +G
Sbjct: 206 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGS-------- 257
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
+ E + T+ +LL +LDGF++ K + + ATN DRKI AP
Sbjct: 258 -SGGDSEVQRTMLELLNQLDGFESSKDIKIIMATNRLDILDPALLRPGRIDRKIEFPAPT 316
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
RT+ILKIH+ + ++ ++L A+ + G +G
Sbjct: 317 VAARTDILKIHSRSMNLTRGINLRKIAEKMNGCSG 351
>DICTYBASE|DDB_G0284415 [details] [associations]
symbol:psmC3 "26S proteasome ATPase 3 subunit"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0284415 GO:GO:0005524 GO:GO:0005634
GO:GO:0045335 GenomeReviews:CM000153_GR GO:GO:0030163 GO:GO:0000502
HSSP:Q01853 GO:GO:0017111 EMBL:AAFI02000064 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
RefSeq:XP_638617.1 ProteinModelPortal:Q54PN7 STRING:Q54PN7
PRIDE:Q54PN7 EnsemblProtists:DDB0232967 GeneID:8624588
KEGG:ddi:DDB_G0284415 InParanoid:Q54PN7 OMA:GALMYGP
ProtClustDB:CLSZ2433711 Uniprot:Q54PN7
Length = 421
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 83/263 (31%), Positives = 142/263 (53%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GIKPP GVL+ GPPG GKTL+A+A A +
Sbjct: 166 EYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQ 225
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
+ ++AG + V++ +G G+ +RD F AK P++IFIDE+DA+ T+R F
Sbjct: 226 TNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKR---FDSEV 282
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
+ +E + T+ +LL +LDGF + + +AATN DRKI
Sbjct: 283 -----SGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFP 337
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
PN + R IL+IH+ K+ +S V+ A++ + G +G +
Sbjct: 338 LPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTEL 397
Query: 263 LSSD-MDDAVDRLTVGPKRRGIE 284
+ +D ++ V+ + K++ +E
Sbjct: 398 IHNDFVEGCVE--VMAKKKKTLE 418
>WB|WBGene00004502 [details] [associations]
symbol:rpt-2 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0031625 "ubiquitin protein ligase
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0000003 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER EMBL:FO080494 PIR:T31800
RefSeq:NP_504558.1 ProteinModelPortal:O16368 SMR:O16368
IntAct:O16368 MINT:MINT-210699 STRING:O16368 PaxDb:O16368
PRIDE:O16368 EnsemblMetazoa:F29G9.5.1 EnsemblMetazoa:F29G9.5.2
GeneID:178988 KEGG:cel:CELE_F29G9.5 UCSC:F29G9.5 CTD:178988
WormBase:F29G9.5 GeneTree:ENSGT00550000074818 InParanoid:O16368
NextBio:903424 Uniprot:O16368
Length = 443
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 78/208 (37%), Positives = 124/208 (59%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++DV G+D+ ++E++E V L +PE +++MGI+PP GV+L G PG GKTL+AKA+A +
Sbjct: 187 YADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQT 246
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ N PS++FIDEIDA+ T+R D+
Sbjct: 247 SATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRY----DSN- 301
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V L ATN DRKI
Sbjct: 302 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPL 358
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ K + I +IH S++ + V+L +
Sbjct: 359 PDEKTKRRIFQIHTSRMTLGKEVNLEEF 386
>UNIPROTKB|F1NDQ1 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00819977
Ensembl:ENSGALT00000013163 Uniprot:F1NDQ1
Length = 385
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 130 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 189
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 190 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 245
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 246 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 301
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 302 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 339
>UNIPROTKB|F1P3L9 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242 OMA:GALMYGP
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00601469
Ensembl:ENSGALT00000038503 Uniprot:F1P3L9
Length = 389
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 134 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 193
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 194 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 249
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 250 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 305
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 306 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 343
>UNIPROTKB|F1MG70 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 OMA:DQTTNVK
IPI:IPI00718026 GeneTree:ENSGT00550000074962 EMBL:DAAA02047067
Ensembl:ENSBTAT00000012391 ArrayExpress:F1MG70 Uniprot:F1MG70
Length = 417
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 83/210 (39%), Positives = 121/210 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++D+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 161 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 220
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDEIDA+AT+R F
Sbjct: 221 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR---FDAQ 277
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 278 T-----GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 332
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + + I SK+ +S+ VDL Y
Sbjct: 333 PLPDRRQKRLIFSTITSKMNLSEEVDLEDY 362
>UNIPROTKB|Q3T030 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 EMBL:BC102595 IPI:IPI00718026
RefSeq:NP_001030255.1 UniGene:Bt.48909 ProteinModelPortal:Q3T030
SMR:Q3T030 STRING:Q3T030 PRIDE:Q3T030 GeneID:510029 KEGG:bta:510029
CTD:5704 InParanoid:Q3T030 OrthoDB:EOG4KD6M4 NextBio:20869245
ArrayExpress:Q3T030 Uniprot:Q3T030
Length = 418
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 83/210 (39%), Positives = 121/210 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++D+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDEIDA+AT+R F
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR---FDAQ 278
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 279 T-----GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + + I SK+ +S+ VDL Y
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363
>UNIPROTKB|E2RH48 [details] [associations]
symbol:PSMC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0001824 "blastocyst development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 KO:K03063
OMA:DQTTNVK GeneTree:ENSGT00550000074962 EMBL:AAEX03000950
RefSeq:XP_003638879.1 ProteinModelPortal:E2RH48 SMR:E2RH48
PRIDE:E2RH48 Ensembl:ENSCAFT00000008685 GeneID:100855613
KEGG:cfa:100855613 NextBio:20852115 Uniprot:E2RH48
Length = 418
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 83/210 (39%), Positives = 121/210 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++D+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDEIDA+AT+R F
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR---FDAQ 278
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 279 T-----GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + + I SK+ +S+ VDL Y
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363
>UNIPROTKB|F1PBK7 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:AAEX03011486
Ensembl:ENSCAFT00000013842 Uniprot:F1PBK7
Length = 439
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 184 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 243
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 244 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 299
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 300 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 355
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 356 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 393
>UNIPROTKB|E9PM69 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AC090559 TIGRFAMs:TIGR01242 HGNC:HGNC:9549
ChiTaRS:PSMC3 IPI:IPI00979423 ProteinModelPortal:E9PM69 SMR:E9PM69
PRIDE:E9PM69 Ensembl:ENST00000530912 ArrayExpress:E9PM69
Bgee:E9PM69 Uniprot:E9PM69
Length = 397
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 142 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 201
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 202 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 257
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 258 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 313
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 314 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 351
>UNIPROTKB|P17980 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0001824
"blastocyst development" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=TAS] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0003714
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
EMBL:CH471064 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
GO:GO:0044281 GO:GO:0000082 GO:GO:0003713 GO:GO:0051436
GO:GO:0017111 GO:GO:0000932 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
GO:GO:0001824 Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 OMA:GALMYGP
EMBL:AK313518 EMBL:BC008713 EMBL:BC073165 EMBL:BC106920
EMBL:BC107804 EMBL:AK222485 EMBL:M34079 EMBL:CR456731
IPI:IPI00018398 PIR:A34832 RefSeq:NP_002795.2 UniGene:Hs.250758
ProteinModelPortal:P17980 SMR:P17980 DIP:DIP-27555N IntAct:P17980
MINT:MINT-1149785 STRING:P17980 PhosphoSite:P17980 DMDM:20532406
REPRODUCTION-2DPAGE:IPI00018398 PaxDb:P17980 PeptideAtlas:P17980
PRIDE:P17980 DNASU:5702 Ensembl:ENST00000298852 GeneID:5702
KEGG:hsa:5702 UCSC:uc001nfh.2 CTD:5702 GeneCards:GC11M047440
HGNC:HGNC:9549 HPA:HPA006065 MIM:186852 neXtProt:NX_P17980
PharmGKB:PA33894 InParanoid:P17980 OrthoDB:EOG46143Z
PhylomeDB:P17980 ChiTaRS:PSMC3 GenomeRNAi:5702 NextBio:22154
PMAP-CutDB:P17980 ArrayExpress:P17980 Bgee:P17980 CleanEx:HS_PSMC3
Genevestigator:P17980 GermOnline:ENSG00000165916 Uniprot:P17980
Length = 439
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 184 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 243
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 244 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 299
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 300 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 355
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 356 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 393
>UNIPROTKB|P43686 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001824 "blastocyst development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0016887
"ATPase activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006521 "regulation of cellular amino acid metabolic process"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=TAS]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0016887 GO:GO:0051436
GO:GO:0000216 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
GO:GO:0051437 GO:GO:0006521 GO:GO:0001824 Reactome:REACT_383
EMBL:AC007842 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 EMBL:AF038965 EMBL:U27515 EMBL:AF020736
EMBL:BT007232 EMBL:BC000343 EMBL:BC010396 EMBL:BC014488
IPI:IPI00020042 IPI:IPI00216770 RefSeq:NP_006494.1
RefSeq:NP_694546.1 UniGene:Hs.211594 PDB:2DVW PDBsum:2DVW
ProteinModelPortal:P43686 SMR:P43686 DIP:DIP-29274N IntAct:P43686
MINT:MINT-5004247 STRING:P43686 PhosphoSite:P43686 DMDM:20532409
OGP:P43686 PaxDb:P43686 PRIDE:P43686 DNASU:5704
Ensembl:ENST00000157812 Ensembl:ENST00000455878 GeneID:5704
KEGG:hsa:5704 UCSC:uc002omq.3 UCSC:uc002omr.3 GeneCards:GC19P040477
HGNC:HGNC:9551 HPA:HPA002044 HPA:HPA005471 MIM:602707
neXtProt:NX_P43686 PharmGKB:PA33896 InParanoid:P43686
PhylomeDB:P43686 ChiTaRS:PSMC4 EvolutionaryTrace:P43686
GenomeRNAi:5704 NextBio:22160 ArrayExpress:P43686 Bgee:P43686
CleanEx:HS_PSMC4 Genevestigator:P43686 GermOnline:ENSG00000013275
Uniprot:P43686
Length = 418
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 83/210 (39%), Positives = 121/210 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++D+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDEIDA+AT+R F
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR---FDAQ 278
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 279 T-----GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + + I SK+ +S+ VDL Y
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363
>UNIPROTKB|F1SID4 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:CU856312
Ensembl:ENSSSCT00000014459 Uniprot:F1SID4
Length = 446
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 191 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 250
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 251 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 306
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 307 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 362
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 363 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 400
>UNIPROTKB|Q4R7L3 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9541 "Macaca fascicularis" [GO:0022624 "proteasome
accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:AB168803
ProteinModelPortal:Q4R7L3 SMR:Q4R7L3 PRIDE:Q4R7L3 Uniprot:Q4R7L3
Length = 418
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 83/210 (39%), Positives = 121/210 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++D+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDEIDA+AT+R F
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR---FDAQ 278
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 279 T-----GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + + I SK+ +S+ VDL Y
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363
>MGI|MGI:1098754 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit,
ATPase 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 MGI:MGI:1098754 GO:GO:0005524 GO:GO:0005634
GO:GO:0030163 GO:GO:0017111 GO:GO:0000932
GeneTree:ENSGT00560000077230 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624
CTD:5702 ChiTaRS:PSMC3 EMBL:D49686 EMBL:AB040858 EMBL:AY902337
EMBL:AL691439 EMBL:BC005783 IPI:IPI00133206 RefSeq:NP_032974.2
UniGene:Mm.289832 ProteinModelPortal:O88685 SMR:O88685
IntAct:O88685 STRING:O88685 PhosphoSite:O88685 PaxDb:O88685
PRIDE:O88685 Ensembl:ENSMUST00000067663 GeneID:19182 KEGG:mmu:19182
NextBio:295874 Bgee:O88685 Genevestigator:O88685
GermOnline:ENSMUSG00000002102 Uniprot:O88685
Length = 442
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 187 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 246
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 247 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 302
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 303 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 358
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 359 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 396
>MGI|MGI:1346093 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1346093
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 EMBL:CH466593 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962 EMBL:L76223
EMBL:AB040869 EMBL:AK077507 EMBL:AK153991 EMBL:AK160718
EMBL:AK167041 EMBL:BC012708 IPI:IPI00108895 RefSeq:NP_036004.2
UniGene:Mm.29582 PDB:3AJI PDBsum:3AJI ProteinModelPortal:P54775
SMR:P54775 IntAct:P54775 STRING:P54775 PhosphoSite:P54775
REPRODUCTION-2DPAGE:P54775 PaxDb:P54775 PRIDE:P54775
Ensembl:ENSMUST00000032824 GeneID:23996 KEGG:mmu:23996
InParanoid:Q6ZWN9 EvolutionaryTrace:P54775 NextBio:303909
Bgee:P54775 Genevestigator:P54775 GermOnline:ENSMUSG00000030603
Uniprot:P54775
Length = 418
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 83/210 (39%), Positives = 121/210 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++D+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDEIDA+AT+R F
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR---FDAQ 278
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 279 T-----GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + + I SK+ +S+ VDL Y
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363
>RGD|61905 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit, ATPase
3" species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0001824 "blastocyst development"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA;ISO;ISS]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:61905 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0030163 GO:GO:0017111
GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
KO:K03065 GO:GO:0022624 CTD:5702 EMBL:D83522 EMBL:U77918
IPI:IPI00421528 RefSeq:NP_113783.1 UniGene:Rn.11173
ProteinModelPortal:Q63569 IntAct:Q63569 STRING:Q63569
PhosphoSite:Q63569 PRIDE:Q63569 GeneID:29677 KEGG:rno:29677
UCSC:RGD:61905 NextBio:610019 ArrayExpress:Q63569
Genevestigator:Q63569 GermOnline:ENSRNOG00000011414 Uniprot:Q63569
Length = 439
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 184 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 243
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 244 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 299
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 300 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 355
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 356 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 393
>RGD|621102 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10116 "Rattus norvegicus" [GO:0001824
"blastocyst development" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0022624 "proteasome
accessory complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621102 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 GO:GO:0001824 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK CTD:5704 OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962
EMBL:D50695 EMBL:BC063145 IPI:IPI00210158 RefSeq:NP_476463.1
UniGene:Rn.11341 PDB:2DWZ PDBsum:2DWZ ProteinModelPortal:Q63570
SMR:Q63570 IntAct:Q63570 STRING:Q63570 PhosphoSite:Q63570
PRIDE:Q63570 Ensembl:ENSRNOT00000025819 GeneID:117262
KEGG:rno:117262 UCSC:RGD:621102 InParanoid:Q63570
EvolutionaryTrace:Q63570 NextBio:620144 Genevestigator:Q63570
GermOnline:ENSRNOG00000018994 Uniprot:Q63570
Length = 418
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 83/210 (39%), Positives = 121/210 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++D+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDEIDA+AT+R F
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR---FDAQ 278
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 279 T-----GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + + I SK+ +S+ VDL Y
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363
>UNIPROTKB|Q6P6U2 [details] [associations]
symbol:Psmc3 "26S protease regulatory subunit 6A"
species:10116 "Rattus norvegicus" [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:61905 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:CH473949
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
IPI:IPI00421528 UniGene:Rn.11173 EMBL:BC062019 SMR:Q6P6U2
IntAct:Q6P6U2 STRING:Q6P6U2 Ensembl:ENSRNOT00000015757
Genevestigator:Q6P6U2 Uniprot:Q6P6U2
Length = 442
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 187 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 246
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 247 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 302
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 303 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 358
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 359 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 396
>TAIR|locus:2161258 [details] [associations]
symbol:RPT3 "regulatory particle triple-A ATPase 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IGI;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0006888
"ER to Golgi vesicle-mediated transport" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009735 "response to cytokinin
stimulus" evidence=RCA] [GO:0009853 "photorespiration"
evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
GO:GO:0016020 EMBL:AB019228 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:AF123392 EMBL:AY070466 EMBL:BT020373
IPI:IPI00537564 RefSeq:NP_200637.1 UniGene:At.45955
ProteinModelPortal:Q9SEI4 SMR:Q9SEI4 IntAct:Q9SEI4 STRING:Q9SEI4
PaxDb:Q9SEI4 PRIDE:Q9SEI4 EnsemblPlants:AT5G58290.1 GeneID:835941
KEGG:ath:AT5G58290 GeneFarm:1500 TAIR:At5g58290 InParanoid:Q9SEI4
KO:K03063 OMA:DQTTNVK ProtClustDB:CLSN2686094 Genevestigator:Q9SEI4
GermOnline:AT5G58290 Uniprot:Q9SEI4
Length = 408
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 84/220 (38%), Positives = 124/220 (56%)
Query: 14 AMFSQGST-GVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCG 71
++ SQ V ++D+ G D +E++E V L + EL+ ++GI PP GVLL GPPG G
Sbjct: 142 SLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTG 201
Query: 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131
KT++AKA+A F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDE+DA+A
Sbjct: 202 KTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIA 261
Query: 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXX 191
T R F T A +E + L +LL ++DGFD V + ATN
Sbjct: 262 TAR---FDAQT-----GADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR 313
Query: 192 XXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
DRKI P+ + + + ++ SK+ +SD VDL Y
Sbjct: 314 PGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDY 353
>ZFIN|ZDB-GENE-030131-5083 [details] [associations]
symbol:psmc4 "proteasome (prosome, macropain) 26S
subunit, ATPase, 4" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005937
Pfam:PF00004 SMART:SM00382 ZFIN:ZDB-GENE-030131-5083 GO:GO:0005524
GO:GO:0005737 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 EMBL:BC055215 IPI:IPI00509630
UniGene:Dr.76514 ProteinModelPortal:Q7SXX0 SMR:Q7SXX0 STRING:Q7SXX0
PRIDE:Q7SXX0 InParanoid:Q7SXX0 ArrayExpress:Q7SXX0 Bgee:Q7SXX0
Uniprot:Q7SXX0
Length = 418
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 83/210 (39%), Positives = 121/210 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SD+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 162 VLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDEIDA+AT+R F
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR---FDAQ 278
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 279 T-----GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLCPGRLDRKIEF 333
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + + + SK+ +S+ VDL Y
Sbjct: 334 PLPDRRQKRLVFSTITSKMNLSEEVDLEDY 363
>ZFIN|ZDB-GENE-030131-5408 [details] [associations]
symbol:vcp "valosin containing protein"
species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA;ISS] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0035861 "site of double-strand
break" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:2000058 "regulation of protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359
ZFIN:ZDB-GENE-030131-5408 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0006810 EMBL:CR318632 GO:GO:0016567 GO:GO:0007049
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:AYRPIHK GeneTree:ENSGT00700000104534
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:AB093594 EMBL:AY576993 EMBL:BC050488 EMBL:BC067384
IPI:IPI00505091 RefSeq:NP_958889.1 UniGene:Dr.75122
ProteinModelPortal:Q7ZU99 SMR:Q7ZU99 STRING:Q7ZU99 PRIDE:Q7ZU99
Ensembl:ENSDART00000023779 GeneID:327197 KEGG:dre:327197
InParanoid:Q76KA4 NextBio:20809924 Bgee:Q7ZU99 Uniprot:Q7ZU99
Length = 806
Score = 377 (137.8 bits), Expect = 7.3e-34, P = 7.3e-34
Identities = 82/219 (37%), Positives = 124/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+ + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EIL+IH +K++D VDL A G G
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 353 (129.3 bits), Expect = 8.5e-30, P = 8.5e-30
Identities = 81/219 (36%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
+ + D+ G+D+ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 ITWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG + K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K +S VDL AK G++G
Sbjct: 646 PLPDEKSRIAILKANLRKSPISKDVDLDFLAKMTNGFSG 684
>WB|WBGene00008053 [details] [associations]
symbol:cdc-48.2 species:6239 "Caenorhabditis elegans"
[GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=IMP] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IGI] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
Length = 810
Score = 377 (137.8 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 92/281 (32%), Positives = 142/281 (50%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+ + + +++E+V L++P+LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 206 VGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVAN 265
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F + N P+++FIDEIDA+A +R+
Sbjct: 266 ETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKRE------ 319
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
A + + ++QLL +DG T V+ +AATN FDR+I I
Sbjct: 320 -----KAHGEVEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREIDI 374
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+A GR EIL+IH +K+ + VDL A G+ G + E
Sbjct: 375 GIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAAIQQIREKMEL 434
Query: 262 I-LSSDMDDA--VDRLTVGPKRRGIELGNQGQS--RRAATE 297
I L D DA ++ L V + +G S R A E
Sbjct: 435 IDLEDDTIDAEVLNSLAVTMENFRFAMGKSSPSALREAVVE 475
Score = 355 (130.0 bits), Expect = 4.7e-30, P = 4.7e-30
Identities = 81/217 (37%), Positives = 117/217 (53%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G+ ELQELV+Y +++PE + K G++P GVL GPPGCGKTL+AKAIA E
Sbjct: 481 WSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 540
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F + G E + + G A +RD+F +A+ P V+F DE+D++A R G D
Sbjct: 541 QANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAG- 599
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
AA + +NQ+L E+DG + K V + ATN D+ I I
Sbjct: 600 ---GAA----DRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPL 652
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ R +I K K +S +DL+ AKN G++G
Sbjct: 653 PDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSG 689
>UNIPROTKB|P54812 [details] [associations]
symbol:cdc-48.2 "Transitional endoplasmic reticulum ATPase
homolog 2" species:6239 "Caenorhabditis elegans" [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
Length = 810
Score = 377 (137.8 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 92/281 (32%), Positives = 142/281 (50%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+ + + +++E+V L++P+LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 206 VGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVAN 265
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F + N P+++FIDEIDA+A +R+
Sbjct: 266 ETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKRE------ 319
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
A + + ++QLL +DG T V+ +AATN FDR+I I
Sbjct: 320 -----KAHGEVEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREIDI 374
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+A GR EIL+IH +K+ + VDL A G+ G + E
Sbjct: 375 GIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAAIQQIREKMEL 434
Query: 262 I-LSSDMDDA--VDRLTVGPKRRGIELGNQGQS--RRAATE 297
I L D DA ++ L V + +G S R A E
Sbjct: 435 IDLEDDTIDAEVLNSLAVTMENFRFAMGKSSPSALREAVVE 475
Score = 355 (130.0 bits), Expect = 4.7e-30, P = 4.7e-30
Identities = 81/217 (37%), Positives = 117/217 (53%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G+ ELQELV+Y +++PE + K G++P GVL GPPGCGKTL+AKAIA E
Sbjct: 481 WSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 540
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F + G E + + G A +RD+F +A+ P V+F DE+D++A R G D
Sbjct: 541 QANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAG- 599
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
AA + +NQ+L E+DG + K V + ATN D+ I I
Sbjct: 600 ---GAA----DRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPL 652
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ R +I K K +S +DL+ AKN G++G
Sbjct: 653 PDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSG 689
>FB|FBgn0037742 [details] [associations]
symbol:Rpt3R "Regulatory particle triple-A ATPase 3-related"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=NAS]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 EMBL:AE014297 GO:GO:0005524
GO:GO:0005737 GO:GO:0006200 GO:GO:0006974 GO:GO:0016887
GO:GO:0030163 TIGRFAMs:TIGR01242 KO:K03063
GeneTree:ENSGT00550000074962 FlyBase:FBgn0037742 EMBL:BT016035
RefSeq:NP_649938.2 UniGene:Dm.21651 SMR:Q9VH79 STRING:Q9VH79
EnsemblMetazoa:FBtr0301536 EnsemblMetazoa:FBtr0332172 GeneID:41190
KEGG:dme:Dmel_CG9475 UCSC:CG9475-RA CTD:41190 InParanoid:Q9VH79
OMA:KQSNCLV OrthoDB:EOG49GHZ0 GenomeRNAi:41190 NextBio:822637
Uniprot:Q9VH79
Length = 405
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 81/207 (39%), Positives = 120/207 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
+ +SD+ G+D +E++E V L + +L+ ++GI PP GVLL GPPGCGKT++AKA+A
Sbjct: 149 ISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGVLLFGPPGCGKTMLAKAVAH 208
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RDLF+ AK N PS+IFIDEIDA+AT+R F
Sbjct: 209 HTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSIIFIDEIDAIATKR---FDAQ 265
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD + + ATN DRKI +
Sbjct: 266 T-----GADREVQRILLELLNQMDGFDETTNIKVIMATNRADTLDPALLRPGRLDRKIEL 320
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDL 228
P+ + + + SK+ + + VDL
Sbjct: 321 PLPDRRQKRLVFTTITSKMNVGEDVDL 347
>FB|FBgn0028685 [details] [associations]
symbol:Rpt4 "Regulatory particle triple-A ATPase 4"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
"proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
activity" evidence=IDA] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:1901838 "positive regulation of transcription of nuclear large
rRNA transcript from RNA polymerase I promoter" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001163 "RNA polymerase I
regulatory region sequence-specific DNA binding" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0005875 GO:GO:0022008
GO:GO:0006508 GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 HSSP:Q01853
TIGRFAMs:TIGR01242 GO:GO:0008540 EMBL:AY071182
ProteinModelPortal:Q8SZ19 SMR:Q8SZ19 IntAct:Q8SZ19 STRING:Q8SZ19
PRIDE:Q8SZ19 FlyBase:FBgn0028685 InParanoid:Q8SZ19
OrthoDB:EOG43TX9X ChiTaRS:Rpt4 ArrayExpress:Q8SZ19 Bgee:Q8SZ19
Uniprot:Q8SZ19
Length = 397
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 88/258 (34%), Positives = 134/258 (51%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +S + G+ + + EL+E++ L NPELF ++GI PP G LL GPPG GKTL+A+A+A
Sbjct: 138 VTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVAS 197
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
+ F ++ S V+ +G + IR++F A+ ++P +IF+DEIDA+ RR F +
Sbjct: 198 QLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRR---FSEG 254
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T +A +E + TL +LL ++DGFD+ V + ATN DRKI I
Sbjct: 255 T-----SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDSLDPALLRPGRLDRKIEI 309
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
PN + R EILKIHA K+ +D + K + G E
Sbjct: 310 PLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREY 369
Query: 262 ILSSDMDDAVDRLTVGPK 279
++ D AV +++ K
Sbjct: 370 VIQGDFMKAVRKVSDNKK 387
>UNIPROTKB|O42587 [details] [associations]
symbol:psmc3-a "26S protease regulatory subunit 6A-A"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 CTD:4913 TIGRFAMs:TIGR01242 EMBL:Y10461
RefSeq:NP_001080249.1 UniGene:Xl.12803 ProteinModelPortal:O42587
PRIDE:O42587 GeneID:379941 KEGG:xla:379941 Xenbase:XB-GENE-962533
HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 Uniprot:O42587
Length = 405
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 80/211 (37%), Positives = 124/211 (58%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 168 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 227
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 228 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 283
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 284 ----KAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFP 339
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAK 233
PN + R I++IH+ K+ +S V+ A+
Sbjct: 340 MPNEEARARIMQIHSRKMNVSPDVNYEELAR 370
>TAIR|locus:2119926 [details] [associations]
symbol:RPT2a "regulatory particle AAA-ATPase 2A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0009933 "meristem structural organization" evidence=IMP]
[GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0010015 "root
morphogenesis" evidence=IMP] [GO:0010078 "maintenance of root
meristem identity" evidence=IMP] [GO:0010311 "lateral root
formation" evidence=IMP] [GO:0035266 "meristem growth"
evidence=IMP] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048827 "phyllome development" evidence=IMP] [GO:0048829 "root
cap development" evidence=IMP] [GO:0046686 "response to cadmium
ion" evidence=IEP;RCA] [GO:0016020 "membrane" evidence=IDA]
[GO:0009408 "response to heat" evidence=IMP] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=RCA;IMP] [GO:0043248 "proteasome assembly"
evidence=RCA;IMP] [GO:0048364 "root development" evidence=IMP]
[GO:0051788 "response to misfolded protein" evidence=RCA;IMP]
[GO:0080129 "proteasome core complex assembly" evidence=RCA;IMP]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0007292 "female gamete generation"
evidence=IGI] [GO:0048232 "male gamete generation" evidence=IGI]
[GO:0090351 "seedling development" evidence=IMP] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0009853
"photorespiration" evidence=RCA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0051510 "regulation of
unidimensional cell growth" evidence=RCA] [GO:0060968 "regulation
of gene silencing" evidence=IMP] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046686 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0043161 GO:GO:0016020 EMBL:AL078470
EMBL:AL161574 GO:GO:0009408 GO:GO:0010311 GO:GO:0048829
GO:GO:0000502 GO:GO:0043248 GO:GO:0017111 GO:GO:0009965
GO:GO:0009933 EMBL:AL078469 GO:GO:0007292 GO:GO:0060968
GO:GO:0010078 HSSP:P43773 GO:GO:0051788 GO:GO:0090351 GO:GO:0048232
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123391 EMBL:AB161192 EMBL:AY034975 IPI:IPI00538666
PIR:T08959 RefSeq:NP_194633.1 UniGene:At.24596
ProteinModelPortal:Q9SZD4 SMR:Q9SZD4 IntAct:Q9SZD4 STRING:Q9SZD4
PaxDb:Q9SZD4 PRIDE:Q9SZD4 EnsemblPlants:AT4G29040.1 GeneID:829025
KEGG:ath:AT4G29040 GeneFarm:1494 TAIR:At4g29040 InParanoid:Q9SZD4
KO:K03062 OMA:SAIVMEA PhylomeDB:Q9SZD4 ProtClustDB:CLSN2683303
GO:GO:0035266 Uniprot:Q9SZD4
Length = 443
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 84/263 (31%), Positives = 137/263 (52%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G++ ++E++E V L +PEL++ +GIKPP GV+L G PG GKTL+AKA+A
Sbjct: 187 YADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 246
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A PS++FIDEIDA+ T+R D
Sbjct: 247 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY----DA-- 300
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
++ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 301 --HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 358
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
P+ K R I +IH SK+ +S+ V+L + ++G + +
Sbjct: 359 PDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 418
Query: 264 SSDMDDAVDRLTVGPKRRGIELG 286
D A +++ K+ G+ G
Sbjct: 419 HPDFKKAKEKVMF-KKKEGVPEG 440
>CGD|CAL0002261 [details] [associations]
symbol:RPT5 species:5476 "Candida albicans" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0002261 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000086 EMBL:AACQ01000085 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 RefSeq:XP_715432.1 RefSeq:XP_715502.1
ProteinModelPortal:Q5A0X3 STRING:Q5A0X3 GeneID:3642858
GeneID:3642911 KEGG:cal:CaO19.10635 KEGG:cal:CaO19.3123
Uniprot:Q5A0X3
Length = 454
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 86/252 (34%), Positives = 134/252 (53%)
Query: 25 FSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G+D+ +EEL E +V +K + F +GIKPP G L+ GPPG GKTL+A+A A ++
Sbjct: 199 YSDIGGLDKQIEELIEAVVLPMKQADKFKNLGIKPPKGALMYGPPGTGKTLLARACAAQS 258
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
G F ++A + V++ +G G+ +RD F AK P++IFIDE+DA+ T+R F +D
Sbjct: 259 GATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR---FD--SD 313
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGF + V LAATN DRKI
Sbjct: 314 ---KSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTLDPALLRSGRLDRKIEFPL 370
Query: 204 PNAKGRTEILKIHASKVKM-SDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESI 262
P+ + R +LKIHA K+ ++SV+ A++ + G G I
Sbjct: 371 PSEEARESVLKIHARKLHCDNNSVNWRELARSTDEFNGAQLKAVTVEAGMIALRNGKSII 430
Query: 263 LSSDMDDAVDRL 274
D +A+ +
Sbjct: 431 KHEDFVEAISEV 442
>GENEDB_PFALCIPARUM|PF13_0063 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory
subunit 7, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511
GO:GO:0017111 EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0005838 KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177
RefSeq:XP_001349843.2 ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3
MINT:MINT-1698409 PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA
GeneID:814041 KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500
Uniprot:Q8IEK3
Length = 420
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 90/259 (34%), Positives = 132/259 (50%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
+ ++D+ G E +E+L+E+V L PE F +GI PP GVLL GPPG GKTL A+AIA
Sbjct: 159 ITYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIAN 218
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F + GSE V+ VG G+ +R+LF+ AK K ++FIDE+DA+ R G D
Sbjct: 219 RTDACFICVIGSELVQKYVGEGARMVRELFQMAKSKKACILFIDEVDAIGGSR-G---DE 274
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+ H E + T+ +++ +LDGFD + L ATN DR+I
Sbjct: 275 SAH----GDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTLDSALVRPGRIDRRIEF 330
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ +GRT I KIHA+ + MS V A+ P TG ++
Sbjct: 331 SLPDLEGRTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKT 390
Query: 262 ILSSDMDDAVDRLTVGPKR 280
I D+ A++++ G K+
Sbjct: 391 ITEKDLLLAINKVIHGCKQ 409
>UNIPROTKB|Q8IEK3 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory subunit 7,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 GO:GO:0017111
EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0005838
KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177 RefSeq:XP_001349843.2
ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3 MINT:MINT-1698409
PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA GeneID:814041
KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500 Uniprot:Q8IEK3
Length = 420
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 90/259 (34%), Positives = 132/259 (50%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
+ ++D+ G E +E+L+E+V L PE F +GI PP GVLL GPPG GKTL A+AIA
Sbjct: 159 ITYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIAN 218
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F + GSE V+ VG G+ +R+LF+ AK K ++FIDE+DA+ R G D
Sbjct: 219 RTDACFICVIGSELVQKYVGEGARMVRELFQMAKSKKACILFIDEVDAIGGSR-G---DE 274
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+ H E + T+ +++ +LDGFD + L ATN DR+I
Sbjct: 275 SAH----GDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTLDSALVRPGRIDRRIEF 330
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ +GRT I KIHA+ + MS V A+ P TG ++
Sbjct: 331 SLPDLEGRTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKT 390
Query: 262 ILSSDMDDAVDRLTVGPKR 280
I D+ A++++ G K+
Sbjct: 391 ITEKDLLLAINKVIHGCKQ 409
>FB|FBgn0261014 [details] [associations]
symbol:TER94 "TER94" species:7227 "Drosophila melanogaster"
[GO:0045169 "fusome" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0005783 "endoplasmic reticulum" evidence=NAS] [GO:0007030
"Golgi organization" evidence=IMP] [GO:0007317 "regulation of pole
plasm oskar mRNA localization" evidence=IMP] [GO:0016320
"endoplasmic reticulum membrane fusion" evidence=ISS] [GO:0000226
"microtubule cytoskeleton organization" evidence=IMP] [GO:0007029
"endoplasmic reticulum organization" evidence=IMP] [GO:0045451
"pole plasm oskar mRNA localization" evidence=IMP] [GO:0008103
"oocyte microtubule cytoskeleton polarization" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0042052
"rhabdomere development" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0000502 "proteasome complex" evidence=NAS]
[GO:0006508 "proteolysis" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0030433 "ER-associated protein catabolic
process" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=IGI] [GO:0048813 "dendrite morphogenesis" evidence=IMP]
[GO:0043523 "regulation of neuron apoptotic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 EMBL:AE013599 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0000226
GO:GO:0030154 GO:GO:0005811 GO:GO:0006810 GO:GO:0006200
GO:GO:0048477 GO:GO:0030433 GO:GO:0000502 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 GO:GO:0007030
GO:GO:0007029 GO:GO:0016320 GO:GO:0045169 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
GeneTree:ENSGT00700000104534 GO:GO:0007317 EMBL:AF047037
EMBL:AF202034 EMBL:AF132553 RefSeq:NP_001097249.1
RefSeq:NP_001097250.1 RefSeq:NP_477369.1 UniGene:Dm.2968
ProteinModelPortal:Q7KN62 SMR:Q7KN62 IntAct:Q7KN62 STRING:Q7KN62
PaxDb:Q7KN62 PRIDE:Q7KN62 EnsemblMetazoa:FBtr0088391 GeneID:36040
KEGG:dme:Dmel_CG2331 UCSC:CG2331-RA CTD:36040 FlyBase:FBgn0261014
InParanoid:Q7KN62 OMA:RRGTDVN OrthoDB:EOG4TX96S GenomeRNAi:36040
NextBio:796507 Bgee:Q7KN62 Uniprot:Q7KN62
Length = 801
Score = 375 (137.1 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 84/219 (38%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+L+ GPPG GKTL+A+A+A
Sbjct: 198 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 257
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDEIDA+A +R D
Sbjct: 258 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKR-----DK 312
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T H ER ++QLL +DG +I +AATN FDR+I I
Sbjct: 313 T-H----GEVERRI-VSQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDI 366
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR E+L+IH +K+ D VDL A G G
Sbjct: 367 GIPDATGRLEVLRIHTKNMKLHDDVDLEQIAAESHGHVG 405
Score = 351 (128.6 bits), Expect = 1.5e-29, P = 1.5e-29
Identities = 81/217 (37%), Positives = 119/217 (54%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G++ +ELQELV+Y +++P+ F K G++P GVL GPPGCGKTL+AKAIA E
Sbjct: 473 WTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 532
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F + G E + + G A +RD+F +A+ P V+F DE+D++A R G D
Sbjct: 533 QANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAG- 591
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
AA + +NQ+L E+DG K V + ATN D+ I I
Sbjct: 592 ---GAA----DRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 644
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VDL+ AK G++G
Sbjct: 645 PDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSG 681
>ASPGD|ASPL0000049719 [details] [associations]
symbol:AN2213 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0043171 "peptide catabolic process"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001307
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER
OrthoDB:EOG4FN7S6 EMBL:AACD01000035 RefSeq:XP_659817.1
ProteinModelPortal:Q5BB67 STRING:Q5BB67
EnsemblFungi:CADANIAT00008897 GeneID:2875757 KEGG:ani:AN2213.2
Uniprot:Q5BB67
Length = 460
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 77/208 (37%), Positives = 122/208 (58%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G++ ++E++E V L +PEL+++MGIKPP GV+L G PG GKTL+AKA+A +
Sbjct: 203 YADIGGLESQIQEVRESVELPLLHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 262
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R +F+ A + PS++FIDEIDA+ T+R D+T
Sbjct: 263 SATFLRIVGSELIQKYLGDGPRLVRQIFQVAAEHAPSIVFIDEIDAIGTKRY----DST- 317
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD V + ATN DRKI
Sbjct: 318 ---SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFEN 374
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + +I +H SK+ + D VDL +
Sbjct: 375 PDQNTKKKIFTLHTSKMSLGDDVDLDEF 402
>ASPGD|ASPL0000064945 [details] [associations]
symbol:AN6988 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001304 GO:GO:0030163 GO:GO:0017111
EMBL:AACD01000117 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM OrthoDB:EOG44N21J
RefSeq:XP_664592.1 ProteinModelPortal:Q5AXJ2 STRING:Q5AXJ2
EnsemblFungi:CADANIAT00000491 GeneID:2869968 KEGG:ani:AN6988.2
Uniprot:Q5AXJ2
Length = 389
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 76/214 (35%), Positives = 128/214 (59%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
+ G+D+ ++E++E++ LK+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 134 IGGLDQQIKEIKEVIELGLKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCR 193
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLY 146
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ + R D+
Sbjct: 194 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI----DSA---- 245
Query: 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNA 206
+ E + T+ +LL +LDGF+ K + + ATN DRKI P+
Sbjct: 246 GSGDSEVQRTMLELLNQLDGFEPTKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSV 305
Query: 207 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R +IL+IH+ + ++ ++L+ A+ + G +G
Sbjct: 306 EARADILRIHSRSMNLTRGINLTKIAEKMNGCSG 339
>CGD|CAL0005257 [details] [associations]
symbol:RPT2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0045732 "positive regulation
of protein catabolic process" evidence=IEA] [GO:0043171 "peptide
catabolic process" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 CGD:CAL0005257 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000051 EMBL:AACQ01000050
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03062 RefSeq:XP_717718.1
RefSeq:XP_717812.1 ProteinModelPortal:Q5A7M6 STRING:Q5A7M6
GeneID:3640525 GeneID:3640683 KEGG:cal:CaO19.12895
KEGG:cal:CaO19.5440 Uniprot:Q5A7M6
Length = 465
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 82/261 (31%), Positives = 135/261 (51%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G++ ++E++E V L +PEL+++MGIKPP GV+L G PG GKTL+AKA+A +
Sbjct: 185 YADIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 244
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G R +F+ A + PS++FIDEIDA+ T+R ++ T+
Sbjct: 245 SATFLRIVGSELIQKYLGDGPRLCRQIFQIAADHAPSIVFIDEIDAIGTKR---YESTS- 300
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+E + T+ +LL +LDGFD + + ATN DRKI
Sbjct: 301 ----GGEREIQRTMLELLNQLDGFDDRGDIKVIMATNKIESLDPALIRPGRIDRKILFEN 356
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
P+A + +IL IH SK+ ++D V+L +G + +
Sbjct: 357 PDANTKKKILTIHTSKMSLADDVNLDEIVTGKDDLSGADIKAICTEAGLLALRERRMQVK 416
Query: 264 SSDMDDAVDRLTVGPKRRGIE 284
+ D A +R+ +E
Sbjct: 417 AEDFKSAKERVLKNKVEENLE 437
>DICTYBASE|DDB_G0270784 [details] [associations]
symbol:psmC1 "TAT binding protein alpha"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030587 "sorocarp development"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0270784 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
GO:GO:0030587 GO:GO:0000910 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 HSSP:Q9WZ49 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03062 OMA:FIRNQER RefSeq:XP_646726.1 ProteinModelPortal:Q55BV5
STRING:Q55BV5 PRIDE:Q55BV5 EnsemblProtists:DDB0232964
GeneID:8617698 KEGG:ddi:DDB_G0270784 ProtClustDB:PTZ00361
Uniprot:Q55BV5
Length = 439
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 78/217 (35%), Positives = 127/217 (58%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G++ V+E++E + L +PEL++++GIKPP GV+L G PG GKTL+AKA+A +
Sbjct: 183 YSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQT 242
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A PS++FIDEIDA+ T+R D+
Sbjct: 243 SATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRY----DSQ- 297
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD V + ATN DRKI
Sbjct: 298 ---SGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 354
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K + +I +IH +K+ +S+ V+L + + +G
Sbjct: 355 PDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSG 391
>FB|FBgn0028686 [details] [associations]
symbol:Rpt3 "Regulatory particle triple-A ATPase 3"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
"endopeptidase activity" evidence=IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0005838 "proteasome regulatory particle"
evidence=ISS;IDA] [GO:0001673 "male germ cell nucleus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PRINTS:PR00300 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:AE014298 GO:GO:0006508
GO:GO:0006974 GO:GO:0016887 GO:GO:0004175 GO:GO:0001673
GO:GO:0030163 HSSP:Q01853 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0008540 BRENDA:3.4.25.1 KO:K03063 OMA:DQTTNVK
GeneTree:ENSGT00550000074962 EMBL:AF145306 EMBL:BT046144
EMBL:FN544098 EMBL:FN544099 EMBL:FN544100 EMBL:FN544101
EMBL:FN544102 EMBL:FN544103 EMBL:FN544104 EMBL:FN544105
EMBL:FN544106 EMBL:FN544108 RefSeq:NP_572686.1 UniGene:Dm.8238
SMR:Q9V405 STRING:Q9V405 EnsemblMetazoa:FBtr0073436 GeneID:32047
KEGG:dme:Dmel_CG16916 UCSC:CG16916-RA CTD:32047 FlyBase:FBgn0028686
InParanoid:Q9V405 OrthoDB:EOG4P5HRH GenomeRNAi:32047 NextBio:776548
Uniprot:Q9V405
Length = 413
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 81/210 (38%), Positives = 121/210 (57%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++D+ G+D +E++E V L + EL+ ++GI PP GVL+ GPPGCGKT++AKA+A
Sbjct: 157 VSYADIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 216
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ AK N P++IFIDEIDA+AT+R F
Sbjct: 217 HTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR---FDAQ 273
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 274 T-----GADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 328
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSY 231
P+ + + + SK+ +S+ VDL +
Sbjct: 329 PLPDRRQKRLVFSTITSKMNLSEDVDLEEF 358
>GENEDB_PFALCIPARUM|PFL2345c [details] [associations]
symbol:PFL2345c "tat-binding protein homolog"
species:5833 "Plasmodium falciparum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014188
GO:GO:0006511 HSSP:Q01853 GO:GO:0017111 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM ProtClustDB:CLSZ2429412
RefSeq:XP_001350873.1 ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5
MINT:MINT-1544609 PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA
GeneID:811521 KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900
Uniprot:Q8I4U5
Length = 435
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 78/215 (36%), Positives = 128/215 (59%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+D+ V+E++E++ +K+PE+F+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 181 VGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTDCT 240
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ ++R +G +H
Sbjct: 241 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEG------EH- 293
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
E + T+ +LL +LDGF++ + + + TN DRKI PN
Sbjct: 294 ---GDSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILDEALLRPGRIDRKIEFPNPN 350
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R EILKIH+ K+ + +D+ A ++ +G
Sbjct: 351 VEARMEILKIHSRKMNLMRGIDMLKIATDMNNCSG 385
>GENEDB_PFALCIPARUM|PF13_0033 [details] [associations]
symbol:PF13_0033 "26S proteasome regulatory
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853
GO:GO:0017111 EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 OMA:EHKEVES ProtClustDB:CLSZ2429012
GO:GO:0005838 RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1
PRIDE:Q8IEQ1 EnsemblProtists:PF13_0033:mRNA GeneID:814012
KEGG:pfa:PF13_0033 EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
Length = 393
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 90/268 (33%), Positives = 136/268 (50%)
Query: 17 SQGSTG-VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
S+ ST V ++ + G+ E + +++E+V + NP L+ ++GIK P GVLL GPPG GKTL
Sbjct: 127 SENSTNKVNYNQIGGLSEQIRQMREVVELPILNPYLYKRVGIKTPKGVLLYGPPGTGKTL 186
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+A+A+A F ++ S V+ +G + IR++F AK ++P +IF+DEIDA+ RR
Sbjct: 187 LARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEHQPCIIFMDEIDAIGGRR 246
Query: 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXX 194
F T +A +E + TL +LL LDGF+ V + ATN
Sbjct: 247 ---FSQGT-----SADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALVRPGR 298
Query: 195 FDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXX 254
DRKI I PN R EILKIHA+K+ +D S + G+ G
Sbjct: 299 LDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFA 358
Query: 255 XXKGHESILSSDMDDAVDRLTVGPKRRG 282
+ ++ D A +++ G K G
Sbjct: 359 IRAMRDYVIEEDFYKAARKISEGKKLEG 386
>UNIPROTKB|Q8I4U5 [details] [associations]
symbol:PFL2345c "Tat-binding protein homolog" species:36329
"Plasmodium falciparum 3D7" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:AE014188 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
ProtClustDB:CLSZ2429412 RefSeq:XP_001350873.1
ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5 MINT:MINT-1544609
PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA GeneID:811521
KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900 Uniprot:Q8I4U5
Length = 435
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 78/215 (36%), Positives = 128/215 (59%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+D+ V+E++E++ +K+PE+F+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 181 VGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTDCT 240
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR-QGIFKDTTDHL 145
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ ++R +G +H
Sbjct: 241 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEG------EH- 293
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
E + T+ +LL +LDGF++ + + + TN DRKI PN
Sbjct: 294 ---GDSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILDEALLRPGRIDRKIEFPNPN 350
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
+ R EILKIH+ K+ + +D+ A ++ +G
Sbjct: 351 VEARMEILKIHSRKMNLMRGIDMLKIATDMNNCSG 385
>UNIPROTKB|Q8IEQ1 [details] [associations]
symbol:PF13_0033 "26S proteasome regulatory subunit,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
OMA:EHKEVES ProtClustDB:CLSZ2429012 GO:GO:0005838
RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1 PRIDE:Q8IEQ1
EnsemblProtists:PF13_0033:mRNA GeneID:814012 KEGG:pfa:PF13_0033
EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
Length = 393
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 90/268 (33%), Positives = 136/268 (50%)
Query: 17 SQGSTG-VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTL 74
S+ ST V ++ + G+ E + +++E+V + NP L+ ++GIK P GVLL GPPG GKTL
Sbjct: 127 SENSTNKVNYNQIGGLSEQIRQMREVVELPILNPYLYKRVGIKTPKGVLLYGPPGTGKTL 186
Query: 75 VAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134
+A+A+A F ++ S V+ +G + IR++F AK ++P +IF+DEIDA+ RR
Sbjct: 187 LARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEHQPCIIFMDEIDAIGGRR 246
Query: 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXX 194
F T +A +E + TL +LL LDGF+ V + ATN
Sbjct: 247 ---FSQGT-----SADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALVRPGR 298
Query: 195 FDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXX 254
DRKI I PN R EILKIHA+K+ +D S + G+ G
Sbjct: 299 LDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFA 358
Query: 255 XXKGHESILSSDMDDAVDRLTVGPKRRG 282
+ ++ D A +++ G K G
Sbjct: 359 IRAMRDYVIEEDFYKAARKISEGKKLEG 386
>ZFIN|ZDB-GENE-030131-8730 [details] [associations]
symbol:psmc1a "proteasome (prosome, macropain) 26S
subunit, ATPase, 1a" species:7955 "Danio rerio" [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-8730 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 HSSP:P43773
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03062 EMBL:BC049471
IPI:IPI00500900 RefSeq:NP_956327.1 UniGene:Dr.76288
ProteinModelPortal:Q7ZWD1 STRING:Q7ZWD1 GeneID:336786
KEGG:dre:336786 CTD:336786 InParanoid:Q7ZWD1 NextBio:20811903
ArrayExpress:Q7ZWD1 Uniprot:Q7ZWD1
Length = 440
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 77/205 (37%), Positives = 123/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L G PG GKTL+AKA+A +
Sbjct: 184 YADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 243
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 298
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 299 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ ++D V L
Sbjct: 356 PDEKTKRRIFQIHTSRMTVADDVTL 380
>DICTYBASE|DDB_G0289003 [details] [associations]
symbol:psmC4 "HIV TAT binding-protein-related"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0006972 "hyperosmotic response"
evidence=IEP] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=ISS] [GO:0005838 "proteasome regulatory
particle" evidence=ISS] [GO:0004175 "endopeptidase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0289003 GO:GO:0005524 GO:GO:0005634
GO:GO:0045335 GO:GO:0006508 GenomeReviews:CM000154_GR GO:GO:0006972
GO:GO:0004175 EMBL:AAFI02000129 GO:GO:0030163 GO:GO:0017111
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03063 OMA:DQTTNVK EMBL:L16578
PIR:JN0611 RefSeq:XP_636422.1 ProteinModelPortal:P34123 SMR:P34123
STRING:P34123 PRIDE:P34123 EnsemblProtists:DDB0191435
GeneID:8626913 KEGG:ddi:DDB_G0289003 ProtClustDB:PTZ00454
GO:GO:0005838 Uniprot:P34123
Length = 403
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 87/245 (35%), Positives = 126/245 (51%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G D +E++E V L + L+ ++GI PP GVLL GPPG GKT++AKA+A
Sbjct: 149 YSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 208
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSEFV+ +G G +RD+F+ A+ N P++IFIDEIDA+AT+R F T
Sbjct: 209 SAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKR---FDAQT- 264
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
A +E + L +LL ++DGFD V + ATN DRKI
Sbjct: 265 ----GADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPL 320
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
P+ + + I ++ SK+ +SD VDL Y +G K IL
Sbjct: 321 PDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVIL 380
Query: 264 SSDMD 268
D +
Sbjct: 381 PKDFE 385
>UNIPROTKB|J9NWA6 [details] [associations]
symbol:LOC100687152 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
EMBL:AAEX03026457 Ensembl:ENSCAFT00000026372 OMA:REAVEQP
Uniprot:J9NWA6
Length = 434
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 80/218 (36%), Positives = 126/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 179 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 238
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA T+R F D+
Sbjct: 239 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDATGTKR---F-DSE 294
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN D+KI
Sbjct: 295 ----KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDQKIEFP 350
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + + G
Sbjct: 351 MPNEEARARIMQIHSRKMNVSPDVNYEELARCMDDFNG 388
>ZFIN|ZDB-GENE-030131-666 [details] [associations]
symbol:psmc3 "proteasome (prosome, macropain) 26S
subunit, ATPase, 3" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-666 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
TIGRFAMs:TIGR01242 EMBL:BX957297 IPI:IPI00817732 PRIDE:F1QJQ2
Ensembl:ENSDART00000133705 ArrayExpress:F1QJQ2 Bgee:F1QJQ2
Uniprot:F1QJQ2
Length = 427
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 80/218 (36%), Positives = 125/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 172 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 231
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ T+R F D+
Sbjct: 232 TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKR---F-DSE 287
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 288 ----KAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFP 343
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ + V+ A+ + G
Sbjct: 344 MPNEEARARIMQIHSRKMNVCPDVNFEELARCTDDFNG 381
>SGD|S000003016 [details] [associations]
symbol:RPT6 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0034515
"proteasome storage granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IGI;IMP] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019904 "protein domain specific binding"
evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IPI] [GO:0006289 "nucleotide-excision
repair" evidence=IGI] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IMP] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=IMP]
[GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003016
GO:GO:0005524 GO:GO:0005634 GO:GO:0019904 GO:GO:0051091
GO:GO:0043161 EMBL:BK006941 GO:GO:0016887 GO:GO:0006338
GO:GO:0043433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0034515
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03066
OMA:TEILRIH GeneTree:ENSGT00550000074947 OrthoDB:EOG44N21J
EMBL:X66400 EMBL:L01626 EMBL:Z72570 EMBL:AY693135 PIR:S64052
RefSeq:NP_011467.1 ProteinModelPortal:Q01939 SMR:Q01939
DIP:DIP-979N IntAct:Q01939 MINT:MINT-568023 STRING:Q01939
PaxDb:Q01939 PeptideAtlas:Q01939 EnsemblFungi:YGL048C GeneID:852834
KEGG:sce:YGL048C NextBio:972403 Genevestigator:Q01939
GermOnline:YGL048C Uniprot:Q01939
Length = 405
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 77/215 (35%), Positives = 127/215 (59%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+ + ++E++E++ +K+PELF+ +GI P GV+L GPPG GKTL+A+A+A
Sbjct: 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDAL-ATRRQGIFKDTTDHL 145
F +++G+E V+ +G GS +R+LF A+ + PS+IF+DEID++ +TR +G
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-------- 261
Query: 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPN 205
E + T+ +LL +LDGF+T K + + ATN DRKI P+
Sbjct: 262 -GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS 320
Query: 206 AKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
R EIL+IH+ K+ ++ ++L A+ + G +G
Sbjct: 321 VAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSG 355
>ASPGD|ASPL0000036562 [details] [associations]
symbol:AN2904 species:162425 "Emericella nidulans"
[GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 TIGRFAMs:TIGR01242 EnsemblFungi:CADANIAT00010185
OMA:EDAYSAQ Uniprot:C8VJ79
Length = 422
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 92/253 (36%), Positives = 135/253 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++DV G+D +E++E V L + +L+ ++GI PP GVLL GPPG GKT++ KA+A
Sbjct: 163 VTYADVGGLDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 222
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ A+ N P++IFIDEIDA+AT+R F
Sbjct: 223 STTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKR---FDAQ 279
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGF+ V + ATN DRKI
Sbjct: 280 T-----GADREVQRILLELLNQMDGFEQTSNVKVIMATNRADTLDPALLRPGRLDRKIEF 334
Query: 202 RAPNAKGRTE---ILKIHASKVKMSDSVDLSSY-AKNLPGWTGXXXXXXXXXXXXXXXXK 257
P+ + R E I ASK+ +S VDL S +N P +G K
Sbjct: 335 --PSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEP-LSGAVIAAIMQEAGLRAVRK 391
Query: 258 GHESILSSDMDDA 270
+I+ SD++DA
Sbjct: 392 NRYNIIQSDLEDA 404
>UNIPROTKB|O42586 [details] [associations]
symbol:psmc3-b "26S protease regulatory subunit 6A-B"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 EMBL:Y10460 UniGene:Xl.113 ProteinModelPortal:O42586
Xenbase:XB-GENE-1009853 Uniprot:O42586
Length = 404
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 80/218 (36%), Positives = 125/218 (57%)
Query: 24 KFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82
++SD+ G+D+ ++EL E +V + + E F+ +GI+PP GVL+ GPPG GKTL+A+A A +
Sbjct: 149 QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQ 208
Query: 83 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142
F ++AG + V++ +G G+ +RD F AK PS+IFIDE+DA+ +R F D+
Sbjct: 209 TKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKR---F-DSE 264
Query: 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
A +E + T+ +LL +LDGF V +AATN DRKI
Sbjct: 265 ----KAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFP 320
Query: 203 APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
PN + R I++IH+ K+ +S V+ A+ + G
Sbjct: 321 MPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNG 358
>UNIPROTKB|Q5R8D7 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9601 "Pongo abelii" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03061 CTD:5701 EMBL:CR859816 RefSeq:NP_001126144.1
UniGene:Pab.13078 ProteinModelPortal:Q5R8D7 PRIDE:Q5R8D7
GeneID:100173102 KEGG:pon:100173102 InParanoid:Q5R8D7
Uniprot:Q5R8D7
Length = 433
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 86/219 (39%), Positives = 118/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 288
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 289 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 343
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT ILKIHA + + + A+ P TG
Sbjct: 344 SLPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTG 382
>POMBASE|SPBC4.07c [details] [associations]
symbol:rpt2 "19S proteasome regulatory subunit Rpt2"
species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IC] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IGI] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC4.07c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0007346
GO:GO:0043161 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0016887
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0008540 KO:K03062 OMA:FIRNQER EMBL:Z29366 PIR:S39348
RefSeq:NP_595480.1 ProteinModelPortal:P36612 IntAct:P36612
STRING:P36612 PRIDE:P36612 EnsemblFungi:SPBC4.07c.1 GeneID:2540939
KEGG:spo:SPBC4.07c OrthoDB:EOG4FN7S6 NextBio:20802054
Uniprot:P36612
Length = 448
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 77/206 (37%), Positives = 122/206 (59%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G++ ++E++E V L +PEL+++MGIKPP GV+L G PG GKTL+AKA+A +
Sbjct: 190 YADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 249
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R LF A+ + PS++FIDEIDA+ T+R D
Sbjct: 250 SATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRY----DAQ- 304
Query: 144 HLYNAATQERETTLNQLLIELDGFDTG-KGVIFLAATNXXXXXXXXXXXXXXFDRKIRIR 202
+ A +E + T+ +LL +LDGFDT + + + ATN DRKI
Sbjct: 305 ---SGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFE 361
Query: 203 APNAKGRTEILKIHASKVKMSDSVDL 228
P+ + +I IH SK+ + + V+L
Sbjct: 362 NPDEATKRKIFTIHTSKMNLGEDVNL 387
>ZFIN|ZDB-GENE-040625-69 [details] [associations]
symbol:psmc1b "proteasome (prosome, macropain) 26S
subunit, ATPase, 1b" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-040625-69 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
KO:K03062 GeneTree:ENSGT00550000074818 EMBL:AL935145 EMBL:BC071538
IPI:IPI00495318 RefSeq:NP_001002091.1 UniGene:Dr.1187 STRING:Q6IQ72
Ensembl:ENSDART00000063950 GeneID:415181 KEGG:dre:415181 CTD:415181
InParanoid:Q6IQ72 NextBio:20818851 Uniprot:Q6IQ72
Length = 440
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 76/205 (37%), Positives = 123/205 (60%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+D ++E++E V L +PE +++MGIKPP GV+L G PG GKTL+AKA+A +
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 243
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A+ + PS++FIDEIDA+ T+R D+
Sbjct: 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY----DSN- 298
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 299 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 204 PNAKGRTEILKIHASKVKMSDSVDL 228
P+ K + I +IH S++ +++ V L
Sbjct: 356 PDEKTKRRIFQIHTSRMTVAEDVSL 380
>WB|WBGene00007352 [details] [associations]
symbol:cdc-48.1 species:6239 "Caenorhabditis elegans"
[GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040002
"collagen and cuticulin-based cuticle development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=IMP] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IGI] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0002119
GO:GO:0040011 GO:GO:0040018 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 GO:GO:0040002
HOGENOM:HOG000223224 KO:K13525 OMA:QIANECH InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0034098 GeneTree:ENSGT00700000104534
GO:GO:0071712 EMBL:Z49886 PIR:T18970 RefSeq:NP_496273.1
ProteinModelPortal:P54811 SMR:P54811 DIP:DIP-26650N IntAct:P54811
MINT:MINT-1061999 STRING:P54811 PaxDb:P54811 PRIDE:P54811
EnsemblMetazoa:C06A1.1.1 EnsemblMetazoa:C06A1.1.2 GeneID:174624
KEGG:cel:CELE_C06A1.1 UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1
InParanoid:P54811 NextBio:884814 Uniprot:P54811
Length = 809
Score = 374 (136.7 bits), Expect = 3.1e-33, P = 3.1e-33
Identities = 85/250 (34%), Positives = 133/250 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
+ + D+ G+ + + +++E+V L++P+LF +GIKPP G+LL GPPG GKTL+A+A+A
Sbjct: 207 IGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVAN 266
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F+ + N+P+++FIDEIDA+A +R+
Sbjct: 267 ETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKREKT---- 322
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
N + R ++QLL +DG ++ +AATN FDR+I I
Sbjct: 323 -----NGEVERR--IVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDREIDI 375
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+A GR EIL+IH +K++D VDL A G+ G + E
Sbjct: 376 GIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIREKMEL 435
Query: 262 I-LSSDMDDA 270
I L D DA
Sbjct: 436 IDLEDDQIDA 445
Score = 351 (128.6 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 81/217 (37%), Positives = 117/217 (53%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G+ ELQELV+Y +++PE + K G++P GVL GPPGCGKTL+AKAIA E
Sbjct: 482 WSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 541
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F + G E + + G A +RD+F +A+ P V+F DE+D++A R G D
Sbjct: 542 QANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGG--GAGGD 599
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+R +NQ+L E+DG + K V + ATN D+ I I
Sbjct: 600 ---GGGASDR--VINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPL 654
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ R +ILK K +S +DL+ AKN G++G
Sbjct: 655 PDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSG 691
>UNIPROTKB|P54811 [details] [associations]
symbol:cdc-48.1 "Transitional endoplasmic reticulum ATPase
homolog 1" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0007126 GO:GO:0002119 GO:GO:0040011 GO:GO:0040018
GO:GO:0016887 GO:GO:0000910 eggNOG:COG0464 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0030968 GO:GO:0040002 HOGENOM:HOG000223224 KO:K13525
OMA:QIANECH InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z49886 PIR:T18970
RefSeq:NP_496273.1 ProteinModelPortal:P54811 SMR:P54811
DIP:DIP-26650N IntAct:P54811 MINT:MINT-1061999 STRING:P54811
PaxDb:P54811 PRIDE:P54811 EnsemblMetazoa:C06A1.1.1
EnsemblMetazoa:C06A1.1.2 GeneID:174624 KEGG:cel:CELE_C06A1.1
UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1 InParanoid:P54811
NextBio:884814 Uniprot:P54811
Length = 809
Score = 374 (136.7 bits), Expect = 3.1e-33, P = 3.1e-33
Identities = 85/250 (34%), Positives = 133/250 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
+ + D+ G+ + + +++E+V L++P+LF +GIKPP G+LL GPPG GKTL+A+A+A
Sbjct: 207 IGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVAN 266
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + + G + +R F+ + N+P+++FIDEIDA+A +R+
Sbjct: 267 ETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKREKT---- 322
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
N + R ++QLL +DG ++ +AATN FDR+I I
Sbjct: 323 -----NGEVERR--IVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDREIDI 375
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+A GR EIL+IH +K++D VDL A G+ G + E
Sbjct: 376 GIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIREKMEL 435
Query: 262 I-LSSDMDDA 270
I L D DA
Sbjct: 436 IDLEDDQIDA 445
Score = 351 (128.6 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 81/217 (37%), Positives = 117/217 (53%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SD+ G+ ELQELV+Y +++PE + K G++P GVL GPPGCGKTL+AKAIA E
Sbjct: 482 WSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 541
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F + G E + + G A +RD+F +A+ P V+F DE+D++A R G D
Sbjct: 542 QANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGG--GAGGD 599
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+R +NQ+L E+DG + K V + ATN D+ I I
Sbjct: 600 ---GGGASDR--VINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPL 654
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ R +ILK K +S +DL+ AKN G++G
Sbjct: 655 PDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSG 691
>DICTYBASE|DDB_G0292382 [details] [associations]
symbol:psmC5 "HIV TAT binding-protein-related"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0005838 "proteasome regulatory particle"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0292382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006508 GO:GO:0004175 GO:GO:0030163
GO:GO:0017111 EMBL:AAFI02000190 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0005838 KO:K03066 EMBL:L16579 PIR:JN0610 RefSeq:XP_629632.1
ProteinModelPortal:P34124 STRING:P34124 EnsemblProtists:DDB0216230
GeneID:8628696 KEGG:ddi:DDB_G0292382 OMA:RAALKHE
ProtClustDB:CLSZ2429412 Uniprot:P34124
Length = 403
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 81/248 (32%), Positives = 133/248 (53%)
Query: 28 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86
V G+D+ ++E++E++ +K+PELF+ +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 147 VGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 206
Query: 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLY 146
F +++GSE V+ +G GS +R+LF A+ + PS+IF+DEID++ + R G +
Sbjct: 207 FIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSR-G------ESGS 259
Query: 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNA 206
E + T+ +LL +LDGF++ K + L TN DRKI P
Sbjct: 260 GGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGD 319
Query: 207 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSD 266
GR +ILKIH+ K+ ++ ++L + + G +G + + D
Sbjct: 320 AGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQED 379
Query: 267 MDDAVDRL 274
+ AV ++
Sbjct: 380 FEMAVSKV 387
>TAIR|locus:2061639 [details] [associations]
symbol:RPT2b "regulatory particle AAA-ATPase 2b"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007292
"female gamete generation" evidence=IGI] [GO:0010078 "maintenance
of root meristem identity" evidence=IMP] [GO:0048232 "male gamete
generation" evidence=IGI] [GO:0042023 "DNA endoreduplication"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 EMBL:AC006081 GO:GO:0007292
GO:GO:0010078 HSSP:P43773 GO:GO:0048232 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 UniGene:At.24596 KO:K03062
ProtClustDB:CLSN2683303 EMBL:AF372977 EMBL:AY035072 EMBL:AY056335
EMBL:AY087584 IPI:IPI00521093 PIR:E84585 RefSeq:NP_179604.1
UniGene:At.13496 ProteinModelPortal:Q9SL67 SMR:Q9SL67 IntAct:Q9SL67
STRING:Q9SL67 PaxDb:Q9SL67 PRIDE:Q9SL67 EnsemblPlants:AT2G20140.1
GeneID:816533 KEGG:ath:AT2G20140 GeneFarm:1495 TAIR:At2g20140
InParanoid:Q9SL67 OMA:FIRNQER PhylomeDB:Q9SL67 Uniprot:Q9SL67
Length = 443
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 83/263 (31%), Positives = 136/263 (51%)
Query: 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G++ ++E++E V L +PEL++ +GIKPP GV+L G PG GKTL+AKA+A
Sbjct: 187 YADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 246
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++ GSE ++ +G G +R+LF+ A PS++FIDEIDA+ T+R D
Sbjct: 247 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY----DAN- 301
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGFD+ V + ATN DRKI
Sbjct: 302 ---SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 358
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
P+ K R I +IH SK+ +++ V+L + ++G + +
Sbjct: 359 PDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 418
Query: 264 SSDMDDAVDRLTVGPKRRGIELG 286
D A +++ K+ G+ G
Sbjct: 419 HVDFKKAKEKVMF-KKKEGVPEG 440
>TAIR|locus:2079742 [details] [associations]
symbol:RPT5A "regulatory particle triple-A ATPase 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0005516 "calmodulin binding" evidence=TAS] [GO:0009553 "embryo
sac development" evidence=IGI] [GO:0009555 "pollen development"
evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555 GO:GO:0000502
GO:GO:0017111 GO:GO:0009553 GO:GO:0010498 EMBL:AC009606
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP EMBL:AF081573 EMBL:AF123394 EMBL:AY062705 EMBL:BT000140
IPI:IPI00517001 RefSeq:NP_187204.1 UniGene:At.11513 HSSP:Q9LCZ4
ProteinModelPortal:Q9SEI2 SMR:Q9SEI2 IntAct:Q9SEI2 STRING:Q9SEI2
PaxDb:Q9SEI2 PRIDE:Q9SEI2 EnsemblPlants:AT3G05530.1 GeneID:819718
KEGG:ath:AT3G05530 GeneFarm:2742 TAIR:At3g05530 InParanoid:Q9SEI2
PhylomeDB:Q9SEI2 ProtClustDB:CLSN2679225 Uniprot:Q9SEI2
Length = 424
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 76/217 (35%), Positives = 125/217 (57%)
Query: 25 FSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
++D+ G+++ ++EL E +V + + E F+K+G++PP GVLL GPPG GKTL+A+A A +
Sbjct: 170 YNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 229
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++AG + V++ +G G+ +RD F+ AK P +IFIDEIDA+ T+R F
Sbjct: 230 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKR---FDSEV- 285
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGF + + + +AATN DRKI
Sbjct: 286 ----SGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPH 341
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P + R IL+IH+ K+ + V+ A++ + G
Sbjct: 342 PTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNG 378
>POMBASE|SPBC16C6.07c [details] [associations]
symbol:rpt1 "19S proteasome regulatory subunit Rpt1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC16C6.07c GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0007346 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03061
OMA:DIRWELI PIR:T39558 RefSeq:NP_596805.1 ProteinModelPortal:O42931
IntAct:O42931 STRING:O42931 PRIDE:O42931
EnsemblFungi:SPBC16C6.07c.1 GeneID:2539862 KEGG:spo:SPBC16C6.07c
OrthoDB:EOG4B01XN NextBio:20801008 Uniprot:O42931
Length = 438
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 86/259 (33%), Positives = 124/259 (47%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + DV G E +E L+E+V L +PE F K+GI PP G++L GPPG GKTL A+A+A
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVAN 235
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 236 RTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGAR---FDDG 292
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRK+
Sbjct: 293 A-----GGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEF 347
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHES 261
P+ +GR IL+IHA + + + A+ P TG
Sbjct: 348 GLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRV 407
Query: 262 ILSSDMDDAVDRLTVGPKR 280
D DAV ++ G ++
Sbjct: 408 ATEKDFLDAVQKVVKGNQK 426
>POMBASE|SPCC576.10c [details] [associations]
symbol:rpt3 "19S proteasome regulatory subunit Rpt3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0004175 "endopeptidase activity" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC576.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0006511
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0008540 KO:K03063 OMA:DQTTNVK PIR:T41420 RefSeq:NP_588437.1
ProteinModelPortal:O74894 SMR:O74894 STRING:O74894 PRIDE:O74894
EnsemblFungi:SPCC576.10c.1 GeneID:2539539 KEGG:spo:SPCC576.10c
OrthoDB:EOG46HKKC NextBio:20800700 Uniprot:O74894
Length = 389
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 87/253 (34%), Positives = 132/253 (52%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V ++DV G+D +E++E V L +L+ ++GI PP GVLL GPPG GKT++ KA+A
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 190
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSEFV+ +G G +RD+F+ A+ N P++IFIDEIDA+AT+R F
Sbjct: 191 STAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKR---FDAQ 247
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
T A +E + L +LL ++DGFD G V + ATN DRKI
Sbjct: 248 T-----GADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEF 302
Query: 202 RA-PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHE 260
+ + + R + + +K+ +S VDL ++ +G K
Sbjct: 303 PSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRG 362
Query: 261 SILSSDMDDAVDR 273
IL SD+++A R
Sbjct: 363 VILQSDIEEAYAR 375
>SGD|S000005643 [details] [associations]
symbol:RPT5 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000005643 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006948 GO:GO:0006511 GO:GO:0017111 EMBL:X90518 EMBL:X94335
GO:GO:0045899 GeneTree:ENSGT00560000077230 GO:GO:0070682
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
GO:GO:0008540 PDB:4B4T PDBsum:4B4T OMA:GALMYGP OrthoDB:EOG40VZZ2
EMBL:X73569 EMBL:Z75025 PIR:S46605 RefSeq:NP_014760.3
RefSeq:NP_014762.3 ProteinModelPortal:P33297 SMR:P33297
DIP:DIP-1590N IntAct:P33297 MINT:MINT-383887 STRING:P33297
PaxDb:P33297 PeptideAtlas:P33297 EnsemblFungi:YOR117W GeneID:854284
GeneID:854286 KEGG:sce:YOR117W KEGG:sce:YOR119C KO:K07178
NextBio:976260 Genevestigator:P33297 GermOnline:YOR117W
Uniprot:P33297
Length = 434
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 82/251 (32%), Positives = 129/251 (51%)
Query: 25 FSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83
+SDV G+D+ +EEL E +V +K + F MGI+ P G L+ GPPG GKTL+A+A A +
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTD 143
F ++A + V++ +G G+ +RD F AK P++IFIDE+DA+ T+R F D+
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR---F-DSE- 294
Query: 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRA 203
+ +E + T+ +LL +LDGF + V LAATN DRKI
Sbjct: 295 ---KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351
Query: 204 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESIL 263
P+ R +IL+IH+ K+ D ++ A++ + G G S+
Sbjct: 352 PSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVK 411
Query: 264 SSDMDDAVDRL 274
D + + +
Sbjct: 412 HEDFVEGISEV 422
>UNIPROTKB|Q6GL04 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000785
"chromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0019985
"translesion synthesis" evidence=ISS] [GO:0030433 "ER-associated
protein catabolic process" evidence=ISS] [GO:0032403 "protein
complex binding" evidence=ISS] [GO:0034214 "protein hexamerization"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0035101 "FACT complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0032403 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 HSSP:Q01853 eggNOG:COG0464
GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:BC074716 RefSeq:NP_001005677.1 UniGene:Str.1287
ProteinModelPortal:Q6GL04 SMR:Q6GL04 STRING:Q6GL04 PRIDE:Q6GL04
GeneID:448177 KEGG:xtr:448177 Xenbase:XB-GENE-969573
InParanoid:Q6GL04 Uniprot:Q6GL04
Length = 805
Score = 373 (136.4 bits), Expect = 5.9e-33, P = 5.9e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P++ GR EIL+IH +K+SD VDL A G G
Sbjct: 370 GIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVG 408
Score = 352 (129.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 81/219 (36%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG T K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VDL AK G++G
Sbjct: 646 PLPDEKSRIAILKANLRKSPVAKDVDLDFLAKMTNGFSG 684
>UNIPROTKB|P23787 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8355 "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0006974
"response to DNA damage stimulus" evidence=ISS] [GO:0016567
"protein ubiquitination" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0018279 "protein N-linked glycosylation
via asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0032403 "protein complex binding" evidence=IPI]
[GO:0034214 "protein hexamerization" evidence=IDA] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0035101 "FACT
complex" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226 CTD:7415 EMBL:X54240
EMBL:BC046949 PIR:S19738 RefSeq:NP_001095217.1 UniGene:Xl.8775
ProteinModelPortal:P23787 SMR:P23787 PRIDE:P23787 GeneID:380491
KEGG:xla:380491 Xenbase:XB-GENE-969578 Uniprot:P23787
Length = 805
Score = 373 (136.4 bits), Expect = 5.9e-33, P = 5.9e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P++ GR EIL+IH +K+SD VDL A G G
Sbjct: 370 GIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVG 408
Score = 343 (125.8 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 79/219 (36%), Positives = 116/219 (52%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VD+ AK G++G
Sbjct: 646 PLPDEKSRMAILKANLRKSPVAKDVDVDFLAKMTNGFSG 684
>UNIPROTKB|G3X757 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0070842 "aggresome assembly"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 UniGene:Bt.49331 EMBL:DAAA02023126
ProteinModelPortal:G3X757 Ensembl:ENSBTAT00000019970 Uniprot:G3X757
Length = 806
Score = 373 (136.4 bits), Expect = 5.9e-33, P = 5.9e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EIL+IH +K++D VDL A G G
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 353 (129.3 bits), Expect = 8.5e-30, P = 8.5e-30
Identities = 81/219 (36%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG T K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VDL AK G++G
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
>UNIPROTKB|Q3ZBT1 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
"ER-associated protein catabolic process" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
"lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
EMBL:BC103125 IPI:IPI00710727 RefSeq:NP_001029466.1
UniGene:Bt.49331 ProteinModelPortal:Q3ZBT1 SMR:Q3ZBT1 IntAct:Q3ZBT1
STRING:Q3ZBT1 PRIDE:Q3ZBT1 GeneID:507345 KEGG:bta:507345 CTD:7415
InParanoid:Q3ZBT1 OrthoDB:EOG45TCMK NextBio:20868019 Uniprot:Q3ZBT1
Length = 806
Score = 373 (136.4 bits), Expect = 5.9e-33, P = 5.9e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EIL+IH +K++D VDL A G G
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 353 (129.3 bits), Expect = 8.5e-30, P = 8.5e-30
Identities = 81/219 (36%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG T K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VDL AK G++G
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
>UNIPROTKB|P55072 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9606 "Homo sapiens" [GO:0008289 "lipid binding"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISS] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISS]
[GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=NAS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IDA] [GO:0030433 "ER-associated
protein catabolic process" evidence=IMP;TAS] [GO:0030968
"endoplasmic reticulum unfolded protein response" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0016567 "protein
ubiquitination" evidence=IDA;NAS] [GO:0042981 "regulation of
apoptotic process" evidence=TAS] [GO:0045184 "establishment of
protein localization" evidence=TAS] [GO:0019985 "translesion
synthesis" evidence=IMP] [GO:0035861 "site of double-strand break"
evidence=IDA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IMP] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0019903 "protein phosphatase binding" evidence=IPI] [GO:0045732
"positive regulation of protein catabolic process" evidence=IDA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0031334
GO:GO:0051260 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0006919 EMBL:CH471071 GO:GO:0030433 GO:GO:0006302
GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279 GO:GO:0031593
GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 Orphanet:803 PDB:3TIW
PDBsum:3TIW GO:GO:0030968 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 TCDB:3.A.16.1.1 GO:GO:0070842 GO:GO:0035861
GO:GO:0019985 EMBL:AC004472 EMBL:AL353795 PDB:3QC8 PDB:3QQ8
PDB:3QWZ PDBsum:3QC8 PDBsum:3QQ8 PDBsum:3QWZ HOVERGEN:HBG001226
PDB:3EBB PDBsum:3EBB CTD:7415 OrthoDB:EOG45TCMK EMBL:AF100752
EMBL:AK312310 EMBL:BC110913 EMBL:BC121794 EMBL:Z70768
IPI:IPI00022774 PIR:T02243 RefSeq:NP_009057.1 UniGene:Hs.529782
PDB:3HU1 PDB:3HU2 PDB:3HU3 PDB:3QQ7 PDBsum:3HU1 PDBsum:3HU2
PDBsum:3HU3 PDBsum:3QQ7 ProteinModelPortal:P55072 SMR:P55072
DIP:DIP-33543N IntAct:P55072 MINT:MINT-272884 STRING:P55072
PhosphoSite:P55072 DMDM:6094447 DOSAC-COBS-2DPAGE:P55072 OGP:P55072
REPRODUCTION-2DPAGE:IPI00022774 REPRODUCTION-2DPAGE:P55072
PaxDb:P55072 PRIDE:P55072 Ensembl:ENST00000358901 GeneID:7415
KEGG:hsa:7415 UCSC:uc003zvy.2 GeneCards:GC09M035056 HGNC:HGNC:12666
HPA:CAB005593 HPA:HPA012728 HPA:HPA012814 MIM:167320 MIM:601023
MIM:613954 neXtProt:NX_P55072 Orphanet:52430 PharmGKB:PA37289
InParanoid:P55072 BindingDB:P55072 ChEMBL:CHEMBL1075145 ChiTaRS:VCP
EvolutionaryTrace:P55072 GenomeRNAi:7415 NextBio:29034
ArrayExpress:P55072 Bgee:P55072 CleanEx:HS_VCP
Genevestigator:P55072 GermOnline:ENSG00000165280 Uniprot:P55072
Length = 806
Score = 373 (136.4 bits), Expect = 5.9e-33, P = 5.9e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EIL+IH +K++D VDL A G G
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 353 (129.3 bits), Expect = 8.5e-30, P = 8.5e-30
Identities = 81/219 (36%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG T K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VDL AK G++G
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
>MGI|MGI:99919 [details] [associations]
symbol:Vcp "valosin containing protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=ISO] [GO:0005102
"receptor binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005829
"cytosol" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IGI]
[GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=ISO] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008289 "lipid binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISO] [GO:0019903 "protein phosphatase binding"
evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0019985 "translesion synthesis" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=ISO] [GO:0031334 "positive regulation of protein complex
assembly" evidence=ISO] [GO:0031593 "polyubiquitin binding"
evidence=ISO;IDA] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032436 "positive regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0035861 "site of double-strand break" evidence=ISO] [GO:0042802
"identical protein binding" evidence=ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043234 "protein complex" evidence=IPI] [GO:0043531 "ADP
binding" evidence=ISO] [GO:0045732 "positive regulation of protein
catabolic process" evidence=ISO] [GO:0051260 "protein
homooligomerization" evidence=ISO] [GO:0070842 "aggresome assembly"
evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 MGI:MGI:99919 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 GO:GO:0031334 GO:GO:0051260 GO:GO:0016887
GO:GO:0016567 GO:GO:0008289 GO:GO:0006919 GO:GO:0030433
GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279
GO:GO:0031593 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 GeneTree:ENSGT00700000104534 EMBL:AL672276
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 PDB:2PJH PDBsum:2PJH
PDB:1S3S PDBsum:1S3S HOVERGEN:HBG001226 CTD:7415 OrthoDB:EOG45TCMK
ChiTaRS:VCP EMBL:Z14044 EMBL:AK028264 EMBL:AK030751 EMBL:AK149931
EMBL:AK151109 EMBL:AK151418 EMBL:AK153249 EMBL:AK159177
EMBL:AK159509 EMBL:AK167794 EMBL:AK169140 EMBL:BC043053
EMBL:BC049114 IPI:IPI00622235 PIR:S25197 RefSeq:NP_033529.3
UniGene:Mm.245976 PDB:1E32 PDB:1R7R PDB:3CF0 PDB:3CF1 PDB:3CF2
PDB:3CF3 PDBsum:1E32 PDBsum:1R7R PDBsum:3CF0 PDBsum:3CF1
PDBsum:3CF2 PDBsum:3CF3 DisProt:DP00435 ProteinModelPortal:Q01853
SMR:Q01853 DIP:DIP-29796N IntAct:Q01853 MINT:MINT-220770
STRING:Q01853 PhosphoSite:Q01853 REPRODUCTION-2DPAGE:Q01853
UCD-2DPAGE:Q01853 PaxDb:Q01853 PRIDE:Q01853
Ensembl:ENSMUST00000030164 GeneID:269523 KEGG:mmu:269523
UCSC:uc008sor.2 InParanoid:Q01853 BindingDB:Q01853
EvolutionaryTrace:Q01853 NextBio:392876 Bgee:Q01853 CleanEx:MM_VCP
Genevestigator:Q01853 GermOnline:ENSMUSG00000028452 Uniprot:Q01853
Length = 806
Score = 373 (136.4 bits), Expect = 5.9e-33, P = 5.9e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EIL+IH +K++D VDL A G G
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 353 (129.3 bits), Expect = 8.5e-30, P = 8.5e-30
Identities = 81/219 (36%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG T K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VDL AK G++G
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
>RGD|621595 [details] [associations]
symbol:Vcp "valosin-containing protein" species:10116 "Rattus
norvegicus" [GO:0000502 "proteasome complex" evidence=IEA;ISO]
[GO:0005102 "receptor binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA;IMP]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA]
[GO:0005829 "cytosol" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=ISO;ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IMP] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IEA;ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO;ISS] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0018279 "protein N-linked glycosylation via asparagine"
evidence=ISO;ISS] [GO:0019903 "protein phosphatase binding"
evidence=IEA;ISO] [GO:0019904 "protein domain specific binding"
evidence=IEA;ISO] [GO:0019985 "translesion synthesis"
evidence=ISO;ISS] [GO:0030433 "ER-associated protein catabolic
process" evidence=ISO;ISS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IEA;ISO] [GO:0031334 "positive
regulation of protein complex assembly" evidence=IEA;ISO]
[GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032403
"protein complex binding" evidence=IPI] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO;IMP] [GO:0035861 "site of double-strand
break" evidence=ISO;ISS] [GO:0042802 "identical protein binding"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043531 "ADP binding" evidence=IMP] [GO:0045732
"positive regulation of protein catabolic process" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=IDA] [GO:0070842
"aggresome assembly" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 RGD:621595 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0031334 GO:GO:0051260 GO:GO:0005102 GO:GO:0016887
GO:GO:0016567 GO:GO:0042802 GO:GO:0008289 GO:GO:0006919
GO:GO:0030433 GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464
GO:GO:0018279 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
CTD:7415 OrthoDB:EOG45TCMK EMBL:U11760 EMBL:BC060518
IPI:IPI00212014 PIR:A55190 RefSeq:NP_446316.1 UniGene:Rn.98891
ProteinModelPortal:P46462 SMR:P46462 IntAct:P46462
MINT:MINT-1954391 STRING:P46462 PhosphoSite:P46462
World-2DPAGE:0004:P46462 PRIDE:P46462 Ensembl:ENSRNOT00000046102
GeneID:116643 KEGG:rno:116643 UCSC:RGD:621595 InParanoid:P46462
NextBio:619375 Genevestigator:P46462 GermOnline:ENSRNOG00000034242
Uniprot:P46462
Length = 806
Score = 373 (136.4 bits), Expect = 5.9e-33, P = 5.9e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EIL+IH +K++D VDL A G G
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 353 (129.3 bits), Expect = 8.5e-30, P = 8.5e-30
Identities = 81/219 (36%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG T K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VDL AK G++G
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
>UNIPROTKB|P03974 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9823 "Sus scrofa" [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
"ER-associated protein catabolic process" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
"lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 eggNOG:COG0464
GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
CTD:7415 OrthoDB:EOG45TCMK EMBL:M30143 PIR:A26360
RefSeq:NP_999445.1 UniGene:Ssc.856 ProteinModelPortal:P03974
SMR:P03974 STRING:P03974 GeneID:397524 KEGG:ssc:397524
Uniprot:P03974
Length = 806
Score = 373 (136.4 bits), Expect = 5.9e-33, P = 5.9e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EIL+IH +K++D VDL A G G
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 350 (128.3 bits), Expect = 2.0e-29, P = 2.0e-29
Identities = 80/219 (36%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQ+LV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG T K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VDL AK G++G
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
>UNIPROTKB|F1SIH8 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
EMBL:FP102396 Ensembl:ENSSSCT00000005837 ArrayExpress:F1SIH8
Uniprot:F1SIH8
Length = 808
Score = 373 (136.4 bits), Expect = 6.0e-33, P = 6.0e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 321 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EIL+IH +K++D VDL A G G
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Score = 347 (127.2 bits), Expect = 4.8e-29, P = 4.8e-29
Identities = 82/221 (37%), Positives = 117/221 (52%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 592
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG T K V + ATN D+ I I
Sbjct: 593 -----GGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 202 RAPNAKGRTEILK--IHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + S V + VDL AK G++G
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKAGDVDLEFLAKMTNGFSG 686
>UNIPROTKB|E2RLQ9 [details] [associations]
symbol:VCP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0045732 "positive regulation of protein catabolic process"
evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 EMBL:AAEX03007949 Ensembl:ENSCAFT00000003151
NextBio:20856352 Uniprot:E2RLQ9
Length = 822
Score = 373 (136.4 bits), Expect = 6.2e-33, P = 6.2e-33
Identities = 82/219 (37%), Positives = 123/219 (56%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G + + +++E+V L++P LF +G+KPP G+LL GPPG GKTL+A+A+A
Sbjct: 217 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 276
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E G F+ + G E + L G + +R F+ A+ N P++IFIDE+DA+A +R+ +
Sbjct: 277 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 336
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
ER ++QLL +DG VI +AATN FDR++ I
Sbjct: 337 ----------ERRI-VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 385
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+A GR EIL+IH +K++D VDL A G G
Sbjct: 386 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 424
Score = 353 (129.3 bits), Expect = 8.9e-30, P = 8.9e-30
Identities = 81/219 (36%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V + D+ G+++ ELQELV+Y +++P+ F K G+ P GVL GPPGCGKTL+AKAIA
Sbjct: 490 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 549
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
E F + G E + + G A +R++F +A+ P V+F DE+D++A R G D
Sbjct: 550 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD- 608
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
+R +NQ+L E+DG T K V + ATN D+ I I
Sbjct: 609 -----GGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 661
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ K R ILK + K ++ VDL AK G++G
Sbjct: 662 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 700
>UNIPROTKB|E1C4V5 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
EMBL:AADN02036894 EMBL:AADN02036895 IPI:IPI00602342
Ensembl:ENSGALT00000013403 ArrayExpress:E1C4V5 Uniprot:E1C4V5
Length = 424
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 163 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 222
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 223 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 279
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 280 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 334
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 335 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 373
>UNIPROTKB|F1NFL8 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 OMA:DIRWELI
GeneTree:ENSGT00550000074978 EMBL:AADN02036894 EMBL:AADN02036895
IPI:IPI00821647 Ensembl:ENSGALT00000039595 ArrayExpress:F1NFL8
Uniprot:F1NFL8
Length = 432
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 171 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 230
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 231 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 287
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 288 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 342
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 343 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 381
>UNIPROTKB|Q5E9F9 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0006511 HSSP:Q9WZ49 GO:GO:0000932 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 KO:K03061 OMA:DIRWELI
EMBL:BT020961 EMBL:BC102391 IPI:IPI00693210 RefSeq:NP_001015639.1
UniGene:Bt.24017 ProteinModelPortal:Q5E9F9 SMR:Q5E9F9 PRIDE:Q5E9F9
Ensembl:ENSBTAT00000065774 GeneID:530186 KEGG:bta:530186 CTD:5701
GeneTree:ENSGT00550000074978 OrthoDB:EOG4RXZ05 NextBio:20875201
Uniprot:Q5E9F9
Length = 433
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 288
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 289 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 343
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 344 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 382
>UNIPROTKB|F1PPH7 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 KO:K03061
OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978 EMBL:AAEX03011248
RefSeq:XP_533103.3 ProteinModelPortal:F1PPH7
Ensembl:ENSCAFT00000006754 GeneID:475896 KEGG:cfa:475896
Uniprot:F1PPH7
Length = 433
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 288
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 289 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 343
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 344 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 382
>UNIPROTKB|B7Z5E2 [details] [associations]
symbol:PSMC2 "cDNA FLJ52353, highly similar to 26S protease
regulatory subunit 7" species:9606 "Homo sapiens" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0030163 GO:GO:0017111 GO:GO:0008233 EMBL:AC004668
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 UniGene:Hs.437366
HGNC:HGNC:9548 ChiTaRS:PSMC2 EMBL:AC093701 EMBL:AK298821
IPI:IPI01015219 SMR:B7Z5E2 STRING:B7Z5E2 Ensembl:ENST00000544811
Uniprot:B7Z5E2
Length = 296
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 35 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 94
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 95 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 151
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 152 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 206
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 207 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 245
>UNIPROTKB|P35998 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0016887
GO:GO:0051436 GO:GO:0000932 EMBL:CH471070 GO:GO:0000216
GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:CH236947 GO:GO:0006521 Reactome:REACT_383 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI CTD:5701 EMBL:D11094
EMBL:AB075520 EMBL:BC002589 IPI:IPI00021435 PIR:S24353
RefSeq:NP_001191382.1 RefSeq:NP_002794.1 UniGene:Hs.437366
ProteinModelPortal:P35998 SMR:P35998 DIP:DIP-27554N IntAct:P35998
MINT:MINT-1163662 STRING:P35998 PhosphoSite:P35998 DMDM:547930
OGP:P35998 REPRODUCTION-2DPAGE:IPI00021435
REPRODUCTION-2DPAGE:P35998 PaxDb:P35998 PeptideAtlas:P35998
PRIDE:P35998 DNASU:5701 Ensembl:ENST00000292644
Ensembl:ENST00000435765 GeneID:5701 KEGG:hsa:5701 UCSC:uc003vbs.3
GeneCards:GC07P102984 HGNC:HGNC:9548 HPA:HPA019238 MIM:154365
neXtProt:NX_P35998 PharmGKB:PA33893 InParanoid:P35998
PhylomeDB:P35998 ChiTaRS:PSMC2 GenomeRNAi:5701 NextBio:22150
ArrayExpress:P35998 Bgee:P35998 CleanEx:HS_PSMC2
Genevestigator:P35998 GermOnline:ENSG00000161057 Uniprot:P35998
Length = 433
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 288
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 289 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 343
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 344 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 382
>UNIPROTKB|F1SB53 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
OMA:HIFTIHA EMBL:CU570825 Ensembl:ENSSSCT00000016802 Uniprot:F1SB53
Length = 475
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 214 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 273
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 274 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 330
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 331 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 385
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 386 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 424
>UNIPROTKB|I3LJ30 [details] [associations]
symbol:I3LJ30 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
Ensembl:ENSSSCT00000030050 OMA:WDLAYEN Uniprot:I3LJ30
Length = 434
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 173 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 232
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 233 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 289
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 290 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 344
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 345 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 383
>UNIPROTKB|P46472 [details] [associations]
symbol:psmc2 "26S protease regulatory subunit 7"
species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0006511 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03061 CTD:5701 EMBL:X80157 EMBL:BC054143 PIR:S53709
RefSeq:NP_001084136.1 UniGene:Xl.57157 ProteinModelPortal:P46472
GeneID:399327 KEGG:xla:399327 Xenbase:XB-GENE-1000023
Uniprot:P46472
Length = 433
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 288
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 289 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 343
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 344 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 382
>UNIPROTKB|Q4R4R0 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9541 "Macaca fascicularis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q9WZ49
GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
EMBL:AB169834 ProteinModelPortal:Q4R4R0 SMR:Q4R4R0 PRIDE:Q4R4R0
Uniprot:Q4R4R0
Length = 433
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 288
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 289 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 343
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 344 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 382
>MGI|MGI:109555 [details] [associations]
symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit,
ATPase 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0017025 "TBP-class protein binding"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IDA] [GO:0030163 "protein catabolic process" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
MGI:MGI:109555 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
OrthoDB:EOG4RXZ05 ChiTaRS:PSMC2 EMBL:AK005083 EMBL:AK168548
EMBL:BC005462 EMBL:U61283 IPI:IPI00270326 PIR:S39349
UniGene:Mm.2462 ProteinModelPortal:P46471 SMR:P46471 IntAct:P46471
STRING:P46471 PhosphoSite:P46471 REPRODUCTION-2DPAGE:P46471
SWISS-2DPAGE:P46471 PaxDb:P46471 PRIDE:P46471 InParanoid:P46471
Bgee:P46471 Genevestigator:P46471 GermOnline:ENSMUSG00000028932
Uniprot:P46471
Length = 433
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 288
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 289 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 343
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 344 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 382
>ZFIN|ZDB-GENE-040426-1327 [details] [associations]
symbol:psmc2 "proteasome (prosome, macropain) 26S
subunit, ATPase 2" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-040426-1327 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
KO:K03061 OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978
OrthoDB:EOG4RXZ05 HSSP:Q9LCZ4 EMBL:BX571796 EMBL:BC053187
IPI:IPI00491385 RefSeq:NP_957260.1 UniGene:Dr.75589 STRING:Q7T3B1
Ensembl:ENSDART00000019647 GeneID:393941 KEGG:dre:393941
InParanoid:Q7T3B1 NextBio:20814913 Uniprot:Q7T3B1
Length = 433
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 85/219 (38%), Positives = 117/219 (53%)
Query: 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81
V +SDV G E +E+L+E+V L +PE F +GI+PP GVLL GPPG GKTL A+A+A
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 82 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDT 141
F ++ GSE V+ VG G+ +R+LF+ A+ K +IF DEIDA+ R F D
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR---FDDG 288
Query: 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRI 201
E + T+ +L+ +LDGFD + L ATN DRKI
Sbjct: 289 A-----GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEF 343
Query: 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 240
P+ +GRT I KIHA + + + A+ P TG
Sbjct: 344 SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTG 382
WARNING: HSPs involving 405 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 539 509 0.00087 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 655
No. of states in DFA: 615 (65 KB)
Total size of DFA: 282 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.80u 0.17s 40.97t Elapsed: 00:00:02
Total cpu time: 40.86u 0.18s 41.04t Elapsed: 00:00:02
Start: Mon May 20 15:28:39 2013 End: Mon May 20 15:28:41 2013
WARNINGS ISSUED: 2