Query 009263
Match_columns 539
No_of_seqs 411 out of 3382
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 22:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 2.5E-98 6E-103 753.6 36.0 439 17-497 295-735 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 3.8E-89 8.3E-94 719.1 40.0 450 15-500 139-594 (596)
3 KOG0731 AAA+-type ATPase conta 100.0 1.3E-87 2.7E-92 717.5 39.9 465 18-518 303-770 (774)
4 CHL00176 ftsH cell division pr 100.0 1.5E-80 3.2E-85 674.0 45.6 446 17-499 174-628 (638)
5 PRK10733 hflB ATP-dependent me 100.0 2.1E-78 4.6E-83 664.9 46.4 444 19-497 145-596 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 1.9E-77 4.2E-82 643.5 45.8 446 15-495 44-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 8.1E-57 1.8E-61 437.6 26.2 258 13-278 138-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.7E-52 3.6E-57 474.4 28.1 308 51-400 1622-1984(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 5.3E-49 1.2E-53 408.9 24.1 248 18-276 426-676 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 3.1E-47 6.8E-52 389.9 24.3 246 20-276 505-771 (802)
11 KOG0727 26S proteasome regulat 100.0 5.7E-45 1.2E-49 337.9 23.0 252 17-276 146-398 (408)
12 KOG0728 26S proteasome regulat 100.0 8.4E-45 1.8E-49 336.4 20.9 257 12-276 133-390 (404)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 9E-45 2E-49 371.9 21.9 228 19-257 183-414 (802)
14 KOG0726 26S proteasome regulat 100.0 9.1E-45 2E-49 342.7 15.8 255 16-278 175-430 (440)
15 KOG0729 26S proteasome regulat 100.0 2.7E-44 5.8E-49 335.8 18.6 258 15-280 166-424 (435)
16 KOG0652 26S proteasome regulat 100.0 8.1E-44 1.8E-48 331.6 19.6 256 13-276 158-414 (424)
17 COG1223 Predicted ATPase (AAA+ 100.0 2.3E-43 4.9E-48 328.7 21.2 243 17-274 112-355 (368)
18 KOG0738 AAA+-type ATPase [Post 100.0 1.7E-42 3.6E-47 339.3 21.2 247 17-276 203-471 (491)
19 PTZ00454 26S protease regulato 100.0 2.4E-41 5.2E-46 350.3 27.8 256 14-277 133-389 (398)
20 KOG0736 Peroxisome assembly fa 100.0 2E-41 4.4E-46 355.3 23.4 250 17-276 663-934 (953)
21 PRK03992 proteasome-activating 100.0 9.3E-40 2E-44 340.1 27.6 259 14-280 119-378 (389)
22 PF01434 Peptidase_M41: Peptid 100.0 7.1E-41 1.5E-45 319.9 16.6 204 263-493 1-213 (213)
23 PTZ00361 26 proteosome regulat 100.0 7.7E-40 1.7E-44 340.8 25.0 257 13-277 170-427 (438)
24 KOG0739 AAA+-type ATPase [Post 100.0 1.6E-39 3.4E-44 308.2 12.7 228 17-258 124-354 (439)
25 KOG0735 AAA+-type ATPase [Post 100.0 4.3E-38 9.2E-43 327.4 22.0 227 20-257 661-888 (952)
26 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-37 2.5E-42 349.9 26.3 247 20-276 447-712 (733)
27 TIGR01242 26Sp45 26S proteasom 100.0 3.6E-37 7.9E-42 319.4 26.9 254 13-274 109-363 (364)
28 COG0464 SpoVK ATPases of the A 100.0 1.7E-37 3.7E-42 334.9 25.2 247 18-275 234-484 (494)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 3.1E-37 6.8E-42 325.9 25.4 245 17-276 219-465 (489)
30 KOG0737 AAA+-type ATPase [Post 100.0 8.6E-38 1.9E-42 306.6 19.3 229 16-257 82-314 (386)
31 KOG0651 26S proteasome regulat 100.0 1.4E-38 3.1E-43 303.7 12.7 264 5-276 111-375 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 2E-34 4.4E-39 303.9 25.1 254 14-277 170-481 (512)
33 PLN00020 ribulose bisphosphate 100.0 2.8E-31 6.1E-36 263.6 23.2 264 21-306 110-395 (413)
34 KOG0730 AAA+-type ATPase [Post 100.0 9.8E-32 2.1E-36 280.3 20.2 239 21-278 180-420 (693)
35 TIGR01243 CDC48 AAA family ATP 100.0 4.2E-31 9.1E-36 296.9 25.1 247 20-277 172-438 (733)
36 KOG0741 AAA+-type ATPase [Post 100.0 8.9E-32 1.9E-36 272.3 15.6 248 20-276 213-492 (744)
37 KOG0732 AAA+-type ATPase conta 100.0 2E-31 4.3E-36 292.9 19.3 251 19-280 258-531 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 1.3E-30 2.9E-35 265.3 15.9 246 17-276 144-406 (428)
39 KOG0742 AAA+-type ATPase [Post 99.9 3.7E-22 8E-27 197.3 19.2 231 23-272 352-610 (630)
40 CHL00181 cbbX CbbX; Provisiona 99.9 2E-21 4.3E-26 194.0 20.1 213 25-257 22-257 (287)
41 TIGR02881 spore_V_K stage V sp 99.9 3.4E-21 7.5E-26 190.8 20.4 213 24-257 4-241 (261)
42 KOG0743 AAA+-type ATPase [Post 99.9 2.7E-21 5.8E-26 195.8 17.1 214 20-247 195-413 (457)
43 TIGR02880 cbbX_cfxQ probable R 99.9 5E-21 1.1E-25 191.3 17.7 210 27-257 23-256 (284)
44 PF00004 AAA: ATPase family as 99.9 6.4E-21 1.4E-25 168.4 13.6 130 62-203 1-132 (132)
45 PF05496 RuvB_N: Holliday junc 99.8 4.2E-20 9E-25 173.1 17.3 195 18-252 16-227 (233)
46 PRK00080 ruvB Holliday junctio 99.8 2.1E-19 4.6E-24 184.0 20.0 223 15-274 14-250 (328)
47 KOG0744 AAA+-type ATPase [Post 99.8 3E-20 6.5E-25 179.2 12.7 238 25-273 141-413 (423)
48 COG2255 RuvB Holliday junction 99.8 3.3E-19 7.2E-24 169.9 18.1 221 17-277 17-254 (332)
49 KOG0736 Peroxisome assembly fa 99.8 3.7E-19 7.9E-24 188.4 18.2 206 56-275 428-654 (953)
50 TIGR00635 ruvB Holliday juncti 99.8 1.2E-18 2.6E-23 176.9 19.4 214 24-274 2-229 (305)
51 KOG0735 AAA+-type ATPase [Post 99.8 3.5E-18 7.7E-23 179.4 18.8 243 58-307 430-684 (952)
52 KOG2004 Mitochondrial ATP-depe 99.8 2.1E-18 4.6E-23 181.4 12.1 203 2-219 387-598 (906)
53 COG2256 MGS1 ATPase related to 99.8 7.7E-18 1.7E-22 168.0 15.2 207 20-275 18-239 (436)
54 TIGR00763 lon ATP-dependent pr 99.8 3.3E-18 7.3E-23 193.2 13.8 164 26-217 320-505 (775)
55 TIGR02639 ClpA ATP-dependent C 99.7 2.4E-17 5.2E-22 185.3 18.2 224 21-276 177-431 (731)
56 PRK04195 replication factor C 99.7 4.4E-17 9.6E-22 175.1 19.3 212 15-271 3-222 (482)
57 COG0466 Lon ATP-dependent Lon 99.7 5.5E-18 1.2E-22 179.5 10.7 202 2-218 299-509 (782)
58 PRK12323 DNA polymerase III su 99.7 3.3E-17 7.2E-22 175.0 16.3 206 15-269 5-244 (700)
59 PRK14956 DNA polymerase III su 99.7 7.6E-17 1.6E-21 168.5 18.4 207 16-271 8-243 (484)
60 PRK07003 DNA polymerase III su 99.7 9.3E-17 2E-21 173.6 18.8 206 15-269 5-239 (830)
61 PRK14962 DNA polymerase III su 99.7 9.9E-17 2.2E-21 170.1 18.8 208 17-273 5-241 (472)
62 PRK11034 clpA ATP-dependent Cl 99.7 1.2E-16 2.7E-21 177.6 18.4 222 24-277 184-436 (758)
63 COG0464 SpoVK ATPases of the A 99.7 2.6E-16 5.7E-21 170.2 20.4 219 45-276 4-228 (494)
64 TIGR00362 DnaA chromosomal rep 99.7 3.7E-16 8.1E-21 164.7 20.5 242 21-306 105-358 (405)
65 PRK14960 DNA polymerase III su 99.7 2.2E-16 4.7E-21 169.2 18.6 207 16-271 5-240 (702)
66 PRK06645 DNA polymerase III su 99.7 4.3E-16 9.4E-21 165.9 19.4 218 14-271 9-253 (507)
67 TIGR02902 spore_lonB ATP-depen 99.7 2E-16 4.2E-21 171.1 16.4 219 16-276 55-334 (531)
68 TIGR02928 orc1/cdc6 family rep 99.7 1.9E-15 4.1E-20 157.3 23.4 221 24-274 13-274 (365)
69 PRK14958 DNA polymerase III su 99.7 1.9E-16 4.2E-21 169.6 16.2 207 16-271 6-241 (509)
70 PRK14961 DNA polymerase III su 99.7 6.1E-16 1.3E-20 160.3 19.0 208 16-272 6-242 (363)
71 PRK00149 dnaA chromosomal repl 99.7 4.8E-16 1E-20 165.9 18.4 221 20-275 116-350 (450)
72 PRK13342 recombination factor 99.7 8.4E-16 1.8E-20 162.1 19.9 206 16-275 2-220 (413)
73 PRK07994 DNA polymerase III su 99.7 4.6E-16 9.9E-21 169.0 18.1 207 16-271 6-241 (647)
74 PRK08691 DNA polymerase III su 99.7 5.7E-16 1.2E-20 167.5 18.4 207 16-271 6-241 (709)
75 PRK14949 DNA polymerase III su 99.7 6.6E-16 1.4E-20 170.1 18.4 210 16-268 6-238 (944)
76 PLN03025 replication factor C 99.7 1.1E-15 2.4E-20 155.9 18.0 205 15-270 2-219 (319)
77 PRK12402 replication factor C 99.7 1.8E-15 3.8E-20 155.8 19.7 215 14-273 3-248 (337)
78 PRK14088 dnaA chromosomal repl 99.7 1.2E-15 2.7E-20 161.3 18.8 223 20-275 99-333 (440)
79 PHA02544 44 clamp loader, smal 99.7 2.1E-15 4.5E-20 153.9 18.9 169 9-217 4-173 (316)
80 PRK14951 DNA polymerase III su 99.7 1.1E-15 2.4E-20 165.7 17.7 208 15-271 5-246 (618)
81 PRK00411 cdc6 cell division co 99.7 6.4E-15 1.4E-19 155.0 23.1 223 22-274 26-282 (394)
82 PRK06893 DNA replication initi 99.7 5.2E-15 1.1E-19 143.6 19.3 213 18-271 8-227 (229)
83 TIGR03345 VI_ClpV1 type VI sec 99.7 1.4E-15 3.1E-20 172.2 17.6 219 20-271 181-428 (852)
84 PRK08903 DnaA regulatory inact 99.7 7.4E-15 1.6E-19 142.6 19.1 202 20-272 12-224 (227)
85 PRK10787 DNA-binding ATP-depen 99.7 6.5E-16 1.4E-20 173.1 13.2 188 2-218 298-507 (784)
86 PRK14086 dnaA chromosomal repl 99.6 4.1E-15 9E-20 159.5 18.6 191 60-276 315-517 (617)
87 PRK14964 DNA polymerase III su 99.6 2.7E-15 5.9E-20 158.6 16.8 206 17-271 4-238 (491)
88 KOG0989 Replication factor C, 99.6 2.1E-15 4.6E-20 145.5 14.0 194 15-251 25-235 (346)
89 TIGR03420 DnaA_homol_Hda DnaA 99.6 7.3E-15 1.6E-19 142.4 18.1 205 21-271 10-225 (226)
90 PRK14963 DNA polymerase III su 99.6 5.9E-15 1.3E-19 157.9 18.6 204 18-271 6-237 (504)
91 PRK05563 DNA polymerase III su 99.6 5.7E-15 1.2E-19 160.4 18.5 205 18-271 8-241 (559)
92 PRK14957 DNA polymerase III su 99.6 6.2E-15 1.3E-19 158.0 18.1 208 16-272 6-242 (546)
93 PRK14952 DNA polymerase III su 99.6 4.5E-15 9.6E-20 160.5 17.1 206 18-271 5-241 (584)
94 KOG2028 ATPase related to the 99.6 7.1E-15 1.5E-19 144.3 16.2 211 18-274 130-368 (554)
95 PRK14959 DNA polymerase III su 99.6 6.9E-15 1.5E-19 158.5 17.7 207 16-271 6-241 (624)
96 PRK14969 DNA polymerase III su 99.6 4.6E-15 9.9E-20 160.1 16.4 208 16-272 6-242 (527)
97 PRK13341 recombination factor 99.6 7.3E-15 1.6E-19 162.8 18.3 214 16-275 18-248 (725)
98 TIGR02397 dnaX_nterm DNA polym 99.6 1.1E-14 2.3E-19 151.1 18.1 209 15-272 3-240 (355)
99 PRK07764 DNA polymerase III su 99.6 6.7E-15 1.4E-19 164.9 17.6 207 16-270 5-242 (824)
100 PRK10865 protein disaggregatio 99.6 6.6E-15 1.4E-19 167.3 16.5 170 20-222 172-359 (857)
101 PRK12422 chromosomal replicati 99.6 1.7E-14 3.7E-19 152.4 18.2 192 59-275 141-344 (445)
102 PRK14087 dnaA chromosomal repl 99.6 3E-14 6.6E-19 151.0 19.8 191 59-274 141-348 (450)
103 PF05673 DUF815: Protein of un 99.6 2.2E-14 4.7E-19 136.6 16.6 167 18-224 19-214 (249)
104 PRK08084 DNA replication initi 99.6 3.9E-14 8.4E-19 138.0 18.9 207 19-271 15-233 (235)
105 PTZ00112 origin recognition co 99.6 4.5E-14 9.8E-19 153.4 20.9 216 26-276 755-1008(1164)
106 PRK07940 DNA polymerase III su 99.6 1.8E-14 4E-19 149.5 17.4 185 24-246 3-214 (394)
107 PRK05896 DNA polymerase III su 99.6 1.4E-14 3E-19 155.4 16.7 208 15-271 5-241 (605)
108 PRK07133 DNA polymerase III su 99.6 1.8E-14 3.9E-19 157.4 17.5 214 15-271 7-240 (725)
109 PRK08727 hypothetical protein; 99.6 4.5E-14 9.9E-19 137.4 18.0 208 20-273 13-230 (233)
110 PRK14953 DNA polymerase III su 99.6 3.3E-14 7.2E-19 151.6 18.3 213 16-271 6-241 (486)
111 PRK08451 DNA polymerase III su 99.6 2.3E-14 4.9E-19 152.9 16.9 207 16-271 4-239 (535)
112 PRK09111 DNA polymerase III su 99.6 3.7E-14 7.9E-19 154.3 18.9 216 14-272 12-255 (598)
113 TIGR03346 chaperone_ClpB ATP-d 99.6 1.4E-14 2.9E-19 165.4 16.3 206 19-257 166-399 (852)
114 COG2812 DnaX DNA polymerase II 99.6 1.7E-14 3.7E-19 152.1 15.6 209 18-269 8-239 (515)
115 PRK14965 DNA polymerase III su 99.6 2E-14 4.3E-19 156.9 16.4 206 16-270 6-240 (576)
116 PF00308 Bac_DnaA: Bacterial d 99.6 3.4E-14 7.5E-19 136.7 14.6 200 21-254 3-216 (219)
117 COG0593 DnaA ATPase involved i 99.6 9.5E-14 2.1E-18 142.4 18.4 225 19-276 80-315 (408)
118 PRK14970 DNA polymerase III su 99.6 6.6E-14 1.4E-18 145.8 17.3 216 14-272 5-231 (367)
119 PRK00440 rfc replication facto 99.6 8.4E-14 1.8E-18 142.1 17.4 208 14-272 5-224 (319)
120 PRK05342 clpX ATP-dependent pr 99.6 1.1E-13 2.4E-18 144.5 18.2 181 24-214 68-322 (412)
121 CHL00095 clpC Clp protease ATP 99.6 3E-14 6.5E-19 162.2 15.2 202 22-256 175-403 (821)
122 PRK14955 DNA polymerase III su 99.6 6.1E-14 1.3E-18 147.1 16.2 218 16-272 6-255 (397)
123 COG1474 CDC6 Cdc6-related prot 99.6 3.1E-13 6.8E-18 139.0 21.0 217 26-274 17-265 (366)
124 PRK06305 DNA polymerase III su 99.6 1.3E-13 2.9E-18 146.1 18.8 209 15-272 6-244 (451)
125 PRK06647 DNA polymerase III su 99.6 8.9E-14 1.9E-18 150.6 17.3 207 16-271 6-241 (563)
126 PRK05642 DNA replication initi 99.5 3.2E-13 6.9E-18 131.5 19.1 179 59-271 45-232 (234)
127 PRK13407 bchI magnesium chelat 99.5 4.4E-14 9.5E-19 143.3 12.9 219 20-276 2-308 (334)
128 PRK14948 DNA polymerase III su 99.5 2.3E-13 5E-18 149.0 18.9 210 16-269 6-240 (620)
129 PRK06620 hypothetical protein; 99.5 2E-13 4.4E-18 130.7 15.6 195 20-271 10-213 (214)
130 PRK14954 DNA polymerase III su 99.5 2.6E-13 5.6E-18 147.9 17.8 217 16-271 6-254 (620)
131 PRK14950 DNA polymerase III su 99.5 2.6E-13 5.7E-18 148.8 18.0 207 16-271 6-242 (585)
132 TIGR02640 gas_vesic_GvpN gas v 99.5 5.1E-13 1.1E-17 132.3 18.2 186 59-276 21-259 (262)
133 CHL00081 chlI Mg-protoporyphyr 99.5 4.2E-13 9E-18 136.4 16.0 225 16-277 7-325 (350)
134 TIGR00382 clpX endopeptidase C 99.5 1E-12 2.2E-17 136.5 17.2 220 27-256 78-386 (413)
135 PRK11034 clpA ATP-dependent Cl 99.5 1.1E-12 2.4E-17 146.2 18.7 166 27-219 459-668 (758)
136 COG2607 Predicted ATPase (AAA+ 99.5 3.6E-12 7.9E-17 119.2 18.2 171 16-224 50-246 (287)
137 TIGR02030 BchI-ChlI magnesium 99.5 8.9E-13 1.9E-17 134.0 14.8 218 24-277 2-312 (337)
138 COG1224 TIP49 DNA helicase TIP 99.5 3.5E-12 7.5E-17 125.5 18.2 99 174-275 322-433 (450)
139 TIGR02903 spore_lon_C ATP-depe 99.5 4.3E-12 9.2E-17 139.6 21.0 220 20-275 148-431 (615)
140 TIGR00390 hslU ATP-dependent p 99.5 3.6E-13 7.9E-18 137.8 11.6 176 26-213 12-342 (441)
141 TIGR02639 ClpA ATP-dependent C 99.5 2.3E-12 4.9E-17 145.2 19.1 202 26-254 454-711 (731)
142 PRK14971 DNA polymerase III su 99.4 1.7E-12 3.7E-17 142.3 16.2 208 15-271 6-243 (614)
143 PRK05201 hslU ATP-dependent pr 99.4 6.3E-13 1.4E-17 136.2 11.1 177 26-214 15-345 (443)
144 TIGR01650 PD_CobS cobaltochela 99.4 6.7E-13 1.5E-17 132.8 10.4 140 58-219 63-235 (327)
145 KOG1969 DNA replication checkp 99.4 7.2E-12 1.6E-16 133.1 17.7 217 14-257 259-518 (877)
146 PRK09087 hypothetical protein; 99.4 2.9E-12 6.3E-17 123.8 13.6 172 60-274 45-222 (226)
147 cd00009 AAA The AAA+ (ATPases 99.4 9.3E-12 2E-16 110.8 14.9 124 58-202 18-150 (151)
148 TIGR02442 Cob-chelat-sub cobal 99.4 6.3E-12 1.4E-16 139.1 15.0 214 24-276 2-306 (633)
149 PRK09112 DNA polymerase III su 99.4 2.7E-11 5.8E-16 124.3 17.5 191 20-250 17-244 (351)
150 PRK13531 regulatory ATPase Rav 99.3 5.1E-11 1.1E-15 124.6 18.7 195 58-278 38-287 (498)
151 COG0542 clpA ATP-binding subun 99.3 6.5E-12 1.4E-16 137.5 12.5 160 26-218 491-706 (786)
152 PF05621 TniB: Bacterial TniB 99.3 6.6E-11 1.4E-15 116.4 18.4 217 26-269 34-284 (302)
153 PHA02244 ATPase-like protein 99.3 4.7E-11 1E-15 120.8 17.5 126 59-207 119-264 (383)
154 COG0542 clpA ATP-binding subun 99.3 2.8E-11 6E-16 132.6 16.4 207 18-256 162-395 (786)
155 TIGR03345 VI_ClpV1 type VI sec 99.3 3.5E-11 7.5E-16 136.8 17.8 198 26-254 566-830 (852)
156 KOG0991 Replication factor C, 99.3 2.1E-11 4.6E-16 113.4 12.6 209 12-271 13-234 (333)
157 COG3829 RocR Transcriptional r 99.3 1E-11 2.2E-16 129.3 11.3 251 20-310 239-532 (560)
158 TIGR00368 Mg chelatase-related 99.3 4.9E-11 1.1E-15 127.5 16.8 209 23-272 189-497 (499)
159 PRK10865 protein disaggregatio 99.3 9E-11 2E-15 133.8 19.9 168 25-219 567-781 (857)
160 TIGR03015 pepcterm_ATPase puta 99.3 2.1E-10 4.6E-15 114.1 19.8 192 60-275 44-267 (269)
161 COG0714 MoxR-like ATPases [Gen 99.3 1.1E-10 2.3E-15 119.8 18.1 131 58-216 42-202 (329)
162 TIGR03346 chaperone_ClpB ATP-d 99.3 9.6E-11 2.1E-15 134.1 19.3 203 26-255 565-826 (852)
163 PRK07471 DNA polymerase III su 99.3 7.8E-11 1.7E-15 121.5 16.6 187 20-248 13-240 (365)
164 CHL00095 clpC Clp protease ATP 99.3 1.6E-10 3.5E-15 131.9 19.3 167 26-219 509-734 (821)
165 TIGR00602 rad24 checkpoint pro 99.3 8.6E-11 1.9E-15 128.2 16.2 227 13-272 71-353 (637)
166 PRK05564 DNA polymerase III su 99.3 1.2E-10 2.5E-15 118.7 15.6 170 23-237 1-182 (313)
167 smart00350 MCM minichromosome 99.2 1E-10 2.2E-15 126.6 15.6 190 59-275 236-505 (509)
168 KOG1942 DNA helicase, TBP-inte 99.2 5.2E-10 1.1E-14 107.5 18.1 130 118-275 296-439 (456)
169 PF01078 Mg_chelatase: Magnesi 99.2 1.6E-11 3.5E-16 114.8 6.7 46 24-83 1-46 (206)
170 smart00382 AAA ATPases associa 99.2 1.4E-10 3E-15 102.3 11.2 128 59-204 2-147 (148)
171 TIGR00764 lon_rel lon-related 99.2 5.1E-10 1.1E-14 122.9 17.3 103 171-275 267-392 (608)
172 TIGR00678 holB DNA polymerase 99.2 3.3E-10 7.1E-15 106.6 13.7 144 57-237 12-183 (188)
173 COG3604 FhlA Transcriptional r 99.2 4.2E-10 9E-15 115.9 15.2 201 21-254 218-456 (550)
174 PRK07399 DNA polymerase III su 99.2 2.8E-10 6.1E-15 115.2 13.6 183 24-248 2-223 (314)
175 COG2204 AtoC Response regulato 99.2 2.1E-10 4.5E-15 119.7 12.3 209 23-269 138-386 (464)
176 PRK15424 propionate catabolism 99.2 1.3E-10 2.9E-15 125.0 10.9 206 23-267 216-478 (538)
177 PF07728 AAA_5: AAA domain (dy 99.2 3.1E-11 6.6E-16 107.8 5.0 113 61-195 1-139 (139)
178 PRK11331 5-methylcytosine-spec 99.2 4.9E-10 1.1E-14 116.4 14.4 158 25-203 174-357 (459)
179 TIGR02031 BchD-ChlD magnesium 99.1 4.7E-10 1E-14 123.0 14.9 191 60-276 17-260 (589)
180 PRK09862 putative ATP-dependen 99.1 9E-10 2E-14 117.3 16.2 210 23-273 188-491 (506)
181 PF06068 TIP49: TIP49 C-termin 99.1 8.7E-10 1.9E-14 110.6 14.8 72 19-97 17-90 (398)
182 TIGR02329 propionate_PrpR prop 99.1 4.3E-10 9.3E-15 121.2 13.0 215 22-270 208-466 (526)
183 PRK05707 DNA polymerase III su 99.1 1.2E-09 2.7E-14 111.2 14.8 156 57-246 20-203 (328)
184 COG0470 HolB ATPase involved i 99.1 2.5E-09 5.4E-14 109.4 17.2 148 26-212 1-176 (325)
185 PRK04132 replication factor C 99.1 1.4E-09 2.9E-14 121.8 16.3 172 61-271 566-751 (846)
186 TIGR02974 phageshock_pspF psp 99.1 1.2E-09 2.5E-14 111.7 14.6 191 28-254 1-233 (329)
187 KOG0741 AAA+-type ATPase [Post 99.1 1.3E-09 2.9E-14 112.2 14.8 154 41-214 526-683 (744)
188 COG0606 Predicted ATPase with 99.1 1.1E-10 2.4E-15 120.1 6.4 210 22-272 175-483 (490)
189 TIGR01817 nifA Nif-specific re 99.1 8.6E-10 1.9E-14 120.5 13.4 207 20-268 190-439 (534)
190 COG1219 ClpX ATP-dependent pro 99.1 3.2E-10 6.9E-15 110.3 8.5 130 28-167 63-203 (408)
191 PRK11608 pspF phage shock prot 99.1 2E-09 4.3E-14 110.1 14.3 193 25-253 5-239 (326)
192 PRK10820 DNA-binding transcrip 99.1 2.3E-09 5E-14 116.4 15.6 209 20-267 198-447 (520)
193 PRK05022 anaerobic nitric oxid 99.1 1.3E-09 2.8E-14 118.2 13.0 193 24-255 185-421 (509)
194 COG1221 PspF Transcriptional r 99.0 7.8E-10 1.7E-14 113.5 10.3 197 21-256 73-311 (403)
195 PF07724 AAA_2: AAA domain (Cd 99.0 5.8E-10 1.2E-14 103.0 8.3 113 58-183 2-131 (171)
196 PRK11388 DNA-binding transcrip 99.0 3.6E-09 7.9E-14 118.1 16.3 208 22-271 321-568 (638)
197 COG1220 HslU ATP-dependent pro 99.0 2E-09 4.4E-14 105.5 12.3 70 27-96 16-87 (444)
198 PRK08058 DNA polymerase III su 99.0 1.3E-09 2.9E-14 111.5 11.7 149 24-215 3-180 (329)
199 KOG1514 Origin recognition com 99.0 6.8E-09 1.5E-13 110.7 17.0 194 60-276 423-657 (767)
200 KOG2035 Replication factor C, 99.0 1.8E-08 3.9E-13 96.5 17.4 184 15-237 2-220 (351)
201 PRK08116 hypothetical protein; 99.0 2.4E-09 5.3E-14 106.2 10.8 69 59-129 114-189 (268)
202 PRK15429 formate hydrogenlyase 99.0 9.7E-09 2.1E-13 115.5 16.8 199 22-254 372-609 (686)
203 COG1239 ChlI Mg-chelatase subu 98.9 9.9E-09 2.1E-13 104.5 13.4 216 21-276 12-324 (423)
204 PRK12377 putative replication 98.9 9.8E-09 2.1E-13 100.2 12.5 102 17-130 65-175 (248)
205 smart00763 AAA_PrkA PrkA AAA d 98.9 1.7E-08 3.8E-13 102.3 14.5 81 24-111 48-141 (361)
206 PF13177 DNA_pol3_delta2: DNA 98.9 1.4E-08 3.1E-13 93.0 11.9 133 30-203 1-160 (162)
207 KOG0990 Replication factor C, 98.9 1.3E-08 2.9E-13 99.5 11.7 193 12-251 27-234 (360)
208 PF00158 Sigma54_activat: Sigm 98.9 9.4E-09 2E-13 94.6 10.3 93 28-133 1-108 (168)
209 PRK07952 DNA replication prote 98.9 2.2E-08 4.8E-13 97.5 12.7 105 17-130 63-174 (244)
210 PTZ00111 DNA replication licen 98.9 3.8E-08 8.2E-13 109.9 16.1 129 57-212 490-652 (915)
211 PF07726 AAA_3: ATPase family 98.9 1.1E-09 2.3E-14 94.3 2.9 109 61-195 1-129 (131)
212 PRK06964 DNA polymerase III su 98.9 2.1E-08 4.5E-13 102.2 12.6 133 57-216 19-203 (342)
213 PRK06871 DNA polymerase III su 98.9 5.4E-08 1.2E-12 98.6 15.4 129 57-216 22-178 (325)
214 PRK13765 ATP-dependent proteas 98.9 2.4E-08 5.2E-13 109.5 13.6 100 172-273 277-399 (637)
215 PF03215 Rad17: Rad17 cell cyc 98.8 8.5E-08 1.8E-12 103.0 15.6 212 12-255 5-269 (519)
216 KOG0745 Putative ATP-dependent 98.8 2.1E-08 4.5E-13 101.5 10.1 76 60-135 227-308 (564)
217 PRK07993 DNA polymerase III su 98.8 6.6E-08 1.4E-12 98.8 13.8 151 57-242 22-200 (334)
218 TIGR02915 PEP_resp_reg putativ 98.8 4.6E-08 1E-12 104.7 12.5 207 24-268 137-383 (445)
219 PRK08769 DNA polymerase III su 98.8 1.7E-07 3.7E-12 94.8 15.5 157 57-246 24-208 (319)
220 KOG2680 DNA helicase TIP49, TB 98.8 3.4E-07 7.3E-12 88.7 16.4 92 182-276 339-431 (454)
221 PRK08181 transposase; Validate 98.8 6.6E-08 1.4E-12 95.6 12.0 71 59-131 106-180 (269)
222 PRK08939 primosomal protein Dn 98.8 3.4E-08 7.4E-13 99.7 10.1 101 22-129 123-228 (306)
223 COG1484 DnaC DNA replication p 98.7 1.2E-07 2.6E-12 93.2 12.5 72 58-130 104-179 (254)
224 PRK06835 DNA replication prote 98.7 5.1E-08 1.1E-12 99.1 9.7 69 60-130 184-258 (329)
225 PRK06526 transposase; Provisio 98.7 4.9E-08 1.1E-12 95.9 9.2 72 58-131 97-172 (254)
226 KOG2227 Pre-initiation complex 98.7 5.7E-07 1.2E-11 92.3 17.0 204 26-259 150-384 (529)
227 PRK13406 bchD magnesium chelat 98.7 7.5E-08 1.6E-12 104.9 11.5 189 60-276 26-252 (584)
228 PRK06090 DNA polymerase III su 98.7 2.7E-07 5.8E-12 93.3 13.9 129 57-215 23-178 (319)
229 PRK11361 acetoacetate metaboli 98.7 3E-07 6.5E-12 98.7 15.2 206 25-271 142-390 (457)
230 PRK10923 glnG nitrogen regulat 98.7 2.7E-07 5.8E-12 99.5 14.3 207 24-271 136-385 (469)
231 PF01637 Arch_ATPase: Archaeal 98.7 1.6E-07 3.4E-12 90.8 11.2 184 29-245 2-233 (234)
232 PF13173 AAA_14: AAA domain 98.6 2.8E-07 6.1E-12 81.0 10.9 69 60-130 3-73 (128)
233 PF01695 IstB_IS21: IstB-like 98.6 5.7E-08 1.2E-12 90.4 6.6 71 57-129 45-119 (178)
234 PRK09183 transposase/IS protei 98.6 1.2E-07 2.5E-12 93.7 9.1 74 57-131 100-177 (259)
235 PF03969 AFG1_ATPase: AFG1-lik 98.6 1.6E-07 3.4E-12 96.8 10.1 140 56-231 59-207 (362)
236 KOG1051 Chaperone HSP104 and r 98.6 3.2E-07 7E-12 102.4 13.0 129 26-182 562-711 (898)
237 PF14532 Sigma54_activ_2: Sigm 98.6 4.9E-08 1.1E-12 87.0 5.2 81 29-133 1-84 (138)
238 PRK15115 response regulator Gl 98.6 4.2E-07 9.2E-12 97.2 13.0 184 59-271 157-381 (444)
239 TIGR01818 ntrC nitrogen regula 98.6 3.3E-07 7.2E-12 98.6 12.0 211 25-271 133-381 (463)
240 PRK08699 DNA polymerase III su 98.6 2.9E-07 6.2E-12 93.8 10.7 132 57-215 19-183 (325)
241 KOG1970 Checkpoint RAD17-RFC c 98.6 1.9E-06 4.2E-11 90.0 16.1 213 12-254 68-320 (634)
242 PRK06921 hypothetical protein; 98.6 6.2E-07 1.3E-11 88.9 12.1 69 58-129 116-188 (266)
243 PF13401 AAA_22: AAA domain; P 98.5 4.5E-07 9.7E-12 79.6 9.4 73 59-131 4-100 (131)
244 PRK10365 transcriptional regul 98.4 2.8E-06 6E-11 90.8 14.2 181 59-271 162-386 (441)
245 COG1485 Predicted ATPase [Gene 98.4 6.7E-07 1.5E-11 89.2 7.4 169 25-230 24-209 (367)
246 PF05729 NACHT: NACHT domain 98.4 5.2E-06 1.1E-10 75.7 12.6 140 61-219 2-165 (166)
247 COG3267 ExeA Type II secretory 98.4 2.5E-05 5.3E-10 74.9 16.9 185 61-268 53-267 (269)
248 cd01120 RecA-like_NTPases RecA 98.4 1.9E-06 4E-11 78.2 9.2 72 62-133 2-100 (165)
249 COG1241 MCM2 Predicted ATPase 98.4 3.9E-06 8.4E-11 91.9 13.0 222 25-275 285-593 (682)
250 KOG0480 DNA replication licens 98.3 3E-06 6.5E-11 89.8 11.3 223 24-275 343-644 (764)
251 PF00493 MCM: MCM2/3/5 family 98.3 1.3E-07 2.8E-12 96.9 0.7 220 26-274 24-326 (331)
252 TIGR02237 recomb_radB DNA repa 98.3 4.2E-06 9.2E-11 80.0 10.9 78 55-132 8-111 (209)
253 COG3283 TyrR Transcriptional r 98.3 5.6E-06 1.2E-10 82.3 11.5 210 21-268 199-443 (511)
254 PF12775 AAA_7: P-loop contain 98.3 1.9E-06 4.1E-11 85.7 7.9 138 59-219 33-195 (272)
255 PF12774 AAA_6: Hydrolytic ATP 98.2 1.2E-05 2.5E-10 77.9 12.3 129 59-212 32-175 (231)
256 PRK05917 DNA polymerase III su 98.2 8.1E-06 1.7E-10 81.1 10.6 118 57-204 17-154 (290)
257 COG3284 AcoR Transcriptional a 98.2 2.9E-06 6.3E-11 90.6 7.9 183 61-272 338-555 (606)
258 PF00931 NB-ARC: NB-ARC domain 98.2 1.8E-05 3.9E-10 79.4 13.4 159 58-247 18-203 (287)
259 KOG0478 DNA replication licens 98.2 1.6E-05 3.5E-10 85.0 13.1 127 57-207 460-616 (804)
260 KOG2383 Predicted ATPase [Gene 98.2 2.1E-05 4.6E-10 79.5 13.1 160 56-252 111-298 (467)
261 PRK05818 DNA polymerase III su 98.2 3E-05 6.6E-10 75.5 13.7 121 57-204 5-147 (261)
262 PLN03210 Resistant to P. syrin 98.1 2.3E-05 4.9E-10 93.5 14.1 158 21-219 179-366 (1153)
263 cd01124 KaiC KaiC is a circadi 98.1 3.4E-05 7.3E-10 72.1 12.2 71 62-132 2-109 (187)
264 PRK07276 DNA polymerase III su 98.1 6.1E-05 1.3E-09 75.1 14.5 154 57-247 22-198 (290)
265 KOG0482 DNA replication licens 98.1 2.9E-05 6.3E-10 80.3 12.0 234 27-278 343-642 (721)
266 KOG2170 ATPase of the AAA+ sup 98.1 9.9E-05 2.1E-09 72.2 14.1 229 27-290 83-334 (344)
267 cd01121 Sms Sms (bacterial rad 98.1 1.2E-05 2.7E-10 83.2 8.6 79 55-133 78-173 (372)
268 PRK07132 DNA polymerase III su 98.0 7.3E-05 1.6E-09 75.1 13.7 126 58-215 17-160 (299)
269 PHA00729 NTP-binding motif con 98.0 8.1E-06 1.8E-10 78.0 6.3 25 60-84 18-42 (226)
270 TIGR01618 phage_P_loop phage n 98.0 2.5E-05 5.4E-10 74.8 9.6 24 58-81 11-34 (220)
271 PF00910 RNA_helicase: RNA hel 98.0 4.1E-06 8.9E-11 71.1 3.7 23 62-84 1-23 (107)
272 PRK11823 DNA repair protein Ra 98.0 2E-05 4.3E-10 84.0 9.3 79 55-133 76-171 (446)
273 KOG1968 Replication factor C, 98.0 1.5E-05 3.3E-10 89.9 8.1 211 14-253 308-535 (871)
274 PRK09361 radB DNA repair and r 98.0 6.5E-05 1.4E-09 72.7 11.2 39 55-93 19-60 (225)
275 PRK08533 flagellar accessory p 98.0 7.6E-05 1.7E-09 72.5 11.5 77 55-131 20-130 (230)
276 TIGR02012 tigrfam_recA protein 97.9 7.8E-05 1.7E-09 75.4 11.0 79 55-133 51-148 (321)
277 COG1618 Predicted nucleotide k 97.9 7.8E-05 1.7E-09 66.5 9.3 26 58-83 4-29 (179)
278 PRK06067 flagellar accessory p 97.9 0.00012 2.5E-09 71.4 11.2 40 55-94 21-63 (234)
279 TIGR02688 conserved hypothetic 97.8 0.00033 7.2E-09 72.6 14.5 64 57-132 207-274 (449)
280 PF14516 AAA_35: AAA-like doma 97.8 0.0014 3E-08 67.3 19.1 177 58-251 30-244 (331)
281 cd03283 ABC_MutS-like MutS-lik 97.8 9.6E-05 2.1E-09 70.1 9.6 74 56-129 22-116 (199)
282 PRK08118 topology modulation p 97.8 3.1E-05 6.8E-10 71.3 6.0 64 61-126 3-66 (167)
283 KOG0477 DNA replication licens 97.8 0.00013 2.8E-09 77.4 11.1 33 58-90 481-513 (854)
284 COG1116 TauB ABC-type nitrate/ 97.8 5.5E-05 1.2E-09 72.6 7.4 26 58-83 28-53 (248)
285 PRK05973 replicative DNA helic 97.8 0.00022 4.7E-09 69.1 11.5 40 55-94 60-102 (237)
286 KOG2543 Origin recognition com 97.8 0.00045 9.7E-09 69.8 13.9 162 26-218 6-194 (438)
287 cd01394 radB RadB. The archaea 97.8 0.00021 4.5E-09 68.8 11.2 39 55-93 15-56 (218)
288 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.6E-10 68.0 3.6 30 62-91 2-31 (121)
289 cd00983 recA RecA is a bacter 97.8 0.00016 3.6E-09 73.1 10.4 79 55-133 51-148 (325)
290 TIGR00416 sms DNA repair prote 97.8 9.4E-05 2E-09 78.9 9.1 78 55-132 90-184 (454)
291 KOG1051 Chaperone HSP104 and r 97.8 0.0002 4.2E-09 80.6 11.9 163 24-219 184-365 (898)
292 PRK15455 PrkA family serine pr 97.8 4.9E-05 1.1E-09 81.3 6.8 63 23-92 73-137 (644)
293 COG4619 ABC-type uncharacteriz 97.7 0.00019 4E-09 64.6 9.3 28 56-83 26-53 (223)
294 PRK07261 topology modulation p 97.7 5.7E-05 1.2E-09 69.9 6.3 36 61-96 2-37 (171)
295 KOG2228 Origin recognition com 97.7 0.00024 5.2E-09 70.6 10.8 161 26-217 24-219 (408)
296 cd01128 rho_factor Transcripti 97.7 0.00036 7.7E-09 68.4 12.1 28 58-85 15-42 (249)
297 cd03216 ABC_Carb_Monos_I This 97.7 0.00012 2.5E-09 67.2 8.1 107 56-184 23-144 (163)
298 PF05707 Zot: Zonular occluden 97.7 2.5E-05 5.5E-10 73.7 3.7 123 62-204 3-146 (193)
299 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00045 9.9E-09 67.4 12.5 40 55-94 17-59 (237)
300 PRK00131 aroK shikimate kinase 97.7 0.00013 2.9E-09 67.1 8.4 34 57-90 2-35 (175)
301 COG1126 GlnQ ABC-type polar am 97.7 2.9E-05 6.3E-10 72.6 3.7 24 58-81 27-50 (240)
302 COG3854 SpoIIIAA ncharacterize 97.7 0.00029 6.4E-09 66.4 10.2 70 60-129 138-229 (308)
303 PRK14722 flhF flagellar biosyn 97.7 0.00012 2.6E-09 75.6 8.4 110 57-189 135-266 (374)
304 cd01131 PilT Pilus retraction 97.7 0.00017 3.7E-09 68.4 8.8 67 61-127 3-83 (198)
305 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00028 6.2E-09 68.6 10.6 40 55-94 15-63 (235)
306 TIGR02858 spore_III_AA stage I 97.7 0.00012 2.6E-09 72.5 8.0 68 60-127 112-203 (270)
307 COG5271 MDN1 AAA ATPase contai 97.7 0.00022 4.8E-09 82.6 10.7 139 58-219 1542-1705(4600)
308 cd03222 ABC_RNaseL_inhibitor T 97.7 8.8E-05 1.9E-09 68.9 6.5 74 56-129 22-100 (177)
309 PF06745 KaiC: KaiC; InterPro 97.7 0.00034 7.5E-09 67.6 10.9 40 55-94 15-58 (226)
310 COG1373 Predicted ATPase (AAA+ 97.7 0.00057 1.2E-08 71.8 13.2 123 61-211 39-161 (398)
311 PF07693 KAP_NTPase: KAP famil 97.7 0.00076 1.6E-08 68.9 13.8 30 57-86 18-47 (325)
312 PRK09376 rho transcription ter 97.6 0.00048 1E-08 70.9 11.8 74 62-135 172-273 (416)
313 cd01393 recA_like RecA is a b 97.6 0.00027 5.8E-09 68.3 9.6 117 55-180 15-167 (226)
314 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00028 6.2E-09 63.2 8.9 72 56-129 23-99 (144)
315 PF13671 AAA_33: AAA domain; P 97.6 0.0002 4.4E-09 63.7 7.9 35 62-98 2-36 (143)
316 COG1120 FepC ABC-type cobalami 97.6 0.0002 4.2E-09 69.9 8.1 27 57-83 26-52 (258)
317 PF06309 Torsin: Torsin; Inte 97.6 0.00039 8.4E-09 60.0 8.9 52 26-83 25-77 (127)
318 PRK12723 flagellar biosynthesi 97.6 0.00057 1.2E-08 71.1 11.8 110 58-189 173-306 (388)
319 cd01129 PulE-GspE PulE/GspE Th 97.6 0.00055 1.2E-08 67.8 11.1 70 60-129 81-160 (264)
320 COG3842 PotA ABC-type spermidi 97.6 9.5E-05 2.1E-09 75.3 5.6 28 54-81 24-53 (352)
321 cd03238 ABC_UvrA The excision 97.6 0.00021 4.5E-09 66.3 7.2 74 56-129 18-118 (176)
322 PRK14974 cell division protein 97.5 0.00078 1.7E-08 68.8 11.7 74 58-131 139-235 (336)
323 cd03228 ABCC_MRP_Like The MRP 97.5 0.00024 5.2E-09 65.6 7.1 107 56-185 25-158 (171)
324 cd00984 DnaB_C DnaB helicase C 97.5 0.00055 1.2E-08 66.9 10.0 39 55-93 9-51 (242)
325 PF13604 AAA_30: AAA domain; P 97.5 0.00073 1.6E-08 63.9 10.3 35 60-94 19-56 (196)
326 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00013 2.7E-09 66.4 4.9 74 56-129 22-109 (157)
327 cd01122 GP4d_helicase GP4d_hel 97.5 0.00054 1.2E-08 68.2 9.9 39 55-93 26-68 (271)
328 PRK09354 recA recombinase A; P 97.5 0.00053 1.2E-08 70.0 9.9 78 55-132 56-152 (349)
329 cd03247 ABCC_cytochrome_bd The 97.5 0.00066 1.4E-08 63.1 9.7 74 56-129 25-127 (178)
330 COG4088 Predicted nucleotide k 97.5 0.00046 1E-08 64.1 8.2 23 62-84 4-26 (261)
331 PF13191 AAA_16: AAA ATPase do 97.5 7.7E-05 1.7E-09 69.4 3.3 59 28-95 2-63 (185)
332 cd00046 DEXDc DEAD-like helica 97.5 0.0013 2.8E-08 57.2 11.0 23 61-83 2-24 (144)
333 cd00544 CobU Adenosylcobinamid 97.5 0.00073 1.6E-08 62.2 9.6 71 62-134 2-89 (169)
334 COG4178 ABC-type uncharacteriz 97.5 0.00024 5.3E-09 76.8 7.4 27 55-81 415-441 (604)
335 PRK06762 hypothetical protein; 97.5 0.00042 9.2E-09 63.5 8.1 40 59-98 2-41 (166)
336 PF03266 NTPase_1: NTPase; In 97.5 6.7E-05 1.5E-09 69.1 2.7 27 61-87 1-30 (168)
337 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.0012 2.6E-08 65.4 11.8 39 55-93 32-73 (259)
338 COG1118 CysA ABC-type sulfate/ 97.5 0.00032 7E-09 69.0 7.4 25 58-82 27-51 (345)
339 TIGR01420 pilT_fam pilus retra 97.5 0.00022 4.7E-09 73.6 6.6 71 58-128 121-205 (343)
340 PF00437 T2SE: Type II/IV secr 97.5 0.00011 2.3E-09 73.2 4.2 102 18-129 96-208 (270)
341 PRK04841 transcriptional regul 97.4 0.0049 1.1E-07 72.1 18.5 159 59-247 32-226 (903)
342 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.001 2.2E-08 63.9 10.6 22 60-81 30-51 (213)
343 PRK04296 thymidine kinase; Pro 97.4 0.00049 1.1E-08 64.8 8.1 70 61-130 4-90 (190)
344 PRK05800 cobU adenosylcobinami 97.4 0.002 4.2E-08 59.5 11.9 72 61-133 3-91 (170)
345 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00062 1.4E-08 62.6 8.6 74 56-129 24-120 (166)
346 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.0022 4.7E-08 62.0 12.7 41 55-95 12-55 (224)
347 cd03246 ABCC_Protease_Secretio 97.4 0.00062 1.3E-08 63.0 8.3 74 56-129 25-125 (173)
348 PRK04328 hypothetical protein; 97.4 0.0023 5E-08 63.0 12.7 39 55-93 19-60 (249)
349 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0022 4.7E-08 62.2 12.4 39 55-93 16-57 (229)
350 COG1066 Sms Predicted ATP-depe 97.4 0.00062 1.3E-08 69.6 8.6 154 56-223 90-262 (456)
351 PRK11889 flhF flagellar biosyn 97.4 0.0026 5.6E-08 65.7 13.2 72 58-129 240-331 (436)
352 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00032 7E-09 64.9 6.2 74 56-129 23-124 (173)
353 PF00448 SRP54: SRP54-type pro 97.4 0.0016 3.5E-08 61.6 10.8 71 59-129 1-94 (196)
354 COG1136 SalX ABC-type antimicr 97.4 0.00066 1.4E-08 64.9 8.1 26 56-81 28-53 (226)
355 KOG3347 Predicted nucleotide k 97.4 0.00017 3.7E-09 63.3 3.6 33 59-91 7-39 (176)
356 smart00534 MUTSac ATPase domai 97.3 0.0013 2.9E-08 61.5 9.9 20 62-81 2-21 (185)
357 COG3839 MalK ABC-type sugar tr 97.3 0.00046 1E-08 70.0 7.2 25 58-82 28-52 (338)
358 PRK00625 shikimate kinase; Pro 97.3 0.00022 4.7E-09 66.0 4.3 31 61-91 2-32 (173)
359 PRK12724 flagellar biosynthesi 97.3 0.0044 9.6E-08 64.7 14.3 38 58-95 222-263 (432)
360 COG2805 PilT Tfp pilus assembl 97.3 0.0012 2.6E-08 64.9 9.4 72 58-129 123-209 (353)
361 PRK13947 shikimate kinase; Pro 97.3 0.00022 4.8E-09 65.7 4.3 31 61-91 3-33 (171)
362 TIGR02525 plasmid_TraJ plasmid 97.3 0.001 2.2E-08 68.9 9.6 70 60-129 150-236 (372)
363 COG1121 ZnuC ABC-type Mn/Zn tr 97.3 0.00016 3.4E-09 70.3 3.4 59 105-185 144-202 (254)
364 PRK03839 putative kinase; Prov 97.3 0.0002 4.2E-09 66.8 4.0 31 61-91 2-32 (180)
365 COG0703 AroK Shikimate kinase 97.3 0.00067 1.4E-08 61.9 7.2 32 60-91 3-34 (172)
366 cd03214 ABC_Iron-Siderophores_ 97.3 0.00053 1.1E-08 63.9 6.9 28 56-83 22-49 (180)
367 cd00227 CPT Chloramphenicol (C 97.3 0.00024 5.1E-09 65.9 4.5 39 59-97 2-40 (175)
368 PRK13948 shikimate kinase; Pro 97.3 0.00057 1.2E-08 63.7 7.0 43 57-101 8-50 (182)
369 COG2884 FtsE Predicted ATPase 97.3 0.00085 1.8E-08 61.7 7.8 34 50-83 17-52 (223)
370 KOG0058 Peptide exporter, ABC 97.3 0.00084 1.8E-08 73.2 9.1 27 55-81 490-516 (716)
371 TIGR02655 circ_KaiC circadian 97.3 0.002 4.4E-08 69.6 12.2 78 55-132 259-367 (484)
372 COG2804 PulE Type II secretory 97.3 0.00066 1.4E-08 71.5 8.0 98 18-129 230-338 (500)
373 cd03243 ABC_MutS_homologs The 97.3 0.0012 2.5E-08 62.8 9.0 25 57-81 27-51 (202)
374 TIGR02782 TrbB_P P-type conjug 97.3 0.00026 5.7E-09 71.4 4.8 71 58-128 131-214 (299)
375 PF10236 DAP3: Mitochondrial r 97.3 0.018 3.8E-07 58.5 18.1 122 118-245 156-308 (309)
376 KOG0481 DNA replication licens 97.3 0.0013 2.9E-08 68.5 9.7 62 27-88 332-393 (729)
377 TIGR00767 rho transcription te 97.3 0.0014 3.1E-08 67.7 9.9 27 58-84 167-193 (415)
378 PRK00771 signal recognition pa 97.3 0.0033 7.1E-08 66.6 12.9 39 57-95 93-134 (437)
379 PRK10536 hypothetical protein; 97.3 0.0013 2.9E-08 64.0 8.9 46 23-82 52-97 (262)
380 cd00464 SK Shikimate kinase (S 97.2 0.00029 6.4E-09 63.5 4.1 31 61-91 1-31 (154)
381 cd03232 ABC_PDR_domain2 The pl 97.2 0.0022 4.8E-08 60.4 10.2 27 56-82 30-56 (192)
382 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0018 3.9E-08 61.4 9.6 21 60-80 29-49 (200)
383 PHA02774 E1; Provisional 97.2 0.0014 3.1E-08 70.4 9.6 34 59-92 434-468 (613)
384 PRK13949 shikimate kinase; Pro 97.2 0.00031 6.6E-09 64.8 4.1 31 61-91 3-33 (169)
385 cd01130 VirB11-like_ATPase Typ 97.2 0.0005 1.1E-08 64.4 5.5 72 57-128 23-110 (186)
386 cd03229 ABC_Class3 This class 97.2 0.00032 6.8E-09 65.3 4.1 28 56-83 23-50 (178)
387 cd03213 ABCG_EPDR ABCG transpo 97.2 0.0016 3.6E-08 61.4 9.0 28 56-83 32-59 (194)
388 PHA02624 large T antigen; Prov 97.2 0.00072 1.6E-08 72.9 7.2 40 55-94 427-466 (647)
389 TIGR02238 recomb_DMC1 meiotic 97.2 0.0018 3.9E-08 65.7 9.8 116 55-179 92-243 (313)
390 PRK13900 type IV secretion sys 97.2 0.00045 9.7E-09 70.7 5.5 73 57-129 158-246 (332)
391 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0031 6.7E-08 62.0 11.3 35 62-96 2-39 (249)
392 COG4650 RtcR Sigma54-dependent 97.2 0.0006 1.3E-08 66.4 5.9 80 55-134 204-298 (531)
393 COG1117 PstB ABC-type phosphat 97.2 0.0018 3.9E-08 60.7 8.7 29 53-81 25-55 (253)
394 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00032 7E-09 65.3 4.0 34 62-97 2-35 (183)
395 cd03215 ABC_Carb_Monos_II This 97.2 0.0014 2.9E-08 61.3 8.1 28 56-83 23-50 (182)
396 COG1127 Ttg2A ABC-type transpo 97.2 0.0012 2.6E-08 63.0 7.5 34 50-83 23-58 (263)
397 PRK06217 hypothetical protein; 97.2 0.00037 8E-09 65.2 4.2 31 61-91 3-33 (183)
398 PRK13541 cytochrome c biogenes 97.2 0.0039 8.4E-08 58.8 11.1 28 56-83 23-50 (195)
399 COG5245 DYN1 Dynein, heavy cha 97.2 0.001 2.2E-08 76.8 8.1 178 56-256 1491-1718(3164)
400 PF04665 Pox_A32: Poxvirus A32 97.2 0.0052 1.1E-07 59.6 11.9 133 57-216 11-169 (241)
401 PRK14532 adenylate kinase; Pro 97.2 0.00039 8.5E-09 65.2 4.1 36 61-98 2-37 (188)
402 PRK13946 shikimate kinase; Pro 97.2 0.0012 2.7E-08 61.7 7.5 34 58-91 9-42 (184)
403 COG4133 CcmA ABC-type transpor 97.1 0.003 6.5E-08 58.1 9.5 28 56-83 25-52 (209)
404 PRK10416 signal recognition pa 97.1 0.0063 1.4E-07 61.9 13.0 38 57-94 112-152 (318)
405 PRK13539 cytochrome c biogenes 97.1 0.0019 4.2E-08 61.5 8.9 28 56-83 25-52 (207)
406 TIGR02533 type_II_gspE general 97.1 0.0014 3E-08 70.6 8.7 95 21-129 217-322 (486)
407 cd02027 APSK Adenosine 5'-phos 97.1 0.0018 3.9E-08 58.3 8.2 36 62-97 2-40 (149)
408 cd03269 ABC_putative_ATPase Th 97.1 0.0024 5.2E-08 61.0 9.5 28 56-83 23-50 (210)
409 PRK12339 2-phosphoglycerate ki 97.1 0.011 2.4E-07 55.8 13.7 29 59-87 3-31 (197)
410 TIGR02788 VirB11 P-type DNA tr 97.1 0.00058 1.3E-08 69.4 5.4 73 56-128 141-228 (308)
411 TIGR02236 recomb_radA DNA repa 97.1 0.0028 6.1E-08 64.5 10.4 40 55-94 91-139 (310)
412 PLN03187 meiotic recombination 97.1 0.0028 6E-08 65.0 10.3 116 55-179 122-273 (344)
413 COG1124 DppF ABC-type dipeptid 97.1 0.0017 3.6E-08 62.2 7.9 27 56-82 30-56 (252)
414 TIGR02655 circ_KaiC circadian 97.1 0.0052 1.1E-07 66.5 12.9 41 55-95 17-61 (484)
415 PRK04301 radA DNA repair and r 97.1 0.0023 5.1E-08 65.3 9.6 40 55-94 98-146 (317)
416 PRK13764 ATPase; Provisional 97.1 0.00062 1.3E-08 74.4 5.7 71 58-129 256-335 (602)
417 PTZ00088 adenylate kinase 1; P 97.1 0.00058 1.3E-08 66.1 4.8 37 58-96 5-41 (229)
418 cd02020 CMPK Cytidine monophos 97.1 0.00047 1E-08 61.5 3.9 30 62-91 2-31 (147)
419 PLN02200 adenylate kinase fami 97.1 0.00072 1.6E-08 65.8 5.5 40 56-97 40-79 (234)
420 PRK13851 type IV secretion sys 97.1 0.00061 1.3E-08 69.9 5.2 73 56-128 159-246 (344)
421 PRK14531 adenylate kinase; Pro 97.1 0.00056 1.2E-08 64.0 4.4 35 60-96 3-37 (183)
422 TIGR03499 FlhF flagellar biosy 97.1 0.003 6.5E-08 63.3 10.0 38 58-95 193-235 (282)
423 COG2274 SunT ABC-type bacterio 97.1 0.0011 2.4E-08 74.3 7.4 31 53-83 491-523 (709)
424 PRK11650 ugpC glycerol-3-phosp 97.1 0.00087 1.9E-08 69.4 6.2 28 56-83 27-54 (356)
425 cd02021 GntK Gluconate kinase 97.1 0.00048 1E-08 62.0 3.8 33 62-96 2-34 (150)
426 PRK13538 cytochrome c biogenes 97.1 0.0036 7.7E-08 59.5 10.0 28 56-83 24-51 (204)
427 PRK13833 conjugal transfer pro 97.1 0.0008 1.7E-08 68.3 5.7 71 58-128 143-225 (323)
428 PTZ00035 Rad51 protein; Provis 97.1 0.0035 7.6E-08 64.4 10.5 115 55-178 114-264 (337)
429 PF12780 AAA_8: P-loop contain 97.1 0.0048 1E-07 61.1 11.1 91 26-128 8-99 (268)
430 PRK06547 hypothetical protein; 97.1 0.00059 1.3E-08 63.1 4.4 34 57-90 13-46 (172)
431 COG1102 Cmk Cytidylate kinase 97.1 0.0005 1.1E-08 61.5 3.6 28 62-89 3-30 (179)
432 PRK13695 putative NTPase; Prov 97.1 0.0067 1.5E-07 56.1 11.5 23 61-83 2-24 (174)
433 PRK06696 uridine kinase; Valid 97.1 0.0012 2.5E-08 63.9 6.6 40 58-97 21-63 (223)
434 cd03115 SRP The signal recogni 97.1 0.0067 1.5E-07 55.9 11.4 35 61-95 2-39 (173)
435 PRK06581 DNA polymerase III su 97.1 0.022 4.8E-07 54.8 14.9 137 58-221 14-165 (263)
436 PF01745 IPT: Isopentenyl tran 97.1 0.001 2.2E-08 62.4 5.8 134 61-219 3-141 (233)
437 PF13245 AAA_19: Part of AAA d 97.0 0.001 2.2E-08 52.6 4.8 33 61-93 12-51 (76)
438 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.0012 2.6E-08 63.5 6.4 28 56-83 27-54 (218)
439 PRK09519 recA DNA recombinatio 97.0 0.004 8.6E-08 69.9 11.2 121 55-180 56-195 (790)
440 PRK11432 fbpC ferric transport 97.0 0.00097 2.1E-08 68.9 6.1 28 56-83 29-56 (351)
441 COG1131 CcmA ABC-type multidru 97.0 0.0014 3.1E-08 66.0 7.1 27 57-83 29-55 (293)
442 cd03227 ABC_Class2 ABC-type Cl 97.0 0.003 6.4E-08 57.8 8.6 23 59-81 21-43 (162)
443 PRK14530 adenylate kinase; Pro 97.0 0.00064 1.4E-08 65.3 4.4 30 61-90 5-34 (215)
444 PRK10436 hypothetical protein; 97.0 0.002 4.3E-08 68.7 8.5 95 22-129 194-298 (462)
445 cd01428 ADK Adenylate kinase ( 97.0 0.00056 1.2E-08 64.3 3.9 34 62-97 2-35 (194)
446 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.0027 5.9E-08 65.7 9.2 71 59-129 134-223 (358)
447 PRK13540 cytochrome c biogenes 97.0 0.0049 1.1E-07 58.4 10.4 28 56-83 24-51 (200)
448 PRK10867 signal recognition pa 97.0 0.0098 2.1E-07 62.9 13.5 74 57-130 98-195 (433)
449 PRK08154 anaerobic benzoate ca 97.0 0.002 4.3E-08 65.5 8.1 35 56-90 130-164 (309)
450 PLN03186 DNA repair protein RA 97.0 0.0032 7E-08 64.6 9.6 117 55-180 119-271 (342)
451 PRK13894 conjugal transfer ATP 97.0 0.0009 1.9E-08 68.1 5.5 71 58-128 147-229 (319)
452 TIGR01313 therm_gnt_kin carboh 97.0 0.00053 1.1E-08 62.7 3.5 32 62-95 1-32 (163)
453 PF10443 RNA12: RNA12 protein; 97.0 0.018 3.8E-07 59.9 14.9 35 184-220 198-232 (431)
454 TIGR02868 CydC thiol reductant 97.0 0.0045 9.7E-08 67.9 11.4 28 56-83 358-385 (529)
455 PRK12608 transcription termina 97.0 0.0055 1.2E-07 63.0 11.1 24 60-83 134-157 (380)
456 cd02019 NK Nucleoside/nucleoti 97.0 0.0021 4.5E-08 49.8 6.2 30 62-91 2-32 (69)
457 PF05272 VirE: Virulence-assoc 97.0 0.0023 5E-08 60.5 7.8 28 55-82 48-75 (198)
458 COG5271 MDN1 AAA ATPase contai 97.0 0.0021 4.7E-08 75.0 8.5 134 61-217 890-1047(4600)
459 PRK09452 potA putrescine/sperm 97.0 0.0011 2.4E-08 69.1 6.0 28 56-83 37-64 (375)
460 TIGR02239 recomb_RAD51 DNA rep 97.0 0.0034 7.4E-08 63.9 9.4 40 55-94 92-140 (316)
461 cd03217 ABC_FeS_Assembly ABC-t 97.0 0.0027 5.9E-08 60.2 8.2 27 56-82 23-49 (200)
462 PRK05057 aroK shikimate kinase 97.0 0.00082 1.8E-08 62.2 4.4 34 59-92 4-37 (172)
463 TIGR00064 ftsY signal recognit 97.0 0.027 5.9E-07 56.1 15.5 38 57-94 70-110 (272)
464 cd03226 ABC_cobalt_CbiO_domain 97.0 0.0039 8.5E-08 59.3 9.2 28 56-83 23-50 (205)
465 cd03233 ABC_PDR_domain1 The pl 97.0 0.0038 8.1E-08 59.3 9.0 28 56-83 30-57 (202)
466 TIGR03864 PQQ_ABC_ATP ABC tran 97.0 0.0018 3.9E-08 63.1 7.0 28 56-83 24-51 (236)
467 PTZ00202 tuzin; Provisional 97.0 0.0064 1.4E-07 63.3 11.1 64 22-94 258-321 (550)
468 PRK05541 adenylylsulfate kinas 97.0 0.0024 5.3E-08 59.1 7.5 41 57-97 5-48 (176)
469 PRK11607 potG putrescine trans 97.0 0.0013 2.7E-08 68.8 6.1 28 56-83 42-69 (377)
470 PF13481 AAA_25: AAA domain; P 97.0 0.0025 5.3E-08 59.8 7.6 75 59-133 32-156 (193)
471 cd03301 ABC_MalK_N The N-termi 97.0 0.001 2.2E-08 63.6 5.1 28 56-83 23-50 (213)
472 PF08423 Rad51: Rad51; InterP 97.0 0.0045 9.7E-08 61.1 9.6 117 55-180 34-186 (256)
473 cd01125 repA Hexameric Replica 97.0 0.0031 6.7E-08 61.6 8.5 21 62-82 4-24 (239)
474 cd03218 ABC_YhbG The ABC trans 97.0 0.0016 3.6E-08 63.1 6.5 28 56-83 23-50 (232)
475 TIGR03265 PhnT2 putative 2-ami 96.9 0.0014 3E-08 67.9 6.2 28 56-83 27-54 (353)
476 PRK13543 cytochrome c biogenes 96.9 0.0034 7.5E-08 60.2 8.6 28 56-83 34-61 (214)
477 PRK11176 lipid transporter ATP 96.9 0.0047 1E-07 68.5 10.9 28 56-83 366-393 (582)
478 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0055 1.2E-07 58.3 9.8 24 58-81 28-51 (204)
479 TIGR00960 3a0501s02 Type II (G 96.9 0.0033 7.1E-08 60.3 8.4 28 56-83 26-53 (216)
480 TIGR02211 LolD_lipo_ex lipopro 96.9 0.0014 3.1E-08 63.0 5.9 28 56-83 28-55 (221)
481 COG1122 CbiO ABC-type cobalt t 96.9 0.0019 4.2E-08 62.6 6.7 28 56-83 27-54 (235)
482 PRK09302 circadian clock prote 96.9 0.01 2.3E-07 64.7 13.2 116 55-187 27-182 (509)
483 PF09848 DUF2075: Uncharacteri 96.9 0.0021 4.6E-08 66.6 7.5 23 61-83 3-25 (352)
484 COG4608 AppF ABC-type oligopep 96.9 0.0017 3.7E-08 63.3 6.2 76 56-131 36-140 (268)
485 TIGR02673 FtsE cell division A 96.9 0.0028 6E-08 60.7 7.8 28 56-83 25-52 (214)
486 PRK14527 adenylate kinase; Pro 96.9 0.00083 1.8E-08 63.2 4.0 33 57-89 4-36 (191)
487 PRK03731 aroL shikimate kinase 96.9 0.001 2.2E-08 61.4 4.4 31 60-90 3-33 (171)
488 PRK09544 znuC high-affinity zi 96.9 0.0018 3.8E-08 63.9 6.4 28 56-83 27-54 (251)
489 PRK14528 adenylate kinase; Pro 96.9 0.00095 2.1E-08 62.6 4.2 30 61-90 3-32 (186)
490 PRK05703 flhF flagellar biosyn 96.9 0.014 3.1E-07 61.8 13.6 38 58-95 220-262 (424)
491 TIGR01425 SRP54_euk signal rec 96.9 0.015 3.2E-07 61.3 13.4 72 58-129 99-193 (429)
492 COG0563 Adk Adenylate kinase a 96.9 0.00095 2.1E-08 62.0 4.0 33 61-95 2-34 (178)
493 cd03265 ABC_DrrA DrrA is the A 96.9 0.0023 5E-08 61.6 6.8 28 56-83 23-50 (220)
494 cd03293 ABC_NrtD_SsuB_transpor 96.9 0.0016 3.4E-08 62.8 5.6 28 56-83 27-54 (220)
495 cd03287 ABC_MSH3_euk MutS3 hom 96.9 0.007 1.5E-07 58.3 9.9 25 57-81 29-53 (222)
496 TIGR01188 drrA daunorubicin re 96.9 0.0046 1E-07 62.7 9.1 28 56-83 16-43 (302)
497 TIGR01360 aden_kin_iso1 adenyl 96.9 0.0011 2.3E-08 61.9 4.2 29 61-89 5-33 (188)
498 COG1936 Predicted nucleotide k 96.9 0.00077 1.7E-08 61.1 3.0 30 61-91 2-31 (180)
499 cd03259 ABC_Carb_Solutes_like 96.9 0.0013 2.9E-08 62.9 4.9 28 56-83 23-50 (213)
500 PRK11248 tauB taurine transpor 96.9 0.0015 3.3E-08 64.4 5.4 28 56-83 24-51 (255)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-98 Score=753.58 Aligned_cols=439 Identities=40% Similarity=0.661 Sum_probs=408.4
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
.+...+++|+||.|+|++|++|+++++++++|..|..+|-+.|+||||+||||||||+||||+|+++++||++.++++|-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 44456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
++|+|.+++++|++|..|+.++||||||||||+++.+|... ......+++|+||.+||||..+.+||||
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~-----------~~~y~kqTlNQLLvEmDGF~qNeGiIvi 443 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS-----------DQHYAKQTLNQLLVEMDGFKQNEGIIVI 443 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc-----------HHHHHHHHHHHHHHHhcCcCcCCceEEE
Confidence 99999999999999999999999999999999999988542 2225689999999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~ 256 (539)
++||.|+.||+||.||||||++|.+|.||...|.+||+.|+.++.+..++|...+|+-|+||+|+||+|++|.|+..|..
T Consensus 444 gATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 444 GATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred eccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCCccccceeee
Q 009263 257 KGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFH 336 (539)
Q Consensus 257 ~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg~~lG~~~~~ 336 (539)
.+...+++.|++.|-+++..|+++++..++++.++..||||.|||+++.+.... .|++++||.|||.+||.+.+.
T Consensus 524 dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A-----~PlhKaTImPRG~sLG~t~~L 598 (752)
T KOG0734|consen 524 DGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGA-----MPLHKATIMPRGPSLGHTSQL 598 (752)
T ss_pred cCcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCC-----ccccceeeccCCccccceeec
Confidence 999999999999999999999999999999999999999999999999988776 899999999999999999998
Q ss_pred cCccccccccCHHHHHHHHHHHhhHHHHHHHHhCCC--CCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCccccc
Q 009263 337 RLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV 414 (539)
Q Consensus 337 ~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~~g~~--stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~~~ 414 (539)
|. .+.+..+ |.++++++.||||||+|||++||.+ +|||++ ||.+||.+|+.||+.||||+++ ||+++..+.
T Consensus 599 Pe-~D~~~~T-k~q~LA~lDV~MGGRvAEELIfG~D~iTsGAss-Dl~qAT~lA~~MVt~fGMSd~v----G~v~~~~~~ 671 (752)
T KOG0734|consen 599 PE-KDRYSIT-KAQLLARLDVCMGGRVAEELIFGTDKITSGASS-DLDQATKLARRMVTKFGMSDKV----GPVTLSAED 671 (752)
T ss_pred Cc-cchhhHH-HHHHHHHHHHhhcchHHHHHhccCCcccccccc-hHHHHHHHHHHHHHHcCccccc----cceeeeccC
Confidence 86 5666666 9999999999999999999999964 788886 9999999999999999999999 998776554
Q ss_pred cccCCCcccCCCccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHH
Q 009263 415 KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFIL 494 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~~~ei~~il 494 (539)
. + ........+.++.+|+++|+++|+||+.||+.|...+++||++|+++|||+++||++++
T Consensus 672 ~--~-----------------~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl 732 (752)
T KOG0734|consen 672 N--S-----------------SSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVL 732 (752)
T ss_pred C--C-----------------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 1 0 01222233457789999999999999999999999999999999999999999999999
Q ss_pred hcC
Q 009263 495 NNY 497 (539)
Q Consensus 495 ~~~ 497 (539)
+.-
T Consensus 733 ~g~ 735 (752)
T KOG0734|consen 733 KGK 735 (752)
T ss_pred hcc
Confidence 854
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-89 Score=719.06 Aligned_cols=450 Identities=44% Similarity=0.746 Sum_probs=423.8
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
++.+....++|+|+.|.+++|+++.++++++++|..|..+|.+.|+|+||+||||||||+||+++|+++++||+++++++
T Consensus 139 ~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~ 218 (596)
T COG0465 139 LYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 218 (596)
T ss_pred HhcccccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchh
Confidence 34455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
|.++|+|.+++++|++|.+|++++|||+||||||+++..|..+.++ .+.++.+++|++|.+||+|..+.+|+
T Consensus 219 FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg--------gnderEQTLNQlLvEmDGF~~~~gvi 290 (596)
T COG0465 219 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG--------GNDEREQTLNQLLVEMDGFGGNEGVI 290 (596)
T ss_pred hhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC--------CchHHHHHHHHHHhhhccCCCCCceE
Confidence 9999999999999999999999999999999999999999766555 78889999999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 009263 175 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 175 vIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A 254 (539)
||++||+|+.+|+||+||||||+.|.++.||...|.+|++.|+++.++..++++..+|+.|+||+++|+.+++|+|+..|
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~a 370 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLA 370 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCCcccccee
Q 009263 255 VRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLV 334 (539)
Q Consensus 255 ~~~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg~~lG~~~ 334 (539)
.++++..|++.||.+|++++..|++++++.+++.+++.+||||+|||+++++++.. ++++++||+|||+++||++
T Consensus 371 ar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~-----d~v~KvtIiPrG~alG~t~ 445 (596)
T COG0465 371 ARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDA-----DPVHKVTIIPRGRALGYTL 445 (596)
T ss_pred HHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCC-----cccceeeeccCchhhcchh
Confidence 99999999999999999999999999998999999999999999999999999987 8999999999999999999
Q ss_pred eecCccccccccCHHHHHHHHHHHhhHHHHHHHHhC-CCCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCcccc
Q 009263 335 FHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG-QDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKK 413 (539)
Q Consensus 335 ~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~~g-~~stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~~ 413 (539)
+.|. ++.++.+ +.+++++|+++||||||||++|| +.|||+++ |+++||.+|+.||++|||++++ |++.|...
T Consensus 446 ~~Pe-~d~~l~s-k~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~-D~~~at~~ar~mVt~~Gms~~l----G~v~~~~~ 518 (596)
T COG0465 446 FLPE-EDKYLMS-KEELLDRIDVLLGGRAAEELIFGYEITTGASN-DLEKATDLARAMVTEYGMSAKL----GPVAYEQV 518 (596)
T ss_pred cCCc-ccccccc-HHHHHHHHHHHhCCcHhhhhhhcccccccchh-hHHHHHHHHHHhhhhcCcchhh----Cceehhhc
Confidence 9986 4577776 99999999999999999999999 99999997 9999999999999999999999 99999876
Q ss_pred c-cccCCCcccCCCccCCCCCCCCCCCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHH
Q 009263 414 V-KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAW----RTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGRE 488 (539)
Q Consensus 414 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~~~ 488 (539)
. .|+|++. ....+|+++++ +|++++.++|++|+++|.+|++.++.++++|+++|||+++
T Consensus 519 ~~~flg~~~----------------~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~ 582 (596)
T COG0465 519 EGVFLGRYQ----------------KAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAE 582 (596)
T ss_pred ccccccccc----------------cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHH
Confidence 6 5766532 33456677655 5689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCC
Q 009263 489 EIDFILNNYPPQ 500 (539)
Q Consensus 489 ei~~il~~~~~~ 500 (539)
+|..|+...+.+
T Consensus 583 ~i~~i~~~~~~~ 594 (596)
T COG0465 583 EIKDILAGRKLP 594 (596)
T ss_pred HHHHHHhcccCC
Confidence 999999976543
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-87 Score=717.51 Aligned_cols=465 Identities=46% Similarity=0.725 Sum_probs=419.8
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
...++++|+||+|++++|++|.+++.++++|+.|..+|.++|+|+||+||||||||+||||+|+++++||+.+++++|.+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcC-CcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 98 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQG-IFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 98 ~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
+++|.+..+++++|..|+.++|||+||||||+++..+++ .... .+.+..+++|+||.+||++....+|+|+
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~--------~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGG--------GQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCC--------CChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 999999999999999999999999999999999998853 1212 6778899999999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 255 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~ 255 (539)
++||+++.||+||+||||||+.|.+++|+..+|.+|++.|+++.++. +++++..+|..|+||+|+||.++||+|+..|.
T Consensus 455 a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~ 534 (774)
T KOG0731|consen 455 AATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAA 534 (774)
T ss_pred eccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999985 77889999999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCCccccceee
Q 009263 256 RKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVF 335 (539)
Q Consensus 256 ~~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg~~lG~~~~ 335 (539)
|++...|+..||+.|++++..|...++..++.++++.+|+||+|||+++|++++. +++.++||+| |+++||+++
T Consensus 535 r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~-----dpl~kvsIiP-GqalG~a~~ 608 (774)
T KOG0731|consen 535 RKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHA-----DPLLKVSIIP-GQALGYAQY 608 (774)
T ss_pred HhccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhcccccc-----CcceeEEecc-CCccceEEE
Confidence 9999999999999999999999988899999999999999999999999998777 8999999999 779999999
Q ss_pred ecCccccccccCHHHHHHHHHHHhhHHHHHHHHhC-CCCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCccccc
Q 009263 336 HRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG-QDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV 414 (539)
Q Consensus 336 ~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~~g-~~stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~~~ 414 (539)
.|. +.++++ +.+|+++|||.||||||||++|| ++|||+++ ||++||.+|+.||+.|||+++. |++++....
T Consensus 609 ~P~--~~~l~s-k~ql~~rm~m~LGGRaAEev~fg~~iTtga~d-dl~kvT~~A~~~V~~~Gms~ki----g~~~~~~~~ 680 (774)
T KOG0731|consen 609 LPT--DDYLLS-KEQLFDRMVMALGGRAAEEVVFGSEITTGAQD-DLEKVTKIARAMVASFGMSEKI----GPISFQMLL 680 (774)
T ss_pred CCc--cccccc-HHHHHHHHHHHhCcchhhheecCCccCchhhc-cHHHHHHHHHHHHHHcCccccc----CceeccCcc
Confidence 886 446666 99999999999999999999997 68999987 9999999999999999999999 998873221
Q ss_pred cccCCCcccCCCccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHH
Q 009263 415 KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFIL 494 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~~~ei~~il 494 (539)
.|.. . ...+.....-+.++.++++|++.+|++|+++|++|++.++.||+.|+++|+|+++|+.+++
T Consensus 681 --~~~~-----------~-~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll 746 (774)
T KOG0731|consen 681 --PGDE-----------S-FRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALL 746 (774)
T ss_pred --cccc-----------c-ccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHh
Confidence 1110 0 0112333344556778899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccccccccCCCCCCcc
Q 009263 495 NNYPPQTPISRLLEEENPGTLPFI 518 (539)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~ 518 (539)
+.+|+..+..........+..|..
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~ 770 (774)
T KOG0731|consen 747 GERPPGMPEKNVIVEQKIGLEPEH 770 (774)
T ss_pred ccCCCcccccchhhhhcccccccc
Confidence 999988875555554444444443
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.5e-80 Score=674.02 Aligned_cols=446 Identities=42% Similarity=0.695 Sum_probs=401.4
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
....+.++|+||+|++++++++.+++.++++++.|..+|...|+|+||+||||||||++|+++|++++.||+++++++|.
T Consensus 174 ~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 174 MEADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred cccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
+.+.|.+...++.+|..|+...||||||||||.++.++.....+ .+.+..+++++||.++|++..+.+++||
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~--------~~~e~~~~L~~LL~~~dg~~~~~~ViVI 325 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG--------GNDEREQTLNQLLTEMDGFKGNKGVIVI 325 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC--------CcHHHHHHHHHHHhhhccccCCCCeeEE
Confidence 99999989999999999999999999999999998776543222 4456678999999999999888899999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~ 256 (539)
++||+++.+|++++|||||++.|.+++|+.++|.+||+.++.+..+..+.++..++..+.|||++||.++|++|+..|.+
T Consensus 326 aaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r 405 (638)
T CHL00176 326 AATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTAR 405 (638)
T ss_pred EecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCCccccceeee
Q 009263 257 KGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFH 336 (539)
Q Consensus 257 ~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg~~lG~~~~~ 336 (539)
++...|+.+||++|++++..|.+++. ..++.+++++||||+||||++++++.. +++++|||+|||+++|++++.
T Consensus 406 ~~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~-----~~v~kvtI~prg~~~G~~~~~ 479 (638)
T CHL00176 406 RKKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNH-----DPVQKVTLIPRGQAKGLTWFT 479 (638)
T ss_pred hCCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCC-----CceEEEEEeecCCCCCceEec
Confidence 99999999999999999999887654 456778999999999999999999876 789999999999999999998
Q ss_pred cCccccccccCHHHHHHHHHHHhhHHHHHHHHhCC--CCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCccccc
Q 009263 337 RLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ--DTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV 414 (539)
Q Consensus 337 ~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~~g~--~stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~~~ 414 (539)
|. ++.+.++ +.+++++|+++|||||||+++||+ +++|+++ ||++||++|+.||+.|||+. + ||+.|....
T Consensus 480 p~-~~~~~~t-~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~-Dl~~AT~iA~~mv~~~Gm~~-~----g~~~~~~~~ 551 (638)
T CHL00176 480 PE-EDQSLVS-RSQILARIVGALGGRAAEEVVFGSTEVTTGASN-DLQQVTNLARQMVTRFGMSS-I----GPISLESNN 551 (638)
T ss_pred CC-ccccccc-HHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchh-HHHHHHHHHHHHHHHhCCCc-C----CceeecCCC
Confidence 75 4555555 999999999999999999999994 6888876 99999999999999999995 7 898876432
Q ss_pred ---cccCCCcccCCCccCCCCCCCCCCCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCH
Q 009263 415 ---KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDD----IAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGR 487 (539)
Q Consensus 415 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~~ 487 (539)
.|+|+.+ .....++++ ++.+|+++|+++|++|+++|++||++|++||++|+++|||++
T Consensus 552 ~~~~~~~~~~---------------~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~ 616 (638)
T CHL00176 552 STDPFLGRFM---------------QRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDG 616 (638)
T ss_pred Cccccccccc---------------ccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCH
Confidence 4655432 122345544 556789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 009263 488 EEIDFILNNYPP 499 (539)
Q Consensus 488 ~ei~~il~~~~~ 499 (539)
+||++|++.++.
T Consensus 617 ~ei~~il~~~~~ 628 (638)
T CHL00176 617 DEFREIVNSYTI 628 (638)
T ss_pred HHHHHHHhhcCC
Confidence 999999987643
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.1e-78 Score=664.95 Aligned_cols=444 Identities=40% Similarity=0.682 Sum_probs=404.4
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
.....+|+|+.|.+..++++.+++.++..+..+..++...|+|++|+||||||||+++++++++++.||+.++++++...
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 45568899999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 99 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 99 ~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
+.+.+...++.+|..++...||||||||+|.++.++.....+ ...+...+++++|.+||++..+.+++||+|
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g--------~~~~~~~~ln~lL~~mdg~~~~~~vivIaa 296 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG--------GHDEREQTLNQMLVEMDGFEGNEGIIVIAA 296 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC--------CchHHHHHHHHHHHhhhcccCCCCeeEEEe
Confidence 999999999999999999999999999999999887653332 344567899999999999999999999999
Q ss_pred cCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 009263 179 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 258 (539)
Q Consensus 179 tn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~ 258 (539)
||+|+.+|++++|||||++.|.+++|+.++|.+||+.++.+.++..++++..+++.+.|||++||.++|++|+..|.+++
T Consensus 297 TN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~ 376 (644)
T PRK10733 297 TNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376 (644)
T ss_pred cCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCCccccceeeecC
Q 009263 259 HESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRL 338 (539)
Q Consensus 259 ~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg~~lG~~~~~~~ 338 (539)
+..|+..||..|++++..|+.++...+++.+++.+|+||+|||+++++++.. .++.+|||+|||+++|++++.|.
T Consensus 377 ~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~-----~~~~~v~i~prg~~~g~~~~~~~ 451 (644)
T PRK10733 377 KRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEH-----DPVHKVTIIPRGRALGVTFFLPE 451 (644)
T ss_pred CCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCC-----CceeEEEEeccCCCcceeEECCC
Confidence 9999999999999999999887777788889999999999999999999876 78999999999999999999775
Q ss_pred ccccccccCHHHHHHHHHHHhhHHHHHHHHhC--CCCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCccccc--
Q 009263 339 DDESYMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV-- 414 (539)
Q Consensus 339 ~~~~~~~~t~~~l~~~i~v~LaGraAEei~~g--~~stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~~~-- 414 (539)
++.+.. ||.+++++|+++|||||||+++|| ++|||+++ ||++||+||+.||+.||||+++ |++.|....
T Consensus 452 -~~~~~~-~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~-Dl~~AT~lA~~mv~~~Gms~~l----g~~~~~~~~~~ 524 (644)
T PRK10733 452 -GDAISA-SRQKLESQISTLYGGRLAEEIIYGPEHVSTGASN-DIKVATNLARNMVTQWGFSEKL----GPLLYAEEEGE 524 (644)
T ss_pred -cccccc-cHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHH-HHHHHHHHHHHHHHHhCCCccc----cchhhcccccc
Confidence 344444 599999999999999999999998 46788876 9999999999999999999999 999886544
Q ss_pred cccCCCcccCCCccCCCCCCCCCCCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHH
Q 009263 415 KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDI----AWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEI 490 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~~~ei 490 (539)
.|+|+.+ ...+.+|+++ +.+|+++|+++|++|+++|++||+.|++||++|+++|||+++||
T Consensus 525 ~~lg~~~---------------~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei 589 (644)
T PRK10733 525 VFLGRSV---------------AKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQI 589 (644)
T ss_pred ccccccc---------------ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHH
Confidence 5666543 2234566655 56789999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 009263 491 DFILNNY 497 (539)
Q Consensus 491 ~~il~~~ 497 (539)
++|+...
T Consensus 590 ~~i~~~~ 596 (644)
T PRK10733 590 DDLMARR 596 (644)
T ss_pred HHHHhcC
Confidence 9999875
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.9e-77 Score=643.51 Aligned_cols=446 Identities=45% Similarity=0.766 Sum_probs=402.1
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
++..+.++++|+||+|++++|+++.+++.++++++.|..+|..+|+|+||+||||||||++|+++|++++.||+.+++++
T Consensus 44 ~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred cccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
+.+.+.|.+...++.+|..|+...||||||||||.++.+++....+ ...+...++++||.+||++....+++
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~--------~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG--------GNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC--------ccHHHHHHHHHHHhhhccccCCCCeE
Confidence 9999999999999999999999999999999999999877543222 34455688999999999998888999
Q ss_pred EEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 009263 175 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 175 vIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A 254 (539)
||+|||+++.+|++++|||||++.|++++|+.++|.+||+.++.+.....+.++..++..+.|||++||.++|++|...|
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a 275 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLA 275 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888778889999999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCCcccccee
Q 009263 255 VRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLV 334 (539)
Q Consensus 255 ~~~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg~~lG~~~ 334 (539)
.+++...|+.+||..|++++..++......+++.+++++|+||+|||+++++++.. .++.++||.|||+++|+++
T Consensus 276 ~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~-----~~v~~vsi~prg~~~G~~~ 350 (495)
T TIGR01241 276 ARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDA-----DPVHKVTIIPRGQALGYTQ 350 (495)
T ss_pred HHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCC-----CceEEEEEeecCCccceEE
Confidence 99998999999999999999999877777788899999999999999999999765 6889999999999999998
Q ss_pred eecCccccccccCHHHHHHHHHHHhhHHHHHHHHhCCCCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCccccc
Q 009263 335 FHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV 414 (539)
Q Consensus 335 ~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~~g~~stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~~~ 414 (539)
+.+. ++.... |+.+++++|+|+|||||||+++||++|+|+++ ||++||++|+.||.+|||++++ |++++....
T Consensus 351 ~~~~-~~~~~~-t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~-Dl~~At~lA~~mv~~~Gm~~~~----g~~~~~~~~ 423 (495)
T TIGR01241 351 FLPE-EDKYLY-TKSQLLAQIAVLLGGRAAEEIIFGEVTTGASN-DIKQATNIARAMVTEWGMSDKL----GPVAYGSDG 423 (495)
T ss_pred ecCc-cccccC-CHHHHHHHHHHHhhHHHHHHHHhcCCCCCchH-HHHHHHHHHHHHHHHhCCCccc----CceeeccCc
Confidence 8764 334444 59999999999999999999999999999986 9999999999999999999988 888876543
Q ss_pred --cccCCCcccCCCccCCCCCCCCCCCCCCcH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHH
Q 009263 415 --KFVGPRLDFEGSLYDDYGLTEPPVNFNLDD----DIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGRE 488 (539)
Q Consensus 415 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~~~ 488 (539)
.++|+++ .....+++ .++.+|+++|+++|++|+++|++||+++++||++|+++|+|+++
T Consensus 424 ~~~~l~~~~---------------~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ 488 (495)
T TIGR01241 424 GDVFLGRGF---------------AKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITRE 488 (495)
T ss_pred ccccccccc---------------ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHH
Confidence 3444432 12234444 45567899999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 009263 489 EIDFILN 495 (539)
Q Consensus 489 ei~~il~ 495 (539)
||++|++
T Consensus 489 ei~~il~ 495 (495)
T TIGR01241 489 EIKELLA 495 (495)
T ss_pred HHHHHhC
Confidence 9999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-57 Score=437.65 Aligned_cols=258 Identities=44% Similarity=0.759 Sum_probs=247.9
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..|-+.+.|+++|+||.|+++.++++++++.. +++|+.|..+|+.||+|||||||||||||+||||+|++.+..|+.+.
T Consensus 138 ~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv 217 (406)
T COG1222 138 SVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV 217 (406)
T ss_pred heeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEec
Confidence 46677889999999999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
+++|+.+|.|.+..-+|++|..|+.++||||||||||+++.+|.....+ .+.+.+.++.+||.+||||.+..
T Consensus 218 gSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~--------gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 218 GSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTS--------GDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred cHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCC--------chHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999999999999999999999998654333 67788999999999999999999
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
+|-||+|||+++.|||||+||||||+.|+||+||.+.|.+||+.|.+++++..++|++.+++.+.|+||+||+++|.+|.
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAG 369 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAG 369 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhcCC
Q 009263 252 LVAVRKGHESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~~~g~ 278 (539)
+.|+|+.+..||++||..|++++....
T Consensus 370 m~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 370 MFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 999999999999999999999998644
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.7e-52 Score=474.35 Aligned_cols=308 Identities=19% Similarity=0.241 Sum_probs=259.0
Q ss_pred hhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHH-------------------------------
Q 009263 51 FDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL------------------------------- 99 (539)
Q Consensus 51 ~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~------------------------------- 99 (539)
...+|+.+|+||||+||||||||+||+|+|+++++||+.+++++|.+.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 3577899999999999999999999999999999999999999998643
Q ss_pred ----------hhh--hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC
Q 009263 100 ----------VGV--GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 167 (539)
Q Consensus 100 ----------~g~--~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 167 (539)
++. ...+++.+|+.|++++||||||||||+++.+.. ...++++|+.+|++.
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-----------------~~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-----------------NYLSLGLLVNSLSRD 1764 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-----------------ceehHHHHHHHhccc
Confidence 112 233488999999999999999999999986521 123578899999976
Q ss_pred C---CCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHh--ccCCCCC-CCCHHHHHhhCCCCCHH
Q 009263 168 D---TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA--SKVKMSD-SVDLSSYAKNLPGWTGA 241 (539)
Q Consensus 168 ~---~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l--~~~~~~~-~~~~~~la~~t~g~s~~ 241 (539)
. ...+|+||||||+|+.|||||+||||||+.|+++.|+..+|++++...+ ++..+.. .+++..+|+.|.|||||
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 3 4568999999999999999999999999999999999999999887543 3444443 35799999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhccccccccccee
Q 009263 242 RLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRI 321 (539)
Q Consensus 242 dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~v 321 (539)
||.++|++|+..|+++++..|+.+++..|++++.+|.+..... . ..+.+++||+||||+++++... +++++|
T Consensus 1845 DLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~~--~-~~~~ia~yEiGhAvvq~~L~~~-----~pv~kI 1916 (2281)
T CHL00206 1845 DLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRS--V-QDHGILFYQIGRAVAQNVLLSN-----CPIDPI 1916 (2281)
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcccC--c-chhhhhhhHHhHHHHHHhccCC-----CCcceE
Confidence 9999999999999999999999999999999999998754322 2 2345799999999999999876 899999
Q ss_pred EEeeC------CccccceeeecCccccccccCHHHHHHHHHHHhhHHHHHHHHhCCCCCCCCchhHHHHHHHHHHHHHHh
Q 009263 322 SIVPR------GQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIW 395 (539)
Q Consensus 322 tI~pr------g~~lG~~~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~~g~~stg~~~~Dl~~At~~A~~~v~~~ 395 (539)
||.++ |.++|++|+.+. + ...+ +.+++.+|.+||||||||++||+..+ .|+.||+.|
T Consensus 1917 SIy~~~~~~r~~~~yl~~wyle~--~-~~mk-k~tiL~~Il~cLAGraAedlwf~~~~-------------~~~n~It~y 1979 (2281)
T CHL00206 1917 SIYMKKKSCKEGDSYLYKWYFEL--G-TSMK-KLTILLYLLSCSAGSVAQDLWSLPGP-------------DEKNGITSY 1979 (2281)
T ss_pred EEecCCccccCcccceeEeecCC--c-ccCC-HHHHHHHHHHHhhhhhhhhhccCcch-------------hhhcCcccc
Confidence 99532 467799998875 2 4444 99999999999999999999996553 366777777
Q ss_pred CCCcc
Q 009263 396 NLENP 400 (539)
Q Consensus 396 Gm~~~ 400 (539)
||.+.
T Consensus 1980 g~vEn 1984 (2281)
T CHL00206 1980 GLVEN 1984 (2281)
T ss_pred cchhh
Confidence 77775
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-49 Score=408.95 Aligned_cols=248 Identities=44% Similarity=0.744 Sum_probs=235.0
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
-+-++++|+||.|++++|.+|++.+.| +++|+.|.++|+.+|+|||||||||||||++|||+|++++.+|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 456899999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
++|+|.+++.++++|.+|+..+|||||+||||++...|++..+ .-..+++++||++|||+....+|+||
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-----------~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-----------GVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-----------chHHHHHHHHHHHcccccccCcEEEE
Confidence 9999999999999999999999999999999999999864322 33468899999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~ 256 (539)
|+||+|+.||+|++||||||+.|+||+||.+.|.+||+.++++.++.+++|++.|+..|.||||+||.++|++|+..|.+
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALR 654 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC--CCCCchhhHHHHHHHHhc
Q 009263 257 KG--HESILSSDMDDAVDRLTV 276 (539)
Q Consensus 257 ~~--~~~I~~~d~~~a~~~~~~ 276 (539)
+. ...|+..||++|+..+..
T Consensus 655 e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 655 ESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred HhcccccccHHHHHHHHHhhcc
Confidence 86 457999999999987643
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-47 Score=389.91 Aligned_cols=246 Identities=43% Similarity=0.730 Sum_probs=228.8
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
-|+++|+||.|+++++.+|...+.+ +++|+.|+.+|+..|.|||||||||||||.||||+|++.+.+|+.+.+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 4899999999999999999987776 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 99 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 99 ~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
|+|+++..+|.+|..|+..+|||||+||+|+|.++|+.. .......++|+||.+|||+..+.+|.||++
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~-----------~s~~s~RvvNqLLtElDGl~~R~gV~viaA 653 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE-----------GSSVSSRVVNQLLTELDGLEERRGVYVIAA 653 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC-----------CchhHHHHHHHHHHHhcccccccceEEEee
Confidence 999999999999999999999999999999999998653 233446889999999999999999999999
Q ss_pred cCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhc--cCCCCCCCCHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 009263 179 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS--KVKMSDSVDLSSYAKNLP--GWTGARLAQLVQEAALVA 254 (539)
Q Consensus 179 tn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~--~~~~~~~~~~~~la~~t~--g~s~~dl~~lv~~A~~~A 254 (539)
||+|+.+|||++||||||+.+++++|+.++|..||+.+.+ +..++.++|++.+++.+. ||||+||..+|++|...|
T Consensus 654 TNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~A 733 (802)
T KOG0733|consen 654 TNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILA 733 (802)
T ss_pred cCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 788899999999999877 999999999999999999
Q ss_pred HHhCC----------------CCCchhhHHHHHHHHhc
Q 009263 255 VRKGH----------------ESILSSDMDDAVDRLTV 276 (539)
Q Consensus 255 ~~~~~----------------~~I~~~d~~~a~~~~~~ 276 (539)
+++.- ..++..||++|+.++..
T Consensus 734 L~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 734 LRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred HHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 87621 13566799999998754
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-45 Score=337.88 Aligned_cols=252 Identities=41% Similarity=0.690 Sum_probs=239.3
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
..+.|++++.||.|++-.|+++++.+.. +.+.+.|+++|+.||+|+|+|||||||||+||+|+|++....|+.+.+++|
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 4567899999999999999999999996 899999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEE
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 175 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viv 175 (539)
..+|.|.+..-++++|..|+.++|+|+||||||++..++-....+ .+.+.+..+-+||..||||....++-|
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtg--------adrevqril~ellnqmdgfdq~~nvkv 297 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTG--------ADREVQRILIELLNQMDGFDQTTNVKV 297 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccc--------ccHHHHHHHHHHHHhccCcCcccceEE
Confidence 999999999999999999999999999999999999987543333 567788999999999999999999999
Q ss_pred EEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 009263 176 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 255 (539)
Q Consensus 176 Iaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~ 255 (539)
|.+||+.+.+||+|+||||+|+.|+||+||..+++-+|.....++.+.+++|++.+..+-+..|++||..+|++|.+.|.
T Consensus 298 imatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~av 377 (408)
T KOG0727|consen 298 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAV 377 (408)
T ss_pred EEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHHHHhc
Q 009263 256 RKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 256 ~~~~~~I~~~d~~~a~~~~~~ 276 (539)
|.++-.|...||++|......
T Consensus 378 r~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 378 RENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred HhcceeeeHHHHHHHHHhhcC
Confidence 999999999999999987653
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-45 Score=336.39 Aligned_cols=257 Identities=39% Similarity=0.690 Sum_probs=246.6
Q ss_pred chhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 12 YFAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
...|++++-|+.+++-|.|++..++++++++.. .++|+.|..+|+..|+|+|||||||||||.||+++|.+..+.|+.+
T Consensus 133 VsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firv 212 (404)
T KOG0728|consen 133 VSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 212 (404)
T ss_pred hHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEe
Confidence 367889999999999999999999999999996 9999999999999999999999999999999999999999999999
Q ss_pred eCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 009263 91 AGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 170 (539)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 170 (539)
+++++..+|.|.+..-++++|-.|+.++|+|+|.||||+++..+..+..+ .+++.+.++.+||..+|+|...
T Consensus 213 sgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g--------gdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 213 SGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG--------GDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC--------ccHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999988665444 5677889999999999999999
Q ss_pred CcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 009263 171 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEA 250 (539)
Q Consensus 171 ~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A 250 (539)
.++-||.+||+.+.|||+|+||||+|+.|+||+|+.+.|.+|++.|-++.++...+++..+|....|.||+++..+|.+|
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 251 ALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 251 ~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
..+|.|+.+-.+|++||+-|+.++..
T Consensus 365 gm~alrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 365 GMYALRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred hHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-45 Score=371.89 Aligned_cols=228 Identities=44% Similarity=0.789 Sum_probs=216.3
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
..++++|.||.|++....+|.+++..+++|+.|..+|+.||+|+|||||||||||+||+|+|+++++||+.+++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCC----CcEE
Q 009263 99 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG----KGVI 174 (539)
Q Consensus 99 ~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~----~~vi 174 (539)
+.|.++++++++|+.|+..+||||||||||++.++|... ..+.....+.+||..||++... .+|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a-----------qreMErRiVaQLlt~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA-----------QREMERRIVAQLLTSMDELSNEKTKGDPVL 331 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH-----------HHHHHHHHHHHHHHhhhcccccccCCCCeE
Confidence 999999999999999999999999999999999998753 3444567899999999988544 6799
Q ss_pred EEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 009263 175 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 175 vIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A 254 (539)
||++||+|+.|||+|+|+||||+.|.+..|+..+|.+||+..++++.+..++|+..||..|+||.|+||..+|.+|+..|
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVA 411 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh
Q 009263 255 VRK 257 (539)
Q Consensus 255 ~~~ 257 (539)
++|
T Consensus 412 ikR 414 (802)
T KOG0733|consen 412 IKR 414 (802)
T ss_pred HHH
Confidence 876
No 14
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-45 Score=342.68 Aligned_cols=255 Identities=36% Similarity=0.663 Sum_probs=242.2
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
-.++.|.-+|+||.|++..++++.+.+.. +.+|+.|..+|++||+|++|||+||||||.||+|+|+.....|+.+.+++
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence 35677889999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
++..|.|.+.+-+|++|..|..++|+|+||||||+++.+|-....+ ...+.++++.+||..+|+|.++..|-
T Consensus 255 LiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sg--------gerEiQrtmLELLNQldGFdsrgDvK 326 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG--------GEREIQRTMLELLNQLDGFDSRGDVK 326 (440)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCc--------cHHHHHHHHHHHHHhccCccccCCeE
Confidence 9999999999999999999999999999999999999998654333 56778889999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 009263 175 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 175 vIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A 254 (539)
||.+||+.+.|||+|+||||+|+.|+||.||...++.||..|..++.+..+++++.+...-..+||+||.++|.+|.+.|
T Consensus 327 vimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllA 406 (440)
T KOG0726|consen 327 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLA 406 (440)
T ss_pred EEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHHHHhcCC
Q 009263 255 VRKGHESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 255 ~~~~~~~I~~~d~~~a~~~~~~g~ 278 (539)
.|..+..++.+||..|.+++.+..
T Consensus 407 lRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 407 LRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhc
Confidence 999999999999999999998743
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-44 Score=335.77 Aligned_cols=258 Identities=41% Similarity=0.662 Sum_probs=243.7
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
|.+++.|+++++||.|+.+.++.|++++.. +.+|+.|-.+|+.||+|+|+|||||||||.+|+|+|++.+..|+.+-++
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 557888999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcE
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 173 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 173 (539)
++..+|+|.++.-++++|+.|+....||||+||||++++.+-....+ .+.+.+.++.+++.++|+|.++.++
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~g--------gdnevqrtmleli~qldgfdprgni 317 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAG--------GDNEVQRTMLELINQLDGFDPRGNI 317 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCC--------CcHHHHHHHHHHHHhccCCCCCCCe
Confidence 99999999999999999999999999999999999999887443222 4567788999999999999999999
Q ss_pred EEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 009263 174 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 253 (539)
Q Consensus 174 ivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~ 253 (539)
-|+.+||+|+.|||+|+||||+|+.++|.+||.+.|..||+.|.+.+.+..++-++-+++.++..+|++|+.+|.+|...
T Consensus 318 kvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmf 397 (435)
T KOG0729|consen 318 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMF 397 (435)
T ss_pred EEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCchhhHHHHHHHHhcCCCc
Q 009263 254 AVRKGHESILSSDMDDAVDRLTVGPKR 280 (539)
Q Consensus 254 A~~~~~~~I~~~d~~~a~~~~~~g~~~ 280 (539)
|++..+...|..||.+|++++..|..+
T Consensus 398 airarrk~atekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 398 AIRARRKVATEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 999988999999999999999887654
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-44 Score=331.63 Aligned_cols=256 Identities=39% Similarity=0.684 Sum_probs=241.6
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..|.+.+.|.-+++||.|+++.+++|.+.+-. +.+++.|..+|+.||+|+|+|||||||||++|+|.|...+..|+.+.
T Consensus 158 kaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA 237 (424)
T KOG0652|consen 158 KAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA 237 (424)
T ss_pred ceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhc
Confidence 45667788999999999999999999987764 99999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
+..+..+|.|.+++-++..|..|+..+|+||||||+|+++.+|-.+... .+.+.+.++.+||..+|||.+..
T Consensus 238 gPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~--------GDREVQRTMLELLNQLDGFss~~ 309 (424)
T KOG0652|consen 238 GPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKA--------GDREVQRTMLELLNQLDGFSSDD 309 (424)
T ss_pred chHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccccc--------ccHHHHHHHHHHHHhhcCCCCcc
Confidence 9999999999999999999999999999999999999999988543222 66778899999999999999999
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
.|-||++||+.+.|||+|+|+||+|+.|+||.|+.+.|.+|+..|.+++...++++++++++.|++|+|++...+|-+|.
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 252 LVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
..|.|++...|+.+||.+++..+..
T Consensus 390 MiALRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 390 MIALRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred HHHHhcccccccHHHHHHHHHHHHH
Confidence 9999999999999999999987764
No 17
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.3e-43 Score=328.66 Aligned_cols=243 Identities=36% Similarity=0.622 Sum_probs=225.4
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
....++++|+||+|++++|...+-++.++++|+.|..| .|+++|+|||||||||++|+|+|+++++|++.+...+++
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 44568899999999999999999999999999998776 589999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
..++|.+..+++++|..|+..+|||+||||+|+++-.|. |..........+|.||++||++..+.+|+.|
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRr----------yQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRR----------YQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhh----------HHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 999999999999999999999999999999999986552 1112333457899999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHH-HHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLA-QLVQEAALVAV 255 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~-~lv~~A~~~A~ 255 (539)
++||+|+.||+++++ ||...|+|.+|+.++|..|++.++++.++..+.++..++..|.|+|++||. .+++.|...|+
T Consensus 259 aaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai 336 (368)
T COG1223 259 AATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAI 336 (368)
T ss_pred eecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999997 67799999999
Q ss_pred HhCCCCCchhhHHHHHHHH
Q 009263 256 RKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 256 ~~~~~~I~~~d~~~a~~~~ 274 (539)
..+++.|+.+|++.|+.+.
T Consensus 337 ~ed~e~v~~edie~al~k~ 355 (368)
T COG1223 337 AEDREKVEREDIEKALKKE 355 (368)
T ss_pred HhchhhhhHHHHHHHHHhh
Confidence 9999999999999999873
No 18
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=339.29 Aligned_cols=247 Identities=35% Similarity=0.587 Sum_probs=223.6
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
-+..|+++|+||+|++++|+-|++.+-. +..|+.|+.+ .+|.+|+|++||||||||+||||+|.+++..|+.++.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 4678999999999999999999998875 8889887653 5788999999999999999999999999999999999999
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCC----C
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG----K 171 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~----~ 171 (539)
.++|.|.+++-+|-+|+.|+.++|++|||||||+|+.+|++.. .++....+-++||.+|||.... .
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~----------EHEaSRRvKsELLvQmDG~~~t~e~~k 351 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS----------EHEASRRVKSELLVQMDGVQGTLENSK 351 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc----------chhHHHHHHHHHHHHhhccccccccce
Confidence 9999999999999999999999999999999999999987531 4566678889999999997442 3
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
-|+|+|+||.||+||+||+| ||.+.|++|+|+.++|..+++..+......++++++.++..+.||||+||.++|++|.
T Consensus 352 ~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAs 429 (491)
T KOG0738|consen 352 VVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREAS 429 (491)
T ss_pred eEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHH
Confidence 38999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC-----------------CCCchhhHHHHHHHHhc
Q 009263 252 LVAVRKGH-----------------ESILSSDMDDAVDRLTV 276 (539)
Q Consensus 252 ~~A~~~~~-----------------~~I~~~d~~~a~~~~~~ 276 (539)
+++.||.- ..|+..||++|+.++..
T Consensus 430 m~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 430 MMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 99988621 34778888888887643
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=350.26 Aligned_cols=256 Identities=41% Similarity=0.673 Sum_probs=236.0
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHH-HhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVR-YLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
.|...+.|+++|+||+|++.+|+++++.+. .+.+++.|..+|+.+|+|+||+||||||||++|+++|++++.+|+.+.+
T Consensus 133 ~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 133 LLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred hhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 344567899999999999999999999988 4899999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCc
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 172 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 172 (539)
+++...|.|.+...++.+|..|+...||||||||+|.++.++.....+ ...+....+.+++..++++....+
T Consensus 213 s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~--------~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 213 SEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG--------ADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCC--------ccHHHHHHHHHHHHHhhccCCCCC
Confidence 999999999999999999999999999999999999998776432211 234456788999999999988889
Q ss_pred EEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 009263 173 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAAL 252 (539)
Q Consensus 173 vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~ 252 (539)
++||++||+++.+|++++|||||++.|+|++|+.++|..||+.++.+..+..++++..++..+.|||++||.++|++|..
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~ 364 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGM 364 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 253 VAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 253 ~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
.|.+++...|+.+||.+|+.++..+
T Consensus 365 ~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 365 QAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHcCCCccCHHHHHHHHHHHHhc
Confidence 9999999999999999999998654
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-41 Score=355.25 Aligned_cols=250 Identities=38% Similarity=0.652 Sum_probs=223.4
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
-.+-|+++|+||.|++++|.++.+-++. +++|+.|.+ |+++..|||||||||||||.+|||+|.++...|+++.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 4557999999999999999999999986 999998754 78888999999999999999999999999999999999999
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC--CCCcE
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--TGKGV 173 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~--~~~~v 173 (539)
.++|+|++++++|++|++|+..+|||||+||+|.+.++|+... + ...-..+++.+||.+||++. +..+|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG-D--------SGGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG-D--------SGGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC-C--------ccccHHHHHHHHHHHhhcccCCCCCce
Confidence 9999999999999999999999999999999999999885421 1 12223567899999999997 56789
Q ss_pred EEEEecCCCCcCCccccCCCccceeeecCCCCH-HHHHHHHHHHhccCCCCCCCCHHHHHhhCC-CCCHHHHHHHHHHHH
Q 009263 174 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNA-KGRTEILKIHASKVKMSDSVDLSSYAKNLP-GWTGARLAQLVQEAA 251 (539)
Q Consensus 174 ivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~-~er~~il~~~l~~~~~~~~~~~~~la~~t~-g~s~~dl~~lv~~A~ 251 (539)
+||+|||+|+.|||+|+||||||+-+++.+++. +.+..+|+...++.++++++|+.++|+.++ .|||+|+-.+|..|.
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~ 892 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAM 892 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHH
Confidence 999999999999999999999999999998854 557889999999999999999999999875 699999999999999
Q ss_pred HHHHHhCC-----------------CCCchhhHHHHHHHHhc
Q 009263 252 LVAVRKGH-----------------ESILSSDMDDAVDRLTV 276 (539)
Q Consensus 252 ~~A~~~~~-----------------~~I~~~d~~~a~~~~~~ 276 (539)
..|++|.- -.|+++||.++.++...
T Consensus 893 l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 893 LAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 99987721 14788999999988754
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=9.3e-40 Score=340.14 Aligned_cols=259 Identities=45% Similarity=0.749 Sum_probs=237.3
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
.+...+.|+++|+||+|++++++++.+.+.. +.+++.|+.+|+.+|+|+|||||||||||++|+++|++++.+|+.+++
T Consensus 119 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 119 AMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred eeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 4556677899999999999999999999875 999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCc
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 172 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 172 (539)
+++...|.|.+...++.+|..+....||||||||+|.++.++.+.... ...+....+..++..++++....+
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~--------~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTS--------GDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCC--------ccHHHHHHHHHHHHhccccCCCCC
Confidence 999999999999999999999999999999999999998776542211 234456778899999999888889
Q ss_pred EEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 009263 173 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAAL 252 (539)
Q Consensus 173 vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~ 252 (539)
++||+|||+++.+|++++|||||++.|+|++|+.++|.+||+.++.+..+..++++..++..|.||+++||.++|++|..
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~ 350 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGM 350 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHHHHhcCCCc
Q 009263 253 VAVRKGHESILSSDMDDAVDRLTVGPKR 280 (539)
Q Consensus 253 ~A~~~~~~~I~~~d~~~a~~~~~~g~~~ 280 (539)
.|.+++...|+.+||.+|++++......
T Consensus 351 ~a~~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 351 FAIRDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhccccc
Confidence 9999999999999999999998765443
No 22
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=7.1e-41 Score=319.87 Aligned_cols=204 Identities=29% Similarity=0.466 Sum_probs=166.5
Q ss_pred chhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCCccccceeeecCcccc
Q 009263 263 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDES 342 (539)
Q Consensus 263 ~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg~~lG~~~~~~~~~~~ 342 (539)
|++||++|++++..|+++++..+++.+++++|+||+||||++++++.. .++.++||+|||.++|++.+.+. ++.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~-----~~v~~vsi~prg~~~G~~~~~~~-~~~ 74 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPA-----DPVSKVSIVPRGSALGFTQFTPD-EDR 74 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS--------EEEEESSTTCCCCHCCEECHH-TT-
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhccc-----ccEEEEEEecCCCcceeEEeccc-hhc
Confidence 578999999999999998778899999999999999999999999865 68899999999999999999775 333
Q ss_pred ccccCHHHHHHHHHHHhhHHHHHHHHhC--CCCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCccccc---ccc
Q 009263 343 YMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV---KFV 417 (539)
Q Consensus 343 ~~~~t~~~l~~~i~v~LaGraAEei~~g--~~stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~~~---~~~ 417 (539)
+.. ||.+++++|+|+|||||||+++|| ++|+|+++ ||++||.+|++||.+|||++++ |++++.... .|+
T Consensus 75 ~~~-t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~-DL~~At~iA~~mv~~~Gm~~~~----g~~~~~~~~~~~~~~ 148 (213)
T PF01434_consen 75 YIR-TRSYLEDRICVLLAGRAAEELFFGEDNVSTGASS-DLQQATEIARKMVASYGMGDSL----GLLSYSPNDDDEVFL 148 (213)
T ss_dssp SS--BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHH-HHHHHHHHHHHHHHTST-TTTT----TSS-SEEEE-S-SSS
T ss_pred ccc-cHHHHHhhHHHHHHHHHHHHhhcCcceecccchh-HHHHHHHHHHHHHHHhCCCCCC----ceeeeeccccccccc
Confidence 344 599999999999999999999999 78888876 9999999999999999999988 888876644 233
Q ss_pred CCCcccCCCccCCCCCCCCCCCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 009263 418 GPRLDFEGSLYDDYGLTEPPVNFNLD----DDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFI 493 (539)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~~~ei~~i 493 (539)
+..+ .....++ +.++++|+++|+++|++|+++|++||++|++||++|+++++|+++||++|
T Consensus 149 ~~~~---------------~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 149 GREW---------------NSRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp -E------------------EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred cccc---------------cccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 3221 1112334 44567889999999999999999999999999999999999999999986
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=7.7e-40 Score=340.83 Aligned_cols=257 Identities=39% Similarity=0.690 Sum_probs=236.1
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..|...+.|+++|+||.|++..++++.+.+.. +.+++.|..+|+.+|+|+|||||||||||++|+++|++++.+|+.+.
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 34556778889999999999999999999985 99999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
++++...|.|.+...++.+|..|....||||||||||.++.++.....+ ...+...++..+|..++++....
T Consensus 250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sg--------g~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSG--------GEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCc--------ccHHHHHHHHHHHHHHhhhcccC
Confidence 9999999999999999999999999999999999999998776432211 23445677889999999998888
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
++.||+|||+++.+|++++|||||++.|+|++|+.++|.+||+.++.+..+..++++..++..+.|||++||.++|++|.
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~ 401 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAG 401 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 252 LVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
..|.++++..|+.+||..|++++...
T Consensus 402 ~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 402 LLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 99999999999999999999998654
No 24
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=308.17 Aligned_cols=228 Identities=36% Similarity=0.616 Sum_probs=205.5
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
..+.|+++|+||+|++.+|+.|++.+.. ++.|+.|.. +-.|.+||||||||||||++||+|+|.+++..|++++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 4567999999999999999999998774 888988754 24578999999999999999999999999999999999999
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCcEE
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-TGKGVI 174 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~vi 174 (539)
.++|+|.+++-++.+|+.|+.+.|+||||||||.+++.++.. .++...+.-.+||.+|.+.. .+.+|+
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en-----------EseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN-----------ESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC-----------chHHHHHHHHHHHHhhhccccCCCceE
Confidence 999999999999999999999999999999999999988653 33445667789999999984 456899
Q ss_pred EEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 009263 175 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALV 253 (539)
Q Consensus 175 vIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~A~~~ 253 (539)
|+++||.||.||.+++| ||++.|++|+|+...|..+|+.++...... .+.|+..|+++|.||||+||.-+|+.|.+.
T Consensus 272 VLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalme 349 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALME 349 (439)
T ss_pred EEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhh
Confidence 99999999999999999 999999999999999999999999886654 456899999999999999999999999998
Q ss_pred HHHhC
Q 009263 254 AVRKG 258 (539)
Q Consensus 254 A~~~~ 258 (539)
..|+-
T Consensus 350 PvRkv 354 (439)
T KOG0739|consen 350 PVRKV 354 (439)
T ss_pred hHHHh
Confidence 88763
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-38 Score=327.38 Aligned_cols=227 Identities=41% Similarity=0.703 Sum_probs=214.9
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
.++++|+||.|+.++|+.|.+++.+ -+.|..|.+..++.+.|||||||||||||+||.++|..++..|+.+.+.++.++
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 4559999999999999999999997 889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 99 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 99 ~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
|.|.+++.+|.+|..|+...|||||+||+|.+.++|+....+. ..+++|+||++|||.+.-.+|.|+|+
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV-----------TDRVVNQlLTelDG~Egl~GV~i~aa 809 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV-----------TDRVVNQLLTELDGAEGLDGVYILAA 809 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc-----------hHHHHHHHHHhhccccccceEEEEEe
Confidence 9999999999999999999999999999999999997653332 35789999999999999999999999
Q ss_pred cCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 009263 179 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 179 tn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
|.+|+.+||||+||||+|+.++.+.|+..+|.+|+...........++|++-+|..|+||||+||..++-.|.+.|..+
T Consensus 810 TsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 810 TSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999899999999999999999999999999999999888754
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-37 Score=349.94 Aligned_cols=247 Identities=44% Similarity=0.765 Sum_probs=227.2
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
.+.++|+||+|++.+|+.|.+.+.+ +++++.+..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.+.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4688999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 99 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 99 ~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
|+|.++..++.+|..|+...||||||||||.+...++... ........+++||.+|+++....+++||+|
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~----------~~~~~~~~~~~lL~~ldg~~~~~~v~vI~a 596 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF----------DTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC----------CccHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 9999999999999999999999999999999998775322 122345788999999999988889999999
Q ss_pred cCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 009263 179 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 258 (539)
Q Consensus 179 tn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~ 258 (539)
||+|+.+|++++|||||++.|++|+|+.++|.+||+.+.++..+..++++..++..|.|||++||.++|++|...|+++.
T Consensus 597 Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~ 676 (733)
T TIGR01243 597 TNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRES 676 (733)
T ss_pred CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999998742
Q ss_pred ------------------CCCCchhhHHHHHHHHhc
Q 009263 259 ------------------HESILSSDMDDAVDRLTV 276 (539)
Q Consensus 259 ------------------~~~I~~~d~~~a~~~~~~ 276 (539)
...|+.+||.+|+.++..
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 677 IGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred hhhccchhhhcccccccccCcccHHHHHHHHHHcCC
Confidence 126899999999987644
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.6e-37 Score=319.43 Aligned_cols=254 Identities=46% Similarity=0.764 Sum_probs=232.1
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..+...+.|.++|+||.|++++++++.+.+.. +.+++.|..+|+.+|+|+||+||||||||++|+++|++++.+|+.+.
T Consensus 109 ~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 109 KGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred ccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 35556678999999999999999999999875 89999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
+.++...+.|.....++.+|..++...|+||||||+|.++.++.....+ ...+....+.+++..++++....
T Consensus 189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~--------~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS--------GDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC--------ccHHHHHHHHHHHHHhhCCCCCC
Confidence 9999999999988899999999999999999999999998766432211 23445677889999999887778
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
++.||+|||+++.+|++++|||||++.|+|+.|+.++|.+||+.++.+..+..++++..++..+.||+++||.++|++|.
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHH
Q 009263 252 LVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
..|.++++..|+.+||..|++++
T Consensus 341 ~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 341 MFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHhCCCccCHHHHHHHHHHh
Confidence 99999999999999999999875
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=334.89 Aligned_cols=247 Identities=47% Similarity=0.741 Sum_probs=229.4
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
...+.++|+|+.|++.+|+.+.+.+.+ ++.++.|...+.++++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 356889999999999999999999997 8899999988999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
++|+|.++++++.+|..|+..+||||||||+|++...++... .......+++++.++++.....+|+||
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-----------~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-----------DGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-----------chHHHHHHHHHHHHhcCCCccCceEEE
Confidence 999999999999999999999999999999999998886432 112257899999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCC--CCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK--MSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~--~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A 254 (539)
++||+|+.+|++++|||||++.|+||+||.++|.+||+.++.... +..++++..++..+.|||++||..+|++|...+
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~ 462 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEA 462 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999544 357889999999999999999999999999999
Q ss_pred HHhC-CCCCchhhHHHHHHHHh
Q 009263 255 VRKG-HESILSSDMDDAVDRLT 275 (539)
Q Consensus 255 ~~~~-~~~I~~~d~~~a~~~~~ 275 (539)
.++. ...|+.+||..|+.++.
T Consensus 463 ~~~~~~~~~~~~~~~~a~~~~~ 484 (494)
T COG0464 463 LREARRREVTLDDFLDALKKIK 484 (494)
T ss_pred HHHhccCCccHHHHHHHHHhcC
Confidence 9988 77899999999999843
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.1e-37 Score=325.91 Aligned_cols=245 Identities=27% Similarity=0.406 Sum_probs=212.9
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
.-..++.+|+||.|++.+|+.|.+....+ +.....+|+.+|+|+||+||||||||++|+++|++++.|++.++++.+.
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~ 296 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF 296 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc
Confidence 33357789999999999999998765433 2344567899999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
+.++|.++.+++.+|..|+..+||||||||||.++..+.... .......+++.++..++. ...+++||
T Consensus 297 ~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~----------d~~~~~rvl~~lL~~l~~--~~~~V~vI 364 (489)
T CHL00195 297 GGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG----------DSGTTNRVLATFITWLSE--KKSPVFVV 364 (489)
T ss_pred ccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC----------CchHHHHHHHHHHHHHhc--CCCceEEE
Confidence 999999999999999999999999999999999876543211 222345678888888874 45679999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC--CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS--DSVDLSSYAKNLPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~--~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A 254 (539)
+|||+++.+|++++|+||||+.|++++|+.++|.+||+.++.+.... .+.++..++..|.||||+||+++|++|...|
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A 444 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIA 444 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886533 4788999999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHHHHhc
Q 009263 255 VRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 255 ~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
..++ ..++.+||..|+.++.+
T Consensus 445 ~~~~-~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 445 FYEK-REFTTDDILLALKQFIP 465 (489)
T ss_pred HHcC-CCcCHHHHHHHHHhcCC
Confidence 8776 56999999999988764
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-38 Score=306.65 Aligned_cols=229 Identities=38% Similarity=0.635 Sum_probs=209.6
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcC-CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
.....-.++|+||.|++++++.|++.+.. ++.|+.|..-+ .++++||||+||||||||++|+|+|++++.+|+.++++
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 34556789999999999999999998885 99999885322 57999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCc-
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG- 172 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~- 172 (539)
.+.++|.|.+.+.++.+|..|.+..||||||||+|.+.+.|+.. .++.....-++|....||+.++.+
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~-----------dHEa~a~mK~eFM~~WDGl~s~~~~ 230 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST-----------DHEATAMMKNEFMALWDGLSSKDSE 230 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc-----------hHHHHHHHHHHHHHHhccccCCCCc
Confidence 99999999999999999999999999999999999999887421 445556677899999999977665
Q ss_pred -EEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 173 -VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 173 -vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
|+|++|||+|.++|.|++| |+...++++.|+..+|.+|++..+++.++.+++|+..+|..|.||||.||.++|+.|+
T Consensus 231 rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 231 RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAA 308 (386)
T ss_pred eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 009263 252 LVAVRK 257 (539)
Q Consensus 252 ~~A~~~ 257 (539)
...++.
T Consensus 309 ~~~ire 314 (386)
T KOG0737|consen 309 LRPIRE 314 (386)
T ss_pred HhHHHH
Confidence 888765
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=303.75 Aligned_cols=264 Identities=39% Similarity=0.642 Sum_probs=244.1
Q ss_pred cccccccchhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 5 IKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++......++|..+...+++|+++.|.-.+..++++.+.. +.+|..+..+|+++|++++||||||||||++|+++|..+
T Consensus 111 lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 111 LPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred cchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc
Confidence 3334445577888888999999999999999999998885 999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH
Q 009263 84 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 163 (539)
Q Consensus 84 ~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 163 (539)
++.|+.++.+.+.+.+.|++..-+|+.|..|+...|||||+||||++++++.+. ....+.+.+.++-.|+.+
T Consensus 191 g~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se--------~Ts~dreiqrTLMeLlnq 262 (388)
T KOG0651|consen 191 GVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSE--------GTSSDREIQRTLMELLNQ 262 (388)
T ss_pred CCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecc--------ccchhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887321 122677888999999999
Q ss_pred hcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHH
Q 009263 164 LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARL 243 (539)
Q Consensus 164 ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl 243 (539)
|+++.....|-+|.|||+|+.|||+|+||||+++.+++|+|+...|..|++.+.+.+.....+|.+.+.+..+||+++|+
T Consensus 263 mdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~ 342 (388)
T KOG0651|consen 263 MDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADL 342 (388)
T ss_pred hccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 244 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 244 ~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
++.|.+|...|.+..+..+..+++..++.++..
T Consensus 343 rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 343 RNVCTEAGMFAIPEERDEVLHEDFMKLVRKQAD 375 (388)
T ss_pred hhhcccccccccchhhHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999987753
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2e-34 Score=303.92 Aligned_cols=254 Identities=33% Similarity=0.589 Sum_probs=210.4
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC------
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------ 86 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~------ 86 (539)
.+..++.|+++|+||.|++..++++++.+.. +.+++.|...|+.+|+|+|||||||||||++|+++|++++.+
T Consensus 170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~ 249 (512)
T TIGR03689 170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG 249 (512)
T ss_pred cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccC
Confidence 4456778999999999999999999998875 889999999999999999999999999999999999998654
Q ss_pred ----EEEEeCchhhHHHhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHH
Q 009263 87 ----FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 158 (539)
Q Consensus 87 ----~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (539)
|+.++++++...|.|.++..++.+|..++.. .||||||||+|.++.++.... ........++
T Consensus 250 ~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~----------s~d~e~~il~ 319 (512)
T TIGR03689 250 DKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV----------SSDVETTVVP 319 (512)
T ss_pred CceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc----------cchHHHHHHH
Confidence 5567778888899999999999999988764 699999999999997764321 1122356789
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc-CCCC---------CCCCH
Q 009263 159 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-VKMS---------DSVDL 228 (539)
Q Consensus 159 ~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~-~~~~---------~~~~~ 228 (539)
+||..||++....+++||+|||+++.|||+++|||||+.+|+|++|+.++|.+||+.++.. .++. ...++
T Consensus 320 ~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~ 399 (512)
T TIGR03689 320 QLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATA 399 (512)
T ss_pred HHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHH
Confidence 9999999998888999999999999999999999999999999999999999999999864 2221 01112
Q ss_pred HHHHh-----------------------------hCCCCCHHHHHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHh
Q 009263 229 SSYAK-----------------------------NLPGWTGARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLT 275 (539)
Q Consensus 229 ~~la~-----------------------------~t~g~s~~dl~~lv~~A~~~A~~~----~~~~I~~~d~~~a~~~~~ 275 (539)
..++. .++.+||++|+++|.+|...|+.+ +...|+.+|+..|+..-.
T Consensus 400 ~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~ 479 (512)
T TIGR03689 400 AALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEF 479 (512)
T ss_pred HHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhh
Confidence 22221 145688999999999999888866 345799999999998765
Q ss_pred cC
Q 009263 276 VG 277 (539)
Q Consensus 276 ~g 277 (539)
..
T Consensus 480 ~~ 481 (512)
T TIGR03689 480 RE 481 (512)
T ss_pred cc
Confidence 43
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.98 E-value=2.8e-31 Score=263.55 Aligned_cols=264 Identities=19% Similarity=0.200 Sum_probs=194.8
Q ss_pred CCcCcCcc-cCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHH
Q 009263 21 TGVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 99 (539)
Q Consensus 21 ~~~~~~dv-~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~ 99 (539)
...+|+++ .|+--.+.-+..++..+... .+..+|+++|.+++||||||||||++|+++|++++.+++.+++.++.+.|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 44567777 55555555555444322211 11236789999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHh-----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-------
Q 009263 100 VGVGSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF------- 167 (539)
Q Consensus 100 ~g~~~~~~~~~f~~a~~-----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~------- 167 (539)
.|++++.++++|..|.. .+||||||||||++++++.+.. .....+.+..+|+..+|+.
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~----------~tv~~qiV~~tLLnl~D~p~~v~l~G 258 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ----------YTVNNQMVNGTLMNIADNPTNVSLGG 258 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC----------cchHHHHHHHHHHHHhcCCccccccc
Confidence 99999999999999975 4699999999999998774311 1111222336888887752
Q ss_pred -----CCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCC----C
Q 009263 168 -----DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG----W 238 (539)
Q Consensus 168 -----~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g----~ 238 (539)
....+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..+. ..++..++..++| |
T Consensus 259 ~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df 335 (413)
T PLN00020 259 DWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDF 335 (413)
T ss_pred cccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchh
Confidence 34567999999999999999999999999975 5799999999999999988765 4678889998887 5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHH
Q 009263 239 TGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 306 (539)
Q Consensus 239 s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~ 306 (539)
.++--..+..++...-+.+- . ++..-+++.. .....+.+..-.......-|.|+.++...
T Consensus 336 ~GAlrar~yd~~v~~~i~~~----g---~~~~~~~l~~-~~~~~p~f~~~~~t~~~l~~~g~~l~~eq 395 (413)
T PLN00020 336 FGALRARVYDDEVRKWIAEV----G---VENLGKKLVN-SKKGPPTFEPPKMTLEKLLEYGNMLVREQ 395 (413)
T ss_pred hhHHHHHHHHHHHHHHHHHh----h---HHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56666666666654443321 1 2222223322 23334455555666778889999988754
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=9.8e-32 Score=280.34 Aligned_cols=239 Identities=40% Similarity=0.685 Sum_probs=221.7
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 99 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~ 99 (539)
+++. .++.|.......+++.+.. +.++..+...|.++|+|+|+|||||||||.+++++|++.+..++.++++++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 7999999999999999986 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCC-CeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 100 VGVGSARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 100 ~g~~~~~~~~~f~~a~~~~-p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
.|++++.+|..|+.|.+.+ |+++||||+|.+++++... ..-...+..+++..+|+..+..+++||++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~------------~~~e~Rv~sqlltL~dg~~~~~~vivl~a 326 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA------------DDVESRVVSQLLTLLDGLKPDAKVIVLAA 326 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc------------chHHHHHHHHHHHHHhhCcCcCcEEEEEe
Confidence 9999999999999999999 9999999999999987542 11245678899999999998899999999
Q ss_pred cCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 009263 179 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 258 (539)
Q Consensus 179 tn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~ 258 (539)
||+|+.||++++| |||++.+.+..|+..+|.+|++.+.+++++..+.++..++..+.||+|+||..+|++|...+.++
T Consensus 327 tnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~- 404 (693)
T KOG0730|consen 327 TNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR- 404 (693)
T ss_pred cCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-
Confidence 9999999999999 99999999999999999999999999999988899999999999999999999999999999887
Q ss_pred CCCCchhhHHHHHHHHhcCC
Q 009263 259 HESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 259 ~~~I~~~d~~~a~~~~~~g~ 278 (539)
++++|..|...+....
T Consensus 405 ----~~~~~~~A~~~i~psa 420 (693)
T KOG0730|consen 405 ----TLEIFQEALMGIRPSA 420 (693)
T ss_pred ----hHHHHHHHHhcCCchh
Confidence 8889999988776543
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=4.2e-31 Score=296.91 Aligned_cols=247 Identities=44% Similarity=0.749 Sum_probs=222.1
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
.++++|+||+|++++++.+++++.. +.+++.|..+|+.+|+|+|||||||||||++|+++|++++.+++.+++.++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999885 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 99 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 99 ~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
+.|.....++.+|..+....|+||||||||.+..++.... .......+++|+..++++.....++||++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-----------~~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-----------GEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-----------chHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 9999999999999999999999999999999987764321 12224577889999998888888999999
Q ss_pred cCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 009263 179 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 258 (539)
Q Consensus 179 tn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~ 258 (539)
||.++.+|++++|+|||++.+.++.|+.++|.+||+.+.....+..+.++..++..+.||+++|+..++++|...+.++.
T Consensus 321 tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~ 400 (733)
T TIGR01243 321 TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRF 400 (733)
T ss_pred cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999998887652
Q ss_pred -------------------CCCCchhhHHHHHHHHhcC
Q 009263 259 -------------------HESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 259 -------------------~~~I~~~d~~~a~~~~~~g 277 (539)
...++.+||..|+..+...
T Consensus 401 ~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 401 IREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred hhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence 1247788999998876643
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.9e-32 Score=272.33 Aligned_cols=248 Identities=33% Similarity=0.578 Sum_probs=210.9
Q ss_pred CCCcCcCc--ccCcHHHHHHHH-H-HHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC-CEEEEeCch
Q 009263 20 STGVKFSD--VAGIDEAVEELQ-E-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQMAGSE 94 (539)
Q Consensus 20 ~~~~~~~d--v~G~~~~k~~L~-~-~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~-~~~~~~~~~ 94 (539)
.|+.+|++ |.|++..-..+- + +...+--|+...++|++.-+|+|||||||||||.+||.|..-++. +--.+++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46777887 577776554443 2 223477888999999999999999999999999999999998853 456689999
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhC--------CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVN--------KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 166 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~--------~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 166 (539)
..++|+|++++++|.+|+.|... .-.||++||||+++..|++..+++ .-...++|+||..|||
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T---------GVhD~VVNQLLsKmDG 363 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST---------GVHDTVVNQLLSKMDG 363 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC---------CccHHHHHHHHHhccc
Confidence 99999999999999999988432 224999999999999987654432 2235789999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccC----CCCCCCCHHHHHhhCCCCCHHH
Q 009263 167 FDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV----KMSDSVDLSSYAKNLPGWTGAR 242 (539)
Q Consensus 167 ~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~----~~~~~~~~~~la~~t~g~s~~d 242 (539)
.+.-.+|+||+-||+.+.+|+||+|||||...+++.+||...|.+|++.|.+++ .++.++|+.++|..|..|||++
T Consensus 364 VeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAE 443 (744)
T KOG0741|consen 364 VEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAE 443 (744)
T ss_pred HHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhH
Confidence 999999999999999999999999999999999999999999999999887654 4668999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC---------------CCCCchhhHHHHHHHHhc
Q 009263 243 LAQLVQEAALVAVRKG---------------HESILSSDMDDAVDRLTV 276 (539)
Q Consensus 243 l~~lv~~A~~~A~~~~---------------~~~I~~~d~~~a~~~~~~ 276 (539)
|+.+++.|...|..|. .-.|+.+||..|++.+.+
T Consensus 444 leglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 444 LEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 9999999999888662 125899999999997764
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=292.94 Aligned_cols=251 Identities=39% Similarity=0.647 Sum_probs=221.6
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeC
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 92 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~ 92 (539)
....++|++|.|.+.+++.|++++.. +..|+.|..+++.||+|+|++||||||||+.|+++|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 35678999999999999999999886 999999999999999999999999999999999999988 456777788
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCc
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 172 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 172 (539)
.+..++|+|..+..++.+|+.|+++.|+|+|+||||-|.+.++.. ..+...+++..||..|+|+..+..
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-----------qEqih~SIvSTLLaLmdGldsRgq 406 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-----------QEQIHASIVSTLLALMDGLDSRGQ 406 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-----------HHHhhhhHHHHHHHhccCCCCCCc
Confidence 999999999999999999999999999999999999999887542 445556788899999999999999
Q ss_pred EEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 173 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 173 vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
|+||+|||+|+.+||+|+|||||++.++||+|+.+.|.+|+..+-.+..-... .-...+|..+.||-++||+.+|.+|+
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988776552211 12688999999999999999999999
Q ss_pred HHHHHhCC----------------CCCchhhHHHHHHHHhcCCCc
Q 009263 252 LVAVRKGH----------------ESILSSDMDDAVDRLTVGPKR 280 (539)
Q Consensus 252 ~~A~~~~~----------------~~I~~~d~~~a~~~~~~g~~~ 280 (539)
+.+.++.- ..|...||-.|+.++.....+
T Consensus 487 l~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 487 LIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred hhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 99987742 236778888888887765443
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=265.26 Aligned_cols=246 Identities=34% Similarity=0.536 Sum_probs=208.8
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
....+++.|+|+.|.+.+|+.+.+.+.+ +..+..|..+- .+++|+||.||||||||+|++|+|.+++..|+.++++++
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3456789999999999999999999987 55687775432 467899999999999999999999999999999999999
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC--CCCcE
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--TGKGV 173 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~--~~~~v 173 (539)
.+.|+|.+++.++.+|.-|+..+|+|+||||+|.+..++... ..+.......++|..+++.. ..++|
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~-----------e~e~srr~ktefLiq~~~~~s~~~drv 291 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN-----------EHESSRRLKTEFLLQFDGKNSAPDDRV 291 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc-----------ccccchhhhhHHHhhhccccCCCCCeE
Confidence 999999999999999999999999999999999999888542 23333456667777777653 34579
Q ss_pred EEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCC-CCCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 009263 174 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM-SDSVDLSSYAKNLPGWTGARLAQLVQEAAL 252 (539)
Q Consensus 174 ivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~-~~~~~~~~la~~t~g~s~~dl~~lv~~A~~ 252 (539)
+||+|||.|+.+|.+++| ||.+++++|+|+.+.|..+|...+.+.+. ..+.++..+++.|.|||+.||.++|.+|..
T Consensus 292 lvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~ 369 (428)
T KOG0740|consen 292 LVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAM 369 (428)
T ss_pred EEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhc
Confidence 999999999999999999 99999999999999999999999987633 345679999999999999999999999976
Q ss_pred HHHHh-------------CCCCCchhhHHHHHHHHhc
Q 009263 253 VAVRK-------------GHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 253 ~A~~~-------------~~~~I~~~d~~~a~~~~~~ 276 (539)
--++. ....|+..|+..++..+..
T Consensus 370 ~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 370 GPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred CchhhcccchhhhhcchhccCCCCcchHHHHHHhhcc
Confidence 54433 2245777777777776654
No 39
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.7e-22 Score=197.28 Aligned_cols=231 Identities=26% Similarity=0.408 Sum_probs=175.0
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhh
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGV 102 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~ 102 (539)
--|++|+-....+.+++++...-.+.+. ...+-++||+|||||||||++|+-||...|..+-.+.+.+..-. -..
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~q 426 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQ 426 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chH
Confidence 3499999999999999988776555443 23577899999999999999999999999999988888775432 233
Q ss_pred hhHHHHHHHHHHHhCCC-eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 009263 103 GSARIRDLFKRAKVNKP-SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR 181 (539)
Q Consensus 103 ~~~~~~~~f~~a~~~~p-~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~ 181 (539)
+..++.++|+.+++... -+|||||.|++...+.... .++.....+|.||-.-- .....++++.+||+
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty----------mSEaqRsaLNAlLfRTG--dqSrdivLvlAtNr 494 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY----------MSEAQRSALNALLFRTG--DQSRDIVLVLATNR 494 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh----------hcHHHHHHHHHHHHHhc--ccccceEEEeccCC
Confidence 45678999999977644 4889999999998775321 34555678888875432 34456888899999
Q ss_pred CCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-----------------------CCC----HHHHHhh
Q 009263 182 RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-----------------------SVD----LSSYAKN 234 (539)
Q Consensus 182 ~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-----------------------~~~----~~~la~~ 234 (539)
|.++|.++.+ |||.+++||+|..++|..+|..|+.++-... ..+ +.+.|..
T Consensus 495 pgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk 572 (630)
T KOG0742|consen 495 PGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKK 572 (630)
T ss_pred ccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHh
Confidence 9999999999 9999999999999999999999987632110 111 5677899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 235 LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 235 t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
|.||||++|..|+--....+.-+....++...|++.++
T Consensus 573 TeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 573 TEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred ccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 99999999999985544444333334455555555444
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=2e-21 Score=194.00 Aligned_cols=213 Identities=16% Similarity=0.255 Sum_probs=157.9
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCC---ceEEEECCCCCcHHHHHHHHHHhc-------CCCEEEEeCch
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPP---HGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSE 94 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~---~giLL~GppGtGKT~la~alA~~~-------~~~~~~~~~~~ 94 (539)
+++++|++++|+++.+++.++..+..+...|..++ .+++|+||||||||++|+++|+.+ ..+++.++.++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 34899999999999999988777777777787654 348999999999999999999875 23689999999
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
+...+.|.+....+.+|+.+. ++||||||+|.+...+.. .......++.|+..|+.. ..+++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-------------~~~~~e~~~~L~~~me~~--~~~~~ 163 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-------------RDYGSEAIEILLQVMENQ--RDDLV 163 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-------------cchHHHHHHHHHHHHhcC--CCCEE
Confidence 999999988777788887753 469999999998643211 111245566777777642 35677
Q ss_pred EEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHh----h--CCCC-CHH
Q 009263 175 FLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAK----N--LPGW-TGA 241 (539)
Q Consensus 175 vIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~----~--t~g~-s~~ 241 (539)
||++++... .++|++.+ ||+.+|+|++|+.+++.+|+..++.+.....+.+ ...+.. . .+.| +++
T Consensus 164 vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR 241 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANAR 241 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHH
Confidence 887776422 34689999 9999999999999999999999998654332222 222222 1 2333 489
Q ss_pred HHHHHHHHHHHHHHHh
Q 009263 242 RLAQLVQEAALVAVRK 257 (539)
Q Consensus 242 dl~~lv~~A~~~A~~~ 257 (539)
++++++..|...-..|
T Consensus 242 ~vrn~ve~~~~~~~~r 257 (287)
T CHL00181 242 SVRNALDRARMRQANR 257 (287)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887655443
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=3.4e-21 Score=190.84 Aligned_cols=213 Identities=18% Similarity=0.272 Sum_probs=157.0
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCC---CceEEEECCCCCcHHHHHHHHHHhc-------CCCEEEEeCc
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKP---PHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGS 93 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~---~~giLL~GppGtGKT~la~alA~~~-------~~~~~~~~~~ 93 (539)
.+++++|++++|+.+++++.++.........|..+ +.+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999999999999999876665555566553 3468999999999999999999864 2478889999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcE
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 173 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 173 (539)
++...+.|.....++++|..+. ++||||||+|.|..... .......++.|+..++.. ..++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~--------------~~~~~~~i~~Ll~~~e~~--~~~~ 144 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE--------------KDFGKEAIDTLVKGMEDN--RNEF 144 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc--------------cchHHHHHHHHHHHHhcc--CCCE
Confidence 9999999998888899988764 46999999999863211 111234577788888753 3456
Q ss_pred EEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhh---------CCCC
Q 009263 174 IFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN---------LPGW 238 (539)
Q Consensus 174 ivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~---------t~g~ 238 (539)
++|++++..+ .++|++.+ ||...|.||.++.+++.+|++.++......-+.+ +..++.. ...-
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~g 222 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFS 222 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCc
Confidence 6665554322 36889998 9999999999999999999999987654432222 2233211 1123
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 009263 239 TGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 239 s~~dl~~lv~~A~~~A~~~ 257 (539)
+++.+.+++..|..+...+
T Consensus 223 n~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 223 NARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6888999998887666544
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.7e-21 Score=195.77 Aligned_cols=214 Identities=25% Similarity=0.329 Sum_probs=161.1
Q ss_pred CCCcCcCcccCcHHHHHHHHH-HHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 20 STGVKFSDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~-~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
..+-+|+.|+--.+.|+++.+ +.++++..+-|++.|..-.+|.|||||||||||+++.|+|+.++..++-++.++...
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~- 273 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL- 273 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-
Confidence 455899999999999998775 555799999999999999999999999999999999999999999998887765433
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC--cEEEE
Q 009263 99 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK--GVIFL 176 (539)
Q Consensus 99 ~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~--~vivI 176 (539)
... ++.++..+ ...+||+|++||+-..-+........ . .......-++..||..+||+-+.. .-|||
T Consensus 274 ----n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~-~---~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv 342 (457)
T KOG0743|consen 274 ----DSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKE-N---FEGDLSRVTLSGLLNFLDGLWSSCGDERIIV 342 (457)
T ss_pred ----cHH-HHHHHHhC--CCCcEEEEeecccccccccccccccc-c---ccCCcceeehHHhhhhhccccccCCCceEEE
Confidence 222 66666653 34579999999986542221100000 0 000122357889999999985544 57888
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCC--CCCHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP--GWTGARLAQLV 247 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~--g~s~~dl~~lv 247 (539)
.|||..+.|||||+||||+|.+|+++.-+...-+.++..|+.... +..-+.++.+... -.|||++...+
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 899999999999999999999999999999999999999987543 1222444444433 35899987653
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=5e-21 Score=191.29 Aligned_cols=210 Identities=17% Similarity=0.265 Sum_probs=159.5
Q ss_pred cccCcHHHHHHHHHHHHHhcChhhhhhcCCCC---CceEEEECCCCCcHHHHHHHHHHhcC-------CCEEEEeCchhh
Q 009263 27 DVAGIDEAVEELQELVRYLKNPELFDKMGIKP---PHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFYQMAGSEFV 96 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~---~~giLL~GppGtGKT~la~alA~~~~-------~~~~~~~~~~~~ 96 (539)
+++|++++|+++.+++.++..+..+...|+.+ ..+++|+||||||||++|+++|+.+. .+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 34899999999999999999998762 379999999998
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
..+.|.+...++.+|+.+. ++||||||++.+...+.. .......++.|+..|+. ...+++||
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~-------------~~~~~~~~~~Ll~~le~--~~~~~~vI 164 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE-------------RDYGQEAIEILLQVMEN--QRDDLVVI 164 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc-------------cchHHHHHHHHHHHHhc--CCCCEEEE
Confidence 8888888788888888764 469999999998643211 11123456677777764 33567888
Q ss_pred EecCCC--C---cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhh--------CCCCCHHH
Q 009263 177 AATNRR--D---LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN--------LPGWTGAR 242 (539)
Q Consensus 177 aatn~~--~---~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~--------t~g~s~~d 242 (539)
++++.. + .++|+|.+ ||...|+||+++.+++..|+..++++....-+.+ ...+... ..| ++++
T Consensus 165 ~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~G-N~R~ 241 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFA-NARS 241 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCC-hHHH
Confidence 777643 2 25899999 9999999999999999999999998754332212 2233322 123 6899
Q ss_pred HHHHHHHHHHHHHHh
Q 009263 243 LAQLVQEAALVAVRK 257 (539)
Q Consensus 243 l~~lv~~A~~~A~~~ 257 (539)
+++++..+..+...|
T Consensus 242 lrn~ve~~~~~~~~r 256 (284)
T TIGR02880 242 IRNAIDRARLRQANR 256 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887665543
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=6.4e-21 Score=168.35 Aligned_cols=130 Identities=46% Similarity=0.727 Sum_probs=113.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCC-CeEEEEeCcchhhhhhcCCcCC
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKD 140 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~-p~Il~iDEiD~l~~~~~~~~~~ 140 (539)
+||+||||||||++|+.+|+.++.+++.+++.++.+.+.+.....+..+|..+.... |+||||||+|.+....+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~--- 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS--- 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc---
Confidence 689999999999999999999999999999999998888889999999999998887 9999999999999876211
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhcCCCCC-CcEEEEEecCCCCcCCccccCCCccceeeecCC
Q 009263 141 TTDHLYNAATQERETTLNQLLIELDGFDTG-KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 203 (539)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~ 203 (539)
........++.|+..++..... .+++||++||.++.++++++| +||+..|++|+
T Consensus 78 --------~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 --------SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp --------SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred --------cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 2334456788888888877665 569999999999999999997 89999999874
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=4.2e-20 Score=173.15 Aligned_cols=195 Identities=24% Similarity=0.346 Sum_probs=131.7
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
..-+|.+|+|++|+++++..+.-++...+... .+..++|||||||+|||+||+.+|++++.+|..+++..+..
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 34578899999999999999988877644321 23458999999999999999999999999999998865322
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC--------C
Q 009263 98 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--------T 169 (539)
Q Consensus 98 ~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~--------~ 169 (539)
...+..++... ....||||||||+|....+ ..|+..|+.+. .
T Consensus 89 ------~~dl~~il~~l--~~~~ILFIDEIHRlnk~~q----------------------e~LlpamEd~~idiiiG~g~ 138 (233)
T PF05496_consen 89 ------AGDLAAILTNL--KEGDILFIDEIHRLNKAQQ----------------------EILLPAMEDGKIDIIIGKGP 138 (233)
T ss_dssp ------CHHHHHHHHT----TT-EEEECTCCC--HHHH----------------------HHHHHHHHCSEEEEEBSSSS
T ss_pred ------HHHHHHHHHhc--CCCcEEEEechhhccHHHH----------------------HHHHHHhccCeEEEEecccc
Confidence 12233344333 2356999999999865432 23444444321 1
Q ss_pred C--------CcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCH
Q 009263 170 G--------KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTG 240 (539)
Q Consensus 170 ~--------~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~ 240 (539)
+ +++.+|+||++...+.++|++ ||.....+..++.++..+|++......++.-+.+ ...+|+++.| +|
T Consensus 139 ~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tP 215 (233)
T PF05496_consen 139 NARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TP 215 (233)
T ss_dssp S-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SH
T ss_pred ccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-Ch
Confidence 1 348899999999999999999 9999999999999999999998877665543322 7788999988 89
Q ss_pred HHHHHHHHHHHH
Q 009263 241 ARLAQLVQEAAL 252 (539)
Q Consensus 241 ~dl~~lv~~A~~ 252 (539)
+-..++++++.-
T Consensus 216 RiAnrll~rvrD 227 (233)
T PF05496_consen 216 RIANRLLRRVRD 227 (233)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 888888877653
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.83 E-value=2.1e-19 Score=184.03 Aligned_cols=223 Identities=24% Similarity=0.282 Sum_probs=165.7
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
+|..+.+|.+|++++|+++.++.+..++...... ..++.+++|+||||||||++|+++|++++..+...++..
T Consensus 14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~ 86 (328)
T PRK00080 14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPA 86 (328)
T ss_pred hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccc
Confidence 3356778899999999999999999887654332 145678999999999999999999999999888777654
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHh------cC-C
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL------DG-F 167 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l------d~-~ 167 (539)
+.. ...+..++... ..++||||||||.+..... ..+..++... +. .
T Consensus 87 ~~~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~-------------------e~l~~~~e~~~~~~~l~~~~ 139 (328)
T PRK00080 87 LEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPVVE-------------------EILYPAMEDFRLDIMIGKGP 139 (328)
T ss_pred ccC------hHHHHHHHHhc--ccCCEEEEecHhhcchHHH-------------------HHHHHHHHhcceeeeeccCc
Confidence 321 12233344332 3567999999999854321 1122222211 00 0
Q ss_pred C------CCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHHhhCCCCCH
Q 009263 168 D------TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTG 240 (539)
Q Consensus 168 ~------~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~-~~~~la~~t~g~s~ 240 (539)
. .-.++.+|++||.+..++++|++ ||...+.+++|+.+++.+|++..+...++.-+. .+..++..+.| ++
T Consensus 140 ~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~p 216 (328)
T PRK00080 140 AARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TP 216 (328)
T ss_pred cccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-Cc
Confidence 0 11347889999999999999988 999999999999999999999888765544322 26788888877 68
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 009263 241 ARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 241 ~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
+.+..+++.+..+|..++...|+.+++..+++..
T Consensus 217 R~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 217 RIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999998888877777789999999999765
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3e-20 Score=179.23 Aligned_cols=238 Identities=22% Similarity=0.220 Sum_probs=171.6
Q ss_pred cCcccCcHHHHHHHHHHHHH-hcChhhhhhc-CCCCCceEEEECCCCCcHHHHHHHHHHhcC---------CCEEEEeCc
Q 009263 25 FSDVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGS 93 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~-g~~~~~giLL~GppGtGKT~la~alA~~~~---------~~~~~~~~~ 93 (539)
|+.++=-...|++|..++.. +...+.--.- -+...+-+||+||||||||+|+||+|..+. ..++.++++
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 44455445678887776543 2222211000 123445699999999999999999999873 346889999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhC-----CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVN-----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 168 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~-----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 168 (539)
.+.++|.+++.+.+..+|.+.... .--.|+|||+++|+..|.+...+. ......+++|.+|+++|.+.
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~-------EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRN-------EPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCC-------CCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999876432 223678999999998885433321 23345689999999999999
Q ss_pred CCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCC---------C----CCC-----CHHH
Q 009263 169 TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM---------S----DSV-----DLSS 230 (539)
Q Consensus 169 ~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~---------~----~~~-----~~~~ 230 (539)
..++|++++|+|-.+.+|.|+.+ |-|.+.++++|+...+.+|++.++...-- . ..+ ....
T Consensus 294 ~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~ 371 (423)
T KOG0744|consen 294 RYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNI 371 (423)
T ss_pred cCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHH
Confidence 99999999999999999999999 99999999999999999999988754210 0 000 1222
Q ss_pred HHhh-CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 009263 231 YAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 273 (539)
Q Consensus 231 la~~-t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~ 273 (539)
+... +.|.||+.|+.+=-.|...- -....|+.++|..|+-.
T Consensus 372 ~~~~~~~gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 372 LIELSTVGLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLE 413 (423)
T ss_pred HHHHhhcCCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHH
Confidence 2222 57999999988754443222 12247888888777643
No 48
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.82 E-value=3.3e-19 Score=169.91 Aligned_cols=221 Identities=25% Similarity=0.322 Sum_probs=173.9
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
...-+|.+|+|.+|++++|+.|.-++..-+... ....++||+||||.|||+||+.+|+++++.+-..++..+.
T Consensus 17 e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le 89 (332)
T COG2255 17 ERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE 89 (332)
T ss_pred hcccCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc
Confidence 344578999999999999999998888644332 3556899999999999999999999999999988887653
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--------C
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------D 168 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--------~ 168 (539)
.. ..+-.++.. ....+||||||||++.+.... + |.-.|+.| .
T Consensus 90 K~------gDlaaiLt~--Le~~DVLFIDEIHrl~~~vEE-------------------~---LYpaMEDf~lDI~IG~g 139 (332)
T COG2255 90 KP------GDLAAILTN--LEEGDVLFIDEIHRLSPAVEE-------------------V---LYPAMEDFRLDIIIGKG 139 (332)
T ss_pred Ch------hhHHHHHhc--CCcCCeEEEehhhhcChhHHH-------------------H---hhhhhhheeEEEEEccC
Confidence 31 223333333 234479999999998755322 1 22223322 1
Q ss_pred C--------CCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCC
Q 009263 169 T--------GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWT 239 (539)
Q Consensus 169 ~--------~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s 239 (539)
+ -+++.+|++|.+...+...|+. ||.....+..++.++..+|+........+.-+.+ ...+|+++.| +
T Consensus 140 p~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-T 216 (332)
T COG2255 140 PAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-T 216 (332)
T ss_pred CccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-C
Confidence 1 1458899999999999999999 9999999999999999999998887766553333 7888999988 8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 240 GARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 240 ~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
|+=...++++..-.|.-++...|+.+-...|+......
T Consensus 217 PRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd 254 (332)
T COG2255 217 PRIANRLLRRVRDFAQVKGDGDIDRDIADKALKMLDVD 254 (332)
T ss_pred cHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhCcc
Confidence 99999999999999998999999999999999887653
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.7e-19 Score=188.40 Aligned_cols=206 Identities=27% Similarity=0.418 Sum_probs=172.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 135 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~ 135 (539)
......+||+|+||||||++++++|.+++.+++.++|.++.....+..+.++...|..|+.+.|+|||+-++|.|+..+.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 34455699999999999999999999999999999999999998888999999999999999999999999999985543
Q ss_pred CCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHH
Q 009263 136 GIFKDTTDHLYNAATQERETTLNQLLIELDGFD-TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILK 214 (539)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~ 214 (539)
++ ..-...+.++.++. ++.+. +..+++||++|+..+.+++.+++ -|-..|.++.|+.++|.+||+
T Consensus 508 gg-----------ed~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq 573 (953)
T KOG0736|consen 508 GG-----------EDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQ 573 (953)
T ss_pred Cc-----------hhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHH
Confidence 31 22334455666665 33333 56789999999999999999998 677889999999999999999
Q ss_pred HHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH---hC-----------------CCCCchhhHHHHHHHH
Q 009263 215 IHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR---KG-----------------HESILSSDMDDAVDRL 274 (539)
Q Consensus 215 ~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~---~~-----------------~~~I~~~d~~~a~~~~ 274 (539)
.++....+..++....++.++.||+.+++..++..+-..+.. +. ...++++||..|+.+.
T Consensus 574 ~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 574 WYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred HHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHH
Confidence 999999999999999999999999999999998766322221 11 1568999999999876
Q ss_pred h
Q 009263 275 T 275 (539)
Q Consensus 275 ~ 275 (539)
.
T Consensus 654 ~ 654 (953)
T KOG0736|consen 654 Q 654 (953)
T ss_pred H
Confidence 4
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.81 E-value=1.2e-18 Score=176.91 Aligned_cols=214 Identities=23% Similarity=0.294 Sum_probs=154.7
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhh
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVG 103 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~ 103 (539)
+|++++|++++++.|..++...... ...+.+++|+||||||||++|+++|++++.++..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999998887643322 134567999999999999999999999998887766543211
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc-------CC------CCC
Q 009263 104 SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-------GF------DTG 170 (539)
Q Consensus 104 ~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld-------~~------~~~ 170 (539)
...+...+... ..+.+|||||+|.+....+. .+..++.... +. ...
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~e-------------------~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 127 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVEE-------------------LLYPAMEDFRLDIVIGKGPSARSVRLDL 127 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHHH-------------------HhhHHHhhhheeeeeccCccccceeecC
Confidence 11222333322 34679999999998644211 1111111100 00 012
Q ss_pred CcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCCCHHHHHHHHHH
Q 009263 171 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQE 249 (539)
Q Consensus 171 ~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~dl~~lv~~ 249 (539)
.++.+|++||.+..+++++++ ||...+.+++|+.+++.++++..+......-+ ..+..++..+.| +++.+.++++.
T Consensus 128 ~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~ 204 (305)
T TIGR00635 128 PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRR 204 (305)
T ss_pred CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 347889999999999999998 99889999999999999999988875444322 226788888877 57888999998
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHH
Q 009263 250 AALVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 250 A~~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
+...|...+...|+.+++..++..+
T Consensus 205 ~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 205 VRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 8878777666789999999999873
No 51
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.5e-18 Score=179.40 Aligned_cols=243 Identities=19% Similarity=0.201 Sum_probs=178.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCC----CEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGV----PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATR 133 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~ 133 (539)
.+.++||+||+|+|||.|+++++++... .+..++|+.+.........+.++.+|..+.+++|+||++|++|.|...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 4567999999999999999999998854 456789988877766667778899999999999999999999999873
Q ss_pred hcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHH
Q 009263 134 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEIL 213 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il 213 (539)
... .++..+. ........+|++....- ..+..+.||++.+....++|.|.+|++|+.++.+|.|+..+|.+||
T Consensus 510 s~~-e~~q~~~----~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL 582 (952)
T KOG0735|consen 510 SSN-ENGQDGV----VSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEIL 582 (952)
T ss_pred Ccc-cCCcchH----HHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHH
Confidence 221 1111111 11222233444433321 3345578999999999999999999999999999999999999999
Q ss_pred HHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHhcCC-CcCCccccc
Q 009263 214 KIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLTVGP-KRRGIELGN 287 (539)
Q Consensus 214 ~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~----~~~~I~~~d~~~a~~~~~~g~-~~~~~~~~~ 287 (539)
+..+++.... ...|++.++..|.||...|+..++.+|...|... +...+|.++|.++++...+-. +.-...-+.
T Consensus 583 ~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~t 662 (952)
T KOG0735|consen 583 TTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKST 662 (952)
T ss_pred HHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccC
Confidence 9999875522 2234667999999999999999999999888732 223789999999998876422 111111111
Q ss_pred ccch--hhhHHHHHHHHHHHHh
Q 009263 288 QGQS--RRAATEVGVAMISHLL 307 (539)
Q Consensus 288 ~~~~--~~a~hEaGhAvv~~~l 307 (539)
..++ .-..+|+-.++...+-
T Consensus 663 gi~w~digg~~~~k~~l~~~i~ 684 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIE 684 (952)
T ss_pred CCCceecccHHHHHHHHHHHHh
Confidence 1222 3467888887776553
No 52
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.1e-18 Score=181.41 Aligned_cols=203 Identities=25% Similarity=0.335 Sum_probs=152.1
Q ss_pred ccccccccccchhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHH
Q 009263 2 LIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 81 (539)
|-.++|+.+...++.......+--+|-.|++++|+++.+++..-+-. |...++.++|+||||+|||+++++||+
T Consensus 387 lt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 387 LTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred HHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 34678888888877777777777889999999999999988752211 123456799999999999999999999
Q ss_pred hcCCCEEEEeCchhhHH---------HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhH
Q 009263 82 EAGVPFYQMAGSEFVEV---------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 152 (539)
Q Consensus 82 ~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 152 (539)
.+|+.|+.++...+.+. |+|....++-+.++.....+| +++|||||.++..-++ ++...+....+++
T Consensus 461 ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qG---DPasALLElLDPE 536 (906)
T KOG2004|consen 461 ALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQG---DPASALLELLDPE 536 (906)
T ss_pred HhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCC---ChHHHHHHhcChh
Confidence 99999999987655432 888888899999999998899 9999999999943332 2222222222222
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc
Q 009263 153 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 153 ~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~ 219 (539)
.+..++.-. ||---.-+.|++|||.|..+.++++|++ |+. .|+++-+..+|...|-+.|+-.
T Consensus 537 QNanFlDHY--LdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 537 QNANFLDHY--LDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred hccchhhhc--cccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 222211111 1101112569999999999999999999 874 8999999999999999988743
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=7.7e-18 Score=168.01 Aligned_cols=207 Identities=24% Similarity=0.402 Sum_probs=139.7
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHH
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 99 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~ 99 (539)
-+|.+|+|++|++....+-.-+-+.+... ...+++||||||||||++|+.||+..+.+|..+|...
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~---------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~----- 83 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAG---------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT----- 83 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcC---------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-----
Confidence 46889999999998864322222222222 2347899999999999999999999999999998753
Q ss_pred hhhhhHHHHHHHHHHHhCC----CeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEE
Q 009263 100 VGVGSARIRDLFKRAKVNK----PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 175 (539)
Q Consensus 100 ~g~~~~~~~~~f~~a~~~~----p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viv 175 (539)
.+.+.++++++.|+... .-|||||||++|....|. .||-.++ +..+++
T Consensus 84 --~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD----------------------~lLp~vE----~G~iil 135 (436)
T COG2256 84 --SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQD----------------------ALLPHVE----NGTIIL 135 (436)
T ss_pred --ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhh----------------------hhhhhhc----CCeEEE
Confidence 34567889999885442 359999999998765432 3444442 356777
Q ss_pred EEec-CCCC-cCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc--CCCC------CCCCHHHHHhhCCCCCHHHHHH
Q 009263 176 LAAT-NRRD-LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK--VKMS------DSVDLSSYAKNLPGWTGARLAQ 245 (539)
Q Consensus 176 Iaat-n~~~-~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~--~~~~------~~~~~~~la~~t~g~s~~dl~~ 245 (539)
|++| ..|. .+.++|++ | .+++.+.+.+.++..+++...+.. ..+. ++...+.++..+.| |.+.
T Consensus 136 IGATTENPsF~ln~ALlS--R-~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~ 208 (436)
T COG2256 136 IGATTENPSFELNPALLS--R-ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARR 208 (436)
T ss_pred EeccCCCCCeeecHHHhh--h-hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHH
Confidence 7665 3444 79999999 6 468899999999999999884433 2222 11125667777766 5555
Q ss_pred HHHHHHHHHHHhC-CCCCchhhHHHHHHHHh
Q 009263 246 LVQEAALVAVRKG-HESILSSDMDDAVDRLT 275 (539)
Q Consensus 246 lv~~A~~~A~~~~-~~~I~~~d~~~a~~~~~ 275 (539)
++|..-..+.... ...++.+++++.+.+..
T Consensus 209 aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~ 239 (436)
T COG2256 209 ALNLLELAALSAEPDEVLILELLEEILQRRS 239 (436)
T ss_pred HHHHHHHHHHhcCCCcccCHHHHHHHHhhhh
Confidence 5443333332221 12344777777776643
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.76 E-value=3.3e-18 Score=193.17 Aligned_cols=164 Identities=29% Similarity=0.384 Sum_probs=123.2
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH--------
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-------- 97 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~-------- 97 (539)
+++.|++++++++.+++....... ...+.++||+||||||||++|+++|+.++.+++.+++..+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 459999999999998766432111 112347999999999999999999999999999997654322
Q ss_pred -HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC-----CC---
Q 009263 98 -VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-----FD--- 168 (539)
Q Consensus 98 -~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~-----~~--- 168 (539)
.|.|.....+.+.|..+....| ||||||||.+....++. ..+.|+..+|. |.
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~------------------~~~aLl~~ld~~~~~~f~d~~ 454 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD------------------PASALLEVLDPEQNNAFSDHY 454 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC------------------HHHHHHHhcCHHhcCcccccc
Confidence 3556666677778888776666 89999999998543211 12334444431 11
Q ss_pred -----CCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHh
Q 009263 169 -----TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 217 (539)
Q Consensus 169 -----~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l 217 (539)
...++++|+|||.++.++++|++ ||. +|.|+.|+.+++.+|++.++
T Consensus 455 ~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 455 LDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 12478999999999999999999 995 78999999999999998876
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=2.4e-17 Score=185.28 Aligned_cols=224 Identities=19% Similarity=0.271 Sum_probs=160.8
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQM 90 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~~ 90 (539)
.+-++++++|+++...++.+++. . +...+++|+||||||||++|+++|..+ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~---~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC---R---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 45578999999988776655442 1 234578999999999999999999987 6778899
Q ss_pred eCchhh--HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 009263 91 AGSEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 168 (539)
Q Consensus 91 ~~~~~~--~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 168 (539)
+++.+. ..+.|..+.+++.+|+.+....++||||||+|.|.+......+. ....+.|...+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~-------------~~~~~~L~~~l---- 307 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS-------------MDASNLLKPAL---- 307 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc-------------HHHHHHHHHHH----
Confidence 888887 46788889999999999987789999999999998654321100 11122233333
Q ss_pred CCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-----CCCCHHHHHhhCCCC
Q 009263 169 TGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----DSVDLSSYAKNLPGW 238 (539)
Q Consensus 169 ~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-----~~~~~~~la~~t~g~ 238 (539)
.+..+.+|++||..+ ..|+++.| ||. .|+++.|+.+++.+|++.......-. .+..+..++..+..|
T Consensus 308 ~~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ry 384 (731)
T TIGR02639 308 SSGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARY 384 (731)
T ss_pred hCCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcc
Confidence 246789999999643 57999999 997 79999999999999999766542211 112255555555444
Q ss_pred -----CHHHHHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHhc
Q 009263 239 -----TGARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 239 -----s~~dl~~lv~~A~~~A~~~----~~~~I~~~d~~~a~~~~~~ 276 (539)
-|.....++++|......+ ....|+.+|+..++.....
T Consensus 385 i~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 385 INDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred cccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 3445566677776544322 2346999999999998753
No 56
>PRK04195 replication factor C large subunit; Provisional
Probab=99.75 E-value=4.4e-17 Score=175.11 Aligned_cols=212 Identities=21% Similarity=0.258 Sum_probs=150.5
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
+|.++++|.+|+||+|++++++.|..++...... .+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 5788899999999999999999999888653321 34778999999999999999999999999999999887
Q ss_pred hhHHHhhhhhHHHHHHHHHHHh------CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 009263 95 FVEVLVGVGSARIRDLFKRAKV------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 168 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~------~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 168 (539)
.... ..++.+...+.. ..+.||+|||+|.+..... ...++.++..++.
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d------------------~~~~~aL~~~l~~-- 128 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED------------------RGGARAILELIKK-- 128 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc------------------hhHHHHHHHHHHc--
Confidence 5432 122222222211 2467999999999864211 1223445544441
Q ss_pred CCCcEEEEEecCCCCcCCc-cccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCCCHHHHHHH
Q 009263 169 TGKGVIFLAATNRRDLLDP-ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQL 246 (539)
Q Consensus 169 ~~~~vivIaatn~~~~ld~-al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~dl~~l 246 (539)
.+..+|+++|.+..+++ .+++ .+..|.|++|+..+...+++..+...++..+ ..+..++..+.| |++.+
T Consensus 129 --~~~~iIli~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~a 199 (482)
T PRK04195 129 --AKQPIILTANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSA 199 (482)
T ss_pred --CCCCEEEeccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHH
Confidence 23345667888888777 5554 4678999999999999999998876554322 236777777655 77777
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 247 VQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 247 v~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
++....++ .+...|+.+++....
T Consensus 200 in~Lq~~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 200 INDLQAIA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHh--cCCCCCcHHHHHHhh
Confidence 77665543 355678888877554
No 57
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.5e-18 Score=179.46 Aligned_cols=202 Identities=25% Similarity=0.344 Sum_probs=151.2
Q ss_pred ccccccccccchhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHH
Q 009263 2 LIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 81 (539)
|++++|+...-....-.....+--.|-.|++++|+++.+++...+..... .+.-+||+||||+|||+|++.||+
T Consensus 299 ll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~------kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 299 LLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKL------KGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred HHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccC------CCcEEEEECCCCCCchhHHHHHHH
Confidence 56677775555555444555566678899999999999988764433221 234689999999999999999999
Q ss_pred hcCCCEEEEeCchhhHH---------HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhH
Q 009263 82 EAGVPFYQMAGSEFVEV---------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 152 (539)
Q Consensus 82 ~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 152 (539)
.++.+|+.++.....+. |+|....++-+-+..|...+| +++|||||.++..-++ ++.+.+....+++
T Consensus 373 al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rG---DPaSALLEVLDPE 448 (782)
T COG0466 373 ALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRG---DPASALLEVLDPE 448 (782)
T ss_pred HhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCC---ChHHHHHhhcCHh
Confidence 99999999987655432 888888889889999999999 9999999999876443 3333333333444
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhc
Q 009263 153 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 218 (539)
Q Consensus 153 ~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~ 218 (539)
.+..+..-.-+++ -.=++|++|+|+|..+.++.+|++ |+. +|+++-++.+|..+|-+.|+=
T Consensus 449 QN~~F~DhYLev~--yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 449 QNNTFSDHYLEVP--YDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hcCchhhccccCc--cchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 4333333222221 112569999999999999999999 874 899999999999999998873
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=3.3e-17 Score=174.98 Aligned_cols=206 Identities=18% Similarity=0.282 Sum_probs=150.0
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC--------
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------- 86 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------- 86 (539)
.+..++++.+|+||+|++.+++.|.+.+..- +.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 3556789999999999999999998877632 345578999999999999999999988751
Q ss_pred ---------------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCc
Q 009263 87 ---------------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDT 141 (539)
Q Consensus 87 ---------------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~ 141 (539)
++.++... ..+...++++.+.+.. ....|+||||+|.|..
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------- 138 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------- 138 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------
Confidence 12222110 1223456666655432 3356999999999742
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCC
Q 009263 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK 221 (539)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~ 221 (539)
...|.||+.|+. .+.++++|.+||.++.|.+.+++ |+ ..+.|+.++.++..+.++..+.+.+
T Consensus 139 -------------~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 139 -------------HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred -------------HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcC
Confidence 346788888873 55678888899999999999998 74 6889999999999999988877655
Q ss_pred CCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHH
Q 009263 222 MSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 269 (539)
Q Consensus 222 ~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~ 269 (539)
+..+.+ +..+++.+.| +.++..+++.++..+. ...|+.+++..
T Consensus 201 i~~d~eAL~~IA~~A~G-s~RdALsLLdQaia~~----~~~It~~~V~~ 244 (700)
T PRK12323 201 IAHEVNALRLLAQAAQG-SMRDALSLTDQAIAYS----AGNVSEEAVRG 244 (700)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 443322 5667888777 8999988888766432 23465555443
No 59
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=7.6e-17 Score=168.47 Aligned_cols=207 Identities=21% Similarity=0.264 Sum_probs=150.8
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
|..+++|.+|+||+|++.+...|...+..- +.+..+||+||||||||++|+.+|+.++..
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 566889999999999999999888776521 244568999999999999999999998652
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.+++. ...+...++++.+.+. .....|+||||+|.+..
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~--------------- 135 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD--------------- 135 (484)
T ss_pred CCcHHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------
Confidence 2222211 0112334555544443 23456999999999753
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CC
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SV 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~ 226 (539)
..+|.||..++. ++..+++|.+|+.++.+.+++++ |+ ..+.|..++.++..+.++..+...++.- +.
T Consensus 136 -------~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e 203 (484)
T PRK14956 136 -------QSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQE 203 (484)
T ss_pred -------HHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 346788888863 55678888899999999999998 75 4688999999888888888887655432 22
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..+++.+.| +.++.-+++..+...+ ...|+.+++.+.+
T Consensus 204 AL~~Ia~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 204 GLFWIAKKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 37778888887 7888888888766432 2358888876665
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=9.3e-17 Score=173.61 Aligned_cols=206 Identities=18% Similarity=0.263 Sum_probs=149.3
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC--------
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------- 86 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------- 86 (539)
.+..++++.+|+||+|++.+++.|++.+.. .+.+..+||+||+|||||++++.+|+.+++.
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC 73 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC 73 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC
Confidence 356789999999999999999998877642 1345678999999999999999999988642
Q ss_pred ----------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhh
Q 009263 87 ----------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLY 146 (539)
Q Consensus 87 ----------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~ 146 (539)
++.++..+ ..+...++++++.+.. ....|+||||+|.|..
T Consensus 74 G~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------- 133 (830)
T PRK07003 74 GVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------- 133 (830)
T ss_pred cccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------------
Confidence 22222211 1223446666665532 2346999999999742
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-
Q 009263 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS- 225 (539)
Q Consensus 147 ~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~- 225 (539)
..+|.||+.|+. .+.+++||++||.++.|.+.+++ |+ ..|.|..++.++..+.|+..+.+.++.-+
T Consensus 134 --------~A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~ 200 (830)
T PRK07003 134 --------HAFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEP 200 (830)
T ss_pred --------HHHHHHHHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCH
Confidence 236778887763 45578888899999999999998 75 68899999999999999988876554422
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHH
Q 009263 226 VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 269 (539)
Q Consensus 226 ~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~ 269 (539)
..+..|++.+.| +.++..+++.++..+. ...|+.+++..
T Consensus 201 eAL~lIA~~A~G-smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 201 QALRLLARAAQG-SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 236777888888 7888888888776443 23455555443
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=9.9e-17 Score=170.14 Aligned_cols=208 Identities=22% Similarity=0.274 Sum_probs=145.2
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC-----------
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----------- 85 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~----------- 85 (539)
..+++|.+|+||+|++.+++.|...+.. . +.+.++||+||||||||++|+++|+.++.
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~---~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKK---N--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 3578999999999999998888776542 1 35567999999999999999999998864
Q ss_pred -------------CEEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhh
Q 009263 86 -------------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 148 (539)
Q Consensus 86 -------------~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~ 148 (539)
.++.++++. ..+...++.+...+.. ....||||||+|.+...
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--------------- 132 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--------------- 132 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH---------------
Confidence 244444321 1122344555444432 23469999999997532
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CCC
Q 009263 149 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVD 227 (539)
Q Consensus 149 ~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~~ 227 (539)
.++.|+..++. .+..+++|++|+.+..+++++.+ |+ ..+.|++|+.++...+++..+...+..- +..
T Consensus 133 -------a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~ea 200 (472)
T PRK14962 133 -------AFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREA 200 (472)
T ss_pred -------HHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHH
Confidence 24566776663 33467777777778899999998 76 4899999999999999998886544332 223
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 009263 228 LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 273 (539)
Q Consensus 228 ~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~ 273 (539)
+..++..+.| +.+.+.+.+..+..++ + ..||.+++.+++..
T Consensus 201 l~~Ia~~s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 201 LSFIAKRASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALGL 241 (472)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcC
Confidence 6778887766 5666666666544332 2 34999999988743
No 62
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.72 E-value=1.2e-16 Score=177.56 Aligned_cols=222 Identities=20% Similarity=0.295 Sum_probs=155.7
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEEEeCc
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGS 93 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~~~~~ 93 (539)
+++.++|.++...++.+++.. +...++||+||||||||++|+++|... +..++.++..
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 466777877776666554432 234578999999999999999999864 4445555555
Q ss_pred hhh--HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 94 EFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 94 ~~~--~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
.+. ..|.|..+.+++.+|..+....++||||||||.+.+...... ........+..++ .+.
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~----------g~~d~~nlLkp~L-------~~g 314 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG----------GQVDAANLIKPLL-------SSG 314 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC----------cHHHHHHHHHHHH-------hCC
Confidence 554 346788888999999988888889999999999987643210 1111122233322 346
Q ss_pred cEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHH-----Hhh-----CC
Q 009263 172 GVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY-----AKN-----LP 236 (539)
Q Consensus 172 ~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~l-----a~~-----t~ 236 (539)
.+.+|++||.++ ..|++|.| ||+ .|.++.|+.+++..||+.+...+....++.+... +.. ..
T Consensus 315 ~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~ 391 (758)
T PRK11034 315 KIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIND 391 (758)
T ss_pred CeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccC
Confidence 799999999765 47999999 996 7999999999999999988766555544443222 221 23
Q ss_pred CCCHHHHHHHHHHHHHHHH----HhCCCCCchhhHHHHHHHHhcC
Q 009263 237 GWTGARLAQLVQEAALVAV----RKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 237 g~s~~dl~~lv~~A~~~A~----~~~~~~I~~~d~~~a~~~~~~g 277 (539)
.+-|.....++.+|+.... ......|+.+|+.+.+.+...-
T Consensus 392 r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 392 RHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARI 436 (758)
T ss_pred ccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCC
Confidence 3457788889998876542 1223468899999998887643
No 63
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.6e-16 Score=170.16 Aligned_cols=219 Identities=44% Similarity=0.726 Sum_probs=194.0
Q ss_pred hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEE
Q 009263 45 LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFI 124 (539)
Q Consensus 45 l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~i 124 (539)
+..+..+..++..++++++++||||+|||+++++++.+ +..+..+++......+.+......+..|..+....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567788889999999999999999999999999999 66668889999999999999999999999999999999999
Q ss_pred eCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCC
Q 009263 125 DEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAP 204 (539)
Q Consensus 125 DEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P 204 (539)
||+|.+...+... ........+.+++..++++.... +++++.+|.+..+++++++|+||++.+.++.|
T Consensus 83 d~~~~~~~~~~~~-----------~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 83 DEIDALAPKRSSD-----------QGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred chhhhcccCcccc-----------ccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCC
Confidence 9999999887641 22334567888888888888444 88899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC------CCCCchhhHHHHHHHHhc
Q 009263 205 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG------HESILSSDMDDAVDRLTV 276 (539)
Q Consensus 205 ~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~------~~~I~~~d~~~a~~~~~~ 276 (539)
+...+.+|+..+........+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 151 ~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred CHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 999999999999888888878899999999999999999999999999988875 346888999999998765
No 64
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.72 E-value=3.7e-16 Score=164.69 Aligned_cols=242 Identities=20% Similarity=0.239 Sum_probs=156.4
Q ss_pred CCcCcCc-ccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeCch
Q 009263 21 TGVKFSD-VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSE 94 (539)
Q Consensus 21 ~~~~~~d-v~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~~~ 94 (539)
+..+|++ ++|.+... ....+......+. ...++++||||||+|||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n~~-a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRL-AHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcHHH-HHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 5678898 56654321 2222222222221 234579999999999999999999987 57789999988
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
|...+...........|.... ..+++|+|||+|.+.++.. ...+...+++.+. .....+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~~~-------~~~~~i 235 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGKER-------------TQEEFFHTFNALH-------ENGKQI 235 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHH-------HCCCCE
Confidence 876554332211112222222 2367999999999864421 1111222223222 223345
Q ss_pred EEEecCCCCc---CCccccCCCccc--eeeecCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHHhhCCCCCHHHHHHHHH
Q 009263 175 FLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQ 248 (539)
Q Consensus 175 vIaatn~~~~---ld~al~r~gRf~--~~i~v~~P~~~er~~il~~~l~~~~~~~~~-~~~~la~~t~g~s~~dl~~lv~ 248 (539)
||+++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..+....+.-+. .++.++....+ +.++|+.+++
T Consensus 236 iits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~ 312 (405)
T TIGR00362 236 VLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALN 312 (405)
T ss_pred EEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 6655555654 5678888 776 489999999999999999998776544322 26778887766 8999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHH
Q 009263 249 EAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 306 (539)
Q Consensus 249 ~A~~~A~~~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~ 306 (539)
.....|...+ ..||.+.+.+++...... .++.+..+++-++|..++
T Consensus 313 ~l~~~a~~~~-~~it~~~~~~~L~~~~~~-----------~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 313 RLLAYASLTG-KPITLELAKEALKDLLRA-----------KKKEITIENIQEVVAKYY 358 (405)
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHhccc-----------cCCCCCHHHHHHHHHHHc
Confidence 9888886654 569999999998765321 112355667777776554
No 65
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.2e-16 Score=169.21 Aligned_cols=207 Identities=20% Similarity=0.286 Sum_probs=150.1
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
+..+++|.+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 5 LarKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 34568999999999999999999887652 2345678999999999999999999998652
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.+++++ ..+...+|++...+.. ....|+||||+|.|..
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------- 132 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------- 132 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------
Confidence 23333221 1123445666554422 2456999999998753
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCC-
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV- 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~- 226 (539)
...+.|+..++. .+..+.+|.+|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+.+.++.-+.
T Consensus 133 -------~A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e 200 (702)
T PRK14960 133 -------HSFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD 200 (702)
T ss_pred -------HHHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 235677777764 34566777788888888888887 65 688999999999999999888776544322
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..++..+.| +.+++.+++..+..+ +...|+.+++...+
T Consensus 201 AL~~IA~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 201 AIWQIAESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 36778888776 888888888776643 34568888877654
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=4.3e-16 Score=165.87 Aligned_cols=218 Identities=19% Similarity=0.270 Sum_probs=155.6
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE----
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ---- 89 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~---- 89 (539)
..|..+++|.+|+|++|++.++..|...+.. .+.+.++||+||||||||++|+++|+.+++.-..
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~ 77 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT 77 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc
Confidence 3466789999999999999999988876542 2346689999999999999999999988652110
Q ss_pred -------E-eCchhhHH----------HhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 90 -------M-AGSEFVEV----------LVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 90 -------~-~~~~~~~~----------~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
+ +|..+... -...+...++.+++.+... ...|++|||+|.+..
T Consensus 78 ~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------------- 142 (507)
T PRK06645 78 TIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------------- 142 (507)
T ss_pred CcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------
Confidence 0 01111100 0112345567777766432 345999999998742
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-C
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~ 226 (539)
..++.|+..++. ++..+++|++|+.++.+.+++++ |+ ..++|+.++.++...+++..+++.+...+ .
T Consensus 143 -------~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e 210 (507)
T PRK06645 143 -------GAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE 210 (507)
T ss_pred -------HHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 235677777763 45567777788888889999988 65 57889999999999999999987654433 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..++..+.| +.+++.+++..+..++... ...||.+++.+.+
T Consensus 211 AL~~Ia~~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 211 ALRIIAYKSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 36778888877 8999999999887665322 2368888887665
No 67
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.70 E-value=2e-16 Score=171.14 Aligned_cols=219 Identities=26% Similarity=0.348 Sum_probs=150.3
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CC
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GV 85 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~ 85 (539)
|.++.++.+|++++|++..++.++..+ . ...+.++||+||||||||++|+++.+.+ +.
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~ 122 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGA 122 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCC
Confidence 455678899999999999988887542 1 1235689999999999999999998642 36
Q ss_pred CEEEEeCchh-------hHHHhhhhhH----------------HHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCch
Q 009263 86 PFYQMAGSEF-------VEVLVGVGSA----------------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTT 142 (539)
Q Consensus 86 ~~~~~~~~~~-------~~~~~g~~~~----------------~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~ 142 (539)
+|+.++|... .+...+.... .....+. .....+|||||||.+....
T Consensus 123 ~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~~-------- 191 (531)
T TIGR02902 123 AFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPVQ-------- 191 (531)
T ss_pred CEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHHH--------
Confidence 8899987631 1111111000 0011122 2234699999999986543
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCC--------------------------CCCCcEE-EEEecCCCCcCCccccCCCcc
Q 009263 143 DHLYNAATQERETTLNQLLIELDGF--------------------------DTGKGVI-FLAATNRRDLLDPALLRPGRF 195 (539)
Q Consensus 143 ~~~~~~~~~~~~~~l~~ll~~ld~~--------------------------~~~~~vi-vIaatn~~~~ld~al~r~gRf 195 (539)
.+.|+..|+.. ..+.++. +++||+.|+.+++++++ |+
T Consensus 192 --------------q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~ 255 (531)
T TIGR02902 192 --------------MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC 255 (531)
T ss_pred --------------HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh
Confidence 22333332210 0112344 45566789999999998 86
Q ss_pred ceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 009263 196 DRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 196 ~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
..+.+++++.+++.+|++..+++..+.-+.+ ++.++..+. +++++.++++.|...|..+++..|+.+|++.++..-
T Consensus 256 -~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 256 -VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred -heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 4788999999999999999998766442222 455555443 799999999999999988888899999999998754
Q ss_pred hc
Q 009263 275 TV 276 (539)
Q Consensus 275 ~~ 276 (539)
..
T Consensus 333 ~~ 334 (531)
T TIGR02902 333 NY 334 (531)
T ss_pred cc
Confidence 33
No 68
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.70 E-value=1.9e-15 Score=157.31 Aligned_cols=221 Identities=24% Similarity=0.294 Sum_probs=149.5
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC---------CCEEEEeCch
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGSE 94 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---------~~~~~~~~~~ 94 (539)
..++++|.++.++.|...+...... ..+.+++|+||||||||++++++++++. .++++++|..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3368999999999888877642211 3456799999999999999999998652 5678888765
Q ss_pred hhHH----------Hh--hh-------h-hHHHHHHHHHHH-hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHH
Q 009263 95 FVEV----------LV--GV-------G-SARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 153 (539)
Q Consensus 95 ~~~~----------~~--g~-------~-~~~~~~~f~~a~-~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (539)
..+. .. +. . ......++.... ...+.||+|||+|.+....
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------------- 145 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------------- 145 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-------------------
Confidence 3321 11 10 0 112233444333 2456799999999986221
Q ss_pred HHHHHHHHHHhcC-CCCCCcEEEEEecCCCC---cCCccccCCCccc-eeeecCCCCHHHHHHHHHHHhccC----CCCC
Q 009263 154 ETTLNQLLIELDG-FDTGKGVIFLAATNRRD---LLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKV----KMSD 224 (539)
Q Consensus 154 ~~~l~~ll~~ld~-~~~~~~vivIaatn~~~---~ld~al~r~gRf~-~~i~v~~P~~~er~~il~~~l~~~----~~~~ 224 (539)
...+..++...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..+... .+.+
T Consensus 146 ~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~ 223 (365)
T TIGR02928 146 DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDD 223 (365)
T ss_pred cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCCh
Confidence 1234445443211 12235788888998876 47777777 665 679999999999999999888521 1111
Q ss_pred CC-C-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 009263 225 SV-D-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 225 ~~-~-~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
+. + +..++..+.| ..+.+..+|+.|...|..++...|+.+|+..|++.+
T Consensus 224 ~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 224 GVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred hHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 11 0 2234444556 577778889999999998888899999999999876
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.9e-16 Score=169.63 Aligned_cols=207 Identities=18% Similarity=0.251 Sum_probs=151.2
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
+..+++|.+|+||+|++.+++.|.+.+..- +.+..+||+||||||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 567899999999999999999998877532 345578999999999999999999988653
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.++... ..+...++++.+.+.. ....|++|||+|.+..
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------- 133 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------- 133 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------
Confidence 33333321 1233446666655432 2346999999999753
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-C
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~ 226 (539)
..+|.|+..|+. ++..+.+|.+|+.+..+.+.+++ |+ ..++|.+++.++....++..+.+.+...+ .
T Consensus 134 -------~a~naLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~ 201 (509)
T PRK14958 134 -------HSFNALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA 201 (509)
T ss_pred -------HHHHHHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 235678887774 44567777788888888888887 64 57789999999888888888876654422 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..++..+.| +.+++.+++..+..+ +...|+.+++...+
T Consensus 202 al~~ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 202 ALDLLARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 36677877766 899999999877543 34568888887664
No 70
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=6.1e-16 Score=160.33 Aligned_cols=208 Identities=19% Similarity=0.285 Sum_probs=148.1
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
+.++++|.+|++|+|++.+++.|.+.+..- +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 567789999999999999999988766421 345678999999999999999999988642
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.+++.. ......++.+...+.. ....|++|||+|.+..
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--------------- 133 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--------------- 133 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------
Confidence 11121110 0122345555554432 2345999999998742
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CC
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SV 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~ 226 (539)
...+.|+..++. ++..+.+|.+|+.++.+.+++.+ |+ ..++|++|+.++..++++..++..+..- +.
T Consensus 134 -------~a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~ 201 (363)
T PRK14961 134 -------HSFNALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY 201 (363)
T ss_pred -------HHHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 234567777764 34566677777878889888887 75 5789999999999999998887655332 22
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
.+..++..+.| +++++.+++..+... +...|+.+++.+++.
T Consensus 202 al~~ia~~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 202 ALKLIAYHAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 36667777766 788888888776543 456799988887764
No 71
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=4.8e-16 Score=165.86 Aligned_cols=221 Identities=23% Similarity=0.270 Sum_probs=148.5
Q ss_pred CCCcCcCcc-cCcHH--HHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEe
Q 009263 20 STGVKFSDV-AGIDE--AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA 91 (539)
Q Consensus 20 ~~~~~~~dv-~G~~~--~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~ 91 (539)
.+..+|++. +|... +...+..+ ...+. ...++++||||||+|||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~---~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAV---AENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHH---HhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 356789994 45332 23333332 22221 233569999999999999999999987 56688999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
+.+|...+...........|.... ..+++|+|||+|.+.++.. ..++...+++.+. ...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~l~-------~~~ 244 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKER-------------TQEEFFHTFNALH-------EAG 244 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHH-------HCC
Confidence 998877654433222222333322 2577999999999865421 1112222333332 222
Q ss_pred cEEEEEecCCCCc---CCccccCCCccc--eeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCCCHHHHHH
Q 009263 172 GVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQ 245 (539)
Q Consensus 172 ~vivIaatn~~~~---ld~al~r~gRf~--~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~dl~~ 245 (539)
..+||+++..|.. +++.+.+ ||. .++.+++|+.++|.+|++..+...++.-+ ..++.++....| +.+.|..
T Consensus 245 ~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~ 321 (450)
T PRK00149 245 KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEG 321 (450)
T ss_pred CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHH
Confidence 3466656666654 6788888 885 58999999999999999999876443322 227778888777 8999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 246 LVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 246 lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
+++....++...+ ..||.+.+.+++....
T Consensus 322 ~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 322 ALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 9999988876655 5699999999998764
No 72
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.69 E-value=8.4e-16 Score=162.13 Aligned_cols=206 Identities=24% Similarity=0.415 Sum_probs=144.8
Q ss_pred eecCCCCcCcCcccCcHHHHHH---HHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEE---LQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~---L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
|.+..+|.+|+|++|++.+... |..++. . ..+.+++|+||||||||++|+++|+..+.+|+.+++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~---~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIE---A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHH---c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3456788999999999999766 655553 1 123479999999999999999999999999999987
Q ss_pred chhhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 168 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 168 (539)
... +...++.++..+. .....||||||+|.+.... .+.|+..++.
T Consensus 70 ~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~----------------------q~~LL~~le~-- 118 (413)
T PRK13342 70 VTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ----------------------QDALLPHVED-- 118 (413)
T ss_pred ccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH----------------------HHHHHHHhhc--
Confidence 642 1234455555543 2256799999999875321 2344444432
Q ss_pred CCCcEEEEEec--CCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCC--C-C-CCCCHHHHHhhCCCCCHHH
Q 009263 169 TGKGVIFLAAT--NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK--M-S-DSVDLSSYAKNLPGWTGAR 242 (539)
Q Consensus 169 ~~~~vivIaat--n~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~--~-~-~~~~~~~la~~t~g~s~~d 242 (539)
..+++|++| |....+++++++ |+ ..+.+++|+.++...+++..+.... + . .+..+..+++.+.| ..+.
T Consensus 119 --~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~ 192 (413)
T PRK13342 119 --GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARR 192 (413)
T ss_pred --CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHH
Confidence 346666654 334478999998 77 6889999999999999998775421 1 1 11125677777755 6777
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 243 LAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 243 l~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
+.+++..+... ...|+.+++..++....
T Consensus 193 aln~Le~~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 193 ALNLLELAALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHHHHHHHc-----cCCCCHHHHHHHHhhhh
Confidence 77777766543 45799999999987653
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=4.6e-16 Score=169.00 Aligned_cols=207 Identities=20% Similarity=0.290 Sum_probs=150.1
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
+..+++|.+|+||+|++.+++.|.+.+..- +.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 456789999999999999999888776532 345568999999999999999999988652
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.++... ..+...++++...+. .....|+||||+|.|..
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~--------------- 133 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR--------------- 133 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------
Confidence 12222211 012334555555443 22446999999999753
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-C
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~ 226 (539)
..+|.||..|+. ++..+++|.+|+.+..|.+.+++ | +..++|..++.++....++..+...++..+ .
T Consensus 134 -------~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--R-C~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~ 201 (647)
T PRK07994 134 -------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--R-CLQFHLKALDVEQIRQQLEHILQAEQIPFEPR 201 (647)
T ss_pred -------HHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--h-heEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 346788888873 55677788888889999999998 7 578999999999999999988866544322 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..++..+.| +.++..+++..+... +...|+.+++...+
T Consensus 202 aL~~Ia~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 202 ALQLLARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 35677888777 788988888776533 23457776666554
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=5.7e-16 Score=167.53 Aligned_cols=207 Identities=22% Similarity=0.322 Sum_probs=151.4
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCE--------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------- 87 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-------- 87 (539)
+..++++.+|+||+|++.+++.|.+.+.. -+.+.++||+||+|+|||++|+++|+.++++-
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 55678999999999999999999887652 14567899999999999999999999876431
Q ss_pred ----------------EEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 88 ----------------YQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 88 ----------------~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
+.++.. ...+...+++++..+.. ....|+||||+|.+..
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~--------------- 133 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK--------------- 133 (709)
T ss_pred ccHHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------
Confidence 111111 11233456676665432 2346999999998642
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-C
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~ 226 (539)
..++.||..|+. .+..+.+|++|+.+..+.+.+++ |+ ..+.|+.++.++....++..+.+.++.-+ .
T Consensus 134 -------~A~NALLKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e 201 (709)
T PRK08691 134 -------SAFNAMLKTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP 201 (709)
T ss_pred -------HHHHHHHHHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH
Confidence 235678888764 34567777788888888888887 75 57888999999999999998887655422 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..|++.+.| +.+++.+++..+..+ +...|+.+++...+
T Consensus 202 AL~~Ia~~A~G-slRdAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 202 ALQLLGRAAAG-SMRDALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 26778888866 899999999887754 23467777776664
No 75
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=6.6e-16 Score=170.10 Aligned_cols=210 Identities=19% Similarity=0.246 Sum_probs=145.0
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCE-------E
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------Y 88 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-------~ 88 (539)
+..+++|.+|++|+|++.+++.|++.+..- +.+..+||+||||||||++|+++|+.+++.- .
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 445789999999999999999988776532 3455679999999999999999999987531 1
Q ss_pred EE-eCchhhHH-------Hh---hhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHH
Q 009263 89 QM-AGSEFVEV-------LV---GVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 153 (539)
Q Consensus 89 ~~-~~~~~~~~-------~~---g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (539)
.+ +|..+... +. ..+...+|.+...+.. ....|+||||+|.|..
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~--------------------- 133 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR--------------------- 133 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------------
Confidence 10 00000000 00 0122345555544431 2346999999999842
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHH
Q 009263 154 ETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYA 232 (539)
Q Consensus 154 ~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la 232 (539)
..+|.||..|+. ++..+++|++|+.+..|.+.+++ |+ .++.|++++.++....|++.+...++..+ ..+..++
T Consensus 134 -eAqNALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA 207 (944)
T PRK14949 134 -SSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA 207 (944)
T ss_pred -HHHHHHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 356788888874 45567777788888889889888 64 68999999999999999988876443322 2267778
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHH
Q 009263 233 KNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 268 (539)
Q Consensus 233 ~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~ 268 (539)
..+.| +.+++.+++..+... +...++.+.+.
T Consensus 208 ~~S~G-d~R~ALnLLdQala~----~~~~It~~~V~ 238 (944)
T PRK14949 208 KAANG-SMRDALSLTDQAIAF----GGGQVMLTQVQ 238 (944)
T ss_pred HHcCC-CHHHHHHHHHHHHHh----cCCcccHHHHH
Confidence 88877 789999998877732 22345555443
No 76
>PLN03025 replication factor C subunit; Provisional
Probab=99.68 E-value=1.1e-15 Score=155.90 Aligned_cols=205 Identities=19% Similarity=0.206 Sum_probs=136.1
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC-----CCEEE
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQ 89 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~~ 89 (539)
.|.++++|.+|+|++|++++++.|+.++..- .. .++||+||||||||++|+++|+++. ..++.
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-----------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG-----------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 3778899999999999999999888765421 11 2589999999999999999999973 23556
Q ss_pred EeCchhhHHHhhhhhHHHHHHHHHH---H----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHH
Q 009263 90 MAGSEFVEVLVGVGSARIRDLFKRA---K----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 162 (539)
Q Consensus 90 ~~~~~~~~~~~g~~~~~~~~~f~~a---~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 162 (539)
++.++... ...++..+... . ...+.|++|||+|.+.... .+.|+.
T Consensus 70 ln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a----------------------q~aL~~ 121 (319)
T PLN03025 70 LNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA----------------------QQALRR 121 (319)
T ss_pred eccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH----------------------HHHHHH
Confidence 66654322 11233332221 1 1235799999999975432 233444
Q ss_pred HhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHHhhCCCCCHH
Q 009263 163 ELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGA 241 (539)
Q Consensus 163 ~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~~~~~la~~t~g~s~~ 241 (539)
.++.. +....+|.+||.+..+.+++++ |+ ..++|++|+.++....++..+.+.++.- +..+..++....| +.+
T Consensus 122 ~lE~~--~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR 195 (319)
T PLN03025 122 TMEIY--SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMR 195 (319)
T ss_pred HHhcc--cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 44432 2334566688888888889988 64 5889999999999999998887655432 2236777777655 444
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHH
Q 009263 242 RLAQLVQEAALVAVRKGHESILSSDMDDA 270 (539)
Q Consensus 242 dl~~lv~~A~~~A~~~~~~~I~~~d~~~a 270 (539)
.+.+.++ ..+ .+...|+.+++...
T Consensus 196 ~aln~Lq---~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 196 QALNNLQ---ATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHHHHH---HHH--hcCCCCCHHHHHHH
Confidence 4444444 222 23446887776644
No 77
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.68 E-value=1.8e-15 Score=155.76 Aligned_cols=215 Identities=22% Similarity=0.304 Sum_probs=139.8
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC-----CCEE
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFY 88 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~ 88 (539)
.+|.+++.|.+|++++|++.+++.|..++.. + ...+++|+||||||||++|+++++++. .+++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~---~---------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS---P---------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC---C---------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 3688889999999999999999998877641 1 123699999999999999999999873 3577
Q ss_pred EEeCchhhHHH-------------hhh-------hhHHHHHHHHHHHh-----CCCeEEEEeCcchhhhhhcCCcCCchh
Q 009263 89 QMAGSEFVEVL-------------VGV-------GSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTD 143 (539)
Q Consensus 89 ~~~~~~~~~~~-------------~g~-------~~~~~~~~f~~a~~-----~~p~Il~iDEiD~l~~~~~~~~~~~~~ 143 (539)
+++++++.... .+. ....++.+...... ..+.+|+|||+|.+....
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~--------- 141 (337)
T PRK12402 71 EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA--------- 141 (337)
T ss_pred EechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH---------
Confidence 88887654221 010 01223333322222 234699999999874321
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC
Q 009263 144 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS 223 (539)
Q Consensus 144 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~ 223 (539)
.+.|...++... ....+|.+++.+..+.+.+.+ |+ ..+.+++|+.++...+++..+.+.+..
T Consensus 142 -------------~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~ 203 (337)
T PRK12402 142 -------------QQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVD 203 (337)
T ss_pred -------------HHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 123333343322 223445566666677777877 64 578999999999999999988766544
Q ss_pred -CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 009263 224 -DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 273 (539)
Q Consensus 224 -~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~ 273 (539)
.+..+..++..+.| +.+. +++.....+. +...||.+++.+++..
T Consensus 204 ~~~~al~~l~~~~~g-dlr~---l~~~l~~~~~--~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 204 YDDDGLELIAYYAGG-DLRK---AILTLQTAAL--AAGEITMEAAYEALGD 248 (337)
T ss_pred CCHHHHHHHHHHcCC-CHHH---HHHHHHHHHH--cCCCCCHHHHHHHhCC
Confidence 22236777777754 4444 4444444442 2246999998876643
No 78
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=1.2e-15 Score=161.34 Aligned_cols=223 Identities=17% Similarity=0.207 Sum_probs=146.8
Q ss_pred CCCcCcCccc-CcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 009263 20 STGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGS 93 (539)
Q Consensus 20 ~~~~~~~dv~-G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~~ 93 (539)
.+..+|++.+ |-.. ......+.....++. ..++++||||||+|||+|++++++++ +..++++++.
T Consensus 99 ~~~~tFdnFv~g~~n-~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 99 NPDYTFENFVVGPGN-SFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCcccccccCCch-HHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 3567899966 5332 222222223333331 13469999999999999999999986 4578899998
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcE
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 173 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 173 (539)
+|...+.......-..-|.......+++|+|||++.+.++.. ...+...+++.+. .....
T Consensus 170 ~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~-------------~q~elf~~~n~l~-------~~~k~ 229 (440)
T PRK14088 170 KFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTG-------------VQTELFHTFNELH-------DSGKQ 229 (440)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHH-------------HHHHHHHHHHHHH-------HcCCe
Confidence 887765433211111223333334678999999998754321 1122223333332 22334
Q ss_pred EEEEecCCCCc---CCccccCCCcc--ceeeecCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHHhhCCCCCHHHHHHHH
Q 009263 174 IFLAATNRRDL---LDPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLV 247 (539)
Q Consensus 174 ivIaatn~~~~---ld~al~r~gRf--~~~i~v~~P~~~er~~il~~~l~~~~~~~~~-~~~~la~~t~g~s~~dl~~lv 247 (539)
+|+++.+.|.. +.+.+.+ || ..++.+++|+.+.|..|++..+....+.-+. .+..++....| +.++|+.++
T Consensus 230 iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l 306 (440)
T PRK14088 230 IVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAI 306 (440)
T ss_pred EEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHH
Confidence 66655566665 4567777 66 4588999999999999999988754433222 27777887776 899999999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 248 QEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 248 ~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
+.....+...+ ..||.+.+.+++....
T Consensus 307 ~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 307 IKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 99887776655 5699999999998764
No 79
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.67 E-value=2.1e-15 Score=153.88 Aligned_cols=169 Identities=22% Similarity=0.290 Sum_probs=120.3
Q ss_pred cccchhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEE
Q 009263 9 SFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 88 (539)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~ 88 (539)
.|....+|.++++|.+|++++|++++++.+..++.. ...|..+||+||||+|||++|++++++.+.+++
T Consensus 4 ~~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 4 VNPNEFMWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred cCCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 456678999999999999999999999988877651 134556777999999999999999999999999
Q ss_pred EEeCchhhHHHhhhhhHHHHHHHHHHH-hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC
Q 009263 89 QMAGSEFVEVLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 167 (539)
Q Consensus 89 ~~~~~~~~~~~~g~~~~~~~~~f~~a~-~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 167 (539)
.+++++ .. .......+........ ...++||+|||+|.+.... ....+..+ ++.
T Consensus 73 ~i~~~~-~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~------------------~~~~L~~~---le~- 127 (316)
T PHA02544 73 FVNGSD-CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD------------------AQRHLRSF---MEA- 127 (316)
T ss_pred EeccCc-cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHH------------------HHHHHHHH---HHh-
Confidence 998876 11 1111111222111111 1356799999999873211 12233333 332
Q ss_pred CCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHh
Q 009263 168 DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 217 (539)
Q Consensus 168 ~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l 217 (539)
.+.++.+|++||.+..+++++++ ||. .+.++.|+.+++..+++.++
T Consensus 128 -~~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 128 -YSKNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred -cCCCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 23456778899999999999998 874 78899999999988876543
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.1e-15 Score=165.70 Aligned_cols=208 Identities=19% Similarity=0.300 Sum_probs=150.4
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC--------
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------- 86 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------- 86 (539)
.|..++++.+|+||+|++.+++.|.+.+..- +.+..+||+||+|+|||++|+++|+.+++.
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 4667899999999999999999998876632 345568999999999999999999988641
Q ss_pred ---------------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCc
Q 009263 87 ---------------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDT 141 (539)
Q Consensus 87 ---------------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~ 141 (539)
++.++... ..+...++++.+.+... ...|++|||+|.+..
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------- 138 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------- 138 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------
Confidence 11221111 11234566666655322 235999999999753
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCC
Q 009263 142 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK 221 (539)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~ 221 (539)
..+|.|+..++. .+..+.+|.+|+.+..+.+.+++ |+ ..++|..++.++..+.++..+.+.+
T Consensus 139 -------------~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 139 -------------TAFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred -------------HHHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcC
Confidence 236778887763 44567777788888888888887 64 7889999999999999998887665
Q ss_pred CCCCC-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 222 MSDSV-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 222 ~~~~~-~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
+..+. .+..++..+.| +.+++.+++..+..+ +...|+.+++.+.+
T Consensus 201 i~ie~~AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 201 VPAEPQALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 54332 26778888877 888888888776654 33467877776654
No 81
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.67 E-value=6.4e-15 Score=154.97 Aligned_cols=223 Identities=22% Similarity=0.272 Sum_probs=149.9
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhh
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFV 96 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~~~~~ 96 (539)
....+.++|.++..++|...+...... ..+.+++|+||||||||++++.+++++ +..++++++....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 345578999999988888777532211 234578999999999999999999877 5778899886432
Q ss_pred HH----------Hhh-------hhhH-HHHHHHHHHHh-CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHH
Q 009263 97 EV----------LVG-------VGSA-RIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 157 (539)
Q Consensus 97 ~~----------~~g-------~~~~-~~~~~f~~a~~-~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (539)
+. ..+ .... .+..+...... ..+.||+|||+|.+..... ...+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~------------------~~~l 159 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG------------------NDVL 159 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC------------------chHH
Confidence 21 111 0111 12222222222 3467999999999872211 1345
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCCCC---cCCccccCCCccc-eeeecCCCCHHHHHHHHHHHhccCC---CCCCCCHHH
Q 009263 158 NQLLIELDGFDTGKGVIFLAATNRRD---LLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVK---MSDSVDLSS 230 (539)
Q Consensus 158 ~~ll~~ld~~~~~~~vivIaatn~~~---~ld~al~r~gRf~-~~i~v~~P~~~er~~il~~~l~~~~---~~~~~~~~~ 230 (539)
..++..++... ..++.+|+++|..+ .+++.+.+ ||. ..|.|++++.++..+|++..+.... .-.+..++.
T Consensus 160 ~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 236 (394)
T PRK00411 160 YSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDL 236 (394)
T ss_pred HHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHH
Confidence 55655554433 23677888888654 46676666 553 5789999999999999998875321 111222455
Q ss_pred HHhhC---CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 009263 231 YAKNL---PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 231 la~~t---~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
+++.+ .| ..+.+..++..|...|..++...|+.+|+..|++.+
T Consensus 237 i~~~~~~~~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 237 IADLTAREHG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 56555 34 456667888999999998898999999999999876
No 82
>PRK06893 DNA replication initiation factor; Validated
Probab=99.66 E-value=5.2e-15 Score=143.61 Aligned_cols=213 Identities=11% Similarity=0.122 Sum_probs=133.9
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
.-.++.+|++.+|.+... .+..+.+... ......++||||||||||+|++++|+++ +....+++...
T Consensus 8 ~~~~~~~fd~f~~~~~~~-~~~~~~~~~~---------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL-LLDSLRKNFI---------DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCCcccccccccCChHH-HHHHHHHHhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 345778999999766432 1111111111 1122358999999999999999999986 44556665543
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
.... ....+... .++++|+|||++.+.++.. ....+..++..+. .....++
T Consensus 78 ~~~~--------~~~~~~~~--~~~dlLilDDi~~~~~~~~-----------------~~~~l~~l~n~~~--~~~~~il 128 (229)
T PRK06893 78 SQYF--------SPAVLENL--EQQDLVCLDDLQAVIGNEE-----------------WELAIFDLFNRIK--EQGKTLL 128 (229)
T ss_pred hhhh--------hHHHHhhc--ccCCEEEEeChhhhcCChH-----------------HHHHHHHHHHHHH--HcCCcEE
Confidence 2111 11223322 2457999999998754321 1222333333321 1223345
Q ss_pred EEEecCCCCcCC---ccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHH
Q 009263 175 FLAATNRRDLLD---PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEA 250 (539)
Q Consensus 175 vIaatn~~~~ld---~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A 250 (539)
+++++..|..++ +.+.++.+++..+.++.|+.++|.+|++..+....+..+.+ +..+++...| +.+.+.++++..
T Consensus 129 lits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 129 LISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred EEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 566666677654 78888455567999999999999999998886554433322 6778888877 788999888876
Q ss_pred HHHHHHhCCCCCchhhHHHHH
Q 009263 251 ALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 251 ~~~A~~~~~~~I~~~d~~~a~ 271 (539)
...+..++ ..||...+++++
T Consensus 208 ~~~~~~~~-~~it~~~v~~~L 227 (229)
T PRK06893 208 DKASLQAQ-RKLTIPFVKEIL 227 (229)
T ss_pred HHHHHhcC-CCCCHHHHHHHh
Confidence 54444334 468888887765
No 83
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.66 E-value=1.4e-15 Score=172.17 Aligned_cols=219 Identities=19% Similarity=0.255 Sum_probs=150.3
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEE
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQ 89 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~ 89 (539)
..+-++++++|+++...++.+++ ... ...+++|+||||||||++|+.+|..+ +..++.
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l---~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDIL---LRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHH---hcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 35668999999999755544433 222 23478999999999999999999976 244677
Q ss_pred EeCchhhH--HHhhhhhHHHHHHHHHHHh-CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC
Q 009263 90 MAGSEFVE--VLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 166 (539)
Q Consensus 90 ~~~~~~~~--~~~g~~~~~~~~~f~~a~~-~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 166 (539)
++.+.+.. .+.|..+.+++.+|..+.. ..++||||||||.+.+.+.+.. . ...-|-|+..+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~-------------~d~~n~Lkp~l-- 312 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-Q-------------GDAANLLKPAL-- 312 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-c-------------ccHHHHhhHHh--
Confidence 77776653 5778888999999998865 4678999999999987543210 0 01112233333
Q ss_pred CCCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-----CCCCHHHHHhhCC
Q 009263 167 FDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----DSVDLSSYAKNLP 236 (539)
Q Consensus 167 ~~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-----~~~~~~~la~~t~ 236 (539)
.+..+.+|+||+..+ .+|++|.| ||. .|.++.|+.+++..||+.+....... .+..+..++..+.
T Consensus 313 --~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ 387 (852)
T TIGR03345 313 --ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSH 387 (852)
T ss_pred --hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcc
Confidence 346789999998643 48999999 996 79999999999999987666543321 1222566666666
Q ss_pred CCC-----HHHHHHHHHHHHHHHHHh-CCCCCchhhHHHHH
Q 009263 237 GWT-----GARLAQLVQEAALVAVRK-GHESILSSDMDDAV 271 (539)
Q Consensus 237 g~s-----~~dl~~lv~~A~~~A~~~-~~~~I~~~d~~~a~ 271 (539)
+|. |.....++.+|+.....+ ....+..+++.+.+
T Consensus 388 ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 388 RYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 553 556667788887655433 34445555555444
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.65 E-value=7.4e-15 Score=142.60 Aligned_cols=202 Identities=14% Similarity=0.144 Sum_probs=133.9
Q ss_pred CCCcCcCccc--CcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 20 STGVKFSDVA--GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 20 ~~~~~~~dv~--G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
.++.+|++++ +.+.+...++++.. +...+.+++|+||+|||||+||+++++++ +.+++++++..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 4568899977 33455555554433 12345689999999999999999999875 67888888877
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
+.... . ....+.+|+|||+|.+.... ...+..++..+ ......+
T Consensus 81 ~~~~~------------~--~~~~~~~liiDdi~~l~~~~-------------------~~~L~~~~~~~---~~~~~~~ 124 (227)
T PRK08903 81 PLLAF------------D--FDPEAELYAVDDVERLDDAQ-------------------QIALFNLFNRV---RAHGQGA 124 (227)
T ss_pred hHHHH------------h--hcccCCEEEEeChhhcCchH-------------------HHHHHHHHHHH---HHcCCcE
Confidence 54321 1 12345699999999864321 12233333332 2233333
Q ss_pred EEEecCC-CC--cCCccccCCCcc--ceeeecCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHHhhCCCCCHHHHHHHHH
Q 009263 175 FLAATNR-RD--LLDPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQ 248 (539)
Q Consensus 175 vIaatn~-~~--~ld~al~r~gRf--~~~i~v~~P~~~er~~il~~~l~~~~~~~~~-~~~~la~~t~g~s~~dl~~lv~ 248 (539)
+|.+++. +. .+.+.+.+ || ...+.+++|+.+++..++...+....+.-+. -+..++...+| +.+++.++++
T Consensus 125 vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~ 201 (227)
T PRK08903 125 LLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLD 201 (227)
T ss_pred EEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 4444443 32 24566666 66 5799999999999999998877655443222 26777887666 8999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHH
Q 009263 249 EAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 249 ~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
....+|...+ ..||...+.+++.
T Consensus 202 ~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 202 ALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHh
Confidence 8766665544 6899988888764
No 85
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.65 E-value=6.5e-16 Score=173.12 Aligned_cols=188 Identities=22% Similarity=0.335 Sum_probs=135.1
Q ss_pred ccccccccccchhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHH
Q 009263 2 LIQIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 81 (539)
|++++|+.+...+..-.....+--++..|++++|+++.+++....... ...+..++|+||||+|||++++.+|+
T Consensus 298 ~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 298 MVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred HHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 466788766655544444444545669999999999998877533221 12334699999999999999999999
Q ss_pred hcCCCEEEEeCchhhH---------HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhH
Q 009263 82 EAGVPFYQMAGSEFVE---------VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 152 (539)
Q Consensus 82 ~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 152 (539)
.++.+++.++.+...+ .|.|.....+...+..+....| |++|||||.+....++
T Consensus 372 ~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g---------------- 434 (784)
T PRK10787 372 ATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG---------------- 434 (784)
T ss_pred HhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----------------
Confidence 9999999887665432 2445555566666666655556 8999999998765321
Q ss_pred HHHHHHHHHHHhcC-----CC--------CCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhc
Q 009263 153 RETTLNQLLIELDG-----FD--------TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 218 (539)
Q Consensus 153 ~~~~l~~ll~~ld~-----~~--------~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~ 218 (539)
.....|+..+|. |. .-+++++|+|+|.. .++++|++ ||. .|.++.++.++..+|.+.++.
T Consensus 435 --~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 435 --DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred --CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 112344544442 11 12678999999987 59999999 995 789999999999999998884
No 86
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=4.1e-15 Score=159.49 Aligned_cols=191 Identities=20% Similarity=0.271 Sum_probs=135.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 134 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~ 134 (539)
+.++|||++|+|||+|++++++++ +..++++++.+|...+...........|.... ..+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 459999999999999999999976 56789999999887765543333333444332 356899999999986543
Q ss_pred cCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CC---cCCccccCCCcc--ceeeecCCCCHHH
Q 009263 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RD---LLDPALLRPGRF--DRKIRIRAPNAKG 208 (539)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~-~~---~ld~al~r~gRf--~~~i~v~~P~~~e 208 (539)
. ...+...++|.+. ....-+|| |+|. |. .+++.|.+ || ..++.+..|+.+.
T Consensus 394 ~-------------tqeeLF~l~N~l~-------e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 394 S-------------TQEEFFHTFNTLH-------NANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELET 450 (617)
T ss_pred H-------------HHHHHHHHHHHHH-------hcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHH
Confidence 1 1222233344333 22233444 5554 43 46788998 66 5588999999999
Q ss_pred HHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 209 RTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 209 r~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
|..||+..+....+..+.+ +..|+....+ +.+.|+.+++....++...+ ..|+.+.+.+++..+..
T Consensus 451 R~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 451 RIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 9999999988766554333 6777777766 79999999999887776655 56999999998876543
No 87
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.7e-15 Score=158.55 Aligned_cols=206 Identities=22% Similarity=0.287 Sum_probs=151.7
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC-----------
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----------- 85 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~----------- 85 (539)
..+++|.+|+||+|++.+++.|.+.+.. -+.+.++||+||+|+|||++|+.+|+.+++
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 3468999999999999999988766542 245678999999999999999999997632
Q ss_pred -------------CEEEEeCchhhHHHhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhhhh
Q 009263 86 -------------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNA 148 (539)
Q Consensus 86 -------------~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~ 148 (539)
.++.+++++ ..+...++.+.+.+... ...|++|||+|.+..
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------- 130 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------- 130 (491)
T ss_pred cHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH----------------
Confidence 234444432 12334567776665422 346999999998742
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CC
Q 009263 149 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VD 227 (539)
Q Consensus 149 ~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~ 227 (539)
..+|.|+..++. ++..+++|.+|+.++.+.+.+++ |+ ..+.|.+++.++....+...+.+.+..-+ ..
T Consensus 131 ------~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eA 199 (491)
T PRK14964 131 ------SAFNALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEES 199 (491)
T ss_pred ------HHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHH
Confidence 346788888874 44567777788888889888888 65 57899999999999999988877654422 23
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 228 LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 228 ~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
+..+++.+.| +.+++.+++..+..++ ...||.+++.+.+
T Consensus 200 L~lIa~~s~G-slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 200 LKLIAENSSG-SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 6677888866 8899999988877654 2468888887654
No 88
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.64 E-value=2.1e-15 Score=145.53 Aligned_cols=194 Identities=23% Similarity=0.294 Sum_probs=133.0
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC------EE
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------FY 88 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~------~~ 88 (539)
-|.+++.|.+|++++|++.+++.|.+.+.. + ...++|||||||||||+.|+++|+++..+ +.
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 478899999999999999999999887654 1 22368999999999999999999999663 23
Q ss_pred EEeCchhhHHHhhhhhHHHHHHHHHHHh---------CCC-eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHH
Q 009263 89 QMAGSEFVEVLVGVGSARIRDLFKRAKV---------NKP-SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 158 (539)
Q Consensus 89 ~~~~~~~~~~~~g~~~~~~~~~f~~a~~---------~~p-~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (539)
..+.++.....+. ..++ .-|..... +.| .|++|||.|.+... ..+
T Consensus 93 ~lnaSderGisvv--r~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd----------------------aq~ 147 (346)
T KOG0989|consen 93 ELNASDERGISVV--REKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD----------------------AQA 147 (346)
T ss_pred hhcccccccccch--hhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH----------------------HHH
Confidence 3444444332211 1111 11222211 112 59999999998643 344
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCC
Q 009263 159 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPG 237 (539)
Q Consensus 159 ~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g 237 (539)
.|...|+.+ ...+.+|..||..+.+...+.+ |. ..+.|+....+.....|+....+.++.-+.+ +..++..+.|
T Consensus 148 aLrr~mE~~--s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 148 ALRRTMEDF--SRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred HHHHHHhcc--ccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 666667653 3456777789999999999998 75 4677887777777788888887776664444 6777777777
Q ss_pred CCHHHHHHHHHHHH
Q 009263 238 WTGARLAQLVQEAA 251 (539)
Q Consensus 238 ~s~~dl~~lv~~A~ 251 (539)
+-++....++.+.
T Consensus 223 -dLR~Ait~Lqsls 235 (346)
T KOG0989|consen 223 -DLRRAITTLQSLS 235 (346)
T ss_pred -cHHHHHHHHHHhh
Confidence 4555555544443
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.64 E-value=7.3e-15 Score=142.39 Aligned_cols=205 Identities=16% Similarity=0.215 Sum_probs=134.6
Q ss_pred CCcCcCccc--CcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009263 21 TGVKFSDVA--GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 95 (539)
Q Consensus 21 ~~~~~~dv~--G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~ 95 (539)
.+.+|++.+ +.+.+.+.+++++. ...+.+++|+||||||||++|+++++.+ +.+++++++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 446777776 34456666665532 1345689999999999999999999876 578899998887
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEE
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 175 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viv 175 (539)
.... ...+... ..+.+|+|||+|.+.... .....+..++..+. .....+|
T Consensus 78 ~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~-----------------~~~~~L~~~l~~~~---~~~~~iI 127 (226)
T TIGR03420 78 AQAD--------PEVLEGL--EQADLVCLDDVEAIAGQP-----------------EWQEALFHLYNRVR---EAGGRLL 127 (226)
T ss_pred HHhH--------HHHHhhc--ccCCEEEEeChhhhcCCh-----------------HHHHHHHHHHHHHH---HcCCeEE
Confidence 6432 2223222 234599999999875321 01122333333322 1223344
Q ss_pred EEecCCCCcCC---ccccCCCcc--ceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCCCHHHHHHHHHH
Q 009263 176 LAATNRRDLLD---PALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQE 249 (539)
Q Consensus 176 Iaatn~~~~ld---~al~r~gRf--~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~dl~~lv~~ 249 (539)
+.++..+..++ +.+.+ |+ ...+.+|+|+.+++..+++.++....+.-+ ..+..++...+| +.+++.+++++
T Consensus 128 its~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~ 204 (226)
T TIGR03420 128 IAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDA 204 (226)
T ss_pred EECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 44444444432 56666 55 478999999999999999988765443322 226777776555 89999999999
Q ss_pred HHHHHHHhCCCCCchhhHHHHH
Q 009263 250 AALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 250 A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
+...+...+ ..|+.+.+.+.+
T Consensus 205 ~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 205 LDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHhC-CCCCHHHHHHHh
Confidence 887776655 568888877664
No 90
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.9e-15 Score=157.90 Aligned_cols=204 Identities=22% Similarity=0.319 Sum_probs=146.0
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC-----------
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 86 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----------- 86 (539)
.+++|.+|+||+|++.+++.|...+..- +.+..+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 6789999999999999999998877631 345567999999999999999999988531
Q ss_pred ------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhh
Q 009263 87 ------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 150 (539)
Q Consensus 87 ------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~ 150 (539)
++.++... ..+...++++...+.. ..+.||+|||+|.+..
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~------------------ 130 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK------------------ 130 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH------------------
Confidence 33333321 1123345555443322 3456999999987632
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCC-CHH
Q 009263 151 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLS 229 (539)
Q Consensus 151 ~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~-~~~ 229 (539)
..++.|+..++. .+..+++|.+|+.+..+.+.+.+ |+ ..++|++|+.++....++..+.+.++..+. .+.
T Consensus 131 ----~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~ 201 (504)
T PRK14963 131 ----SAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQ 201 (504)
T ss_pred ----HHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 346677777764 33466777788888899999988 64 478999999999999999988766554322 366
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 230 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 230 ~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.++..+.| +.+++.+++..+... ...||.+++.+.+
T Consensus 202 ~ia~~s~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 202 LVARLADG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 77777766 677777777765432 2468888877664
No 91
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=5.7e-15 Score=160.44 Aligned_cols=205 Identities=24% Similarity=0.312 Sum_probs=149.7
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC-----------
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 86 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----------- 86 (539)
.+++|.+|++|+|++.+++.|++.+..- +.+..+||+||+|||||++|+.+|+.++++
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 6789999999999999999998876632 345678999999999999999999987532
Q ss_pred -------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhh
Q 009263 87 -------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 149 (539)
Q Consensus 87 -------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~ 149 (539)
++.+++.. +.+...++++...+.. ....|++|||+|.+..
T Consensus 77 ~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~----------------- 133 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST----------------- 133 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------------
Confidence 23333221 1234456666666542 2346999999998742
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCH
Q 009263 150 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDL 228 (539)
Q Consensus 150 ~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~ 228 (539)
..+|.|+..++. ++..+++|.+|+.++.+.+.+++ |+ ..+.|++|+.++....+...+.+.++..+ ..+
T Consensus 134 -----~a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al 203 (559)
T PRK05563 134 -----GAFNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEAL 203 (559)
T ss_pred -----HHHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 246778887774 45567777778888999999988 75 46789999999999999988876654432 236
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 229 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 229 ~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
..++..+.| +.+++.+++..+..++ ...|+.+++..++
T Consensus 204 ~~ia~~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 204 RLIARAAEG-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 677777766 8888888888776553 3468877766553
No 92
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.2e-15 Score=158.00 Aligned_cols=208 Identities=20% Similarity=0.309 Sum_probs=146.5
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC----------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---------- 85 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---------- 85 (539)
+..+++|.+|++|+|++.+++.|...+..- +.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 556789999999999999999888776521 34556899999999999999999998754
Q ss_pred --------------CEEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 86 --------------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 86 --------------~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
.++.++... ..+...++.++..+.. ....|+||||+|.+..
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~--------------- 133 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK--------------- 133 (546)
T ss_pred ccHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------
Confidence 122222211 0122334555544432 2446999999998743
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-C
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~ 226 (539)
...+.||..++. ++..+++|++|+.+..+.+.+++ |+ ..++|.+++.++....++..+.+.++..+ .
T Consensus 134 -------~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~ 201 (546)
T PRK14957 134 -------QSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ 201 (546)
T ss_pred -------HHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 245677877773 44566677777778888888887 64 78999999999998888888776554322 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
.+..++..+.| +.+++.+++..+..++ + ..|+.+++.+++.
T Consensus 202 Al~~Ia~~s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~l~ 242 (546)
T PRK14957 202 SLEYIAYHAKG-SLRDALSLLDQAISFC---G-GELKQAQIKQMLG 242 (546)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHc
Confidence 25667777765 7888888888777543 2 4688888887654
No 93
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.5e-15 Score=160.52 Aligned_cols=206 Identities=17% Similarity=0.241 Sum_probs=146.4
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC-----------
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 86 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----------- 86 (539)
.+++|.+|+||+|++.+++.|+..+..- +.+..+||+||+|||||++|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 6789999999999999999988876521 345568999999999999999999987642
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.++++.. .+...++++...+.. ....|++|||+|.+..
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------------- 132 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------------- 132 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------
Confidence 122222110 123344554444321 2345999999998742
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD 227 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~ 227 (539)
...|.||..|+. .+..+++|++|+.++.+.+.+++ | +.+++|..++.++..+.+...+.+.+..-+.+
T Consensus 133 -------~A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~ 200 (584)
T PRK14952 133 -------AGFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDA 200 (584)
T ss_pred -------HHHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 246778888873 45677888888888899999988 7 56899999999999999988887765433222
Q ss_pred -HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 228 -LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 228 -~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
+..++..+.| +.+++.+++..+...+ +...|+.+++...+
T Consensus 201 al~~Ia~~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 201 VYPLVIRAGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 4556666655 8889888888876443 24567777766553
No 94
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.63 E-value=7.1e-15 Score=144.26 Aligned_cols=211 Identities=23% Similarity=0.349 Sum_probs=140.5
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---EEEEeCc
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGS 93 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~---~~~~~~~ 93 (539)
+.-++.+++|.+|+++...+ ..++.- ++.. .-..++||||||||||+||+.|+.....+ |+.++..
T Consensus 130 ermRPktL~dyvGQ~hlv~q-~gllrs~ieq~---------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN---------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhcCcchHHHhcchhhhcCc-chHHHHHHHcC---------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 44578899999999988655 333322 2211 12368999999999999999999988777 6777654
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhC-----CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVN-----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 168 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~-----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 168 (539)
. .....+|++|+.++.. ...|||||||++|....+. .||-. .
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD----------------------~fLP~----V 246 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD----------------------TFLPH----V 246 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh----------------------cccce----e
Confidence 3 2345678888887543 3459999999998765442 12211 2
Q ss_pred CCCcEEEEEec-CCCC-cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccC--------CCCC---CC---CHHHHH
Q 009263 169 TGKGVIFLAAT-NRRD-LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV--------KMSD---SV---DLSSYA 232 (539)
Q Consensus 169 ~~~~vivIaat-n~~~-~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~--------~~~~---~~---~~~~la 232 (539)
.+..|++|++| ..|. .|..+|++ | ++++.+...+.+....||.+...-. ++.. .+ -++.++
T Consensus 247 E~G~I~lIGATTENPSFqln~aLlS--R-C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla 323 (554)
T KOG2028|consen 247 ENGDITLIGATTENPSFQLNAALLS--R-CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLA 323 (554)
T ss_pred ccCceEEEecccCCCccchhHHHHh--c-cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHH
Confidence 34567888766 3344 68999998 6 4677888888898888887744311 1111 11 267888
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhC---CCCCchhhHHHHHHHH
Q 009263 233 KNLPGWTGARLAQLVQEAALVAVRKG---HESILSSDMDDAVDRL 274 (539)
Q Consensus 233 ~~t~g~s~~dl~~lv~~A~~~A~~~~---~~~I~~~d~~~a~~~~ 274 (539)
..+.|-..+.|..+--.+...+.|.+ +..++.+|+.+++.+-
T Consensus 324 ~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 324 YLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HhcCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 88888666555555333333344444 3478899999998764
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6.9e-15 Score=158.49 Aligned_cols=207 Identities=17% Similarity=0.230 Sum_probs=145.1
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
|..++++.+|+||+|++.+++.|.+.+..- +.+..+||+||||||||++|+.+|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 456789999999999999999998877521 234578999999999999999999988652
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.+++.. ..+...++.+.+.+. .....||||||+|.+..
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~--------------- 133 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR--------------- 133 (624)
T ss_pred ccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------
Confidence 33333221 011223333322221 23456999999999742
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CC
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SV 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~ 226 (539)
..++.|+..++. ....+++|++||.+..+.+.+++ |+ .++.|+.++.++...+|+..+......- +.
T Consensus 134 -------~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~e 201 (624)
T PRK14959 134 -------EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPA 201 (624)
T ss_pred -------HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 235677777764 34567788888888888888887 75 4789999999999999988877655432 22
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..++..+.| +.+++.+++.++. ..+...|+.+++..++
T Consensus 202 al~lIA~~s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 202 AVRLIARRAAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 36677777766 6777777776543 2344578888887765
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=4.6e-15 Score=160.09 Aligned_cols=208 Identities=19% Similarity=0.279 Sum_probs=150.0
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
+..+++|.+|+||+|++.+++.|.+.+..- +.+..+||+||||+|||++|+++|+.+++.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 556789999999999999999888776531 345578999999999999999999988652
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.+++.. ..+...++++...+.. ....|++|||+|.+..
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------------- 133 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------------- 133 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------
Confidence 11121110 1233456666666532 2345999999998742
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-C
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~ 226 (539)
...|.||..++. ++..+++|.+|+.+..+.+.+++ | +..++|+.++.++....+...+.+.++..+ .
T Consensus 134 -------~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--R-c~~~~f~~l~~~~i~~~L~~il~~egi~~~~~ 201 (527)
T PRK14969 134 -------SAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--R-CLQFNLKQMPPPLIVSHLQHILEQENIPFDAT 201 (527)
T ss_pred -------HHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--H-HHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 246778888874 44567777778888888878887 6 478999999999999888888766554322 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
.+..++..+.| +.+++.+++..+..+ +...|+.+++...+.
T Consensus 202 al~~la~~s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 202 ALQLLARAAAG-SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 25667777766 788999998887654 345688888777653
No 97
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.63 E-value=7.3e-15 Score=162.80 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=141.2
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
|....+|.+|+|++|++.+......+...+... ...+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 455678999999999999875422222222221 22478999999999999999999999999988876531
Q ss_pred hHHHhhhhhHHHHHHHHHHH-----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 009263 96 VEVLVGVGSARIRDLFKRAK-----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 170 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~-----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 170 (539)
+...++..+..+. .....+|||||+|.+.... .+.|+..++ .
T Consensus 89 -------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q----------------------QdaLL~~lE----~ 135 (725)
T PRK13341 89 -------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ----------------------QDALLPWVE----N 135 (725)
T ss_pred -------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH----------------------HHHHHHHhc----C
Confidence 1122333333321 1245699999999975331 223444443 2
Q ss_pred CcEEEEEecC--CCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc-------CCCCC-CCCHHHHHhhCCCCCH
Q 009263 171 KGVIFLAATN--RRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-------VKMSD-SVDLSSYAKNLPGWTG 240 (539)
Q Consensus 171 ~~vivIaatn--~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~-------~~~~~-~~~~~~la~~t~g~s~ 240 (539)
..+++|++|+ ....+++++++ | +..+.|++++.+++..+++..+.. ..+.- +..+..++....| +.
T Consensus 136 g~IiLI~aTTenp~~~l~~aL~S--R-~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~ 211 (725)
T PRK13341 136 GTITLIGATTENPYFEVNKALVS--R-SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DA 211 (725)
T ss_pred ceEEEEEecCCChHhhhhhHhhc--c-ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CH
Confidence 4566776553 23468899998 6 357899999999999999988862 11111 1126777887766 67
Q ss_pred HHHHHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHh
Q 009263 241 ARLAQLVQEAALVAVRKGH--ESILSSDMDDAVDRLT 275 (539)
Q Consensus 241 ~dl~~lv~~A~~~A~~~~~--~~I~~~d~~~a~~~~~ 275 (539)
+.+.++++.+...+..... ..|+.+++.+++.+..
T Consensus 212 R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 212 RSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 8888888877643322222 2378888888876643
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.62 E-value=1.1e-14 Score=151.10 Aligned_cols=209 Identities=22% Similarity=0.335 Sum_probs=148.9
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC--------
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------- 86 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------- 86 (539)
.|.++++|.+|++++|++.+++.|.+.+.. ...+..+||+||||+|||++|+++++.+..+
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 366788999999999999999998876642 1345678999999999999999999987432
Q ss_pred ----------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhh
Q 009263 87 ----------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLY 146 (539)
Q Consensus 87 ----------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~ 146 (539)
++.+++.. ..+...++.++..+... ...||+|||+|.+..
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-------------- 131 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-------------- 131 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------
Confidence 23333221 11223456666655432 235999999998742
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-
Q 009263 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS- 225 (539)
Q Consensus 147 ~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~- 225 (539)
...+.|+..++. ++..+++|++|+.++.+.+++.+ |+ ..+.+++|+.++..+++..++...+..-+
T Consensus 132 --------~~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~ 198 (355)
T TIGR02397 132 --------SAFNALLKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIED 198 (355)
T ss_pred --------HHHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 235667777764 34567777788888888888888 76 57899999999999999998876654322
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 226 VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 226 ~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
..+..++..+.| +++.+.+.++.+..++ ...|+.+++.+++.
T Consensus 199 ~a~~~l~~~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 199 EALELIARAADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 225666777755 7777777777766543 24599999987764
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=6.7e-15 Score=164.92 Aligned_cols=207 Identities=19% Similarity=0.222 Sum_probs=144.4
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
|..++++.+|++|+|++.+++.|+..+..- +.+..+||+||+|||||++|+.||+.+++.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 347899999999999999999988876531 344568999999999999999999998642
Q ss_pred -----------------EEEEeCchhhHHHhhhhhHHHHHHHHHH----HhCCCeEEEEeCcchhhhhhcCCcCCchhhh
Q 009263 87 -----------------FYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHL 145 (539)
Q Consensus 87 -----------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~ 145 (539)
|+.++.... .+...++++.+.+ ......|+||||+|.|..
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~------------- 134 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP------------- 134 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------
Confidence 122221110 1223344443332 224456999999999853
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC
Q 009263 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS 225 (539)
Q Consensus 146 ~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~ 225 (539)
...|.||+.|+. ....+++|++|+.++.|.+.|++ | +.++.|..++.++..++|+..+.+.++..+
T Consensus 135 ---------~a~NaLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--R-c~~v~F~~l~~~~l~~~L~~il~~EGv~id 200 (824)
T PRK07764 135 ---------QGFNALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--R-THHYPFRLVPPEVMRGYLERICAQEGVPVE 200 (824)
T ss_pred ---------HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--h-eeEEEeeCCCHHHHHHHHHHHHHHcCCCCC
Confidence 346778888874 44567777778888888888888 6 468899999999999999888876655432
Q ss_pred C-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHH
Q 009263 226 V-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 270 (539)
Q Consensus 226 ~-~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a 270 (539)
. .+..+++...| +.+++.++++.....+ +...|+.+++...
T Consensus 201 ~eal~lLa~~sgG-dlR~Al~eLEKLia~~---~~~~IT~e~V~al 242 (824)
T PRK07764 201 PGVLPLVIRAGGG-SVRDSLSVLDQLLAGA---GPEGVTYERAVAL 242 (824)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHhhc---CCCCCCHHHHHHH
Confidence 2 25566777766 7888888887755332 2345777665543
No 100
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.61 E-value=6.6e-15 Score=167.34 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=126.6
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEE
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQ 89 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~ 89 (539)
..+-++++|+|+++...++.+++. .. ...+++|+||||||||++|+++|..+ +.+++.
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~---r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQ---RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHh---cC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 345678999999987555544432 22 23478999999999999999999987 678888
Q ss_pred EeCchhh--HHHhhhhhHHHHHHHHHHHh-CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC
Q 009263 90 MAGSEFV--EVLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 166 (539)
Q Consensus 90 ~~~~~~~--~~~~g~~~~~~~~~f~~a~~-~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 166 (539)
++...+. ..+.|..+.+++.+|..+.. ..++||||||+|.+.+...+. +. ....+-|...+
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~-------------~d~~~~lkp~l-- 303 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GA-------------MDAGNMLKPAL-- 303 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cc-------------hhHHHHhcchh--
Confidence 8888776 44778888899999987644 568899999999998654321 00 01112222222
Q ss_pred CCCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCC
Q 009263 167 FDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM 222 (539)
Q Consensus 167 ~~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~ 222 (539)
.+..+.+|++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++........
T Consensus 304 --~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 304 --ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred --hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 456799999999876 48999999 997 5789999999999999887765443
No 101
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=1.7e-14 Score=152.38 Aligned_cols=192 Identities=18% Similarity=0.238 Sum_probs=131.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 135 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~ 135 (539)
.++++||||||+|||+|++++++++ +..+++++...|...+...........|.... ..+++|+|||++.+.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 3579999999999999999999976 68899999888766544332211122344333 3567999999999865321
Q ss_pred CCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC---cCCccccCCCccc--eeeecCCCCHHHHH
Q 009263 136 GIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD---LLDPALLRPGRFD--RKIRIRAPNAKGRT 210 (539)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~---~ld~al~r~gRf~--~~i~v~~P~~~er~ 210 (539)
..++...++|.+.. ....+|+++++.|. .+++.+.+ ||. ..+.+++|+.++|.
T Consensus 220 -------------~qeelf~l~N~l~~-------~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~ 277 (445)
T PRK12422 220 -------------TQEEFFHTFNSLHT-------EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLR 277 (445)
T ss_pred -------------hHHHHHHHHHHHHH-------CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHH
Confidence 22233344444432 22345555544454 46788888 885 79999999999999
Q ss_pred HHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHH---HHHHhCCCCCchhhHHHHHHHHh
Q 009263 211 EILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAAL---VAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 211 ~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~---~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
.|++..+....+.-+.+ ++.++....+ +.+.|.++++.... ++...+ ..|+.+++++++....
T Consensus 278 ~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~-~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 278 SFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSH-QLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 99999887765443333 5567777765 68888888877742 222223 5699999999998764
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=3e-14 Score=150.98 Aligned_cols=191 Identities=19% Similarity=0.294 Sum_probs=132.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhHHHhhhhhH---HHHHHHHHHHhCCCeEEEEeCcchh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSA---RIRDLFKRAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~~~~~~~~~g~~~~---~~~~~f~~a~~~~p~Il~iDEiD~l 130 (539)
.++++|||++|+|||+|++++++++ +..++++++.+|...+...... .+.. |... ...+++|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~-~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNE-ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHH-hccCCEEEEeccccc
Confidence 3569999999999999999999954 4678899999988776543222 1222 2221 235669999999988
Q ss_pred hhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc---CCccccCCCccc--eeeecCCCC
Q 009263 131 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPN 205 (539)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~---ld~al~r~gRf~--~~i~v~~P~ 205 (539)
..+.. ..++...++|.+. .....+|+++...|.. +++.|.+ ||. .++.+.+|+
T Consensus 219 ~~k~~-------------~~e~lf~l~N~~~-------~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd 276 (450)
T PRK14087 219 SYKEK-------------TNEIFFTIFNNFI-------ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLD 276 (450)
T ss_pred cCCHH-------------HHHHHHHHHHHHH-------HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcC
Confidence 64321 2222333333332 2223345544444543 5678888 775 588899999
Q ss_pred HHHHHHHHHHHhccCCCC---CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-CCCCchhhHHHHHHHH
Q 009263 206 AKGRTEILKIHASKVKMS---DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG-HESILSSDMDDAVDRL 274 (539)
Q Consensus 206 ~~er~~il~~~l~~~~~~---~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~-~~~I~~~d~~~a~~~~ 274 (539)
.++|.+|++..+...++. ++.-+..++....| +++.+.++++.+...+.... ...||.+.+.+++...
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 999999999998765431 11226778888877 89999999999987776653 2679999999999765
No 103
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.61 E-value=2.2e-14 Score=136.60 Aligned_cols=167 Identities=23% Similarity=0.372 Sum_probs=121.1
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
....++.+++++|++..|+.|.+-...+... .+.+++||||++|||||+++|++.++. |..++.+...+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQG--------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 4456799999999999999988766543322 467899999999999999999999876 67788887766
Q ss_pred hhHHHhhhhhHHHHHHHHHHH-hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--CCCC
Q 009263 95 FVEVLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DTGK 171 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~-~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--~~~~ 171 (539)
+.. +..++...+ ....-|||+|++- +. +.......|-..|+|- ..+.
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe--------------------~~d~~yk~LKs~LeGgle~~P~ 140 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLS-FE--------------------EGDTEYKALKSVLEGGLEARPD 140 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCC-CC--------------------CCcHHHHHHHHHhcCccccCCC
Confidence 543 234444443 2345699999863 11 1112234555556653 4567
Q ss_pred cEEEEEecCCCCcCCc-----------------------cccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC
Q 009263 172 GVIFLAATNRRDLLDP-----------------------ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD 224 (539)
Q Consensus 172 ~vivIaatn~~~~ld~-----------------------al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~ 224 (539)
+|++.+|+|+...+++ +|.. ||..+|.|.+|+.++-.+|+++++...++..
T Consensus 141 NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 141 NVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred cEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 8999999997654433 2233 9999999999999999999999998766554
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.61 E-value=3.9e-14 Score=138.03 Aligned_cols=207 Identities=14% Similarity=0.157 Sum_probs=131.1
Q ss_pred CCCCcCcCccc-C-cHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 19 GSTGVKFSDVA-G-IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 19 ~~~~~~~~dv~-G-~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
-.+..+|++.+ | ...+...++.+.. . ..+..++||||||||||+|++++++++ +..+.+++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 34667888876 4 3445444544422 1 123479999999999999999999876 3456666665
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCc-
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG- 172 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~- 172 (539)
..... ..+.++... ...+|+|||++.+..+.. ........++.+. ....
T Consensus 83 ~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~~-------------~~~~lf~l~n~~~-------e~g~~ 132 (235)
T PRK08084 83 KRAWF--------VPEVLEGME--QLSLVCIDNIECIAGDEL-------------WEMAIFDLYNRIL-------ESGRT 132 (235)
T ss_pred HHhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCHH-------------HHHHHHHHHHHHH-------HcCCC
Confidence 43221 111222221 135899999999864321 1112222223222 1222
Q ss_pred EEEEEecCCCCc---CCccccCCCccc--eeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHH
Q 009263 173 VIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQL 246 (539)
Q Consensus 173 vivIaatn~~~~---ld~al~r~gRf~--~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~l 246 (539)
.+++++++.|.. +.|.|++ |+. .++.+.+|+.+++.++++..+....+..+.+ ++.++....| +.+.+.++
T Consensus 133 ~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~ 209 (235)
T PRK08084 133 RLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMT 209 (235)
T ss_pred eEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHH
Confidence 355555666665 5788998 775 7999999999999999988666544432222 7778888877 88999999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 247 VQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 247 v~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
++.....+..+ ...||...+.+++
T Consensus 210 l~~l~~~~l~~-~~~it~~~~k~~l 233 (235)
T PRK08084 210 LDQLDRASITA-QRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 98865444443 3558888887765
No 105
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.61 E-value=4.5e-14 Score=153.45 Aligned_cols=216 Identities=19% Similarity=0.267 Sum_probs=141.9
Q ss_pred CcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-------C---CCEEEEeCch
Q 009263 26 SDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------G---VPFYQMAGSE 94 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-------~---~~~~~~~~~~ 94 (539)
+.|.|.++..++|..++.. +... .+...++|+|+||||||.+++.+.+++ + +.+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgs--------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQS--------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcC--------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 7899999999999888774 3321 233445799999999999999998766 2 5578999855
Q ss_pred hhHHHh----------------h-hhhHHHHHHHHHHH--hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHH
Q 009263 95 FVEVLV----------------G-VGSARIRDLFKRAK--VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 155 (539)
Q Consensus 95 ~~~~~~----------------g-~~~~~~~~~f~~a~--~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (539)
+...+. + .....+..+|.... .....||+|||||.|..+. +.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-------------------QD 887 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-------------------QK 887 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH-------------------HH
Confidence 332210 0 01233455555442 2345699999999987532 23
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEecCC---CCcCCccccCCCccce-eeecCCCCHHHHHHHHHHHhccCC-CCCCCCHHH
Q 009263 156 TLNQLLIELDGFDTGKGVIFLAATNR---RDLLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASKVK-MSDSVDLSS 230 (539)
Q Consensus 156 ~l~~ll~~ld~~~~~~~vivIaatn~---~~~ld~al~r~gRf~~-~i~v~~P~~~er~~il~~~l~~~~-~~~~~~~~~ 230 (539)
.+..|+.... .....++||+++|. ++.+++.+.+ ||.. .|.|++++.+++.+||+..+.... .-.+..+..
T Consensus 888 VLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIEL 963 (1164)
T PTZ00112 888 VLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQL 963 (1164)
T ss_pred HHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 4555555432 23457899999986 4567788887 6654 478899999999999999887532 111112555
Q ss_pred HHhhC---CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 231 YAKNL---PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 231 la~~t---~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
+|+.. .| ..+..-.+|+.|+.. ++...|+.+|+.+|...+..
T Consensus 964 IArkVAq~SG-DARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 964 CARKVANVSG-DIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHhhhhcCC-HHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 55533 33 344444556666654 34458999999999987643
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=1.8e-14 Score=149.52 Aligned_cols=185 Identities=22% Similarity=0.358 Sum_probs=126.1
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC-----------------
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------- 86 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----------------- 86 (539)
.|++|+|++.+++.|++.+..-+. .+..++.+.+.++||+||||+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999875332 1233455578899999999999999999999977442
Q ss_pred ------EEEEeCchhhHHHhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHH
Q 009263 87 ------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 156 (539)
Q Consensus 87 ------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (539)
+..+.... ...+...++++++.+... ...|+||||+|.+... .
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~----------------------a 133 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER----------------------A 133 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH----------------------H
Confidence 11111110 112234577777766532 3469999999998532 2
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCC
Q 009263 157 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP 236 (539)
Q Consensus 157 l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~ 236 (539)
.|.||..|+. ++.+.++|.+|+.++.+.|.+++ |+ ..++|++|+.++..+.+.... ... ......++..+.
T Consensus 134 anaLLk~LEe--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~ 204 (394)
T PRK07940 134 ANALLKAVEE--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQ 204 (394)
T ss_pred HHHHHHHhhc--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcC
Confidence 4677887764 34445555566668999999998 75 689999999998877776322 222 223557788888
Q ss_pred CCCHHHHHHH
Q 009263 237 GWTGARLAQL 246 (539)
Q Consensus 237 g~s~~dl~~l 246 (539)
|..+..+.-+
T Consensus 205 G~~~~A~~l~ 214 (394)
T PRK07940 205 GHIGRARRLA 214 (394)
T ss_pred CCHHHHHHHh
Confidence 8655554443
No 107
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.4e-14 Score=155.44 Aligned_cols=208 Identities=22% Similarity=0.283 Sum_probs=146.5
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC--------
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------- 86 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------- 86 (539)
.|..+++|.+|++|+|++.+++.|.+.+.. .+.+.++||+||+|+|||++|+++|+.+.+.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 466789999999999999999888876542 1345679999999999999999999987431
Q ss_pred ----------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhh
Q 009263 87 ----------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLY 146 (539)
Q Consensus 87 ----------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~ 146 (539)
++.+++.. ..+...++.+...+... ...|++|||+|.+..
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-------------- 133 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-------------- 133 (605)
T ss_pred cccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------
Confidence 12222211 11233456666554322 235999999998742
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-C
Q 009263 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-S 225 (539)
Q Consensus 147 ~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~ 225 (539)
...+.|+..|+. ++..+++|++|+.+..+.+++++ |+ ..++|++|+.++....+...+...+..- +
T Consensus 134 --------~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~ 200 (605)
T PRK05896 134 --------SAWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIED 200 (605)
T ss_pred --------HHHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 234677777763 44567777788888999999988 75 4789999999999999988876654322 2
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 226 VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 226 ~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
..+..++..+.| +.+++.++++.+..+. + ..|+.+++.+.+
T Consensus 201 eal~~La~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~ell 241 (605)
T PRK05896 201 NAIDKIADLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINKTF 241 (605)
T ss_pred HHHHHHHHHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 236677777766 7888888877754433 3 238888777653
No 108
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.8e-14 Score=157.43 Aligned_cols=214 Identities=24% Similarity=0.353 Sum_probs=150.9
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE---Ee
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ---MA 91 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~---~~ 91 (539)
.|..+++|.+|++|+|++.+++.|+..+..- +.+..+||+||+|+|||++|+++|+.+.++-.. -.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 4667899999999999999999988877521 345678999999999999999999988653110 01
Q ss_pred CchhhH-------HH--hh---hhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHH
Q 009263 92 GSEFVE-------VL--VG---VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 155 (539)
Q Consensus 92 ~~~~~~-------~~--~g---~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (539)
|..... .+ .+ .+...++.+.+.+.. ....|++|||+|.+.. .
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----------------------~ 133 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----------------------S 133 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----------------------H
Confidence 111100 00 00 123446777666543 2346999999998742 2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHHhh
Q 009263 156 TLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKN 234 (539)
Q Consensus 156 ~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~-~~~~la~~ 234 (539)
.++.||..|+. ++..+++|++|+.++.+.+.+++ |+ .++.|.+|+.++....+...+.+.++..+. .+..++..
T Consensus 134 A~NALLKtLEE--PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~l 208 (725)
T PRK07133 134 AFNALLKTLEE--PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKL 208 (725)
T ss_pred HHHHHHHHhhc--CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46778888874 45677778888888999999988 76 488999999999999998887765544322 25667777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 235 LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 235 t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
+.| +.+++.+++..+..++ ...|+.+++.+++
T Consensus 209 S~G-slR~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 209 SSG-SLRDALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 766 7888888888765442 2348888877654
No 109
>PRK08727 hypothetical protein; Validated
Probab=99.59 E-value=4.5e-14 Score=137.35 Aligned_cols=208 Identities=18% Similarity=0.228 Sum_probs=131.3
Q ss_pred CCCcCcCcccCcH-HHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009263 20 STGVKFSDVAGID-EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 95 (539)
Q Consensus 20 ~~~~~~~dv~G~~-~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~ 95 (539)
.+..+|++.++.+ .....+..+. . + .....++|+||+|||||+|++++++++ +..+.+++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~---~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALA---A--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHH---h--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 4667888876544 3333332221 1 0 123469999999999999999997765 566777776554
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEE
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 175 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viv 175 (539)
... +...+... ....+|+|||+|.+..+.. ....+..++..+ ..+..-+|
T Consensus 81 ~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~~-----------------~~~~lf~l~n~~---~~~~~~vI 130 (233)
T PRK08727 81 AGR--------LRDALEAL--EGRSLVALDGLESIAGQRE-----------------DEVALFDFHNRA---RAAGITLL 130 (233)
T ss_pred hhh--------HHHHHHHH--hcCCEEEEeCcccccCChH-----------------HHHHHHHHHHHH---HHcCCeEE
Confidence 332 22334333 3446999999998764321 112222333333 12222244
Q ss_pred EEecCCCCcC---CccccCCCcc--ceeeecCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHHhhCCCCCHHHHHHHHHH
Q 009263 176 LAATNRRDLL---DPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQE 249 (539)
Q Consensus 176 Iaatn~~~~l---d~al~r~gRf--~~~i~v~~P~~~er~~il~~~l~~~~~~~~~-~~~~la~~t~g~s~~dl~~lv~~ 249 (539)
+.+.+.|..+ ++.|.+ || ..++.+++|+.+++.++++.++....+..+. .+..++..+.| +.+.+.++++.
T Consensus 131 ~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~ 207 (233)
T PRK08727 131 YTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDR 207 (233)
T ss_pred EECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4444566654 688888 86 5688999999999999999877654443222 26788888776 66777777777
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHH
Q 009263 250 AALVAVRKGHESILSSDMDDAVDR 273 (539)
Q Consensus 250 A~~~A~~~~~~~I~~~d~~~a~~~ 273 (539)
....+...+ ..||...+.+.+..
T Consensus 208 l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 208 LDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHhC-CCCCHHHHHHHHhh
Confidence 665555544 46888888877753
No 110
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.3e-14 Score=151.64 Aligned_cols=213 Identities=23% Similarity=0.321 Sum_probs=144.9
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC-------CEE
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFY 88 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~ 88 (539)
|..+++|.+|++++|++.++..|...+..- +.+..+||+||+|+|||++|+.+|+.+++ |+-
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 456789999999999999999888776431 34456899999999999999999998763 111
Q ss_pred EE-eCchhhH-----HH-----hhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHH
Q 009263 89 QM-AGSEFVE-----VL-----VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 153 (539)
Q Consensus 89 ~~-~~~~~~~-----~~-----~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (539)
.+ +|..+.. .+ ...+...++.+...+.. ..+.|++|||+|.+..
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------------- 133 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------------- 133 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------------
Confidence 10 0100000 00 01122334555444432 2346999999998742
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHH
Q 009263 154 ETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYA 232 (539)
Q Consensus 154 ~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la 232 (539)
..++.|+..++. ++..+++|.+|+.++.+.+++.+ |+. .+.|++|+.++....+...+...++..+.+ +..++
T Consensus 134 -~a~naLLk~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 134 -EAFNALLKTLEE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred -HHHHHHHHHHhc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 235667777764 34456666667777888888887 654 789999999999999999888766543222 56677
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 233 KNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 233 ~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
..+.| +.+++.++++.+..++ ...||.+++.+++
T Consensus 208 ~~s~G-~lr~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 208 QASEG-GMRDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 77766 7888888888776442 3468888887765
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.3e-14 Score=152.94 Aligned_cols=207 Identities=22% Similarity=0.278 Sum_probs=148.3
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC----------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---------- 85 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---------- 85 (539)
|..+++|.+|++|+|++.+++.|...+..- +.+..+|||||+|+|||++|+++|+.+..
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 456789999999999999999998876521 34567899999999999999999998732
Q ss_pred --------------CEEEEeCchhhHHHhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 86 --------------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 86 --------------~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
.++.+++.. ..+...++.+...+... ...|++|||+|.+..
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~--------------- 131 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK--------------- 131 (535)
T ss_pred ccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------
Confidence 122222211 01234566665543211 235999999998742
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CC
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SV 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~ 226 (539)
...+.||..++.. +..+.+|.+|+.+..+.+++++ | +..++|.+++.++....++..+...+..- +.
T Consensus 132 -------~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--R-c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~ 199 (535)
T PRK08451 132 -------EAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--R-TQHFRFKQIPQNSIISHLKTILEKEGVSYEPE 199 (535)
T ss_pred -------HHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--h-ceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 3456778888743 4556677777888999999998 7 56899999999999998888887655432 22
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..++..+.| +.+++.+++..+..++ ...||.+++.+.+
T Consensus 200 Al~~Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 200 ALEILARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 36677777766 8899999988877665 2457777776553
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.7e-14 Score=154.27 Aligned_cols=216 Identities=20% Similarity=0.233 Sum_probs=151.8
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe--
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA-- 91 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~-- 91 (539)
..+..+++|.+|+||+|++.+++.|.+.+.. .+.+.++||+||+|+|||++|+++|+.+++.....+
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~ 80 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG 80 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence 3466788999999999999999999887652 145678999999999999999999998864321111
Q ss_pred -----------CchhhHH--------H--hhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhh
Q 009263 92 -----------GSEFVEV--------L--VGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLY 146 (539)
Q Consensus 92 -----------~~~~~~~--------~--~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~ 146 (539)
|..+.+. - ...+...+++++..+... ...|++|||+|.+..
T Consensus 81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------- 146 (598)
T PRK09111 81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------- 146 (598)
T ss_pred CccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------
Confidence 1001000 0 011234567777665432 346999999998742
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-
Q 009263 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS- 225 (539)
Q Consensus 147 ~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~- 225 (539)
..+|.|+..|+. .+..+++|.+|+.++.+.+.+++ |+ ..+.|+.|+.++....++..+.+.+..-+
T Consensus 147 --------~a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~ 213 (598)
T PRK09111 147 --------AAFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVED 213 (598)
T ss_pred --------HHHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 236677777763 44566777777777778888887 64 57999999999999999988876654433
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 226 VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 226 ~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
..+..++..+.| +.+++.+++..+..+. ...|+.+++.+.+.
T Consensus 214 eAl~lIa~~a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~llg 255 (598)
T PRK09111 214 EALALIARAAEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhC
Confidence 235666777766 7889888888765442 34688888887653
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.59 E-value=1.4e-14 Score=165.42 Aligned_cols=206 Identities=19% Similarity=0.259 Sum_probs=146.4
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEE
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFY 88 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~ 88 (539)
...+-+++.++|+++...++.+++. . +..++++|+||||||||++++++|..+ +.+++
T Consensus 166 ~~~~~~~~~~igr~~ei~~~~~~l~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLS---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred HhhCCCCCcCCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 3455678999999997555554432 2 233578999999999999999999986 67788
Q ss_pred EEeCchhh--HHHhhhhhHHHHHHHHHHHhC-CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 009263 89 QMAGSEFV--EVLVGVGSARIRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 165 (539)
Q Consensus 89 ~~~~~~~~--~~~~g~~~~~~~~~f~~a~~~-~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 165 (539)
.++...+. ..|.|..+.+++.+|..+... .++||||||||.|.+...+. + . ....+.|...
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~--~---------~---~d~~~~Lk~~-- 297 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE--G---------A---MDAGNMLKPA-- 297 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc--c---------h---hHHHHHhchh--
Confidence 88877765 457788888999999988653 58999999999997643210 0 0 1112222222
Q ss_pred CCCCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCC-----CHHHHHhhC
Q 009263 166 GFDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-----DLSSYAKNL 235 (539)
Q Consensus 166 ~~~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~-----~~~~la~~t 235 (539)
-.+..+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+.....+ .+...+..+
T Consensus 298 --l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 298 --LARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLS 372 (852)
T ss_pred --hhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhc
Confidence 2356789999998764 47999999 997 57899999999999999887665544333 244445555
Q ss_pred CCC-----CHHHHHHHHHHHHHHHHHh
Q 009263 236 PGW-----TGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 236 ~g~-----s~~dl~~lv~~A~~~A~~~ 257 (539)
.+| -|.....++.+|+..+..+
T Consensus 373 ~~yi~~r~lPdkAidlld~a~a~~~~~ 399 (852)
T TIGR03346 373 HRYITDRFLPDKAIDLIDEAAARIRME 399 (852)
T ss_pred cccccccCCchHHHHHHHHHHHHHHhh
Confidence 444 3666778888888766543
No 114
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.7e-14 Score=152.05 Aligned_cols=209 Identities=22% Similarity=0.311 Sum_probs=156.6
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCE-------EEE
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------YQM 90 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-------~~~ 90 (539)
.+++|.+|+|++|++.+...|.+.+..-+... +.||+||.|||||++||.+|+.+++.- ..+
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~h-----------AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIAH-----------AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcchh-----------hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 46899999999999999999999887655544 569999999999999999999886541 111
Q ss_pred ------eCc---hhhHH--HhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHH
Q 009263 91 ------AGS---EFVEV--LVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 155 (539)
Q Consensus 91 ------~~~---~~~~~--~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (539)
+.. ++++. -...+...+|++.+.+.. ..+.|.+|||+|.|. ..
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS----------------------~~ 134 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS----------------------KQ 134 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh----------------------HH
Confidence 111 11110 011234557777777642 234599999999875 34
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhh
Q 009263 156 TLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN 234 (539)
Q Consensus 156 ~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~ 234 (539)
.+|.||..++ +++..|++|.+|..+..+++.+++ | +.++.|..-+.++....+...+.+..+..+.+ +..+++.
T Consensus 135 afNALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--R-cq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~ 209 (515)
T COG2812 135 AFNALLKTLE--EPPSHVKFILATTEPQKIPNTILS--R-CQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA 209 (515)
T ss_pred HHHHHhcccc--cCccCeEEEEecCCcCcCchhhhh--c-cccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 6889999887 577889999999999999999998 6 34677999999999999999998877765444 6777888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHH
Q 009263 235 LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 269 (539)
Q Consensus 235 t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~ 269 (539)
..| |.+|...++..|....- ..|+.+.+..
T Consensus 210 a~G-s~RDalslLDq~i~~~~----~~It~~~v~~ 239 (515)
T COG2812 210 AEG-SLRDALSLLDQAIAFGE----GEITLESVRD 239 (515)
T ss_pred cCC-ChhhHHHHHHHHHHccC----CcccHHHHHH
Confidence 888 89999999999876642 3455554443
No 115
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2e-14 Score=156.88 Aligned_cols=206 Identities=22% Similarity=0.312 Sum_probs=148.8
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
+..+++|.+|+||+|++.+++.|.+.+..- +.+..+||+||+|+|||++|+++|+.+++.
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 456789999999999999999998876531 345678999999999999999999987542
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.+++.. ..+...++++...+... ...|++|||+|.+..
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------------- 133 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST--------------- 133 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------
Confidence 22232221 11233466666555322 235999999998753
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-C
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~ 226 (539)
...|.|+..|+. ++..+++|.+|+.++.+.+.+++ |+ ..+.|..++.++....+...+.+.++.-+ .
T Consensus 134 -------~a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~ 201 (576)
T PRK14965 134 -------NAFNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDA 201 (576)
T ss_pred -------HHHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHH
Confidence 235778888873 45677888888888999999988 64 58889999999988888888776654422 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 270 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a 270 (539)
.+..++..+.| +.+++.+++..+..+.. ..|+.+++...
T Consensus 202 al~~la~~a~G-~lr~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 202 ALALVARKGDG-SMRDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 36777777776 78888888877665542 34787777655
No 116
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.57 E-value=3.4e-14 Score=136.69 Aligned_cols=200 Identities=22% Similarity=0.310 Sum_probs=123.1
Q ss_pred CCcCcCccc-Cc--HHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeC
Q 009263 21 TGVKFSDVA-GI--DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 92 (539)
Q Consensus 21 ~~~~~~dv~-G~--~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~ 92 (539)
+..+|++.+ |- ..+......+. .++. .....++||||+|+|||+|++|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia---~~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIA---ENPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHH---HSTT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHH---hcCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 667899975 53 23333333332 2222 123458999999999999999999875 567999999
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCc
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 172 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 172 (539)
.+|...+...........|.... ....+|+||++|.+..+.. ...+.-.++|.+ .....
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~~~-------------~q~~lf~l~n~~-------~~~~k 131 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGKQR-------------TQEELFHLFNRL-------IESGK 131 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTHHH-------------HHHHHHHHHHHH-------HHTTS
T ss_pred HHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCchH-------------HHHHHHHHHHHH-------HhhCC
Confidence 99987765433322222233222 3556999999999875421 122222233332 23345
Q ss_pred EEEEEecCCCCc---CCccccCCCccce--eeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHH
Q 009263 173 VIFLAATNRRDL---LDPALLRPGRFDR--KIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQL 246 (539)
Q Consensus 173 vivIaatn~~~~---ld~al~r~gRf~~--~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~l 246 (539)
.+|+++...|.. +++.|.+ ||.. ++.+.+|+.+.|.+|++..+...++.-+.+ +..++....+ +.++|..+
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~ 208 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGA 208 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHH
T ss_pred eEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHH
Confidence 566666666665 4567777 6654 889999999999999999988776664433 5666777655 89999999
Q ss_pred HHHHHHHH
Q 009263 247 VQEAALVA 254 (539)
Q Consensus 247 v~~A~~~A 254 (539)
++....++
T Consensus 209 l~~l~~~~ 216 (219)
T PF00308_consen 209 LNRLDAYA 216 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98877665
No 117
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.57 E-value=9.5e-14 Score=142.42 Aligned_cols=225 Identities=20% Similarity=0.215 Sum_probs=161.3
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGS 93 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~~ 93 (539)
-.+..+|++.+.-+.-.....-...+-..+. .+.+.++||||+|+|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 3567888886544433222222222223331 134569999999999999999999977 3458899999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcE
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 173 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 173 (539)
.|...++......-.+-|+.-. +-.+|+||+|+.+.++.. ..++.-.++|.+.. ..+-
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~-------------~qeefFh~FN~l~~-------~~kq 210 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER-------------TQEEFFHTFNALLE-------NGKQ 210 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh-------------HHHHHHHHHHHHHh-------cCCE
Confidence 9988877665555555666655 556999999999987642 34445556666542 3345
Q ss_pred EEEEecCCCCcC---CccccCCCccce--eeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHH
Q 009263 174 IFLAATNRRDLL---DPALLRPGRFDR--KIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLV 247 (539)
Q Consensus 174 ivIaatn~~~~l---d~al~r~gRf~~--~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv 247 (539)
+|+.+...|..+ .+.|.+ ||.. ++.+.+|+.+.|..|+.......++.-+-+ +..++..... +.++++.++
T Consensus 211 Ivltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL 287 (408)
T COG0593 211 IVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGAL 287 (408)
T ss_pred EEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHH
Confidence 667666677754 578888 7665 889999999999999999777666554434 5666666655 899999999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 248 QEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 248 ~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
+....+|...++ .||.+.+.+++.....
T Consensus 288 ~~l~~~a~~~~~-~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 288 NRLDAFALFTKR-AITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHHHHhcCc-cCcHHHHHHHHHHhhc
Confidence 999999987765 8999999999988754
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.6e-14 Score=145.84 Aligned_cols=216 Identities=21% Similarity=0.328 Sum_probs=144.7
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
-.|.++++|.+|+||+|++.+++.+.+.+.. . ..+.++|||||||+|||++|+++++.+..+.....+.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~---~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 73 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIEN---N--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNE 73 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999999999998888776642 1 3456899999999999999999999875421111000
Q ss_pred hh------hHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH
Q 009263 94 EF------VEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 163 (539)
Q Consensus 94 ~~------~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 163 (539)
.+ .+.....+...++.++..+.. ..+.||+|||+|.+.. ..++.++..
T Consensus 74 ~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----------------------~~~~~ll~~ 131 (367)
T PRK14970 74 DFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----------------------AAFNAFLKT 131 (367)
T ss_pred CCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------------------HHHHHHHHH
Confidence 00 000011123456666665532 2346999999997642 124566666
Q ss_pred hcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHH
Q 009263 164 LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGAR 242 (539)
Q Consensus 164 ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~d 242 (539)
++. ++...++|.+|+.+..+.+++.+ |+ ..+.+++|+.++...++...+.+.+.. ++..+..++..+.| +.+.
T Consensus 132 le~--~~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~ 205 (367)
T PRK14970 132 LEE--PPAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRD 205 (367)
T ss_pred HhC--CCCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHH
Confidence 654 33445666667777888888887 64 468999999999999998887765543 22236777777655 6777
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 243 LAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 243 l~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
+.+.++....++ +.. |+.+++...+.
T Consensus 206 ~~~~lekl~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 206 ALSIFDRVVTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHHHhc---CCC-CCHHHHHHHhC
Confidence 777777665554 323 88888776654
No 119
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.56 E-value=8.4e-14 Score=142.12 Aligned_cols=208 Identities=20% Similarity=0.249 Sum_probs=137.6
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC-----CCEE
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFY 88 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~ 88 (539)
.+|.++++|.+|+|++|++++++.|...+.. . ...+++|+||||||||++++++++++. .+++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~---------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKE---K---------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhC---C---------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 4688999999999999999999888877642 1 112589999999999999999999873 2345
Q ss_pred EEeCchhhHHHhhhhhHHHHHHHHHHHh------CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHH
Q 009263 89 QMAGSEFVEVLVGVGSARIRDLFKRAKV------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 162 (539)
Q Consensus 89 ~~~~~~~~~~~~g~~~~~~~~~f~~a~~------~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 162 (539)
.+++++... ...++..+..... ..+.+|+|||+|.+.... .+.|+.
T Consensus 73 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~----------------------~~~L~~ 124 (319)
T PRK00440 73 ELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA----------------------QQALRR 124 (319)
T ss_pred Eeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH----------------------HHHHHH
Confidence 554433211 1112222211111 235699999999874321 233444
Q ss_pred HhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHH
Q 009263 163 ELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGA 241 (539)
Q Consensus 163 ~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~ 241 (539)
.++.... ...+|.++|.+..+.+++.+ |+. .+++++|+.++...++..++.+.+.. .+..+..++..+.| +.+
T Consensus 125 ~le~~~~--~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r 198 (319)
T PRK00440 125 TMEMYSQ--NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMR 198 (319)
T ss_pred HHhcCCC--CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 4443332 34555567777777777877 654 68999999999999999988766543 22236777777765 555
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 242 RLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 242 dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
.+.+.+..+... ...||.+++..++.
T Consensus 199 ~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 199 KAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 655555543332 35799999987764
No 120
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=1.1e-13 Score=144.45 Aligned_cols=181 Identities=25% Similarity=0.318 Sum_probs=113.9
Q ss_pred CcCc-ccCcHHHHHHHHHHHHH----hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH-
Q 009263 24 KFSD-VAGIDEAVEELQELVRY----LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE- 97 (539)
Q Consensus 24 ~~~d-v~G~~~~k~~L~~~v~~----l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~- 97 (539)
.+++ |+|++.+++.|...+.. +........-...+..++||+||||||||++|+++|..++.||+.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3554 89999999998765531 21110000000123467999999999999999999999999999999987653
Q ss_pred HHhhhhhHH-HHHHHHHH----HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC----
Q 009263 98 VLVGVGSAR-IRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD---- 168 (539)
Q Consensus 98 ~~~g~~~~~-~~~~f~~a----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~---- 168 (539)
.|+|..... +..++..+ ....++||||||||.+..+..+.... .+.....+.+.||..|++-.
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~--------~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSIT--------RDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcC--------CCcccHHHHHHHHHHHhcCeEEeC
Confidence 466654333 33443321 23467899999999998763221100 00111235566777776421
Q ss_pred -------CCCcEEEEEecCCCC----------------------------------------------------cCCccc
Q 009263 169 -------TGKGVIFLAATNRRD----------------------------------------------------LLDPAL 189 (539)
Q Consensus 169 -------~~~~vivIaatn~~~----------------------------------------------------~ld~al 189 (539)
+..+.++|.|+|... -+.|.|
T Consensus 220 ~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf 299 (412)
T PRK05342 220 PQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF 299 (412)
T ss_pred CCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH
Confidence 112345555555410 023444
Q ss_pred cCCCccceeeecCCCCHHHHHHHHH
Q 009263 190 LRPGRFDRKIRIRAPNAKGRTEILK 214 (539)
Q Consensus 190 ~r~gRf~~~i~v~~P~~~er~~il~ 214 (539)
+ ||++.++.|.+.+.++..+|+.
T Consensus 300 l--gRld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 300 I--GRLPVVATLEELDEEALVRILT 322 (412)
T ss_pred h--CCCCeeeecCCCCHHHHHHHHH
Confidence 4 4899999999999999999887
No 121
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.56 E-value=3e-14 Score=162.17 Aligned_cols=202 Identities=22% Similarity=0.274 Sum_probs=143.9
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEEEe
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 91 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~~~ 91 (539)
.-+++.|+|.++..+++.+++. .+..++++|+||||||||++|+.+|..+ +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3468899999988777776643 2345588999999999999999999976 46789999
Q ss_pred Cchhh--HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 009263 92 GSEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 169 (539)
Q Consensus 92 ~~~~~--~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 169 (539)
...+. ..|.|..+.+++.+|+.+....++||||||||.+.+..... ++ ....+-|...+ .
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~-------------~~~a~lLkp~l----~ 304 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA-------------IDAANILKPAL----A 304 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc-------------ccHHHHhHHHH----h
Confidence 88776 35778888999999999988888999999999998654321 00 01112222222 2
Q ss_pred CCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc----CCCC-CCCCHHHHHhhCCCC-
Q 009263 170 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK----VKMS-DSVDLSSYAKNLPGW- 238 (539)
Q Consensus 170 ~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~----~~~~-~~~~~~~la~~t~g~- 238 (539)
+..+.+|++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... ..+. .+..+..++..+.+|
T Consensus 305 rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 305 RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 46688999998654 47899999 996 5789999999999998755432 2221 111255555555554
Q ss_pred ----CHHHHHHHHHHHHHHHHH
Q 009263 239 ----TGARLAQLVQEAALVAVR 256 (539)
Q Consensus 239 ----s~~dl~~lv~~A~~~A~~ 256 (539)
-|.....++.+|+.....
T Consensus 382 ~~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 382 ADRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred ccccCchHHHHHHHHHHHHHHh
Confidence 355666777888766544
No 122
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.1e-14 Score=147.11 Aligned_cols=218 Identities=18% Similarity=0.245 Sum_probs=144.9
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ------ 89 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~------ 89 (539)
+...++|.+|++|+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+.+.-..
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 45678999999999999999988876652 1355679999999999999999999988652100
Q ss_pred ----EeCch------hhH-------HHhh---hhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhh
Q 009263 90 ----MAGSE------FVE-------VLVG---VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHL 145 (539)
Q Consensus 90 ----~~~~~------~~~-------~~~g---~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~ 145 (539)
-.|.. +.. .+.+ .+...++.+.+.+.. ....|+||||+|.+...
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------ 142 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------ 142 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH------------
Confidence 00100 000 0011 113445555444421 22359999999987432
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-
Q 009263 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD- 224 (539)
Q Consensus 146 ~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~- 224 (539)
..+.|+..++. ++...++|.+|+.+..+.+++.+ |. ..++|++++.++....+...++..+..-
T Consensus 143 ----------~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~ 207 (397)
T PRK14955 143 ----------AFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVD 207 (397)
T ss_pred ----------HHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 34566666653 33455666666667788888877 64 4789999999998888888776554322
Q ss_pred CCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHH
Q 009263 225 SVDLSSYAKNLPGWTGARLAQLVQEAALVAVR-KGHESILSSDMDDAVD 272 (539)
Q Consensus 225 ~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~-~~~~~I~~~d~~~a~~ 272 (539)
+..+..++..+.| +.+.+.+.++.+..++.. .....|+.+++.+.+.
T Consensus 208 ~~al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 208 ADALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLN 255 (397)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHC
Confidence 2226677777766 788888888877766532 2345788888887763
No 123
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.1e-13 Score=139.01 Aligned_cols=217 Identities=19% Similarity=0.306 Sum_probs=152.6
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC-----EEEEeCchhhHHHh
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-----FYQMAGSEFVEVLV 100 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-----~~~~~~~~~~~~~~ 100 (539)
+.+.+.++..+.+..++...... ..|.++++|||||||||.+++.+++++.-+ ++++||....+.+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 44999999999998876643322 245569999999999999999999988544 89999977654421
Q ss_pred ---------------hhhhHH-HHHHHHHHH-hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH
Q 009263 101 ---------------GVGSAR-IRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 163 (539)
Q Consensus 101 ---------------g~~~~~-~~~~f~~a~-~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 163 (539)
|..... ...+++... ....-||++||+|.|..+.+ ..+..|+..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------------------~~LY~L~r~ 149 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------------------EVLYSLLRA 149 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------------------hHHHHHHhh
Confidence 111111 222222222 23556999999999976531 456666665
Q ss_pred hcCCCCCCcEEEEEecCCCC---cCCccccCCCccc-eeeecCCCCHHHHHHHHHHHhccCCCCCCC--C----HHHHHh
Q 009263 164 LDGFDTGKGVIFLAATNRRD---LLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVKMSDSV--D----LSSYAK 233 (539)
Q Consensus 164 ld~~~~~~~vivIaatn~~~---~ld~al~r~gRf~-~~i~v~~P~~~er~~il~~~l~~~~~~~~~--~----~~~la~ 233 (539)
.+.. ...+.+|+.+|..+ .+|+.+.+ ++. ..|.||+++.+|...|++......-..... + +..++.
T Consensus 150 ~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a 225 (366)
T COG1474 150 PGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA 225 (366)
T ss_pred cccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 5443 56788999999764 68888887 444 368999999999999999887643222111 1 233344
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 009263 234 NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 234 ~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
...| ..+-...+|+.|+..|.+++...++.+++..|.+.+
T Consensus 226 ~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 226 AESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 4545 667777889999999999999999999999995544
No 124
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1.3e-13 Score=146.12 Aligned_cols=209 Identities=22% Similarity=0.302 Sum_probs=143.9
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC--------
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------- 86 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------- 86 (539)
.+.++++|.+|+||+|++.+++.|...+..- +.+..+||+||||+|||++|+++|+.+...
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP 74 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC
Confidence 4567789999999999999999888776521 345678999999999999999999987432
Q ss_pred -----------------EEEEeCchhhHHHhhhhhHHHHHHHHHH----HhCCCeEEEEeCcchhhhhhcCCcCCchhhh
Q 009263 87 -----------------FYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHL 145 (539)
Q Consensus 87 -----------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~ 145 (539)
++.+++... .+...++.+.+.. ......|++|||+|.+..
T Consensus 75 c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------------- 135 (451)
T PRK06305 75 CNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------------- 135 (451)
T ss_pred CcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-------------
Confidence 222322111 1122333332222 124567999999998742
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC
Q 009263 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS 225 (539)
Q Consensus 146 ~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~ 225 (539)
...+.|+..++. ++..+++|++||.+..+.+++++ |+ ..++|+.++.++....+...+.+.+..-+
T Consensus 136 ---------~~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~ 201 (451)
T PRK06305 136 ---------EAFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETS 201 (451)
T ss_pred ---------HHHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 235677777774 34566777777888889899988 65 47899999999999888887766543322
Q ss_pred -CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 226 -VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 226 -~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
..+..++..+.| +.+++.+.+.....+ .+ ..|+.+++.+++.
T Consensus 202 ~~al~~L~~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~~ 244 (451)
T PRK06305 202 REALLPIARAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKALG 244 (451)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHHC
Confidence 236777877766 666776666655433 22 3488888876653
No 125
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=8.9e-14 Score=150.61 Aligned_cols=207 Identities=19% Similarity=0.248 Sum_probs=146.5
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
+..+++|.+|+||+|++.+++.|+..+.. -+.+..+||+||+|+|||++|+++|+.+..+
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 34578999999999999999998887652 1345679999999999999999999988642
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.+++.. ..+...++++.+.+. .....|++|||+|.+..
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~--------------- 133 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN--------------- 133 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------
Confidence 12221110 012234455544332 23456999999998742
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-C
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~ 226 (539)
..+|.|+..++. ++..+++|++|+.+..+.+++++ |+. .+.|.+++.++..+.++..+...++.-+ .
T Consensus 134 -------~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e 201 (563)
T PRK06647 134 -------SAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE 201 (563)
T ss_pred -------HHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 246778888773 45677777788878889999988 754 6889999999999999888766554322 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..++..+.| +.+++.+++..+..++ ...|+.+++..++
T Consensus 202 Al~lLa~~s~G-dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 202 ALKWIAYKSTG-SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 36667777766 7888888888776543 2457877777654
No 126
>PRK05642 DNA replication initiation factor; Validated
Probab=99.55 E-value=3.2e-13 Score=131.46 Aligned_cols=179 Identities=15% Similarity=0.199 Sum_probs=120.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 135 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~ 135 (539)
...++|+||+|||||+|++++++++ +..+++++..++.... ..+++... ...+|+|||++.+.++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCChH
Confidence 4678999999999999999998764 5778888888776531 12222222 235899999998754321
Q ss_pred CCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc---CCccccCCCcc--ceeeecCCCCHHHHH
Q 009263 136 GIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRF--DRKIRIRAPNAKGRT 210 (539)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~---ld~al~r~gRf--~~~i~v~~P~~~er~ 210 (539)
. ...+..++ +.+..+...++++++..|.. ..+.|++ || ..++.+..|+.+++.
T Consensus 115 -------------~----~~~Lf~l~---n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 115 -------------W----EEALFHLF---NRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred -------------H----HHHHHHHH---HHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHH
Confidence 1 11222222 22233345677766665654 3688888 77 467888999999999
Q ss_pred HHHHHHhccCCCCCCC-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 211 EILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 211 ~il~~~l~~~~~~~~~-~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+++..+....+.-+. -++.++....+ +.+.+.++++..-..+...+ ..||..-+++++
T Consensus 173 ~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~~~~L 232 (234)
T PRK05642 173 RALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQAQ-RKLTIPFLKETL 232 (234)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHh
Confidence 9999666554333222 26777777766 89999999888766554433 568887777765
No 127
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.54 E-value=4.4e-14 Score=143.25 Aligned_cols=219 Identities=21% Similarity=0.337 Sum_probs=135.5
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCC-ceEEEECCCCCcHHHHHHHHHHhc-------CCCEEEEe
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPP-HGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMA 91 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~-~giLL~GppGtGKT~la~alA~~~-------~~~~~~~~ 91 (539)
..+..|++|+|++++++.|.-... .+. .++||+|+||||||++|+++++-+ +.++-..+
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~-------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAI-------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHh-------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 357889999999999888764211 122 479999999999999999999987 33221110
Q ss_pred --C-c--------h-------hhHHHhhhhhHHH------HHH-------HHHH--HhCCCeEEEEeCcchhhhhhcCCc
Q 009263 92 --G-S--------E-------FVEVLVGVGSARI------RDL-------FKRA--KVNKPSVIFIDEIDALATRRQGIF 138 (539)
Q Consensus 92 --~-~--------~-------~~~~~~g~~~~~~------~~~-------f~~a--~~~~p~Il~iDEiD~l~~~~~~~~ 138 (539)
+ . . |.....+.+...+ ... |..- ......+||+||++.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~----- 143 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH----- 143 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-----
Confidence 0 0 0 0001001011111 000 1100 0112249999999997543
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-cCCccccCCCccceeeecCCCCH
Q 009263 139 KDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAPNA 206 (539)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-----------~~~~~vivIaatn~~~-~ld~al~r~gRf~~~i~v~~P~~ 206 (539)
+...|+..|+.- ..+..+++++++|..+ .++++++. ||...+.+++|..
T Consensus 144 -----------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~ 204 (334)
T PRK13407 144 -----------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRD 204 (334)
T ss_pred -----------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCc
Confidence 233444444321 1345689999999755 58899999 9999999998877
Q ss_pred -HHHHHHHHHHhccCC----C------CC---------------C--CC------HHHHHhhCCC-CCHHHHHHHHHHHH
Q 009263 207 -KGRTEILKIHASKVK----M------SD---------------S--VD------LSSYAKNLPG-WTGARLAQLVQEAA 251 (539)
Q Consensus 207 -~er~~il~~~l~~~~----~------~~---------------~--~~------~~~la~~t~g-~s~~dl~~lv~~A~ 251 (539)
++|.++++....... . .. . ++ +..++..+.- ...+++. +++.|.
T Consensus 205 ~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~ 283 (334)
T PRK13407 205 VETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAAR 283 (334)
T ss_pred HHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHH
Confidence 889999987542110 0 00 0 00 2333333332 2345555 899999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 252 LVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
.+|..++++.|+.+|+..+..-+..
T Consensus 284 a~A~l~Gr~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 284 ALAAFEGAEAVGRSHLRSVATMALS 308 (334)
T ss_pred HHHHHcCCCeeCHHHHHHHHHHhhh
Confidence 9999999999999999888755543
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.3e-13 Score=148.99 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=142.0
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE----Ee
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ----MA 91 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~----~~ 91 (539)
|..++++.+|++++|++.++..|...+..- +.+.++||+||+|+|||++|+++|+.+.+.... -.
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 347789999999999999999998877632 234578999999999999999999998652100 00
Q ss_pred ---Cc-----------hhh--HHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhh
Q 009263 92 ---GS-----------EFV--EVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 151 (539)
Q Consensus 92 ---~~-----------~~~--~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~ 151 (539)
|. ++. ......+...+++++..+.. ....|+||||+|.|..
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~------------------- 135 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST------------------- 135 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-------------------
Confidence 00 000 00112344567777766642 2346999999998742
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHH
Q 009263 152 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSS 230 (539)
Q Consensus 152 ~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~ 230 (539)
...+.||..++. .+..+++|++|+.++.+.+.+++ |+ ..++|+.++.++....+...+.+.+..-+ ..+..
T Consensus 136 ---~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~ 207 (620)
T PRK14948 136 ---AAFNALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTL 207 (620)
T ss_pred ---HHHHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 245778888873 44567777788888888888887 64 57889999888888877777765443321 23667
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHH
Q 009263 231 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 269 (539)
Q Consensus 231 la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~ 269 (539)
++..+.| +.+++.++++....+ . ..|+.+++.+
T Consensus 208 La~~s~G-~lr~A~~lLeklsL~---~--~~It~e~V~~ 240 (620)
T PRK14948 208 VAQRSQG-GLRDAESLLDQLSLL---P--GPITPEAVWD 240 (620)
T ss_pred HHHHcCC-CHHHHHHHHHHHHhc---c--CCCCHHHHHH
Confidence 7777766 567777776654332 1 2466655543
No 129
>PRK06620 hypothetical protein; Validated
Probab=99.53 E-value=2e-13 Score=130.73 Aligned_cols=195 Identities=16% Similarity=0.242 Sum_probs=123.9
Q ss_pred CCCcCcCcccCcH---HHHHHHHHHHHHhcChhhhhhcCCCC-CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 20 STGVKFSDVAGID---EAVEELQELVRYLKNPELFDKMGIKP-PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 20 ~~~~~~~dv~G~~---~~k~~L~~~v~~l~~~~~~~~~g~~~-~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
.+..+|++.+--+ .+...++++.. .+ +..+ .+.++||||||+|||+|++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 4667889865433 23333433321 11 2223 2679999999999999999999988753322 1111
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEE
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 175 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viv 175 (539)
. ...+ ...++|+|||||.+. ..+...++|.+. .....++
T Consensus 79 ~-----------~~~~-----~~~d~lliDdi~~~~------------------~~~lf~l~N~~~-------e~g~~il 117 (214)
T PRK06620 79 N-----------EEIL-----EKYNAFIIEDIENWQ------------------EPALLHIFNIIN-------EKQKYLL 117 (214)
T ss_pred c-----------hhHH-----hcCCEEEEeccccch------------------HHHHHHHHHHHH-------hcCCEEE
Confidence 0 1111 123589999999541 112223333332 3345677
Q ss_pred EEecCCCCc--CCccccCCCccc--eeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHH
Q 009263 176 LAATNRRDL--LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEA 250 (539)
Q Consensus 176 Iaatn~~~~--ld~al~r~gRf~--~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A 250 (539)
|+++..|.. + ++|++ |+. .++.+.+|+.+++..+++..+....+.-+.+ ++.++....+ +.+.+.++++..
T Consensus 118 its~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 118 LTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred EEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 777766654 5 77887 765 3789999999999999988887554432222 6778888877 788999998886
Q ss_pred HHHHHHhCCCCCchhhHHHHH
Q 009263 251 ALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 251 ~~~A~~~~~~~I~~~d~~~a~ 271 (539)
...+...+ ..||...+.+++
T Consensus 194 ~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 194 NYFALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHHHHcC-CCCCHHHHHHHh
Confidence 55454444 568888887765
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=147.91 Aligned_cols=217 Identities=18% Similarity=0.260 Sum_probs=144.3
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ------ 89 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~------ 89 (539)
+..+++|.+|++|+|++.+++.|++.+.. -+.+.++||+||+|+|||++|+.+|+.+.+.--.
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 45678999999999999999998876542 1355679999999999999999999998662100
Q ss_pred ----EeCch------hhH-------HHhh---hhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhh
Q 009263 90 ----MAGSE------FVE-------VLVG---VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHL 145 (539)
Q Consensus 90 ----~~~~~------~~~-------~~~g---~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~ 145 (539)
-.|.. +.. .+.+ .+...++.+.+.+. .....|++|||+|.+..
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------- 141 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------- 141 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-------------
Confidence 01100 000 0011 11344555554442 12346999999998742
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-C
Q 009263 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-D 224 (539)
Q Consensus 146 ~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~ 224 (539)
...+.|+..|+. ++..+++|.+|+.+..+.+.+.+ | +..++|..++.++....+...+...+.. .
T Consensus 142 ---------~a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--R-c~~vef~~l~~~ei~~~L~~i~~~egi~I~ 207 (620)
T PRK14954 142 ---------AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--R-CQRFNFKRIPLDEIQSQLQMICRAEGIQID 207 (620)
T ss_pred ---------HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--h-ceEEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 235677777764 33445666666667888888887 5 4688999999999888888777654432 2
Q ss_pred CCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH-hCCCCCchhhHHHHH
Q 009263 225 SVDLSSYAKNLPGWTGARLAQLVQEAALVAVR-KGHESILSSDMDDAV 271 (539)
Q Consensus 225 ~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~-~~~~~I~~~d~~~a~ 271 (539)
+..+..++..+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 208 ~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 208 ADALQLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 2236777777766 677777777766655421 224568888777665
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=148.80 Aligned_cols=207 Identities=21% Similarity=0.299 Sum_probs=141.4
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCE--------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------- 87 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-------- 87 (539)
|.+++++.+|++|+|++.+++.|...+..- +.+..+||+||+|+|||++|+++|+.+++..
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 347899999999999999999988776531 2345689999999999999999999875321
Q ss_pred -----------------EEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhh
Q 009263 88 -----------------YQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLY 146 (539)
Q Consensus 88 -----------------~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~ 146 (539)
+.++... ..+...++++...+.. ....||||||+|.|..
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------- 134 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------- 134 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------------
Confidence 1111110 1122334554443321 2346999999998742
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-
Q 009263 147 NAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS- 225 (539)
Q Consensus 147 ~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~- 225 (539)
..++.|+..++. .+..+++|.+++..+.+.+.+.+ |+ ..+.|+.++..+...++...+...++.-+
T Consensus 135 --------~a~naLLk~LEe--pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~ 201 (585)
T PRK14950 135 --------AAFNALLKTLEE--PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEP 201 (585)
T ss_pred --------HHHHHHHHHHhc--CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 235677777764 23456666667777778788877 64 46889999999999988888776554322
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 226 VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 226 ~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
..+..++..+.| +.+++.+.++....+ +...|+.+++...+
T Consensus 202 eal~~La~~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 202 GALEAIARAATG-SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 226677777766 788888887765443 23468888876654
No 132
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=5.1e-13 Score=132.32 Aligned_cols=186 Identities=19% Similarity=0.218 Sum_probs=114.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch------hhHHHhhhhhHHH-H-------------------HHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE------FVEVLVGVGSARI-R-------------------DLFK 112 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~------~~~~~~g~~~~~~-~-------------------~~f~ 112 (539)
...+||+||||||||++|+++|..++.|++.+++.. +...+.+...... . ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 357999999999999999999999999999998754 2222221111111 0 1122
Q ss_pred HHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--------------CCCCcEEEEEe
Q 009263 113 RAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------------DTGKGVIFLAA 178 (539)
Q Consensus 113 ~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--------------~~~~~vivIaa 178 (539)
.|.. ...+|+||||+.+... +.+.|+..|+.- ..+.++.||+|
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~----------------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaT 157 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE----------------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFT 157 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH----------------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEe
Confidence 2322 2359999999986432 223333333321 12346789999
Q ss_pred cCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCC--CHHHHHhhC------CCCCHHHHHH
Q 009263 179 TNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV--DLSSYAKNL------PGWTGARLAQ 245 (539)
Q Consensus 179 tn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~--~~~~la~~t------~g~s~~dl~~ 245 (539)
+|... .+++++.+ || ..++++.|+.++..+|++.+.. ..... .+..++..+ ...+ .+.
T Consensus 158 sN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~ 228 (262)
T TIGR02640 158 SNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRA 228 (262)
T ss_pred eCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHH
Confidence 99753 56888998 87 5789999999999999988752 22111 011121111 1223 444
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 246 LVQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 246 lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
++.-+...+....+..++.+||.+....+..
T Consensus 229 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 229 SLMIAEVATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHHHHHHHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 4444444444455677888998888877653
No 133
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.50 E-value=4.2e-13 Score=136.38 Aligned_cols=225 Identities=19% Similarity=0.241 Sum_probs=144.3
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC-------CCEE
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFY 88 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-------~~~~ 88 (539)
-....+...|++|+|++++|..|... ..+| ...|+||.||+|||||++|+++++.+. .||.
T Consensus 7 ~~~~~~~~pf~~ivGq~~~k~al~~~---~~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~ 74 (350)
T CHL00081 7 KKKERPVFPFTAIVGQEEMKLALILN---VIDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN 74 (350)
T ss_pred hhccCCCCCHHHHhChHHHHHHHHHh---ccCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC
Confidence 33445667999999999998888643 2233 235899999999999999999987652 2332
Q ss_pred EEeC-------chhhH-------------------HHhhhhhHHH------HHHHHHHH---------hCCCeEEEEeCc
Q 009263 89 QMAG-------SEFVE-------------------VLVGVGSARI------RDLFKRAK---------VNKPSVIFIDEI 127 (539)
Q Consensus 89 ~~~~-------~~~~~-------------------~~~g~~~~~~------~~~f~~a~---------~~~p~Il~iDEi 127 (539)
... +.... ...+.+..++ ...|.... .....+||+||+
T Consensus 75 -~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEI 153 (350)
T CHL00081 75 -SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEV 153 (350)
T ss_pred -CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecCh
Confidence 000 00000 0011122221 11222111 122359999999
Q ss_pred chhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC---------C--CCCCcEEEEEecCCCC-cCCccccCCCcc
Q 009263 128 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG---------F--DTGKGVIFLAATNRRD-LLDPALLRPGRF 195 (539)
Q Consensus 128 D~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~---------~--~~~~~vivIaatn~~~-~ld~al~r~gRf 195 (539)
+.+.... ...|+..|+. . ..+.++++|+|.|..+ .+.+++.+ ||
T Consensus 154 nrL~~~~----------------------Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf 209 (350)
T CHL00081 154 NLLDDHL----------------------VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RF 209 (350)
T ss_pred HhCCHHH----------------------HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--Hh
Confidence 9986542 2234443321 1 1245688888888655 58999999 99
Q ss_pred ceeeecCCCC-HHHHHHHHHHHhccC--CC---------C--------------CCC--C------HHHHHhhCCCCCHH
Q 009263 196 DRKIRIRAPN-AKGRTEILKIHASKV--KM---------S--------------DSV--D------LSSYAKNLPGWTGA 241 (539)
Q Consensus 196 ~~~i~v~~P~-~~er~~il~~~l~~~--~~---------~--------------~~~--~------~~~la~~t~g~s~~ 241 (539)
...+.+..|+ .+.+.+|++...... .. . ..+ + +..++..+.--|++
T Consensus 210 ~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~R 289 (350)
T CHL00081 210 GMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLR 289 (350)
T ss_pred CceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCCh
Confidence 9999999997 589999998753211 00 0 001 0 33444444444677
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 242 RLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 242 dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
.-..+++.|..+|..++++.|+.+|+..+..-+...
T Consensus 290 a~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 290 GDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 778888999999999999999999999998877654
No 134
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=1e-12 Score=136.49 Aligned_cols=220 Identities=22% Similarity=0.250 Sum_probs=130.1
Q ss_pred cccCcHHHHHHHHHHHHH----hcCh-hhhhhcCC-CCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH-HH
Q 009263 27 DVAGIDEAVEELQELVRY----LKNP-ELFDKMGI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VL 99 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~----l~~~-~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~-~~ 99 (539)
-|+|++++++.+...+.. +... ......+. ....++||+||||||||++|+++|..++.||..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 369999999998776631 2110 00000011 12457999999999999999999999999999998877643 46
Q ss_pred hhhhh-HHHHHHHHHH----HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC------
Q 009263 100 VGVGS-ARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD------ 168 (539)
Q Consensus 100 ~g~~~-~~~~~~f~~a----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~------ 168 (539)
+|... ..+...+..+ ....++||||||||.+..+..+.... .+-....+.+.||+.|++..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~--------~dvsg~~vq~~LL~iLeG~~~~v~~~ 229 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSIT--------RDVSGEGVQQALLKIIEGTVANVPPQ 229 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccccc--------ccccchhHHHHHHHHhhccceecccC
Confidence 66532 2333333322 23467899999999998754321100 00001234556666665432
Q ss_pred -----CCCcEEEEEecCCCC--------------------------------------------------cCCccccCCC
Q 009263 169 -----TGKGVIFLAATNRRD--------------------------------------------------LLDPALLRPG 193 (539)
Q Consensus 169 -----~~~~vivIaatn~~~--------------------------------------------------~ld~al~r~g 193 (539)
+..+.++|.|+|-.. .+.|+|+-
T Consensus 230 ~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg-- 307 (413)
T TIGR00382 230 GGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG-- 307 (413)
T ss_pred CCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--
Confidence 123467777777510 02344554
Q ss_pred ccceeeecCCCCHHHHHHHHHHH----hccC-------CCCCCCC---HHHHHhh--CCCCCHHHHHHHHHHHHHHHHH
Q 009263 194 RFDRKIRIRAPNAKGRTEILKIH----ASKV-------KMSDSVD---LSSYAKN--LPGWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 194 Rf~~~i~v~~P~~~er~~il~~~----l~~~-------~~~~~~~---~~~la~~--t~g~s~~dl~~lv~~A~~~A~~ 256 (539)
|++.++.|.+.+.++..+|+... ++++ ++.-.++ ++.+++. ...+-.+.|+.+++.....+..
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 88989999999999998888653 2211 1111111 4445543 3344466666666666554443
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=1.1e-12 Score=146.20 Aligned_cols=166 Identities=23% Similarity=0.346 Sum_probs=115.6
Q ss_pred cccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH-----HHhh
Q 009263 27 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-----VLVG 101 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~-----~~~g 101 (539)
.|+|++++++.|.+.+...+..-.- ..+|...+||+||||||||++|+++|..++.+++.++++++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~---~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGH---EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccC---CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 4899999999999888754321100 0133446999999999999999999999999999999988754 2223
Q ss_pred hhhHH----HHHHH-HHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--C------
Q 009263 102 VGSAR----IRDLF-KRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--D------ 168 (539)
Q Consensus 102 ~~~~~----~~~~f-~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--~------ 168 (539)
..... ....+ ...+....+||||||||.+.+ .+.+.|++.|+.- .
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~----------------------~v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP----------------------DVFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH----------------------HHHHHHHHHHhcCeeecCCCce
Confidence 21100 11123 333445568999999999743 2455666666521 1
Q ss_pred -CCCcEEEEEecCCC-------------------------CcCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc
Q 009263 169 -TGKGVIFLAATNRR-------------------------DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 169 -~~~~vivIaatn~~-------------------------~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~ 219 (539)
.-.++++|+|||.- ..+.|.|+. |++.+|.|++.+.++..+|+..++..
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 11467899999832 125577777 99999999999999999999877653
No 136
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.47 E-value=3.6e-12 Score=119.24 Aligned_cols=171 Identities=22% Similarity=0.342 Sum_probs=123.2
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 92 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~ 92 (539)
.....+++.+++|+|.+.+++.|.+-...+... .|.+++||||..|||||+|+||+-++. +..++.++-
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 345567799999999999999987665543322 466789999999999999999998876 667888888
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhC-CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--CC
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DT 169 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~~~-~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--~~ 169 (539)
.++.+. -.++...+.. ..-|||+|++-- ++.......|-..|+|- ..
T Consensus 122 ~dl~~L---------p~l~~~Lr~~~~kFIlFcDDLSF---------------------e~gd~~yK~LKs~LeG~ve~r 171 (287)
T COG2607 122 EDLATL---------PDLVELLRARPEKFILFCDDLSF---------------------EEGDDAYKALKSALEGGVEGR 171 (287)
T ss_pred HHHhhH---------HHHHHHHhcCCceEEEEecCCCC---------------------CCCchHHHHHHHHhcCCcccC
Confidence 776542 3344444332 345999999721 11122344555556653 34
Q ss_pred CCcEEEEEecCCCCcCCcc--------------------ccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC
Q 009263 170 GKGVIFLAATNRRDLLDPA--------------------LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD 224 (539)
Q Consensus 170 ~~~vivIaatn~~~~ld~a--------------------l~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~ 224 (539)
+.+|+|.+|+|+...+++. +.=+.||...+.|++++.++...|+.+++++.+++-
T Consensus 172 P~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 172 PANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6789999999987655421 111239999999999999999999999998877654
No 137
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.46 E-value=8.9e-13 Score=134.03 Aligned_cols=218 Identities=21% Similarity=0.267 Sum_probs=137.0
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-------CCCEE--------
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFY-------- 88 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-------~~~~~-------- 88 (539)
-|+.|+|++++|..|.-.+ -+| ...+++|.|+||+|||++++++++.+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999988874321 122 23579999999999999999999876 33222
Q ss_pred -EEeCch----------------hhHHHhhhhhHHH------HHHH-------HH--HHhCCCeEEEEeCcchhhhhhcC
Q 009263 89 -QMAGSE----------------FVEVLVGVGSARI------RDLF-------KR--AKVNKPSVIFIDEIDALATRRQG 136 (539)
Q Consensus 89 -~~~~~~----------------~~~~~~g~~~~~~------~~~f-------~~--a~~~~p~Il~iDEiD~l~~~~~~ 136 (539)
..+|.. |.+...+.+...+ ...+ .. .......+|||||++.+..+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~-- 147 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHL-- 147 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHH--
Confidence 000000 0111111111111 1110 00 011223599999999975432
Q ss_pred CcCCchhhhhhhhhhHHHHHHHHHHHHhcC---------C--CCCCcEEEEEecCCCC-cCCccccCCCccceeeecCCC
Q 009263 137 IFKDTTDHLYNAATQERETTLNQLLIELDG---------F--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAP 204 (539)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~---------~--~~~~~vivIaatn~~~-~ld~al~r~gRf~~~i~v~~P 204 (539)
...|+..|+. . ..+.++++|+++|..+ .+++++++ ||...+.++.|
T Consensus 148 --------------------Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p 205 (337)
T TIGR02030 148 --------------------VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTV 205 (337)
T ss_pred --------------------HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCC
Confidence 2334444421 1 1234688888888655 68999999 99999999999
Q ss_pred CH-HHHHHHHHHHhccC----C----CC-----------------CCC--C------HHHHHhhCCCCCHHHHHHHHHHH
Q 009263 205 NA-KGRTEILKIHASKV----K----MS-----------------DSV--D------LSSYAKNLPGWTGARLAQLVQEA 250 (539)
Q Consensus 205 ~~-~er~~il~~~l~~~----~----~~-----------------~~~--~------~~~la~~t~g~s~~dl~~lv~~A 250 (539)
+. ++|.+|++...... . .. ..+ + +..++..+..-|++.-..+++.|
T Consensus 206 ~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raA 285 (337)
T TIGR02030 206 RDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAA 285 (337)
T ss_pred CCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 76 88889987743210 0 00 111 1 33444445444677788888999
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 251 ALVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 251 ~~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
..+|..++++.|+.+|+..+..-+...
T Consensus 286 rA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 286 KALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998877653
No 138
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.46 E-value=3.5e-12 Score=125.51 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=78.5
Q ss_pred EEEEecC------------CCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCH
Q 009263 174 IFLAATN------------RRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTG 240 (539)
Q Consensus 174 ivIaatn------------~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~ 240 (539)
++|.+|| .|.-++..|++ |+ .+|...+++.++.++|++..+....+..+.+ ++.|+.....-|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 5566777 35567778887 65 5788889999999999999987765553333 6777777767788
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 241 ARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 241 ~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
+-..+|+.-|...|-+++...|..+|+++|.+-..
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFL 433 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHh
Confidence 88889999999999999999999999999976543
No 139
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.45 E-value=4.3e-12 Score=139.61 Aligned_cols=220 Identities=22% Similarity=0.308 Sum_probs=134.0
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEE
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQ 89 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~ 89 (539)
.++.+|++++|++...+.+...+ .. ..+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~i---a~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKV---AS---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHH---hc---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 56889999999999888764433 11 234579999999999999999998755 457899
Q ss_pred EeCchhh-------HHHhhhhhH----HHHHHHHH----------HHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhh
Q 009263 90 MAGSEFV-------EVLVGVGSA----RIRDLFKR----------AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 148 (539)
Q Consensus 90 ~~~~~~~-------~~~~g~~~~----~~~~~f~~----------a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~ 148 (539)
+++..+. ..+.+.... ..+..+.. .......+|||||++.|....+
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q------------- 282 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ------------- 282 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-------------
Confidence 9887642 111111100 01111111 0112345999999998764422
Q ss_pred hhhHHHHHHHHHHHH-----------------------hcCCCCCCcEEEEEe-cCCCCcCCccccCCCccceeeecCCC
Q 009263 149 ATQERETTLNQLLIE-----------------------LDGFDTGKGVIFLAA-TNRRDLLDPALLRPGRFDRKIRIRAP 204 (539)
Q Consensus 149 ~~~~~~~~l~~ll~~-----------------------ld~~~~~~~vivIaa-tn~~~~ld~al~r~gRf~~~i~v~~P 204 (539)
..+..++.. +..-..+..+++|++ |+.++.++++|++ ||. .+.++++
T Consensus 283 ------~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pl 353 (615)
T TIGR02903 283 ------NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPL 353 (615)
T ss_pred ------HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCC
Confidence 111222211 000012234566654 5668889999988 876 5689999
Q ss_pred CHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHh--------CCCCCchhhHHHHHHHHh
Q 009263 205 NAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRK--------GHESILSSDMDDAVDRLT 275 (539)
Q Consensus 205 ~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~~A~~~--------~~~~I~~~d~~~a~~~~~ 275 (539)
+.++...|++..+......-+.+ +..++..+. .++...+++..+...+..+ ....|+.+|+.+++..-.
T Consensus 354 s~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 354 TPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 99999999999887654322212 344444432 4555555555555444222 223688999999987643
No 140
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=3.6e-13 Score=137.85 Aligned_cols=176 Identities=30% Similarity=0.456 Sum_probs=120.8
Q ss_pred CcccCcHHHHHHHHHHHHH-hcChhhhhhc-CCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH-HHhh-
Q 009263 26 SDVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG- 101 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~-g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~-~~~g- 101 (539)
+-|+|++++|+.+...+.. ++.......+ .-.+|+++||+||||||||++|+++|..++.||+.+++..+.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 3489999999999776653 2221111111 1235689999999999999999999999999999999887764 4555
Q ss_pred hhhHHHHHHHHHH-------------------------------------------------------------------
Q 009263 102 VGSARIRDLFKRA------------------------------------------------------------------- 114 (539)
Q Consensus 102 ~~~~~~~~~f~~a------------------------------------------------------------------- 114 (539)
..+..++.+|..|
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 2333344443333
Q ss_pred ------------------------------------------------------------------------HhCCCeEE
Q 009263 115 ------------------------------------------------------------------------KVNKPSVI 122 (539)
Q Consensus 115 ------------------------------------------------------------------------~~~~p~Il 122 (539)
+.....||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 01234599
Q ss_pred EEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--------CCCCcEEEEEecC----CCCcCCcccc
Q 009263 123 FIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DTGKGVIFLAATN----RRDLLDPALL 190 (539)
Q Consensus 123 ~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--------~~~~~vivIaatn----~~~~ld~al~ 190 (539)
||||||.+..+..+...+ .....+...||..++|- ....++++|++.- .|++|-|.|.
T Consensus 252 fiDEiDKIa~~~~~~~~D----------vS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~ 321 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGAD----------VSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ 321 (441)
T ss_pred EEEchhhhcccCCCCCCC----------CCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh
Confidence 999999999765321111 12234566777777763 2235688887764 4556667777
Q ss_pred CCCccceeeecCCCCHHHHHHHH
Q 009263 191 RPGRFDRKIRIRAPNAKGRTEIL 213 (539)
Q Consensus 191 r~gRf~~~i~v~~P~~~er~~il 213 (539)
- ||..++.+..++.++..+||
T Consensus 322 G--R~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 322 G--RFPIRVELQALTTDDFERIL 342 (441)
T ss_pred C--ccceEEECCCCCHHHHHHHh
Confidence 5 99999999999999999888
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.45 E-value=2.3e-12 Score=145.23 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=132.2
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH-----Hh
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-----LV 100 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~-----~~ 100 (539)
+.|+|++++++.+.+.+...+..-. . ..+|...+||+||||||||++|+++|..++.+++.++++++.+. +.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~--~-~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG--N-PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC--C-CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 4588999999988887765322100 0 01233358999999999999999999999999999999987653 22
Q ss_pred hhh-----hHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--------
Q 009263 101 GVG-----SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------- 167 (539)
Q Consensus 101 g~~-----~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-------- 167 (539)
|.. ......+....+....+||+|||||.+.+ ...+.|++.++.-
T Consensus 531 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~----------------------~~~~~Ll~~ld~g~~~d~~g~ 588 (731)
T TIGR02639 531 GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP----------------------DIYNILLQVMDYATLTDNNGR 588 (731)
T ss_pred cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH----------------------HHHHHHHHhhccCeeecCCCc
Confidence 211 11122233444556678999999998643 2455666666532
Q ss_pred -CCCCcEEEEEecCCCC-------------------------cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccC-
Q 009263 168 -DTGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV- 220 (539)
Q Consensus 168 -~~~~~vivIaatn~~~-------------------------~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~- 220 (539)
..-.+.++|+|||... .+.|.|+. |++.+|.|.+.+.++..+|++..+.+.
T Consensus 589 ~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~ 666 (731)
T TIGR02639 589 KADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELS 666 (731)
T ss_pred ccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 1124578888988531 14566776 999999999999999999999887542
Q ss_pred ------CCCCCCC---HHHHHhh--CCCCCHHHHHHHHHHHHHHH
Q 009263 221 ------KMSDSVD---LSSYAKN--LPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 221 ------~~~~~~~---~~~la~~--t~g~s~~dl~~lv~~A~~~A 254 (539)
++.-.++ ++.++.. .+.+-.+.|+.+++.-....
T Consensus 667 ~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 667 KQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKP 711 (731)
T ss_pred HHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHH
Confidence 1111111 3445543 34455666776666655444
No 142
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.7e-12 Score=142.26 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=144.2
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC--------
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------- 86 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------- 86 (539)
.+-.+++|.+|++|+|++.+++.|...+.. -+.+..+|||||+|+|||++|+.+|+.+.+.
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 455678999999999999999998877652 1355678999999999999999999987531
Q ss_pred -----------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhh
Q 009263 87 -----------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHL 145 (539)
Q Consensus 87 -----------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~ 145 (539)
++.+++.+ ..+...++.+...+... ...|++|||+|.+..
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~------------- 135 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ------------- 135 (614)
T ss_pred CCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------
Confidence 22222211 01133456666555322 235999999998742
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC
Q 009263 146 YNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS 225 (539)
Q Consensus 146 ~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~ 225 (539)
...+.|+..|+. .+...++|.+|+.+..+-+.+++ |. ..++|++++.++....+...+.+.++..+
T Consensus 136 ---------~a~naLLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~ 201 (614)
T PRK14971 136 ---------AAFNAFLKTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAE 201 (614)
T ss_pred ---------HHHHHHHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 235677777774 34456666677777888888988 64 57999999999999999888877665433
Q ss_pred C-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 226 V-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 226 ~-~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
. .+..++..+.| +.+++.+.+.....++ +.. |+.+++.+.+
T Consensus 202 ~~al~~La~~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 202 PEALNVIAQKADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 2 26677777755 6777777776655444 222 6666655544
No 143
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.43 E-value=6.3e-13 Score=136.19 Aligned_cols=177 Identities=29% Similarity=0.426 Sum_probs=123.0
Q ss_pred CcccCcHHHHHHHHHHHHH-hcChhhhhhcC-CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH-HHhh-
Q 009263 26 SDVAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG- 101 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~-~~~g- 101 (539)
..|+|++++|..+...+.. ++......... -..|.++||+||||||||++|+++|+.++.||+.++++.|.+ .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 3499999999999877643 22111111111 113688999999999999999999999999999999988875 4766
Q ss_pred hhhHHHHHHHHHHH------------------------------------------------------------------
Q 009263 102 VGSARIRDLFKRAK------------------------------------------------------------------ 115 (539)
Q Consensus 102 ~~~~~~~~~f~~a~------------------------------------------------------------------ 115 (539)
..+..++.+|..|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 33344445544440
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 009263 116 ------------------------------------------------------------------------VNKPSVIF 123 (539)
Q Consensus 116 ------------------------------------------------------------------------~~~p~Il~ 123 (539)
...-.|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01335999
Q ss_pred EeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--------CCCCcEEEEEecC----CCCcCCccccC
Q 009263 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DTGKGVIFLAATN----RRDLLDPALLR 191 (539)
Q Consensus 124 iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--------~~~~~vivIaatn----~~~~ld~al~r 191 (539)
|||||.+..+..+... +.....+...||..++|- ....+|++|++.- .|++|-|.|.-
T Consensus 255 iDEiDKIa~~~~~~~~----------DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G 324 (443)
T PRK05201 255 IDEIDKIAARGGSSGP----------DVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG 324 (443)
T ss_pred EEcchhhcccCCCCCC----------CCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC
Confidence 9999999977532111 112234566777777763 2235688887753 45667777875
Q ss_pred CCccceeeecCCCCHHHHHHHHH
Q 009263 192 PGRFDRKIRIRAPNAKGRTEILK 214 (539)
Q Consensus 192 ~gRf~~~i~v~~P~~~er~~il~ 214 (539)
||..++.+..++.++..+||.
T Consensus 325 --R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 325 --RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred --ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999883
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.42 E-value=6.7e-13 Score=132.77 Aligned_cols=140 Identities=18% Similarity=0.184 Sum_probs=100.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH--HhhhhhHH----------HHHHHHHHHhCCCeEEEEe
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGVGSAR----------IRDLFKRAKVNKPSVIFID 125 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~--~~g~~~~~----------~~~~f~~a~~~~p~Il~iD 125 (539)
..+++||.||||||||++++.+|..++.|++.++++..... +.|...-. ....+..|. ..+++|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 45689999999999999999999999999999988766544 34432110 112344444 346789999
Q ss_pred CcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH-----hc----CCCCCCcEEEEEecCCCC------------c
Q 009263 126 EIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE-----LD----GFDTGKGVIFLAATNRRD------------L 184 (539)
Q Consensus 126 EiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----ld----~~~~~~~vivIaatn~~~------------~ 184 (539)
|+|....+ ....++.+|.. +. .+..++++.||+|+|..+ .
T Consensus 142 Ein~a~p~-------------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 142 EYDAGRPD-------------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred hhhccCHH-------------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 99985433 23445555552 11 123456799999999754 3
Q ss_pred CCccccCCCccceeeecCCCCHHHHHHHHHHHhcc
Q 009263 185 LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 185 ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~ 219 (539)
+++++++ ||..++.++.|+.++-.+|+......
T Consensus 203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 6889999 99989999999999999999876543
No 145
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.41 E-value=7.2e-12 Score=133.15 Aligned_cols=217 Identities=19% Similarity=0.254 Sum_probs=136.9
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHH-----hc--Chhh-----------h----hhcCCCCCceEEEECCCCCc
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRY-----LK--NPEL-----------F----DKMGIKPPHGVLLEGPPGCG 71 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-----l~--~~~~-----------~----~~~g~~~~~giLL~GppGtG 71 (539)
.+|+.++.+..|.|+.|-+.+-.++..++.. +. .... + +..+-++.+-+||+||||.|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 4999999999999999999887666655543 11 0000 0 00111223458899999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHH----HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 72 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 72 KT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
||+||+.+|+.+|..++.+++++=.+.. .-..++..+...- ....|..|+|||||--..
T Consensus 339 KTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~--------------- 401 (877)
T KOG1969|consen 339 KTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR--------------- 401 (877)
T ss_pred hhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCcH---------------
Confidence 9999999999999999999998754421 1122222222211 125688899999986321
Q ss_pred hhhhHHHHHHHHHHHH----hcCCCCC------------CcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHH
Q 009263 148 AATQERETTLNQLLIE----LDGFDTG------------KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTE 211 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~----ld~~~~~------------~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~ 211 (539)
....++..++.. ..|-... -.-.||+.||+. .-|+|+.---|..+|.|++|......+
T Consensus 402 ----~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 402 ----AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred ----HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHH
Confidence 112222223221 0011110 013577888854 446665322488899999999988888
Q ss_pred HHHHHhccCCCCCCC-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 009263 212 ILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 212 il~~~l~~~~~~~~~-~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
-|+..+...++..+. .+..|+..+.+ ||++.+|.....+.+.
T Consensus 476 RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 476 RLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNV 518 (877)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhc
Confidence 888888776655432 25556665544 9999999888777654
No 146
>PRK09087 hypothetical protein; Validated
Probab=99.40 E-value=2.9e-12 Score=123.80 Aligned_cols=172 Identities=14% Similarity=0.147 Sum_probs=116.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcC
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 139 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~ 139 (539)
..++|+||+|+|||+|+++++...+.. +++...+...+. ..... .+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC-------
Confidence 348999999999999999999887654 444333322211 11111 3799999997631
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc---CCccccCCCccc--eeeecCCCCHHHHHHHHH
Q 009263 140 DTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILK 214 (539)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~---ld~al~r~gRf~--~~i~v~~P~~~er~~il~ 214 (539)
...+.-.++|.+. .....+||+++..|.. ..+.|++ |+. .++.+.+|+.++|.++++
T Consensus 102 ---------~~~~lf~l~n~~~-------~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 102 ---------DETGLFHLINSVR-------QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred ---------CHHHHHHHHHHHH-------hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHH
Confidence 1122223333332 3334566666655553 3577888 764 699999999999999999
Q ss_pred HHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 009263 215 IHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 215 ~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
.++....+.-+.+ ++.+++...+ +.+.+..+++.....+...+ ..||...+++++..+
T Consensus 164 ~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 164 KLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 9998765543322 6778888776 77888888877777776655 568999999988764
No 147
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.39 E-value=9.3e-12 Score=110.84 Aligned_cols=124 Identities=43% Similarity=0.615 Sum_probs=82.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhhhHH---HHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSAR---IRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~~~~---~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
.+.+++|+||||||||++++.+++.+ +.+++.+++..+........... ....+.......+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 35689999999999999999999998 88999999887765433322211 1222333445678899999999863
Q ss_pred hhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-CCCCcEEEEEecCCCC--cCCccccCCCccceeeecC
Q 009263 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-DTGKGVIFLAATNRRD--LLDPALLRPGRFDRKIRIR 202 (539)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-~~~~~vivIaatn~~~--~ld~al~r~gRf~~~i~v~ 202 (539)
... ...+..++..+... ....++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 98 ~~~-------------------~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RGA-------------------QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HHH-------------------HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 211 11222222222110 1246788888988776 67777777 888777775
No 148
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.37 E-value=6.3e-12 Score=139.12 Aligned_cols=214 Identities=21% Similarity=0.294 Sum_probs=136.0
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc--------------------
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------------------- 83 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-------------------- 83 (539)
-|.+|+|++.++..|.-.. .++ ...++||.|+||||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4789999999987764322 222 12479999999999999999999887
Q ss_pred ---------------CCCEEEEeCchhhHHHhhhhh--HHH--------HHHHHHHHhCCCeEEEEeCcchhhhhhcCCc
Q 009263 84 ---------------GVPFYQMAGSEFVEVLVGVGS--ARI--------RDLFKRAKVNKPSVIFIDEIDALATRRQGIF 138 (539)
Q Consensus 84 ---------------~~~~~~~~~~~~~~~~~g~~~--~~~--------~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~ 138 (539)
..||+.+.++.......|... ..+ ...+.. ....|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCCHH-----
Confidence 346666554433333333210 000 011111 12349999999997643
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-cCCccccCCCccceeeecCCCC-
Q 009263 139 KDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAPN- 205 (539)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-----------~~~~~vivIaatn~~~-~ld~al~r~gRf~~~i~v~~P~- 205 (539)
+.+.|+..|+.- ..+.++++|+|+|..+ .+.++|+. ||+.+|.++.|.
T Consensus 142 -----------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~ 202 (633)
T TIGR02442 142 -----------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRD 202 (633)
T ss_pred -----------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCc
Confidence 344555555321 1234689999998643 58889999 999999998774
Q ss_pred HHHHHHHHHHHhccCC-------------------------CCCCC--C---HHHHHhhC--CCC-CHHHHHHHHHHHHH
Q 009263 206 AKGRTEILKIHASKVK-------------------------MSDSV--D---LSSYAKNL--PGW-TGARLAQLVQEAAL 252 (539)
Q Consensus 206 ~~er~~il~~~l~~~~-------------------------~~~~~--~---~~~la~~t--~g~-s~~dl~~lv~~A~~ 252 (539)
.+++.++++..+.... ....+ + +..++... .|. +.+....+++-|..
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara 282 (633)
T TIGR02442 203 PEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARA 282 (633)
T ss_pred hHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 5677777765332000 00011 1 22222221 233 46666778899999
Q ss_pred HHHHhCCCCCchhhHHHHHHHHhc
Q 009263 253 VAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 253 ~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
.|..++++.|+.+|+..|+.-+..
T Consensus 283 ~AaL~gr~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 283 LAALDGRRRVTAEDVREAAELVLP 306 (633)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHhh
Confidence 999999999999999999877763
No 149
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=2.7e-11 Score=124.29 Aligned_cols=191 Identities=19% Similarity=0.221 Sum_probs=124.5
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC-------CEEEE--
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFYQM-- 90 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~~~-- 90 (539)
..|..+++|+|++.+++.|...+..- +.|..+||+||+|+|||++|+.+|+.+.. |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 56789999999999999998876532 34567999999999999999999998754 11100
Q ss_pred --eCchhhHH--------H-h-------------hhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCch
Q 009263 91 --AGSEFVEV--------L-V-------------GVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTT 142 (539)
Q Consensus 91 --~~~~~~~~--------~-~-------------g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~ 142 (539)
.|..+... + . ..+...++.+..... .....|++|||+|.+..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 11110000 0 0 001233444333222 23456999999999743
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCC
Q 009263 143 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM 222 (539)
Q Consensus 143 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~ 222 (539)
...|.||..++. ++.+.++|..|+.++.+.+.+++ |+ ..+.+++|+.++..+++........+
T Consensus 156 ------------~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~ 218 (351)
T PRK09112 156 ------------NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS 218 (351)
T ss_pred ------------HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC
Confidence 335678888875 33455555567778888899988 76 69999999999999999874322221
Q ss_pred CCCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 009263 223 SDSVDLSSYAKNLPGWTGARLAQLVQEA 250 (539)
Q Consensus 223 ~~~~~~~~la~~t~g~s~~dl~~lv~~A 250 (539)
+ +..+..++..+.| +++...++++..
T Consensus 219 ~-~~~~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 219 D-GEITEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred C-HHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 1 1125566666666 666666665543
No 150
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.34 E-value=5.1e-11 Score=124.64 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=117.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEEeCch-hhHHHhhhh-hHHH--HHHHHHHHhC---CCeEEEEeCcc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSE-FVEVLVGVG-SARI--RDLFKRAKVN---KPSVIFIDEID 128 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~~~~~-~~~~~~g~~-~~~~--~~~f~~a~~~---~p~Il~iDEiD 128 (539)
...++||+||||||||++|++++..++. +|....+.- ......|.. .... ...|...... ...+||+|||.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 4558999999999999999999997643 555444321 122222311 0111 1223211111 23499999998
Q ss_pred hhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC---------CCCCcEEEEEecCCCC---cCCccccCCCccc
Q 009263 129 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---------DTGKGVIFLAATNRRD---LLDPALLRPGRFD 196 (539)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~---------~~~~~vivIaatn~~~---~ld~al~r~gRf~ 196 (539)
.+.. .+.+.||..|+.- .-+. .++++|||... ...+++.. ||-
T Consensus 118 rasp----------------------~~QsaLLeam~Er~~t~g~~~~~lp~-rfiv~ATN~LPE~g~~leAL~D--RFl 172 (498)
T PRK13531 118 KAGP----------------------AILNTLLTAINERRFRNGAHEEKIPM-RLLVTASNELPEADSSLEALYD--RML 172 (498)
T ss_pred cCCH----------------------HHHHHHHHHHHhCeEecCCeEEeCCC-cEEEEECCCCcccCCchHHhHh--hEE
Confidence 7543 3445666666311 1112 34444557422 23358888 998
Q ss_pred eeeecCCCC-HHHHHHHHHHHhcc--CCC--CCCC-----------------C------HHHHHhh---C---CCCCHHH
Q 009263 197 RKIRIRAPN-AKGRTEILKIHASK--VKM--SDSV-----------------D------LSSYAKN---L---PGWTGAR 242 (539)
Q Consensus 197 ~~i~v~~P~-~~er~~il~~~l~~--~~~--~~~~-----------------~------~~~la~~---t---~g~s~~d 242 (539)
..+.+|+|+ .++..+++...... ... ...+ + +..+... + ...|++.
T Consensus 173 iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~ 252 (498)
T PRK13531 173 IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRR 252 (498)
T ss_pred EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHH
Confidence 899999997 45557777653221 101 0001 0 2233321 2 2378999
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcCC
Q 009263 243 LAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 243 l~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g~ 278 (539)
...+++-|...|...|++.|+.+|+. .+..+.+..
T Consensus 253 ~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 253 WKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 99999999999999999999999999 666676643
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.5e-12 Score=137.45 Aligned_cols=160 Identities=29% Similarity=0.415 Sum_probs=112.5
Q ss_pred CcccCcHHHHHHHHHHHHH----hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC---CCEEEEeCchhhHH
Q 009263 26 SDVAGIDEAVEELQELVRY----LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEV 98 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~----l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---~~~~~~~~~~~~~~ 98 (539)
..|+|++++...+.+.+.. +.+|. +|-..+||.||+|+|||-||+++|..+. ..++.+++++|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 5699999999999888875 44442 3445688999999999999999999996 89999999999876
Q ss_pred ------------HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC
Q 009263 99 ------------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 166 (539)
Q Consensus 99 ------------~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 166 (539)
|+|..+. ..+-+..++...|||++|||+.-. ..++|-||+.||.
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH----------------------pdV~nilLQVlDd 619 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH----------------------PDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC----------------------HHHHHHHHHHhcC
Confidence 3333221 123334455567899999998843 3567888888873
Q ss_pred C--C-------CCCcEEEEEecCCCCc----------------------------CCccccCCCccceeeecCCCCHHHH
Q 009263 167 F--D-------TGKGVIFLAATNRRDL----------------------------LDPALLRPGRFDRKIRIRAPNAKGR 209 (539)
Q Consensus 167 ~--~-------~~~~vivIaatn~~~~----------------------------ld~al~r~gRf~~~i~v~~P~~~er 209 (539)
= . .-.+.++|+|||--.. +.|.++. |+|.+|.|.+.+.+..
T Consensus 620 GrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l 697 (786)
T COG0542 620 GRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVL 697 (786)
T ss_pred CeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHH
Confidence 2 1 1245788999983211 2344554 6666666766666666
Q ss_pred HHHHHHHhc
Q 009263 210 TEILKIHAS 218 (539)
Q Consensus 210 ~~il~~~l~ 218 (539)
.+|+...+.
T Consensus 698 ~~Iv~~~L~ 706 (786)
T COG0542 698 ERIVDLQLN 706 (786)
T ss_pred HHHHHHHHH
Confidence 666665554
No 152
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.34 E-value=6.6e-11 Score=116.41 Aligned_cols=217 Identities=17% Similarity=0.221 Sum_probs=138.2
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCchhh
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEFV 96 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~~~ 96 (539)
+.-+|+..+++.|..+-..+..|.. ....++||+|++|.|||++++.+++.. .+|++++.+..-.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 4458999998888888887888754 234579999999999999999999754 3578877653221
Q ss_pred ------HHHh---h------h-hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHH
Q 009263 97 ------EVLV---G------V-GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 160 (539)
Q Consensus 97 ------~~~~---g------~-~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 160 (539)
.... | . ............+...+.+|+|||++.+..... .. +..+..+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~---------------~~-qr~~Ln~ 171 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY---------------RK-QREFLNA 171 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH---------------HH-HHHHHHH
Confidence 1100 0 0 111223344555678888999999999764321 11 2222223
Q ss_pred HHHhcCCCCCCcEEEEEecCCCC--cCCccccCCCccceeeecCCCCH-HHHHHHHHHHhccCCCCCC--CC----HHHH
Q 009263 161 LIELDGFDTGKGVIFLAATNRRD--LLDPALLRPGRFDRKIRIRAPNA-KGRTEILKIHASKVKMSDS--VD----LSSY 231 (539)
Q Consensus 161 l~~ld~~~~~~~vivIaatn~~~--~ld~al~r~gRf~~~i~v~~P~~-~er~~il~~~l~~~~~~~~--~~----~~~l 231 (539)
|+.+. ..-.-.++.+++..-.. .-|+.+.+ ||. .+.+|.+.. ++...++..+-...++... +. ...+
T Consensus 172 LK~L~-NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i 247 (302)
T PF05621_consen 172 LKFLG-NELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRI 247 (302)
T ss_pred HHHHh-hccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 33331 11123345555433222 34677877 987 455666544 3556677766665555422 22 3455
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHH
Q 009263 232 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 269 (539)
Q Consensus 232 a~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~ 269 (539)
-..+.| +.+++..+++.|+..|++.|.+.||.+.++.
T Consensus 248 ~~~s~G-~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 248 HERSEG-LIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHcCC-chHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 566777 5669999999999999999999999998775
No 153
>PHA02244 ATPase-like protein
Probab=99.33 E-value=4.7e-11 Score=120.82 Aligned_cols=126 Identities=27% Similarity=0.300 Sum_probs=81.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhh---hhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG---VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 135 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~ 135 (539)
+.++||+||||||||++|+++|..++.||+.++...-.....| ....-...-|..|. ....+|+|||++.+....
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v- 196 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA- 196 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH-
Confidence 3479999999999999999999999999999874310001111 00011112233333 345699999999865332
Q ss_pred CCcCCchhhhhhhhhhHHHHHHHHHHHH-----hc-CCCCCCcEEEEEecCCC-----------CcCCccccCCCcccee
Q 009263 136 GIFKDTTDHLYNAATQERETTLNQLLIE-----LD-GFDTGKGVIFLAATNRR-----------DLLDPALLRPGRFDRK 198 (539)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----ld-~~~~~~~vivIaatn~~-----------~~ld~al~r~gRf~~~ 198 (539)
...++.++.. .+ ....+.++.+|+|+|.+ ..+++++++ ||. .
T Consensus 197 ------------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~ 255 (383)
T PHA02244 197 ------------------LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-P 255 (383)
T ss_pred ------------------HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-E
Confidence 2233444321 11 11234678999999973 457899999 995 7
Q ss_pred eecCCCCHH
Q 009263 199 IRIRAPNAK 207 (539)
Q Consensus 199 i~v~~P~~~ 207 (539)
|+++.|+..
T Consensus 256 I~~dyp~~~ 264 (383)
T PHA02244 256 IEFDYDEKI 264 (383)
T ss_pred eeCCCCcHH
Confidence 899999843
No 154
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.8e-11 Score=132.56 Aligned_cols=207 Identities=21% Similarity=0.277 Sum_probs=143.3
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCE
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPF 87 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~ 87 (539)
+....-+++-|+|.++.+.++.+++.. +..++-+|+|+||+|||.++..+|.+. +..+
T Consensus 162 ~~Ar~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i 229 (786)
T COG0542 162 ELAREGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRI 229 (786)
T ss_pred HHHhcCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEE
Confidence 344566799999999998777776542 123356999999999999999999876 4557
Q ss_pred EEEeCchhhH--HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 009263 88 YQMAGSEFVE--VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 165 (539)
Q Consensus 88 ~~~~~~~~~~--~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 165 (539)
+.++...+.. .|.|..+.+++.+++......+.||||||||.+-+......+ .+ ...|-|.-.|
T Consensus 230 ~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~------------DAaNiLKPaL- 295 (786)
T COG0542 230 YSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AM------------DAANLLKPAL- 295 (786)
T ss_pred EEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-cc------------chhhhhHHHH-
Confidence 7888777764 588999999999999999888899999999999876532111 11 1112222122
Q ss_pred CCCCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-----HHHHHhh-
Q 009263 166 GFDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-----LSSYAKN- 234 (539)
Q Consensus 166 ~~~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-----~~~la~~- 234 (539)
.+..+.+|++|+..+ .-|+||-| ||. .|.+..|+.++-..||+-.-..+.....+. +...+..
T Consensus 296 ---ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS 369 (786)
T COG0542 296 ---ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLS 369 (786)
T ss_pred ---hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHH
Confidence 345688898887544 35899999 997 577999999999999987766554443322 1111221
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHH
Q 009263 235 ----LPGWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 235 ----t~g~s~~dl~~lv~~A~~~A~~ 256 (539)
+..+=|.-...++.+|+.....
T Consensus 370 ~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 370 DRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred HhhcccCCCCchHHHHHHHHHHHHHh
Confidence 2233444555666776655543
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.32 E-value=3.5e-11 Score=136.79 Aligned_cols=198 Identities=22% Similarity=0.280 Sum_probs=127.4
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCce-EEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH---
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHG-VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV--- 98 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~g-iLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~--- 98 (539)
+.|+|++++++.+.+.+...+..-.. -..|.+ +||+||||||||.+|+++|..+ ..+++.+++++|.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 56899999999888877653221100 123444 8999999999999999999988 457899999887643
Q ss_pred ---------HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-
Q 009263 99 ---------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD- 168 (539)
Q Consensus 99 ---------~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~- 168 (539)
|+|..... .+....+.+.++||+||||+...+ ...+.|++.++.-.
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~----------------------~v~~~Llq~ld~g~l 697 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHP----------------------DVLELFYQVFDKGVM 697 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcCH----------------------HHHHHHHHHhhccee
Confidence 22322111 123344556779999999987532 23455555555211
Q ss_pred --------CCCcEEEEEecCCCC-----------------------------cCCccccCCCccceeeecCCCCHHHHHH
Q 009263 169 --------TGKGVIFLAATNRRD-----------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTE 211 (539)
Q Consensus 169 --------~~~~vivIaatn~~~-----------------------------~ld~al~r~gRf~~~i~v~~P~~~er~~ 211 (539)
.-.+.+||.|||... .+.|+|+. |++ +|.|.+.+.++..+
T Consensus 698 ~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~ 774 (852)
T TIGR03345 698 EDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAA 774 (852)
T ss_pred ecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHH
Confidence 114578888988411 14566776 887 88999999999999
Q ss_pred HHHHHhccC--------CCCCCCC---HHHHHhhCCC--CCHHHHHHHHHHHHHHH
Q 009263 212 ILKIHASKV--------KMSDSVD---LSSYAKNLPG--WTGARLAQLVQEAALVA 254 (539)
Q Consensus 212 il~~~l~~~--------~~~~~~~---~~~la~~t~g--~s~~dl~~lv~~A~~~A 254 (539)
|+...+... ++.-.++ .+.++....+ +-.+.+.++++.-...+
T Consensus 775 Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 775 IVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred HHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Confidence 998776542 2211122 4455555432 34677777766654443
No 156
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.31 E-value=2.1e-11 Score=113.44 Aligned_cols=209 Identities=19% Similarity=0.261 Sum_probs=127.0
Q ss_pred chhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC-----C
Q 009263 12 YFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----P 86 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~-----~ 86 (539)
+...|+++++|+.++||+|.++..++|.-+...-..| +++|.||||||||+-+.++|+++=. .
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence 3344999999999999999999999998776544444 6899999999999999999998722 3
Q ss_pred EEEEeCchhhHHHhhhhhHHHH---HHHHHHHhCCC----eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHH
Q 009263 87 FYQMAGSEFVEVLVGVGSARIR---DLFKRAKVNKP----SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQ 159 (539)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~~~~---~~f~~a~~~~p----~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (539)
++.++.++-.. ...+| +.|.+-+-.-| .|+++||.|++.... ++.+..
T Consensus 81 vLELNASdeRG------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA-------------------QQAlRR 135 (333)
T KOG0991|consen 81 VLELNASDERG------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA-------------------QQALRR 135 (333)
T ss_pred hhhccCccccc------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH-------------------HHHHHH
Confidence 45666665322 22232 34554443332 499999999975432 222222
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCC
Q 009263 160 LLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGW 238 (539)
Q Consensus 160 ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 238 (539)
.++.. . +...+..+||..+.+-+.+.+ |. -.+.+...+..+...-+....+..++. .+..++.+.-...|
T Consensus 136 tMEiy---S--~ttRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G- 206 (333)
T KOG0991|consen 136 TMEIY---S--NTTRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG- 206 (333)
T ss_pred HHHHH---c--ccchhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc-
Confidence 22221 1 233556688888887777776 53 345555555554433333333322222 12225555555555
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 239 TGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 239 s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
|.++.+|.. .+.-.+-..|+.+.+-..+
T Consensus 207 ---DMRQalNnL--Qst~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 207 ---DMRQALNNL--QSTVNGFGLVNQENVFKVC 234 (333)
T ss_pred ---hHHHHHHHH--HHHhccccccchhhhhhcc
Confidence 666666653 2334455566666555444
No 157
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.31 E-value=1e-11 Score=129.33 Aligned_cols=251 Identities=24% Similarity=0.344 Sum_probs=146.4
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 96 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~ 96 (539)
....+|++|+|.+....++.+.+.... +.+..|||.|.+||||..+|++|-+.. +.||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIA----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhc----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 345789999999999877777665433 344579999999999999999998755 7899999998877
Q ss_pred HHHhhh-------------hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH
Q 009263 97 EVLVGV-------------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 163 (539)
Q Consensus 97 ~~~~g~-------------~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 163 (539)
+..... ....-..+|+.|.. .-||+|||..+... .+.-+...|++
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl~-------------------LQaKLLRVLQE 366 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPLP-------------------LQAKLLRVLQE 366 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCHH-------------------HHHHHHHHHhh
Confidence 653221 11112345554432 38999999876432 22223333333
Q ss_pred hc--CC----CCCCcEEEEEecCCCCcCCccccCCCccce-------eeecCCCCHHHHHH----HHHHHhccC----CC
Q 009263 164 LD--GF----DTGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KM 222 (539)
Q Consensus 164 ld--~~----~~~~~vivIaatn~~~~ld~al~r~gRf~~-------~i~v~~P~~~er~~----il~~~l~~~----~~ 222 (539)
-+ .+ ..+-+|.||+|||.. +..++. .|+|.. ++.+..|...+|.+ +..+++.+. +-
T Consensus 367 kei~rvG~t~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~ 443 (560)
T COG3829 367 KEIERVGGTKPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGR 443 (560)
T ss_pred ceEEecCCCCceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCC
Confidence 11 11 123468999999952 222222 234332 66777788887765 334444432 11
Q ss_pred C-CCCC---HHHHHh-hCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHH-HHHHHHhcCCCcCCcccccccchhhhHH
Q 009263 223 S-DSVD---LSSYAK-NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD-DAVDRLTVGPKRRGIELGNQGQSRRAAT 296 (539)
Q Consensus 223 ~-~~~~---~~~la~-~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~-~a~~~~~~g~~~~~~~~~~~~~~~~a~h 296 (539)
. ..+. +..|.+ ..+| +.++|+|++.++...+ .....|+.+|+. .++......+... ...+......+..
T Consensus 444 ~v~~ls~~a~~~L~~y~WPG-NVRELeNviER~v~~~--~~~~~I~~~~lp~~~l~~k~~~~~~~--~~~~~~~l~~~~e 518 (560)
T COG3829 444 NVKGLSPDALALLLRYDWPG-NVRELENVIERAVNLV--ESDGLIDADDLPAFALEEKEPRPETT--KQIEVGSLKEALE 518 (560)
T ss_pred CcccCCHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc--CCcceeehhhcchhhhcccccCcCcc--cCcccccHHHHHH
Confidence 1 1122 233333 3456 7889999999888744 334458888877 5554331111110 1122222344555
Q ss_pred HHHHHHHHHHhhhc
Q 009263 297 EVGVAMISHLLRRY 310 (539)
Q Consensus 297 EaGhAvv~~~l~~~ 310 (539)
+.-..++...|...
T Consensus 519 ~~Ek~~I~~aL~~~ 532 (560)
T COG3829 519 EYEKHLIREALERH 532 (560)
T ss_pred HHHHHHHHHHHHHh
Confidence 55556666665543
No 158
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.30 E-value=4.9e-11 Score=127.45 Aligned_cols=209 Identities=22% Similarity=0.308 Sum_probs=127.8
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-------------------
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------------------- 83 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------------------- 83 (539)
..|+||.|++.+++.+.-. .....+++|.||||||||+++++++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~a--------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA--------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh--------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 4899999999987665432 2344579999999999999999998743
Q ss_pred ---------CCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHH
Q 009263 84 ---------GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 154 (539)
Q Consensus 84 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (539)
..||....++.......|.+...-...+..| ...+|||||++.+...
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~~~--------------------- 310 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFKRS--------------------- 310 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCCHH---------------------
Confidence 1223222222111112221111111233333 2359999999986533
Q ss_pred HHHHHHHHHhcCC-----------CCCCcEEEEEecCCC-----C------------------cCCccccCCCccceeee
Q 009263 155 TTLNQLLIELDGF-----------DTGKGVIFLAATNRR-----D------------------LLDPALLRPGRFDRKIR 200 (539)
Q Consensus 155 ~~l~~ll~~ld~~-----------~~~~~vivIaatn~~-----~------------------~ld~al~r~gRf~~~i~ 200 (539)
.+..|+..|+.- .-+.++.+|+++|.. . .+...|++ |||.++.
T Consensus 311 -~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~ 387 (499)
T TIGR00368 311 -VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVE 387 (499)
T ss_pred -HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEE
Confidence 233333333321 123578999999853 1 47778888 9999999
Q ss_pred cCCCCHHH-------------HHHHHHH------HhccC---CCCCCCC-------------HHHH---HhhCCCCCHHH
Q 009263 201 IRAPNAKG-------------RTEILKI------HASKV---KMSDSVD-------------LSSY---AKNLPGWTGAR 242 (539)
Q Consensus 201 v~~P~~~e-------------r~~il~~------~l~~~---~~~~~~~-------------~~~l---a~~t~g~s~~d 242 (539)
++.++.++ |.++.+. .+... .+...+. ...+ +....++|.+.
T Consensus 388 ~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~ 467 (499)
T TIGR00368 388 VPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRA 467 (499)
T ss_pred EcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchH
Confidence 99765432 2222221 11111 1111111 1111 11234689999
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 243 LAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 243 l~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
...+++-|...|..++.+.|+.+|+.+|+.
T Consensus 468 ~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 468 THRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999999999974
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.30 E-value=9e-11 Score=133.81 Aligned_cols=168 Identities=24% Similarity=0.320 Sum_probs=111.0
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHH--
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL-- 99 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~-- 99 (539)
.+.|+|++.+++.+.+.+...+..-.. .-+|...+||+||||||||++|+++|+.+ +.+++.++++++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~---~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSD---PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 457899999999998888754311100 01223468999999999999999999987 5679999998876431
Q ss_pred ---hhhhhH----HHHHHHHHH-HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--C-
Q 009263 100 ---VGVGSA----RIRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--D- 168 (539)
Q Consensus 100 ---~g~~~~----~~~~~f~~a-~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--~- 168 (539)
.|.... .-...+..+ +....+||+|||++.+.. ...+.|+..++.- .
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~----------------------~v~~~Ll~ile~g~l~d 701 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP----------------------DVFNILLQVLDDGRLTD 701 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH----------------------HHHHHHHHHHhhCceec
Confidence 111000 001122333 334448999999987542 2344555555421 1
Q ss_pred ------CCCcEEEEEecCCCC-------------------------cCCccccCCCccceeeecCCCCHHHHHHHHHHHh
Q 009263 169 ------TGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 217 (539)
Q Consensus 169 ------~~~~vivIaatn~~~-------------------------~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l 217 (539)
.-.+.+||+|||... .+.|+|+. |++.++.|.+++.+....|++.++
T Consensus 702 ~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 702 GQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred CCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 123467888998621 24567777 999999999999999999998877
Q ss_pred cc
Q 009263 218 SK 219 (539)
Q Consensus 218 ~~ 219 (539)
..
T Consensus 780 ~~ 781 (857)
T PRK10865 780 QR 781 (857)
T ss_pred HH
Confidence 54
No 160
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=2.1e-10 Score=114.15 Aligned_cols=192 Identities=14% Similarity=0.191 Sum_probs=117.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCC-CEEE---EeC----chhhHH---Hhhhh------h---HHHHHHH-HHHHhCC
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQ---MAG----SEFVEV---LVGVG------S---ARIRDLF-KRAKVNK 118 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~-~~~~---~~~----~~~~~~---~~g~~------~---~~~~~~f-~~a~~~~ 118 (539)
..++|+||+|+|||++++.+++.+.. .+.. ++. .++... ..|.. . ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 2221 111 111111 11111 0 1122222 2233456
Q ss_pred CeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecC--CCCcCC----ccccCC
Q 009263 119 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATN--RRDLLD----PALLRP 192 (539)
Q Consensus 119 p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn--~~~~ld----~al~r~ 192 (539)
+.+|+|||+|.+... ....+..+... .. .....+.|+.+.. ..+.+. ..+.+
T Consensus 124 ~~vliiDe~~~l~~~-------------------~~~~l~~l~~~-~~-~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~- 181 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------------LLEELRMLSNF-QT-DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ- 181 (269)
T ss_pred CeEEEEECcccCCHH-------------------HHHHHHHHhCc-cc-CCCCeEEEEEcCCHHHHHHHcCchhHHHHh-
Confidence 779999999986422 11122222211 10 1222333333332 111221 12444
Q ss_pred CccceeeecCCCCHHHHHHHHHHHhccCCCC-----CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhH
Q 009263 193 GRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDM 267 (539)
Q Consensus 193 gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-----~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~ 267 (539)
|+...+.+++.+.++..+++...+...+.. .+..++.+.+.+.|. ++.|..+++.+...|..++...|+.+++
T Consensus 182 -r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v 259 (269)
T TIGR03015 182 -RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEV 259 (269)
T ss_pred -heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 777789999999999999999888654321 122377788889884 7789999999999999999999999999
Q ss_pred HHHHHHHh
Q 009263 268 DDAVDRLT 275 (539)
Q Consensus 268 ~~a~~~~~ 275 (539)
.+++..+.
T Consensus 260 ~~~~~~~~ 267 (269)
T TIGR03015 260 REVIAEID 267 (269)
T ss_pred HHHHHHhh
Confidence 99998753
No 161
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.29 E-value=1.1e-10 Score=119.77 Aligned_cols=131 Identities=31% Similarity=0.431 Sum_probs=89.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHH--------------HHHHHHhCCCeEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRD--------------LFKRAKVNKPSVIF 123 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------~f~~a~~~~p~Il~ 123 (539)
..+++||.||||||||++|+++|..++.+|+.+.|..........+...... +|.... +|++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 3457999999999999999999999999999999886554322111111111 111111 4999
Q ss_pred EeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC----------CCCCCcEEEEEecC-----CCCcCCcc
Q 009263 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG----------FDTGKGVIFLAATN-----RRDLLDPA 188 (539)
Q Consensus 124 iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~----------~~~~~~vivIaatn-----~~~~ld~a 188 (539)
+|||+.... .+.+.|+..|+. +.-+.+++||+|.| ....++++
T Consensus 118 ~DEInra~p----------------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA 175 (329)
T COG0714 118 LDEINRAPP----------------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEA 175 (329)
T ss_pred EeccccCCH----------------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHH
Confidence 999998543 233445555443 33457789999999 44468999
Q ss_pred ccCCCccceeeecCCCCHH-HHHHHHHHH
Q 009263 189 LLRPGRFDRKIRIRAPNAK-GRTEILKIH 216 (539)
Q Consensus 189 l~r~gRf~~~i~v~~P~~~-er~~il~~~ 216 (539)
+++ ||...++++.|+.+ +...++...
T Consensus 176 ~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 176 LLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred HHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 999 99889999999544 444444433
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.29 E-value=9.6e-11 Score=134.07 Aligned_cols=203 Identities=23% Similarity=0.304 Sum_probs=129.9
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHH---
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL--- 99 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~--- 99 (539)
..|+|++.+.+.+.+.+......-.. ..+|...+||+||||||||++|+++|..+ +.+++.++++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~---~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSD---PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCC---CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 56999999999998887753321000 01344569999999999999999999987 5689999998875431
Q ss_pred --hhhhh-----HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--C--
Q 009263 100 --VGVGS-----ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--D-- 168 (539)
Q Consensus 100 --~g~~~-----~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--~-- 168 (539)
.|... .....+....+....+||+||||+.+.+ ...+.|++.++.- .
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~----------------------~v~~~Ll~~l~~g~l~d~ 699 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP----------------------DVFNVLLQVLDDGRLTDG 699 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH----------------------HHHHHHHHHHhcCceecC
Confidence 11100 0111233333445557999999998643 2345555555421 1
Q ss_pred -----CCCcEEEEEecCCCC-------------------------cCCccccCCCccceeeecCCCCHHHHHHHHHHHhc
Q 009263 169 -----TGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 218 (539)
Q Consensus 169 -----~~~~vivIaatn~~~-------------------------~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~ 218 (539)
.-.+.+||+|||... .+.|.|+. |++.++.|.+++.++..+|+...+.
T Consensus 700 ~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 700 QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 124577889999622 13456666 9999999999999999999987764
Q ss_pred cC-------CCCCCCC---HHHHHhh--CCCCCHHHHHHHHHHHHHHHH
Q 009263 219 KV-------KMSDSVD---LSSYAKN--LPGWTGARLAQLVQEAALVAV 255 (539)
Q Consensus 219 ~~-------~~~~~~~---~~~la~~--t~g~s~~dl~~lv~~A~~~A~ 255 (539)
.. ++...++ ++.|+.. .+.+..+.|+++++......+
T Consensus 778 ~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l 826 (852)
T TIGR03346 778 RLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPL 826 (852)
T ss_pred HHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHH
Confidence 31 1111222 4455554 224567777777777665544
No 163
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=7.8e-11 Score=121.55 Aligned_cols=187 Identities=19% Similarity=0.206 Sum_probs=123.2
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCE------------
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF------------ 87 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~------------ 87 (539)
..|.++++|+|++.+++.|.+.+..- +.|..+||+||+|+||+++|.++|+.+-+.-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 57789999999999999998776532 4566799999999999999999999773210
Q ss_pred -EEE--eCchh-----------hHHHh---h--------hhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCc
Q 009263 88 -YQM--AGSEF-----------VEVLV---G--------VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIF 138 (539)
Q Consensus 88 -~~~--~~~~~-----------~~~~~---g--------~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~ 138 (539)
+.+ .|... ..... + -....+|++...+. ...+.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 000 00000 00000 1 11233555544432 24567999999998642
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhc
Q 009263 139 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 218 (539)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~ 218 (539)
...|.||..++. ++.+.++|.+|+.++.+.+.+++ | +..+.|++|+.++..+++.....
T Consensus 156 ----------------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--R-c~~i~l~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 156 ----------------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--R-CRKLRLRPLAPEDVIDALAAAGP 214 (365)
T ss_pred ----------------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--c-ceEEECCCCCHHHHHHHHHHhcc
Confidence 346778888863 44566777788888888888887 6 46889999999999988877542
Q ss_pred cCCCCCCCCHHHHHhhCCCCCHHHHHHHHH
Q 009263 219 KVKMSDSVDLSSYAKNLPGWTGARLAQLVQ 248 (539)
Q Consensus 219 ~~~~~~~~~~~~la~~t~g~s~~dl~~lv~ 248 (539)
.. .+..+..++..+.| ++.....+++
T Consensus 215 ~~---~~~~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 215 DL---PDDPRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred cC---CHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 11 11112456666666 5655555543
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.27 E-value=1.6e-10 Score=131.88 Aligned_cols=167 Identities=26% Similarity=0.318 Sum_probs=113.0
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH----
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV---- 98 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~---- 98 (539)
+.|+|++++++.+...+...+..-. . .-+|...+||+||||||||++|+++|+.+ ..+++.+++++|.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~--~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK--N-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc--C-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 5689999999999887764321100 0 01233458999999999999999999987 468999998887532
Q ss_pred -Hhhhh-----hHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-----
Q 009263 99 -LVGVG-----SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF----- 167 (539)
Q Consensus 99 -~~g~~-----~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~----- 167 (539)
+.|.. ......+....+....+||+|||+|.+.+ ...+.|++.++.-
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~----------------------~v~~~Llq~le~g~~~d~ 643 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP----------------------DIFNLLLQILDDGRLTDS 643 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH----------------------HHHHHHHHHhccCceecC
Confidence 12211 01112344445555568999999998642 3456666666631
Q ss_pred ----CCCCcEEEEEecCCCCc-------------------------------------CCccccCCCccceeeecCCCCH
Q 009263 168 ----DTGKGVIFLAATNRRDL-------------------------------------LDPALLRPGRFDRKIRIRAPNA 206 (539)
Q Consensus 168 ----~~~~~vivIaatn~~~~-------------------------------------ld~al~r~gRf~~~i~v~~P~~ 206 (539)
..-.+.++|+|||.... +.|.|+. |+|.+|.|.+.+.
T Consensus 644 ~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~ 721 (821)
T CHL00095 644 KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTK 721 (821)
T ss_pred CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCH
Confidence 11246888999884321 2245666 8999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009263 207 KGRTEILKIHASK 219 (539)
Q Consensus 207 ~er~~il~~~l~~ 219 (539)
++..+|+...+..
T Consensus 722 ~~l~~Iv~~~l~~ 734 (821)
T CHL00095 722 NDVWEIAEIMLKN 734 (821)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877754
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=8.6e-11 Score=128.16 Aligned_cols=227 Identities=12% Similarity=0.178 Sum_probs=130.5
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE-Ee
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ-MA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~-~~ 91 (539)
...|.+++.|.+++||+|+++..++++.++.....+ ..+.+.++|+||||+|||++++.+|++++..++. .+
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~n 143 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSN 143 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhh
Confidence 346889999999999999999988888776643322 2344569999999999999999999988765422 11
Q ss_pred Cc---hhhHHH------------hhhhhHHHHHHHHHHHh----------CCCeEEEEeCcchhhhhhcCCcCCchhhhh
Q 009263 92 GS---EFVEVL------------VGVGSARIRDLFKRAKV----------NKPSVIFIDEIDALATRRQGIFKDTTDHLY 146 (539)
Q Consensus 92 ~~---~~~~~~------------~g~~~~~~~~~f~~a~~----------~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~ 146 (539)
.. .....+ .......++.++..+.. ....|||||||+.+....
T Consensus 144 pv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~------------ 211 (637)
T TIGR00602 144 PTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD------------ 211 (637)
T ss_pred hhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh------------
Confidence 10 000000 01122334444444431 245699999999865321
Q ss_pred hhhhhHHHHHHHHHHH-HhcCCCCCCcEEEEEecCCCC--------c------CCccccCCCccceeeecCCCCHHHHHH
Q 009263 147 NAATQERETTLNQLLI-ELDGFDTGKGVIFLAATNRRD--------L------LDPALLRPGRFDRKIRIRAPNAKGRTE 211 (539)
Q Consensus 147 ~~~~~~~~~~l~~ll~-~ld~~~~~~~vivIaatn~~~--------~------ld~al~r~gRf~~~i~v~~P~~~er~~ 211 (539)
...+..+|. .... .....+++| +|..+. . +.+++++..|. .+|.|++.+.....+
T Consensus 212 -------~~~lq~lLr~~~~e-~~~~pLI~I-~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K 281 (637)
T TIGR00602 212 -------TRALHEILRWKYVS-IGRCPLVFI-ITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKK 281 (637)
T ss_pred -------HHHHHHHHHHHhhc-CCCceEEEE-ecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHH
Confidence 113334444 2211 122223333 332222 1 23566642233 478999999999888
Q ss_pred HHHHHhccCCC--CCC------CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh-------CCCCCchhhHHHHHH
Q 009263 212 ILKIHASKVKM--SDS------VDLSSYAKNLPGWTGARLAQLVQEAALVAVRK-------GHESILSSDMDDAVD 272 (539)
Q Consensus 212 il~~~l~~~~~--~~~------~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~-------~~~~I~~~d~~~a~~ 272 (539)
.|+..+..... ..+ ..+..++....| |++.+++.-...+.+. +...++..++..+..
T Consensus 282 ~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~ 353 (637)
T TIGR00602 282 FLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKI 353 (637)
T ss_pred HHHHHHHhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccc
Confidence 77777765321 111 135566665555 8887777665554332 223455555554443
No 166
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=1.2e-10 Score=118.73 Aligned_cols=170 Identities=15% Similarity=0.244 Sum_probs=114.6
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC--------EEEEeCch
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------FYQMAGSE 94 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------~~~~~~~~ 94 (539)
++|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+. ++.+...+
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 3699999999999998877642 2455678999999999999999999976321 22222110
Q ss_pred hhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 009263 95 FVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 170 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 170 (539)
. ...+...++++...+. .....|++||++|.+.. ...|.||..++. ++
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~----------------------~a~naLLK~LEe--pp 121 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE----------------------QAQNAFLKTIEE--PP 121 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH----------------------HHHHHHHHHhcC--CC
Confidence 0 1112334666555432 22346999999988642 346788888873 55
Q ss_pred CcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCC
Q 009263 171 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 237 (539)
Q Consensus 171 ~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g 237 (539)
.++++|.+|+.++.+.+.+++ |. ..++|++|+.++....+...+.. .. +..+..++..+.|
T Consensus 122 ~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 122 KGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred CCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 666676677788999999998 64 58999999999888777655432 11 1224456666655
No 167
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.25 E-value=1e-10 Score=126.56 Aligned_cols=190 Identities=16% Similarity=0.193 Sum_probs=118.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEE----eCchhhHHHhhh---hhHHH-HHHHHHHHhCCCeEEEEeCcchh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM----AGSEFVEVLVGV---GSARI-RDLFKRAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~----~~~~~~~~~~g~---~~~~~-~~~f~~a~~~~p~Il~iDEiD~l 130 (539)
..++||+|+||||||++|+++++......+.. ++..+....... +...+ ...+. .....+++|||+|.+
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l 312 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALV---LADNGVCCIDEFDKM 312 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEE---ecCCCEEEEechhhC
Confidence 34799999999999999999999875432221 111111100000 00000 00111 123459999999997
Q ss_pred hhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-------------cCC
Q 009263 131 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-------------LLD 186 (539)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-----------~~~~~vivIaatn~~~-------------~ld 186 (539)
.... ...|+..|+.- .-+.++.||||+|..+ .++
T Consensus 313 ~~~~----------------------q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~ 370 (509)
T smart00350 313 DDSD----------------------RTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP 370 (509)
T ss_pred CHHH----------------------HHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence 5432 22333333321 1235688999999653 589
Q ss_pred ccccCCCccceeee-cCCCCHHHHHHHHHHHhccCC-----------------------------CCCCCC---HHHH--
Q 009263 187 PALLRPGRFDRKIR-IRAPNAKGRTEILKIHASKVK-----------------------------MSDSVD---LSSY-- 231 (539)
Q Consensus 187 ~al~r~gRf~~~i~-v~~P~~~er~~il~~~l~~~~-----------------------------~~~~~~---~~~l-- 231 (539)
+++++ |||..+. ...|+.+...+|.++.+.... +.+.+. .+.+
T Consensus 371 ~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~ 448 (509)
T smart00350 371 APILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVK 448 (509)
T ss_pred hHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 99999 9988654 478999988888887543210 000111 0101
Q ss_pred -H---hh---------CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 232 -A---KN---------LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 232 -a---~~---------t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
. +. ..+.|++.+..+++-|...|..+.++.|+.+|+..|+.-+.
T Consensus 449 ~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 449 AYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 0 10 12568999999999999999999999999999999987553
No 168
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.24 E-value=5.2e-10 Score=107.47 Aligned_cols=130 Identities=25% Similarity=0.305 Sum_probs=91.6
Q ss_pred CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-------------CCc
Q 009263 118 KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-------------RDL 184 (539)
Q Consensus 118 ~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~-------------~~~ 184 (539)
-|.||||||++.|. ...+..|-..++ ++-.-+||++||+ |.-
T Consensus 296 vPGVLFIDEVhMLD----------------------iEcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhG 350 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD----------------------IECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHG 350 (456)
T ss_pred cCcceEeeehhhhh----------------------hHHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCC
Confidence 47899999998863 223444445554 2223356666663 344
Q ss_pred CCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Q 009263 185 LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESIL 263 (539)
Q Consensus 185 ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~ 263 (539)
+++.|++ |+ .+|..-+++.++.++|++...+..++..+.+ +..++.....-|-+-..+++.-|...|-..+++.|.
T Consensus 351 ip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~ 427 (456)
T KOG1942|consen 351 IPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEIS 427 (456)
T ss_pred CCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceee
Confidence 6777777 65 4667777888999999998887666554333 566676666667777888888888999888999999
Q ss_pred hhhHHHHHHHHh
Q 009263 264 SSDMDDAVDRLT 275 (539)
Q Consensus 264 ~~d~~~a~~~~~ 275 (539)
.+|++++-+-..
T Consensus 428 v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 428 VEDVEEVTELFL 439 (456)
T ss_pred cccHHHHHHHHH
Confidence 999998876543
No 169
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.22 E-value=1.6e-11 Score=114.79 Aligned_cols=46 Identities=39% Similarity=0.640 Sum_probs=36.2
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.|+||+|++.+|..|.-... -+.++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999875533 23589999999999999999999854
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.19 E-value=1.4e-10 Score=102.27 Aligned_cols=128 Identities=34% Similarity=0.487 Sum_probs=81.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCC---EEEEeCchhhHHH--------------hhhhhHHHHHHHHHHHhCCCeE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEFVEVL--------------VGVGSARIRDLFKRAKVNKPSV 121 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~---~~~~~~~~~~~~~--------------~g~~~~~~~~~f~~a~~~~p~I 121 (539)
+..++|+||||||||++++.+|..+..+ ++++++....... ........+..+..+....|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 8888877544321 1233455677788888777899
Q ss_pred EEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCcCCccccCCCccceeee
Q 009263 122 IFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPGRFDRKIR 200 (539)
Q Consensus 122 l~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~-~~~ld~al~r~gRf~~~i~ 200 (539)
|+|||++.+....... ....... ...........+..+|+++|. ....+..+.+ |++..+.
T Consensus 82 iiiDei~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 143 (148)
T smart00382 82 LILDEITSLLDAEQEA---------------LLLLLEE-LRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIV 143 (148)
T ss_pred EEEECCcccCCHHHHH---------------HHHhhhh-hHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEE
Confidence 9999999987543210 0000000 000011123456788888886 3334444444 7888777
Q ss_pred cCCC
Q 009263 201 IRAP 204 (539)
Q Consensus 201 v~~P 204 (539)
++.+
T Consensus 144 ~~~~ 147 (148)
T smart00382 144 LLLI 147 (148)
T ss_pred ecCC
Confidence 7654
No 171
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.18 E-value=5.1e-10 Score=122.86 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=67.5
Q ss_pred CcEEEEEecCCC--CcCCccccCCCccc---eeeecCC--C-CHHHHHHHHHHHhc---cCCCCCCCC---HHHHH---h
Q 009263 171 KGVIFLAATNRR--DLLDPALLRPGRFD---RKIRIRA--P-NAKGRTEILKIHAS---KVKMSDSVD---LSSYA---K 233 (539)
Q Consensus 171 ~~vivIaatn~~--~~ld~al~r~gRf~---~~i~v~~--P-~~~er~~il~~~l~---~~~~~~~~~---~~~la---~ 233 (539)
.++.+|+++|.. ..+++.|++ ||+ ..+.++. | +.+.+.++.+...+ ..+..+.++ +..+. .
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 367889999864 478999999 898 5555543 4 44555555444332 221122333 22222 1
Q ss_pred hCC------CCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 234 NLP------GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 234 ~t~------g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
+.. ..+.++|.+++++|...|..+++..|+.+|+.+|++...
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 111 235799999999998888888888999999999987543
No 172
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.18 E-value=3.3e-10 Score=106.63 Aligned_cols=144 Identities=19% Similarity=0.266 Sum_probs=95.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhHHHhhhhhHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 112 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~f~ 112 (539)
+.+..+||+||+|+|||++|+.+++.+... +..+.... ...+...++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 456789999999999999999999987432 22221110 0012345555555
Q ss_pred HHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 009263 113 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 188 (539)
Q Consensus 113 ~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~a 188 (539)
.+.. ....|++|||+|.+... ..+.|+..++. .+...++|.+|+.+..+.++
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~----------------------~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA----------------------AANALLKTLEE--PPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH----------------------HHHHHHHHhcC--CCCCeEEEEEECChHhChHH
Confidence 5543 23469999999987532 34567777765 33455666667777899999
Q ss_pred ccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCC
Q 009263 189 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 237 (539)
Q Consensus 189 l~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g 237 (539)
+.+ |+ ..+.+++|+.++..+++... +++ +..+..++..+.|
T Consensus 143 i~s--r~-~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 143 IRS--RC-QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred HHh--hc-EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 998 65 58999999999998888776 222 2225555555544
No 173
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=4.2e-10 Score=115.87 Aligned_cols=201 Identities=25% Similarity=0.348 Sum_probs=127.0
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 97 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~ 97 (539)
+...+.+|+|.+.+...+.+.+..+...+ ..|||.|.+||||..+|++|-... +.||+++||..+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~Sd----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKSD----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcCC----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 46678899999999998888887655443 379999999999999999997755 78999999998876
Q ss_pred HHhhh-hhHHHHHHHHHHHhC--------CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH--hcC
Q 009263 98 VLVGV-GSARIRDLFKRAKVN--------KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE--LDG 166 (539)
Q Consensus 98 ~~~g~-~~~~~~~~f~~a~~~--------~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--ld~ 166 (539)
..... -....+..|.-|... ...-||+|||..+.-.- +.-+...|++ ++.
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~l-------------------QaKLLRvLQegEieR 348 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLAL-------------------QAKLLRVLQEGEIER 348 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHH-------------------HHHHHHHHhhcceee
Confidence 53221 111223344433322 23489999998875332 2222233332 333
Q ss_pred CCCC----CcEEEEEecCCCCcCCccccCCCccce-------eeecCCCCHHHHHH----HHHHHhccC----CC-CCCC
Q 009263 167 FDTG----KGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KM-SDSV 226 (539)
Q Consensus 167 ~~~~----~~vivIaatn~~~~ld~al~r~gRf~~-------~i~v~~P~~~er~~----il~~~l~~~----~~-~~~~ 226 (539)
+.+. -+|.||++||+ +|...+.. |+|-. ++.+..|...+|.. +.++++.+. +. ...+
T Consensus 349 vG~~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~l 425 (550)
T COG3604 349 VGGDRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSL 425 (550)
T ss_pred cCCCceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCccccc
Confidence 3222 24889999995 33333332 34432 56667788877754 334444432 22 1112
Q ss_pred C---HHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 009263 227 D---LSSYAKN-LPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 227 ~---~~~la~~-t~g~s~~dl~~lv~~A~~~A 254 (539)
+ ++.+... .+| +.++|++++++|...|
T Consensus 426 s~~Al~~L~~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 426 SAEALELLSSYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred CHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHh
Confidence 2 3444443 345 7899999999999887
No 174
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=2.8e-10 Score=115.24 Aligned_cols=183 Identities=16% Similarity=0.209 Sum_probs=121.4
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC-----------------
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------- 86 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----------------- 86 (539)
.|++|+|++.+++.|...+..- +.+..+||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5899999999999999887532 345688999999999999999999976321
Q ss_pred -EEEEeCchhh-H-----HH---hh--------hhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhh
Q 009263 87 -FYQMAGSEFV-E-----VL---VG--------VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDH 144 (539)
Q Consensus 87 -~~~~~~~~~~-~-----~~---~g--------~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~ 144 (539)
++.+...... . .+ .| -....++++...+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1222111000 0 00 00 011245555444432 2446999999998742
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC
Q 009263 145 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD 224 (539)
Q Consensus 145 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~ 224 (539)
...|.||..|+.. + +.++|..|+.++.+-|.+++ | +..+.|++|+.++..+++........ .
T Consensus 139 ----------~aaNaLLK~LEEP--p-~~~fILi~~~~~~Ll~TI~S--R-cq~i~f~~l~~~~~~~~L~~~~~~~~--~ 200 (314)
T PRK07399 139 ----------AAANALLKTLEEP--G-NGTLILIAPSPESLLPTIVS--R-CQIIPFYRLSDEQLEQVLKRLGDEEI--L 200 (314)
T ss_pred ----------HHHHHHHHHHhCC--C-CCeEEEEECChHhCcHHHHh--h-ceEEecCCCCHHHHHHHHHHhhcccc--c
Confidence 3467888888753 3 44566677788999999998 7 46899999999999998887643211 1
Q ss_pred CCCHHHHHhhCCCCCHHHHHHHHH
Q 009263 225 SVDLSSYAKNLPGWTGARLAQLVQ 248 (539)
Q Consensus 225 ~~~~~~la~~t~g~s~~dl~~lv~ 248 (539)
+.+...++....| +++...++++
T Consensus 201 ~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 201 NINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHH
Confidence 1124677777777 6666655554
No 175
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.16 E-value=2.1e-10 Score=119.67 Aligned_cols=209 Identities=23% Similarity=0.299 Sum_probs=129.7
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHH
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL 99 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~ 99 (539)
..+.+++|...+.+++.+.+..+...+ ..|||+|++||||..+|++|-... +.||+.+||..+....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~----------a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSD----------ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCC----------CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 568899999999999999888766543 379999999999999999997755 6699999998876553
Q ss_pred hhh-----hh-------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc--
Q 009263 100 VGV-----GS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-- 165 (539)
Q Consensus 100 ~g~-----~~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld-- 165 (539)
... .. .+-...|+.|. ...||||||..+...- ...||..+.
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~mpl~~----------------------Q~kLLRvLqe~ 262 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEMPLEL----------------------QVKLLRVLQER 262 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccCCHHH----------------------HHHHHHHHHcC
Confidence 221 00 11123444433 3499999998875332 223444333
Q ss_pred ---CCCC----CCcEEEEEecCCCCcCCccccCCCccce-------eeecCCCCHHHHHH----HHHHHhcc----CC-C
Q 009263 166 ---GFDT----GKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASK----VK-M 222 (539)
Q Consensus 166 ---~~~~----~~~vivIaatn~~~~ld~al~r~gRf~~-------~i~v~~P~~~er~~----il~~~l~~----~~-~ 222 (539)
.+.+ +-+|.||++||.. |...+ ..|+|.. ++.+..|...+|.+ ++.+++.+ .+ -
T Consensus 263 ~~~rvG~~~~i~vdvRiIaaT~~d--L~~~v-~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~ 339 (464)
T COG2204 263 EFERVGGNKPIKVDVRIIAATNRD--LEEEV-AAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP 339 (464)
T ss_pred eeEecCCCcccceeeEEEeecCcC--HHHHH-HcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC
Confidence 2212 2368899999952 22211 2234332 77788888888876 44555543 21 1
Q ss_pred CCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHH
Q 009263 223 SDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 269 (539)
Q Consensus 223 ~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~ 269 (539)
...++-+.+......-+|..++.|-|-+...++-.....|+.+++..
T Consensus 340 ~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~~ 386 (464)
T COG2204 340 PKGFSPEALAALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLPL 386 (464)
T ss_pred CCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCccccchhhccc
Confidence 23445555555554445555554444444444444556677766553
No 176
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.16 E-value=1.3e-10 Score=125.01 Aligned_cols=206 Identities=22% Similarity=0.331 Sum_probs=121.1
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHh-----------cCCCEEEEe
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE-----------AGVPFYQMA 91 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~-----------~~~~~~~~~ 91 (539)
.+|++++|.+...+.+.+.+..+.. .+..|||+|++||||+++|++|-+. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4689999999998888877764332 2347999999999999999999876 467999999
Q ss_pred CchhhHHHhhh-----hh--------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHH
Q 009263 92 GSEFVEVLVGV-----GS--------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 158 (539)
Q Consensus 92 ~~~~~~~~~g~-----~~--------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (539)
|..+....... .. ..-..+|+.|. ...||||||+.+.... ..
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~~----------------------Q~ 340 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLPL----------------------QT 340 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHHH----------------------HH
Confidence 98875432211 00 01113444432 3489999999976442 22
Q ss_pred HHHHHhcCC-----C----CCCcEEEEEecCCCCcCCccccCCCccce-------eeecCCCCHHHHHH----HHHHHhc
Q 009263 159 QLLIELDGF-----D----TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHAS 218 (539)
Q Consensus 159 ~ll~~ld~~-----~----~~~~vivIaatn~~~~ld~al~r~gRf~~-------~i~v~~P~~~er~~----il~~~l~ 218 (539)
.|+..++.- . .+.++.+|++||..- . .+...|+|.. .+.+..|...+|.+ ++.+++.
T Consensus 341 kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L--~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~ 417 (538)
T PRK15424 341 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL--E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK 417 (538)
T ss_pred HHHhhhhcCeEEecCCCceeccceEEEEecCCCH--H-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHH
Confidence 333333211 1 123568888887532 1 1112223332 45666777777654 4556655
Q ss_pred cC--CCCCCCCH----------HHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhH
Q 009263 219 KV--KMSDSVDL----------SSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDM 267 (539)
Q Consensus 219 ~~--~~~~~~~~----------~~la~~-t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~ 267 (539)
+. .....+.- ..|... .+| +.++|++++.++...+.......|+.+++
T Consensus 418 ~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 418 QSLAALSAPFSAALRQGLQQCETLLLHYDWPG-NVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 42 11111221 122222 344 67888888888877543222235565554
No 177
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.15 E-value=3.1e-11 Score=107.78 Aligned_cols=113 Identities=35% Similarity=0.443 Sum_probs=68.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH--HhhhhhHH------HHHHHHHHHhCCCeEEEEeCcchhhh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGVGSAR------IRDLFKRAKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~--~~g~~~~~------~~~~f~~a~~~~p~Il~iDEiD~l~~ 132 (539)
+|||+||||||||++|+.+|..++.+++.++++...+. +.|.-... ....+..+. ..+++++||||+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCCH
Confidence 58999999999999999999999999999988764432 11110000 000011111 1567999999997532
Q ss_pred hhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc-------CC-CCCC------cEEEEEecCCCC----cCCccccCCCc
Q 009263 133 RRQGIFKDTTDHLYNAATQERETTLNQLLIELD-------GF-DTGK------GVIFLAATNRRD----LLDPALLRPGR 194 (539)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld-------~~-~~~~------~vivIaatn~~~----~ld~al~r~gR 194 (539)
+....++.++..-. .. .... ++.+|+|+|..+ .+++++++ |
T Consensus 80 -------------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--R 138 (139)
T PF07728_consen 80 -------------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--R 138 (139)
T ss_dssp -------------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T
T ss_pred -------------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--h
Confidence 22223333333210 00 0111 489999999988 79999999 8
Q ss_pred c
Q 009263 195 F 195 (539)
Q Consensus 195 f 195 (539)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 7
No 178
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.15 E-value=4.9e-10 Score=116.45 Aligned_cols=158 Identities=26% Similarity=0.369 Sum_probs=86.6
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC-------EEEEeC----c
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------FYQMAG----S 93 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~~~~----~ 93 (539)
++++.+.+...+.+...+ . ..++++|+||||||||++|+.+|..+... ++.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L---~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---T-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH---h-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 566666666554443322 2 24589999999999999999999987431 222322 2
Q ss_pred hhhHHHh--hhhh----HHHHHHHHHHHhC--CCeEEEEeCcchhhhhhc-CCcCCchhhhhhhhhhHHHHHHHHHHHH-
Q 009263 94 EFVEVLV--GVGS----ARIRDLFKRAKVN--KPSVIFIDEIDALATRRQ-GIFKDTTDHLYNAATQERETTLNQLLIE- 163 (539)
Q Consensus 94 ~~~~~~~--g~~~----~~~~~~f~~a~~~--~p~Il~iDEiD~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~- 163 (539)
+++..+. +.+. ..+.+++..|... .|++||||||++....+- +......+. ......-.+.-...+
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~----~~rg~~~~v~l~y~e~ 315 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEH----DKRGENWSVPLTYSEN 315 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccc----cccccccceeeecccc
Confidence 3332221 1111 1233444556543 578999999998653321 000000000 000000000000001
Q ss_pred -hcCCCCCCcEEEEEecCCCC----cCCccccCCCccceeeecCC
Q 009263 164 -LDGFDTGKGVIFLAATNRRD----LLDPALLRPGRFDRKIRIRA 203 (539)
Q Consensus 164 -ld~~~~~~~vivIaatn~~~----~ld~al~r~gRf~~~i~v~~ 203 (539)
.+.+..+.++.||+|+|..+ .+|.||+| ||. .|++.+
T Consensus 316 d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 316 DEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 12356678999999999887 69999999 985 455543
No 179
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.15 E-value=4.7e-10 Score=123.00 Aligned_cols=191 Identities=20% Similarity=0.220 Sum_probs=123.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC--CCEEEEeCchhhHHHhhhhhHHHHHHHHHH---------HhCCCeEEEEeCcc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGSARIRDLFKRA---------KVNKPSVIFIDEID 128 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a---------~~~~p~Il~iDEiD 128 (539)
.++||.|+||||||++|++++..+. .||+.+..........|.. .+...+... ......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 4799999999999999999999875 4688776533333333321 111111100 01223499999999
Q ss_pred hhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC---cCCccccCCCc
Q 009263 129 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD---LLDPALLRPGR 194 (539)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-----------~~~~~vivIaatn~~~---~ld~al~r~gR 194 (539)
.+... +.+.|+..|+.- ..+.++.||+|+|..+ .+.++|+. |
T Consensus 95 rl~~~----------------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--R 150 (589)
T TIGR02031 95 LLDDG----------------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--R 150 (589)
T ss_pred hCCHH----------------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--h
Confidence 97643 334455555321 1134688999999765 68889999 9
Q ss_pred cceeeecCC-CCHHHHHHHHHHHhccCC----C---------------CCCC--C---HHHHHhh--CCCC-CHHHHHHH
Q 009263 195 FDRKIRIRA-PNAKGRTEILKIHASKVK----M---------------SDSV--D---LSSYAKN--LPGW-TGARLAQL 246 (539)
Q Consensus 195 f~~~i~v~~-P~~~er~~il~~~l~~~~----~---------------~~~~--~---~~~la~~--t~g~-s~~dl~~l 246 (539)
|..++.+.. |+.++|.+|++.++.... . ...+ . +..++.. ..|. +.+.-..+
T Consensus 151 f~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~ 230 (589)
T TIGR02031 151 LALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFA 230 (589)
T ss_pred ccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHH
Confidence 998877754 577788998887652110 0 0111 1 2222221 1233 35666677
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 247 VQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 247 v~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
++-|...|..++++.|+.+|+..|+.-+..
T Consensus 231 ~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 231 VRAAKAHAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999999999877653
No 180
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.14 E-value=9e-10 Score=117.32 Aligned_cols=210 Identities=24% Similarity=0.286 Sum_probs=126.1
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC----------EEEEeC
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------FYQMAG 92 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----------~~~~~~ 92 (539)
.+|.++.|+..+++.+.- .......++|+||||+|||++++.+++.+... ++.+.+
T Consensus 188 ~d~~~v~Gq~~~~~al~l--------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI--------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhe--------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 478889998877665431 12345679999999999999999998754210 111100
Q ss_pred c----------hhhH--------HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHH
Q 009263 93 S----------EFVE--------VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 154 (539)
Q Consensus 93 ~----------~~~~--------~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (539)
. -|.. ...|.+...-...+..|.. .+|||||++.+...
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~~~--------------------- 309 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFERR--------------------- 309 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCCHH---------------------
Confidence 0 0111 1222221111234444433 49999999886432
Q ss_pred HHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC---------------------cCCccccCCCccceeeecC
Q 009263 155 TTLNQLLIELDGF-----------DTGKGVIFLAATNRRD---------------------LLDPALLRPGRFDRKIRIR 202 (539)
Q Consensus 155 ~~l~~ll~~ld~~-----------~~~~~vivIaatn~~~---------------------~ld~al~r~gRf~~~i~v~ 202 (539)
++..|++.|+.- .-+.++.+|+|+|... .++.++++ |||.++.++
T Consensus 310 -~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~ 386 (506)
T PRK09862 310 -TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIP 386 (506)
T ss_pred -HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeC
Confidence 333444444211 1245789999999753 36778898 999999999
Q ss_pred CCCHHH----------HHHHHHHHh--------ccCCCCCCCC-------------HH---HHHhhCCCCCHHHHHHHHH
Q 009263 203 APNAKG----------RTEILKIHA--------SKVKMSDSVD-------------LS---SYAKNLPGWTGARLAQLVQ 248 (539)
Q Consensus 203 ~P~~~e----------r~~il~~~l--------~~~~~~~~~~-------------~~---~la~~t~g~s~~dl~~lv~ 248 (539)
.|+.++ ...+-+... .+..+...+. .. .-+....|.|.+....+++
T Consensus 387 ~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLr 466 (506)
T PRK09862 387 LPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK 466 (506)
T ss_pred CCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 885321 111111000 0001111111 11 1122344789999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHH
Q 009263 249 EAALVAVRKGHESILSSDMDDAVDR 273 (539)
Q Consensus 249 ~A~~~A~~~~~~~I~~~d~~~a~~~ 273 (539)
-|...|..++++.|+.+|+.+|+.-
T Consensus 467 vARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 467 VARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 9999999999999999999999863
No 181
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.14 E-value=8.7e-10 Score=110.62 Aligned_cols=72 Identities=36% Similarity=0.568 Sum_probs=54.4
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC--CCEEEEeCchhh
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFV 96 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~~~~~~~~ 96 (539)
..+....+.++|+.++.+..--+++.++..+ -.++++||.||||||||.||-++|+++| .||+.++++++.
T Consensus 17 ~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 17 GEARYIADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp S-B-SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred CCEeeccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 3444556789999999999998888887664 2567999999999999999999999996 899988887765
Q ss_pred H
Q 009263 97 E 97 (539)
Q Consensus 97 ~ 97 (539)
+
T Consensus 90 S 90 (398)
T PF06068_consen 90 S 90 (398)
T ss_dssp B
T ss_pred e
Confidence 3
No 182
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.12 E-value=4.3e-10 Score=121.17 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=122.9
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 98 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~ 98 (539)
..+|++++|.+...+.+.+.+..+.. .+..|||+|++||||+++|++|.+.. +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 36799999999998888877764432 23479999999999999999998754 679999999877543
Q ss_pred Hhhh-----hh--------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 009263 99 LVGV-----GS--------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 165 (539)
Q Consensus 99 ~~g~-----~~--------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 165 (539)
.... .. .....+|+.|. ...||||||+.|.... +..+..++++-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~~-------------------Q~~Ll~~L~~~~ 335 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLPL-------------------QTRLLRVLEERE 335 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHHH-------------------HHHHHHHHhcCc
Confidence 2211 00 01123344332 3489999999986442 222223332211
Q ss_pred --CCC----CCCcEEEEEecCCCC--cCCccccCCC---ccceeeecCCCCHHHHHH----HHHHHhccCCC--CCCCCH
Q 009263 166 --GFD----TGKGVIFLAATNRRD--LLDPALLRPG---RFDRKIRIRAPNAKGRTE----ILKIHASKVKM--SDSVDL 228 (539)
Q Consensus 166 --~~~----~~~~vivIaatn~~~--~ld~al~r~g---Rf~~~i~v~~P~~~er~~----il~~~l~~~~~--~~~~~~ 228 (539)
... .+.++.+|++||..- .+.....++. |+. .+.+..|...+|.+ ++.+++..... ...++-
T Consensus 336 ~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 414 (526)
T TIGR02329 336 VVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSE 414 (526)
T ss_pred EEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 111 122467888887532 1222111110 221 34566677766654 45555544311 111221
Q ss_pred H---H-------HHhh-CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHH
Q 009263 229 S---S-------YAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 270 (539)
Q Consensus 229 ~---~-------la~~-t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a 270 (539)
+ . |... .+| +.++|++++.++...+.......|+.+++...
T Consensus 415 ~a~~~~~~~~~~L~~y~WPG-NvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 415 AAAQVLAGVADPLQRYPWPG-NVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHHhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 1 1 3322 334 67788888887776543222356787876543
No 183
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.2e-09 Score=111.17 Aligned_cols=156 Identities=21% Similarity=0.310 Sum_probs=105.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhHHHhhhhhHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 112 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~f~ 112 (539)
+.+..+||+||+|+|||++|+++|+.+.+. ++.+....- . ...+...+|++..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 567789999999999999999999987431 222211100 0 0123355666665
Q ss_pred HHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 009263 113 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 188 (539)
Q Consensus 113 ~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~a 188 (539)
.+.. ....|++||++|.+.. ...|.||+.++. ++.++++|.+|+.++.+.|.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~----------------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~T 152 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR----------------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPT 152 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH----------------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHH
Confidence 5432 3456999999999753 456788888874 55678888899999999999
Q ss_pred ccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHH
Q 009263 189 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL 246 (539)
Q Consensus 189 l~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l 246 (539)
+++ |. ..+.|++|+.++..+.+...... ..+.+...++..+.| ++.....+
T Consensus 153 I~S--Rc-~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~A~~l 203 (328)
T PRK05707 153 IKS--RC-QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLRALQL 203 (328)
T ss_pred HHh--hc-eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHHHHHH
Confidence 998 75 46899999999888877655321 122234455666666 45444444
No 184
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.5e-09 Score=109.36 Aligned_cols=148 Identities=28% Similarity=0.380 Sum_probs=99.3
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC---------------------
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--------------------- 84 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--------------------- 84 (539)
++++|.+++...+......-. +.|..+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 367777877777765544211 2334699999999999999999999886
Q ss_pred ---CCEEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHH
Q 009263 85 ---VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 157 (539)
Q Consensus 85 ---~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (539)
..++.++.++-...- .....++++...... ....|++|||+|.+.. ...
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----------------------~A~ 126 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----------------------DAA 126 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH----------------------HHH
Confidence 356666666543311 123344444443322 2346999999999864 335
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHH
Q 009263 158 NQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEI 212 (539)
Q Consensus 158 ~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~i 212 (539)
|.++..++ .++.+..+|.+||.++.+-+.+++ | +..+.|++|+.......
T Consensus 127 nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--R-c~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 127 NALLKTLE--EPPKNTRFILITNDPSKILPTIRS--R-CQRIRFKPPSRLEAIAW 176 (325)
T ss_pred HHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--c-ceeeecCCchHHHHHHH
Confidence 66777776 355677888899999999888888 6 45778877554444433
No 185
>PRK04132 replication factor C small subunit; Provisional
Probab=99.11 E-value=1.4e-09 Score=121.81 Aligned_cols=172 Identities=20% Similarity=0.200 Sum_probs=122.7
Q ss_pred eEEEEC--CCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhC------CCeEEEEeCc
Q 009263 61 GVLLEG--PPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN------KPSVIFIDEI 127 (539)
Q Consensus 61 giLL~G--ppGtGKT~la~alA~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~------~p~Il~iDEi 127 (539)
.-+..| |++.|||++|+++|+++ +.+++.+++++..+ ...++..+..+... ...|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 356678 99999999999999998 56899999997533 23455555443322 2369999999
Q ss_pred chhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHH
Q 009263 128 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAK 207 (539)
Q Consensus 128 D~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~ 207 (539)
|.+... ..+.|+..|+. .+.++.+|++||.+..+.+++++ | +..+.|++|+.+
T Consensus 640 D~Lt~~----------------------AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--R-C~~i~F~~ls~~ 692 (846)
T PRK04132 640 DALTQD----------------------AQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--R-CAIFRFRPLRDE 692 (846)
T ss_pred ccCCHH----------------------HHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--h-ceEEeCCCCCHH
Confidence 998532 34567777763 34578888999999999999998 7 578999999999
Q ss_pred HHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 208 GRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 208 er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
+....++..+.+.++. ++..+..++..+.| +.+...++++.+... ...|+.+++....
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~~ 751 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLVA 751 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHHh
Confidence 9998888887765443 23347788888877 555555665544321 2357777665543
No 186
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.10 E-value=1.2e-09 Score=111.70 Aligned_cols=191 Identities=21% Similarity=0.258 Sum_probs=106.7
Q ss_pred ccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhh--
Q 009263 28 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV-- 102 (539)
Q Consensus 28 v~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~-- 102 (539)
++|.+...+.+.+.+..+.. ....|||+|++||||+++|++|.... +.||+.++|..+.......
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 46777777777666654432 33579999999999999999997654 5799999998764332111
Q ss_pred ---hh-------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc--CC---
Q 009263 103 ---GS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GF--- 167 (539)
Q Consensus 103 ---~~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld--~~--- 167 (539)
.. ......|..| ...+||||||+.|.... +..+..++..-. ..
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~~-------------------Q~~Ll~~l~~~~~~~~g~~ 128 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLLV-------------------QEKLLRVIEYGEFERVGGS 128 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHHH-------------------HHHHHHHHHcCcEEecCCC
Confidence 00 0011223333 34599999999976432 222223332211 00
Q ss_pred -CCCCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHHHH----HHHHHhccC----CCC--CCCC--
Q 009263 168 -DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS--DSVD-- 227 (539)
Q Consensus 168 -~~~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er~~----il~~~l~~~----~~~--~~~~-- 227 (539)
..+.++.+|++||..- .+.+.|.. |+. .+.+..|...+|.+ ++.+++... +.. ..++
T Consensus 129 ~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~ 205 (329)
T TIGR02974 129 QTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ 205 (329)
T ss_pred ceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH
Confidence 1124578888887531 23344444 553 34455566666544 445544321 211 2233
Q ss_pred -HHHHHhhC-CCCCHHHHHHHHHHHHHHH
Q 009263 228 -LSSYAKNL-PGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 228 -~~~la~~t-~g~s~~dl~~lv~~A~~~A 254 (539)
+..|.... +| +.++|++++..+...+
T Consensus 206 a~~~L~~y~WPG-NvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 206 AREQLLEYHWPG-NVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHhCCCCc-hHHHHHHHHHHHHHhC
Confidence 33333333 33 5667777777666544
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.3e-09 Score=112.16 Aligned_cols=154 Identities=29% Similarity=0.454 Sum_probs=107.1
Q ss_pred HHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE-eCchhhHHHhhhhhHHHHHHHHHHHhCCC
Q 009263 41 LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM-AGSEFVEVLVGVGSARIRDLFKRAKVNKP 119 (539)
Q Consensus 41 ~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~f~~a~~~~p 119 (539)
++..+++++. .+-..+||+||||+|||.||-.+|...+.||+.+ +..+.........-..++..|+.|.+..-
T Consensus 526 lv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 4445555553 3556799999999999999999999999999976 44444443333344568999999999988
Q ss_pred eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC-cEEEEEecCCCCcCCc-cccCCCccce
Q 009263 120 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK-GVIFLAATNRRDLLDP-ALLRPGRFDR 197 (539)
Q Consensus 120 ~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~-~vivIaatn~~~~ld~-al~r~gRf~~ 197 (539)
+||++|+|+.|..-.. ......+.++..|+..+....+.. ..+|++||...+.|.. .+.. .|+.
T Consensus 600 siivvDdiErLiD~vp------------IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~ 665 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVP------------IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSS 665 (744)
T ss_pred eEEEEcchhhhhcccc------------cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhh
Confidence 9999999999875432 133334556666666666554443 4677777766554432 3455 7899
Q ss_pred eeecCCCCH-HHHHHHHH
Q 009263 198 KIRIRAPNA-KGRTEILK 214 (539)
Q Consensus 198 ~i~v~~P~~-~er~~il~ 214 (539)
.+.+|.... ++..+++.
T Consensus 666 ~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 666 TIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred eeecCccCchHHHHHHHH
Confidence 999987665 55555544
No 188
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.1e-10 Score=120.12 Aligned_cols=210 Identities=25% Similarity=0.344 Sum_probs=124.4
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC---------CC-EEEEe
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VP-FYQMA 91 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---------~~-~~~~~ 91 (539)
...|.||+|++.+|..|.... ....++|++||||||||++|+.+..-+- .. +..++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 358999999999999997653 3456899999999999999999977441 00 00011
Q ss_pred Cc-----------hhh--------HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhH
Q 009263 92 GS-----------EFV--------EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 152 (539)
Q Consensus 92 ~~-----------~~~--------~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 152 (539)
+. -|. ...+|.+...--.-+. . ....||||||+-.+-
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIs--L-AH~GVLFLDElpef~--------------------- 296 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEIS--L-AHNGVLFLDELPEFK--------------------- 296 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCcee--e-ecCCEEEeeccchhh---------------------
Confidence 00 000 0011111000000000 1 112399999986643
Q ss_pred HHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-----------------------cCCccccCCCcccee
Q 009263 153 RETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-----------------------LLDPALLRPGRFDRK 198 (539)
Q Consensus 153 ~~~~l~~ll~~ld~~-----------~~~~~vivIaatn~~~-----------------------~ld~al~r~gRf~~~ 198 (539)
.++++.|-+-|+.- .-+.++.+|+++|..- .+...+++ |+|..
T Consensus 297 -~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~ 373 (490)
T COG0606 297 -RSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLM 373 (490)
T ss_pred -HHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhhe
Confidence 34566666655531 1134577888888422 14446777 99999
Q ss_pred eecCCCCHHHH--------------HHHHHHHh----ccCCC--CCC----------------CCHHHHHhhCCCCCHHH
Q 009263 199 IRIRAPNAKGR--------------TEILKIHA----SKVKM--SDS----------------VDLSSYAKNLPGWTGAR 242 (539)
Q Consensus 199 i~v~~P~~~er--------------~~il~~~l----~~~~~--~~~----------------~~~~~la~~t~g~s~~d 242 (539)
+.++.++..++ .++++.+- +..+. ... .++...+-..-++|.+.
T Consensus 374 vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~ 453 (490)
T COG0606 374 VEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARA 453 (490)
T ss_pred ecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHH
Confidence 99988764322 22222111 11111 111 11223344445778888
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 243 LAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 243 l~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
...+++-|..+|...+.+.|...|+.+|+.
T Consensus 454 ~~rILKvarTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 454 YHRILKVARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HHHHHHHHhhhhcccCcchhhHHHHHHHHh
Confidence 889999999999888888899999988875
No 189
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.08 E-value=8.6e-10 Score=120.52 Aligned_cols=207 Identities=24% Similarity=0.319 Sum_probs=120.9
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 96 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~ 96 (539)
.+..+|++++|.+...+++.+.+..+.. ....|||+|++|||||++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3456899999999998888877665442 23479999999999999999998875 5799999998775
Q ss_pred HHHhhh-----hh-------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHh
Q 009263 97 EVLVGV-----GS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 164 (539)
Q Consensus 97 ~~~~g~-----~~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 164 (539)
...... .. ......|.. ....+|||||||.|.... ...|+..+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~~----------------------Q~~Ll~~l 314 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPAF----------------------QAKLLRVL 314 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHHH----------------------HHHHHHHH
Confidence 432111 00 000011222 234599999999986442 22333333
Q ss_pred cC--CC---C----CCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHH----HHHHHHHhccCC---
Q 009263 165 DG--FD---T----GKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGR----TEILKIHASKVK--- 221 (539)
Q Consensus 165 d~--~~---~----~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er----~~il~~~l~~~~--- 221 (539)
+. +. . +.++.+|++|+..- .+.+.|.. |+. .+.+..|...+| ..++.+++....
T Consensus 315 ~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~ 391 (534)
T TIGR01817 315 QEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNREN 391 (534)
T ss_pred hcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHc
Confidence 21 11 1 12478888887431 12222222 332 334444555444 445566654321
Q ss_pred -CCCCCC---HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHH
Q 009263 222 -MSDSVD---LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMD 268 (539)
Q Consensus 222 -~~~~~~---~~~la~~t-~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~ 268 (539)
....++ +..|.... +| +.++|+++++.|...+ ....|+.+|+.
T Consensus 392 ~~~~~~s~~a~~~L~~~~WPG-NvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 392 GRPLTITPSAIRVLMSCKWPG-NVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred CCCCCCCHHHHHHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 112233 34444443 34 6777777777776543 34568877764
No 190
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.2e-10 Score=110.32 Aligned_cols=130 Identities=30% Similarity=0.406 Sum_probs=83.0
Q ss_pred ccCcHHHHHHHHHHHH----HhcChhhhhhcCCCC-CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH-HHhh
Q 009263 28 VAGIDEAVEELQELVR----YLKNPELFDKMGIKP-PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG 101 (539)
Q Consensus 28 v~G~~~~k~~L~~~v~----~l~~~~~~~~~g~~~-~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~-~~~g 101 (539)
|+|++.+|+-|.-.+- .+.+... .-.... ..++||.||+|||||+||+.+|+.+++||...++..+.+ .|+|
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~--~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKED--NDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCC--CCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 7888888876643221 1221110 001222 246999999999999999999999999999999888875 4888
Q ss_pred hhhHHH-HHHHHHH----HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC
Q 009263 102 VGSARI-RDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 167 (539)
Q Consensus 102 ~~~~~~-~~~f~~a----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 167 (539)
....++ .+++..| .+....|++|||||.+..+..+.+-- .+ .+. ..+...||..++|-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SIT--RD---VSG---EGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSIT--RD---VSG---EGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcc--cc---cCc---hHHHHHHHHHHcCc
Confidence 766654 3444433 12234599999999999876432110 00 022 23455677777763
No 191
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.07 E-value=2e-09 Score=110.08 Aligned_cols=193 Identities=20% Similarity=0.253 Sum_probs=109.8
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHH--
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL-- 99 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~-- 99 (539)
+++++|.+...+.+.+.+..+.. .+..|||+|++||||+++|+++.... +.||+.++|..+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 67899999998888777665432 34579999999999999999997654 5799999999864321
Q ss_pred ---hhhhh-------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc--CC
Q 009263 100 ---VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GF 167 (539)
Q Consensus 100 ---~g~~~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld--~~ 167 (539)
.|... ......|.. .....|||||||.|.... +..+..++..-. ..
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~~-------------------Q~~L~~~l~~~~~~~~ 132 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMLV-------------------QEKLLRVIEYGELERV 132 (326)
T ss_pred HHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHHH-------------------HHHHHHHHhcCcEEeC
Confidence 11100 001122333 234589999999986442 122223332211 00
Q ss_pred ----CCCCcEEEEEecCCC-------CcCCccccCCCccceeeecCCCCHHHHHH----HHHHHhccC----CCC--CCC
Q 009263 168 ----DTGKGVIFLAATNRR-------DLLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS--DSV 226 (539)
Q Consensus 168 ----~~~~~vivIaatn~~-------~~ld~al~r~gRf~~~i~v~~P~~~er~~----il~~~l~~~----~~~--~~~ 226 (539)
..+.++.||++|+.. ..+.+.|.. ||. .+.+..|...+|.+ ++.+++... +.. ..+
T Consensus 133 g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~ 209 (326)
T PRK11608 133 GGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGF 209 (326)
T ss_pred CCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 011357888888753 234455555 553 23455566666544 555554332 211 233
Q ss_pred CHHH---HHhh-CCCCCHHHHHHHHHHHHHH
Q 009263 227 DLSS---YAKN-LPGWTGARLAQLVQEAALV 253 (539)
Q Consensus 227 ~~~~---la~~-t~g~s~~dl~~lv~~A~~~ 253 (539)
+-+. |... .+| +.++|+++++.|...
T Consensus 210 s~~al~~L~~y~WPG-NvrEL~~vl~~a~~~ 239 (326)
T PRK11608 210 TERARETLLNYRWPG-NIRELKNVVERSVYR 239 (326)
T ss_pred CHHHHHHHHhCCCCc-HHHHHHHHHHHHHHh
Confidence 3333 3332 233 566677777766544
No 192
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.06 E-value=2.3e-09 Score=116.36 Aligned_cols=209 Identities=18% Similarity=0.298 Sum_probs=117.6
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 96 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~ 96 (539)
....+|++++|.+...+++.+.+..+.. ....+||+|++||||+++|+++.... +.||+.++|..+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3567899999999887777666553322 23469999999999999999986654 5799999998875
Q ss_pred HHHh-----hhhh-------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHh
Q 009263 97 EVLV-----GVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 164 (539)
Q Consensus 97 ~~~~-----g~~~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 164 (539)
.... |... .....+|+.| ....|||||||.+.... +..+..++..-
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~~-------------------Q~~Ll~~l~~~ 325 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPRM-------------------QAKLLRFLNDG 325 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHHH-------------------HHHHHHHHhcC
Confidence 4321 1110 0112234433 34589999999986442 22222333221
Q ss_pred --cCC----CCCCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHHHH----HHHHHhcc----CCCC
Q 009263 165 --DGF----DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASK----VKMS 223 (539)
Q Consensus 165 --d~~----~~~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er~~----il~~~l~~----~~~~ 223 (539)
... ....++.||+||+.+- .+.+.|.. |+. .+.+..|...+|.+ ++.+++.. .+..
T Consensus 326 ~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~ 402 (520)
T PRK10820 326 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP 402 (520)
T ss_pred CcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC
Confidence 001 1123577888877532 13333444 443 35566676666653 33444432 2211
Q ss_pred -CCCCHH---HHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhH
Q 009263 224 -DSVDLS---SYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDM 267 (539)
Q Consensus 224 -~~~~~~---~la~~-t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~ 267 (539)
..++-+ .|... .+| +.++|++++.+|...+ ....|+.+|+
T Consensus 403 ~~~ls~~a~~~L~~y~WPG-NvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 403 RPKLAADLNTVLTRYGWPG-NVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred CCCcCHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 223333 33333 233 4566666666665443 3446777764
No 193
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.05 E-value=1.3e-09 Score=118.15 Aligned_cols=193 Identities=24% Similarity=0.303 Sum_probs=116.5
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHh
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 100 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~ 100 (539)
++.+++|.+...+.+.+.+..+.. .+..|||+|++||||+++|++|.... +.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 678999999998888877765432 34579999999999999999998864 57999999988754321
Q ss_pred h-----hhh-------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-
Q 009263 101 G-----VGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF- 167 (539)
Q Consensus 101 g-----~~~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~- 167 (539)
. ... ......|..| ....|||||||.|.... ...|+..++.-
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~~----------------------Q~~Ll~~l~~~~ 309 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLAL----------------------QAKLLRVLQYGE 309 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHHH----------------------HHHHHHHHhcCC
Confidence 1 100 0011124332 34589999999986432 22333333211
Q ss_pred --------CCCCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHHHH----HHHHHhccC----CC-C
Q 009263 168 --------DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KM-S 223 (539)
Q Consensus 168 --------~~~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er~~----il~~~l~~~----~~-~ 223 (539)
....++.+|++||..- .+.+.|.. |+. .+.+..|...+|.+ ++++++.+. +. .
T Consensus 310 ~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~ 386 (509)
T PRK05022 310 IQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRS 386 (509)
T ss_pred EeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCC
Confidence 1123578888888532 12233332 332 34566677766654 444454432 11 1
Q ss_pred CCCC---HHHHHhh-CCCCCHHHHHHHHHHHHHHHH
Q 009263 224 DSVD---LSSYAKN-LPGWTGARLAQLVQEAALVAV 255 (539)
Q Consensus 224 ~~~~---~~~la~~-t~g~s~~dl~~lv~~A~~~A~ 255 (539)
..++ +..|... .+| +.++|++++++|...+.
T Consensus 387 ~~~s~~a~~~L~~y~WPG-NvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 387 LRLSPAAQAALLAYDWPG-NVRELEHVISRAALLAR 421 (509)
T ss_pred CCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhcC
Confidence 2233 3334333 234 78888888888887764
No 194
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.04 E-value=7.8e-10 Score=113.46 Aligned_cols=197 Identities=25% Similarity=0.326 Sum_probs=119.9
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHh----cCCCEEEEeCchhh
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE----AGVPFYQMAGSEFV 96 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~----~~~~~~~~~~~~~~ 96 (539)
....+.+++|.+...+++++-+..+- .....||+.|++||||+.+|++|... .+.||+.+||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 45678999999999888877766521 23457999999999999999999643 36799999999887
Q ss_pred HHHhhh------------hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHh
Q 009263 97 EVLVGV------------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 164 (539)
Q Consensus 97 ~~~~g~------------~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 164 (539)
+..... ....-..+|+.|. ..+||+|||+.+.... +. .|+..|
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP~~~-------------------Q~---kLl~~l 197 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLPPEG-------------------QE---KLLRVL 197 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCCHhH-------------------HH---HHHHHH
Confidence 653321 1112234455443 2399999999986432 22 333433
Q ss_pred cC-----C----CCCCcEEEEEecCCC--CcCCc--cccCCCccceeeecCCCCHHHHHH----HHHHHhc----cCCCC
Q 009263 165 DG-----F----DTGKGVIFLAATNRR--DLLDP--ALLRPGRFDRKIRIRAPNAKGRTE----ILKIHAS----KVKMS 223 (539)
Q Consensus 165 d~-----~----~~~~~vivIaatn~~--~~ld~--al~r~gRf~~~i~v~~P~~~er~~----il~~~l~----~~~~~ 223 (539)
+. + ....+|.+|+|||.. +.+-. .+.+. |+..+ +..|+..+|.. ++++++. +.+..
T Consensus 198 e~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~--I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~ 274 (403)
T COG1221 198 EEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILT--ITLPPLRERKEDILLLAEHFLKSEARRLGLP 274 (403)
T ss_pred HcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCce--ecCCChhhchhhHHHHHHHHHHHHHHHcCCC
Confidence 32 1 123568889888731 12222 33330 34444 44566665533 4444443 34433
Q ss_pred CCCCH----HHHHhh-CCCCCHHHHHHHHHHHHHHHHH
Q 009263 224 DSVDL----SSYAKN-LPGWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 224 ~~~~~----~~la~~-t~g~s~~dl~~lv~~A~~~A~~ 256 (539)
...+. ..+-.. .+| +.++|++++..+...+..
T Consensus 275 ~~~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 275 LSVDSPEALRALLAYDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred CCCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHhcc
Confidence 32222 222222 355 788999999988877743
No 195
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.04 E-value=5.8e-10 Score=102.96 Aligned_cols=113 Identities=31% Similarity=0.402 Sum_probs=72.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCC----CEEEEeCchhhHHHhhhhhHHHHHHHHHH----HhCCCeEEEEeCcch
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGV----PFYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDA 129 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~f~~a----~~~~p~Il~iDEiD~ 129 (539)
|-..+||.||+|+|||.+|+++|..+.. +++.++++.+... ......+..++..+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3456899999999999999999999996 9999999998771 11111111111111 111112999999999
Q ss_pred hhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC---------CCCCcEEEEEecCCCC
Q 009263 130 LATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---------DTGKGVIFLAATNRRD 183 (539)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~---------~~~~~vivIaatn~~~ 183 (539)
.....+.. .+.....+.+.||+.+++- ..-.++++|+|+|.-.
T Consensus 80 a~~~~~~~-----------~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGG-----------ADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTC-----------SHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccccc-----------chhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 88752110 2333446667777776531 1125689999999644
No 196
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.04 E-value=3.6e-09 Score=118.15 Aligned_cols=208 Identities=20% Similarity=0.291 Sum_probs=120.6
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 98 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~ 98 (539)
..+|++++|.+...+++.+.+..+.. ....|||+|++||||+++|+++.+.. +.||+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999887777766554332 23469999999999999999998865 579999999876432
Q ss_pred -----Hhhhh--h--HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--
Q 009263 99 -----LVGVG--S--ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-- 167 (539)
Q Consensus 99 -----~~g~~--~--~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-- 167 (539)
+.|.. . ......|+. ....+||||||+.+.... ...|+..++.-
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~~----------------------Q~~Ll~~l~~~~~ 445 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPEL----------------------QSALLQVLKTGVI 445 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHHH----------------------HHHHHHHHhcCcE
Confidence 22211 0 000112322 234689999999976442 12333333211
Q ss_pred ---CC----CCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHHHH----HHHHHhccC----CCCCC
Q 009263 168 ---DT----GKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMSDS 225 (539)
Q Consensus 168 ---~~----~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er~~----il~~~l~~~----~~~~~ 225 (539)
.. +-++.+|+||+..- .+.+.|.. |+. .+.+..|...+|.+ ++.+++... .....
T Consensus 446 ~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~ 522 (638)
T PRK11388 446 TRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK 522 (638)
T ss_pred EeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 11 12577888888532 11222221 221 45566677777643 445554432 11112
Q ss_pred CC---HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 226 VD---LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 226 ~~---~~~la~~t-~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
++ +..|.... +| +.++|+++++.|...+ ....|+.+|+...+
T Consensus 523 ~s~~a~~~L~~y~WPG-NvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 523 IDDDALARLVSYRWPG-NDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred cCHHHHHHHHcCCCCC-hHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 33 34444443 34 6777777777766543 34567877776554
No 197
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2e-09 Score=105.49 Aligned_cols=70 Identities=30% Similarity=0.538 Sum_probs=51.6
Q ss_pred cccCcHHHHHHHHHHHHH-hcChhhhhhc-CCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 27 DVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~-l~~~~~~~~~-g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
-|+|++++|..+.-.++. .+....-..+ .--.|+++|..||+|+|||-+||.+|+-++.||+.+-+..|.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 489999999988766552 2221111111 123689999999999999999999999999999987665543
No 198
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.3e-09 Score=111.49 Aligned_cols=149 Identities=20% Similarity=0.240 Sum_probs=104.7
Q ss_pred CcCcccC-cHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC----------------
Q 009263 24 KFSDVAG-IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---------------- 86 (539)
Q Consensus 24 ~~~dv~G-~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~---------------- 86 (539)
.|+.|+| ++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+..+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 88898888877642 2456678999999999999999999986321
Q ss_pred --------EEEEeCchhhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHH
Q 009263 87 --------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 154 (539)
Q Consensus 87 --------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (539)
+..+... . ...+...++.+.+.+. .....|++|||+|.+..
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------------- 124 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------------- 124 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH----------------------
Confidence 2222111 0 0012234555554443 12345999999998742
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHH
Q 009263 155 TTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 215 (539)
Q Consensus 155 ~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~ 215 (539)
...|.||..++. ++.++++|.+|+.+..+.+.+++ | +..++|++|+.++..+.++.
T Consensus 125 ~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--R-c~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 125 SAANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--R-CQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--h-ceeeeCCCCCHHHHHHHHHH
Confidence 346788888874 55677777788888899999998 6 46889999999887776653
No 199
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.03 E-value=6.8e-09 Score=110.74 Aligned_cols=194 Identities=18% Similarity=0.251 Sum_probs=124.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc----------CCCEEEEeCchhhHH---Hh-------hh------hhHHHHHHHHH
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGSEFVEV---LV-------GV------GSARIRDLFKR 113 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~----------~~~~~~~~~~~~~~~---~~-------g~------~~~~~~~~f~~ 113 (539)
.++++.|-||||||.+++.+.+++ ..+++.+++-.+.+. |. |. +...+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 368999999999999999998866 356777877655432 11 11 11122223331
Q ss_pred H-HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc----CCcc
Q 009263 114 A-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL----LDPA 188 (539)
Q Consensus 114 a-~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~----ld~a 188 (539)
. -...++||+|||+|.|..+.+ .+++.++.+-. .++..++||+..|..+. |...
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~Q-------------------dVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nr 561 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRSQ-------------------DVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNR 561 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcccH-------------------HHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccc
Confidence 1 234678999999999987653 33444443321 34456888888876553 2223
Q ss_pred ccCCCccc-eeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHhCC------
Q 009263 189 LLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGW--TGARLAQLVQEAALVAVRKGH------ 259 (539)
Q Consensus 189 l~r~gRf~-~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~--s~~dl~~lv~~A~~~A~~~~~------ 259 (539)
..+ |++ ..|.|.+++..+.++|+...+.....-.+.-++-+|+.-... +.+....+|++|...|..+..
T Consensus 562 vsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~ 639 (767)
T KOG1514|consen 562 VSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAV 639 (767)
T ss_pred hhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccc
Confidence 333 555 378899999999999999999876333222233334433222 345566778999988876654
Q ss_pred -CCCchhhHHHHHHHHhc
Q 009263 260 -ESILSSDMDDAVDRLTV 276 (539)
Q Consensus 260 -~~I~~~d~~~a~~~~~~ 276 (539)
..|++.|+.+|+..+..
T Consensus 640 ~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 640 SQLVGILHVMEAINEMLA 657 (767)
T ss_pred cceeehHHHHHHHHHHhh
Confidence 45778888888877654
No 200
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.01 E-value=1.8e-08 Score=96.49 Aligned_cols=184 Identities=18% Similarity=0.200 Sum_probs=124.2
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC---CEEE--
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---PFYQ-- 89 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~~~~-- 89 (539)
+|..++.+.+|+.+.+.++....|..+...-.. .++++|||+|+||-|.+.++-+++.. +=+.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~------------PHll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDF------------PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCC------------CeEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 688899999999999999998888876542112 37899999999999999999998721 1111
Q ss_pred ----------------EeCchhhHHH---hhhhh-HHHHHHHHHHHhCC---------CeEEEEeCcchhhhhhcCCcCC
Q 009263 90 ----------------MAGSEFVEVL---VGVGS-ARIRDLFKRAKVNK---------PSVIFIDEIDALATRRQGIFKD 140 (539)
Q Consensus 90 ----------------~~~~~~~~~~---~g~~~-~~~~~~f~~a~~~~---------p~Il~iDEiD~l~~~~~~~~~~ 140 (539)
++.....+.. .|... -.+.++++...+.. -.+|+|-|.|.|....+.
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~---- 145 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQH---- 145 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHH----
Confidence 1111111111 11111 22455555543332 359999999998765432
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccC
Q 009263 141 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV 220 (539)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~ 220 (539)
....+ |+.+ ..++.+|..+|....+-+++++ | +..|.+|.|+.++...++...+.+.
T Consensus 146 -----------aLRRT-------MEkY--s~~~RlIl~cns~SriIepIrS--R-Cl~iRvpaps~eeI~~vl~~v~~kE 202 (351)
T KOG2035|consen 146 -----------ALRRT-------MEKY--SSNCRLILVCNSTSRIIEPIRS--R-CLFIRVPAPSDEEITSVLSKVLKKE 202 (351)
T ss_pred -----------HHHHH-------HHHH--hcCceEEEEecCcccchhHHhh--h-eeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 11222 2222 2456778899999999999998 6 4678999999999999999999887
Q ss_pred CCCCCCC-HHHHHhhCCC
Q 009263 221 KMSDSVD-LSSYAKNLPG 237 (539)
Q Consensus 221 ~~~~~~~-~~~la~~t~g 237 (539)
++..+.+ +..++..+.|
T Consensus 203 ~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 203 GLQLPKELLKRIAEKSNR 220 (351)
T ss_pred cccCcHHHHHHHHHHhcc
Confidence 7765433 5666776655
No 201
>PRK08116 hypothetical protein; Validated
Probab=98.99 E-value=2.4e-09 Score=106.16 Aligned_cols=69 Identities=26% Similarity=0.462 Sum_probs=49.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhh----hhHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV----GSARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~----~~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
+.|++|+|+||||||+||.++++++ +.++++++..++...+... .......++... ....+|+|||++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccC
Confidence 4589999999999999999999986 7899999988877654322 111122333332 2345999999964
No 202
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.98 E-value=9.7e-09 Score=115.54 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=115.4
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 98 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~ 98 (539)
+.+|++++|.+...+.+.+.+..+.. ....|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 46789999999998888777665432 23479999999999999999998754 679999999876432
Q ss_pred -----Hhhhh-------hHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc-
Q 009263 99 -----LVGVG-------SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD- 165 (539)
Q Consensus 99 -----~~g~~-------~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld- 165 (539)
+.|.. .......|..+ ...+||||||+.+.... +..+..++..-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~~~~-------------------Q~~L~~~l~~~~~ 499 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMPLEL-------------------QPKLLRVLQEQEF 499 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCCHHH-------------------HHHHHHHHHhCCE
Confidence 11210 01112234433 34699999999976432 122223332211
Q ss_pred -CC----CCCCcEEEEEecCCCC--cCCccccCCC---ccceeeecCCCCHHHHHH----HHHHHhccC----CCC-CCC
Q 009263 166 -GF----DTGKGVIFLAATNRRD--LLDPALLRPG---RFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS-DSV 226 (539)
Q Consensus 166 -~~----~~~~~vivIaatn~~~--~ld~al~r~g---Rf~~~i~v~~P~~~er~~----il~~~l~~~----~~~-~~~ 226 (539)
.. ....++.+|++|+..- .+.....++. |+. .+.+..|...+|.+ ++++++.+. +.. ..+
T Consensus 500 ~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~ 578 (686)
T PRK15429 500 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSI 578 (686)
T ss_pred EeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 01 1124678888887532 1221111110 221 45566777777755 445554432 111 112
Q ss_pred C---HHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 009263 227 D---LSSYAKN-LPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 227 ~---~~~la~~-t~g~s~~dl~~lv~~A~~~A 254 (539)
+ +..|... .+| +.++|++++++|...+
T Consensus 579 s~~al~~L~~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 579 PAETLRTLSNMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred CHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhC
Confidence 2 3333333 234 6778888888777654
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.94 E-value=9.9e-09 Score=104.50 Aligned_cols=216 Identities=22% Similarity=0.376 Sum_probs=127.4
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC-------CCEEEE---
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFYQM--- 90 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-------~~~~~~--- 90 (539)
-+..|.-++|++..|..|--- --+| .-.|+||-|+.|||||+++|+|+.-+. +||-.-
T Consensus 12 ~~~pf~aivGqd~lk~aL~l~---av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 12 ENLPFTAIVGQDPLKLALGLN---AVDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred hccchhhhcCchHHHHHHhhh---hccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 356789999999998876421 1222 224799999999999999999999772 222100
Q ss_pred ---eCch-------------------hhHHHhhhhhHHH------HHHHH----------HHHhCCCeEEEEeCcchhhh
Q 009263 91 ---AGSE-------------------FVEVLVGVGSARI------RDLFK----------RAKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 91 ---~~~~-------------------~~~~~~g~~~~~~------~~~f~----------~a~~~~p~Il~iDEiD~l~~ 132 (539)
.|.. +.....+.++.++ .+..+ .|+. .-.||++||+..|..
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~d 158 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLDD 158 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccccH
Confidence 0010 1111223333322 11111 1111 224999999988753
Q ss_pred hhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc---------C--CCCCCcEEEEEecCCCC-cCCccccCCCccceeee
Q 009263 133 RRQGIFKDTTDHLYNAATQERETTLNQLLIELD---------G--FDTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIR 200 (539)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld---------~--~~~~~~vivIaatn~~~-~ld~al~r~gRf~~~i~ 200 (539)
+.++.||..+. | +..+.++++|+|+|..+ .|-|.|++ ||...+.
T Consensus 159 ----------------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~ 214 (423)
T COG1239 159 ----------------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVD 214 (423)
T ss_pred ----------------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceee
Confidence 23444554432 2 23356799999999755 68899999 9999999
Q ss_pred cCCC-CHHHHHHHHHHHhccCCCCCC--------------------------CC--------HHHHHhh--CCCCCHHHH
Q 009263 201 IRAP-NAKGRTEILKIHASKVKMSDS--------------------------VD--------LSSYAKN--LPGWTGARL 243 (539)
Q Consensus 201 v~~P-~~~er~~il~~~l~~~~~~~~--------------------------~~--------~~~la~~--t~g~s~~dl 243 (539)
+..| +.++|.+|++..+... ..++ +. +..++.. ..| ..+++
T Consensus 215 ~~~~~~~~~rv~Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi 292 (423)
T COG1239 215 THYPLDLEERVEIIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRADI 292 (423)
T ss_pred ccCCCCHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-Cchhh
Confidence 8766 6788888887655431 1111 00 0111111 111 12222
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 244 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 244 ~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
.+++-|...|.-+|+..++.+|+++|......
T Consensus 293 -~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~ 324 (423)
T COG1239 293 -VVVRAAKALAALRGRTEVEEEDIREAAELALL 324 (423)
T ss_pred -HHHHHHHHHHHhcCceeeehhhHHHHHhhhhh
Confidence 23455666677778888888888888876544
No 204
>PRK12377 putative replication protein; Provisional
Probab=98.93 E-value=9.8e-09 Score=100.20 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=64.7
Q ss_pred ecCCCCcCcCcccC----cHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEE
Q 009263 17 SQGSTGVKFSDVAG----IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQ 89 (539)
Q Consensus 17 ~~~~~~~~~~dv~G----~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~ 89 (539)
.......+|++... ...+......++..+. ....+++|+||||||||+||.++|+++ +..+++
T Consensus 65 ~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~ 134 (248)
T PRK12377 65 QPLHRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV 134 (248)
T ss_pred CcccccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 34456667887753 2234444444433221 123589999999999999999999987 677888
Q ss_pred EeCchhhHHHhhhhhH--HHHHHHHHHHhCCCeEEEEeCcchh
Q 009263 90 MAGSEFVEVLVGVGSA--RIRDLFKRAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 90 ~~~~~~~~~~~g~~~~--~~~~~f~~a~~~~p~Il~iDEiD~l 130 (539)
++..++.......... .....+... ...++|+|||++..
T Consensus 135 i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 135 VTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred EEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 8888877754322111 112333332 45669999999764
No 205
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.92 E-value=1.7e-08 Score=102.33 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=56.6
Q ss_pred CcC-cccCcHHHHHHHHHHHHHhcChhhhhhcCC-CCCceEEEECCCCCcHHHHHHHHHHhcCC-------CEEEEeC--
Q 009263 24 KFS-DVAGIDEAVEELQELVRYLKNPELFDKMGI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFYQMAG-- 92 (539)
Q Consensus 24 ~~~-dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~~~~~-- 92 (539)
-|+ ++.|++++++++.+.+..... |. ...+.++|+||||+|||+||++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~-------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ-------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 366 899999997777665543221 22 23467899999999999999999999976 8998877
Q ss_pred --chhhHHHhhhhhHHHHHHH
Q 009263 93 --SEFVEVLVGVGSARIRDLF 111 (539)
Q Consensus 93 --~~~~~~~~g~~~~~~~~~f 111 (539)
+.+.+..++......+..|
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCCCCccCCcccCCHHHHHHH
Confidence 5555444444334433333
No 206
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.90 E-value=1.4e-08 Score=93.03 Aligned_cols=133 Identities=29% Similarity=0.452 Sum_probs=86.3
Q ss_pred CcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC-----------------------C
Q 009263 30 GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------------------P 86 (539)
Q Consensus 30 G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~-----------------------~ 86 (539)
|++++++.|.+.+..- +.|..+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7788888887766532 45667899999999999999999997622 1
Q ss_pred EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHH
Q 009263 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 162 (539)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 162 (539)
++.++...... ......++.+...+.. ....|++|||+|.+.. ...|.||.
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~----------------------~a~NaLLK 124 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE----------------------EAQNALLK 124 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H----------------------HHHHHHHH
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH----------------------HHHHHHHH
Confidence 22332221100 1123456666555432 2456999999999753 45678888
Q ss_pred HhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCC
Q 009263 163 ELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 203 (539)
Q Consensus 163 ~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~ 203 (539)
.|+ +++.++++|.+|+.++.+-+.+++ |. ..+.|++
T Consensus 125 ~LE--epp~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 125 TLE--EPPENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp HHH--STTTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred Hhc--CCCCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 887 456788888999999999999998 74 4566654
No 207
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.89 E-value=1.3e-08 Score=99.47 Aligned_cols=193 Identities=18% Similarity=0.189 Sum_probs=119.2
Q ss_pred chhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE--
Q 009263 12 YFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ-- 89 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~-- 89 (539)
+..=|++++++..+.|+++++++...+.++...-+.| +.|+|||||||||+...+.|+.+..|.-+
T Consensus 27 ~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lP------------h~L~YgPPGtGktsti~a~a~~ly~~~~~~~ 94 (360)
T KOG0990|consen 27 YPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLP------------HLLFYGPPGTGKTSTILANARDFYSPHPTTS 94 (360)
T ss_pred cCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCC------------cccccCCCCCCCCCchhhhhhhhcCCCCchh
Confidence 4455889999999999999999988887763322222 78999999999999999999998765111
Q ss_pred ----EeCchhhHHHhhhhh-HHHHHHHHHHHh-------CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHH
Q 009263 90 ----MAGSEFVEVLVGVGS-ARIRDLFKRAKV-------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 157 (539)
Q Consensus 90 ----~~~~~~~~~~~g~~~-~~~~~~f~~a~~-------~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (539)
++.++- .|-.. +.-...|..++. ..+..+++||.|+.....+
T Consensus 95 m~lelnaSd~----rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ---------------------- 148 (360)
T KOG0990|consen 95 MLLELNASDD----RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ---------------------- 148 (360)
T ss_pred HHHHhhccCc----cCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH----------------------
Confidence 111110 11111 112234444442 2667999999999875543
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCC
Q 009263 158 NQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLP 236 (539)
Q Consensus 158 ~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~ 236 (539)
|.|-..+..+.. ++.++.-+|.+..+.|++++ ||. .+.+.+-+...-...+.+++.........+ ...+++.
T Consensus 149 nALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~-- 221 (360)
T KOG0990|consen 149 NALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL-- 221 (360)
T ss_pred HHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH--
Confidence 222233333333 44555678999999999997 764 455666666666666777765543332211 2333333
Q ss_pred CCCHHHHHHHHHHHH
Q 009263 237 GWTGARLAQLVQEAA 251 (539)
Q Consensus 237 g~s~~dl~~lv~~A~ 251 (539)
|-.|.+..++-.-
T Consensus 222 --s~gDmr~a~n~Lq 234 (360)
T KOG0990|consen 222 --SVGDMRVALNYLQ 234 (360)
T ss_pred --hHHHHHHHHHHHH
Confidence 3346665555443
No 208
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.89 E-value=9.4e-09 Score=94.62 Aligned_cols=93 Identities=28% Similarity=0.465 Sum_probs=61.9
Q ss_pred ccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHH-----
Q 009263 28 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----- 99 (539)
Q Consensus 28 v~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~----- 99 (539)
|+|.+...+++.+.+..+.. .+..|||+|++||||+.+|++|-+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57888887777776664332 34589999999999999999998865 5799999998875442
Q ss_pred hhhhh-------HHHHHHHHHHHhCCCeEEEEeCcchhhhh
Q 009263 100 VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATR 133 (539)
Q Consensus 100 ~g~~~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~ 133 (539)
.|... .....+|+.|.. .+||||||+.|...
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~ 108 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE 108 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHHH
Confidence 22110 112356666544 39999999998644
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.87 E-value=2.2e-08 Score=97.50 Aligned_cols=105 Identities=17% Similarity=0.294 Sum_probs=67.4
Q ss_pred ecCCCCcCcCccc-CcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009263 17 SQGSTGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 92 (539)
Q Consensus 17 ~~~~~~~~~~dv~-G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~ 92 (539)
.+...+.+|++.. +.+..+..+..+..+..... ....+++|+|+||||||+|+.++|+++ +.++++++.
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 4445677888875 33333333433333332221 113489999999999999999999988 778899988
Q ss_pred chhhHHHhhhh---hHHHHHHHHHHHhCCCeEEEEeCcchh
Q 009263 93 SEFVEVLVGVG---SARIRDLFKRAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 93 ~~~~~~~~g~~---~~~~~~~f~~a~~~~p~Il~iDEiD~l 130 (539)
.++...+.... ......++... ..+++|+|||++..
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 136 ADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 88876543321 11223344443 35679999999874
No 210
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.87 E-value=3.8e-08 Score=109.90 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=74.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC-------CCEEEEeCchhhHHHh-hhhhHHH-HHHHHHHHhCCCeEEEEeCc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFYQMAGSEFVEVLV-GVGSARI-RDLFKRAKVNKPSVIFIDEI 127 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~-------~~~~~~~~~~~~~~~~-g~~~~~~-~~~f~~a~~~~p~Il~iDEi 127 (539)
+...+|||+|+||||||.+|+++++... .++..+.+..+..... ..+...+ ...+. .....+++|||+
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLv---lAdgGtL~IDEi 566 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVV---LANGGVCCIDEL 566 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEE---EcCCCeEEecch
Confidence 4455799999999999999999998653 3444433332211000 0000000 00111 122359999999
Q ss_pred chhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-------------
Q 009263 128 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD------------- 183 (539)
Q Consensus 128 D~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-----------~~~~~vivIaatn~~~------------- 183 (539)
|.+.... + ..|+..|+.- .-+.++.||||+|+..
T Consensus 567 dkms~~~-------------------Q---~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni 624 (915)
T PTZ00111 567 DKCHNES-------------------R---LSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENI 624 (915)
T ss_pred hhCCHHH-------------------H---HHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCccccc
Confidence 9975432 1 2333334321 1235689999999742
Q ss_pred cCCccccCCCccceeee-cCCCCHHHHHHH
Q 009263 184 LLDPALLRPGRFDRKIR-IRAPNAKGRTEI 212 (539)
Q Consensus 184 ~ld~al~r~gRf~~~i~-v~~P~~~er~~i 212 (539)
.++++|++ |||.++- ++.|+.+.=..|
T Consensus 625 ~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 625 NISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred CCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 37789999 9998654 456665544444
No 211
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.87 E-value=1.1e-09 Score=94.29 Aligned_cols=109 Identities=28% Similarity=0.411 Sum_probs=56.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc-h-hhHHHhhhhhHHHH-HHHHHHHhCC---CeEEEEeCcchhhhhh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-E-FVEVLVGVGSARIR-DLFKRAKVNK---PSVIFIDEIDALATRR 134 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~-~-~~~~~~g~~~~~~~-~~f~~a~~~~---p~Il~iDEiD~l~~~~ 134 (539)
++||+|+||+|||++|+++|+.++..|..+.+. + +.+...|...-... ..|.. ... ..|+++|||.+..++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNrappkt 78 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRAPPKT 78 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS-HHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccCCHHH
Confidence 589999999999999999999999999887664 2 22333332110000 00100 011 1399999999865543
Q ss_pred cCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC---------CCCCCcEEEEEecCCCC-----cCCccccCCCcc
Q 009263 135 QGIFKDTTDHLYNAATQERETTLNQLLIELDG---------FDTGKGVIFLAATNRRD-----LLDPALLRPGRF 195 (539)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~---------~~~~~~vivIaatn~~~-----~ld~al~r~gRf 195 (539)
...||+.|.. +.-+.+++||||-|..+ .|++++++ ||
T Consensus 79 ----------------------QsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 79 ----------------------QSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ----------------------HHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ----------------------HHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 2344444331 23356789999999766 47888887 77
No 212
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=2.1e-08 Score=102.23 Aligned_cols=133 Identities=24% Similarity=0.365 Sum_probs=94.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC-------------------------EEEEeCchhhH--------------
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------------------FYQMAGSEFVE-------------- 97 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~-------------------------~~~~~~~~~~~-------------- 97 (539)
+.|.++||+||+|+||+++|+++|+.+.+. ++.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 678899999999999999999999977431 11111110000
Q ss_pred --H------H-hhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHh
Q 009263 98 --V------L-VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 164 (539)
Q Consensus 98 --~------~-~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 164 (539)
. . ...+...++.+...+.. ....|++||++|.+. ....|.||+.|
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~----------------------~~AaNaLLKtL 156 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN----------------------VAAANALLKTL 156 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC----------------------HHHHHHHHHHh
Confidence 0 0 01123455665554422 234599999999975 34578899999
Q ss_pred cCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHH
Q 009263 165 DGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIH 216 (539)
Q Consensus 165 d~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~ 216 (539)
+ +++.++++|.+|+.++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 157 E--EPp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 157 E--EPPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred c--CCCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8 577788999999999999999998 75 68899999999888877653
No 213
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=5.4e-08 Score=98.57 Aligned_cols=129 Identities=19% Similarity=0.320 Sum_probs=92.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhHHHhhhhhHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 112 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~f~ 112 (539)
+.+.++||+||+|+||+++|+++|+.+-+. ++.+...+ . ..-+...+|++.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~--~~I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--N--KDIGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--C--CCCCHHHHHHHHH
Confidence 456789999999999999999999976321 11121100 0 0123445666655
Q ss_pred HHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 009263 113 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 188 (539)
Q Consensus 113 ~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~a 188 (539)
.+.. ....|++||++|.+.. ...|.||+.|+ +++.++++|.+|+.++.+.|.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~----------------------~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTE----------------------AAANALLKTLE--EPRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred HHhhccccCCceEEEEechhhhCH----------------------HHHHHHHHHhc--CCCCCeEEEEEECChHhCchH
Confidence 4432 2346999999999752 45688999888 467788888899999999999
Q ss_pred ccCCCccceeeecCCCCHHHHHHHHHHH
Q 009263 189 LLRPGRFDRKIRIRAPNAKGRTEILKIH 216 (539)
Q Consensus 189 l~r~gRf~~~i~v~~P~~~er~~il~~~ 216 (539)
+++ | +..+.|++|+.++..+.+...
T Consensus 154 I~S--R-C~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 154 IYS--R-CQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HHh--h-ceEEeCCCCCHHHHHHHHHHH
Confidence 998 7 457889999998887777654
No 214
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.85 E-value=2.4e-08 Score=109.50 Aligned_cols=100 Identities=23% Similarity=0.282 Sum_probs=63.9
Q ss_pred cEEEEEecCCC--CcCCccccCCCccc---eeeecCC--C-CHHHHHHHHHHHhccCCC---CCCCCH---HHHHh---h
Q 009263 172 GVIFLAATNRR--DLLDPALLRPGRFD---RKIRIRA--P-NAKGRTEILKIHASKVKM---SDSVDL---SSYAK---N 234 (539)
Q Consensus 172 ~vivIaatn~~--~~ld~al~r~gRf~---~~i~v~~--P-~~~er~~il~~~l~~~~~---~~~~~~---~~la~---~ 234 (539)
++.||+++|.. ..++|.|.. ||. ..++|.. + +.+.+..+++...+.... ...++- ..+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57888888874 457888888 775 4455542 2 344555555544433211 123332 22221 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 009263 235 LPG------WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 273 (539)
Q Consensus 235 t~g------~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~ 273 (539)
..| ...++|..++++|...|..++...++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 347899999999999999999999999999988754
No 215
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.81 E-value=8.5e-08 Score=103.04 Aligned_cols=212 Identities=20% Similarity=0.283 Sum_probs=121.3
Q ss_pred chhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 12 YFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
....|.+++.|.+.+||+-..+-.++++.++..... +....+-+||+||||||||++++.+|++++..+..-.
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 356799999999999999998877777777664221 1233456889999999999999999999987766532
Q ss_pred -Cchhh------HHHhhhh---------hHHHHHH-HHHHHh-----------CCCeEEEEeCcchhhhhhcCCcCCchh
Q 009263 92 -GSEFV------EVLVGVG---------SARIRDL-FKRAKV-----------NKPSVIFIDEIDALATRRQGIFKDTTD 143 (539)
Q Consensus 92 -~~~~~------~~~~g~~---------~~~~~~~-f~~a~~-----------~~p~Il~iDEiD~l~~~~~~~~~~~~~ 143 (539)
...+. ..+.+.. ......+ +..++. ..+.||+|||+-......
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~--------- 148 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD--------- 148 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh---------
Confidence 22210 0111100 0011111 111111 245699999997544221
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCCC-cEEEEEec-C------CCC--------cCCccccCCCccceeeecCCCCHH
Q 009263 144 HLYNAATQERETTLNQLLIELDGFDTGK-GVIFLAAT-N------RRD--------LLDPALLRPGRFDRKIRIRAPNAK 207 (539)
Q Consensus 144 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~-~vivIaat-n------~~~--------~ld~al~r~gRf~~~i~v~~P~~~ 207 (539)
.......+..++.. ... ++++|.|- + ... .+++.++...+ -.+|.|.+-...
T Consensus 149 ------~~~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~-i~~I~FNpIa~T 216 (519)
T PF03215_consen 149 ------TSRFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPG-ITRIKFNPIAPT 216 (519)
T ss_pred ------HHHHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCC-ceEEEecCCCHH
Confidence 12222333333321 222 66666661 1 110 24455544222 347888777766
Q ss_pred HHHHHHHHHhccC--------CCCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 009263 208 GRTEILKIHASKV--------KMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAV 255 (539)
Q Consensus 208 er~~il~~~l~~~--------~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~~A~ 255 (539)
-..+.|+..+... ......+ ++.++..+.| ||+.+++.--..+.
T Consensus 217 ~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 217 FMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 6555555554432 1111122 5677766555 99999998887776
No 216
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.1e-08 Score=101.47 Aligned_cols=76 Identities=32% Similarity=0.560 Sum_probs=60.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH-HHhhhhhH-HHHHHHHHHH----hCCCeEEEEeCcchhhhh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVGVGSA-RIRDLFKRAK----VNKPSVIFIDEIDALATR 133 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~f~~a~----~~~p~Il~iDEiD~l~~~ 133 (539)
.+|||.||+|+|||+||+.+|+-+++||...+|..+.. .|+|+... .+.+++..|. +.+..||||||+|.+..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46999999999999999999999999999999998764 47776544 3556665542 234569999999999865
Q ss_pred hc
Q 009263 134 RQ 135 (539)
Q Consensus 134 ~~ 135 (539)
..
T Consensus 307 ~~ 308 (564)
T KOG0745|consen 307 AE 308 (564)
T ss_pred Cc
Confidence 43
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=6.6e-08 Score=98.81 Aligned_cols=151 Identities=17% Similarity=0.257 Sum_probs=100.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhHHHhhhhhHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 112 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~f~ 112 (539)
+.+..+||+||+|+||+++|.++|..+-+. ++.+....- . ..-+...+|++.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHHH
Confidence 567789999999999999999999977321 112211100 0 0123345666555
Q ss_pred HHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 009263 113 RAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 188 (539)
Q Consensus 113 ~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~a 188 (539)
.+. .....|++||++|.+. ....|.||+.|+ +++.+.++|..|+.++.+.|.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~----------------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT----------------------DAAANALLKTLE--EPPENTWFFLACREPARLLAT 154 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC----------------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHH
Confidence 443 2344699999999975 345788999998 467788888899999999999
Q ss_pred ccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHH
Q 009263 189 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGAR 242 (539)
Q Consensus 189 l~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~d 242 (539)
+++ |.. .+.|++|+.++..+.+.... ..+. .+...+++.+.| ++..
T Consensus 155 IrS--RCq-~~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G-~~~~ 200 (334)
T PRK07993 155 LRS--RCR-LHYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAG-APGA 200 (334)
T ss_pred HHh--ccc-cccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCC-CHHH
Confidence 998 755 67999999887777664321 2221 123455566666 4433
No 218
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.78 E-value=4.6e-08 Score=104.71 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=116.2
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHh
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 100 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~ 100 (539)
.+.+++|.+...+.+.+.+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888777666666554332 223468999999999999999998765 57999999988754322
Q ss_pred hhh-----h-------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc--C
Q 009263 101 GVG-----S-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--G 166 (539)
Q Consensus 101 g~~-----~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld--~ 166 (539)
... . ......|.. ....+||||||+.|.... +..+..++..-. .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~~~~-------------------q~~l~~~l~~~~~~~ 264 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLPLNL-------------------QAKLLRFLQERVIER 264 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCCHHH-------------------HHHHHHHHhhCeEEe
Confidence 110 0 000111222 334699999999986442 222223332210 0
Q ss_pred CC----CCCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHHHH----HHHHHhccC----CCC-CCC
Q 009263 167 FD----TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS-DSV 226 (539)
Q Consensus 167 ~~----~~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er~~----il~~~l~~~----~~~-~~~ 226 (539)
.. .+.++.+|++|+..- .+.+.|.. |+. .+.+..|...+|.+ ++++++... ... ..+
T Consensus 265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~ 341 (445)
T TIGR02915 265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGF 341 (445)
T ss_pred CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 01 123578888887542 23333332 332 35566677777765 445554432 111 123
Q ss_pred C---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHH
Q 009263 227 D---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 268 (539)
Q Consensus 227 ~---~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~ 268 (539)
+ +..|....---+.++|++++++|...+ ....|+.+++.
T Consensus 342 ~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 342 TDDALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred CHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 3 344444332226778888888777544 33567777653
No 219
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=1.7e-07 Score=94.77 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=100.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC---------------------EEEEe--CchhhHH-HhhhhhHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---------------------FYQMA--GSEFVEV-LVGVGSARIRDLFK 112 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~---------------------~~~~~--~~~~~~~-~~g~~~~~~~~~f~ 112 (539)
+.|..+||+||+|+||+++|.++|+.+-+. ++.+. ...--.. ....+...+|++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 466789999999999999999999876321 11110 0000000 00112345666655
Q ss_pred HHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 009263 113 RAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 188 (539)
Q Consensus 113 ~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~a 188 (539)
.+... ...|++||++|.+. ....|.||+.|+. ++.++++|.+|+.++.+.|.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~----------------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN----------------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC----------------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchH
Confidence 54322 23599999999975 2456788888873 55677788888989999999
Q ss_pred ccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHH
Q 009263 189 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL 246 (539)
Q Consensus 189 l~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l 246 (539)
+++ |+ ..+.|++|+.++-.+.+... ... ..+...++..+.| ++.....+
T Consensus 160 IrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G-~p~~A~~~ 208 (319)
T PRK08769 160 IRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARG-HPGLAAQW 208 (319)
T ss_pred HHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCC-CHHHHHHH
Confidence 998 74 57889999988777766532 222 1123455666666 44433333
No 220
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.76 E-value=3.4e-07 Score=88.70 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=70.6
Q ss_pred CCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 009263 182 RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHE 260 (539)
Q Consensus 182 ~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~ 260 (539)
|.-++-.|++ |+ .+|...+++.++.++||+..+....+..+.+ ++.|......-|-+-..+++..|...|.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4457777777 64 4777888999999999999988765544333 445555555557777888999999999999999
Q ss_pred CCchhhHHHHHHHHhc
Q 009263 261 SILSSDMDDAVDRLTV 276 (539)
Q Consensus 261 ~I~~~d~~~a~~~~~~ 276 (539)
.+..+|+.++..-...
T Consensus 416 ~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLD 431 (454)
T ss_pred eeehhHHHHHHHHHhh
Confidence 9999999999876543
No 221
>PRK08181 transposase; Validated
Probab=98.76 E-value=6.6e-08 Score=95.57 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=51.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhh-hHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~-~~~~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
..+++|+||||||||+|+.++++++ +..+++++..++...+.... .......+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 4589999999999999999999755 77888999888877653221 11233344432 356699999998754
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.76 E-value=3.4e-08 Score=99.66 Aligned_cols=101 Identities=24% Similarity=0.346 Sum_probs=63.5
Q ss_pred CcCcCcccCcH-HHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhH
Q 009263 22 GVKFSDVAGID-EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 97 (539)
Q Consensus 22 ~~~~~dv~G~~-~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~ 97 (539)
+.+|+++...+ .....+.....++..... ....+|++|+||+|||||+|+.|+|+++ |.++.+++.++|..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~-----~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPP-----GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhc-----cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 46777765433 222223333333332211 1245799999999999999999999988 78888888888776
Q ss_pred HHhhhhh-HHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 98 VLVGVGS-ARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 98 ~~~g~~~-~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
.+..... ......+... ....+|+|||+..
T Consensus 198 ~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred HHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 5433211 1233344433 3456999999976
No 223
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.2e-07 Score=93.23 Aligned_cols=72 Identities=28% Similarity=0.474 Sum_probs=51.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhhhH-HHHHHHHHHHhCCCeEEEEeCcchh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSA-RIRDLFKRAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~~~-~~~~~f~~a~~~~p~Il~iDEiD~l 130 (539)
.+.+++|+||||||||+||-|+++++ |.++++++..++.......-.. .....+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 35689999999999999999999987 7899999999988764432221 122222221 234459999999774
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.71 E-value=5.1e-08 Score=99.14 Aligned_cols=69 Identities=22% Similarity=0.431 Sum_probs=50.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhh---hHHHHHHHHHHHhCCCeEEEEeCcchh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG---SARIRDLFKRAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~---~~~~~~~f~~a~~~~p~Il~iDEiD~l 130 (539)
.+++|+||||||||+|+.++|+++ +..+++++..++...+.... .......+... ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 689999999999999999999987 77889999988877543211 11111123332 34569999999775
No 225
>PRK06526 transposase; Provisional
Probab=98.71 E-value=4.9e-08 Score=95.93 Aligned_cols=72 Identities=22% Similarity=0.413 Sum_probs=50.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhh-hHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~-~~~~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
.+.+++|+||||||||+||.+++.++ |..+.+++..++........ .......+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 45689999999999999999998875 67777777777766543211 11222233322 346799999998764
No 226
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=5.7e-07 Score=92.28 Aligned_cols=204 Identities=19% Similarity=0.226 Sum_probs=131.5
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----CC-CEEEEeCchhhHH--
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GV-PFYQMAGSEFVEV-- 98 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----~~-~~~~~~~~~~~~~-- 98 (539)
..+.|.+..+..+++++..-.. .+.++.+++.|-||||||.+...+-... .. ..++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 5688888888888877664221 2456689999999999999999776554 22 3478888753321
Q ss_pred --------H----hhh-hhHHHHHHHHHH-HhC-CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH
Q 009263 99 --------L----VGV-GSARIRDLFKRA-KVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 163 (539)
Q Consensus 99 --------~----~g~-~~~~~~~~f~~a-~~~-~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 163 (539)
+ .+. ........|..- ... .+-|+++||+|.|..+.+.. +..+..+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~v-------------------Ly~lFew 282 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTV-------------------LYTLFEW 282 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccce-------------------eeeehhc
Confidence 1 000 112223344432 222 36699999999999665432 2222221
Q ss_pred hcCCCCCCcEEEEEecCCCCcCCccccC----CCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC--HHHHHhhCCC
Q 009263 164 LDGFDTGKGVIFLAATNRRDLLDPALLR----PGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD--LSSYAKNLPG 237 (539)
Q Consensus 164 ld~~~~~~~vivIaatn~~~~ld~al~r----~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~--~~~la~~t~g 237 (539)
.. -.+..+++|+..|..+.-|..|-| .+.-...+.|++++.++..+||...+.........+ +...|+...|
T Consensus 283 -p~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 283 -PK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred -cc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 11 244678889999987755544332 233445889999999999999999998776554443 6667788888
Q ss_pred CCHHHHH---HHHHHHHHHHHHhCC
Q 009263 238 WTGARLA---QLVQEAALVAVRKGH 259 (539)
Q Consensus 238 ~s~~dl~---~lv~~A~~~A~~~~~ 259 (539)
.|| |++ .+|+.|...+....+
T Consensus 361 ~SG-DlRkaLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 361 PSG-DLRKALDVCRRAIEIAEIEKR 384 (529)
T ss_pred Cch-hHHHHHHHHHHHHHHHHHHHh
Confidence 766 555 456777777765543
No 227
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.71 E-value=7.5e-08 Score=104.88 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=124.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC--CCEEEEeCchhhHHHhhhhh--HHH--------HHHHHHHHhCCCeEEEEeCc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGS--ARI--------RDLFKRAKVNKPSVIFIDEI 127 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~--~~~~~~~~~~~~~~~~g~~~--~~~--------~~~f~~a~~~~p~Il~iDEi 127 (539)
.|++|.|++|||||+++++++.-+. .||..+..+--....+|... ..+ ..++..| ...||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 5899999999999999999999875 48876654443344444321 000 1122222 2249999999
Q ss_pred chhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCC---CcCCccccCCC
Q 009263 128 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRR---DLLDPALLRPG 193 (539)
Q Consensus 128 D~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-----------~~~~~vivIaatn~~---~~ld~al~r~g 193 (539)
..+.. .++..|++.|+.- .-+.++++|++.|.. ..|.+++++
T Consensus 103 n~~~~----------------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD-- 158 (584)
T PRK13406 103 ERLEP----------------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD-- 158 (584)
T ss_pred ccCCH----------------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--
Confidence 88653 4566777776531 223568888874432 348899999
Q ss_pred ccceeeecCCCCHHHH-------HHHHH--HHhccCCCCCCCCHHHHHhh--CCCC-CHHHHHHHHHHHHHHHHHhCCCC
Q 009263 194 RFDRKIRIRAPNAKGR-------TEILK--IHASKVKMSDSVDLSSYAKN--LPGW-TGARLAQLVQEAALVAVRKGHES 261 (539)
Q Consensus 194 Rf~~~i~v~~P~~~er-------~~il~--~~l~~~~~~~~~~~~~la~~--t~g~-s~~dl~~lv~~A~~~A~~~~~~~ 261 (539)
||+.++.++.|+..+. .+|.. ..+.+..+... .+..++.. ..|. |.+.-..+++-|..+|..++++.
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~ 237 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTA 237 (584)
T ss_pred heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 9999999998876532 12332 22232222211 12332221 2354 77888888999999999999999
Q ss_pred CchhhHHHHHHHHhc
Q 009263 262 ILSSDMDDAVDRLTV 276 (539)
Q Consensus 262 I~~~d~~~a~~~~~~ 276 (539)
|+.+|+.+|+.-+..
T Consensus 238 V~~~dv~~Aa~lvL~ 252 (584)
T PRK13406 238 VEEEDLALAARLVLA 252 (584)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999876654
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=2.7e-07 Score=93.29 Aligned_cols=129 Identities=20% Similarity=0.293 Sum_probs=90.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCC-----------------------CEEEEeCchhhHHHhhhhhHHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------------------PFYQMAGSEFVEVLVGVGSARIRDLFKR 113 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~f~~ 113 (539)
+.|..+||+||.|+||+.+|+++|..+-. .++.+.... .. ..-+...+|.+...
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EG--KSITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CC--CcCCHHHHHHHHHH
Confidence 56778999999999999999999997622 122222110 00 00123445655444
Q ss_pred HHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccc
Q 009263 114 AKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPAL 189 (539)
Q Consensus 114 a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al 189 (539)
+.. ....|++||++|.+. ....|.||+.++ +++.++++|..|+.++.+-|.+
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~----------------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN----------------------ESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred HhhCcccCCceEEEecchhhhC----------------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHH
Confidence 322 234699999999975 245688999888 4667788888999999999999
Q ss_pred cCCCccceeeecCCCCHHHHHHHHHH
Q 009263 190 LRPGRFDRKIRIRAPNAKGRTEILKI 215 (539)
Q Consensus 190 ~r~gRf~~~i~v~~P~~~er~~il~~ 215 (539)
++ |. ..+.|++|+.++..+.+..
T Consensus 156 ~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 156 VS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred Hh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 98 74 5889999998887776653
No 229
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.68 E-value=3e-07 Score=98.74 Aligned_cols=206 Identities=21% Similarity=0.275 Sum_probs=113.5
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhh
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVG 101 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g 101 (539)
+.+++|.+.....+.+.+..+. .....++++|++||||+++|+++.... +.||+.++|..+......
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~ 211 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE 211 (457)
T ss_pred ccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH
Confidence 4456666655554444333222 223479999999999999999997754 579999999877543211
Q ss_pred h-----hhH-------HHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--
Q 009263 102 V-----GSA-------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-- 167 (539)
Q Consensus 102 ~-----~~~-------~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-- 167 (539)
. ... .....|.. ....+|||||||.+.... ...|+..++.-
T Consensus 212 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~~----------------------q~~L~~~l~~~~~ 266 (457)
T PRK11361 212 SELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLVL----------------------QAKLLRILQEREF 266 (457)
T ss_pred HHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHHH----------------------HHHHHHHHhcCcE
Confidence 1 000 00112222 234599999999986442 22333333211
Q ss_pred ---C----CCCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHHHH----HHHHHhccCCC----C-C
Q 009263 168 ---D----TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKVKM----S-D 224 (539)
Q Consensus 168 ---~----~~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er~~----il~~~l~~~~~----~-~ 224 (539)
. .+.++.+|++||..- .+.+.+.. |+. .+.+..|...+|.+ ++.+++..... . .
T Consensus 267 ~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~ 343 (457)
T PRK11361 267 ERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDII 343 (457)
T ss_pred EeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 1 123578888888532 12222322 222 45667777777654 44444443211 1 1
Q ss_pred CCC---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 225 SVD---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 225 ~~~---~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.++ +..+....---+.++|++++++|...+ ....|+.+|+...+
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 223 333443332226778888888776543 34568888776443
No 230
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.67 E-value=2.7e-07 Score=99.53 Aligned_cols=207 Identities=20% Similarity=0.295 Sum_probs=117.7
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHh
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 100 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~ 100 (539)
.+.+++|.......+.+.+..+. .....++|+|++|||||++|+++.... +.||+.++|..+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 46678888877766665554322 233469999999999999999998875 57999999987744321
Q ss_pred h-----hhhH------H-HHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-
Q 009263 101 G-----VGSA------R-IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF- 167 (539)
Q Consensus 101 g-----~~~~------~-~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~- 167 (539)
. .... . ....|.. .....|||||+|.+.... +. .|+..++.-
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l~~~~-------------------q~---~L~~~l~~~~ 260 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDMPLDV-------------------QT---RLLRVLADGQ 260 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccCCHHH-------------------HH---HHHHHHhcCc
Confidence 1 0000 0 0011222 234589999999976432 22 333333211
Q ss_pred ----C----CCCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHHHH----HHHHHhccC----CCC-
Q 009263 168 ----D----TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS- 223 (539)
Q Consensus 168 ----~----~~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er~~----il~~~l~~~----~~~- 223 (539)
. ...++.+|+||+..- .+.+.|.. |+. .+.+..|...+|.+ ++.+++... ...
T Consensus 261 ~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~ 337 (469)
T PRK10923 261 FYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEA 337 (469)
T ss_pred EEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCC
Confidence 0 123467888887532 23344444 442 34555566555544 555665432 111
Q ss_pred CCCC---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 224 DSVD---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 224 ~~~~---~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
..++ +..|....---+.++|+++++.+...+ ....|+.+|+...+
T Consensus 338 ~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 338 KLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred CCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 1122 333443332226777888887776554 34568888775443
No 231
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.66 E-value=1.6e-07 Score=90.75 Aligned_cols=184 Identities=23% Similarity=0.300 Sum_probs=91.6
Q ss_pred cCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC---CEEEEeC-chhhH----HH-
Q 009263 29 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---PFYQMAG-SEFVE----VL- 99 (539)
Q Consensus 29 ~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~~~~~~~-~~~~~----~~- 99 (539)
+|.++..+.|.+++.. .+...++|+||.|+|||+|++.+.+.+.. ..+++.. ..... ..
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5666666666654431 13457999999999999999999998832 1222211 11100 00
Q ss_pred ------------h-----------------hhhhHHHHHHHHHHHhCC-CeEEEEeCcchhh-hhhcCCcCCchhhhhhh
Q 009263 100 ------------V-----------------GVGSARIRDLFKRAKVNK-PSVIFIDEIDALA-TRRQGIFKDTTDHLYNA 148 (539)
Q Consensus 100 ------------~-----------------g~~~~~~~~~f~~a~~~~-p~Il~iDEiD~l~-~~~~~~~~~~~~~~~~~ 148 (539)
. ......+..++....... ..||+|||++.+. ....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~------------- 136 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE------------- 136 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT-------------
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc-------------
Confidence 0 011233455555554432 3799999999987 2110
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCcEEE-EEecCC--C-C--cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccC-C
Q 009263 149 ATQERETTLNQLLIELDGFDTGKGVIF-LAATNR--R-D--LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV-K 221 (539)
Q Consensus 149 ~~~~~~~~l~~ll~~ld~~~~~~~viv-Iaatn~--~-~--~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~-~ 221 (539)
. ...+..+...++......++.+ ++++.. . + .-...+.. |+.. +.+++.+.++..++++..+... .
T Consensus 137 -~---~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~ 209 (234)
T PF01637_consen 137 -D---KDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIK 209 (234)
T ss_dssp -T---HHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC--
T ss_pred -h---HHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhc
Confidence 1 1223333333333223344433 433331 1 1 11223333 6766 9999999999999999887665 1
Q ss_pred C-CCCCCHHHHHhhCCCCCHHHHHH
Q 009263 222 M-SDSVDLSSYAKNLPGWTGARLAQ 245 (539)
Q Consensus 222 ~-~~~~~~~~la~~t~g~s~~dl~~ 245 (539)
+ ..+.+++.+...+.| .|+-|..
T Consensus 210 ~~~~~~~~~~i~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 210 LPFSDEDIEEIYSLTGG-NPRYLQE 233 (234)
T ss_dssp ----HHHHHHHHHHHTT--HHHHHH
T ss_pred ccCCHHHHHHHHHHhCC-CHHHHhc
Confidence 1 133447777777766 5666543
No 232
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=2.8e-07 Score=80.97 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=48.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC--CCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l 130 (539)
+.++|+||.|+|||++++.++.... ..+++++..+.......... +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 77888888776553211111 223333322235679999999986
No 233
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.63 E-value=5.7e-08 Score=90.40 Aligned_cols=71 Identities=31% Similarity=0.537 Sum_probs=49.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhh-hHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~-~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
..+.|++|+||||||||+||.++++++ +.++.+++..++........ .......+.... .+.+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 345789999999999999999999876 88899999998887643321 112233444433 345999999965
No 234
>PRK09183 transposase/IS protein; Provisional
Probab=98.62 E-value=1.2e-07 Score=93.75 Aligned_cols=74 Identities=30% Similarity=0.471 Sum_probs=51.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhh-hhHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV-GSARIRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~-~~~~~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
..+.+++|+||||||||+|+.+++..+ |..+.+++..++...+... ....+...+... ...+++++|||++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 345679999999999999999997764 7788888887776543221 112233445443 2456799999998753
No 235
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.61 E-value=1.6e-07 Score=96.76 Aligned_cols=140 Identities=23% Similarity=0.320 Sum_probs=83.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCC-CEEEEeCchhhHHHhhh------hhHHHHHHHHHHHhCCCeEEEEeCcc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSVIFIDEID 128 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~-~~~~~~~~~~~~~~~g~------~~~~~~~~f~~a~~~~p~Il~iDEiD 128 (539)
..+|+|++||||+|+|||+|+-.+...+.. .-..+...+|....... ....+..+.+... ....+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 457999999999999999999999998754 22233333443321111 1112222332222 334499999997
Q ss_pred hhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCcCCc-cccCCCccceeeecCCCCH
Q 009263 129 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDP-ALLRPGRFDRKIRIRAPNA 206 (539)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~-~~~ld~-al~r~gRf~~~i~v~~P~~ 206 (539)
.- +-.....+..|+..+- ..++++|+|+|. |+.|-+ .+.| .+|-.
T Consensus 138 V~-------------------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r-~~Flp--------- 184 (362)
T PF03969_consen 138 VT-------------------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQR-ERFLP--------- 184 (362)
T ss_pred cc-------------------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccH-HHHHH---------
Confidence 62 1222345666666652 367899999996 444332 2332 23322
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHH
Q 009263 207 KGRTEILKIHASKVKMSDSVDLSSY 231 (539)
Q Consensus 207 ~er~~il~~~l~~~~~~~~~~~~~l 231 (539)
-.++|+.++.-..++.+.|+...
T Consensus 185 --~I~~l~~~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 185 --FIDLLKRRCDVVELDGGVDYRRR 207 (362)
T ss_pred --HHHHHHhceEEEEecCCCchhhh
Confidence 24677778877777777776554
No 236
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.2e-07 Score=102.42 Aligned_cols=129 Identities=33% Similarity=0.367 Sum_probs=91.5
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH----
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV---- 98 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~---- 98 (539)
..|+|++++...+.+.+...+.... +. ++...++|.||.|+|||-||+++|..+ .-.++.+++++|.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~--~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK--DP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC--CC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 4589999999999888876443211 00 366679999999999999999999987 457899999986652
Q ss_pred -----HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-----
Q 009263 99 -----LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD----- 168 (539)
Q Consensus 99 -----~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~----- 168 (539)
|+|. .....+.+..++...+||+|||||.-. ...++.|++.+|...
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh----------------------~~v~n~llq~lD~GrltDs~ 693 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH----------------------PDVLNILLQLLDRGRLTDSH 693 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC----------------------HHHHHHHHHHHhcCccccCC
Confidence 2222 223355566666667999999999843 235666666666431
Q ss_pred ----CCCcEEEEEecCCC
Q 009263 169 ----TGKGVIFLAATNRR 182 (539)
Q Consensus 169 ----~~~~vivIaatn~~ 182 (539)
.-.++|||.|+|.-
T Consensus 694 Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 694 GREVDFKNAIFIMTSNVG 711 (898)
T ss_pred CcEeeccceEEEEecccc
Confidence 22568999999853
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.60 E-value=4.9e-08 Score=87.03 Aligned_cols=81 Identities=28% Similarity=0.540 Sum_probs=54.7
Q ss_pred cCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC---CEEEEeCchhhHHHhhhhhH
Q 009263 29 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---PFYQMAGSEFVEVLVGVGSA 105 (539)
Q Consensus 29 ~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~~~~~~~~~~~~~~~g~~~~ 105 (539)
+|.....+++++-+..+... ...|+|+|++||||+++|+++....+. +|+.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46667777777766654432 347999999999999999999987753 56666655433
Q ss_pred HHHHHHHHHHhCCCeEEEEeCcchhhhh
Q 009263 106 RIRDLFKRAKVNKPSVIFIDEIDALATR 133 (539)
Q Consensus 106 ~~~~~f~~a~~~~p~Il~iDEiD~l~~~ 133 (539)
.++++.+ ....|||+|+|.+...
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE 84 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH
Confidence 3344444 5569999999998643
No 238
>PRK15115 response regulator GlrR; Provisional
Probab=98.59 E-value=4.2e-07 Score=97.24 Aligned_cols=184 Identities=23% Similarity=0.376 Sum_probs=103.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhh-----h-------HHHHHHHHHHHhCCCeEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-----S-------ARIRDLFKRAKVNKPSVIF 123 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~-----~-------~~~~~~f~~a~~~~p~Il~ 123 (539)
...++|+|++|||||++|+++.... +.||+.++|..+........ . ......|.. ....+||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA---AEGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEE---CCCCEEE
Confidence 3468999999999999999998765 57999999987654322110 0 000011221 2345899
Q ss_pred EeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc--CCC----CCCcEEEEEecCCCCcCCccccCCCccce
Q 009263 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFD----TGKGVIFLAATNRRDLLDPALLRPGRFDR 197 (539)
Q Consensus 124 iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld--~~~----~~~~vivIaatn~~~~ld~al~r~gRf~~ 197 (539)
|||||.|....+ ..+..++..-. ... ...++.+|+||+.. ++..+.+ |+|..
T Consensus 234 l~~i~~l~~~~q-------------------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~ 291 (444)
T PRK15115 234 LDEIGDMPAPLQ-------------------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFRE 291 (444)
T ss_pred EEccccCCHHHH-------------------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccH
Confidence 999999865422 22222222211 011 11257888888852 3322222 34421
Q ss_pred -------eeecCCCCHHHHHH----HHHHHhccC----CCC-CCCC---HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHh
Q 009263 198 -------KIRIRAPNAKGRTE----ILKIHASKV----KMS-DSVD---LSSYAKNL-PGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 198 -------~i~v~~P~~~er~~----il~~~l~~~----~~~-~~~~---~~~la~~t-~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
.+.+..|...+|.+ ++.+++... ... ..++ +..|.... +| +.++|+++++.|...+
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~Wpg-NvreL~~~i~~~~~~~--- 367 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG-NVRQLVNVIEQCVALT--- 367 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC-hHHHHHHHHHHHHHhC---
Confidence 45566677777754 445555432 111 1123 44455544 44 6777888887776543
Q ss_pred CCCCCchhhHHHHH
Q 009263 258 GHESILSSDMDDAV 271 (539)
Q Consensus 258 ~~~~I~~~d~~~a~ 271 (539)
....|+.+++...+
T Consensus 368 ~~~~i~~~~l~~~~ 381 (444)
T PRK15115 368 SSPVISDALVEQAL 381 (444)
T ss_pred CCCccChhhhhhhh
Confidence 34568877775443
No 239
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.58 E-value=3.3e-07 Score=98.59 Aligned_cols=211 Identities=21% Similarity=0.317 Sum_probs=113.5
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhh
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVG 101 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g 101 (539)
+..++|......++.+.+..+. .....+++.|++||||+++|+++.... +.||+.++|..+...+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 3457777766665555444322 233478999999999999999998764 579999999877443221
Q ss_pred hhh-HHHHHHHHH--------HHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc--CCC--
Q 009263 102 VGS-ARIRDLFKR--------AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFD-- 168 (539)
Q Consensus 102 ~~~-~~~~~~f~~--------a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld--~~~-- 168 (539)
... ...+..|.. ......+.|||||||.+.... +..+..++..-. ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~-------------------q~~ll~~l~~~~~~~~~~~ 263 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDA-------------------QTRLLRVLADGEFYRVGGR 263 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHH-------------------HHHHHHHHhcCcEEECCCC
Confidence 100 000000100 112235689999999976432 222333333211 001
Q ss_pred --CCCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHH----HHHHHHHHhccCCC----C-CCCC---
Q 009263 169 --TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKG----RTEILKIHASKVKM----S-DSVD--- 227 (539)
Q Consensus 169 --~~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~e----r~~il~~~l~~~~~----~-~~~~--- 227 (539)
...++.+|++|+..- .+.+.|.. |+. .+.+..|...+ ...++.+++..... . ..++
T Consensus 264 ~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 340 (463)
T TIGR01818 264 TPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEA 340 (463)
T ss_pred ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 123567888887432 22233333 333 23444454444 44455555543211 1 1233
Q ss_pred HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 228 LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 228 ~~~la~~t-~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
+..|.... +| +.++|+++++.|...+ ....|+.+|+...+
T Consensus 341 ~~~L~~~~wpg-NvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 341 LERLKQLRWPG-NVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 33333332 33 5678888888877654 34568888876554
No 240
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2.9e-07 Score=93.78 Aligned_cols=132 Identities=23% Similarity=0.333 Sum_probs=88.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCC-------------------------CEEEEeCchh---hHH-HhhhhhHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------------------------PFYQMAGSEF---VEV-LVGVGSARI 107 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~-------------------------~~~~~~~~~~---~~~-~~g~~~~~~ 107 (539)
+.|..+||+||+|+|||++|+.+|+.+.+ .|+.++...- ... ...-+...+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 67788999999999999999999997632 1233322100 000 000134556
Q ss_pred HHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 009263 108 RDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD 183 (539)
Q Consensus 108 ~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~ 183 (539)
|++.+.+.. ....|++||+++.+.. ...+.++..++... .++.+|.+|+.++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~----------------------~a~naLLk~LEep~--~~~~~Ilvth~~~ 154 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL----------------------QAANSLLKVLEEPP--PQVVFLLVSHAAD 154 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH----------------------HHHHHHHHHHHhCc--CCCEEEEEeCChH
Confidence 777666543 2345999999998753 23456666666442 3466777888888
Q ss_pred cCCccccCCCccceeeecCCCCHHHHHHHHHH
Q 009263 184 LLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 215 (539)
Q Consensus 184 ~ld~al~r~gRf~~~i~v~~P~~~er~~il~~ 215 (539)
.+.+.+.+ | +..+.|++|+.++..+.+..
T Consensus 155 ~ll~ti~S--R-c~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 155 KVLPTIKS--R-CRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hChHHHHH--H-hhhhcCCCCCHHHHHHHHHh
Confidence 99999887 5 46888999999887776643
No 241
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.56 E-value=1.9e-06 Score=89.98 Aligned_cols=213 Identities=15% Similarity=0.238 Sum_probs=114.8
Q ss_pred chhceecCCCCcCcCcccCcHHHHHHHHHHHHHhc--ChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 12 YFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLK--NPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~--~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
.+..|.+++.|-+.++|.-..+-+.+++..+..+. .+. -..+-+||+||+|+|||+.++.++.++|..++.
T Consensus 68 ~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~-------l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 68 EFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK-------LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred ccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC-------CCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 46788999999999999877666666665555211 111 123458899999999999999999999987765
Q ss_pred Ee-C------------chhhHHHhhhhhHHHHHHHHHH------------HhCCCeEEEEeCcchhhhhhcCCcCCchhh
Q 009263 90 MA-G------------SEFVEVLVGVGSARIRDLFKRA------------KVNKPSVIFIDEIDALATRRQGIFKDTTDH 144 (539)
Q Consensus 90 ~~-~------------~~~~~~~~g~~~~~~~~~f~~a------------~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~ 144 (539)
-+ + +.+........-.........+ ....+.+|+|||+-......
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---------- 210 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---------- 210 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----------
Confidence 43 1 1111111111111111122222 11245699999986654321
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCC------CccceeeecCCCCHHHHHHHHHHHhc
Q 009263 145 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRP------GRFDRKIRIRAPNAKGRTEILKIHAS 218 (539)
Q Consensus 145 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~------gRf~~~i~v~~P~~~er~~il~~~l~ 218 (539)
....+...|..+-.....+-|++|.-++.++..++..+.+ .|+. +|.|.+-...-.++.|...+.
T Consensus 211 --------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~ 281 (634)
T KOG1970|consen 211 --------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICR 281 (634)
T ss_pred --------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHH
Confidence 1223333444333222223233333333344433322211 1332 566766665555666665554
Q ss_pred cCCCC-------CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 009263 219 KVKMS-------DSVDLSSYAKNLPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 219 ~~~~~-------~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A 254 (539)
..... ....++.++... ++||+.+++...+.+
T Consensus 282 ~e~~~~s~~k~~~~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 282 IEANKKSGIKVPDTAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred HhcccccCCcCchhHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 32211 122245555554 449999998887776
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.56 E-value=6.2e-07 Score=88.89 Aligned_cols=69 Identities=30% Similarity=0.364 Sum_probs=47.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
...+++|+||||||||+|+.++|+++ +..+++++..++....... .......+... ...++|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 35689999999999999999999976 5678888877765543221 11122222222 3456999999944
No 243
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=4.5e-07 Score=79.63 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=45.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc--------CCCEEEEeCchhhHH--Hh-------h------hhhHHH-HHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA--------GVPFYQMAGSEFVEV--LV-------G------VGSARI-RDLFKRA 114 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~--------~~~~~~~~~~~~~~~--~~-------g------~~~~~~-~~~f~~a 114 (539)
.+.++++||||+|||++++.++... ..+++.+++....+. +. + .....+ ..+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999987 677888776544311 00 0 012222 2333334
Q ss_pred HhCCCeEEEEeCcchhh
Q 009263 115 KVNKPSVIFIDEIDALA 131 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~l~ 131 (539)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 44444599999999974
No 244
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.43 E-value=2.8e-06 Score=90.83 Aligned_cols=181 Identities=24% Similarity=0.346 Sum_probs=101.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhh-----hH-------HHHHHHHHHHhCCCeEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-----SA-------RIRDLFKRAKVNKPSVIF 123 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~-----~~-------~~~~~f~~a~~~~p~Il~ 123 (539)
...++++|.+||||+++|+++.... +.||+.++|..+........ .. .....|. ....++||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEE
Confidence 4569999999999999999997654 57999999987654322110 00 0001111 23456999
Q ss_pred EeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC---------CCCcEEEEEecCCCCcCCccccCCCc
Q 009263 124 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD---------TGKGVIFLAATNRRDLLDPALLRPGR 194 (539)
Q Consensus 124 iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~~~vivIaatn~~~~ld~al~r~gR 194 (539)
|||||.|....+ ..|+..++.-. .+.++.+|++|+.+-. ....+|+
T Consensus 239 ldei~~l~~~~q----------------------~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~~~~~~~ 293 (441)
T PRK10365 239 LDEIGDISPMMQ----------------------VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---AEVNAGR 293 (441)
T ss_pred EeccccCCHHHH----------------------HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCC
Confidence 999999865421 23334333210 1124667777765321 2223334
Q ss_pred cce-------eeecCCCCHHHHHH----HHHHHhccC----CCC-CCCC---HHHHHhhC-CCCCHHHHHHHHHHHHHHH
Q 009263 195 FDR-------KIRIRAPNAKGRTE----ILKIHASKV----KMS-DSVD---LSSYAKNL-PGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 195 f~~-------~i~v~~P~~~er~~----il~~~l~~~----~~~-~~~~---~~~la~~t-~g~s~~dl~~lv~~A~~~A 254 (539)
|.. .+.+..|...+|.+ ++.+++... ... ..++ +..|.... +| +.++|+++++.|...
T Consensus 294 ~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg-N~reL~~~~~~~~~~- 371 (441)
T PRK10365 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG-NIRELENAVERAVVL- 371 (441)
T ss_pred chHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC-HHHHHHHHHHHHHHh-
Confidence 432 45566677776644 555555432 111 1123 34444443 33 567777777776654
Q ss_pred HHhCCCCCchhhHHHHH
Q 009263 255 VRKGHESILSSDMDDAV 271 (539)
Q Consensus 255 ~~~~~~~I~~~d~~~a~ 271 (539)
.....|+.+++...+
T Consensus 372 --~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 372 --LTGEYISERELPLAI 386 (441)
T ss_pred --CCCCccchHhCchhh
Confidence 344568888776543
No 245
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.39 E-value=6.7e-07 Score=89.21 Aligned_cols=169 Identities=24% Similarity=0.280 Sum_probs=95.3
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhh----cC---CCCCceEEEECCCCCcHHHHHHHHHHhcCCCE-EEEeCchhh
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDK----MG---IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-YQMAGSEFV 96 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~----~g---~~~~~giLL~GppGtGKT~la~alA~~~~~~~-~~~~~~~~~ 96 (539)
|.+=.-+..+.+.|.++...+..+..-.. +. ..+++|++|||+-|.|||+|.-.+...+..+- ..+....|.
T Consensus 24 ~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM 103 (367)
T COG1485 24 FQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFM 103 (367)
T ss_pred CCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHH
Confidence 33323344555566665554332222111 22 34789999999999999999999999875432 233333333
Q ss_pred HH-------HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 009263 97 EV-------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 169 (539)
Q Consensus 97 ~~-------~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 169 (539)
.. ..|.. .-+..+-.. ......||+|||+.. .+-.....+..|+.+|=
T Consensus 104 ~~vH~~l~~l~g~~-dpl~~iA~~-~~~~~~vLCfDEF~V-------------------tDI~DAMiL~rL~~~Lf---- 158 (367)
T COG1485 104 ARVHQRLHTLQGQT-DPLPPIADE-LAAETRVLCFDEFEV-------------------TDIADAMILGRLLEALF---- 158 (367)
T ss_pred HHHHHHHHHHcCCC-CccHHHHHH-HHhcCCEEEeeeeee-------------------cChHHHHHHHHHHHHHH----
Confidence 22 11211 111111111 112334999999975 22223456677777763
Q ss_pred CCcEEEEEecCC-CCcCCc-cccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHH
Q 009263 170 GKGVIFLAATNR-RDLLDP-ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSS 230 (539)
Q Consensus 170 ~~~vivIaatn~-~~~ld~-al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~ 230 (539)
..+|++++|+|. |+.|-+ .|.| .||-. -.++++.++.-+.++...|+..
T Consensus 159 ~~GV~lvaTSN~~P~~LY~dGlqR-~~FLP-----------~I~li~~~~~v~~vD~~~DYR~ 209 (367)
T COG1485 159 ARGVVLVATSNTAPDNLYKDGLQR-ERFLP-----------AIDLIKSHFEVVNVDGPVDYRL 209 (367)
T ss_pred HCCcEEEEeCCCChHHhcccchhH-HhhHH-----------HHHHHHHheEEEEecCCccccc
Confidence 358999999995 444432 2222 34432 2467888888888777776543
No 246
>PF05729 NACHT: NACHT domain
Probab=98.37 E-value=5.2e-06 Score=75.68 Aligned_cols=140 Identities=21% Similarity=0.288 Sum_probs=73.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcC--------CC-EEEEeCchhhHH---------H---hhhhhHHHHH-HHHHHHhCC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAG--------VP-FYQMAGSEFVEV---------L---VGVGSARIRD-LFKRAKVNK 118 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~--------~~-~~~~~~~~~~~~---------~---~g~~~~~~~~-~f~~a~~~~ 118 (539)
-++|+|+||+|||++++.++..+. .+ ++.+++.++... . .......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999997661 12 223333332221 0 0001111111 112233456
Q ss_pred CeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--cCCccccCCCccc
Q 009263 119 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD--LLDPALLRPGRFD 196 (539)
Q Consensus 119 p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~--~ld~al~r~gRf~ 196 (539)
..+|+||.+|.+....... ........+..++.. ....++-++.++.... .+...+.. .
T Consensus 82 ~~llilDglDE~~~~~~~~-----------~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~ 142 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQ-----------ERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----A 142 (166)
T ss_pred ceEEEEechHhcccchhhh-----------HHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----C
Confidence 6799999999987532110 011112223333332 1123334443443222 22222332 1
Q ss_pred eeeecCCCCHHHHHHHHHHHhcc
Q 009263 197 RKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 197 ~~i~v~~P~~~er~~il~~~l~~ 219 (539)
..+.++..+.++..++++.+++.
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhhc
Confidence 46889999999999999988764
No 247
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.36 E-value=2.5e-05 Score=74.88 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=113.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCC---CEEEEeCch-----hhHHHhhhhh------------HHHHHHHHHHH-hCCC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGV---PFYQMAGSE-----FVEVLVGVGS------------ARIRDLFKRAK-VNKP 119 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~---~~~~~~~~~-----~~~~~~g~~~------------~~~~~~f~~a~-~~~p 119 (539)
-+.++|+.|||||++.|++...++. ..++++... +...++.... ..-+.+.+..+ ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 3678999999999999988776632 233443322 2222222111 11222333333 3456
Q ss_pred eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc-CCCCCCcEEEEEecCCCCcC-C---ccccCCCc
Q 009263 120 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-GFDTGKGVIFLAATNRRDLL-D---PALLRPGR 194 (539)
Q Consensus 120 ~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld-~~~~~~~vivIaatn~~~~l-d---~al~r~gR 194 (539)
.++++||.+.+.... ...+ .++.+++ +....-.++.|+-..-...+ - ..+.. |
T Consensus 133 v~l~vdEah~L~~~~-------------------le~L-rll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R 190 (269)
T COG3267 133 VVLMVDEAHDLNDSA-------------------LEAL-RLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--R 190 (269)
T ss_pred eEEeehhHhhhChhH-------------------HHHH-HHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--e
Confidence 899999999876432 1112 2333322 22333345555543211111 0 12233 7
Q ss_pred cceeeecCCCCHHHHHHHHHHHhccCCCC----CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHH
Q 009263 195 FDRKIRIRAPNAKGRTEILKIHASKVKMS----DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 268 (539)
Q Consensus 195 f~~~i~v~~P~~~er~~il~~~l~~~~~~----~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~ 268 (539)
++..|.+++.+.++-...+++.++.-... .+..+..+...+.| .|+.+.++|..|...|...+.+.|+...+.
T Consensus 191 ~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 191 IDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred EEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 77778999999998999999998765433 23336777778888 799999999999999999998888776543
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.36 E-value=1.9e-06 Score=78.22 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=48.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHh----------------------hh--hhHHHHHHHHHH
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV----------------------GV--GSARIRDLFKRA 114 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~----------------------g~--~~~~~~~~f~~a 114 (539)
++|+||||+|||+++..++..+ +.++++++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 56777776654332110 00 001112234455
Q ss_pred HhCCCeEEEEeCcchhhhh
Q 009263 115 KVNKPSVIFIDEIDALATR 133 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~l~~~ 133 (539)
....|.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678889999999988654
No 249
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.36 E-value=3.9e-06 Score=91.89 Aligned_cols=222 Identities=20% Similarity=0.225 Sum_probs=123.2
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhh--cCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhh
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDK--MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGV 102 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~--~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~ 102 (539)
.-.|.|.+.+|+.+.= ..+........ ..++..-++||.|.||||||.|.+.+++-+-..++.. +..-.. .|.
T Consensus 285 aPsIyG~e~VKkAilL--qLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyts-gkgss~--~GL 359 (682)
T COG1241 285 APSIYGHEDVKKAILL--QLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTS-GKGSSA--AGL 359 (682)
T ss_pred cccccCcHHHHHHHHH--HhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEc-cccccc--cCc
Confidence 4567788888777642 22222221111 1133445799999999999999999999876554432 111000 111
Q ss_pred hhHHHHHHH-----HHH---HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-------
Q 009263 103 GSARIRDLF-----KRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF------- 167 (539)
Q Consensus 103 ~~~~~~~~f-----~~a---~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~------- 167 (539)
++..+++-+ -.+ ....+.|.+|||+|.+.... -+.+...|+.-
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d----------------------r~aihEaMEQQtIsIaKA 417 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED----------------------RVAIHEAMEQQTISIAKA 417 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH----------------------HHHHHHHHHhcEeeeccc
Confidence 111111111 011 12345699999999864322 12333333321
Q ss_pred ----CCCCcEEEEEecCCCC-------------cCCccccCCCccceeeec-CCCCHHHHHHHHHHHhccCC--------
Q 009263 168 ----DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHASKVK-------- 221 (539)
Q Consensus 168 ----~~~~~vivIaatn~~~-------------~ld~al~r~gRf~~~i~v-~~P~~~er~~il~~~l~~~~-------- 221 (539)
.-+...-|+||+|+.. .++++|++ |||..+-+ ..|+.+.=..+.++.+....
T Consensus 418 GI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~ 495 (682)
T COG1241 418 GITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETI 495 (682)
T ss_pred ceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccc
Confidence 1123456788888654 37788999 99986655 34655433333222221110
Q ss_pred --------------------------CCCCCC---HHHHH---------------hhCCCCCHHHHHHHHHHHHHHHHHh
Q 009263 222 --------------------------MSDSVD---LSSYA---------------KNLPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 222 --------------------------~~~~~~---~~~la---------------~~t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
..+.+. .+.+. ..+...|.++|+.+++-|...|..+
T Consensus 496 ~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~r 575 (682)
T COG1241 496 SLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMR 575 (682)
T ss_pred ccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhh
Confidence 111110 01110 1112357889999999998888888
Q ss_pred CCCCCchhhHHHHHHHHh
Q 009263 258 GHESILSSDMDDAVDRLT 275 (539)
Q Consensus 258 ~~~~I~~~d~~~a~~~~~ 275 (539)
-++.++.+|+.+|++-+.
T Consensus 576 LS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 576 LSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 888999999999887664
No 250
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.35 E-value=3e-06 Score=89.80 Aligned_cols=223 Identities=17% Similarity=0.201 Sum_probs=126.2
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhh--hhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhh
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELF--DKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 101 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~--~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g 101 (539)
-|-.|.|.+.+|.-+.-.+ +....+. .+..++..-+|+|+|.||||||.+.++.++-+-..++. ++..-.. .|
T Consensus 343 l~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaSSa--AG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKASSA--AG 417 (764)
T ss_pred hCccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCccccc--cc
Confidence 3677899999888764222 2222221 23335556679999999999999999999877655443 2211100 11
Q ss_pred hhhHHHHH--HHH---HH---HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC------
Q 009263 102 VGSARIRD--LFK---RA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF------ 167 (539)
Q Consensus 102 ~~~~~~~~--~f~---~a---~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~------ 167 (539)
.+...+++ .++ +| ......|-.|||+|.+..+.+- .+++.|+.-
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqv----------------------AihEAMEQQtISIaK 475 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQV----------------------AIHEAMEQQTISIAK 475 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHH----------------------HHHHHHHhheehhee
Confidence 11111100 000 11 1123458999999998654321 233333311
Q ss_pred -----CCCCcEEEEEecCCCC-------------cCCccccCCCccceee-ecCCCCHHHHHHHHHHHhccCCCC-----
Q 009263 168 -----DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKI-RIRAPNAKGRTEILKIHASKVKMS----- 223 (539)
Q Consensus 168 -----~~~~~vivIaatn~~~-------------~ld~al~r~gRf~~~i-~v~~P~~~er~~il~~~l~~~~~~----- 223 (539)
.-+.+--||||+|+.. .+++++++ |||..+ -+..|++..-..|-++.+.....-
T Consensus 476 AGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~ 553 (764)
T KOG0480|consen 476 AGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATE 553 (764)
T ss_pred cceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhcccccccc
Confidence 1123345778888543 36788999 999744 557777765555554444321110
Q ss_pred ---------------------CCCC----------HHHH--------HhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCch
Q 009263 224 ---------------------DSVD----------LSSY--------AKNLPGWTGARLAQLVQEAALVAVRKGHESILS 264 (539)
Q Consensus 224 ---------------------~~~~----------~~~l--------a~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~ 264 (539)
+-+. +..+ .+.+.+.|.++|+.+++-+-.+|.-.-.+.+|.
T Consensus 554 ~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~ 633 (764)
T KOG0480|consen 554 RVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTK 633 (764)
T ss_pred ccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccH
Confidence 0000 0000 111225678888888888888887777788888
Q ss_pred hhHHHHHHHHh
Q 009263 265 SDMDDAVDRLT 275 (539)
Q Consensus 265 ~d~~~a~~~~~ 275 (539)
+|+.+|++-+.
T Consensus 634 ~~v~ea~eLlk 644 (764)
T KOG0480|consen 634 EDVEEAVELLK 644 (764)
T ss_pred HHHHHHHHHHH
Confidence 88888876553
No 251
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.33 E-value=1.3e-07 Score=96.86 Aligned_cols=220 Identities=19% Similarity=0.231 Sum_probs=112.5
Q ss_pred CcccCcHHHHHHHHH-HHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH-----H
Q 009263 26 SDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-----L 99 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~-~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~-----~ 99 (539)
-+|.|.+.+|..+.= ++....... -.....+..-++||+|.||||||.|.+.+++-.... +++++...... .
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~-~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKND-PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASV 101 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCC-CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEE
T ss_pred CcCcCcHHHHHHHHHHHHhcccccc-ccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCcccee
Confidence 357898888776531 111111000 000012344579999999999999999887655433 33333221100 0
Q ss_pred ---hhhhhHHH-HHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--------
Q 009263 100 ---VGVGSARI-RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------- 167 (539)
Q Consensus 100 ---~g~~~~~~-~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-------- 167 (539)
...+.-.+ ...+-.| ...|++|||+|.+... ....|++.|+.-
T Consensus 102 ~~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~~----------------------~~~~l~eaMEqq~isi~kag 156 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKED----------------------DRDALHEAMEQQTISIAKAG 156 (331)
T ss_dssp CCCGGTSSECEEE-HHHHC---TTSEEEECTTTT--CH----------------------HHHHHHHHHHCSCEEECTSS
T ss_pred ccccccceeEEeCCchhcc---cCceeeecccccccch----------------------HHHHHHHHHHcCeeccchhh
Confidence 00000000 0122222 3459999999987532 123455555431
Q ss_pred ---CCCCcEEEEEecCCCC-------------cCCccccCCCccceeeec-CCCCHHHHHHHHHHHhccCCCCC------
Q 009263 168 ---DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHASKVKMSD------ 224 (539)
Q Consensus 168 ---~~~~~vivIaatn~~~-------------~ld~al~r~gRf~~~i~v-~~P~~~er~~il~~~l~~~~~~~------ 224 (539)
.-+.+.-|+|++|+.. .+++.|++ |||.++.+ ..|+.+.-..+.++.+.......
T Consensus 157 i~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~ 234 (331)
T PF00493_consen 157 IVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKK 234 (331)
T ss_dssp SEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S------
T ss_pred hcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecccccccccccc
Confidence 1134577899998655 37789999 99988765 56665555555554443321110
Q ss_pred ------CCC------HHHHHh------------------------------hCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 009263 225 ------SVD------LSSYAK------------------------------NLPGWTGARLAQLVQEAALVAVRKGHESI 262 (539)
Q Consensus 225 ------~~~------~~~la~------------------------------~t~g~s~~dl~~lv~~A~~~A~~~~~~~I 262 (539)
.++ +-.+++ .....|.+.|+.+++-|...|..+.++.|
T Consensus 235 ~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V 314 (331)
T PF00493_consen 235 IKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEV 314 (331)
T ss_dssp --SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSEC
T ss_pred ccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCce
Confidence 111 111111 11234677889999999999998899999
Q ss_pred chhhHHHHHHHH
Q 009263 263 LSSDMDDAVDRL 274 (539)
Q Consensus 263 ~~~d~~~a~~~~ 274 (539)
+.+|+..|+.-+
T Consensus 315 ~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 315 TEEDVEEAIRLF 326 (331)
T ss_dssp SHHHHHHHHHHH
T ss_pred eHHHHHHHHHHH
Confidence 999999998754
No 252
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.31 E-value=4.2e-06 Score=79.97 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=52.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-Hhhh----------------------hhHHHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-LVGV----------------------GSARIR 108 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-~~g~----------------------~~~~~~ 108 (539)
|+....-++|+||||+|||+++..++.+. +.++++++..++... +... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 55666679999999999999999998644 667888887652111 1110 011133
Q ss_pred HHHHHHHhCCCeEEEEeCcchhhh
Q 009263 109 DLFKRAKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 109 ~~f~~a~~~~p~Il~iDEiD~l~~ 132 (539)
.+...+....+++|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 333334455789999999998864
No 253
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.30 E-value=5.6e-06 Score=82.31 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=113.9
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 97 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~ 97 (539)
....|+.+++.....+.+.+-...+. . ....+||.|.+||||-.+|++.-... ..||+.++|..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~A---m-------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLA---M-------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhh---c-------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 44557777777665444433222111 1 12358999999999999999986544 78999999998876
Q ss_pred HH-----hhhh--hHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc-C-C-
Q 009263 98 VL-----VGVG--SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-G-F- 167 (539)
Q Consensus 98 ~~-----~g~~--~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld-~-~- 167 (539)
.. .|.. .+....+|+.|... -||+|||..+... .+. .||.-+. | |
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~-------------------lQa---KLLRFL~DGtFR 323 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPR-------------------LQA---KLLRFLNDGTFR 323 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHH-------------------HHH---HHHHHhcCCcee
Confidence 52 2221 23345677776433 7999999876543 222 3333332 1 1
Q ss_pred ------CCCCcEEEEEecCCCC--cCCccccCCCccce--eeecCCCCHHHHHH----HHHHHh----ccCCCC-CCCCH
Q 009263 168 ------DTGKGVIFLAATNRRD--LLDPALLRPGRFDR--KIRIRAPNAKGRTE----ILKIHA----SKVKMS-DSVDL 228 (539)
Q Consensus 168 ------~~~~~vivIaatn~~~--~ld~al~r~gRf~~--~i~v~~P~~~er~~----il~~~l----~~~~~~-~~~~~ 228 (539)
+-.-+|.||+||..+- .....-.|..-|.+ ++.+..|...+|.. +.+.++ .+.... +..+.
T Consensus 324 RVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~ 403 (511)
T COG3283 324 RVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAA 403 (511)
T ss_pred ecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCH
Confidence 1123589999997532 12222222111222 56667777766644 333333 333332 23333
Q ss_pred HHHHhhCCCC---CHHHHHHHHHHHHHHHHHhCCCCCchhhHH
Q 009263 229 SSYAKNLPGW---TGARLAQLVQEAALVAVRKGHESILSSDMD 268 (539)
Q Consensus 229 ~~la~~t~g~---s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~ 268 (539)
+.+...+..- +.+++.|.+-+|.... ....++.+++.
T Consensus 404 ~~~~~L~~y~WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 404 DLLTVLTRYAWPGNVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 3232222222 5666666666665444 23445555554
No 254
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.28 E-value=1.9e-06 Score=85.70 Aligned_cols=138 Identities=25% Similarity=0.347 Sum_probs=74.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCC---EEEEeCchhhHHHhhhhhHHHHHHHHHH-----------HhCCCeEEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEFVEVLVGVGSARIRDLFKRA-----------KVNKPSVIFI 124 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~f~~a-----------~~~~p~Il~i 124 (539)
.+.+||+||+|||||.+++.+-..+... ...++++.... ...++.+++.. .....+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 4589999999999999999988766432 22344433211 12222222211 1123359999
Q ss_pred eCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-CC-------CCcEEEEEecCCCC---cCCccccCCC
Q 009263 125 DEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-DT-------GKGVIFLAATNRRD---LLDPALLRPG 193 (539)
Q Consensus 125 DEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-~~-------~~~vivIaatn~~~---~ld~al~r~g 193 (539)
||+..-....- ........+.+++..- ++ .. =.++.+|+|++.+. .+++.++|
T Consensus 107 DDlN~p~~d~y-------------gtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r-- 170 (272)
T PF12775_consen 107 DDLNMPQPDKY-------------GTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR-- 170 (272)
T ss_dssp ETTT-S---TT-------------S--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--
T ss_pred cccCCCCCCCC-------------CCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--
Confidence 99986443321 1111223344443321 22 11 13577888888543 36667776
Q ss_pred ccceeeecCCCCHHHHHHHHHHHhcc
Q 009263 194 RFDRKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 194 Rf~~~i~v~~P~~~er~~il~~~l~~ 219 (539)
.| .++.++.|+.+....|+..++..
T Consensus 171 ~f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 171 HF-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp TE-EEEE----TCCHHHHHHHHHHHH
T ss_pred he-EEEEecCCChHHHHHHHHHHHhh
Confidence 44 48889999999999988877653
No 255
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.25 E-value=1.2e-05 Score=77.90 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=73.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 138 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~ 138 (539)
..+..++||+|||||.+++.+|+.+|.+++.++|++-.+ ...+.++|.-+... .+-+++||++.+....-+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~vLS-- 102 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEVLS-- 102 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHHHH--
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHHHH--
Confidence 347789999999999999999999999999999987544 34566677655544 458999999997644211
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCC----CcCCccccCCCccceeeecCC
Q 009263 139 KDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRR----DLLDPALLRPGRFDRKIRIRA 203 (539)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-----------~~~~~vivIaatn~~----~~ld~al~r~gRf~~~i~v~~ 203 (539)
-..+.+..+...+..- .-+.+.-++.|.|.. ..+|+.|+. +-|.+.+..
T Consensus 103 -------------~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~ 166 (231)
T PF12774_consen 103 -------------VISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMV 166 (231)
T ss_dssp -------------HHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S
T ss_pred -------------HHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeC
Confidence 1111222222222210 111233444566632 367887775 456788999
Q ss_pred CCHHHHHHH
Q 009263 204 PNAKGRTEI 212 (539)
Q Consensus 204 P~~~er~~i 212 (539)
||.....++
T Consensus 167 PD~~~I~ei 175 (231)
T PF12774_consen 167 PDLSLIAEI 175 (231)
T ss_dssp --HHHHHHH
T ss_pred CCHHHHHHH
Confidence 997654443
No 256
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=8.1e-06 Score=81.12 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=79.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC----------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV---- 116 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~---- 116 (539)
+.+..+||+||+|+||+.+|.++|..+-+. ++.+.... ... .-+...+|.+.+.+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~--~I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGR--LHSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCC--cCcHHHHHHHHHHHhhCccC
Confidence 456789999999999999999999977431 11111100 000 0123445555554432
Q ss_pred CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccc
Q 009263 117 NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFD 196 (539)
Q Consensus 117 ~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~ 196 (539)
....|++||++|.+.. ...|.||+.++ +++.++++|..|+.++.+.|.+++ |.
T Consensus 94 ~~~kv~ii~~ad~mt~----------------------~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rc- 146 (290)
T PRK05917 94 SPYKIYIIHEADRMTL----------------------DAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RS- 146 (290)
T ss_pred CCceEEEEechhhcCH----------------------HHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cc-
Confidence 2336999999999753 34678888887 466778888888889999999998 64
Q ss_pred eeeecCCC
Q 009263 197 RKIRIRAP 204 (539)
Q Consensus 197 ~~i~v~~P 204 (539)
..+.|+++
T Consensus 147 q~~~~~~~ 154 (290)
T PRK05917 147 LSIHIPME 154 (290)
T ss_pred eEEEccch
Confidence 45667654
No 257
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.22 E-value=2.9e-06 Score=90.57 Aligned_cols=183 Identities=25% Similarity=0.371 Sum_probs=104.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc--CCCEEEEeCchhhHHHh-----hh--------hhHHHHHHHHHHHhCCCeEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA--GVPFYQMAGSEFVEVLV-----GV--------GSARIRDLFKRAKVNKPSVIFID 125 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~--~~~~~~~~~~~~~~~~~-----g~--------~~~~~~~~f~~a~~~~p~Il~iD 125 (539)
.+|+.|.|||||-.|+++|-... ..||+.++|.-+.+... |. ..+..+..+..|. -..||+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccHHH
Confidence 68999999999999999996654 67999999987665422 21 1111222333322 2389999
Q ss_pred CcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH-----hcCCCCCCcEEEEEecCCCCcCCccccCCCccce---
Q 009263 126 EIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE-----LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDR--- 197 (539)
Q Consensus 126 EiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~--- 197 (539)
||..+.-.- +..+...|++ +.+-..+-.|-||++|+++-. .|.+.|||.+
T Consensus 415 eIgd~p~~~-------------------Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLy 472 (606)
T COG3284 415 EIGDMPLAL-------------------QSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLY 472 (606)
T ss_pred HhhhchHHH-------------------HHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHH
Confidence 998765321 2223333333 222222335888999986432 4555667665
Q ss_pred ----eeecCCCCHHHHHH---HHHHHhccCCC-CCCCCHHH----HHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchh
Q 009263 198 ----KIRIRAPNAKGRTE---ILKIHASKVKM-SDSVDLSS----YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSS 265 (539)
Q Consensus 198 ----~i~v~~P~~~er~~---il~~~l~~~~~-~~~~~~~~----la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~ 265 (539)
.+.+.+|...+|.+ ++.+++..... ...++-+. ++...+| +.++|.++++.+...+ ....|...
T Consensus 473 yrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~ 548 (606)
T COG3284 473 YRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVS 548 (606)
T ss_pred HHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---CCCeeEcc
Confidence 33455676666544 44444443322 12233222 2334555 5667777776665444 44456666
Q ss_pred hHHHHHH
Q 009263 266 DMDDAVD 272 (539)
Q Consensus 266 d~~~a~~ 272 (539)
|+...+-
T Consensus 549 dlp~~l~ 555 (606)
T COG3284 549 DLPPELL 555 (606)
T ss_pred cCCHHHH
Confidence 6555543
No 258
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.21 E-value=1.8e-05 Score=79.37 Aligned_cols=159 Identities=19% Similarity=0.243 Sum_probs=85.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHh--cCCCE---EEEeCch------hhHHH---hhh---------hhHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGE--AGVPF---YQMAGSE------FVEVL---VGV---------GSARIRDLFKRA 114 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~--~~~~~---~~~~~~~------~~~~~---~g~---------~~~~~~~~f~~a 114 (539)
..+-+.|+|++|+|||+||+.+++. ....| +.++.+. +.... .+. ........+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4556899999999999999999987 33322 2222211 11111 111 112233444445
Q ss_pred HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCc
Q 009263 115 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGR 194 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gR 194 (539)
....+++|+||+++... .+..+...+... ..+..||.||...... .....
T Consensus 98 L~~~~~LlVlDdv~~~~------------------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~-~~~~~--- 147 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE------------------------DLEELREPLPSF--SSGSKILVTTRDRSVA-GSLGG--- 147 (287)
T ss_dssp HCCTSEEEEEEEE-SHH------------------------HH-------HCH--HSS-EEEEEESCGGGG-TTHHS---
T ss_pred hccccceeeeeeecccc------------------------cccccccccccc--cccccccccccccccc-ccccc---
Confidence 55669999999987632 122222222111 1234555577653321 11111
Q ss_pred cceeeecCCCCHHHHHHHHHHHhccCCC----CCCCCHHHHHhhCCCCCHHHHHHHH
Q 009263 195 FDRKIRIRAPNAKGRTEILKIHASKVKM----SDSVDLSSYAKNLPGWTGARLAQLV 247 (539)
Q Consensus 195 f~~~i~v~~P~~~er~~il~~~l~~~~~----~~~~~~~~la~~t~g~s~~dl~~lv 247 (539)
-...+.++..+.++-.++|......... ........++..+.| .|-.|..+.
T Consensus 148 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 148 TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 1568899999999999999988765431 112225778888877 577777664
No 259
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.20 E-value=1.6e-05 Score=85.01 Aligned_cols=127 Identities=24% Similarity=0.359 Sum_probs=70.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhH-----HHHHHHHHH---HhCCCeEEEEeCcc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSA-----RIRDLFKRA---KVNKPSVIFIDEID 128 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~f~~a---~~~~p~Il~iDEiD 128 (539)
+..-+|||+|.||||||.+.+.+++-+..-.+. ++..-.. +|.+.- ..+++.-+. -.....|-+|||+|
T Consensus 460 R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSa--vGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFD 536 (804)
T KOG0478|consen 460 RGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSA--VGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFD 536 (804)
T ss_pred cccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccch--hcceeeEEecCccceeeeecCcEEEcCCceEEchhhh
Confidence 344579999999999999999999977544332 2211000 111000 011111111 11234588999999
Q ss_pred hhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH------hcCC--CCCCcEEEEEecCCCC-------------cCCc
Q 009263 129 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE------LDGF--DTGKGVIFLAATNRRD-------------LLDP 187 (539)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~------ld~~--~~~~~vivIaatn~~~-------------~ld~ 187 (539)
.+.....+ ++.+.++. .-|+ .-+...-|+|+.|... .|+|
T Consensus 537 KM~dStrS-------------------vLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lpp 597 (804)
T KOG0478|consen 537 KMSDSTRS-------------------VLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPP 597 (804)
T ss_pred hhhHHHHH-------------------HHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCCh
Confidence 98543322 12221111 0111 1134567888998433 3789
Q ss_pred cccCCCccceee-ecCCCCHH
Q 009263 188 ALLRPGRFDRKI-RIRAPNAK 207 (539)
Q Consensus 188 al~r~gRf~~~i-~v~~P~~~ 207 (539)
.|++ |||.++ -+..||..
T Consensus 598 tLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 598 TLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred hhhh--hhcEEEEEecCcchh
Confidence 9999 999865 44666665
No 260
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.20 E-value=2.1e-05 Score=79.50 Aligned_cols=160 Identities=20% Similarity=0.310 Sum_probs=91.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEE---EEeCchhhHHH--------hhhhh-----------HHHHHHHHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY---QMAGSEFVEVL--------VGVGS-----------ARIRDLFKR 113 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~---~~~~~~~~~~~--------~g~~~-----------~~~~~~f~~ 113 (539)
-.+|+|++|||.-|||||+|.-.+...+.. .. .+...+|.... ...+. ..+. ....
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~-~vA~ 188 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLP-VVAD 188 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccH-HHHH
Confidence 346999999999999999999999865532 11 11122222110 00000 0000 1111
Q ss_pred HHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCcCCc-cccC
Q 009263 114 AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDP-ALLR 191 (539)
Q Consensus 114 a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~-~~~ld~-al~r 191 (539)
-.....++|++||+..- +-...-.++.|...|- ..+++++||+|+ |++|-. .+.|
T Consensus 189 eIa~ea~lLCFDEfQVT-------------------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR 245 (467)
T KOG2383|consen 189 EIAEEAILLCFDEFQVT-------------------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQR 245 (467)
T ss_pred HHhhhceeeeechhhhh-------------------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhh
Confidence 12233569999999762 1222345666666652 348999999996 444433 3333
Q ss_pred CCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCC-C--C-CHHHHHHHHHHHHH
Q 009263 192 PGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP-G--W-TGARLAQLVQEAAL 252 (539)
Q Consensus 192 ~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~-g--~-s~~dl~~lv~~A~~ 252 (539)
...+| -..+|+.++.-..+...+|+...+.... + | +..|...++++-..
T Consensus 246 ------~~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 246 ------ENFIP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred ------hhhhh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 22232 3478888998888889999883333221 1 2 33488888777654
No 261
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3e-05 Score=75.49 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=79.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc--------------hhhHHHh---hhhhHHHHHHHHHHHh---
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS--------------EFVEVLV---GVGSARIRDLFKRAKV--- 116 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~--------------~~~~~~~---g~~~~~~~~~f~~a~~--- 116 (539)
.+|..+||+||+|+||..+|.++|..+-+.--.-.|. ++.-.+. .-+...++++......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 5678899999999999999999998762210000011 0000000 1123344554443321
Q ss_pred --CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCc
Q 009263 117 --NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGR 194 (539)
Q Consensus 117 --~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gR 194 (539)
....|++|+++|.+. ....|.||..++ +++.++++|..|+.++.+.|.+++ |
T Consensus 85 e~~~~KV~II~~ae~m~----------------------~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--R 138 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN----------------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--R 138 (261)
T ss_pred hcCCCEEEEeccHhhhC----------------------HHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--h
Confidence 235699999999975 345788999888 477788888899999999999998 7
Q ss_pred cceeeecCCC
Q 009263 195 FDRKIRIRAP 204 (539)
Q Consensus 195 f~~~i~v~~P 204 (539)
.. .+.++.+
T Consensus 139 Cq-~~~~~~~ 147 (261)
T PRK05818 139 CV-QYVVLSK 147 (261)
T ss_pred ee-eeecCCh
Confidence 43 4566666
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.13 E-value=2.3e-05 Score=93.49 Aligned_cols=158 Identities=20% Similarity=0.309 Sum_probs=90.5
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCE---EEEeCc----
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF---YQMAGS---- 93 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~---~~~~~~---- 93 (539)
+...+++++|.+...+++...+.. .....+-+-|+||+|+||||||+++++.....| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 456788999999988888766531 123445688999999999999999988774433 111110
Q ss_pred ---hhh-------HHHhhhhhHHHH-------------HHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhh
Q 009263 94 ---EFV-------EVLVGVGSARIR-------------DLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 150 (539)
Q Consensus 94 ---~~~-------~~~~g~~~~~~~-------------~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~ 150 (539)
.+. ..........+. ..++......+.+|+||+++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------------- 308 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------------- 308 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------------
Confidence 000 000000000000 1122223345678999998652
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc
Q 009263 151 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 151 ~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~ 219 (539)
..+..+....+.+. .+-.||.||.+... .+....+.++.++.|+.++..++|..++.+
T Consensus 309 ----~~l~~L~~~~~~~~--~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 309 ----DVLDALAGQTQWFG--SGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred ----HHHHHHHhhCccCC--CCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 12233333223222 23344456664433 222245678899999999999999887654
No 263
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.12 E-value=3.4e-05 Score=72.13 Aligned_cols=71 Identities=30% Similarity=0.329 Sum_probs=46.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHh------hh-----------------------hhH----
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV-----------------------GSA---- 105 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~------g~-----------------------~~~---- 105 (539)
++++||||||||+++..++.+. +.++++++..+-...+. |. ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999887644 67888877643322110 00 000
Q ss_pred -HHHHHHHHHHhCCCeEEEEeCcchhhh
Q 009263 106 -RIRDLFKRAKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 106 -~~~~~f~~a~~~~p~Il~iDEiD~l~~ 132 (539)
....+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 013334444556899999999988754
No 264
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=6.1e-05 Score=75.15 Aligned_cols=154 Identities=17% Similarity=0.212 Sum_probs=92.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC-------EEEE-e--------CchhhHHH-hh--hhhHHHHHHHHHHHh-
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------FYQM-A--------GSEFVEVL-VG--VGSARIRDLFKRAKV- 116 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~~-~--------~~~~~~~~-~g--~~~~~~~~~f~~a~~- 116 (539)
+.+..+||+|| +||+++|+++|..+-+. .-.. + -.++.... .| .+...+|++...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 45668899996 68999999999866321 1000 0 01110000 01 123456666555432
Q ss_pred ---CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCC
Q 009263 117 ---NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPG 193 (539)
Q Consensus 117 ---~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~g 193 (539)
....|++||++|.+.. ...|.||+.++ +++.+.++|..|+.++.+-|.+++
T Consensus 100 p~~~~~kV~II~~ad~m~~----------------------~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S-- 153 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV----------------------NAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS-- 153 (290)
T ss_pred cccCCcEEEEeehhhhcCH----------------------HHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--
Confidence 2336999999999753 35688999887 466678888888889999999998
Q ss_pred ccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHH
Q 009263 194 RFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLV 247 (539)
Q Consensus 194 Rf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv 247 (539)
|. ..|.|+. +.++..+++. ..++.. +...++....| ++.....+.
T Consensus 154 Rc-q~i~f~~-~~~~~~~~L~----~~g~~~--~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 154 RT-QIFHFPK-NEAYLIQLLE----QKGLLK--TQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred cc-eeeeCCC-cHHHHHHHHH----HcCCCh--HHHHHHHHHCC-CHHHHHHHh
Confidence 74 5777865 4554444443 222222 22333444445 555555554
No 265
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.10 E-value=2.9e-05 Score=80.34 Aligned_cols=234 Identities=20% Similarity=0.214 Sum_probs=130.9
Q ss_pred cccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHH
Q 009263 27 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSAR 106 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~ 106 (539)
+|.|.+++|+.|.-++---.+...-+.+.++..-+|+|.|.||+.||.|.+++.+-+-...+...-.+ . -+|.++..
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS-S--GVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS-S--GVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC-C--ccccchhh
Confidence 68899999998865543322211112233445557999999999999999999997766555432111 0 13333333
Q ss_pred HHHHHHH-------H-HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--CCCCcEEEE
Q 009263 107 IRDLFKR-------A-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DTGKGVIFL 176 (539)
Q Consensus 107 ~~~~f~~-------a-~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--~~~~~vivI 176 (539)
+++-... | -.....|-+|||+|.+.........+.++ ++++.-- . -|+ .-+.+.-|+
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVME----------QQTISIa-K--AGI~TtLNAR~sIL 486 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVME----------QQTISIA-K--AGINTTLNARTSIL 486 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHH----------hhhhhhh-h--hccccchhhhHHhh
Confidence 3221110 0 01223488999999986443211111000 1111100 0 011 112345677
Q ss_pred EecCCCC-------------cCCccccCCCccceeee-cCCCCHHHHHHHHHHHh--ccCCCCCC-----CCHH------
Q 009263 177 AATNRRD-------------LLDPALLRPGRFDRKIR-IRAPNAKGRTEILKIHA--SKVKMSDS-----VDLS------ 229 (539)
Q Consensus 177 aatn~~~-------------~ld~al~r~gRf~~~i~-v~~P~~~er~~il~~~l--~~~~~~~~-----~~~~------ 229 (539)
++.|... .|+.||++ |||..+- ...|+.+.-..+-++.. ......++ ++..
T Consensus 487 aAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI 564 (721)
T KOG0482|consen 487 AAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYI 564 (721)
T ss_pred hhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHH
Confidence 8887543 47899999 9997543 35676654444333321 11111111 1110
Q ss_pred ----------------HH----------Hh--hC-CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcCC
Q 009263 230 ----------------SY----------AK--NL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 230 ----------------~l----------a~--~t-~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g~ 278 (539)
.+ ++ .. .--|++.|-.+++.+...|..|-.+.+..+|+.+|+.-+....
T Consensus 565 ~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK 642 (721)
T KOG0482|consen 565 SLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSK 642 (721)
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhh
Confidence 00 11 01 1237889999999999999999999999999999998876543
No 266
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.06 E-value=9.9e-05 Score=72.20 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=113.4
Q ss_pred cccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC-----CCEE--EEeCchh---
Q 009263 27 DVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFY--QMAGSEF--- 95 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~--~~~~~~~--- 95 (539)
.|.|+.-+++.+-..+.. +.++. -+.|--+=|+|+|||||.+.++.||+.+- .+++ ++.-.+|
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 377888888877776663 55442 13344456899999999999999999762 2221 1111112
Q ss_pred --hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH---hcCCCCC
Q 009263 96 --VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE---LDGFDTG 170 (539)
Q Consensus 96 --~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---ld~~~~~ 170 (539)
++.|..+-. ..+...+..+..+++++||.|.+.+ +....+..+|.. .++..-+
T Consensus 157 ~~ie~Yk~eL~---~~v~~~v~~C~rslFIFDE~DKmp~-------------------gLld~lkpfLdyyp~v~gv~fr 214 (344)
T KOG2170|consen 157 SKIEDYKEELK---NRVRGTVQACQRSLFIFDEVDKLPP-------------------GLLDVLKPFLDYYPQVSGVDFR 214 (344)
T ss_pred HHHHHHHHHHH---HHHHHHHHhcCCceEEechhhhcCH-------------------hHHHHHhhhhcccccccccccc
Confidence 122222222 2333445567778999999999753 233444555542 2233333
Q ss_pred CcEEEEEecCCCC-cCCc---cccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCC---CCHHHH
Q 009263 171 KGVIFLAATNRRD-LLDP---ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG---WTGARL 243 (539)
Q Consensus 171 ~~vivIaatn~~~-~ld~---al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g---~s~~dl 243 (539)
. -|+|.-+|.-. .+.. ...+.|+--+.+.+.-....-....+.........+..++ ..+....-- ..-+++
T Consensus 215 k-aIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~-~~lid~fIPFLPLek~hV 292 (344)
T KOG2170|consen 215 K-AIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLIS-NNLIDHFIPFLPLEKRHV 292 (344)
T ss_pred c-eEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccch-hhHHhhccCcCcccHHHH
Confidence 3 34444555322 2221 1223344333333332222222222211111112222222 222222222 245666
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcCCCcCCcccccccc
Q 009263 244 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQ 290 (539)
Q Consensus 244 ~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~ 290 (539)
...++... .+++ -..+.+-+++.++.+..-++. .+..+..-.
T Consensus 293 ~~C~r~el---~~rg-~~~d~~~~erva~~l~ffp~~-~k~Fs~sGC 334 (344)
T KOG2170|consen 293 RSCIRAEL---RKRG-LAPDQDFVERVANSLSFFPES-SKLFSSSGC 334 (344)
T ss_pred HHHHHHHH---Hhcc-cccchHHHHHHHHhhcccccc-cceeecccc
Confidence 66655433 2333 567777788888887776654 334444433
No 267
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.05 E-value=1.2e-05 Score=83.25 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=56.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHh------hh--------hhHHHHHHHHHHHhC
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV--------GSARIRDLFKRAKVN 117 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~------g~--------~~~~~~~~f~~a~~~ 117 (539)
|+.+..-++|+|+||+|||+|+..+|... +.++++++..+-..... +. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 46666779999999999999999998765 45788887765333211 10 112245566666677
Q ss_pred CCeEEEEeCcchhhhh
Q 009263 118 KPSVIFIDEIDALATR 133 (539)
Q Consensus 118 ~p~Il~iDEiD~l~~~ 133 (539)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 268
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=7.3e-05 Score=75.15 Aligned_cols=126 Identities=14% Similarity=0.194 Sum_probs=84.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCC-----------C--EEEEeCchhhHHHhhhhhHHHHHHHHHHHh-----CCC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------P--FYQMAGSEFVEVLVGVGSARIRDLFKRAKV-----NKP 119 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~-----------~--~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~-----~~p 119 (539)
.+...||+|+.|+||+.+++++++.+-+ | +..++... ...+...++.+.+.... ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCCc
Confidence 4557899999999999999999998722 2 22222000 00122345555444421 245
Q ss_pred eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceee
Q 009263 120 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKI 199 (539)
Q Consensus 120 ~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i 199 (539)
.|++||++|.+.. ...|.||..++. ++..+++|..|+.++.+-+.+++ | +.++
T Consensus 92 KvvII~~~e~m~~----------------------~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--R-c~~~ 144 (299)
T PRK07132 92 KILIIKNIEKTSN----------------------SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--R-CQVF 144 (299)
T ss_pred eEEEEecccccCH----------------------HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--C-eEEE
Confidence 6999999988642 345678888874 55667777777778888888887 5 4678
Q ss_pred ecCCCCHHHHHHHHHH
Q 009263 200 RIRAPNAKGRTEILKI 215 (539)
Q Consensus 200 ~v~~P~~~er~~il~~ 215 (539)
++++|+.++..+.+..
T Consensus 145 ~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 145 NVKEPDQQKILAKLLS 160 (299)
T ss_pred ECCCCCHHHHHHHHHH
Confidence 9999998877766553
No 269
>PHA00729 NTP-binding motif containing protein
Probab=98.04 E-value=8.1e-06 Score=77.98 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=23.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.+++|+|+||||||++|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 270
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.03 E-value=2.5e-05 Score=74.78 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~ 81 (539)
.|..+||||+||+|||++|+.+++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 356699999999999999999973
No 271
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.03 E-value=4.1e-06 Score=71.11 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhcC
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~ 84 (539)
|+|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988764
No 272
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.01 E-value=2e-05 Score=83.98 Aligned_cols=79 Identities=23% Similarity=0.426 Sum_probs=57.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhh------h--------hhHHHHHHHHHHHhC
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVG------V--------GSARIRDLFKRAKVN 117 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g------~--------~~~~~~~~f~~a~~~ 117 (539)
|+.+..-++|+|+||+|||+|+..++... +.++++++..+....... . ....+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56666679999999999999999998765 678888887665443211 0 112244556666667
Q ss_pred CCeEEEEeCcchhhhh
Q 009263 118 KPSVIFIDEIDALATR 133 (539)
Q Consensus 118 ~p~Il~iDEiD~l~~~ 133 (539)
.|.+|+||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988643
No 273
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.98 E-value=1.5e-05 Score=89.89 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=131.4
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHHhcCh--hhhhhcCCCCC-c-eEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNP--ELFDKMGIKPP-H-GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~--~~~~~~g~~~~-~-giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
..|..++.+.+..++.|.......+.+.+...+.+ ..|...+.... . .++++||||+|||+.+..+|.+++..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 46788888888899998887766666655543322 12222211111 1 36999999999999999999999999999
Q ss_pred EeCchhhHHHhhh-------hhHHHHHHHH---HHH-hCCC-eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHH
Q 009263 90 MAGSEFVEVLVGV-------GSARIRDLFK---RAK-VNKP-SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 157 (539)
Q Consensus 90 ~~~~~~~~~~~g~-------~~~~~~~~f~---~a~-~~~p-~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (539)
.+.+...+..... +...+...|. ... .... -||++||+|.+.....+ .-..+
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg----------------~v~~l 451 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRG----------------GVSKL 451 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhh----------------hHHHH
Confidence 9988765543221 1112222230 000 0122 28999999987652111 11222
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCC
Q 009263 158 NQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLP 236 (539)
Q Consensus 158 ~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~ 236 (539)
..+.. ...+-+|+++|..+......+. |.+..++|+.|+...+..-+...+....+. .+-.++.+...+
T Consensus 452 ~~l~~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~- 521 (871)
T KOG1968|consen 452 SSLCK-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS- 521 (871)
T ss_pred HHHHH-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc-
Confidence 33332 2345677788877765554444 556789999999999888777776554433 222367777765
Q ss_pred CCCHHHHHHHHHHHHHH
Q 009263 237 GWTGARLAQLVQEAALV 253 (539)
Q Consensus 237 g~s~~dl~~lv~~A~~~ 253 (539)
++||++.+..-..+
T Consensus 522 ---~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 522 ---GGDIRQIIMQLQFW 535 (871)
T ss_pred ---ccCHHHHHHHHhhh
Confidence 55888887776655
No 274
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.96 E-value=6.5e-05 Score=72.65 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=32.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
|+..+.-++|+||||+|||+++..+|.+. +.++++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45666679999999999999999998744 7788888876
No 275
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.95 E-value=7.6e-05 Score=72.46 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=48.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhh-----------------------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV----------------------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~----------------------------- 102 (539)
|+.....+++.||||||||+++..++... +.++++++..+-...+...
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 45666679999999999999986665433 5677777654322211000
Q ss_pred --hhHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 103 --GSARIRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 103 --~~~~~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
....+..+........|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223334444445578899999998764
No 276
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.91 E-value=7.8e-05 Score=75.39 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=51.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHH----hh------------hhhHHHHHHHHHHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----VG------------VGSARIRDLFKRAK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~----~g------------~~~~~~~~~f~~a~ 115 (539)
|+.....++|+||||||||+|+..++.+. +.++++++..+..... .| ..+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45666679999999999999988876654 6778888765433220 01 11112222222334
Q ss_pred hCCCeEEEEeCcchhhhh
Q 009263 116 VNKPSVIFIDEIDALATR 133 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~~ 133 (539)
...+++|+||-+..+.++
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999998754
No 277
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.89 E-value=7.8e-05 Score=66.49 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.+.-++++|+||+|||+++.-+++.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34568999999999999999999876
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.86 E-value=0.00012 Score=71.36 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=32.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh---cCCCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~---~~~~~~~~~~~~ 94 (539)
|+..+..++++|+||||||+++.+++.+ .+.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 5667777999999999999999999754 367787777644
No 279
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.85 E-value=0.00033 Score=72.59 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=41.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhh
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~ 132 (539)
....++++.||+|||||+++.+++... | -.++.+.+...... ..+. .-...++|+|||+..+.-
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg--~v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIG--LVGRWDVVAFDEVATLKF 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHh--hhccCCEEEEEcCCCCcC
Confidence 345689999999999999999998762 3 23333444332111 1111 123557999999988653
No 280
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.0014 Score=67.26 Aligned_cols=177 Identities=15% Similarity=0.128 Sum_probs=97.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-------H----------------------hhh--h
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-------L----------------------VGV--G 103 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-------~----------------------~g~--~ 103 (539)
++.-+.|.||..+|||++...+.+.+ +...+++++..+... + ... .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 45568999999999999999997665 666777766543210 0 000 1
Q ss_pred hHHHHHHHHHH---HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe-c
Q 009263 104 SARIRDLFKRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA-T 179 (539)
Q Consensus 104 ~~~~~~~f~~a---~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa-t 179 (539)
.......|+.. ....|-||+|||||.+..... .....-..+..+...-........+.+|.+ +
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-------------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~ 176 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-------------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGS 176 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-------------hHHHHHHHHHHHHHhcccCcccceEEEEEecC
Confidence 11223334432 224677999999999875321 111112222233222111111122333222 2
Q ss_pred CCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 180 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 180 n~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
..+......-.+|..+...|+++.-+.++-..++..+-.. ..... ++.+-..+.| -|.=+..+|....
T Consensus 177 t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgG-hP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 177 TEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGG-HPYLVQKACYLLV 244 (331)
T ss_pred cccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCC-CHHHHHHHHHHHH
Confidence 2222222223456566678888888999998888776433 22222 7888888877 4655555555443
No 281
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.83 E-value=9.6e-05 Score=70.08 Aligned_cols=74 Identities=22% Similarity=0.402 Sum_probs=44.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEE-------------EEeCchhhHH---HhhhhhHHHHHHHHHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFY-------------QMAGSEFVEV---LVGVGSARIRDLFKRA 114 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~-------------~~~~~~~~~~---~~g~~~~~~~~~f~~a 114 (539)
+...+.++|.||+|+|||+|.+.++... |.++- .++..+-... .......++..+++.+
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~ 101 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKA 101 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhc
Confidence 3445678999999999999999998533 43321 1111110000 0011124456666666
Q ss_pred HhCCCeEEEEeCcch
Q 009263 115 KVNKPSVIFIDEIDA 129 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~ 129 (539)
....|.++++||.-.
T Consensus 102 ~~~~p~llllDEp~~ 116 (199)
T cd03283 102 KKGEPVLFLLDEIFK 116 (199)
T ss_pred cCCCCeEEEEecccC
Confidence 555899999999743
No 282
>PRK08118 topology modulation protein; Reviewed
Probab=97.82 E-value=3.1e-05 Score=71.27 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=41.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDE 126 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDE 126 (539)
-|+++||||+||||+|+.|++.++.|++.++.--+...+..........+...... .++ .+||-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~-~~~-wVidG 66 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVK-EDE-WIIDG 66 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhc-CCC-EEEeC
Confidence 58999999999999999999999999988875432222333333333444443332 344 44454
No 283
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.82 E-value=0.00013 Score=77.40 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=27.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
..-++||+|.|||||+.+.|++++-....++..
T Consensus 481 GDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 481 GDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred cceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 344699999999999999999999887766653
No 284
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.80 E-value=5.5e-05 Score=72.56 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=21.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.+.-+.|.||+|||||||.+.+|+-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33448899999999999999999843
No 285
>PRK05973 replicative DNA helicase; Provisional
Probab=97.79 E-value=0.00022 Score=69.13 Aligned_cols=40 Identities=38% Similarity=0.381 Sum_probs=31.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
|+.++.-++|.|+||+|||+++-.++.+. |.++++++..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 56666779999999999999999887654 77787776543
No 286
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.79 E-value=0.00045 Score=69.79 Aligned_cols=162 Identities=17% Similarity=0.234 Sum_probs=91.5
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH------H
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV------L 99 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~------~ 99 (539)
..+.+.+.....|..++.. ++ -..|..+.|+|-+|||||.+++.+-+.++.+.+.+++-+..+. .
T Consensus 6 ~~v~~Re~qi~~L~~Llg~--~~-------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN--NS-------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCC--CC-------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 4566777777777665432 11 1357788999999999999999999999999999887654322 0
Q ss_pred ---------hhhh----hHHHHH---HHHH--HHhC--CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHH
Q 009263 100 ---------VGVG----SARIRD---LFKR--AKVN--KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQ 159 (539)
Q Consensus 100 ---------~g~~----~~~~~~---~f~~--a~~~--~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (539)
.|.. ...+.. .|.+ +... ..-+|++|.+|.+.... ...+..
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~-------------------a~ll~~ 137 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD-------------------AILLQC 137 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc-------------------hHHHHH
Confidence 0110 111221 2222 1112 23478899999986321 122333
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccc-eeeecCCCCHHHHHHHHHHHhc
Q 009263 160 LLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHAS 218 (539)
Q Consensus 160 ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~-~~i~v~~P~~~er~~il~~~l~ 218 (539)
++..-+ +-+...+.+|.+....+.. -+.+-|-++ .+++||.|+.++.+.|+..--.
T Consensus 138 l~~L~e-l~~~~~i~iils~~~~e~~--y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 138 LFRLYE-LLNEPTIVIILSAPSCEKQ--YLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred HHHHHH-HhCCCceEEEEeccccHHH--hhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 332211 1122233343333222211 111122333 3789999999999999865544
No 287
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.78 E-value=0.00021 Score=68.79 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=31.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
|+..+.-++++|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45666679999999999999999998765 5677788654
No 288
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.76 E-value=2.1e-05 Score=67.98 Aligned_cols=30 Identities=40% Similarity=0.847 Sum_probs=26.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
|+|.||||+||||+|+.+|+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998776553
No 289
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.75 E-value=0.00016 Score=73.13 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=51.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-H---hh------------hhhHHHHHHHHHHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-L---VG------------VGSARIRDLFKRAK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-~---~g------------~~~~~~~~~f~~a~ 115 (539)
|++..+-+.++||||||||+|+..++.+. +.++++++...-... + .| ..+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45566668999999999999999987544 677888876442221 0 00 11111222222234
Q ss_pred hCCCeEEEEeCcchhhhh
Q 009263 116 VNKPSVIFIDEIDALATR 133 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~~ 133 (539)
...+++|+||-+-.+.++
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567889999999988753
No 290
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.75 E-value=9.4e-05 Score=78.89 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=55.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHh------hh--------hhHHHHHHHHHHHhC
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV--------GSARIRDLFKRAKVN 117 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~------g~--------~~~~~~~~f~~a~~~ 117 (539)
|+.++.-++|.|+||+|||+|+..++... +.++++++..+-..... +. ....+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666779999999999999999997755 45788888765443211 10 011234455556667
Q ss_pred CCeEEEEeCcchhhh
Q 009263 118 KPSVIFIDEIDALAT 132 (539)
Q Consensus 118 ~p~Il~iDEiD~l~~ 132 (539)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998754
No 291
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0002 Score=80.64 Aligned_cols=163 Identities=23% Similarity=0.313 Sum_probs=105.5
Q ss_pred CcCcccCc-HHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEEEeC
Q 009263 24 KFSDVAGI-DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 92 (539)
Q Consensus 24 ~~~dv~G~-~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~~~~ 92 (539)
.++-++|. ++...++.+++ ... ..++-+|+|.||+|||.++.-+|+.. +..++.++.
T Consensus 184 kldPvigr~deeirRvi~iL---~Rr---------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEIL---SRK---------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHHHHHHH---hcc---------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36778887 55544444433 322 12467999999999999999999866 234566665
Q ss_pred chhh--HHHhhhhhHHHHHHHHHHHh-CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 009263 93 SEFV--EVLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 169 (539)
Q Consensus 93 ~~~~--~~~~g~~~~~~~~~f~~a~~-~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 169 (539)
..+. .++.|..+.+++.+.+.+.. ...-||||||++-+.+...+ .......|- |..+- .
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--------------~~~~d~~nl-Lkp~L---~ 313 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--------------YGAIDAANL-LKPLL---A 313 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc--------------chHHHHHHh-hHHHH---h
Confidence 5433 33567778889999888874 45569999999998765432 001122222 22221 2
Q ss_pred CCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc
Q 009263 170 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 170 ~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~ 219 (539)
+.++.+|+||...+ .-||++-| ||+.+ .++.|+.+....||...-..
T Consensus 314 rg~l~~IGatT~e~Y~k~iekdPalEr--rw~l~-~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 314 RGGLWCIGATTLETYRKCIEKDPALER--RWQLV-LVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cCCeEEEecccHHHHHHHHhhCcchhh--Cccee-EeccCcccchhhhhhhhhhh
Confidence 34489998876322 35899999 99854 48888887766666554433
No 292
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.75 E-value=4.9e-05 Score=81.34 Aligned_cols=63 Identities=25% Similarity=0.444 Sum_probs=45.9
Q ss_pred cCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-CCCEEEEeC
Q 009263 23 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAG 92 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-~~~~~~~~~ 92 (539)
.-|+|+.|++++++++.+.+.. ...- + ...+.++|.||||+|||+||++|++.+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl------~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGL------E-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhc------C-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3488999999999888776632 1111 1 233578999999999999999999977 346666544
No 293
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.75 E-value=0.00019 Score=64.56 Aligned_cols=28 Identities=29% Similarity=0.623 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..++|+||+|+|||+|.|++|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4455669999999999999999999843
No 294
>PRK07261 topology modulation protein; Provisional
Probab=97.74 E-value=5.7e-05 Score=69.86 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=30.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
-++++|+||+||||||+.++..++.|++..+.-.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 378999999999999999999999998877654443
No 295
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.74 E-value=0.00024 Score=70.57 Aligned_cols=161 Identities=20% Similarity=0.324 Sum_probs=94.8
Q ss_pred CcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHH---hcCCCEEEEeCchhhH--H-
Q 009263 26 SDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG---EAGVPFYQMAGSEFVE--V- 98 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~---~~~~~~~~~~~~~~~~--~- 98 (539)
..+.|..+..+.+.+++.. ... ...+.+++.||.|+|||++....-. +.+-.|+.+....+.. +
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 3467777777778777764 222 2345799999999999998766533 5666676654332221 1
Q ss_pred ------------------HhhhhhHHHHHHHHHHHh-----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHH
Q 009263 99 ------------------LVGVGSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 155 (539)
Q Consensus 99 ------------------~~g~~~~~~~~~f~~a~~-----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (539)
..|.....+..++...+. ..+.|.++||||.+.+.. ++.
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------------rQt 156 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------------RQT 156 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------------hhH
Confidence 111122223333332222 123355668999876431 233
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEecCCCCc---CCccccCCCcccee-eecCC-CCHHHHHHHHHHHh
Q 009263 156 TLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRFDRK-IRIRA-PNAKGRTEILKIHA 217 (539)
Q Consensus 156 ~l~~ll~~ld~~~~~~~vivIaatn~~~~---ld~al~r~gRf~~~-i~v~~-P~~~er~~il~~~l 217 (539)
.+..++..-. ..+.++.||+.|.+.+. |...+.+ ||.-. |++++ .+.++-.++++..+
T Consensus 157 llYnlfDisq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 157 LLYNLFDISQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 3444443322 23567888988887664 4566667 88753 66654 46788888888776
No 296
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.74 E-value=0.00036 Score=68.41 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGV 85 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~ 85 (539)
.+.-++|.||+|+|||+|++.+++....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4456999999999999999999998754
No 297
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.73 E-value=0.00012 Score=67.20 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=63.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEEeCchhh--------HHHh-----hhhhHHHHHHHHHHHhCCCe
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFV--------EVLV-----GVGSARIRDLFKRAKVNKPS 120 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~~~~~~~--------~~~~-----g~~~~~~~~~f~~a~~~~p~ 120 (539)
+.++..+.|.||+|+|||+|.+.+++.... --+.+++.... .... -.+.++.+-.+..|....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 456667999999999999999999986521 11222222111 0000 11233455667778888999
Q ss_pred EEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc
Q 009263 121 VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL 184 (539)
Q Consensus 121 Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ 184 (539)
++++||.-.- .+......+..++.++. .. +..+|.+|++++.
T Consensus 103 illlDEP~~~------------------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~ 144 (163)
T cd03216 103 LLILDEPTAA------------------LTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDE 144 (163)
T ss_pred EEEEECCCcC------------------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHH
Confidence 9999998542 22333445556665552 12 3455556666553
No 298
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.72 E-value=2.5e-05 Score=73.71 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=58.3
Q ss_pred EEEECCCCCcHHHHHHHH-HHh---cCCCEEEEeCchhhHH----HhhhhhH-------------HHHHHHHHHHhCCCe
Q 009263 62 VLLEGPPGCGKTLVAKAI-AGE---AGVPFYQMAGSEFVEV----LVGVGSA-------------RIRDLFKRAKVNKPS 120 (539)
Q Consensus 62 iLL~GppGtGKT~la~al-A~~---~~~~~~~~~~~~~~~~----~~g~~~~-------------~~~~~f~~a~~~~p~ 120 (539)
.+++|.||+|||+.|-.. ... .|.+++. +...+.-. ..+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988665 433 2666665 44322211 0000000 001111111111467
Q ss_pred EEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeee
Q 009263 121 VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIR 200 (539)
Q Consensus 121 Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~ 200 (539)
+++|||++.+.+.+... .......+ .++.. ....++-++.+|..+..+|+.+++ ..+.++.
T Consensus 82 liviDEa~~~~~~r~~~------------~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~ 142 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK------------GKKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYH 142 (193)
T ss_dssp EEEETTGGGTSB---T-------------T----HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEE
T ss_pred EEEEECChhhcCCCccc------------cccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEE
Confidence 99999999988776431 01112223 22222 244578888899999999998887 7777766
Q ss_pred cCCC
Q 009263 201 IRAP 204 (539)
Q Consensus 201 v~~P 204 (539)
+..+
T Consensus 143 ~~k~ 146 (193)
T PF05707_consen 143 CRKL 146 (193)
T ss_dssp EEE-
T ss_pred EEee
Confidence 6544
No 299
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.71 E-value=0.00045 Score=67.40 Aligned_cols=40 Identities=35% Similarity=0.480 Sum_probs=31.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh---cCCCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~---~~~~~~~~~~~~ 94 (539)
|+.++..+|++||||+|||+++..++.+ .|.+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 5677778999999999999999887654 377788776544
No 300
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.71 E-value=0.00013 Score=67.10 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.++..++|+|+||||||++|+.+|..++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3567899999999999999999999999988854
No 301
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.70 E-value=2.9e-05 Score=72.61 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=20.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~ 81 (539)
.+.-+.|+||+|+|||||.|++..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 344489999999999999999976
No 302
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.00029 Score=66.41 Aligned_cols=70 Identities=26% Similarity=0.378 Sum_probs=45.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc--C------CCEEEEeCch-hhHHHhh-------------hhhHHHHHHHHHHHhC
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA--G------VPFYQMAGSE-FVEVLVG-------------VGSARIRDLFKRAKVN 117 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~--~------~~~~~~~~~~-~~~~~~g-------------~~~~~~~~~f~~a~~~ 117 (539)
.+.|+.||||+|||++.+-+|+-+ + ..+..++-.+ ......| ...-+-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 358999999999999999999865 2 2233343222 2111111 1112234456667889
Q ss_pred CCeEEEEeCcch
Q 009263 118 KPSVIFIDEIDA 129 (539)
Q Consensus 118 ~p~Il~iDEiD~ 129 (539)
+|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999965
No 303
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00012 Score=75.57 Aligned_cols=110 Identities=22% Similarity=0.384 Sum_probs=61.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc----C-CCEEEEeCchhh-------HH---Hhhh------hhHHHHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA----G-VPFYQMAGSEFV-------EV---LVGV------GSARIRDLFKRAK 115 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~----~-~~~~~~~~~~~~-------~~---~~g~------~~~~~~~~f~~a~ 115 (539)
..+..++|+||+|+|||+++..||..+ + ..+..++...+. .. ..+. ....+...+. .
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~--~ 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA--E 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--H
Confidence 445679999999999999999999764 3 345555544432 00 1111 1111222222 2
Q ss_pred hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC-CCcEEEEEecCCCCcCCccc
Q 009263 116 VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNRRDLLDPAL 189 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~vivIaatn~~~~ld~al 189 (539)
....++|+||....... ...+.+.+..+..... ...++|+.+|+..+.++..+
T Consensus 213 l~~~DlVLIDTaG~~~~---------------------d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQR---------------------DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred hcCCCEEEEcCCCCCcc---------------------cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 24557999999864321 1123344444443333 24577777777666665443
No 304
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.68 E-value=0.00017 Score=68.35 Aligned_cols=67 Identities=28% Similarity=0.445 Sum_probs=43.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCC----CEEEEeC-chhhHH---------HhhhhhHHHHHHHHHHHhCCCeEEEEeC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGV----PFYQMAG-SEFVEV---------LVGVGSARIRDLFKRAKVNKPSVIFIDE 126 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~----~~~~~~~-~~~~~~---------~~g~~~~~~~~~f~~a~~~~p~Il~iDE 126 (539)
-+++.||+|+|||++++++++.... .++.+.. .++... .++.....+.+.+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887742 2222211 111100 0121222345566677778899999999
Q ss_pred c
Q 009263 127 I 127 (539)
Q Consensus 127 i 127 (539)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 305
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.68 E-value=0.00028 Score=68.57 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=31.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~ 94 (539)
|+..+.-+.|+||||+|||+++..++... +..+++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 46666778999999999999999998543 25677777654
No 306
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.68 E-value=0.00012 Score=72.50 Aligned_cols=68 Identities=26% Similarity=0.426 Sum_probs=43.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCC----------CEEEEe-CchhhHHHh-------h------hhhHHHHHHHHHHH
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGV----------PFYQMA-GSEFVEVLV-------G------VGSARIRDLFKRAK 115 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~----------~~~~~~-~~~~~~~~~-------g------~~~~~~~~~f~~a~ 115 (539)
.+++|.||||+|||+|.+++++.+.. ++..++ ..++...+. + ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999997732 222221 112211110 0 01112334566667
Q ss_pred hCCCeEEEEeCc
Q 009263 116 VNKPSVIFIDEI 127 (539)
Q Consensus 116 ~~~p~Il~iDEi 127 (539)
...|.|+++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 307
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.68 E-value=0.00022 Score=82.63 Aligned_cols=139 Identities=29% Similarity=0.385 Sum_probs=91.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH--Hhhh-------hhHHH-HHHHHHHHhCCCeEEEEeCc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGV-------GSARI-RDLFKRAKVNKPSVIFIDEI 127 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~--~~g~-------~~~~~-~~~f~~a~~~~p~Il~iDEi 127 (539)
..+++||-|.||+|||+|..++|+..|..++.++.++-.+. ..|. ++-+. ..-|-.|.+... -|++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~-WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG-WVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCC-EEEeehh
Confidence 45689999999999999999999999999999988764322 1111 11112 223444554444 7889999
Q ss_pred chhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHH--------hc-CCCCCCcEEEEEecCCCC------cCCccccCC
Q 009263 128 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE--------LD-GFDTGKGVIFLAATNRRD------LLDPALLRP 192 (539)
Q Consensus 128 D~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--------ld-~~~~~~~vivIaatn~~~------~ld~al~r~ 192 (539)
.-.. +....-+|..|.. +| .|.-++++.|+||-|+.+ .|+..++.
T Consensus 1621 NLaS-------------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n- 1680 (4600)
T COG5271 1621 NLAS-------------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN- 1680 (4600)
T ss_pred hhhH-------------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh-
Confidence 6532 1122233333332 22 234567889999888655 38888888
Q ss_pred CccceeeecCCCCHHHHHHHHHHHhcc
Q 009263 193 GRFDRKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 193 gRf~~~i~v~~P~~~er~~il~~~l~~ 219 (539)
||. ++++...+.++...|.......
T Consensus 1681 -RFs-vV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1681 -RFS-VVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred -hhh-eEEecccccchHHHHHHhhCCc
Confidence 886 5667777777777777665553
No 308
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.68 E-value=8.8e-05 Score=68.90 Aligned_cols=74 Identities=23% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCC--EEEEeCch---hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE---FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~~~~~~---~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
+.++..+.|.||+|+|||||++.+++..... -+.+++.. ......-.+.++.+-.+..+....|.++++||.-.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 3455678899999999999999999865211 12222111 00000012233445566777778899999999854
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.67 E-value=0.00034 Score=67.65 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=30.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~ 94 (539)
|+..+..+|+.||||||||+|+..++.+. +.++++++..+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 56677779999999999999999876433 78888887644
No 310
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00057 Score=71.81 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=70.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKD 140 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~ 140 (539)
.++|+||.++|||++++.+.....-..++++..+........ ......+..+.....+.+|||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh--------
Confidence 899999999999999999888876556666665554432221 1112222222222446999999988532
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHH
Q 009263 141 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTE 211 (539)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~ 211 (539)
....+..+. |.... .+++.+++........+-.=+|| ...+.+.+.+..|...
T Consensus 109 ------------W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ------------WERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLK 161 (398)
T ss_pred ------------HHHHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHh
Confidence 223333333 21111 34444433322222222223468 5678888889988865
No 311
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.66 E-value=0.00076 Score=68.93 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=25.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~ 86 (539)
..|..+.|+|+-|+|||++.+.+-+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 466789999999999999999998877433
No 312
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.64 E-value=0.00048 Score=70.85 Aligned_cols=74 Identities=24% Similarity=0.308 Sum_probs=44.1
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCC-----CEEEEeCchhh-------HH---------HhhhhhHHHH---HHHHHHH--
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGV-----PFYQMAGSEFV-------EV---------LVGVGSARIR---DLFKRAK-- 115 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~-----~~~~~~~~~~~-------~~---------~~g~~~~~~~---~~f~~a~-- 115 (539)
.+|+||||+|||+|++.|++.... .++.+...+.. .. +.......++ ..++.|.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987633 32333222221 11 1111112222 2333332
Q ss_pred --hCCCeEEEEeCcchhhhhhc
Q 009263 116 --VNKPSVIFIDEIDALATRRQ 135 (539)
Q Consensus 116 --~~~p~Il~iDEiD~l~~~~~ 135 (539)
.....+||||||+++.....
T Consensus 252 ~e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHHH
Confidence 23456999999999987653
No 313
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.64 E-value=0.00027 Score=68.30 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=64.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---C------CCEEEEeCchhh-H-HHh---h------------------h
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---G------VPFYQMAGSEFV-E-VLV---G------------------V 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~------~~~~~~~~~~~~-~-~~~---g------------------~ 102 (539)
|+....-+.|+||||+|||+++..+|... + ..+++++..+-. . ... . .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 46666779999999999999999998754 3 566777665421 1 000 0 0
Q ss_pred hhHHHHHHHHHH----HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 103 GSARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 103 ~~~~~~~~f~~a----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
....+...+... ....+++|+||-+..+........ + ........+..++..|..+....++.||.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~-~--------~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 165 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR-G--------MLAERARLLSQALRKLLRLADKFNVAVVFT 165 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC-c--------hHHHHHHHHHHHHHHHHHHHHHhCcEEEEE
Confidence 011112222222 245778999999998765321100 0 011223445555555554444456666655
Q ss_pred cC
Q 009263 179 TN 180 (539)
Q Consensus 179 tn 180 (539)
..
T Consensus 166 nq 167 (226)
T cd01393 166 NQ 167 (226)
T ss_pred EE
Confidence 43
No 314
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.62 E-value=0.00028 Score=63.22 Aligned_cols=72 Identities=25% Similarity=0.444 Sum_probs=45.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCC--EEEEeCc---hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGS---EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~~~~~---~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
+.++..+.|.||+|+|||+|++++++..... -+.++.. .+... . .+..+.+-.+..+....|.++++||...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-l-S~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-L-SGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-C-CHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4566678999999999999999999975210 0111110 00000 1 1123344456677778899999999864
No 315
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.62 E-value=0.0002 Score=63.69 Aligned_cols=35 Identities=34% Similarity=0.584 Sum_probs=28.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
++++||||+|||++|+.+++.++ ...++...+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHH
Confidence 68999999999999999999998 445565555543
No 316
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.60 E-value=0.0002 Score=69.92 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=22.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.-+.|.||.|+|||||.|++++-+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 344458899999999999999999944
No 317
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.60 E-value=0.00039 Score=60.02 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=39.7
Q ss_pred CcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 26 SDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..|.|++-+++.+.+.+.. +.++. -+.|--+-|+||||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4689999998888877764 44431 1334445689999999999999999985
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00057 Score=71.12 Aligned_cols=110 Identities=13% Similarity=0.168 Sum_probs=61.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc-------CCCEEEEeCchhhHH-------Hh---h------hhhHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSEFVEV-------LV---G------VGSARIRDLFKRA 114 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~-------~~~~~~~~~~~~~~~-------~~---g------~~~~~~~~~f~~a 114 (539)
.|..++|+||+|+|||+++..+|..+ +..+..+++..+... |. + .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35679999999999999999998765 345555555443211 10 0 1112233333332
Q ss_pred HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCC-CcEEEEEecCCCCcCCccc
Q 009263 115 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG-KGVIFLAATNRRDLLDPAL 189 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~vivIaatn~~~~ld~al 189 (539)
....+|+||.+...... ...+.++...++....+ ..++|+.+|.....+...+
T Consensus 253 --~~~DlVLIDTaGr~~~~--------------------~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKD--------------------FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --CCCCEEEEcCCCCCccC--------------------HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 45579999999775311 11133443444433333 4567777776666555433
No 319
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.58 E-value=0.00055 Score=67.85 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=45.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC---CCEEEEe-CchhhHH------HhhhhhHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMA-GSEFVEV------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~---~~~~~~~-~~~~~~~------~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
..+++.||+|+|||++++++..... ..++.+. ..++.-. ............+..+.+..|++++++|+..
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 3589999999999999999987764 2344431 1121100 0011112356677778889999999999954
No 320
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.57 E-value=9.5e-05 Score=75.34 Aligned_cols=28 Identities=46% Similarity=0.866 Sum_probs=22.7
Q ss_pred cCCCCCce--EEEECCCCCcHHHHHHHHHH
Q 009263 54 MGIKPPHG--VLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 54 ~g~~~~~g--iLL~GppGtGKT~la~alA~ 81 (539)
+.+....| +.|.||+||||||+.|.||+
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33444445 77999999999999999998
No 321
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.56 E-value=0.00021 Score=66.31 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=44.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCC-------------CEEEEeCchhhHHHh------h------hhhHHHHHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------------PFYQMAGSEFVEVLV------G------VGSARIRDL 110 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~-------------~~~~~~~~~~~~~~~------g------~~~~~~~~~ 110 (539)
+.++.-+.|.||+|+|||||.+++....|. ++.++.-.++...+- . .+..+.+-.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 345556889999999999999999743322 122211111111110 0 012344555
Q ss_pred HHHHHhCC--CeEEEEeCcch
Q 009263 111 FKRAKVNK--PSVIFIDEIDA 129 (539)
Q Consensus 111 f~~a~~~~--p~Il~iDEiD~ 129 (539)
+..+.... |.++++||.-.
T Consensus 98 laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 98 LASELFSEPPGTLFILDEPST 118 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcc
Confidence 66677778 99999999854
No 322
>PRK14974 cell division protein FtsY; Provisional
Probab=97.53 E-value=0.00078 Score=68.80 Aligned_cols=74 Identities=27% Similarity=0.326 Sum_probs=45.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-------H---hhh----------hhHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-------L---VGV----------GSARIRDLFKRA 114 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-------~---~g~----------~~~~~~~~f~~a 114 (539)
.|.-++|+||||+|||+++..+|..+ +..+..+++..+... + .+. ....+...+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46679999999999999888888765 555655655433211 0 000 001223334444
Q ss_pred HhCCCeEEEEeCcchhh
Q 009263 115 KVNKPSVIFIDEIDALA 131 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~l~ 131 (539)
+....++|+||....+.
T Consensus 219 ~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 219 KARGIDVVLIDTAGRMH 235 (336)
T ss_pred HhCCCCEEEEECCCccC
Confidence 55556799999987653
No 323
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00024 Score=65.61 Aligned_cols=107 Identities=23% Similarity=0.335 Sum_probs=61.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCC--EEEEeCchhh---------------------HHHh----hhhhHHHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSEFV---------------------EVLV----GVGSARIR 108 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~~~~~~~~---------------------~~~~----g~~~~~~~ 108 (539)
+.++..+.|.||+|+|||+|.+.+++..... -+.+++.... ...+ -.+.++.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 4566679999999999999999999965210 1112211110 0000 11122334
Q ss_pred HHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcC
Q 009263 109 DLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLL 185 (539)
Q Consensus 109 ~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~l 185 (539)
-.+..+....|.+|++||.-.-. +......+..++..+. . +..+|.+|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~gL------------------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATSAL------------------DPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCC------------------CHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 45666777899999999975422 2222344555555542 2 24566677776654
No 324
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.51 E-value=0.00055 Score=66.85 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=32.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~ 93 (539)
|+.++.-++|.|+||+|||+++..++... +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 67777789999999999999999887654 7788888753
No 325
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.50 E-value=0.00073 Score=63.91 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=26.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
+.++|.||||||||++++.+...+ +..++.+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 457889999999999999987644 66777776654
No 326
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00013 Score=66.43 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=46.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCC--EEEEeCchhhH-------HHh-----hhhhHHHHHHHHHHHhCCCeE
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSEFVE-------VLV-----GVGSARIRDLFKRAKVNKPSV 121 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~~~~~~~~~-------~~~-----g~~~~~~~~~f~~a~~~~p~I 121 (539)
+.++..+.|.||+|+|||+|++++++..... -++++...... ... -.+.+..+-.+..+....|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 4455679999999999999999999976421 12333322110 000 112233444566666678899
Q ss_pred EEEeCcch
Q 009263 122 IFIDEIDA 129 (539)
Q Consensus 122 l~iDEiD~ 129 (539)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999875
No 327
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.50 E-value=0.00054 Score=68.19 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=31.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~ 93 (539)
|+.+..-++|.||||+|||+++..++..+ +.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 56667779999999999999999987654 6677777653
No 328
>PRK09354 recA recombinase A; Provisional
Probab=97.50 E-value=0.00053 Score=70.00 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=50.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-H---hh------------hhhHHHHHHHHHHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-L---VG------------VGSARIRDLFKRAK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-~---~g------------~~~~~~~~~f~~a~ 115 (539)
|+...+-++|+||||||||+|+-.++.+. +..+++++...-... + .| ..+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45556668999999999999999886543 677788776543222 0 00 01111111112234
Q ss_pred hCCCeEEEEeCcchhhh
Q 009263 116 VNKPSVIFIDEIDALAT 132 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~ 132 (539)
...+++|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999998875
No 329
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.49 E-value=0.00066 Score=63.09 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=46.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEEeCchhh--------------------HHH-----h--hhhhHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFV--------------------EVL-----V--GVGSAR 106 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~~~~~~~--------------------~~~-----~--g~~~~~ 106 (539)
+.++..+.|.||+|+|||+|++.+++.... --+.+++.... ... . -.+.++
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 456667999999999999999999986521 11222221110 000 0 011233
Q ss_pred HHHHHHHHHhCCCeEEEEeCcch
Q 009263 107 IRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 107 ~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
.+-.+..|....|.++++||.-.
T Consensus 105 qrv~laral~~~p~~lllDEP~~ 127 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTV 127 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc
Confidence 45566777778999999999865
No 330
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00046 Score=64.06 Aligned_cols=23 Identities=48% Similarity=0.722 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhcC
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~ 84 (539)
++|+|+||+|||++|+.+|+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999883
No 331
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.48 E-value=7.7e-05 Score=69.36 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=36.9
Q ss_pred ccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---EEEEeCchh
Q 009263 28 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEF 95 (539)
Q Consensus 28 v~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~---~~~~~~~~~ 95 (539)
++|.++..++|...+. ... ...++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888777776654 111 2345789999999999999999998766433 677766655
No 332
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.48 E-value=0.0013 Score=57.22 Aligned_cols=23 Identities=48% Similarity=0.530 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
+++++||+|+|||+++-.++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999998887766
No 333
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.47 E-value=0.00073 Score=62.23 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=46.0
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH-Hh----------------hhhhHHHHHHHHHHHhCCCeEEEE
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-LV----------------GVGSARIRDLFKRAKVNKPSVIFI 124 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~-~~----------------g~~~~~~~~~f~~a~~~~p~Il~i 124 (539)
+|+.|++|+|||++|..++...+.+++++....-.+. +. .+....+.+.+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 5899999999999999999887778877754432211 00 01112233333221 14669999
Q ss_pred eCcchhhhhh
Q 009263 125 DEIDALATRR 134 (539)
Q Consensus 125 DEiD~l~~~~ 134 (539)
|-+..+....
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9998887654
No 334
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.47 E-value=0.00024 Score=76.77 Aligned_cols=27 Identities=37% Similarity=0.743 Sum_probs=24.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~ 81 (539)
.++++..+++.||+|||||+|.|++|+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 456777799999999999999999998
No 335
>PRK06762 hypothetical protein; Provisional
Probab=97.47 E-value=0.00042 Score=63.52 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=32.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
|.-++|+|+||+|||++|+.+++.++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 4568999999999999999999999766777777666543
No 336
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.47 E-value=6.7e-05 Score=69.06 Aligned_cols=27 Identities=41% Similarity=0.854 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc---CCCE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA---GVPF 87 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~---~~~~ 87 (539)
.++|+|+||+||||+++.+...+ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 47999999999999999999887 5554
No 337
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.47 E-value=0.0012 Score=65.37 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
|+.++..++++||||||||+++..++.+. +-++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 45666679999999999999999986643 6677777654
No 338
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00032 Score=69.00 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=21.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~ 82 (539)
.+.-+-|.||+|+||||+.|.||+-
T Consensus 27 ~Ge~vaLlGpSGaGKsTlLRiIAGL 51 (345)
T COG1118 27 SGELVALLGPSGAGKSTLLRIIAGL 51 (345)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCc
Confidence 4445889999999999999999983
No 339
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.46 E-value=0.00022 Score=73.62 Aligned_cols=71 Identities=24% Similarity=0.413 Sum_probs=46.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCC----CEEEEe-CchhhH---------HHhhhhhHHHHHHHHHHHhCCCeEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGV----PFYQMA-GSEFVE---------VLVGVGSARIRDLFKRAKVNKPSVIF 123 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~----~~~~~~-~~~~~~---------~~~g~~~~~~~~~f~~a~~~~p~Il~ 123 (539)
+...++++||+|+||||+++++.+.+.. .++.+. ..++.. .-.+.........++.+....|++|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 3456899999999999999999987642 233331 112110 01122222356667777889999999
Q ss_pred EeCcc
Q 009263 124 IDEID 128 (539)
Q Consensus 124 iDEiD 128 (539)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99994
No 340
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.45 E-value=0.00011 Score=73.24 Aligned_cols=102 Identities=25% Similarity=0.339 Sum_probs=63.7
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---EEEEe-Cc
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMA-GS 93 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~---~~~~~-~~ 93 (539)
......+++++.-.....+.+.+++...- +..+++++.||+|+|||++++++....... ++.+. ..
T Consensus 96 ~~~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 96 FSSKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp ETSS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred cccccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 34566788998777666666666655321 234579999999999999999999987433 33332 11
Q ss_pred hhhHH------Hh-hhhhHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 94 EFVEV------LV-GVGSARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 94 ~~~~~------~~-g~~~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
++.-. +. ........+++..+.+..|++|+++|+-.
T Consensus 166 E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 166 ELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 22111 00 11233567788888889999999999954
No 341
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.44 E-value=0.0049 Score=72.07 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=84.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch-------hhHHHhhh-----------h------------hHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE-------FVEVLVGV-----------G------------SARIR 108 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~-------~~~~~~g~-----------~------------~~~~~ 108 (539)
.+-++|+||+|.|||+++...+...+ ++..++... |...+... . ...+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34589999999999999999988776 665554421 11110000 0 00112
Q ss_pred HHHHHHHh-CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCc
Q 009263 109 DLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDP 187 (539)
Q Consensus 109 ~~f~~a~~-~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~ 187 (539)
.++..... ..|.+|+|||++.+.. ......+..|+..+ +.++.+|.++.....++-
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~------------------~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~ 167 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN------------------PEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGI 167 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC------------------hHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCch
Confidence 22332222 5788999999998631 12233444555432 234444335543111211
Q ss_pred -cccCCCccceeeecC----CCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHH
Q 009263 188 -ALLRPGRFDRKIRIR----APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLV 247 (539)
Q Consensus 188 -al~r~gRf~~~i~v~----~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv 247 (539)
.+.-. +..+.+. ..+.+|-.+++...+... + ...++..+...|.| ++.-+..+.
T Consensus 168 ~~l~~~---~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~G-wp~~l~l~~ 226 (903)
T PRK04841 168 ANLRVR---DQLLEIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEG-WATALQLIA 226 (903)
T ss_pred HhHHhc---CcceecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCC-hHHHHHHHH
Confidence 11111 1233344 568888888887654422 1 22346778888888 455555443
No 342
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.44 E-value=0.001 Score=63.85 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~ 81 (539)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 343
>PRK04296 thymidine kinase; Provisional
Probab=97.43 E-value=0.00049 Score=64.77 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=41.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeC--c--hhhHH---Hhhhh-----hHHHHHHHHHH--HhCCCeEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG--S--EFVEV---LVGVG-----SARIRDLFKRA--KVNKPSVIF 123 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~---~~~~~~~~~--~--~~~~~---~~g~~-----~~~~~~~f~~a--~~~~p~Il~ 123 (539)
-.+++||+|+|||+++..++.++ +..++.+.. . ..... ..|.. ......++..+ ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999999888765 556555533 1 10000 01110 01123333333 234567999
Q ss_pred EeCcchh
Q 009263 124 IDEIDAL 130 (539)
Q Consensus 124 iDEiD~l 130 (539)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999764
No 344
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.43 E-value=0.002 Score=59.49 Aligned_cols=72 Identities=15% Similarity=0.297 Sum_probs=45.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH-Hhhh----------------hhHHHHHHHHHHHhCCCeEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-LVGV----------------GSARIRDLFKRAKVNKPSVIF 123 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~-~~g~----------------~~~~~~~~f~~a~~~~p~Il~ 123 (539)
.+++.||||||||++|..++...+.+++++........ +... ....+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 47999999999999999999998888777765432211 1000 000122333221 23456899
Q ss_pred EeCcchhhhh
Q 009263 124 IDEIDALATR 133 (539)
Q Consensus 124 iDEiD~l~~~ 133 (539)
||-+..+...
T Consensus 82 ID~Lt~~~~n 91 (170)
T PRK05800 82 VDCLTTWVTN 91 (170)
T ss_pred ehhHHHHHHH
Confidence 9999888654
No 345
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.43 E-value=0.00062 Score=62.56 Aligned_cols=74 Identities=31% Similarity=0.489 Sum_probs=46.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCC-----------CEEEEeCc-hhh-----HHHh------hhhhHHHHHHHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------PFYQMAGS-EFV-----EVLV------GVGSARIRDLFK 112 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~-----------~~~~~~~~-~~~-----~~~~------g~~~~~~~~~f~ 112 (539)
+.++..+.|.||+|+|||+|++.+++.... .+-++... .+. +... -.+..+.+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 456667999999999999999999987521 11111111 011 1100 112234455667
Q ss_pred HHHhCCCeEEEEeCcch
Q 009263 113 RAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 113 ~a~~~~p~Il~iDEiD~ 129 (539)
.|....|.++++||...
T Consensus 104 ral~~~p~~lllDEPt~ 120 (166)
T cd03223 104 RLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHcCCCEEEEECCcc
Confidence 77778999999999865
No 346
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.41 E-value=0.0022 Score=61.99 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 95 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~ 95 (539)
|+.++..+++.|+||+|||+++..++.+. +.++++++..+-
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 55666779999999999999999987543 778888776543
No 347
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.40 E-value=0.00062 Score=63.01 Aligned_cols=74 Identities=26% Similarity=0.444 Sum_probs=46.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCC--EEEEeCchh--------hHH----------H---h----hhhhHHHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSEF--------VEV----------L---V----GVGSARIR 108 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~~~~~~~--------~~~----------~---~----g~~~~~~~ 108 (539)
+.++..+.|.||+|+|||+|.+.+++..... -+.+++.++ ... + + -.+..+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 3455568999999999999999999865210 111211110 000 0 0 11233445
Q ss_pred HHHHHHHhCCCeEEEEeCcch
Q 009263 109 DLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 109 ~~f~~a~~~~p~Il~iDEiD~ 129 (539)
-.+..|....|.++++||.-.
T Consensus 105 v~la~al~~~p~~lllDEPt~ 125 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNS 125 (173)
T ss_pred HHHHHHHhcCCCEEEEECCcc
Confidence 567777788999999999754
No 348
>PRK04328 hypothetical protein; Provisional
Probab=97.39 E-value=0.0023 Score=62.95 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=30.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh---cCCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~---~~~~~~~~~~~ 93 (539)
|+.++..+|++||||||||+|+..++.+ .+-+.++++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 4666777999999999999999987653 36677777653
No 349
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.39 E-value=0.0022 Score=62.15 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=30.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
|+..+..+++.||||+|||+|+..++.+. +.++++++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56677789999999999999999876532 5567777653
No 350
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00062 Score=69.62 Aligned_cols=154 Identities=17% Similarity=0.299 Sum_probs=90.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc--CCCEEEEeCchhhHHHhhh--------------hhHHHHHHHHHHHhCCC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA--GVPFYQMAGSEFVEVLVGV--------------GSARIRDLFKRAKVNKP 119 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~--~~~~~~~~~~~~~~~~~g~--------------~~~~~~~~f~~a~~~~p 119 (539)
+-++.-+||-|.||.|||||.-.++..+ ..+++|+++.+-...+-.. .+.++..+++......|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4555568899999999999998888766 3389999998765542211 33446778888888999
Q ss_pred eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCc--EEEEEecCCCCcC-CccccCCCccc
Q 009263 120 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG--VIFLAATNRRDLL-DPALLRPGRFD 196 (539)
Q Consensus 120 ~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~--vivIaatn~~~~l-d~al~r~gRf~ 196 (539)
++++||-|+.+....-.+..+.. .+ ....-++|... ....+ +++++=-.....+ -|.++- +-.|
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsV-------sQ-VRe~t~~L~~~----AK~~~i~~fiVGHVTKeG~IAGPrvLE-HmVD 236 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSV-------SQ-VREVAAELMRL----AKTKNIAIFIVGHVTKEGAIAGPRVLE-HMVD 236 (456)
T ss_pred CEEEEeccceeecccccCCCCcH-------HH-HHHHHHHHHHH----HHHcCCeEEEEEEEcccccccCchhee-eeee
Confidence 99999999998866532222211 11 11222222222 22233 3333322222222 344443 3566
Q ss_pred eeeecCCCCHHHHHHHHHHHhccCCCC
Q 009263 197 RKIRIRAPNAKGRTEILKIHASKVKMS 223 (539)
Q Consensus 197 ~~i~v~~P~~~er~~il~~~l~~~~~~ 223 (539)
.+++|.- |.....+|++.+-+.....
T Consensus 237 tVlyFEG-d~~~~~RiLR~vKNRFG~t 262 (456)
T COG1066 237 TVLYFEG-DRHSRYRILRSVKNRFGAT 262 (456)
T ss_pred EEEEEec-cCCCceeeeehhcccCCcc
Confidence 7777753 3345566776665554433
No 351
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0026 Score=65.68 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=46.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh----HHHh------------hhhhHHHHHHHHHHHh-C
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV----EVLV------------GVGSARIRDLFKRAKV-N 117 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~----~~~~------------g~~~~~~~~~f~~a~~-~ 117 (539)
.|+.++|.||+|+|||+++..||..+ +..+..+++..+. +.+. ......+...+..+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 35679999999999999999999866 4456556554432 1111 1123344455555443 2
Q ss_pred CCeEEEEeCcch
Q 009263 118 KPSVIFIDEIDA 129 (539)
Q Consensus 118 ~p~Il~iDEiD~ 129 (539)
..++||||-..+
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 457999997755
No 352
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00032 Score=64.88 Aligned_cols=74 Identities=26% Similarity=0.314 Sum_probs=45.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEEeCc--------------------hhh------HHHhhhhhHHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGS--------------------EFV------EVLVGVGSARI 107 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~~~~--------------------~~~------~~~~g~~~~~~ 107 (539)
+.++..+.|.||+|+|||+|++.+++.... --+.+++. .+. +...-.+.++.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 345566999999999999999999986411 00111110 000 00001123344
Q ss_pred HHHHHHHHhCCCeEEEEeCcch
Q 009263 108 RDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 108 ~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
+-.+..|....|.|+++||...
T Consensus 103 rv~laral~~~p~illlDEPt~ 124 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTS 124 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCcc
Confidence 5567777788999999999865
No 353
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.37 E-value=0.0016 Score=61.56 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=42.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-------H---hhh----------hhHHHHHHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-------L---VGV----------GSARIRDLFKRAK 115 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-------~---~g~----------~~~~~~~~f~~a~ 115 (539)
|+-++|+||+|+|||+.+-.+|..+ +..+..++...+.-. | .+. .....++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5678999999999999988888755 455555544433211 1 110 1122345555555
Q ss_pred hCCCeEEEEeCcch
Q 009263 116 VNKPSVIFIDEIDA 129 (539)
Q Consensus 116 ~~~p~Il~iDEiD~ 129 (539)
.....+|+||=...
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 55667999987654
No 354
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.36 E-value=0.00066 Score=64.95 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=21.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~ 81 (539)
+..+.-+.|.||+|||||||...++.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444589999999999999999987
No 355
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00017 Score=63.33 Aligned_cols=33 Identities=27% Similarity=0.669 Sum_probs=29.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..+||++|-||||||+++..+|...+.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 347999999999999999999999998887663
No 356
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.35 E-value=0.0013 Score=61.52 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 009263 62 VLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~ 81 (539)
++|+||.|+|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 357
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.00046 Score=70.00 Aligned_cols=25 Identities=44% Similarity=0.731 Sum_probs=21.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~ 82 (539)
.+.-+.|.||+||||||+.+.||+-
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344889999999999999999983
No 358
>PRK00625 shikimate kinase; Provisional
Probab=97.33 E-value=0.00022 Score=66.03 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=28.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
.|+|+|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988764
No 359
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0044 Score=64.66 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=28.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCchh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEF 95 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~~ 95 (539)
.+..++|.||+|+|||+++..+|... +..+..+++..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 34568899999999999999999754 445555655543
No 360
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.33 E-value=0.0012 Score=64.92 Aligned_cols=72 Identities=25% Similarity=0.466 Sum_probs=47.4
Q ss_pred CCce-EEEECCCCCcHHHHHHHHHHhcCCC----EEEEe-Cchhh---------HHHhhhhhHHHHHHHHHHHhCCCeEE
Q 009263 58 PPHG-VLLEGPPGCGKTLVAKAIAGEAGVP----FYQMA-GSEFV---------EVLVGVGSARIRDLFKRAKVNKPSVI 122 (539)
Q Consensus 58 ~~~g-iLL~GppGtGKT~la~alA~~~~~~----~~~~~-~~~~~---------~~~~g~~~~~~~~~f~~a~~~~p~Il 122 (539)
.++| ||++||+|||||+..-++-+..+.. .+.+- .-+|. ..-+|.........++.|.+..|+||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3455 7888999999999999998887532 33331 11221 11233333444556677788899999
Q ss_pred EEeCcch
Q 009263 123 FIDEIDA 129 (539)
Q Consensus 123 ~iDEiD~ 129 (539)
++-|+-.
T Consensus 203 lvGEmRD 209 (353)
T COG2805 203 LVGEMRD 209 (353)
T ss_pred EEecccc
Confidence 9999844
No 361
>PRK13947 shikimate kinase; Provisional
Probab=97.32 E-value=0.00022 Score=65.70 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=28.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999987653
No 362
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.32 E-value=0.001 Score=68.94 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=46.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC-----CCEEEEeC-chhh-----------HHHhhhhhHHHHHHHHHHHhCCCeEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMAG-SEFV-----------EVLVGVGSARIRDLFKRAKVNKPSVI 122 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~-----~~~~~~~~-~~~~-----------~~~~g~~~~~~~~~f~~a~~~~p~Il 122 (539)
..+|++||+|+|||++++++.+... ..++.+.- .++. ...+|.........+..+.+..|++|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3589999999999999999988762 33444421 1211 01112222235566777888999999
Q ss_pred EEeCcch
Q 009263 123 FIDEIDA 129 (539)
Q Consensus 123 ~iDEiD~ 129 (539)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999953
No 363
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.00016 Score=70.26 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc
Q 009263 105 ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL 184 (539)
Q Consensus 105 ~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ 184 (539)
+..|.+++.|....|.++++||--.= .+......+.++|.++. .. +..|+..|.+...
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~g------------------vD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~ 201 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTG------------------VDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCccc------------------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHH
Confidence 34566788888899999999996331 23334556777777764 33 6677778876664
Q ss_pred C
Q 009263 185 L 185 (539)
Q Consensus 185 l 185 (539)
+
T Consensus 202 v 202 (254)
T COG1121 202 V 202 (254)
T ss_pred h
Confidence 3
No 364
>PRK03839 putative kinase; Provisional
Probab=97.32 E-value=0.0002 Score=66.76 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=27.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3799999999999999999999999887653
No 365
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00067 Score=61.93 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=29.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..++|+|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999998653
No 366
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.32 E-value=0.00053 Score=63.89 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556679999999999999999999865
No 367
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.32 E-value=0.00024 Score=65.93 Aligned_cols=39 Identities=23% Similarity=0.475 Sum_probs=32.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
++-++|.|+||+|||++|+.++..++.+++.++...+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 346899999999999999999999988887776665544
No 368
>PRK13948 shikimate kinase; Provisional
Probab=97.32 E-value=0.00057 Score=63.73 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=34.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhh
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 101 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g 101 (539)
+++..++|.|.+|+|||++++.+|+.++.+|+.. ..+.....|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~--D~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDT--DRYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEC--CHHHHHHHh
Confidence 4567899999999999999999999999999854 444444433
No 369
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.32 E-value=0.00085 Score=61.67 Aligned_cols=34 Identities=38% Similarity=0.710 Sum_probs=26.2
Q ss_pred hhhhcCCCCCce--EEEECCCCCcHHHHHHHHHHhc
Q 009263 50 LFDKMGIKPPHG--VLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 50 ~~~~~g~~~~~g--iLL~GppGtGKT~la~alA~~~ 83 (539)
.++...+..++| ++|+||+|.|||+|.|.|..+.
T Consensus 17 aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 444444444454 8899999999999999998854
No 370
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.00084 Score=73.19 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=23.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~ 81 (539)
.++|+..+-|+||+|+|||++|..+-+
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 356777899999999999999999977
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.31 E-value=0.002 Score=69.60 Aligned_cols=78 Identities=26% Similarity=0.219 Sum_probs=55.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhh----------------------------h
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV----------------------------G 103 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~----------------------------~ 103 (539)
|+.++..+|+.||||+|||+|+-.++.+. +-+.++++..+-.+.+... .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56666779999999999999999998755 6678888766544331110 0
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCcchhhh
Q 009263 104 SARIRDLFKRAKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 104 ~~~~~~~f~~a~~~~p~Il~iDEiD~l~~ 132 (539)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 23344555566667899999999988753
No 372
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.31 E-value=0.00066 Score=71.46 Aligned_cols=98 Identities=22% Similarity=0.295 Sum_probs=62.5
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCce-EEEECCCCCcHHHHHHHHHHhcCCCEE-EEeCchh
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHG-VLLEGPPGCGKTLVAKAIAGEAGVPFY-QMAGSEF 95 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~g-iLL~GppGtGKT~la~alA~~~~~~~~-~~~~~~~ 95 (539)
......+|+++.......+.+.+++. .|.| +|++||+|+|||++.-++.++++.+.. .++..+-
T Consensus 230 ~~~~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDP 295 (500)
T COG2804 230 KDQVILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDP 295 (500)
T ss_pred cccccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCC
Confidence 33456778888877777777766542 3445 778899999999999999998865543 2222221
Q ss_pred hHH--------Hhh-hhhHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 96 VEV--------LVG-VGSARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 96 ~~~--------~~g-~~~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
++. .+. ...-.....++...++.|+||++.||-.
T Consensus 296 VE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 296 VEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred eeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 111 000 0111233455566778999999999954
No 373
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.29 E-value=0.0012 Score=62.80 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~ 81 (539)
..+.-++|+||.|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3445699999999999999999983
No 374
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.29 E-value=0.00026 Score=71.43 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=47.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC-----CCEEEEeC-chhh-------HHHhhhhhHHHHHHHHHHHhCCCeEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMAG-SEFV-------EVLVGVGSARIRDLFKRAKVNKPSVIFI 124 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~-----~~~~~~~~-~~~~-------~~~~g~~~~~~~~~f~~a~~~~p~Il~i 124 (539)
..++++++||+|+|||++++++++... ..++.+.. .++. ..........+..++..+.+..|+.|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 345899999999999999999998762 33333321 1111 0001111225677888888999999999
Q ss_pred eCcc
Q 009263 125 DEID 128 (539)
Q Consensus 125 DEiD 128 (539)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9984
No 375
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.29 E-value=0.018 Score=58.52 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=65.1
Q ss_pred CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC-CCcEEE--EEecCC---CC--cCCccc
Q 009263 118 KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIF--LAATNR---RD--LLDPAL 189 (539)
Q Consensus 118 ~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~viv--Iaatn~---~~--~ld~al 189 (539)
-|.++-||++..+.... ...+.. ........-.....|+..+.+-.. ..+.+| +++|.. +. .++.++
T Consensus 156 ~PVL~avD~~n~l~~~S--~Y~~~~---~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L 230 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPS--AYRDPD---FKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVAL 230 (309)
T ss_pred CceEEEehhhHHhhCCc--cccCCC---CccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhh
Confidence 47788999999998762 111110 111233334455555555433222 334443 555432 22 345455
Q ss_pred cCCC------ccc-------------eeeecCCCCHHHHHHHHHHHhccCCCCCCCC----HHHHHhhCCCCCHHHHHH
Q 009263 190 LRPG------RFD-------------RKIRIRAPNAKGRTEILKIHASKVKMSDSVD----LSSYAKNLPGWTGARLAQ 245 (539)
Q Consensus 190 ~r~g------Rf~-------------~~i~v~~P~~~er~~il~~~l~~~~~~~~~~----~~~la~~t~g~s~~dl~~ 245 (539)
.... -|. ..|+++..+.+|-..++..+....-+....+ .+.+.-.+ +.+++++..
T Consensus 231 ~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~GNp~el~k 308 (309)
T PF10236_consen 231 GGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NGNPRELEK 308 (309)
T ss_pred ccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CCCHHHhcc
Confidence 4311 111 1678999999999999999987654443211 33333333 447777653
No 376
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.28 E-value=0.0013 Score=68.49 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=38.3
Q ss_pred cccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEE
Q 009263 27 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 88 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~ 88 (539)
.|.|.+++|+.+.=++---.....-+.+..+..-++||.|.|||.|+.|.|-+-.-.-+.++
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVY 393 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVY 393 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEE
Confidence 46788877777654332111111112222344557999999999999999988776544433
No 377
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.27 E-value=0.0014 Score=67.70 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.+.-++|+||||+|||++++.+++...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 334499999999999999999999753
No 378
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.27 E-value=0.0033 Score=66.57 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=31.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 95 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~ 95 (539)
..|..++++|++|+|||+++..+|..+ +..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 357789999999999999999998866 556666666544
No 379
>PRK10536 hypothetical protein; Provisional
Probab=97.25 E-value=0.0013 Score=64.01 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
..+..|.+.......+...+ .+ ..-+++.||+|||||+||.+++.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al---~~-----------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAI---ES-----------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHH---hc-----------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 44455666665555544433 21 126899999999999999999885
No 380
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.24 E-value=0.00029 Score=63.48 Aligned_cols=31 Identities=35% Similarity=0.646 Sum_probs=27.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
+++|+|+||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3799999999999999999999999877543
No 381
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0022 Score=60.38 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=23.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
+.++..+.|.||+|+|||+|++.+++.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 445667899999999999999999974
No 382
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.23 E-value=0.0018 Score=61.40 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.5
Q ss_pred ceEEEECCCCCcHHHHHHHHH
Q 009263 60 HGVLLEGPPGCGKTLVAKAIA 80 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA 80 (539)
+.++|+||+|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 383
>PHA02774 E1; Provisional
Probab=97.23 E-value=0.0014 Score=70.41 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEE-EeC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ-MAG 92 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~-~~~ 92 (539)
.++++|+||||||||+++-+|++.++..++. ++.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3589999999999999999999998655543 553
No 384
>PRK13949 shikimate kinase; Provisional
Probab=97.22 E-value=0.00031 Score=64.84 Aligned_cols=31 Identities=39% Similarity=0.628 Sum_probs=28.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
.|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999988765
No 385
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.22 E-value=0.0005 Score=64.44 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=46.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC--CCEEEEeCc-hhhH---H----------HhhhhhHHHHHHHHHHHhCCCe
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGS-EFVE---V----------LVGVGSARIRDLFKRAKVNKPS 120 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~~~~~-~~~~---~----------~~g~~~~~~~~~f~~a~~~~p~ 120 (539)
+....++|.||+|+|||++++++++... ...+.+... ++.. . ..+.......+.+..+.+..|+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3456799999999999999999998763 122222111 1100 0 0011123456677777888999
Q ss_pred EEEEeCcc
Q 009263 121 VIFIDEID 128 (539)
Q Consensus 121 Il~iDEiD 128 (539)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999994
No 386
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.00032 Score=65.29 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=23.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455568899999999999999999854
No 387
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.21 E-value=0.0016 Score=61.39 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|.+.+++..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566679999999999999999999976
No 388
>PHA02624 large T antigen; Provisional
Probab=97.21 E-value=0.00072 Score=72.95 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=32.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
|++..+.++|+||||||||+|+.+|++.++...+.++++.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 3444558999999999999999999999976677777543
No 389
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.21 E-value=0.0018 Score=65.73 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=63.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCch-hh-HHH------hhh---------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE-FV-EVL------VGV--------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~-~~-~~~------~g~--------------- 102 (539)
|+....-+.|+||||+|||.|+..+|-.. +..+++++... |. +.. .+.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 45555668899999999999999887432 45677777544 11 100 000
Q ss_pred -h---hHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 103 -G---SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 103 -~---~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
. ...+..+........+.+|+||-|-.+....-.+.+ ...++...+..++..|..+....++.||.+
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g---------~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRG---------ELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCcc---------chHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 0 011112222223456889999999988654211100 111223345555555544444556666655
Q ss_pred c
Q 009263 179 T 179 (539)
Q Consensus 179 t 179 (539)
.
T Consensus 243 N 243 (313)
T TIGR02238 243 N 243 (313)
T ss_pred C
Confidence 3
No 390
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.21 E-value=0.00045 Score=70.69 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=48.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEE-eCchhhH-H-------H-----hhhhhHHHHHHHHHHHhCCCe
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQM-AGSEFVE-V-------L-----VGVGSARIRDLFKRAKVNKPS 120 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~-~~~~~~~-~-------~-----~g~~~~~~~~~f~~a~~~~p~ 120 (539)
+..++++++|++|+|||++++++...... .++.+ +..++.- . . .+...-...+++..+.+..|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 34568999999999999999999987742 23322 1111110 0 0 111222457788889999999
Q ss_pred EEEEeCcch
Q 009263 121 VIFIDEIDA 129 (539)
Q Consensus 121 Il~iDEiD~ 129 (539)
.|++.|+-.
T Consensus 238 ~IivGEiR~ 246 (332)
T PRK13900 238 RIIVGELRG 246 (332)
T ss_pred eEEEEecCC
Confidence 999999853
No 391
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.21 E-value=0.0031 Score=61.99 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=28.8
Q ss_pred EEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 96 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~ 96 (539)
|+|+|+||+|||++|+.++..+ +.+++.++...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 6899999999999999999887 5667777665443
No 392
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.20 E-value=0.0006 Score=66.35 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=53.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHH------hcCCCEEEEeCchhhHHHh-hhhhHHHHHHHHHH--------HhCCC
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAG------EAGVPFYQMAGSEFVEVLV-GVGSARIRDLFKRA--------KVNKP 119 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~------~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~f~~a--------~~~~p 119 (539)
.++....+||.||+|.||++||+.+.. .+..+|+.++|..+..... ......++..|.-| +....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 345556799999999999999999964 4578999999987754310 00011122333222 22344
Q ss_pred eEEEEeCcchhhhhh
Q 009263 120 SVIFIDEIDALATRR 134 (539)
Q Consensus 120 ~Il~iDEiD~l~~~~ 134 (539)
.+||+|||..|+...
T Consensus 284 gmlfldeigelgade 298 (531)
T COG4650 284 GMLFLDEIGELGADE 298 (531)
T ss_pred ceEehHhhhhcCccH
Confidence 599999999987654
No 393
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0018 Score=60.72 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=22.0
Q ss_pred hcCCCCCc--eEEEECCCCCcHHHHHHHHHH
Q 009263 53 KMGIKPPH--GVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 53 ~~g~~~~~--giLL~GppGtGKT~la~alA~ 81 (539)
...+..|. -.-|.||+||||||+.|++-+
T Consensus 25 ~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 25 DINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 33344443 467999999999999999976
No 394
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.19 E-value=0.00032 Score=65.35 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=27.8
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
++++||||||||++++.+|...+.+ .++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHH
Confidence 6899999999999999999999864 455555544
No 395
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.19 E-value=0.0014 Score=61.25 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|.+.+++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556678999999999999999999864
No 396
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.18 E-value=0.0012 Score=63.01 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=26.1
Q ss_pred hhhhcCCCCCce--EEEECCCCCcHHHHHHHHHHhc
Q 009263 50 LFDKMGIKPPHG--VLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 50 ~~~~~g~~~~~g--iLL~GppGtGKT~la~alA~~~ 83 (539)
.++.+.++.++| +-+.||+|||||+|.|.+.+.+
T Consensus 23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 344455555555 7789999999999999999844
No 397
>PRK06217 hypothetical protein; Validated
Probab=97.18 E-value=0.00037 Score=65.16 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=28.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
.|+|.|+||+|||+++++|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999877654
No 398
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.17 E-value=0.0039 Score=58.83 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=24.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566679999999999999999999864
No 399
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.16 E-value=0.001 Score=76.77 Aligned_cols=178 Identities=18% Similarity=0.172 Sum_probs=98.4
Q ss_pred CCCCceEEEECCCCCcHHHHH-HHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhC---------CC------
Q 009263 56 IKPPHGVLLEGPPGCGKTLVA-KAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN---------KP------ 119 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la-~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~---------~p------ 119 (539)
+...++++++||||+|||++. -++-++.-..+++++.+.-.. +...+.. ++.-... -|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~-Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSV-LERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHH-HHhhceeeccCCeEEEccCcchhh
Confidence 455679999999999999964 566667777777776543211 1111111 1111000 11
Q ss_pred eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCCcCC-----
Q 009263 120 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DTGKGVIFLAATNRRDLLD----- 186 (539)
Q Consensus 120 ~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--------~~~~~vivIaatn~~~~ld----- 186 (539)
-|||.|||. +...+.= +.+ .. .-.+.+++. -.|| ..-.++++.++||++.+..
T Consensus 1565 lVLFcDeIn-Lp~~~~y--~~~-~v---------I~FlR~l~e-~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~ 1630 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEY--YPP-TV---------IVFLRPLVE-RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYY 1630 (3164)
T ss_pred eEEEeeccC-Ccccccc--CCC-ce---------EEeeHHHHH-hcccccchhhhHhhhcceEEEccCCCCCCcccCccH
Confidence 299999998 4322110 000 00 000111111 1111 2335799999999877533
Q ss_pred ccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-C------------CC--------HHHHHhhCCCCCHHHHHH
Q 009263 187 PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-S------------VD--------LSSYAKNLPGWTGARLAQ 245 (539)
Q Consensus 187 ~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~------------~~--------~~~la~~t~g~s~~dl~~ 245 (539)
..++| | ...+++..|.......|...++...-+.. . +. ..-..+..-||+|++|..
T Consensus 1631 eRf~r--~-~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR 1707 (3164)
T COG5245 1631 ERFIR--K-PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTR 1707 (3164)
T ss_pred HHHhc--C-ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHH
Confidence 34443 2 34678889999999999887775432211 1 00 111122235799999999
Q ss_pred HHHHHHHHHHH
Q 009263 246 LVQEAALVAVR 256 (539)
Q Consensus 246 lv~~A~~~A~~ 256 (539)
.++....+|-.
T Consensus 1708 ~lr~i~~yaeT 1718 (3164)
T COG5245 1708 SLRAIFGYAET 1718 (3164)
T ss_pred HHHHHHhHHhc
Confidence 98866665543
No 400
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.16 E-value=0.0052 Score=59.58 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEEeCchhhHH---H-----hhh---------hhHH----HHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFVEV---L-----VGV---------GSAR----IRDLFKR 113 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~~~~~~~~~---~-----~g~---------~~~~----~~~~f~~ 113 (539)
..|-.+++.|++|||||++++.+...+.. ..+.+-....... + ... ...+ +.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34557899999999999999999876633 2222211111110 0 000 0001 1111111
Q ss_pred HHh---CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcccc
Q 009263 114 AKV---NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALL 190 (539)
Q Consensus 114 a~~---~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~ 190 (539)
... ..+++|++|++.. + ......+.+++.. ...-++.+|.++.....+++.++
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~-----------------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR 146 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K-----------------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIR 146 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c-----------------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHh
Confidence 111 2367999999732 0 0112334455432 34456888889998889999887
Q ss_pred CCCccceeeecCCCCHHHHHHHHHHH
Q 009263 191 RPGRFDRKIRIRAPNAKGRTEILKIH 216 (539)
Q Consensus 191 r~gRf~~~i~v~~P~~~er~~il~~~ 216 (539)
. -.+..+-++ .+......|++.+
T Consensus 147 ~--n~~y~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 147 S--NIDYFIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred h--cceEEEEec-CcHHHHHHHHHhc
Confidence 6 566666564 3555555554443
No 401
>PRK14532 adenylate kinase; Provisional
Probab=97.15 E-value=0.00039 Score=65.20 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=29.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
.++|.||||+|||++++.+|...+.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987654 55555544
No 402
>PRK13946 shikimate kinase; Provisional
Probab=97.15 E-value=0.0012 Score=61.66 Aligned_cols=34 Identities=32% Similarity=0.524 Sum_probs=30.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
.++.|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3467999999999999999999999999988654
No 403
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.003 Score=58.06 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.+.||.|+|||+|.|.+|+-+
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHccc
Confidence 4566679999999999999999999855
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.15 E-value=0.0063 Score=61.94 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=29.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
..+.-++|.||+|+||||++..+|..+ +..+..+++.-
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 346678999999999999999999876 44555555543
No 405
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.14 E-value=0.0019 Score=61.55 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456678999999999999999999854
No 406
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.14 E-value=0.0014 Score=70.58 Aligned_cols=95 Identities=21% Similarity=0.342 Sum_probs=57.3
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCce-EEEECCCCCcHHHHHHHHHHhcC---CCEEEEeC-chh
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHG-VLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAG-SEF 95 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~g-iLL~GppGtGKT~la~alA~~~~---~~~~~~~~-~~~ 95 (539)
...+|+++.-.++..+.+..++. .+.| ++++||+|+|||++..++.+++. ..++++.. .++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34567776555555555554432 2334 78999999999999999888764 33444421 111
Q ss_pred hHH-----Hhh-hhhHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 96 VEV-----LVG-VGSARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 96 ~~~-----~~g-~~~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
.-. .+. .........+..+.++.|+|+++.|+-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 110 011 0112344566677789999999999954
No 407
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.14 E-value=0.0018 Score=58.34 Aligned_cols=36 Identities=31% Similarity=0.629 Sum_probs=30.0
Q ss_pred EEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhH
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 97 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~ 97 (539)
++|+|+||+|||++++.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999988 66777777665543
No 408
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.0024 Score=60.98 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556668999999999999999999854
No 409
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.13 E-value=0.011 Score=55.80 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPF 87 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~ 87 (539)
+.-+++.|+||+|||++++.+|.+++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999998765
No 410
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.13 E-value=0.00058 Score=69.36 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=48.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEEe-CchhhH---H----H-----hhhhhHHHHHHHHHHHhCCCe
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMA-GSEFVE---V----L-----VGVGSARIRDLFKRAKVNKPS 120 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~~-~~~~~~---~----~-----~g~~~~~~~~~f~~a~~~~p~ 120 (539)
++...++++.||+|+|||++++++++.... ..+.+. ..++.- . . .+...-.+.+++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 456678999999999999999999987632 222221 111100 0 0 011123456778888889999
Q ss_pred EEEEeCcc
Q 009263 121 VIFIDEID 128 (539)
Q Consensus 121 Il~iDEiD 128 (539)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999995
No 411
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.13 E-value=0.0028 Score=64.45 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=31.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~ 94 (539)
|+..+.-++++||||+|||+++..+|-.+ +..+++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 35555668899999999999999998763 23678887655
No 412
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.13 E-value=0.0028 Score=65.00 Aligned_cols=116 Identities=17% Similarity=0.120 Sum_probs=62.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCch-hhH-HH------hhhh--------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE-FVE-VL------VGVG-------------- 103 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~-~~~-~~------~g~~-------------- 103 (539)
|+....-..|+||||||||.|+..+|-.. +..+++++... |.. .. .+..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45555558899999999999999987433 24667776543 111 00 0000
Q ss_pred -h----HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 104 -S----ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 104 -~----~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
. ..+..+........+++|+||-|-.+....-.+.+ ...+....+..++..|..+-...++.||.+
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg---------~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRG---------ELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCcc---------chHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 0 11111212223456889999999987654211100 112233445565555544444456666655
Q ss_pred c
Q 009263 179 T 179 (539)
Q Consensus 179 t 179 (539)
.
T Consensus 273 N 273 (344)
T PLN03187 273 N 273 (344)
T ss_pred e
Confidence 3
No 413
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.0017 Score=62.17 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
+.++..+=|.|++|||||||++++++-
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 345556889999999999999999983
No 414
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.12 E-value=0.0052 Score=66.48 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=32.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh----cCCCEEEEeCchh
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE----AGVPFYQMAGSEF 95 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~----~~~~~~~~~~~~~ 95 (539)
|+.++..+|+.||||||||+|+..++.+ .+-+.++++..+-
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5677788999999999999999998543 2678888876543
No 415
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.11 E-value=0.0023 Score=65.28 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=31.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~ 94 (539)
|+..+.-++|+||||+|||+++..+|-.. +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 45566668899999999999999998653 33677777654
No 416
>PRK13764 ATPase; Provisional
Probab=97.11 E-value=0.00062 Score=74.39 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=43.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC---CCEEEE-eCchhh-----HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQM-AGSEFV-----EVLVGVGSARIRDLFKRAKVNKPSVIFIDEID 128 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~---~~~~~~-~~~~~~-----~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD 128 (539)
...++|++||||+||||++++++..+. ..+.++ +..++. ..+.. ...........+....|+++++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 356899999999999999999998774 223232 111211 11100 00112233333456789999999985
Q ss_pred h
Q 009263 129 A 129 (539)
Q Consensus 129 ~ 129 (539)
.
T Consensus 335 d 335 (602)
T PRK13764 335 K 335 (602)
T ss_pred C
Confidence 4
No 417
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.10 E-value=0.00058 Score=66.11 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=30.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
.|..++|.||||+||||+|+.+|..++.+++.+ .+++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdll 41 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNIL 41 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHH
Confidence 345599999999999999999999999877655 4444
No 418
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.10 E-value=0.00047 Score=61.52 Aligned_cols=30 Identities=37% Similarity=0.804 Sum_probs=27.9
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
+.+.|+||||||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988775
No 419
>PLN02200 adenylate kinase family protein
Probab=97.10 E-value=0.00072 Score=65.81 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=32.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
.+.|..+++.||||+|||++++.+|..++.+ .++.+++..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 3455678999999999999999999999865 456666654
No 420
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.10 E-value=0.00061 Score=69.86 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=48.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEEe-CchhhHH--------H----hhhhhHHHHHHHHHHHhCCCe
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMA-GSEFVEV--------L----VGVGSARIRDLFKRAKVNKPS 120 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~~-~~~~~~~--------~----~g~~~~~~~~~f~~a~~~~p~ 120 (539)
.+..+++++.||+|+|||++++++++.... .++.+. ..++.-. + .+...-....++..+.+..|+
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 345678999999999999999999987632 223221 1111100 0 111223456788888889999
Q ss_pred EEEEeCcc
Q 009263 121 VIFIDEID 128 (539)
Q Consensus 121 Il~iDEiD 128 (539)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999984
No 421
>PRK14531 adenylate kinase; Provisional
Probab=97.09 E-value=0.00056 Score=63.96 Aligned_cols=35 Identities=26% Similarity=0.551 Sum_probs=28.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
+.++++||||+|||++++.+|...+.+++. ..++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 358999999999999999999999987654 44443
No 422
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.09 E-value=0.003 Score=63.32 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=30.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc----C-CCEEEEeCchh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA----G-VPFYQMAGSEF 95 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~----~-~~~~~~~~~~~ 95 (539)
.+..++|+||+|+||||++..+|..+ + ..+..++...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45679999999999999999998765 3 56667776654
No 423
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.09 E-value=0.0011 Score=74.28 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=24.2
Q ss_pred hcCCCCCce--EEEECCCCCcHHHHHHHHHHhc
Q 009263 53 KMGIKPPHG--VLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 53 ~~g~~~~~g--iLL~GppGtGKT~la~alA~~~ 83 (539)
.+.++.+.| +-|.|++|||||||+|.+.+-.
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred ceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333444444 9999999999999999999844
No 424
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00087 Score=69.43 Aligned_cols=28 Identities=32% Similarity=0.681 Sum_probs=23.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|.+.||+..
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3455568899999999999999999854
No 425
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.08 E-value=0.00048 Score=61.95 Aligned_cols=33 Identities=36% Similarity=0.705 Sum_probs=27.0
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
++|+|+||+|||++|+.++..++.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887654 444443
No 426
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.0036 Score=59.54 Aligned_cols=28 Identities=39% Similarity=0.608 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455668999999999999999999854
No 427
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.08 E-value=0.0008 Score=68.30 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=47.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEe-CchhhHH------HhhhhhHHHHHHHHHHHhCCCeEEEEe
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA-GSEFVEV------LVGVGSARIRDLFKRAKVNKPSVIFID 125 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~-~~~~~~~------~~g~~~~~~~~~f~~a~~~~p~Il~iD 125 (539)
...+++++|++|+|||+++++++... +..++.+- ..++.-. +.....-....++..+.+..|+.|++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivG 222 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEe
Confidence 34589999999999999999999876 22333332 1121110 011112236678888888999999999
Q ss_pred Ccc
Q 009263 126 EID 128 (539)
Q Consensus 126 EiD 128 (539)
|+-
T Consensus 223 EiR 225 (323)
T PRK13833 223 EVR 225 (323)
T ss_pred ecC
Confidence 984
No 428
>PTZ00035 Rad51 protein; Provisional
Probab=97.08 E-value=0.0035 Score=64.36 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhcC---------CCEEEEeCchh-hHH----H---hhh---------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGSEF-VEV----L---VGV--------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~~---------~~~~~~~~~~~-~~~----~---~g~--------------- 102 (539)
|+....-+.|+||||+|||+|+..++.... ..+++++...- ... . .+.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 455556688999999999999999985433 34566665431 110 0 000
Q ss_pred ----hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 103 ----GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 103 ----~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
....+..+........+.+|+||-|-.+....-.+.+ ...++...+.+++..|..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~---------~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRG---------ELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcc---------cHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 0011111122223456789999999987653211000 112234445555555544444456666644
No 429
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.07 E-value=0.0048 Score=61.12 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=60.1
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhH
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSA 105 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~ 105 (539)
=+++-.+++.+.+.++.+.+..| ..++||.|.+|+||+++++..|.-++..++.+....-.+ ...-..
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp ------HHHHHHHHHHHHHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 35677888888888888877765 357999999999999999999998898888876543211 122234
Q ss_pred HHHHHHHHHH-hCCCeEEEEeCcc
Q 009263 106 RIRDLFKRAK-VNKPSVIFIDEID 128 (539)
Q Consensus 106 ~~~~~f~~a~-~~~p~Il~iDEiD 128 (539)
.++.++..|. ...|.+++|+|-+
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHHhccCCCeEEEecCcc
Confidence 5666666554 4568888887744
No 430
>PRK06547 hypothetical protein; Provisional
Probab=97.07 E-value=0.00059 Score=63.06 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=29.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
..+.-|++.|++|+|||++++.+++.++.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 3456788999999999999999999998877654
No 431
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0005 Score=61.46 Aligned_cols=28 Identities=36% Similarity=0.660 Sum_probs=26.0
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
|-+.|||||||||+++-+|+.+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999875
No 432
>PRK13695 putative NTPase; Provisional
Probab=97.07 E-value=0.0067 Score=56.06 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.++|.|++|+|||+|++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998765
No 433
>PRK06696 uridine kinase; Validated
Probab=97.07 E-value=0.0012 Score=63.86 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=34.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 97 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~ 97 (539)
.+.-|.+.|+||+||||+|+.|+..+ +.+++.++..+|..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 45578899999999999999999988 67888888777754
No 434
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.06 E-value=0.0067 Score=55.95 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=28.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 95 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~ 95 (539)
-+++.||||+|||+++..++..+ +..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 36899999999999999998765 666777776643
No 435
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.022 Score=54.78 Aligned_cols=137 Identities=15% Similarity=0.077 Sum_probs=92.8
Q ss_pred CCceEEEECCCC-CcHHHHHHHHHHhcCC---------CEEEEeCchhhHH-HhhhhhHHHHHHHHHHH----hCCCeEE
Q 009263 58 PPHGVLLEGPPG-CGKTLVAKAIAGEAGV---------PFYQMAGSEFVEV-LVGVGSARIRDLFKRAK----VNKPSVI 122 (539)
Q Consensus 58 ~~~giLL~GppG-tGKT~la~alA~~~~~---------~~~~~~~~~~~~~-~~g~~~~~~~~~f~~a~----~~~p~Il 122 (539)
.....|+.|..+ +||..++.-++..+.. .++.+....-... -..-+...+|++...+. .....|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 345689999998 9999998888776522 2333322110000 00113345666555443 2244699
Q ss_pred EEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecC
Q 009263 123 FIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIR 202 (539)
Q Consensus 123 ~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~ 202 (539)
+|+++|.+.. ...|.||..++. ++.++++|..|+.+..+.|.+++ | +..+.++
T Consensus 94 II~~ae~mt~----------------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--R-Cq~i~~~ 146 (263)
T PRK06581 94 IIYSAELMNL----------------------NAANSCLKILED--APKNSYIFLITSRAASIISTIRS--R-CFKINVR 146 (263)
T ss_pred EEechHHhCH----------------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--c-eEEEeCC
Confidence 9999999753 456889988874 66778888888889999999998 7 4678899
Q ss_pred CCCHHHHHHHHHHHhccCC
Q 009263 203 APNAKGRTEILKIHASKVK 221 (539)
Q Consensus 203 ~P~~~er~~il~~~l~~~~ 221 (539)
.|+...-.+.+...+....
T Consensus 147 ~p~~~~~~e~~~~~~~p~~ 165 (263)
T PRK06581 147 SSILHAYNELYSQFIQPIA 165 (263)
T ss_pred CCCHHHHHHHHHHhccccc
Confidence 9999888887777766544
No 436
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.06 E-value=0.001 Score=62.42 Aligned_cols=134 Identities=22% Similarity=0.321 Sum_probs=59.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH-HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 139 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~ 139 (539)
-++|+||+|||||.+|-++|+..|.|++..+.-..... .++.+ +... +......=++|||-..-.+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~-----~el~~~~RiyL~~r~l~~G~------ 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTP-----SELKGTRRIYLDDRPLSDGI------ 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----S-----GGGTT-EEEES----GGG-S------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCH-----HHHcccceeeeccccccCCC------
Confidence 36899999999999999999999999999987654443 22322 1111 11121223788764331111
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCcC--CccccCCCccc-eeeecCCCCHHHHHHHHHH
Q 009263 140 DTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLL--DPALLRPGRFD-RKIRIRAPNAKGRTEILKI 215 (539)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~-~~~l--d~al~r~gRf~-~~i~v~~P~~~er~~il~~ 215 (539)
-........|+..++......++++=+-+.. ...+ ++-... .|. .+..++.|+.+.-..-.+.
T Consensus 71 -----------i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~--~f~w~i~rl~l~d~~~f~~ra~~ 137 (233)
T PF01745_consen 71 -----------INAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSL--DFRWHIRRLRLPDEEVFMARAKR 137 (233)
T ss_dssp -------------HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSS--SSEEEEEE-----HHHHHHHHHH
T ss_pred -----------cCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccC--CCeEEEEEEECCChHHHHHHHHH
Confidence 1112344566666776666455554333221 0000 111112 232 2556788888765554444
Q ss_pred Hhcc
Q 009263 216 HASK 219 (539)
Q Consensus 216 ~l~~ 219 (539)
..++
T Consensus 138 Rv~~ 141 (233)
T PF01745_consen 138 RVRQ 141 (233)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 437
>PF13245 AAA_19: Part of AAA domain
Probab=97.05 E-value=0.001 Score=52.61 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHH-HHHHHHHHhc------CCCEEEEeCc
Q 009263 61 GVLLEGPPGCGKT-LVAKAIAGEA------GVPFYQMAGS 93 (539)
Q Consensus 61 giLL~GppGtGKT-~la~alA~~~------~~~~~~~~~~ 93 (539)
-+++.|||||||| ++++.++... +..++.++..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3566999999999 5556665554 4556666544
No 438
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.04 E-value=0.0012 Score=63.47 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++++++..
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4456668999999999999999999864
No 439
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.04 E-value=0.004 Score=69.93 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh---cCCCEEEEeCchhhHH-H---hhh------------hhHHHHHHHHHHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGSEFVEV-L---VGV------------GSARIRDLFKRAK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~---~~~~~~~~~~~~~~~~-~---~g~------------~~~~~~~~f~~a~ 115 (539)
|+.....++|+||||||||+|+..++.. .+.++++++..+-... + .|. .+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4566667999999999999999776543 3667777765543221 0 000 1111111112233
Q ss_pred hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 009263 116 VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATN 180 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn 180 (539)
...+.+|+||-+..+..+..- .+...+. ........++++|..|..+-...++.+|.|-.
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~-~g~~g~~----~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQ 195 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAEL-EGEMGDS----HVGLQARLMSQALRKMTGALNNSGTTAIFINQ 195 (790)
T ss_pred cCCCeEEEEcchhhhcchhhc-cCCCCcc----cHHHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 457899999999998853210 0000000 00112233345555555444556677776543
No 440
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00097 Score=68.92 Aligned_cols=28 Identities=50% Similarity=0.733 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|.+.||+..
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 4455668999999999999999999854
No 441
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.04 E-value=0.0014 Score=65.98 Aligned_cols=27 Identities=41% Similarity=0.522 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.++.-+.|.||+|+|||||.+.+++..
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 344458899999999999999999855
No 442
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.04 E-value=0.003 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~ 81 (539)
++..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999854
No 443
>PRK14530 adenylate kinase; Provisional
Probab=97.04 E-value=0.00064 Score=65.31 Aligned_cols=30 Identities=37% Similarity=0.546 Sum_probs=26.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.|+|.||||+|||++++.||+.++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999776644
No 444
>PRK10436 hypothetical protein; Provisional
Probab=97.04 E-value=0.002 Score=68.73 Aligned_cols=95 Identities=15% Similarity=0.290 Sum_probs=57.9
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC---CEEEEe-CchhhH
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---PFYQMA-GSEFVE 97 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~~~~~~-~~~~~~ 97 (539)
..+|+++.-.+...+.+.+++. .+...+|++||+|+||||+..++.++++. .++++- ..++.-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~-------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ-------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH-------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 4567776655555555555432 23345889999999999999888777643 333331 112111
Q ss_pred H-----Hhh-hhhHHHHHHHHHHHhCCCeEEEEeCcch
Q 009263 98 V-----LVG-VGSARIRDLFKRAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 98 ~-----~~g-~~~~~~~~~f~~a~~~~p~Il~iDEiD~ 129 (539)
. .++ .........+..+.++.|+||++.||-.
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 0 011 1112355667777889999999999953
No 445
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.03 E-value=0.00056 Score=64.25 Aligned_cols=34 Identities=35% Similarity=0.699 Sum_probs=28.0
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
|+|.||||+|||++++.||...+.+++ +..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHH
Confidence 799999999999999999999987654 4455543
No 446
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.03 E-value=0.0027 Score=65.66 Aligned_cols=71 Identities=23% Similarity=0.232 Sum_probs=43.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcC------CCEEEEe-CchhhHH------------HhhhhhHHHHHHHHHHHhCCC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAG------VPFYQMA-GSEFVEV------------LVGVGSARIRDLFKRAKVNKP 119 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~------~~~~~~~-~~~~~~~------------~~g~~~~~~~~~f~~a~~~~p 119 (539)
...++++||+|+|||++++++++.+. ..++.+. ..++.-. ..+.........+..+.+..|
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 34589999999999999999998762 2233221 1111100 001111224455666777899
Q ss_pred eEEEEeCcch
Q 009263 120 SVIFIDEIDA 129 (539)
Q Consensus 120 ~Il~iDEiD~ 129 (539)
.++++.|+-.
T Consensus 214 d~i~vGEiRd 223 (358)
T TIGR02524 214 HAILVGEARD 223 (358)
T ss_pred CEEeeeeeCC
Confidence 9999999743
No 447
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.03 E-value=0.0049 Score=58.36 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4466679999999999999999999854
No 448
>PRK10867 signal recognition particle protein; Provisional
Probab=97.03 E-value=0.0098 Score=62.90 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=47.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhHH----H------hh----------hhhHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEV----L------VG----------VGSARIRDLFK 112 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~~~~~----~------~g----------~~~~~~~~~f~ 112 (539)
.+|.-++++||+|+|||+++-.+|..+ +..+..+++..+... + .+ .........+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999888777644 666777777644321 0 00 01112234455
Q ss_pred HHHhCCCeEEEEeCcchh
Q 009263 113 RAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 113 ~a~~~~p~Il~iDEiD~l 130 (539)
.++.....+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 556566779999877654
No 449
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.03 E-value=0.002 Score=65.49 Aligned_cols=35 Identities=29% Similarity=0.548 Sum_probs=31.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
..++..|+|+|+||+|||++++.+|..++.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 46777899999999999999999999999999943
No 450
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.03 E-value=0.0032 Score=64.57 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=65.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh-h-----HHH--hhh---------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEF-V-----EVL--VGV--------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~~-~-----~~~--~g~--------------- 102 (539)
|+.+..-+.++|+||+|||.|+..+|-.. +.++++++...- . ... .+.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 35555568899999999999999887533 236777776551 1 110 000
Q ss_pred hhHH----HHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 103 GSAR----IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 103 ~~~~----~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
.... +..+........+.+|+||-|-.+......+.+ ....+...+.+++..|..+....++.||.+
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g---------~l~~r~~~L~~~l~~L~~lA~~~~vaVviT 269 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRG---------ELSARQMHLGKFLRSLQRLADEFGVAVVIT 269 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCc---------cHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 0011 111112224457889999999988654211100 111233446666666655555566777755
Q ss_pred cC
Q 009263 179 TN 180 (539)
Q Consensus 179 tn 180 (539)
..
T Consensus 270 Nq 271 (342)
T PLN03186 270 NQ 271 (342)
T ss_pred cC
Confidence 43
No 451
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.02 E-value=0.0009 Score=68.06 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=47.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEe-CchhhH---H---HhhhhhHHHHHHHHHHHhCCCeEEEEe
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA-GSEFVE---V---LVGVGSARIRDLFKRAKVNKPSVIFID 125 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~-~~~~~~---~---~~g~~~~~~~~~f~~a~~~~p~Il~iD 125 (539)
..++++++|++|+|||+++++++... ...++.+. ..++.- . +.......+.+++..+.+..|+.|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 45689999999999999999999863 12233221 112110 0 011112346778888999999999999
Q ss_pred Ccc
Q 009263 126 EID 128 (539)
Q Consensus 126 EiD 128 (539)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 984
No 452
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.02 E-value=0.00053 Score=62.68 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.6
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
++|.||||+|||++++.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986654 55554
No 453
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.02 E-value=0.018 Score=59.93 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=27.0
Q ss_pred cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccC
Q 009263 184 LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV 220 (539)
Q Consensus 184 ~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~ 220 (539)
.|..+|-. |.-+.|.+.-.+.+.-++.+..++...
T Consensus 198 ~LskaLPn--~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 198 PLSKALPN--RVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hHHHhCCC--CceeEEeecCCCHHHHHHHHHHHhccc
Confidence 46667765 666889999999888888888888653
No 454
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.02 E-value=0.0045 Score=67.89 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++..+.|.||+|+|||||++.+++..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999855
No 455
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.01 E-value=0.0055 Score=63.02 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
.-.+|+||||||||++++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999876
No 456
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.01 E-value=0.0021 Score=49.76 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=23.8
Q ss_pred EEEECCCCCcHHHHHHHHHHhc-CCCEEEEe
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEA-GVPFYQMA 91 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~-~~~~~~~~ 91 (539)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 5789999999999999999985 34444443
No 457
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.00 E-value=0.0023 Score=60.46 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
|......++|.|+.|+|||++.+.|+.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 4455567889999999999999999665
No 458
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.99 E-value=0.0021 Score=74.97 Aligned_cols=134 Identities=22% Similarity=0.263 Sum_probs=90.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH--HHhhh----hh---HHHHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE--VLVGV----GS---ARIRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~--~~~g~----~~---~~~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
.+||.||+.+|||+....+|++.|..|+.++-++..+ .|.|. .. ..-..++-.|.+... -|++||+.-..
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy-WIVLDELNLAp 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY-WIVLDELNLAP 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc-EEEeeccccCc
Confidence 5899999999999999999999999999998766543 23332 11 112344555655555 68899986533
Q ss_pred hhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC---------CCCCCcEEEEEecCCCCc------CCccccCCCccc
Q 009263 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG---------FDTGKGVIFLAATNRRDL------LDPALLRPGRFD 196 (539)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~---------~~~~~~vivIaatn~~~~------ld~al~r~gRf~ 196 (539)
.. ....+|.||..-.. ..+++++.++||-|+|.. |..|++. ||-
T Consensus 969 TD-------------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl 1027 (4600)
T COG5271 969 TD-------------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL 1027 (4600)
T ss_pred HH-------------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH
Confidence 22 23456666543211 134567888888887763 6778887 875
Q ss_pred eeeecCCCCHHHHHHHHHHHh
Q 009263 197 RKIRIRAPNAKGRTEILKIHA 217 (539)
Q Consensus 197 ~~i~v~~P~~~er~~il~~~l 217 (539)
.++|.--..++...|++..+
T Consensus 1028 -E~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1028 -EMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred -hhhcccCcHHHHHHHHhccC
Confidence 45666666777888876554
No 459
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.99 E-value=0.0011 Score=69.09 Aligned_cols=28 Identities=46% Similarity=0.663 Sum_probs=23.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+..+..+.|.||+|+|||+|.+.||+..
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455568999999999999999999844
No 460
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.99 E-value=0.0034 Score=63.88 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhcC---------CCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~~---------~~~~~~~~~~ 94 (539)
|+.+..-+.++||||+|||+|+..++.... ..+++++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 455566688999999999999999986321 2567776654
No 461
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.98 E-value=0.0027 Score=60.19 Aligned_cols=27 Identities=44% Similarity=0.608 Sum_probs=24.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
+.++..+.|.||+|+|||+|.+.+++.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456667999999999999999999997
No 462
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.98 E-value=0.00082 Score=62.18 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=29.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
+..|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999998876653
No 463
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.98 E-value=0.027 Score=56.08 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=29.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
..++.++|+||+|+|||+++..+|..+ +..+..+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 456778899999999999999998766 55666666553
No 464
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.97 E-value=0.0039 Score=59.26 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|.+.+++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999854
No 465
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0038 Score=59.33 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 4556679999999999999999999864
No 466
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.97 E-value=0.0018 Score=63.08 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4566679999999999999999999754
No 467
>PTZ00202 tuzin; Provisional
Probab=96.97 E-value=0.0064 Score=63.33 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=51.2
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
|-...+.+|.+....+|..++.... ...|.-+.|+||+|+|||++++.++..++.+.+.++...
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 4457889999999999988775322 234557889999999999999999999998878777653
No 468
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.96 E-value=0.0024 Score=59.11 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC---CCEEEEeCchhhH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVE 97 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~---~~~~~~~~~~~~~ 97 (539)
..|.-++|.|+||+|||++++.+++.+. ...+.++...+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 4566799999999999999999999885 3355666655543
No 469
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.0013 Score=68.75 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|.+.||+..
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4455668999999999999999999854
No 470
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.96 E-value=0.0025 Score=59.85 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=42.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc-------------CCCEEEEeCchhhHH----Hh---hh----------------
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA-------------GVPFYQMAGSEFVEV----LV---GV---------------- 102 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~-------------~~~~~~~~~~~~~~~----~~---g~---------------- 102 (539)
..-.+|+||||+|||+++..++..+ +.++++++...-... +. ..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~ 111 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWG 111 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccc
Confidence 3448999999999999999998754 236677765432211 00 00
Q ss_pred -------------hhHHHHHHHHHHHh-CCCeEEEEeCcchhhhh
Q 009263 103 -------------GSARIRDLFKRAKV-NKPSVIFIDEIDALATR 133 (539)
Q Consensus 103 -------------~~~~~~~~f~~a~~-~~p~Il~iDEiD~l~~~ 133 (539)
....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 112 CIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred cceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01123344555555 57899999999998764
No 471
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.96 E-value=0.001 Score=63.65 Aligned_cols=28 Identities=46% Similarity=0.686 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566678999999999999999999864
No 472
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.95 E-value=0.0045 Score=61.12 Aligned_cols=117 Identities=21% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhcC---------CCEEEEeCch-hhHHHh-------h-h--------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGSE-FVEVLV-------G-V-------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~~---------~~~~~~~~~~-~~~~~~-------g-~-------------- 102 (539)
|+....-.=|+||||+|||.|+..+|-... ..+++++... |...-. + .
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 444444466999999999999999986553 3477776543 221100 0 0
Q ss_pred ----hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 103 ----GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 103 ----~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
....+..+..........+|+||-|-.+....-.+.. ...++...+..++..|..+....++.||.|
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~---------~~~~R~~~L~~~~~~L~~lA~~~~iaVvvT 184 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRG---------DLAERQRMLARLARILKRLARKYNIAVVVT 184 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTT---------THHHHHHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccch---------hhHHHHHHHHHHHHHHHHHHHhCCceEEee
Confidence 0011111222223456789999999998865321100 123345566666666655555567777655
Q ss_pred cC
Q 009263 179 TN 180 (539)
Q Consensus 179 tn 180 (539)
.+
T Consensus 185 Nq 186 (256)
T PF08423_consen 185 NQ 186 (256)
T ss_dssp EE
T ss_pred ce
Confidence 44
No 473
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.95 E-value=0.0031 Score=61.59 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHh
Q 009263 62 VLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~ 82 (539)
.+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999864
No 474
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.95 E-value=0.0016 Score=63.11 Aligned_cols=28 Identities=39% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456668999999999999999999853
No 475
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.95 E-value=0.0014 Score=67.89 Aligned_cols=28 Identities=46% Similarity=0.700 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|.+.||+..
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3455668999999999999999999854
No 476
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95 E-value=0.0034 Score=60.15 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4566679999999999999999999854
No 477
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.94 E-value=0.0047 Score=68.54 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++..+.|.||+|+|||||++.+++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455669999999999999999999955
No 478
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.94 E-value=0.0055 Score=58.32 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~ 81 (539)
.++-++|.||+|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999974
No 479
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.94 E-value=0.0033 Score=60.31 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455668999999999999999999854
No 480
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.94 E-value=0.0014 Score=63.03 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566678999999999999999999854
No 481
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0019 Score=62.63 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.....++|.||+|+|||||++.+++-+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 4455679999999999999999999855
No 482
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.93 E-value=0.01 Score=64.66 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhHHHhhh----------------------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGV---------------------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~~~~~~~g~---------------------------- 102 (539)
|+.++..+||+|+||+|||+|+..++.+. +.++++++..+-...+...
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Q ss_pred --------hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 103 --------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 103 --------~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
....+..+........|..|+||-+..+..... ........+..++..+ ...++.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d-------------~~~~~r~~l~~L~~~L----k~~g~T 169 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFS-------------NEAVVRRELRRLFAWL----KQKGVT 169 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhcc-------------CHHHHHHHHHHHHHHH----HhCCCE
Q ss_pred EEEecCCCCcCCc
Q 009263 175 FLAATNRRDLLDP 187 (539)
Q Consensus 175 vIaatn~~~~ld~ 187 (539)
+|.+++.....++
T Consensus 170 vLlt~~~~~~~~~ 182 (509)
T PRK09302 170 AVITGERGDEYGP 182 (509)
T ss_pred EEEEECCccCcCC
No 483
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.93 E-value=0.0021 Score=66.61 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 484
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0017 Score=63.30 Aligned_cols=76 Identities=28% Similarity=0.315 Sum_probs=49.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCC--EEEEeCchh--------hHH-----------------Hhh--hhhHH
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSEF--------VEV-----------------LVG--VGSAR 106 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~~~~~~~--------~~~-----------------~~g--~~~~~ 106 (539)
+..+..+-|.|++||||||++|.+.+-.... -+.+.+.++ ... |.. .+.++
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 4556678999999999999999999865321 122332221 110 110 13344
Q ss_pred HHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 107 IRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 107 ~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
-|-.++.|....|.+++.||.-+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhc
Confidence 4556777888899999999987654
No 485
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.92 E-value=0.0028 Score=60.67 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455668999999999999999999864
No 486
>PRK14527 adenylate kinase; Provisional
Probab=96.92 E-value=0.00083 Score=63.22 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=28.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
+.+.-++++||||+|||++++.++...+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 455679999999999999999999999876554
No 487
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.92 E-value=0.001 Score=61.36 Aligned_cols=31 Identities=39% Similarity=0.638 Sum_probs=28.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
..++|+|++|+|||++++.+|..++.+++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3589999999999999999999999998754
No 488
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.91 E-value=0.0018 Score=63.85 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566679999999999999999999864
No 489
>PRK14528 adenylate kinase; Provisional
Probab=96.90 E-value=0.00095 Score=62.58 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=26.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+++.||||+|||++++.++...+.+++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999877654
No 490
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.90 E-value=0.014 Score=61.75 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeCchh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEF 95 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~~~~ 95 (539)
.++.++|.||+|+||||++..+|..+ +..+..+++..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35578999999999999999887654 356777777654
No 491
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.90 E-value=0.015 Score=61.27 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=46.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-------H--------hh-----hhhHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-------L--------VG-----VGSARIRDLFKRA 114 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-------~--------~g-----~~~~~~~~~f~~a 114 (539)
+|.-++|+|++|+||||++..+|..+ |..+..+++..+... + .. .......+.+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 46679999999999999999998766 667777766544311 0 00 0011123345555
Q ss_pred HhCCCeEEEEeCcch
Q 009263 115 KVNKPSVIFIDEIDA 129 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~ 129 (539)
+.....+||||=...
T Consensus 179 ~~~~~DvViIDTaGr 193 (429)
T TIGR01425 179 KKENFDIIIVDTSGR 193 (429)
T ss_pred HhCCCCEEEEECCCC
Confidence 555667899887654
No 492
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.00095 Score=62.01 Aligned_cols=33 Identities=36% Similarity=0.796 Sum_probs=26.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
.++|.||||+||||+|+.||+.++.+ .++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~--hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP--HLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc--EEcHhHH
Confidence 47999999999999999999995554 4443443
No 493
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0023 Score=61.57 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456668999999999999999999854
No 494
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0016 Score=62.75 Aligned_cols=28 Identities=39% Similarity=0.680 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455668999999999999999999854
No 495
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.86 E-value=0.007 Score=58.34 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~ 81 (539)
.....++|.||+|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999987
No 496
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.86 E-value=0.0046 Score=62.66 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++..
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455568899999999999999999854
No 497
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.86 E-value=0.0011 Score=61.95 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
-+++.||||+||||+++.++..++.+.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 57899999999999999999999866443
No 498
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.00077 Score=61.07 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=26.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
-++++|.||||||++++.++ .++.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8998877654
No 499
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0013 Score=62.87 Aligned_cols=28 Identities=43% Similarity=0.754 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455668999999999999999999854
No 500
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0015 Score=64.44 Aligned_cols=28 Identities=36% Similarity=0.649 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||+|++.+++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456669999999999999999999854
Done!