Query 009263
Match_columns 539
No_of_seqs 411 out of 3382
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 22:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 6.2E-81 2.1E-85 661.0 44.7 447 15-496 4-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 2.5E-78 8.6E-83 644.5 45.4 465 15-518 21-490 (499)
3 4b4t_J 26S protease regulatory 100.0 9.9E-52 3.4E-56 424.3 27.3 257 13-277 135-392 (405)
4 4b4t_I 26S protease regulatory 100.0 1.3E-50 4.5E-55 416.6 27.0 258 13-278 169-427 (437)
5 4b4t_H 26S protease regulatory 100.0 4E-50 1.4E-54 417.0 26.9 260 13-280 196-456 (467)
6 4b4t_M 26S protease regulatory 100.0 1.8E-49 6.2E-54 413.7 27.4 257 13-277 168-425 (434)
7 4b4t_L 26S protease subunit RP 100.0 2.5E-49 8.5E-54 413.0 28.1 257 13-277 168-425 (437)
8 4b4t_K 26S protease regulatory 100.0 1.8E-48 6.3E-53 405.9 27.4 256 13-276 159-416 (428)
9 2di4_A Zinc protease, cell div 100.0 7.8E-45 2.7E-49 346.9 16.5 197 276-500 2-205 (238)
10 3cf2_A TER ATPase, transitiona 100.0 2.5E-43 8.4E-48 391.8 8.8 231 19-257 470-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 5.8E-41 2E-45 372.8 21.7 248 19-277 197-462 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 2.4E-38 8.1E-43 311.8 28.5 256 15-278 1-256 (257)
13 3cf0_A Transitional endoplasmi 100.0 5.2E-37 1.8E-41 309.4 24.7 249 19-275 8-282 (301)
14 3h4m_A Proteasome-activating n 100.0 1.5E-36 5.1E-41 303.3 27.1 255 15-277 6-261 (285)
15 2x8a_A Nuclear valosin-contain 100.0 3.3E-37 1.1E-41 306.2 22.1 247 19-276 3-266 (274)
16 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6.5E-37 2.2E-41 301.8 20.8 257 21-284 1-259 (262)
17 1ixz_A ATP-dependent metallopr 100.0 8.6E-35 2.9E-39 285.8 28.0 247 17-271 7-253 (254)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.6E-35 8.7E-40 299.6 23.6 226 18-257 4-233 (322)
19 3eie_A Vacuolar protein sortin 100.0 1.9E-35 6.7E-40 300.8 19.8 232 13-258 5-239 (322)
20 1iy2_A ATP-dependent metallopr 100.0 2E-33 6.9E-38 279.9 28.1 246 18-271 32-277 (278)
21 2qp9_X Vacuolar protein sortin 100.0 2.3E-34 7.7E-39 296.6 21.6 230 14-257 39-271 (355)
22 3hu3_A Transitional endoplasmi 100.0 7.4E-34 2.5E-38 303.1 26.0 245 20-275 198-460 (489)
23 2r62_A Cell division protease 100.0 4.2E-36 1.4E-40 297.5 4.6 254 18-278 3-257 (268)
24 2zan_A Vacuolar protein sortin 100.0 4.6E-33 1.6E-37 295.0 19.7 229 15-257 123-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 4.9E-31 1.7E-35 272.0 23.2 247 16-276 74-336 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 2.2E-31 7.6E-36 267.5 18.4 247 15-275 10-273 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 1.4E-30 4.9E-35 271.8 21.4 247 15-275 104-366 (389)
28 1ypw_A Transitional endoplasmi 100.0 2.4E-33 8.1E-38 316.8 -0.2 233 18-258 469-702 (806)
29 3t15_A Ribulose bisphosphate c 100.0 7.2E-30 2.5E-34 256.0 9.9 230 54-306 31-282 (293)
30 1ypw_A Transitional endoplasmi 100.0 2.1E-27 7.2E-32 268.2 26.2 247 19-276 197-461 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 6.3E-25 2.1E-29 233.6 1.5 218 15-249 26-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 2.1E-22 7E-27 203.0 13.7 222 27-268 32-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 8.1E-22 2.8E-26 203.6 16.4 221 20-274 38-330 (368)
34 3pfi_A Holliday junction ATP-d 99.9 5.5E-21 1.9E-25 195.1 21.5 223 13-275 16-255 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 1.6E-20 5.5E-25 190.3 18.7 225 15-275 1-239 (324)
36 3m6a_A ATP-dependent protease 99.8 2.1E-21 7E-26 210.4 7.9 247 4-278 59-345 (543)
37 1d2n_A N-ethylmaleimide-sensit 99.8 9.1E-20 3.1E-24 180.4 15.0 237 13-273 20-263 (272)
38 1ofh_A ATP-dependent HSL prote 99.8 9.9E-20 3.4E-24 183.0 15.4 237 26-274 15-299 (310)
39 2z4s_A Chromosomal replication 99.8 3.3E-19 1.1E-23 188.4 18.8 222 21-275 100-333 (440)
40 2v1u_A Cell division control p 99.8 1.5E-18 5.1E-23 179.6 21.1 223 24-275 17-277 (387)
41 2chg_A Replication factor C sm 99.8 2.1E-18 7.2E-23 163.8 17.3 209 13-272 4-224 (226)
42 3pvs_A Replication-associated 99.8 4E-19 1.4E-23 187.6 13.3 211 16-275 16-245 (447)
43 1g41_A Heat shock protein HSLU 99.8 6.5E-20 2.2E-24 191.4 6.0 169 26-214 15-189 (444)
44 3hws_A ATP-dependent CLP prote 99.8 2.3E-18 7.8E-23 177.7 16.4 222 27-258 16-326 (363)
45 1in4_A RUVB, holliday junction 99.8 2.2E-17 7.6E-22 168.3 23.3 221 16-276 15-252 (334)
46 1sxj_A Activator 1 95 kDa subu 99.8 1.9E-18 6.3E-23 186.5 15.7 230 13-274 26-274 (516)
47 3u61_B DNA polymerase accessor 99.8 4E-18 1.4E-22 172.9 16.9 209 12-272 12-235 (324)
48 1l8q_A Chromosomal replication 99.8 5.8E-18 2E-22 171.8 16.1 198 20-253 5-214 (324)
49 2qby_B CDC6 homolog 3, cell di 99.8 9.2E-18 3.2E-22 173.9 16.7 212 25-275 19-271 (384)
50 3bos_A Putative DNA replicatio 99.8 1.1E-17 3.9E-22 161.2 15.9 207 20-272 22-241 (242)
51 1njg_A DNA polymerase III subu 99.7 3.5E-17 1.2E-21 157.3 18.3 210 13-271 10-248 (250)
52 1g8p_A Magnesium-chelatase 38 99.7 2.6E-17 9E-22 168.3 18.3 225 14-277 12-325 (350)
53 2r44_A Uncharacterized protein 99.7 1.9E-17 6.6E-22 168.4 15.3 218 20-277 21-300 (331)
54 2qby_A CDC6 homolog 1, cell di 99.7 9.9E-17 3.4E-21 165.7 19.8 224 22-275 16-273 (386)
55 1fnn_A CDC6P, cell division co 99.7 1.8E-16 6.2E-21 164.2 20.3 230 10-275 4-275 (389)
56 1sxj_D Activator 1 41 kDa subu 99.7 3E-17 1E-21 168.1 14.2 213 14-272 25-261 (353)
57 1jbk_A CLPB protein; beta barr 99.7 7.5E-18 2.6E-22 156.1 6.9 162 19-213 15-194 (195)
58 1r6b_X CLPA protein; AAA+, N-t 99.7 5E-17 1.7E-21 183.5 14.0 224 20-275 180-434 (758)
59 3pxg_A Negative regulator of g 99.7 1.3E-16 4.5E-21 169.8 15.8 211 16-274 170-406 (468)
60 1um8_A ATP-dependent CLP prote 99.7 1.2E-16 4E-21 165.6 15.1 237 26-272 21-363 (376)
61 2chq_A Replication factor C sm 99.7 7.7E-17 2.6E-21 162.4 13.0 212 13-271 4-223 (319)
62 3te6_A Regulatory protein SIR3 99.7 9.1E-17 3.1E-21 161.2 13.0 160 28-220 22-214 (318)
63 4fcw_A Chaperone protein CLPB; 99.7 1.3E-16 4.5E-21 160.4 13.8 204 26-256 17-280 (311)
64 1jr3_A DNA polymerase III subu 99.7 8.4E-16 2.9E-20 158.4 18.1 208 16-272 6-242 (373)
65 1sxj_B Activator 1 37 kDa subu 99.7 4.4E-16 1.5E-20 157.0 15.1 207 15-272 10-229 (323)
66 1iqp_A RFCS; clamp loader, ext 99.7 8.1E-16 2.8E-20 155.4 16.6 212 13-271 12-231 (327)
67 3pxi_A Negative regulator of g 99.7 3.9E-16 1.3E-20 176.1 15.4 199 26-255 491-725 (758)
68 1qvr_A CLPB protein; coiled co 99.7 2.2E-16 7.4E-21 180.2 12.7 205 20-257 164-395 (854)
69 3pxi_A Negative regulator of g 99.7 1.1E-15 3.7E-20 172.4 17.7 194 17-258 171-389 (758)
70 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.7E-16 9.1E-21 167.5 10.4 211 26-276 22-287 (500)
71 1r6b_X CLPA protein; AAA+, N-t 99.6 9.4E-16 3.2E-20 173.1 14.1 200 26-254 458-715 (758)
72 2p65_A Hypothetical protein PF 99.6 1.3E-16 4.3E-21 147.4 5.3 155 19-205 15-187 (187)
73 1sxj_E Activator 1 40 kDa subu 99.6 1.6E-15 5.5E-20 155.4 12.6 196 15-253 3-243 (354)
74 1sxj_C Activator 1 40 kDa subu 99.6 3.2E-15 1.1E-19 152.6 12.2 213 13-271 12-236 (340)
75 2bjv_A PSP operon transcriptio 99.6 1.8E-14 6.3E-19 141.6 15.1 207 23-267 3-250 (265)
76 3f9v_A Minichromosome maintena 99.6 1.2E-15 4.2E-20 166.5 5.1 221 26-275 295-588 (595)
77 1qvr_A CLPB protein; coiled co 99.5 1.3E-14 4.4E-19 165.6 12.2 203 25-256 557-821 (854)
78 1w5s_A Origin recognition comp 99.5 2.3E-13 7.7E-18 142.0 19.8 239 9-275 8-294 (412)
79 1ojl_A Transcriptional regulat 99.5 3.1E-14 1E-18 143.0 11.2 202 26-269 2-247 (304)
80 3k1j_A LON protease, ATP-depen 99.5 3.1E-13 1.1E-17 148.3 15.2 219 17-273 32-374 (604)
81 3n70_A Transport activator; si 99.4 2.3E-13 8E-18 121.2 7.5 86 27-132 2-90 (145)
82 3co5_A Putative two-component 99.4 1.8E-13 6.1E-18 121.7 5.7 85 27-132 5-89 (143)
83 1a5t_A Delta prime, HOLB; zinc 99.4 5.6E-12 1.9E-16 128.2 16.8 160 57-251 22-209 (334)
84 3kw6_A 26S protease regulatory 99.3 5.5E-12 1.9E-16 99.7 9.1 75 202-276 1-75 (78)
85 2gno_A DNA polymerase III, gam 99.3 1.2E-11 4E-16 124.0 13.0 142 30-217 1-152 (305)
86 2krk_A 26S protease regulatory 99.3 7E-12 2.4E-16 100.7 8.9 78 200-277 7-84 (86)
87 3cmw_A Protein RECA, recombina 99.3 4.3E-12 1.5E-16 150.4 8.9 155 20-182 1014-1218(1706)
88 3vlf_B 26S protease regulatory 99.3 1.7E-11 5.8E-16 99.1 9.3 79 205-283 2-80 (88)
89 3ec2_A DNA replication protein 99.2 6.5E-11 2.2E-15 109.0 10.7 104 19-130 3-112 (180)
90 4akg_A Glutathione S-transfera 99.1 2.2E-10 7.4E-15 141.6 12.6 139 58-219 1266-1433(2695)
91 3aji_B S6C, proteasome (prosom 99.0 3.9E-10 1.3E-14 90.1 7.7 73 205-277 2-74 (83)
92 1ny5_A Transcriptional regulat 99.0 7.5E-10 2.6E-14 114.7 11.0 207 25-270 136-383 (387)
93 2fna_A Conserved hypothetical 99.0 1.1E-08 3.7E-13 103.9 19.4 190 19-249 6-252 (357)
94 2w58_A DNAI, primosome compone 99.0 2.3E-09 8E-14 100.3 10.4 104 21-131 20-128 (202)
95 2dzn_B 26S protease regulatory 98.9 3.8E-10 1.3E-14 89.9 3.9 72 207-278 1-72 (82)
96 3f8t_A Predicted ATPase involv 98.9 5.3E-09 1.8E-13 108.6 13.2 213 28-276 215-485 (506)
97 2qen_A Walker-type ATPase; unk 98.9 1.3E-07 4.4E-12 95.7 22.4 193 20-249 6-248 (350)
98 2kjq_A DNAA-related protein; s 98.9 3.5E-09 1.2E-13 94.5 8.4 59 58-131 35-96 (149)
99 2vhj_A Ntpase P4, P4; non- hyd 98.8 9.2E-10 3.1E-14 109.4 3.0 121 56-189 120-242 (331)
100 2qgz_A Helicase loader, putati 98.8 1.5E-08 5E-13 101.6 9.1 102 22-131 120-227 (308)
101 2r2a_A Uncharacterized protein 98.7 9E-09 3.1E-13 96.3 5.7 130 59-209 5-158 (199)
102 3dzd_A Transcriptional regulat 98.7 8.6E-08 2.9E-12 98.4 13.4 193 26-254 129-361 (368)
103 4akg_A Glutathione S-transfera 98.6 4.2E-07 1.5E-11 112.7 17.3 131 59-214 645-790 (2695)
104 1svm_A Large T antigen; AAA+ f 98.5 8.5E-08 2.9E-12 98.4 6.7 120 54-203 164-284 (377)
105 3cmu_A Protein RECA, recombina 98.4 3.7E-07 1.3E-11 109.8 9.3 118 55-179 1423-1561(2050)
106 1tue_A Replication protein E1; 98.4 4.5E-07 1.5E-11 84.1 6.5 32 57-88 56-87 (212)
107 3vkg_A Dynein heavy chain, cyt 98.3 1.9E-06 6.6E-11 107.6 10.7 138 59-218 1304-1470(3245)
108 2c9o_A RUVB-like 1; hexameric 98.2 2.1E-06 7.1E-11 90.7 9.4 128 119-274 296-437 (456)
109 1jr3_D DNA polymerase III, del 98.2 8.3E-06 2.8E-10 82.6 12.9 177 58-274 17-209 (343)
110 1ye8_A Protein THEP1, hypothet 98.2 6E-06 2.1E-10 75.6 10.4 28 61-88 2-29 (178)
111 2cvh_A DNA repair and recombin 98.1 7.1E-06 2.4E-10 77.1 8.2 40 55-94 16-55 (220)
112 3vkg_A Dynein heavy chain, cyt 98.0 2.2E-05 7.4E-10 98.4 13.3 133 60-213 605-749 (3245)
113 2w0m_A SSO2452; RECA, SSPF, un 98.0 9.6E-06 3.3E-10 76.7 8.2 39 55-93 19-60 (235)
114 1u0j_A DNA replication protein 98.0 1.1E-05 3.6E-10 78.3 7.7 27 59-85 104-130 (267)
115 2ehv_A Hypothetical protein PH 98.0 4.6E-05 1.6E-09 73.0 12.3 39 55-93 26-68 (251)
116 1z6t_A APAF-1, apoptotic prote 98.0 0.00018 6E-09 78.3 17.9 182 20-248 118-329 (591)
117 1n0w_A DNA repair protein RAD5 97.9 1.8E-05 6.1E-10 75.5 8.4 78 55-132 20-133 (243)
118 3upu_A ATP-dependent DNA helic 97.9 4.3E-05 1.5E-09 80.6 10.8 69 13-93 11-83 (459)
119 1xp8_A RECA protein, recombina 97.8 4E-05 1.4E-09 78.2 9.4 78 55-132 70-166 (366)
120 3hr8_A Protein RECA; alpha and 97.8 5E-05 1.7E-09 77.0 9.7 78 55-132 57-153 (356)
121 2z43_A DNA repair and recombin 97.8 3.6E-05 1.2E-09 77.4 8.7 79 55-133 103-218 (324)
122 4a74_A DNA repair and recombin 97.8 4.2E-05 1.4E-09 72.2 8.4 40 55-94 21-69 (231)
123 2zr9_A Protein RECA, recombina 97.8 3E-05 1E-09 78.8 7.5 78 55-132 57-153 (349)
124 1qhx_A CPT, protein (chloramph 97.8 6E-05 2E-09 68.3 8.6 39 59-97 3-41 (178)
125 3sfz_A APAF-1, apoptotic pepti 97.8 0.00052 1.8E-08 80.9 18.8 179 20-246 118-327 (1249)
126 1v5w_A DMC1, meiotic recombina 97.8 6.2E-05 2.1E-09 76.3 9.2 79 55-133 118-234 (343)
127 1u94_A RECA protein, recombina 97.7 7.5E-05 2.6E-09 75.9 8.2 78 55-132 59-155 (356)
128 3cmu_A Protein RECA, recombina 97.7 0.0001 3.4E-09 89.1 10.3 79 55-133 1077-1174(2050)
129 3lda_A DNA repair protein RAD5 97.6 8E-05 2.7E-09 76.9 8.0 79 55-133 174-288 (400)
130 2dr3_A UPF0273 protein PH0284; 97.6 0.00021 7.2E-09 68.1 10.3 39 55-93 19-60 (247)
131 2zts_A Putative uncharacterize 97.6 0.00017 5.9E-09 68.8 8.6 39 55-93 26-68 (251)
132 3io5_A Recombination and repai 97.6 8.9E-05 3E-09 73.4 6.6 76 56-132 26-125 (333)
133 4gp7_A Metallophosphoesterase; 97.6 0.0001 3.5E-09 66.7 6.5 22 57-78 7-28 (171)
134 1pzn_A RAD51, DNA repair and r 97.5 0.00019 6.4E-09 72.9 9.1 40 55-94 127-175 (349)
135 1gvn_B Zeta; postsegregational 97.5 0.00023 8E-09 70.1 9.2 60 32-95 10-69 (287)
136 3jvv_A Twitching mobility prot 97.5 0.00015 5.2E-09 73.6 7.9 70 59-128 123-206 (356)
137 2i1q_A DNA repair and recombin 97.5 0.00014 4.7E-09 73.0 7.5 28 55-82 94-121 (322)
138 3vaa_A Shikimate kinase, SK; s 97.5 9.5E-05 3.2E-09 68.6 5.1 35 56-90 22-56 (199)
139 1nlf_A Regulatory protein REPA 97.4 0.00019 6.4E-09 70.3 7.4 29 55-83 26-54 (279)
140 2p5t_B PEZT; postsegregational 97.4 0.00031 1E-08 67.8 8.3 40 56-95 29-68 (253)
141 2r6a_A DNAB helicase, replicat 97.4 0.00026 8.7E-09 74.6 8.4 39 55-93 199-241 (454)
142 2a5y_B CED-4; apoptosis; HET: 97.4 0.0047 1.6E-07 66.5 18.4 172 29-246 131-336 (549)
143 3trf_A Shikimate kinase, SK; a 97.4 0.00012 4.2E-09 66.7 4.9 32 59-90 5-36 (185)
144 2r8r_A Sensor protein; KDPD, P 97.4 0.0013 4.5E-08 61.9 11.9 33 60-92 7-42 (228)
145 2rhm_A Putative kinase; P-loop 97.4 0.00014 4.7E-09 66.7 4.9 34 56-89 2-35 (193)
146 1cr0_A DNA primase/helicase; R 97.4 0.00024 8.2E-09 70.2 6.9 39 54-92 30-72 (296)
147 1zp6_A Hypothetical protein AT 97.4 0.00013 4.4E-09 66.8 4.6 40 56-95 6-45 (191)
148 2iut_A DNA translocase FTSK; n 97.4 0.0017 5.6E-08 69.5 13.6 74 120-214 345-420 (574)
149 1vma_A Cell division protein F 97.3 0.0036 1.2E-07 62.0 14.8 73 57-129 102-197 (306)
150 2q6t_A DNAB replication FORK h 97.3 0.00043 1.5E-08 72.6 8.3 39 55-93 196-238 (444)
151 2orw_A Thymidine kinase; TMTK, 97.3 6.3E-05 2.2E-09 69.1 1.5 31 60-90 4-37 (184)
152 2ewv_A Twitching motility prot 97.3 0.00061 2.1E-08 69.7 8.9 80 49-128 126-219 (372)
153 2eyu_A Twitching motility prot 97.2 0.00018 6.3E-09 69.8 4.4 71 57-128 23-108 (261)
154 3e1s_A Exodeoxyribonuclease V, 97.2 0.00056 1.9E-08 74.0 8.2 34 60-93 205-241 (574)
155 1g5t_A COB(I)alamin adenosyltr 97.2 0.0029 9.8E-08 58.2 11.8 31 60-90 29-62 (196)
156 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00081 2.8E-08 65.1 8.6 39 59-97 4-45 (260)
157 3kb2_A SPBC2 prophage-derived 97.2 0.00022 7.5E-09 63.9 4.2 31 61-91 3-33 (173)
158 3bh0_A DNAB-like replicative h 97.2 0.00089 3E-08 66.8 9.0 39 55-93 64-105 (315)
159 3dm5_A SRP54, signal recogniti 97.2 0.0017 6E-08 67.4 11.3 73 58-130 99-194 (443)
160 1kag_A SKI, shikimate kinase I 97.2 0.00026 8.9E-09 63.6 4.4 30 59-88 4-33 (173)
161 2ius_A DNA translocase FTSK; n 97.2 0.0027 9.3E-08 67.3 12.7 76 118-214 296-374 (512)
162 3iij_A Coilin-interacting nucl 97.2 0.00032 1.1E-08 63.6 4.9 33 58-90 10-42 (180)
163 1y63_A LMAJ004144AAA protein; 97.2 0.00021 7.1E-09 65.4 3.6 31 59-89 10-41 (184)
164 1via_A Shikimate kinase; struc 97.1 0.00026 9E-09 63.9 4.1 29 61-89 6-34 (175)
165 2iyv_A Shikimate kinase, SK; t 97.1 0.00031 1.1E-08 63.9 4.6 29 61-89 4-32 (184)
166 1zuh_A Shikimate kinase; alpha 97.1 0.00034 1.1E-08 62.7 4.8 31 60-90 8-38 (168)
167 3gfo_A Cobalt import ATP-bindi 97.1 0.00046 1.6E-08 67.5 6.0 28 56-83 31-58 (275)
168 3rlf_A Maltose/maltodextrin im 97.1 0.00019 6.7E-09 73.2 3.5 27 57-83 27-53 (381)
169 2b8t_A Thymidine kinase; deoxy 97.1 0.0004 1.4E-08 65.6 5.3 70 60-130 13-101 (223)
170 2cdn_A Adenylate kinase; phosp 97.1 0.00047 1.6E-08 63.8 5.4 33 58-90 19-51 (201)
171 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00039 1.3E-08 70.5 4.8 27 57-83 28-54 (359)
172 4g1u_C Hemin import ATP-bindin 97.1 0.00045 1.5E-08 67.3 5.1 28 56-83 34-61 (266)
173 2fz4_A DNA repair protein RAD2 97.1 0.0025 8.6E-08 60.7 10.2 37 61-97 110-147 (237)
174 2ze6_A Isopentenyl transferase 97.0 0.00036 1.2E-08 67.4 4.3 32 61-92 3-34 (253)
175 1tev_A UMP-CMP kinase; ploop, 97.0 0.00044 1.5E-08 63.2 4.4 36 59-96 3-38 (196)
176 3tui_C Methionine import ATP-b 97.0 0.00046 1.6E-08 70.0 4.7 28 56-83 51-78 (366)
177 3t61_A Gluconokinase; PSI-biol 97.0 0.00055 1.9E-08 63.3 4.9 31 59-89 18-48 (202)
178 1aky_A Adenylate kinase; ATP:A 97.0 0.00051 1.7E-08 64.6 4.7 33 58-90 3-35 (220)
179 2pez_A Bifunctional 3'-phospho 97.0 0.00059 2E-08 61.8 4.9 37 58-94 4-43 (179)
180 3umf_A Adenylate kinase; rossm 97.0 0.00046 1.6E-08 65.0 4.1 39 56-96 26-64 (217)
181 1qf9_A UMP/CMP kinase, protein 97.0 0.00054 1.8E-08 62.5 4.6 33 58-90 5-37 (194)
182 3cm0_A Adenylate kinase; ATP-b 97.0 0.00042 1.4E-08 63.1 3.7 31 59-89 4-34 (186)
183 1ly1_A Polynucleotide kinase; 97.0 0.00038 1.3E-08 62.8 3.5 33 59-93 2-35 (181)
184 3lw7_A Adenylate kinase relate 97.0 0.00049 1.7E-08 61.5 4.1 29 61-90 3-31 (179)
185 2c95_A Adenylate kinase 1; tra 97.0 0.00054 1.8E-08 62.8 4.4 33 58-90 8-40 (196)
186 2vli_A Antibiotic resistance p 96.9 0.00041 1.4E-08 62.9 3.5 30 59-88 5-34 (183)
187 1e6c_A Shikimate kinase; phosp 96.9 0.00053 1.8E-08 61.5 4.1 30 60-89 3-32 (173)
188 1g41_A Heat shock protein HSLU 96.9 0.0068 2.3E-07 63.0 13.0 83 120-214 252-346 (444)
189 3kl4_A SRP54, signal recogniti 96.9 0.0026 9E-08 66.0 9.9 73 58-130 96-191 (433)
190 4eun_A Thermoresistant glucoki 96.9 0.00065 2.2E-08 62.9 4.7 36 58-95 28-63 (200)
191 2yyz_A Sugar ABC transporter, 96.9 0.00051 1.8E-08 69.7 4.2 27 57-83 27-53 (359)
192 1vpl_A ABC transporter, ATP-bi 96.9 0.0021 7.2E-08 62.1 8.4 28 56-83 38-65 (256)
193 1v43_A Sugar-binding transport 96.9 0.00051 1.8E-08 70.0 4.2 27 57-83 35-61 (372)
194 1knq_A Gluconate kinase; ALFA/ 96.9 0.00066 2.2E-08 61.2 4.5 35 59-95 8-42 (175)
195 2it1_A 362AA long hypothetical 96.9 0.00053 1.8E-08 69.7 4.2 27 57-83 27-53 (362)
196 1zd8_A GTP:AMP phosphotransfer 96.9 0.00056 1.9E-08 64.7 4.2 33 58-90 6-38 (227)
197 3dl0_A Adenylate kinase; phosp 96.9 0.00067 2.3E-08 63.5 4.5 30 61-90 2-31 (216)
198 3be4_A Adenylate kinase; malar 96.9 0.00056 1.9E-08 64.2 3.9 31 60-90 6-36 (217)
199 2ixe_A Antigen peptide transpo 96.9 0.001 3.5E-08 64.9 5.8 28 56-83 42-69 (271)
200 1kht_A Adenylate kinase; phosp 96.9 0.00058 2E-08 62.2 3.8 25 60-84 4-28 (192)
201 3tlx_A Adenylate kinase 2; str 96.9 0.00072 2.5E-08 64.8 4.7 34 57-90 27-60 (243)
202 1z47_A CYSA, putative ABC-tran 96.9 0.00046 1.6E-08 69.9 3.4 27 57-83 39-65 (355)
203 2pt5_A Shikimate kinase, SK; a 96.9 0.00077 2.6E-08 60.2 4.5 29 61-89 2-30 (168)
204 3fb4_A Adenylate kinase; psych 96.9 0.00071 2.4E-08 63.2 4.5 30 61-90 2-31 (216)
205 1ex7_A Guanylate kinase; subst 96.9 0.001 3.5E-08 61.0 5.3 24 60-83 2-25 (186)
206 1ak2_A Adenylate kinase isoenz 96.9 0.0008 2.7E-08 63.9 4.8 32 59-90 16-47 (233)
207 1tf7_A KAIC; homohexamer, hexa 96.9 0.0066 2.3E-07 64.9 12.5 76 55-130 277-383 (525)
208 2bwj_A Adenylate kinase 5; pho 96.8 0.00068 2.3E-08 62.3 4.1 36 59-96 12-47 (199)
209 3cmw_A Protein RECA, recombina 96.8 0.0011 3.6E-08 79.4 6.7 77 58-134 1430-1525(1706)
210 2pcj_A ABC transporter, lipopr 96.8 0.0023 7.7E-08 60.5 7.8 28 56-83 27-54 (224)
211 4a1f_A DNAB helicase, replicat 96.8 0.00046 1.6E-08 69.4 2.9 38 55-92 42-82 (338)
212 1ukz_A Uridylate kinase; trans 96.8 0.00088 3E-08 61.9 4.6 33 58-90 14-46 (203)
213 3uie_A Adenylyl-sulfate kinase 96.8 0.001 3.5E-08 61.5 5.0 39 57-95 23-64 (200)
214 3d31_A Sulfate/molybdate ABC t 96.8 0.0007 2.4E-08 68.4 4.1 27 57-83 24-50 (348)
215 1zak_A Adenylate kinase; ATP:A 96.8 0.00066 2.2E-08 63.9 3.4 31 58-88 4-34 (222)
216 2olj_A Amino acid ABC transpor 96.8 0.0044 1.5E-07 60.1 9.3 28 56-83 47-74 (263)
217 3sr0_A Adenylate kinase; phosp 96.8 0.00087 3E-08 62.6 4.1 34 61-96 2-35 (206)
218 2px0_A Flagellar biosynthesis 96.7 0.0089 3E-07 58.9 11.4 37 58-94 104-144 (296)
219 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.0004 1.4E-08 69.8 1.5 72 58-129 170-251 (330)
220 3crm_A TRNA delta(2)-isopenten 96.7 0.0011 3.7E-08 66.1 4.5 35 59-93 5-39 (323)
221 2v54_A DTMP kinase, thymidylat 96.7 0.0014 4.7E-08 60.5 4.9 34 59-92 4-38 (204)
222 2pbr_A DTMP kinase, thymidylat 96.7 0.0014 4.9E-08 59.7 4.9 31 61-91 2-35 (195)
223 1vt4_I APAF-1 related killer D 96.7 0.013 4.3E-07 66.9 13.2 43 29-82 131-173 (1221)
224 1g29_1 MALK, maltose transport 96.7 0.0013 4.5E-08 67.1 4.9 27 57-83 27-53 (372)
225 1q57_A DNA primase/helicase; d 96.7 0.0027 9.4E-08 67.5 7.6 39 55-93 238-280 (503)
226 3nh6_A ATP-binding cassette SU 96.6 0.0039 1.3E-07 61.8 8.0 28 56-83 77-104 (306)
227 3thx_B DNA mismatch repair pro 96.6 0.005 1.7E-07 69.8 9.8 25 57-81 671-695 (918)
228 1nks_A Adenylate kinase; therm 96.6 0.001 3.6E-08 60.5 3.6 34 61-94 3-39 (194)
229 1e4v_A Adenylate kinase; trans 96.6 0.0012 4.1E-08 61.7 4.1 30 61-90 2-31 (214)
230 1cke_A CK, MSSA, protein (cyti 96.6 0.0014 4.6E-08 61.7 4.5 30 60-89 6-35 (227)
231 3bgw_A DNAB-like replicative h 96.6 0.0023 7.8E-08 67.0 6.4 39 55-93 193-234 (444)
232 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00076 2.6E-08 67.9 2.5 30 60-89 25-54 (359)
233 1m7g_A Adenylylsulfate kinase; 96.6 0.005 1.7E-07 57.3 8.1 39 57-95 23-65 (211)
234 1w4r_A Thymidine kinase; type 96.6 0.004 1.4E-07 57.2 7.1 70 59-130 20-103 (195)
235 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.5E-08 60.5 3.9 29 61-89 2-30 (205)
236 3nwj_A ATSK2; P loop, shikimat 96.5 0.0011 3.6E-08 64.0 3.2 32 59-90 48-79 (250)
237 2xb4_A Adenylate kinase; ATP-b 96.5 0.0015 5E-08 61.7 4.1 29 61-89 2-30 (223)
238 2z0h_A DTMP kinase, thymidylat 96.5 0.0019 6.5E-08 59.1 4.8 31 62-92 3-36 (197)
239 1tf7_A KAIC; homohexamer, hexa 96.5 0.0087 3E-07 64.0 10.6 39 56-94 36-78 (525)
240 2if2_A Dephospho-COA kinase; a 96.5 0.0015 5E-08 60.4 3.7 29 61-90 3-31 (204)
241 3r20_A Cytidylate kinase; stru 96.5 0.002 6.8E-08 61.2 4.5 31 59-89 9-39 (233)
242 2bbw_A Adenylate kinase 4, AK4 96.5 0.0021 7E-08 61.5 4.6 31 58-88 26-56 (246)
243 2qor_A Guanylate kinase; phosp 96.5 0.0024 8.3E-08 59.1 5.0 28 57-84 10-37 (204)
244 1p9r_A General secretion pathw 96.4 0.0069 2.4E-07 62.7 8.7 69 60-128 168-246 (418)
245 1uj2_A Uridine-cytidine kinase 96.4 0.0028 9.4E-08 60.9 5.2 40 58-97 21-68 (252)
246 1jjv_A Dephospho-COA kinase; P 96.4 0.0018 6.1E-08 60.0 3.7 32 61-95 4-35 (206)
247 3ake_A Cytidylate kinase; CMP 96.4 0.0023 7.9E-08 59.1 4.4 30 61-90 4-33 (208)
248 2plr_A DTMP kinase, probable t 96.4 0.0031 1.1E-07 58.3 5.3 32 59-90 4-37 (213)
249 2grj_A Dephospho-COA kinase; T 96.4 0.0041 1.4E-07 57.3 6.0 38 61-100 14-51 (192)
250 3tau_A Guanylate kinase, GMP k 96.4 0.0025 8.6E-08 59.3 4.5 27 58-84 7-33 (208)
251 1uf9_A TT1252 protein; P-loop, 96.3 0.0028 9.5E-08 58.3 4.6 36 59-97 8-43 (203)
252 3llm_A ATP-dependent RNA helic 96.3 0.019 6.5E-07 54.3 10.6 22 59-80 76-97 (235)
253 1oxx_K GLCV, glucose, ABC tran 96.3 0.0091 3.1E-07 60.4 8.7 27 57-83 29-55 (353)
254 1w36_D RECD, exodeoxyribonucle 96.3 0.013 4.3E-07 63.9 10.4 25 59-83 164-188 (608)
255 2yvu_A Probable adenylyl-sulfa 96.3 0.0036 1.2E-07 56.9 5.2 37 58-94 12-51 (186)
256 3a8t_A Adenylate isopentenyltr 96.3 0.0019 6.4E-08 64.6 3.4 35 59-93 40-74 (339)
257 3c8u_A Fructokinase; YP_612366 96.3 0.0064 2.2E-07 56.4 6.9 28 57-84 20-47 (208)
258 3qf4_B Uncharacterized ABC tra 96.3 0.012 4.1E-07 64.0 10.0 28 56-83 378-405 (598)
259 1kgd_A CASK, peripheral plasma 96.3 0.0027 9.3E-08 57.6 4.1 26 59-84 5-30 (180)
260 2wwf_A Thymidilate kinase, put 96.3 0.0012 4.2E-08 61.2 1.8 29 58-86 9-37 (212)
261 3thx_A DNA mismatch repair pro 96.3 0.0091 3.1E-07 67.9 9.2 23 59-81 662-684 (934)
262 4a82_A Cystic fibrosis transme 96.3 0.0081 2.8E-07 65.0 8.5 28 56-83 364-391 (578)
263 4e22_A Cytidylate kinase; P-lo 96.3 0.0033 1.1E-07 60.5 4.8 30 59-88 27-56 (252)
264 3foz_A TRNA delta(2)-isopenten 96.3 0.0026 9E-08 62.7 4.2 36 58-93 9-44 (316)
265 2j41_A Guanylate kinase; GMP, 96.2 0.0027 9.1E-08 58.6 3.8 27 57-83 4-30 (207)
266 2yhs_A FTSY, cell division pro 96.2 0.04 1.4E-06 57.9 13.1 28 56-83 290-317 (503)
267 3b6e_A Interferon-induced heli 96.2 0.032 1.1E-06 51.3 11.3 24 60-83 49-72 (216)
268 1nn5_A Similar to deoxythymidy 96.2 0.0015 5.1E-08 60.7 1.9 27 58-84 8-34 (215)
269 1vht_A Dephospho-COA kinase; s 96.2 0.0038 1.3E-07 58.4 4.6 30 59-89 4-33 (218)
270 3gd7_A Fusion complex of cysti 96.1 0.0095 3.3E-07 61.0 7.7 27 56-82 44-70 (390)
271 2qt1_A Nicotinamide riboside k 96.1 0.0028 9.6E-08 58.7 3.2 31 58-88 20-51 (207)
272 1q3t_A Cytidylate kinase; nucl 96.1 0.0045 1.5E-07 58.7 4.8 32 58-89 15-46 (236)
273 3tr0_A Guanylate kinase, GMP k 96.1 0.0037 1.3E-07 57.5 4.0 26 58-83 6-31 (205)
274 1htw_A HI0065; nucleotide-bind 96.1 0.0041 1.4E-07 55.3 4.1 28 56-83 30-57 (158)
275 2gxq_A Heat resistant RNA depe 96.1 0.063 2.2E-06 49.1 12.5 24 59-82 38-62 (207)
276 3qf4_A ABC transporter, ATP-bi 96.0 0.013 4.5E-07 63.5 8.7 28 56-83 366-393 (587)
277 2h92_A Cytidylate kinase; ross 96.0 0.0048 1.6E-07 57.6 4.5 31 60-90 4-34 (219)
278 3zvl_A Bifunctional polynucleo 96.0 0.0061 2.1E-07 63.2 5.6 36 58-95 257-292 (416)
279 3b5x_A Lipid A export ATP-bind 96.0 0.024 8.3E-07 61.3 10.4 28 56-83 366-393 (582)
280 3exa_A TRNA delta(2)-isopenten 95.9 0.0043 1.5E-07 61.3 3.9 32 60-91 4-35 (322)
281 2qmh_A HPR kinase/phosphorylas 95.9 0.0039 1.3E-07 57.4 3.3 31 59-90 34-64 (205)
282 2axn_A 6-phosphofructo-2-kinas 95.9 0.018 6.3E-07 61.3 9.0 41 58-98 34-77 (520)
283 3ozx_A RNAse L inhibitor; ATP 95.9 0.0069 2.4E-07 64.9 5.7 27 57-83 292-318 (538)
284 3asz_A Uridine kinase; cytidin 95.9 0.0038 1.3E-07 57.9 3.2 27 58-84 5-31 (211)
285 1rz3_A Hypothetical protein rb 95.9 0.0081 2.8E-07 55.5 5.5 38 57-94 20-60 (201)
286 2oap_1 GSPE-2, type II secreti 95.9 0.0038 1.3E-07 66.4 3.6 71 58-128 259-343 (511)
287 1ltq_A Polynucleotide kinase; 95.9 0.0043 1.5E-07 61.1 3.7 28 59-86 2-30 (301)
288 3e70_C DPA, signal recognition 95.9 0.02 7E-07 57.2 8.6 27 57-83 127-153 (328)
289 3d3q_A TRNA delta(2)-isopenten 95.9 0.0042 1.4E-07 62.3 3.5 32 60-91 8-39 (340)
290 4f4c_A Multidrug resistance pr 95.9 0.016 5.6E-07 68.7 9.1 29 56-84 441-469 (1321)
291 2bdt_A BH3686; alpha-beta prot 95.9 0.0056 1.9E-07 55.7 4.1 34 61-95 4-37 (189)
292 1zu4_A FTSY; GTPase, signal re 95.9 0.015 5.2E-07 57.9 7.6 37 57-93 103-142 (320)
293 1lvg_A Guanylate kinase, GMP k 95.8 0.0046 1.6E-07 57.1 3.4 27 58-84 3-29 (198)
294 1z6g_A Guanylate kinase; struc 95.8 0.0049 1.7E-07 57.8 3.7 27 57-83 21-47 (218)
295 3a00_A Guanylate kinase, GMP k 95.8 0.005 1.7E-07 56.1 3.6 25 60-84 2-26 (186)
296 2f6r_A COA synthase, bifunctio 95.8 0.0054 1.8E-07 60.0 4.0 35 59-96 75-109 (281)
297 1wb9_A DNA mismatch repair pro 95.8 0.03 1E-06 62.8 10.3 25 58-82 606-630 (800)
298 1x6v_B Bifunctional 3'-phospho 95.8 0.013 4.6E-07 63.5 7.3 38 58-95 51-91 (630)
299 1ls1_A Signal recognition part 95.8 0.036 1.2E-06 54.5 9.9 73 58-130 97-192 (295)
300 3b60_A Lipid A export ATP-bind 95.8 0.022 7.4E-07 61.7 9.0 28 56-83 366-393 (582)
301 4b3f_X DNA-binding protein smu 95.7 0.053 1.8E-06 59.4 12.1 34 61-94 207-243 (646)
302 2v3c_C SRP54, signal recogniti 95.7 0.014 4.7E-07 60.8 6.7 36 58-93 98-136 (432)
303 2v9p_A Replication protein E1; 95.7 0.0067 2.3E-07 60.0 4.1 30 55-84 122-151 (305)
304 2ffh_A Protein (FFH); SRP54, s 95.6 0.067 2.3E-06 55.3 11.6 72 58-129 97-191 (425)
305 1t6n_A Probable ATP-dependent 95.6 0.16 5.5E-06 46.9 13.3 58 23-82 14-74 (220)
306 3fdi_A Uncharacterized protein 95.6 0.0075 2.6E-07 55.9 4.0 29 61-89 8-36 (201)
307 1znw_A Guanylate kinase, GMP k 95.6 0.0072 2.5E-07 56.1 3.9 29 56-84 17-45 (207)
308 1c9k_A COBU, adenosylcobinamid 95.6 0.0071 2.4E-07 54.9 3.6 32 62-94 2-33 (180)
309 3ney_A 55 kDa erythrocyte memb 95.6 0.0087 3E-07 55.2 4.2 27 58-84 18-44 (197)
310 3b9q_A Chloroplast SRP recepto 95.6 0.015 5.2E-07 57.4 6.3 28 56-83 97-124 (302)
311 3lnc_A Guanylate kinase, GMP k 95.6 0.0052 1.8E-07 58.0 2.8 27 57-83 25-52 (231)
312 2jeo_A Uridine-cytidine kinase 95.6 0.0075 2.6E-07 57.6 3.9 29 58-86 24-52 (245)
313 2xxa_A Signal recognition part 95.5 0.032 1.1E-06 58.0 8.8 73 57-129 98-194 (433)
314 3eph_A TRNA isopentenyltransfe 95.5 0.0066 2.3E-07 62.1 3.5 33 59-91 2-34 (409)
315 1j8m_F SRP54, signal recogniti 95.5 0.026 8.9E-07 55.6 7.7 72 59-130 98-192 (297)
316 1s96_A Guanylate kinase, GMP k 95.5 0.0087 3E-07 56.2 4.0 28 57-84 14-41 (219)
317 1qde_A EIF4A, translation init 95.5 0.11 3.7E-06 48.2 11.7 59 21-81 12-74 (224)
318 2xau_A PRE-mRNA-splicing facto 95.5 0.031 1.1E-06 62.6 9.0 24 59-82 109-132 (773)
319 2j37_W Signal recognition part 95.4 0.047 1.6E-06 57.7 9.8 36 57-92 99-137 (504)
320 2gza_A Type IV secretion syste 95.3 0.019 6.5E-07 58.2 6.1 72 57-128 173-262 (361)
321 2og2_A Putative signal recogni 95.3 0.021 7E-07 57.8 6.1 28 56-83 154-181 (359)
322 1odf_A YGR205W, hypothetical 3 95.2 0.011 3.7E-07 58.1 3.9 28 57-84 29-56 (290)
323 1xx6_A Thymidine kinase; NESG, 95.2 0.016 5.6E-07 53.1 4.8 71 59-130 8-93 (191)
324 3p32_A Probable GTPase RV1496/ 95.2 0.11 3.7E-06 52.4 11.4 33 59-91 79-114 (355)
325 2o8b_B DNA mismatch repair pro 95.2 0.068 2.3E-06 61.5 10.8 22 59-80 789-810 (1022)
326 3ice_A Transcription terminati 95.2 0.11 3.6E-06 52.8 10.8 27 57-83 172-198 (422)
327 3gmt_A Adenylate kinase; ssgci 95.1 0.015 5.3E-07 54.8 4.3 30 61-90 10-39 (230)
328 1a7j_A Phosphoribulokinase; tr 95.1 0.01 3.5E-07 58.3 3.1 37 60-96 6-45 (290)
329 4eaq_A DTMP kinase, thymidylat 95.0 0.022 7.7E-07 53.7 5.3 33 58-90 25-59 (229)
330 1ewq_A DNA mismatch repair pro 95.0 0.055 1.9E-06 60.2 9.2 24 59-82 576-599 (765)
331 3tif_A Uncharacterized ABC tra 95.0 0.0079 2.7E-07 57.2 2.0 29 56-84 28-56 (235)
332 3bor_A Human initiation factor 95.0 0.1 3.6E-06 49.1 9.9 55 21-77 28-85 (237)
333 3tqf_A HPR(Ser) kinase; transf 95.0 0.016 5.4E-07 52.0 3.8 25 58-82 15-39 (181)
334 2pl3_A Probable ATP-dependent 95.0 0.18 6E-06 47.3 11.4 54 22-77 24-80 (236)
335 3j16_B RLI1P; ribosome recycli 95.0 0.0088 3E-07 64.9 2.5 22 62-83 381-402 (608)
336 2cbz_A Multidrug resistance-as 94.9 0.0087 3E-07 57.0 2.0 28 56-83 28-55 (237)
337 3bk7_A ABC transporter ATP-bin 94.9 0.02 6.8E-07 62.2 5.0 108 53-181 376-531 (607)
338 3j16_B RLI1P; ribosome recycli 94.9 0.076 2.6E-06 57.6 9.6 26 58-83 102-127 (608)
339 1hv8_A Putative ATP-dependent 94.8 0.11 3.8E-06 51.7 10.1 68 23-92 6-82 (367)
340 3g5u_A MCG1178, multidrug resi 94.8 0.037 1.3E-06 65.5 7.4 28 56-83 413-440 (1284)
341 1gtv_A TMK, thymidylate kinase 94.8 0.0074 2.5E-07 55.9 1.2 24 61-84 2-25 (214)
342 3tqc_A Pantothenate kinase; bi 94.8 0.032 1.1E-06 55.5 5.8 38 58-95 91-133 (321)
343 2qm8_A GTPase/ATPase; G protei 94.8 0.09 3.1E-06 52.7 9.1 27 57-83 53-79 (337)
344 1m8p_A Sulfate adenylyltransfe 94.8 0.051 1.8E-06 58.5 7.8 39 59-97 396-438 (573)
345 2i3b_A HCR-ntpase, human cance 94.7 0.018 6.2E-07 52.7 3.7 23 61-83 3-25 (189)
346 3aez_A Pantothenate kinase; tr 94.7 0.019 6.5E-07 57.0 4.1 28 57-84 88-115 (312)
347 1b0u_A Histidine permease; ABC 94.7 0.011 3.6E-07 57.3 2.1 29 56-84 29-57 (262)
348 3hdt_A Putative kinase; struct 94.7 0.017 5.9E-07 54.3 3.5 30 60-89 15-44 (223)
349 2z0m_A 337AA long hypothetical 94.7 0.12 4.1E-06 50.8 10.0 34 60-93 32-65 (337)
350 2onk_A Molybdate/tungstate ABC 94.7 0.012 4.3E-07 56.0 2.4 28 56-84 22-49 (240)
351 3iuy_A Probable ATP-dependent 94.6 0.19 6.3E-06 46.8 10.6 56 20-77 16-75 (228)
352 1mv5_A LMRA, multidrug resista 94.6 0.011 3.7E-07 56.5 1.9 28 56-83 25-52 (243)
353 1np6_A Molybdopterin-guanine d 94.6 0.023 7.7E-07 51.3 3.9 25 59-83 6-30 (174)
354 1vec_A ATP-dependent RNA helic 94.6 0.3 1E-05 44.4 11.8 19 59-77 40-58 (206)
355 1sgw_A Putative ABC transporte 94.6 0.01 3.5E-07 55.6 1.5 28 56-83 32-59 (214)
356 1g6h_A High-affinity branched- 94.6 0.011 3.7E-07 57.0 1.8 28 57-84 31-58 (257)
357 1sq5_A Pantothenate kinase; P- 94.5 0.036 1.2E-06 54.9 5.5 28 57-84 78-105 (308)
358 2zu0_C Probable ATP-dependent 94.5 0.014 5E-07 56.5 2.6 28 56-83 43-70 (267)
359 4f4c_A Multidrug resistance pr 94.5 0.053 1.8E-06 64.4 7.8 28 56-83 1102-1129(1321)
360 2ged_A SR-beta, signal recogni 94.5 0.038 1.3E-06 49.9 5.3 47 31-83 26-72 (193)
361 2j9r_A Thymidine kinase; TK1, 94.5 0.091 3.1E-06 48.9 7.8 31 61-91 30-63 (214)
362 2ghi_A Transport protein; mult 94.5 0.012 4.2E-07 56.7 2.0 29 56-84 43-71 (260)
363 1bif_A 6-phosphofructo-2-kinas 94.5 0.089 3.1E-06 55.2 8.8 38 58-95 38-78 (469)
364 1sky_E F1-ATPase, F1-ATP synth 94.5 0.046 1.6E-06 57.0 6.4 25 59-83 151-175 (473)
365 2pze_A Cystic fibrosis transme 94.5 0.012 3.9E-07 55.8 1.7 28 56-83 31-58 (229)
366 2zj8_A DNA helicase, putative 94.5 0.14 4.8E-06 56.8 10.8 35 58-92 38-76 (720)
367 2d2e_A SUFC protein; ABC-ATPas 94.5 0.013 4.6E-07 56.1 2.2 27 56-82 26-52 (250)
368 1rj9_A FTSY, signal recognitio 94.5 0.023 8E-07 56.1 3.9 26 58-83 101-126 (304)
369 3dz8_A RAS-related protein RAB 94.4 0.11 3.6E-06 46.9 8.1 23 61-83 25-47 (191)
370 2ff7_A Alpha-hemolysin translo 94.4 0.012 4.1E-07 56.4 1.7 29 56-84 32-60 (247)
371 3cr8_A Sulfate adenylyltranfer 94.4 0.056 1.9E-06 57.9 7.0 41 57-97 367-411 (552)
372 1ji0_A ABC transporter; ATP bi 94.4 0.012 4.1E-07 56.1 1.7 28 57-84 30-57 (240)
373 2p6r_A Afuhel308 helicase; pro 94.4 0.079 2.7E-06 58.6 8.5 35 59-93 40-77 (702)
374 2qi9_C Vitamin B12 import ATP- 94.4 0.013 4.3E-07 56.3 1.7 29 56-84 23-51 (249)
375 3q72_A GTP-binding protein RAD 94.4 0.024 8.2E-07 49.6 3.4 21 61-81 4-24 (166)
376 2iw3_A Elongation factor 3A; a 94.4 0.063 2.1E-06 61.1 7.6 25 57-81 459-483 (986)
377 3ly5_A ATP-dependent RNA helic 94.3 0.18 6E-06 48.4 9.9 18 60-77 92-109 (262)
378 1xti_A Probable ATP-dependent 94.3 0.3 1E-05 49.1 12.2 69 23-93 8-85 (391)
379 2yz2_A Putative ABC transporte 94.3 0.014 4.9E-07 56.5 2.0 28 56-83 30-57 (266)
380 3pey_A ATP-dependent RNA helic 94.3 0.2 6.7E-06 50.4 10.6 21 59-79 44-64 (395)
381 3lxw_A GTPase IMAP family memb 94.3 0.34 1.2E-05 46.0 11.6 25 59-83 21-45 (247)
382 3b85_A Phosphate starvation-in 94.3 0.021 7.1E-07 53.2 2.9 24 59-82 22-45 (208)
383 3ozx_A RNAse L inhibitor; ATP 94.2 0.12 4.1E-06 55.2 9.1 24 60-83 26-49 (538)
384 2ihy_A ABC transporter, ATP-bi 94.2 0.014 4.8E-07 57.0 1.7 29 56-84 44-72 (279)
385 3vkw_A Replicase large subunit 94.2 0.12 4E-06 53.6 8.6 33 58-92 160-192 (446)
386 1xjc_A MOBB protein homolog; s 94.2 0.031 1.1E-06 50.1 3.8 32 60-91 5-39 (169)
387 2nq2_C Hypothetical ABC transp 94.2 0.014 4.9E-07 56.0 1.6 29 56-84 28-56 (253)
388 3kta_A Chromosome segregation 94.1 0.03 1E-06 50.4 3.6 24 61-84 28-51 (182)
389 3t1o_A Gliding protein MGLA; G 94.1 0.13 4.3E-06 46.2 7.8 23 61-83 16-38 (198)
390 3dkp_A Probable ATP-dependent 94.1 0.31 1.1E-05 45.8 10.9 18 59-76 66-83 (245)
391 1wp9_A ATP-dependent RNA helic 94.0 0.15 5E-06 52.7 9.2 33 61-93 25-61 (494)
392 2ocp_A DGK, deoxyguanosine kin 93.9 0.036 1.2E-06 52.5 3.9 26 59-84 2-27 (241)
393 3ber_A Probable ATP-dependent 93.9 0.44 1.5E-05 45.1 11.7 53 23-77 43-98 (249)
394 2oxc_A Probable ATP-dependent 93.9 0.15 5E-06 47.8 8.1 54 21-76 22-78 (230)
395 2fwr_A DNA repair protein RAD2 93.9 0.096 3.3E-06 54.7 7.5 39 60-98 109-148 (472)
396 2p67_A LAO/AO transport system 93.9 0.13 4.6E-06 51.5 8.2 27 57-83 54-80 (341)
397 2va8_A SSO2462, SKI2-type heli 93.9 0.2 7E-06 55.3 10.5 36 57-92 44-83 (715)
398 1p5z_B DCK, deoxycytidine kina 93.8 0.017 5.9E-07 55.6 1.4 27 58-84 23-49 (263)
399 3fe2_A Probable ATP-dependent 93.8 0.48 1.6E-05 44.5 11.5 56 20-77 26-84 (242)
400 3tbk_A RIG-I helicase domain; 93.8 0.33 1.1E-05 51.3 11.6 34 60-93 20-61 (555)
401 2orv_A Thymidine kinase; TP4A 93.8 0.26 8.8E-06 46.3 9.3 32 60-91 20-54 (234)
402 2pjz_A Hypothetical protein ST 93.6 0.023 7.9E-07 54.9 1.9 25 59-83 30-54 (263)
403 4a2p_A RIG-I, retinoic acid in 93.6 0.38 1.3E-05 50.9 11.7 34 60-93 23-64 (556)
404 4edh_A DTMP kinase, thymidylat 93.6 0.073 2.5E-06 49.6 5.2 33 59-91 6-41 (213)
405 2bbs_A Cystic fibrosis transme 93.5 0.022 7.6E-07 55.9 1.7 28 56-83 61-88 (290)
406 3sop_A Neuronal-specific septi 93.5 0.035 1.2E-06 53.9 3.0 23 61-83 4-26 (270)
407 2f9l_A RAB11B, member RAS onco 93.5 0.041 1.4E-06 50.2 3.3 23 61-83 7-29 (199)
408 1oix_A RAS-related protein RAB 93.4 0.038 1.3E-06 50.2 3.0 23 61-83 31-53 (191)
409 1s2m_A Putative ATP-dependent 93.4 0.37 1.3E-05 48.7 10.8 58 21-80 19-79 (400)
410 3g5u_A MCG1178, multidrug resi 93.4 0.1 3.6E-06 61.7 7.4 27 57-83 1057-1083(1284)
411 2f7s_A C25KG, RAS-related prot 93.4 0.27 9.2E-06 45.1 8.9 22 61-82 27-48 (217)
412 3l9o_A ATP-dependent RNA helic 93.4 0.16 5.5E-06 59.0 8.9 34 60-93 200-236 (1108)
413 3sqw_A ATP-dependent RNA helic 93.4 0.29 1E-05 52.6 10.5 18 58-75 59-76 (579)
414 3eiq_A Eukaryotic initiation f 93.4 0.35 1.2E-05 49.0 10.6 20 59-78 77-96 (414)
415 1q0u_A Bstdead; DEAD protein, 93.4 0.42 1.4E-05 44.1 10.2 18 60-77 42-59 (219)
416 3v9p_A DTMP kinase, thymidylat 93.4 0.07 2.4E-06 50.3 4.8 33 59-91 25-64 (227)
417 1fuu_A Yeast initiation factor 93.4 0.25 8.4E-06 49.8 9.3 72 20-93 18-98 (394)
418 2f1r_A Molybdopterin-guanine d 93.3 0.028 9.5E-07 50.6 1.9 24 61-84 4-27 (171)
419 1lw7_A Transcriptional regulat 93.3 0.045 1.6E-06 55.4 3.7 28 59-86 170-197 (365)
420 4i1u_A Dephospho-COA kinase; s 93.2 0.06 2.1E-06 50.0 4.0 35 61-98 11-45 (210)
421 2gks_A Bifunctional SAT/APS ki 93.2 0.16 5.6E-06 54.3 8.0 38 59-96 372-412 (546)
422 1g8f_A Sulfate adenylyltransfe 93.2 0.057 2E-06 57.1 4.3 27 59-85 395-421 (511)
423 3tmk_A Thymidylate kinase; pho 93.2 0.089 3E-06 49.1 5.2 32 59-90 5-36 (216)
424 3fmo_B ATP-dependent RNA helic 93.1 0.3 1E-05 47.9 9.2 53 22-76 91-148 (300)
425 2j0s_A ATP-dependent RNA helic 93.1 0.39 1.3E-05 48.8 10.5 58 21-80 35-95 (410)
426 2v6i_A RNA helicase; membrane, 93.1 0.34 1.2E-05 50.2 9.9 33 60-92 3-39 (431)
427 2fh5_B SR-beta, signal recogni 93.1 0.39 1.3E-05 43.9 9.4 25 59-83 7-31 (214)
428 2wsm_A Hydrogenase expression/ 93.1 0.085 2.9E-06 48.8 4.9 25 60-84 31-55 (221)
429 1wrb_A DJVLGB; RNA helicase, D 93.1 0.33 1.1E-05 45.9 9.2 18 60-77 61-78 (253)
430 2dyk_A GTP-binding protein; GT 93.0 0.057 1.9E-06 46.8 3.4 23 61-83 3-25 (161)
431 2www_A Methylmalonic aciduria 93.0 0.18 6.2E-06 50.7 7.5 25 59-83 74-98 (349)
432 1nrj_B SR-beta, signal recogni 92.9 0.07 2.4E-06 49.2 4.0 25 59-83 12-36 (218)
433 3i5x_A ATP-dependent RNA helic 92.8 0.96 3.3E-05 48.2 13.3 18 58-75 110-127 (563)
434 1z2a_A RAS-related protein RAB 92.7 0.061 2.1E-06 46.9 3.2 23 60-82 6-28 (168)
435 4hlc_A DTMP kinase, thymidylat 92.7 0.37 1.2E-05 44.5 8.6 31 61-91 4-36 (205)
436 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.05 1.7E-06 57.0 2.8 28 56-83 135-162 (460)
437 2vp4_A Deoxynucleoside kinase; 92.6 0.07 2.4E-06 50.2 3.6 32 58-90 19-50 (230)
438 1kao_A RAP2A; GTP-binding prot 92.6 0.069 2.4E-06 46.4 3.4 23 61-83 5-27 (167)
439 2wji_A Ferrous iron transport 92.6 0.065 2.2E-06 47.2 3.1 22 61-82 5-26 (165)
440 2gk6_A Regulator of nonsense t 92.6 0.066 2.3E-06 58.4 3.8 34 61-94 197-234 (624)
441 2zej_A Dardarin, leucine-rich 92.5 0.057 1.9E-06 48.5 2.7 22 61-82 4-25 (184)
442 2qag_B Septin-6, protein NEDD5 92.5 0.057 2E-06 55.7 3.0 26 57-82 38-65 (427)
443 1f2t_A RAD50 ABC-ATPase; DNA d 92.5 0.075 2.6E-06 46.5 3.4 23 61-83 25-47 (149)
444 3lv8_A DTMP kinase, thymidylat 92.5 0.074 2.5E-06 50.4 3.5 32 59-90 27-62 (236)
445 1ek0_A Protein (GTP-binding pr 92.4 0.076 2.6E-06 46.3 3.3 23 61-83 5-27 (170)
446 2hup_A RAS-related protein RAB 92.4 0.22 7.4E-06 45.4 6.5 22 61-82 31-52 (201)
447 1z0j_A RAB-22, RAS-related pro 92.4 0.077 2.6E-06 46.3 3.4 24 60-83 7-30 (170)
448 1fzq_A ADP-ribosylation factor 92.4 0.17 5.8E-06 45.2 5.7 24 59-82 16-39 (181)
449 1u8z_A RAS-related protein RAL 92.3 0.077 2.6E-06 46.1 3.3 24 60-83 5-28 (168)
450 2ce2_X GTPase HRAS; signaling 92.3 0.069 2.4E-06 46.3 2.9 23 61-83 5-27 (166)
451 2dpy_A FLII, flagellum-specifi 92.3 0.13 4.4E-06 53.5 5.4 31 57-87 155-185 (438)
452 1z08_A RAS-related protein RAB 92.2 0.082 2.8E-06 46.3 3.4 23 60-82 7-29 (170)
453 1wms_A RAB-9, RAB9, RAS-relate 92.2 0.081 2.8E-06 46.7 3.4 24 60-83 8-31 (177)
454 3ld9_A DTMP kinase, thymidylat 92.2 0.092 3.1E-06 49.3 3.8 28 58-85 20-47 (223)
455 2qtf_A Protein HFLX, GTP-bindi 92.2 0.68 2.3E-05 46.7 10.5 23 61-83 181-203 (364)
456 2obl_A ESCN; ATPase, hydrolase 92.2 0.11 3.7E-06 52.3 4.6 30 57-86 69-98 (347)
457 2nzj_A GTP-binding protein REM 92.2 0.079 2.7E-06 46.6 3.2 23 60-82 5-27 (175)
458 1upt_A ARL1, ADP-ribosylation 92.2 0.1 3.5E-06 45.6 3.9 25 58-82 6-30 (171)
459 3fmp_B ATP-dependent RNA helic 92.1 0.71 2.4E-05 48.1 11.1 57 23-81 92-154 (479)
460 1ky3_A GTP-binding protein YPT 92.1 0.085 2.9E-06 46.7 3.4 25 59-83 8-32 (182)
461 1pui_A ENGB, probable GTP-bind 92.1 0.057 2E-06 49.5 2.2 28 55-82 22-49 (210)
462 2wjg_A FEOB, ferrous iron tran 92.1 0.07 2.4E-06 47.8 2.8 22 61-82 9-30 (188)
463 1c1y_A RAS-related protein RAP 92.0 0.088 3E-06 45.8 3.3 22 61-82 5-26 (167)
464 1g16_A RAS-related protein SEC 92.0 0.077 2.6E-06 46.3 2.9 22 61-82 5-26 (170)
465 2xgj_A ATP-dependent RNA helic 92.0 0.7 2.4E-05 53.2 11.6 34 60-93 102-138 (1010)
466 1r2q_A RAS-related protein RAB 92.0 0.089 3.1E-06 45.9 3.3 22 61-82 8-29 (170)
467 2i4i_A ATP-dependent RNA helic 91.9 0.67 2.3E-05 47.0 10.4 53 21-75 13-68 (417)
468 4ag6_A VIRB4 ATPase, type IV s 91.9 0.17 5.8E-06 51.6 5.8 26 58-83 34-59 (392)
469 1r8s_A ADP-ribosylation factor 91.9 0.092 3.1E-06 45.7 3.3 22 61-82 2-23 (164)
470 1ko7_A HPR kinase/phosphatase; 91.9 0.1 3.4E-06 51.6 3.9 24 59-82 144-167 (314)
471 2erx_A GTP-binding protein DI- 91.9 0.078 2.7E-06 46.3 2.8 22 61-82 5-26 (172)
472 2lkc_A Translation initiation 91.9 0.1 3.4E-06 46.1 3.5 25 58-82 7-31 (178)
473 3q85_A GTP-binding protein REM 91.8 0.091 3.1E-06 46.0 3.1 21 61-81 4-24 (169)
474 3bc1_A RAS-related protein RAB 91.8 0.094 3.2E-06 46.9 3.3 23 60-82 12-34 (195)
475 3fht_A ATP-dependent RNA helic 91.8 0.88 3E-05 45.9 11.0 53 22-76 24-81 (412)
476 2db3_A ATP-dependent RNA helic 91.8 0.93 3.2E-05 46.7 11.3 53 21-75 54-109 (434)
477 2gj8_A MNME, tRNA modification 91.8 0.078 2.7E-06 47.2 2.6 23 60-82 5-27 (172)
478 2hxs_A RAB-26, RAS-related pro 91.7 0.091 3.1E-06 46.4 3.1 23 60-82 7-29 (178)
479 3ux8_A Excinuclease ABC, A sub 91.7 0.31 1E-05 53.6 7.8 20 57-76 42-61 (670)
480 4dsu_A GTPase KRAS, isoform 2B 91.6 0.1 3.5E-06 46.5 3.4 23 61-83 6-28 (189)
481 1z0f_A RAB14, member RAS oncog 91.6 0.1 3.5E-06 45.9 3.3 24 60-83 16-39 (179)
482 3con_A GTPase NRAS; structural 91.6 0.1 3.6E-06 46.8 3.3 23 61-83 23-45 (190)
483 2oil_A CATX-8, RAS-related pro 91.5 0.11 3.6E-06 46.9 3.3 24 60-83 26-49 (193)
484 2atv_A RERG, RAS-like estrogen 91.5 0.12 4.1E-06 46.7 3.7 25 58-82 27-51 (196)
485 1svi_A GTP-binding protein YSX 91.5 0.12 4.1E-06 46.5 3.6 25 58-82 22-46 (195)
486 2y8e_A RAB-protein 6, GH09086P 91.5 0.095 3.3E-06 46.2 2.9 22 61-82 16-37 (179)
487 2efe_B Small GTP-binding prote 91.5 0.11 3.8E-06 46.0 3.4 22 61-82 14-35 (181)
488 3fho_A ATP-dependent RNA helic 91.5 0.52 1.8E-05 49.8 9.1 24 59-82 158-182 (508)
489 2hf9_A Probable hydrogenase ni 91.4 0.21 7.3E-06 46.2 5.5 25 59-83 38-62 (226)
490 1m7b_A RND3/RHOE small GTP-bin 91.4 0.096 3.3E-06 46.9 2.9 23 60-82 8-30 (184)
491 2fn4_A P23, RAS-related protei 91.4 0.099 3.4E-06 46.2 3.0 23 60-82 10-32 (181)
492 2p5s_A RAS and EF-hand domain 91.4 0.12 4E-06 47.0 3.5 26 58-83 27-52 (199)
493 2a9k_A RAS-related protein RAL 91.4 0.11 3.8E-06 46.1 3.3 24 60-83 19-42 (187)
494 2yc2_C IFT27, small RAB-relate 91.4 0.16 5.4E-06 46.1 4.4 22 61-82 22-43 (208)
495 3cph_A RAS-related protein SEC 91.3 0.12 4.1E-06 47.2 3.5 24 59-82 20-43 (213)
496 4tmk_A Protein (thymidylate ki 91.3 0.12 4.2E-06 48.0 3.6 24 60-83 4-27 (213)
497 1yrb_A ATP(GTP)binding protein 91.2 0.23 7.9E-06 47.2 5.6 33 59-91 14-48 (262)
498 2bme_A RAB4A, RAS-related prot 91.2 0.1 3.6E-06 46.4 2.9 24 60-83 11-34 (186)
499 3clv_A RAB5 protein, putative; 91.2 0.14 4.7E-06 46.1 3.7 24 59-82 7-30 (208)
500 2wjy_A Regulator of nonsense t 91.2 0.11 3.9E-06 58.1 3.7 33 61-93 373-409 (800)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=6.2e-81 Score=660.98 Aligned_cols=447 Identities=42% Similarity=0.746 Sum_probs=377.7
Q ss_pred ceecC-CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 15 MFSQG-STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 15 ~~~~~-~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
++.+. .++++|+||+|++++++++++++.+++++..|..+|.+.|+|+||+||||||||++|+++|++++.||+.++++
T Consensus 4 ~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~ 83 (476)
T 2ce7_A 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGS 83 (476)
T ss_dssp -CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred eeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHH
Confidence 34455 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcE
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 173 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 173 (539)
++...+.|.+..+++.+|..|....||||||||+|.++.+++....+ ...+...++++|+..++++..+.++
T Consensus 84 ~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g--------~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 84 DFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG--------GHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp GTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----------------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc--------CcHHHHHHHHHHHHHHhccCCCCCE
Confidence 99999999999999999999999999999999999998876543222 3445667899999999988777899
Q ss_pred EEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 009263 174 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 253 (539)
Q Consensus 174 ivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~ 253 (539)
+||++||+++.+|++++|||||++.|.+++|+.++|.+|++.++++.++..++++..++..++|++++||.++|++|...
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~ 235 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALL 235 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHhCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCC-ccccc
Q 009263 254 AVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRG-QTLSQ 332 (539)
Q Consensus 254 A~~~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg-~~lG~ 332 (539)
|.+++...|+.+||..|++++..+..++...+++.+++.+++||+|||+++++++.. +++.++||+||| +++||
T Consensus 236 A~~~~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~-----~~~~~~~i~prg~~alg~ 310 (476)
T 2ce7_A 236 AAREGRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNG-----EPVHRISIIPRGYKALGY 310 (476)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTC-----CCCCEEECC---------
T ss_pred HHHcCCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCc-----cccceeeeecCcccccce
Confidence 999888999999999999999998877777888889999999999999999999877 889999999999 99999
Q ss_pred eeeecCccccccccCHHHHHHHHHHHhhHHHHHHHHhCCCCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCccc
Q 009263 333 LVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRK 412 (539)
Q Consensus 333 ~~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~~g~~stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~ 412 (539)
+++.|. ++.+.++ |.+|+++|+++|||||||+++||++|||+++ ||++||.+|+.||+.||||+++ |+++|..
T Consensus 311 ~~~~p~-~~~~~~~-~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~-Dl~~at~~a~~mv~~~gm~~~~----g~~~~~~ 383 (476)
T 2ce7_A 311 TLHLPE-EDKYLVS-RNELLDKLTALLGGRAAEEVVFGDVTSGAAN-DIERATEIARNMVCQLGMSEEL----GPLAWGK 383 (476)
T ss_dssp ---------CCSCB-HHHHHHHHHHHTHHHHHHHHHHSSCCGGGHH-HHHHHHHHHHHHHHTSCCCTTT----CSCCCCC
T ss_pred EEEcCc-ccccccC-HHHHHHHHHHHHhHHHHHhhhcCCCCcccHH-HHHHHHHHHHHHHHHhCCCCcC----CceeecC
Confidence 999875 4566665 9999999999999999999999999999987 9999999999999999999999 9998875
Q ss_pred cc--cccCCCcccCCCccCCCCCCCCCCCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccC
Q 009263 413 KV--KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIA----WRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIG 486 (539)
Q Consensus 413 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~ 486 (539)
.. .|+|+++ .....+|++++ ++|+++|+++|++|++||++||+.|++||++|+++|||+
T Consensus 384 ~~~~~~~~~~~---------------~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~ 448 (476)
T 2ce7_A 384 EEQEVFLGKEI---------------TRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIE 448 (476)
T ss_dssp ----------------------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEE
T ss_pred CCccccccccc---------------cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeC
Confidence 44 5666543 23345666654 567999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 009263 487 REEIDFILNN 496 (539)
Q Consensus 487 ~~ei~~il~~ 496 (539)
++||++|++.
T Consensus 449 ~~~~~~~~~~ 458 (476)
T 2ce7_A 449 GDELRRILSE 458 (476)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHhcc
Confidence 9999999986
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=2.5e-78 Score=644.53 Aligned_cols=465 Identities=40% Similarity=0.694 Sum_probs=405.4
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
++... ++++|+||+|+++++.++++++.++.++..|..++.+.|+|++|+||||||||+||+++|++++.+++++++++
T Consensus 21 ~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~ 99 (499)
T 2dhr_A 21 VLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 99 (499)
T ss_dssp EECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhH
Confidence 34444 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
+...+.+....+++.+|+.+....|||+||||||.++..++..... ...+...++++++..|+++..+..++
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~--------~~~e~~~~l~~LL~~Ldg~~~~~~vi 171 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG--------GNDEREQTLNQLLVEMDGFEKDTAIV 171 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTT--------SSHHHHHHHHHHHHHGGGCCSSCCCE
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCC--------CcHHHHHHHHHHHHHhcccccCccEE
Confidence 9988888888889999999887889999999999998766432111 24455688999999999988888899
Q ss_pred EEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 009263 175 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 175 vIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A 254 (539)
++++||.|+.+|++++|||||++.|.+++|+.++|.+||+.++++..+..++++..++..++|++++||+++|++|...|
T Consensus 172 viAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A 251 (499)
T 2dhr_A 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLA 251 (499)
T ss_dssp EEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHHHHhcCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCCcccccee
Q 009263 255 VRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLV 334 (539)
Q Consensus 255 ~~~~~~~I~~~d~~~a~~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg~~lG~~~ 334 (539)
.+++...|+.+||.+|++++..+..+++..+++.+++.+++||+|||+++++++.. +++.++||+|||+++|+++
T Consensus 252 ~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~-----~~v~~~~i~pr~~~~g~~~ 326 (499)
T 2dhr_A 252 AREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHA-----DGVHKVTIVPRGRALGFMM 326 (499)
T ss_dssp TTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSC-----CCCCCEESCCSSCTTCSSH
T ss_pred HHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCC-----CeeeEEEeecCCCcCcccc
Confidence 88888899999999999999999887777889999999999999999999998766 7899999999999999988
Q ss_pred eecCccccccccCHHHHHHHHHHHhhHHHHHHHHhCCCCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCccccc
Q 009263 335 FHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV 414 (539)
Q Consensus 335 ~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~~g~~stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~~~ 414 (539)
|..++.++++ +.+++++|+++|||||||+++||++|||+++ ||++||.+|+.||+.||||+++ |++.|....
T Consensus 327 --p~q~~~~~~t-~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~-Dl~~at~~a~~mv~~~gm~~~~----g~~~~~~~~ 398 (499)
T 2dhr_A 327 --PRREDMLHWS-RKRLLDQIAVALAGRAAEEIVFDDVTTGAEN-DFRQATELARRMITEWGMHPEF----GPVAYAVRE 398 (499)
T ss_dssp --HHHTTCCCCC-HHHHHHHHHHHHHHHHHHHHHSCSCCBCCCH-HHHHHHHHHHHHHTTSCCCSSS----CSCCCCCCC
T ss_pred --cchhhhhccC-HHHHHHHHHHHhhhHhHHHhhhcccCcccHH-HHHHHHHHHHHHHHHhCCCCCC----CceeecCCC
Confidence 3224666665 9999999999999999999999999999987 9999999999999999999999 999886544
Q ss_pred -cccCCCcccCCCccCCCCCCCCCCCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHH
Q 009263 415 -KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDI----AWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREE 489 (539)
Q Consensus 415 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~~~e 489 (539)
.|+| ++ . ...+|+++ +.+|+++|+++|++|++||++|++.|++||++|+++|||+++|
T Consensus 399 ~~~~~-~~---------------~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~ 461 (499)
T 2dhr_A 399 DTYLG-GY---------------D-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEE 461 (499)
T ss_dssp CCSSC-CC---------------C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHH
T ss_pred ccccc-cc---------------c-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHH
Confidence 4444 22 1 34566665 4577999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCccccccccCCCCCCcc
Q 009263 490 IDFILNNYPPQTPISRLLEEENPGTLPFI 518 (539)
Q Consensus 490 i~~il~~~~~~~~~~~~~~~~~~~~~~~~ 518 (539)
|++|++..++..|.+...+.+.|+.+|+-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (499)
T 2dhr_A 462 FQRVVEGLPLEAPEEAREEREPPRVVPKV 490 (499)
T ss_dssp HHHHHTTCCCCCCC---------------
T ss_pred HHHHhccCCCCCcchhhhccCCCCcCCCc
Confidence 99999988887788888888888887753
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-52 Score=424.31 Aligned_cols=257 Identities=37% Similarity=0.671 Sum_probs=242.1
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..+...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++
T Consensus 135 ~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 45566778999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
++++.++|+|.++..++.+|..|+..+||||||||||.+++++.....+ .+.+...++++||.+||++....
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG--------GDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG--------GGGHHHHHHHHHHHHHHTTTCCC
T ss_pred hHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCC--------CcHHHHHHHHHHHHhhhccCCCC
Confidence 9999999999999999999999999999999999999999887543322 34456788999999999999999
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
+|+||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.++++.++..++|+..+|..|.||||+||.++|++|+
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~ 366 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAG 366 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 252 LVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
..|+++++..|+.+||..|++++...
T Consensus 367 ~~Air~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 367 MYALRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence 99999999999999999999998653
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-50 Score=416.62 Aligned_cols=258 Identities=39% Similarity=0.662 Sum_probs=242.1
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..|...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++
T Consensus 169 ~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 169 SVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp CCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred eeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 44667788999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
++++.+.|+|.++..++.+|..|+..+||||||||+|.++.++...... .......++++||.++|++....
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~--------~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG--------GEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCS--------SCCHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCC--------ccHHHHHHHHHHHHHhhCcCCCC
Confidence 9999999999999999999999999999999999999999887543322 33455678999999999999999
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
+|+||+|||+|+.||+||+||||||+.|+|++||.++|.+||+.++++..+..++|++.+|..|.||||+||.++|++|+
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhcCC
Q 009263 252 LVAVRKGHESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~~~g~ 278 (539)
..|+++++..|+.+||..|++++..+.
T Consensus 401 ~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 401 LLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 999999999999999999999987643
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-50 Score=416.96 Aligned_cols=260 Identities=38% Similarity=0.646 Sum_probs=244.4
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..|.+++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++
T Consensus 196 ~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 196 TMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred ceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 45667889999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
++++.+.|+|.+++.++.+|..|+..+||||||||+|.++.+|.....+ .......+++++|.+||++....
T Consensus 276 ~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG--------GDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp GGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG--------GGGHHHHHHHHHHHHHHSSCCTT
T ss_pred hHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCC--------ccHHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999999999999999999999999999887543222 34455678999999999999999
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
+|+||+|||+|+.||+|++|||||++.|+|++|+.++|.+||+.++++..+..++++..+|..|.||||+||.++|++|+
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa 427 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAG 427 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhcCCCc
Q 009263 252 LVAVRKGHESILSSDMDDAVDRLTVGPKR 280 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~~~g~~~ 280 (539)
..|+++++..|+.+||..|++++..|.++
T Consensus 428 ~~Air~~~~~it~~Df~~Al~kV~~g~~k 456 (467)
T 4b4t_H 428 MFAIRARRKVATEKDFLKAVDKVISGYKK 456 (467)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCccCHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999887654
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-49 Score=413.69 Aligned_cols=257 Identities=39% Similarity=0.662 Sum_probs=239.7
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..|...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 34556778999999999999999999998775 99999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
++++.+.|+|.+++.++.+|..|+..+||||||||+|.++.++...... .......+++.||..||++....
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~--------~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKS--------GDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGG--------TTHHHHHHHHHHHHHHTTSCSSC
T ss_pred hhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCC--------CchHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999999999999999999999999999887543221 33455678999999999999999
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
+|+||+|||+|+.||||++|||||++.|+|++|+.++|.+||+.++++..+..++|+..+|..|.||||+||.++|++|+
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 252 LVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
..|.+++...|+.+||..|++++...
T Consensus 400 ~~a~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 400 MIALRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHSCSSS
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999987653
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-49 Score=413.00 Aligned_cols=257 Identities=42% Similarity=0.688 Sum_probs=241.1
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..|...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++
T Consensus 168 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 168 YNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred heeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 45566678999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
++++.+.|.|.++..++.+|..|+..+||||||||+|.++.++...... .......++++||.+||++....
T Consensus 248 ~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 248 ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS--------ADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp GGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS--------STTHHHHHHHHHHHHHHSSSCTT
T ss_pred hhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCC--------cchHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999999999999999887543222 33455778999999999999999
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
+++||+|||+|+.|||||+|||||++.|+||+|+.++|.+||+.++.+.....++|+..+|..|.||||+||.++|++|+
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~ 399 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAG 399 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 252 LVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 252 ~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
..|++++...|+.+||..|++++...
T Consensus 400 ~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 400 FFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999998754
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-48 Score=405.92 Aligned_cols=256 Identities=41% Similarity=0.655 Sum_probs=239.4
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
..|...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++
T Consensus 159 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 159 SVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 45566778999999999999999999998885 99999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 171 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 171 (539)
++++.+.|+|.++..++.+|..|+..+||||||||+|.++.++...... .+.+...++++||.+||++....
T Consensus 239 ~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~--------~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG--------SDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp GGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSC--------CCCHHHHHHHHHHHHHHHSCSSC
T ss_pred cchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCC--------CChHHHHHHHHHHHHhhCCCCCC
Confidence 9999999999999999999999999999999999999999887543322 33455778999999999999999
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecC-CCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIR-APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEA 250 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~-~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A 250 (539)
+++||+|||+|+.||||++|||||++.|+|| +|+.++|..||+.++++..+..++|+..+|..|.||||+||.++|++|
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999997 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 251 ALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 251 ~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
+..|+++++..|+.+||.+|+.++..
T Consensus 391 ~~~a~r~~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 391 GLRAVRKNRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHSC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhhC
Confidence 99999999999999999999988653
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=7.8e-45 Score=346.87 Aligned_cols=197 Identities=24% Similarity=0.423 Sum_probs=150.2
Q ss_pred cCCCcCCcccccccchhhhHHHHHHHHHHHHhhhcccccccccceeEEeeCCccccceeeecCccccccccCHHHHHHHH
Q 009263 276 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRL 355 (539)
Q Consensus 276 ~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~l~~~~~~~~~~i~~vtI~prg~~lG~~~~~~~~~~~~~~~t~~~l~~~i 355 (539)
.|+++++..+++.+++++||||+||||++++++.. +++++|||+|||+++||+++.|. ++.+.++ |.+|+++|
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~-----~pV~KVTIiPRG~alG~t~~~P~-ed~~~~t-k~~l~~~i 74 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDD-----DKVHKISIIPRGMALGVTQQLPI-EDKHIYD-KKDLYNKI 74 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSC-----CCCCCEECC-----------------CCCCB-HHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCC-----CceeEEEEeecCCcceEEEeCCc-ccccccC-HHHHHHHH
Confidence 46777778899999999999999999999999876 79999999999999999998875 4566666 99999999
Q ss_pred HHHhhHHHHHHHHh--CCCCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCCCCccccc-cccCCCcccCCCccCCCC
Q 009263 356 QVLLGGRAAEEVIY--GQDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV-KFVGPRLDFEGSLYDDYG 432 (539)
Q Consensus 356 ~v~LaGraAEei~~--g~~stg~~~~Dl~~At~~A~~~v~~~Gm~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 432 (539)
+|+|||||||+++| |++||||++ ||++||.||+.||+.||||+++ ||++|.... .|+| ++
T Consensus 75 ~v~LgGRaAEelifG~g~vttGA~~-Dl~~AT~iAr~MV~~~GMs~~l----G~v~~~~~~~~flg-~~----------- 137 (238)
T 2di4_A 75 LVLLGGRAAEEVFFGKDGITTGAEN-DLQRATDLAYRMVSMWGMSDKV----GPIAIRRVANPFLG-GM----------- 137 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHHHHTSCCCTTT----CSCCCCC---------------------
T ss_pred HHHHhHHHHHHHHhCCCCcccChHh-HHHHHHHHHHHHHHHhCCCCCC----CceeecCCcccccc-cc-----------
Confidence 99999999999999 789999987 9999999999999999999999 999987544 4555 22
Q ss_pred CCCCCCCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCC
Q 009263 433 LTEPPVNFNLDDDIA----WRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYPPQ 500 (539)
Q Consensus 433 ~~~~~~~~~~~~~~~----~~v~~ll~~~~~~a~~ll~~~~~~l~~la~~Ll~~e~l~~~ei~~il~~~~~~ 500 (539)
.....+|++++ .+|+++|+++|++|++||++||+.|++||++|+++|||+++||++|++.++..
T Consensus 138 ----~~~~~~Se~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~~ 205 (238)
T 2di4_A 138 ----TTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIE 205 (238)
T ss_dssp -----CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTCC
T ss_pred ----ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCCC
Confidence 23456777764 56799999999999999999999999999999999999999999999976433
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.5e-43 Score=391.75 Aligned_cols=231 Identities=42% Similarity=0.744 Sum_probs=186.5
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
..|+++|+||.|++++|++|.+.+.+ +++|+.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 35789999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 009263 98 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 177 (539)
Q Consensus 98 ~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIa 177 (539)
+|+|.+++.++.+|..|+...||||||||||.++.+|.....+ .......++++||.+||++....+|+||+
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~--------~~~~~~rv~~~lL~~mdg~~~~~~V~vi~ 621 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD--------GGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----------------------CHHHHHHHHHHHSSCSSSSEEEEC
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC--------CchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 9999999999999999999999999999999999887532211 22334578999999999999999999999
Q ss_pred ecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 009263 178 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 178 atn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
|||+|+.||+|++|||||++.|+|++|+.++|.+||+.++++.++..++|+..+|..|.||||+||.++|++|+..|+++
T Consensus 622 aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp C-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred eCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.8e-41 Score=372.76 Aligned_cols=248 Identities=41% Similarity=0.697 Sum_probs=229.6
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
..+.++|+||.|+++++++|++++.+ +++|+.|..+|..+|+|+|||||||||||+||+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 35789999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 009263 98 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 177 (539)
Q Consensus 98 ~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIa 177 (539)
.|.|.++..++.+|..|+.++||||||||||.++.++.+.. ......++++|+..|+++..+.+|+||+
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-----------~~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-----------GEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-----------CTTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-----------ChHHHHHHHHHHHHHhcccccCCEEEEE
Confidence 99999999999999999999999999999999998875432 2233578899999999998888999999
Q ss_pred ecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 009263 178 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 178 atn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
+||+++.+|++++|||||++.|+++.|+.++|.+||+.++++..+..++|+..+|..|.||+++||.++|++|...|.++
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r 425 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC-----------------CCCchhhHHHHHHHHhcC
Q 009263 258 GH-----------------ESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 258 ~~-----------------~~I~~~d~~~a~~~~~~g 277 (539)
.. ..|+.+||..|+..+...
T Consensus 426 ~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 426 KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred ccccccccccccchhhhccceeeHHHHHHHHHhCCCc
Confidence 31 247889999999887653
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=2.4e-38 Score=311.82 Aligned_cols=256 Identities=50% Similarity=0.878 Sum_probs=230.3
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
||.+..++.+|+||+|++.+++.+.+++.++..+..+..+|...+++++|+||||||||++|+++|+.++.|++.+++++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
+...+.+.....++.+|..+....|+++||||+|.+...++..... ........++.++..++++..+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~--------~~~~~~~~~~~ll~~l~~~~~~~~~~ 152 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG--------GHDEREQTLNQMLVEMDGFEGNEGII 152 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCC--------TTCHHHHHHHHHHHHHHTCCSSSCEE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCC--------CchHHHHHHHHHHHHhhCcccCCCEE
Confidence 9888888888889999999998899999999999998776543222 23344567889999999988888999
Q ss_pred EEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 009263 175 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 175 vIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A 254 (539)
||++||.++.+|++++|++||++.+.+++|+.++|.+|++.++....+..+.++..++..+.||+++||.++|++|...|
T Consensus 153 vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a 232 (257)
T 1lv7_A 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFA 232 (257)
T ss_dssp EEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888888999999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHHHHhcCC
Q 009263 255 VRKGHESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 255 ~~~~~~~I~~~d~~~a~~~~~~g~ 278 (539)
.+++...|+.+|+.+|++++..|+
T Consensus 233 ~~~~~~~i~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 233 ARGNKRVVSMVEFEKAKDKIMMGL 256 (257)
T ss_dssp HHTTCSSBCHHHHHHHHHHHTTCC
T ss_pred HHhCCCcccHHHHHHHHHHHhcCC
Confidence 999989999999999999988764
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=5.2e-37 Score=309.42 Aligned_cols=249 Identities=39% Similarity=0.699 Sum_probs=221.2
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
+.++++|+||+|++++++.|.+.+.+ +..++.|..+|+.+++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 46889999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 009263 98 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 177 (539)
Q Consensus 98 ~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIa 177 (539)
.+.|.....++.+|..+....|+||||||+|.+...++..... ........++.++..++++....+++||+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~--------~~~~~~~~~~~lL~~l~~~~~~~~v~vi~ 159 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD--------GGGAADRVINQILTEMDGMSTKKNVFIIG 159 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCC--------SSCSCCHHHHHHHHHHHSSCTTSSEEEEE
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCC--------cchHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 9999999999999999999999999999999999876432111 01112356788999999888788999999
Q ss_pred ecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 009263 178 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 178 atn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
+||.++.+|++++|+|||+..+++++|+.++|.+|++.++++..+..++++..++..+.||+++||.++|++|...|.++
T Consensus 160 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 160 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 239 (301)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888889999999999999999999999999888754
Q ss_pred CC-------------------------CCCchhhHHHHHHHHh
Q 009263 258 GH-------------------------ESILSSDMDDAVDRLT 275 (539)
Q Consensus 258 ~~-------------------------~~I~~~d~~~a~~~~~ 275 (539)
.. ..|+.+||..|+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 240 SIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp HHHHHC--------------------CCCBCHHHHHHHHTTCC
T ss_pred HHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 21 3578888888887653
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.5e-36 Score=303.30 Aligned_cols=255 Identities=45% Similarity=0.783 Sum_probs=233.2
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
+.....++++|++|+|++++++.|.+.+.. +..++.+..+|..++.++||+||||||||++|+++|++++.+++.+++.
T Consensus 6 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~ 85 (285)
T 3h4m_A 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGS 85 (285)
T ss_dssp EEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehH
Confidence 345667899999999999999999998875 8899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcE
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 173 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 173 (539)
++...+.+.....++.+|..+....|+||||||+|.+..++.+...+ ........+..++..++++....++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~--------~~~~~~~~l~~ll~~~~~~~~~~~~ 157 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG--------GDREVQRTLMQLLAEMDGFDARGDV 157 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCG--------GGGHHHHHHHHHHHHHHTTCSSSSE
T ss_pred HHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCC--------ccHHHHHHHHHHHHHhhCCCCCCCE
Confidence 99998999888999999999999999999999999998776543222 3445567888999999888888899
Q ss_pred EEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 009263 174 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 253 (539)
Q Consensus 174 ivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~ 253 (539)
+||+|||.++.++++++|++||+..+.++.|+.++|.+|++.++....+..+.++..++..+.|+++++|..+|+.|...
T Consensus 158 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 237 (285)
T 3h4m_A 158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMN 237 (285)
T ss_dssp EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888999999999999999999999999999
Q ss_pred HHHhCCCCCchhhHHHHHHHHhcC
Q 009263 254 AVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 254 A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
|.+++...|+.+|+.+|+.++...
T Consensus 238 a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 238 AIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHhccCcCCHHHHHHHHHHHHhc
Confidence 999999999999999999988653
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=306.18 Aligned_cols=247 Identities=38% Similarity=0.685 Sum_probs=206.9
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHH-HHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELV-RYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
..|+++|+||+|++++|++|++.+ ..+.++..+..+++.+++|++|+||||||||+|++++|+.++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 457899999999999999999855 4699999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 009263 98 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 177 (539)
Q Consensus 98 ~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIa 177 (539)
.+.+.....++.+|..+....|+++|+||+|.+...+... ........+++++..|++......+++++
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-----------~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia 151 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-----------ETGASVRVVNQLLTEMDGLEARQQVFIMA 151 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC--------------------CTTHHHHHHHHHHTCCSTTCEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-----------cchHHHHHHHHHHHhhhcccccCCEEEEe
Confidence 8888888889999999988899999999999987554211 00112346788999999988888899999
Q ss_pred ecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc---CCCCCCCCHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 009263 178 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK---VKMSDSVDLSSYAKNLP--GWTGARLAQLVQEAAL 252 (539)
Q Consensus 178 atn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~---~~~~~~~~~~~la~~t~--g~s~~dl~~lv~~A~~ 252 (539)
+||+|+.+|++++|||||++.|++++|+.++|.+||+.++++ .....++++..++..+. ||||+||.++|++|..
T Consensus 152 ~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~ 231 (274)
T 2x8a_A 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI 231 (274)
T ss_dssp EESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHH
T ss_pred ecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999854 34567889999999755 9999999999999999
Q ss_pred HHHHhC-----------CCCCchhhHHHHHHHHhc
Q 009263 253 VAVRKG-----------HESILSSDMDDAVDRLTV 276 (539)
Q Consensus 253 ~A~~~~-----------~~~I~~~d~~~a~~~~~~ 276 (539)
.|.++. ...|+.+||..|+.++..
T Consensus 232 ~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 232 CALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp HHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred HHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence 998752 336999999999998754
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=6.5e-37 Score=301.76 Aligned_cols=257 Identities=48% Similarity=0.796 Sum_probs=203.6
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHh
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 100 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~ 100 (539)
++++|++|+|++++++.|.+++.++..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++...+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 009263 101 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATN 180 (539)
Q Consensus 101 g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn 180 (539)
+.....++.+|..+....|+||||||+|.+..++....... ...+....++.++..+++.....++++|++||
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~-------~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn 153 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF-------SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTN 153 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC--------------------------CHHHHHHHHHHHTCCTTCCEEEEEEES
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCc-------cchhHHHHHHHHHHHhhCcCCCCCEEEEecCC
Confidence 88888899999999988999999999999987653211110 12233467888999999887778999999999
Q ss_pred CCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC--HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 009263 181 RRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD--LSSYAKNLPGWTGARLAQLVQEAALVAVRKG 258 (539)
Q Consensus 181 ~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~--~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~ 258 (539)
.++.+|++++|+|||+..+++++|+.++|.+|++.++.......+.+ ...++..+.|+++++|.++|++|...|.+++
T Consensus 154 ~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~ 233 (262)
T 2qz4_A 154 RADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 233 (262)
T ss_dssp CGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----
T ss_pred ChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998876654433 4789999999999999999999999999988
Q ss_pred CCCCchhhHHHHHHHHhcCCCcCCcc
Q 009263 259 HESILSSDMDDAVDRLTVGPKRRGIE 284 (539)
Q Consensus 259 ~~~I~~~d~~~a~~~~~~g~~~~~~~ 284 (539)
...|+.+|+..|+.++..+..++...
T Consensus 234 ~~~i~~~d~~~a~~~~~~~~~~~~~~ 259 (262)
T 2qz4_A 234 HTSVHTLNFEYAVERVLAGTAKKSKI 259 (262)
T ss_dssp ---CCBCCHHHHHHHHHHHHHCC---
T ss_pred CCCCCHHHHHHHHHHhccChhhhhHh
Confidence 89999999999999988766554433
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=8.6e-35 Score=285.84 Aligned_cols=247 Identities=53% Similarity=0.896 Sum_probs=219.0
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
....|+++|++++|+++++.+++++...+..+..+..+++..++|++|+||||||||+|++++++.++.+++.+++.++.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 45678999999999999999999999988888999999999999999999999999999999999999999999999888
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
..+.+.....+..+|+.+....|+++++||+|.++..+...... ...+....++.++..+++......++++
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~--------~~~~~~~~~~~ll~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG--------GNDEREQTLNQLLVEMDGFEKDTAIVVM 158 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-----------------CHHHHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccc--------cchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 87777777788899999887889999999999998665321111 2334567788999999988877889999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~ 256 (539)
++||.|+.+|++++|++||++.++++.|+.++|.+||+.+++...+..+.++..++..+.|++++||.++|++|...|.+
T Consensus 159 a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~ 238 (254)
T 1ixz_A 159 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 238 (254)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHH
Q 009263 257 KGHESILSSDMDDAV 271 (539)
Q Consensus 257 ~~~~~I~~~d~~~a~ 271 (539)
++...|+.+|+.+|+
T Consensus 239 ~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 239 EGRRKITMKDLEEAA 253 (254)
T ss_dssp TTCSSBCHHHHHHHT
T ss_pred hcCCCcCHHHHHHHh
Confidence 888899999999885
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=299.60 Aligned_cols=226 Identities=36% Similarity=0.619 Sum_probs=201.0
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-CCCEEEEeCchh
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAGSEF 95 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-~~~~~~~~~~~~ 95 (539)
.+.|+++|+||+|++++|+.|++.+.+ ++.++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 356899999999999999999998875 888887764 35678999999999999999999999999 899999999999
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCcEE
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-TGKGVI 174 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~vi 174 (539)
...+.|.....++.+|..++...|+||||||+|.+..++... ........+++++..++++. ...+++
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-----------~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-----------ESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-----------CTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-----------cchHHHHHHHHHHHHHhcccccCCCEE
Confidence 999999999999999999999999999999999998776542 12234567889999999885 367899
Q ss_pred EEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 009263 175 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALV 253 (539)
Q Consensus 175 vIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~A~~~ 253 (539)
||++||.++.+|++++| ||+..+++++|+.++|.+||+.++.+.... .+.++..++..+.|||++||.++|++|...
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQ 229 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999876654 456789999999999999999999999999
Q ss_pred HHHh
Q 009263 254 AVRK 257 (539)
Q Consensus 254 A~~~ 257 (539)
|.++
T Consensus 230 a~r~ 233 (322)
T 1xwi_A 230 PVRK 233 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.9e-35 Score=300.77 Aligned_cols=232 Identities=35% Similarity=0.583 Sum_probs=201.1
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
+..+..+.++++|++|+|++++++.|.+.+.+ +..++.+.. +..+++++||+||||||||++|+++|++++.+|+.++
T Consensus 5 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp -CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred ccceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 34456778999999999999999999998875 777777665 5678899999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-CC
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-TG 170 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-~~ 170 (539)
++++...+.|.....++.+|..++...|+||||||||.+..++.... ........+.++..++++. ..
T Consensus 84 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~-----------~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 84 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE-----------SEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp HHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-----------------CCTHHHHHHHHHHHGGGGTSC
T ss_pred hHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc-----------chHHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999987664321 1123456788899998874 56
Q ss_pred CcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHH
Q 009263 171 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQE 249 (539)
Q Consensus 171 ~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~ 249 (539)
.+++||++||.++.+|++++| ||+..+++++|+.++|.+||+.++.+.... .+.++..++..+.||+++||.++|++
T Consensus 153 ~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 789999999999999999999 999999999999999999999999876644 45578999999999999999999999
Q ss_pred HHHHHHHhC
Q 009263 250 AALVAVRKG 258 (539)
Q Consensus 250 A~~~A~~~~ 258 (539)
|...|.++.
T Consensus 231 a~~~a~r~~ 239 (322)
T 3eie_A 231 ALMQPIRKI 239 (322)
T ss_dssp HTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888763
No 20
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=2e-33 Score=279.93 Aligned_cols=246 Identities=54% Similarity=0.902 Sum_probs=218.4
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
...++++|++|+|.+++++++.++...+..+..+..+++..++|++|+||||||||+|++++++.++.+++.+++.++..
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34588999999999999999999999998899999999999999999999999999999999999999999999998887
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 009263 98 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 177 (539)
Q Consensus 98 ~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIa 177 (539)
.+.+.....+..+|..+....|+++++||+|.++..+...... ...+....++.++..+++......+++++
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~--------~~~~~~~~~~~ll~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG--------GNDEREQTLNQLLVEMDGFEKDTAIVVMA 183 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC----------------CHHHHHHHHHHHHHHTTCCTTCCEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCC--------cchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 7777777788899999887889999999999987654321100 23345677889999999887777899999
Q ss_pred ecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 009263 178 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 178 atn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
+||.|+.+|++++|++||++.+++++|+.++|.+||+.++....+..+.++..++..+.|++++||+++|++|...|.++
T Consensus 184 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp EESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999988
Q ss_pred CCCCCchhhHHHHH
Q 009263 258 GHESILSSDMDDAV 271 (539)
Q Consensus 258 ~~~~I~~~d~~~a~ 271 (539)
+...|+.+|+.+|+
T Consensus 264 ~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 264 GRRKITMKDLEEAA 277 (278)
T ss_dssp TCCSBCHHHHHHHT
T ss_pred CCCCcCHHHHHHHh
Confidence 88899999999885
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.3e-34 Score=296.57 Aligned_cols=230 Identities=35% Similarity=0.591 Sum_probs=191.3
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
..+....++++|+||+|++.+++.|.+.+.+ +..++.|.. +..+++++||+||||||||++|+++|++++.+|+.+++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 3455678899999999999999999998875 788887765 56788999999999999999999999999999999999
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC-CC
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GK 171 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~ 171 (539)
+++...+.|.....++.+|..+....|+||||||+|.+...+... .........++|+..++++.. ..
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~-----------~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-----------ESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-----------------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC-----------cchHHHHHHHHHHHHhhcccccCC
Confidence 999999999999999999999999999999999999998765432 122335667888999887754 56
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEA 250 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~A 250 (539)
+++||++||.++.+|++++| ||+..+++++|+.++|.+||+.++...... .+.++..|+..+.||+++||.++|++|
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 264 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999999 999999999999999999999999877643 456789999999999999999999999
Q ss_pred HHHHHHh
Q 009263 251 ALVAVRK 257 (539)
Q Consensus 251 ~~~A~~~ 257 (539)
...|.++
T Consensus 265 ~~~a~~~ 271 (355)
T 2qp9_X 265 LMQPIRK 271 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=7.4e-34 Score=303.10 Aligned_cols=245 Identities=41% Similarity=0.713 Sum_probs=221.9
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
.++++|++|+|++++++.|.+.+.. +.+++.|..+|..++.++||+||||||||++|++++++++.+|+.++|+++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 3567899999999999999999886 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 009263 99 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 178 (539)
Q Consensus 99 ~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa 178 (539)
+.|.....++.+|..|....|+||||||||.+..+++.. .......+++.|+..|++.....+++||+|
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-----------~~~~~~~~~~~LL~~ld~~~~~~~v~vIaa 346 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-----------HGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-----------CCHHHHHHHHHHHHHHHHSCTTSCEEEEEE
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-----------cchHHHHHHHHHHHHhhccccCCceEEEEe
Confidence 999999999999999999999999999999999876532 223345678889999998888889999999
Q ss_pred cCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 009263 179 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 258 (539)
Q Consensus 179 tn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~ 258 (539)
||.++.++++++|+|||+..+++++|+.++|.+||+.++....+..+.++..++..+.||+++||.++|++|...|.++.
T Consensus 347 Tn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~ 426 (489)
T 3hu3_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426 (489)
T ss_dssp ESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999888888899999999999999999999999999999876
Q ss_pred CC-----------------CCchhhHHHHHHHHh
Q 009263 259 HE-----------------SILSSDMDDAVDRLT 275 (539)
Q Consensus 259 ~~-----------------~I~~~d~~~a~~~~~ 275 (539)
.. .|+.+||..|+..+.
T Consensus 427 ~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ 460 (489)
T 3hu3_A 427 MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (489)
T ss_dssp TTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHH
T ss_pred cccccccccccchhhcccCcCCHHHHHHHHHhCC
Confidence 44 366777777776554
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=4.2e-36 Score=297.47 Aligned_cols=254 Identities=50% Similarity=0.823 Sum_probs=217.5
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
.+.++++|++|+|++++++.|.+++..+..++.|..++...++++||+||||||||++|+++|++++.|++.++++.+..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC-CCcEEEE
Q 009263 98 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFL 176 (539)
Q Consensus 98 ~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~vivI 176 (539)
.+.+.+...++.+|..+....|+||||||+|.+...+....... ........++.++..++++.. ..+++||
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~-------~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 155 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS-------GNDEREQTLNQLLAEMDGFGSENAPVIVL 155 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-----------------CCCSCSSTTTTTTTTTCSSCSCSCCEEE
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCC-------CchhHHHHHHHHHHHhhCcccCCCCEEEE
Confidence 88887777788899999988999999999999987653211000 111112345677777777654 3458999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~ 256 (539)
+|||.++.+|++++|+|||+..+++++|+.++|.++|+.++....+..+.++..++..+.|+++++|.++|++|...|.+
T Consensus 156 ~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 156 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235 (268)
T ss_dssp ECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSS
T ss_pred EecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877788899999999999999999999999999988
Q ss_pred hCCCCCchhhHHHHHHHHhcCC
Q 009263 257 KGHESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 257 ~~~~~I~~~d~~~a~~~~~~g~ 278 (539)
++...|+.+|+.+|+.++....
T Consensus 236 ~~~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 236 NNQKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp SCCCSCCHHHHHTSCTTCCCCC
T ss_pred hccCCcCHHHHHHHHHHHhhcc
Confidence 8788999999999988765543
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4.6e-33 Score=294.97 Aligned_cols=229 Identities=35% Similarity=0.607 Sum_probs=191.0
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-CCCEEEEeC
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAG 92 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-~~~~~~~~~ 92 (539)
.+....++++|+||+|++.+++.|.+.+.+ +..+..|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 345567899999999999999999998764 777776653 34678999999999999999999999999 899999999
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC-CC
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GK 171 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~ 171 (539)
+++...+.|.....++.+|..+....|+||||||||.+...+.... .......++.|+..++++.. ..
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~-----------~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE-----------SEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp C---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC-----------CGGGHHHHHHHHTTTTCSSCCCS
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc-----------ccHHHHHHHHHHHHHhCcccCCC
Confidence 9999999999888999999999999999999999999987654321 12234678899999998753 57
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEA 250 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~A 250 (539)
+++||+|||.++.+|++++| ||+..+++++|+.++|..||+.++...... .+.++..++..+.|||++||.++|++|
T Consensus 271 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999999 999999999999999999999999876543 456789999999999999999999999
Q ss_pred HHHHHHh
Q 009263 251 ALVAVRK 257 (539)
Q Consensus 251 ~~~A~~~ 257 (539)
...|+++
T Consensus 349 ~~~a~r~ 355 (444)
T 2zan_A 349 LMQPVRK 355 (444)
T ss_dssp HTHHHHH
T ss_pred HHHHHHH
Confidence 9988875
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.9e-31 Score=271.96 Aligned_cols=247 Identities=31% Similarity=0.546 Sum_probs=209.2
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
+....++++|++|+|++.+++.|.+.+.+ +..+..+...+ .+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 44567899999999999999999998875 77777666553 67889999999999999999999999999999999999
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC--CCCc
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--TGKG 172 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~--~~~~ 172 (539)
+...+.+.....++.+|..+....|+||||||||.+...+... ........++.++..+++.. ...+
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~-----------~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG-----------EHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-----------------CHHHHHHHHHHHHHHC----CCCC
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC-----------cchHHHHHHHHHHHHHhcccccCCCC
Confidence 9998889888899999999999999999999999998765321 12234567788898888764 3467
Q ss_pred EEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 173 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 173 vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
++||++||.++.++++++| ||+..+++++|+.++|.++++.++...... .+.++..++..+.||++++|..+|+.|.
T Consensus 222 v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp EEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999998765433 3345888999999999999999999999
Q ss_pred HHHHHhC------------CCCCchhhHHHHHHHHhc
Q 009263 252 LVAVRKG------------HESILSSDMDDAVDRLTV 276 (539)
Q Consensus 252 ~~A~~~~------------~~~I~~~d~~~a~~~~~~ 276 (539)
..+.++. ...|+.+||..|+..+..
T Consensus 300 ~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 300 LGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp THHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 9888753 357999999999998764
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=2.2e-31 Score=267.47 Aligned_cols=247 Identities=34% Similarity=0.571 Sum_probs=205.3
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
.+..+.++++|++|+|++++++.|.+.+.. ...++.+..++ .++.++||+||||||||++|+++|++++.+++.++++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 88 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA 88 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH
Confidence 455677899999999999999999998865 66777666554 4678999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCC---
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG--- 170 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--- 170 (539)
++...+.+.....++.+|..+....|+||||||+|.+...++.... .......+.++..++++...
T Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~-----------~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH-----------EASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp TTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC----------------CCSHHHHHHHHHHHHHCC-----
T ss_pred HHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcc-----------hHHHHHHHHHHHHHhcccccCCC
Confidence 9988888888888999999999999999999999999876543211 11234566777777766443
Q ss_pred CcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHH
Q 009263 171 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQE 249 (539)
Q Consensus 171 ~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~ 249 (539)
.+++||++||.++.+++++++ ||+..+++++|+.++|..|++.++...... .+.++..++..+.|+++++|.++|++
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 579999999999999999999 999999999999999999999998875432 23357889999999999999999999
Q ss_pred HHHHHHHhCC------------CCCchhhHHHHHHHHh
Q 009263 250 AALVAVRKGH------------ESILSSDMDDAVDRLT 275 (539)
Q Consensus 250 A~~~A~~~~~------------~~I~~~d~~~a~~~~~ 275 (539)
|...|.++.. ..|+.+||..|+..+.
T Consensus 236 a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 236 AALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 9999988742 4799999999987653
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=271.76 Aligned_cols=247 Identities=35% Similarity=0.572 Sum_probs=198.6
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
-|....++++|++|+|++.+++.|.+.+.. ...+..+..++ .+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA 182 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH
Confidence 355677899999999999999999998875 55666666555 4678999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC--CC
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT--GK 171 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~ 171 (539)
++...+.|.....++.+|..+....|+||||||||.+...+... ........++.|+..++++.. ..
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~-----------~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG-----------EHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-------------------CTHHHHHHHHHHHHHHHC-----
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc-----------cchHHHHHHHHHHHHhhcccccCCC
Confidence 99999999999999999999999999999999999997765432 112234567778888876644 46
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 009263 172 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEA 250 (539)
Q Consensus 172 ~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~A 250 (539)
+++||++||.++.++++++| ||+..++++.|+.++|.+||+.++...... .+.++..++..+.|+++++|..+++.|
T Consensus 252 ~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDA 329 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 79999999999999999999 999999999999999999999998775433 233578999999999999999999999
Q ss_pred HHHHHHh------------CCCCCchhhHHHHHHHHh
Q 009263 251 ALVAVRK------------GHESILSSDMDDAVDRLT 275 (539)
Q Consensus 251 ~~~A~~~------------~~~~I~~~d~~~a~~~~~ 275 (539)
...+.++ ....|+.+||..++..+.
T Consensus 330 ~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 330 ALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp TTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred HHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcC
Confidence 9999887 335789999999998753
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=2.4e-33 Score=316.77 Aligned_cols=233 Identities=41% Similarity=0.736 Sum_probs=204.0
Q ss_pred cCCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 18 QGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 18 ~~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
...+.++|++++|++++|+.|.+.+.+ +..+..+..++..++.++||+||||||||++|+++|+.++.+++.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 345789999999999999999998875 7778888888999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
..|.|.....++.+|..++...||||||||||.+...+.+.... .......++++||..|+++....+++||
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~--------~~~~~~~v~~~LL~~ld~~~~~~~v~vI 620 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD--------GGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSH--------HHHHHHHHHHHHHTTCC------CCBCC
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCC--------cchhHHHHHHHHHHHHhcccccCCeEEE
Confidence 99999999999999999999999999999999998776542211 2334567899999999999888899999
Q ss_pred EecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 009263 177 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 177 aatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~ 256 (539)
+|||+++.+|++++|||||+..|++++|+.++|.+||+.++.+..+..++++..++..+.|||++||.++|++|...|.+
T Consensus 621 ~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700 (806)
T ss_dssp CCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHS
T ss_pred EecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999987
Q ss_pred hC
Q 009263 257 KG 258 (539)
Q Consensus 257 ~~ 258 (539)
+.
T Consensus 701 ~~ 702 (806)
T 1ypw_A 701 ES 702 (806)
T ss_dssp CC
T ss_pred HH
Confidence 65
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=7.2e-30 Score=256.03 Aligned_cols=230 Identities=17% Similarity=0.178 Sum_probs=161.6
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHH----HhCCCeEEEEeCcch
Q 009263 54 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDA 129 (539)
Q Consensus 54 ~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a----~~~~p~Il~iDEiD~ 129 (539)
.+.++|.++||+||||||||++|+++|++++.+++.++++++.+.+.|.....++..|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3578899999999999999999999999999999999999999999999999999999988 577899999999999
Q ss_pred hhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCCcCCccccCCCcccee
Q 009263 130 LATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRDLLDPALLRPGRFDRK 198 (539)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-----------~~~~~vivIaatn~~~~ld~al~r~gRf~~~ 198 (539)
+..++.+... .......+.+.|+..+|+. ....+++||+|||.++.+|++++|+|||+..
T Consensus 111 ~~~~~~~~~~---------~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~ 181 (293)
T 3t15_A 111 GAGRMGGTTQ---------YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181 (293)
T ss_dssp ----------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEE
T ss_pred hcCCCCCCcc---------ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCcee
Confidence 9875432110 1111234556777777633 2456799999999999999999999999998
Q ss_pred eecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHH-------HHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 199 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL-------VQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 199 i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l-------v~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
|++ |+.++|.+|++.++... +++...++..+.||++++|..+ +.++.....++ +..+.+...+
T Consensus 182 i~~--P~~~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~----~g~~~~~~~~ 251 (293)
T 3t15_A 182 YWA--PTREDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSG----TGIEKIGDKL 251 (293)
T ss_dssp EEC--CCHHHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHH----TCSTTCHHHH
T ss_pred EeC--cCHHHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHHHH
Confidence 874 79999999999888643 5678899999999999888642 11111111111 1122222222
Q ss_pred HHHhcCCCcCCcccccccchhhhHHHHHHHHHHHH
Q 009263 272 DRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 306 (539)
Q Consensus 272 ~~~~~g~~~~~~~~~~~~~~~~a~hEaGhAvv~~~ 306 (539)
... ....+.+.+......++||+||+++...
T Consensus 252 ---~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~eq 282 (293)
T 3t15_A 252 ---LNS-FDGPPTFEQPKMTIEKLLEYGNMLVQEQ 282 (293)
T ss_dssp ---TSC-SSCSCCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred ---HcC-CCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 111 1223455666788899999999998864
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=2.1e-27 Score=268.22 Aligned_cols=247 Identities=41% Similarity=0.706 Sum_probs=220.7
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
..++++|+||+|++++++.|.+.+.. +.+++.|..+++.++.++||+||||||||++|+++|++++.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34679999999999999999999986 99999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 009263 98 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 177 (539)
Q Consensus 98 ~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIa 177 (539)
.+.+.....++.+|..+....|+++||||+|.+..++... ........++.++..+++.....++++|+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-----------~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~ 345 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-----------HGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-----------CSHHHHHHHHHHHHHHHSSCTTSCCEEEE
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-----------cchHHHHHHHHHHHHhhhhcccccEEEec
Confidence 8889889999999999999999999999999998765432 22334567788899999988888999999
Q ss_pred ecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 009263 178 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 178 atn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
+||+++.+|+++.+++||+..+.++.|+.++|.+|++.++.+..+..+.++..++..+.|++++++..++++|...+.++
T Consensus 346 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp ECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999888775
Q ss_pred CCC-----------------CCchhhHHHHHHHHhc
Q 009263 258 GHE-----------------SILSSDMDDAVDRLTV 276 (539)
Q Consensus 258 ~~~-----------------~I~~~d~~~a~~~~~~ 276 (539)
... .++.+++..++.....
T Consensus 426 ~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 426 KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp TTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred hccccchhhhccchhhhhhhhhhhhhhhccccccCc
Confidence 432 3566778887776543
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=6.3e-25 Score=233.59 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=147.8
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC--CCEEEEeC
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAG 92 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~~~~ 92 (539)
+.....+...|++|+|++++++.+..++..++. |..+++++||+||||||||++|+++|++++ .+|+.+++
T Consensus 26 l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~ 98 (456)
T 2c9o_A 26 LDESGLAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98 (456)
T ss_dssp BCTTSCBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred CCcccChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence 333445677899999999999999998876653 345788999999999999999999999999 99999999
Q ss_pred chhhHHHhhhhhHHHHHHHHHH---HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhh--------hhhHHHHHHHHHH
Q 009263 93 SEFVEVLVGVGSARIRDLFKRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNA--------ATQERETTLNQLL 161 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a---~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~ll 161 (539)
+++...+.+.... +++.|..| +...||||||||+|.++.++.....+........ .........+.++
T Consensus 99 ~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll 177 (456)
T 2c9o_A 99 SEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIF 177 (456)
T ss_dssp GGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHH
T ss_pred HHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHH
Confidence 9999999998876 89999999 7788999999999999987754211100000000 0000001123345
Q ss_pred HHhc--CCCCCCcEEEEEecCCCCcCCccccCCCccce--eeecCCCC--HHHHHHHHHHHhccCCCCCCCCHHHHHhhC
Q 009263 162 IELD--GFDTGKGVIFLAATNRRDLLDPALLRPGRFDR--KIRIRAPN--AKGRTEILKIHASKVKMSDSVDLSSYAKNL 235 (539)
Q Consensus 162 ~~ld--~~~~~~~vivIaatn~~~~ld~al~r~gRf~~--~i~v~~P~--~~er~~il~~~l~~~~~~~~~~~~~la~~t 235 (539)
..++ +...+..++|++|||.++.+|+++.|+|||++ .+.+|.|+ .++|.+|++.+... |++.++..+
T Consensus 178 ~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~-------dl~~~a~~t 250 (456)
T 2c9o_A 178 ESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH-------DLDVANARP 250 (456)
T ss_dssp HHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH-------HHHHTC---
T ss_pred HHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH-------HHHHHHHhC
Confidence 5543 33444556667999999999999999999999 66777774 47788877654421 688889999
Q ss_pred CCCCHHHHHHHHHH
Q 009263 236 PGWTGARLAQLVQE 249 (539)
Q Consensus 236 ~g~s~~dl~~lv~~ 249 (539)
.| |+|+.++|+.
T Consensus 251 ~g--gadl~~l~~~ 262 (456)
T 2c9o_A 251 QG--GQDILSMMGQ 262 (456)
T ss_dssp --------------
T ss_pred CC--hhHHHHHHhh
Confidence 99 9999999965
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=2.1e-22 Score=202.99 Aligned_cols=222 Identities=16% Similarity=0.219 Sum_probs=166.4
Q ss_pred cccCcHHHHHHHHHHHHHhcChhhhhhcCCCC---CceEEEECCCCCcHHHHHHHHHHhc-------CCCEEEEeCchhh
Q 009263 27 DVAGIDEAVEELQELVRYLKNPELFDKMGIKP---PHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSEFV 96 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~---~~giLL~GppGtGKT~la~alA~~~-------~~~~~~~~~~~~~ 96 (539)
+|+|++++++.|.+++.....+..+...|+.. +.++||+||||||||++|+++|+.+ ..+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 79999999999999998766677776666543 4469999999999999999999988 3489999999998
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEE
Q 009263 97 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 176 (539)
Q Consensus 97 ~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivI 176 (539)
..+.|.....+...|..+ .++||||||+|.+...++.. ......++.|+..++. ...++++|
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~-------------~~~~~~~~~Ll~~l~~--~~~~~~~i 173 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER-------------DYGQEAIEILLQVMEN--NRDDLVVI 173 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC----------------CCTHHHHHHHHHHHHH--CTTTCEEE
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc-------------cccHHHHHHHHHHHhc--CCCCEEEE
Confidence 888888888888888876 46799999999997544311 1113456677777763 34567888
Q ss_pred EecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhh-------CCCCCHHHH
Q 009263 177 AATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN-------LPGWTGARL 243 (539)
Q Consensus 177 aatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~-------t~g~s~~dl 243 (539)
++||.+. .++|+|++ ||+.+++|++|+.+++..|++.++.......+.+ +..++.. ....+++++
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l 251 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSI 251 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHH
Confidence 8888654 35799999 9999999999999999999999998755432222 3444443 222369999
Q ss_pred HHHHHHHHHHHHHh----CCCCCchhhHH
Q 009263 244 AQLVQEAALVAVRK----GHESILSSDMD 268 (539)
Q Consensus 244 ~~lv~~A~~~A~~~----~~~~I~~~d~~ 268 (539)
.++++.|...+..+ ....++.+++.
T Consensus 252 ~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 252 RNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99999998766544 33455655554
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.87 E-value=8.1e-22 Score=203.60 Aligned_cols=221 Identities=20% Similarity=0.257 Sum_probs=163.1
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEEeCchhhH
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFVE 97 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~~~~~~~~ 97 (539)
.|..+|++++|++.+++.+..+...+... ..+++++||+||||||||++|+++|+.++. |++.+++..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 34455999999999999988887766543 245689999999999999999999999874 888888765332
Q ss_pred HH-------------------------------------------------hhhhhHHHHHHHHHHHh---------CCC
Q 009263 98 VL-------------------------------------------------VGVGSARIRDLFKRAKV---------NKP 119 (539)
Q Consensus 98 ~~-------------------------------------------------~g~~~~~~~~~f~~a~~---------~~p 119 (539)
.+ .+.....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 11 11113345555544432 126
Q ss_pred eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEec-----------CCCCcCCcc
Q 009263 120 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT-----------NRRDLLDPA 188 (539)
Q Consensus 120 ~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaat-----------n~~~~ld~a 188 (539)
+||||||+|.+.. ..++.|+..++.. ...++++++. |.+..++++
T Consensus 191 ~vl~IDEi~~l~~----------------------~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~ 246 (368)
T 3uk6_A 191 GVLFIDEVHMLDI----------------------ESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPID 246 (368)
T ss_dssp CEEEEESGGGSBH----------------------HHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHH
T ss_pred ceEEEhhccccCh----------------------HHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHH
Confidence 8999999998742 2345566666542 2345555443 357789999
Q ss_pred ccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhH
Q 009263 189 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDM 267 (539)
Q Consensus 189 l~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~ 267 (539)
+++ ||.. +.|++|+.+++.++++.++......- +..+..++..+.+.+++++.++++.|...|..++...|+.+++
T Consensus 247 l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v 323 (368)
T 3uk6_A 247 LLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDI 323 (368)
T ss_dssp HHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 999 8876 79999999999999999887644332 1236777888874589999999999999999999999999999
Q ss_pred HHHHHHH
Q 009263 268 DDAVDRL 274 (539)
Q Consensus 268 ~~a~~~~ 274 (539)
.+++...
T Consensus 324 ~~a~~~~ 330 (368)
T 3uk6_A 324 KRVYSLF 330 (368)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 9999864
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.87 E-value=5.5e-21 Score=195.13 Aligned_cols=223 Identities=20% Similarity=0.242 Sum_probs=168.2
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
...|.....+.+|++++|.+.+++.+...+...... ..++.++||+||||||||++|+++++.++.+|+.+++
T Consensus 16 ~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 16 DETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred hhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence 446777888999999999999999999888765322 1356689999999999999999999999999999998
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC----
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD---- 168 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~---- 168 (539)
..+.. ...+...+.. ...+++|||||||.+... ..+.|+..++...
T Consensus 89 ~~~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~----------------------~~~~Ll~~l~~~~~~~~ 138 (338)
T 3pfi_A 89 PMIEK------SGDLAAILTN--LSEGDILFIDEIHRLSPA----------------------IEEVLYPAMEDYRLDII 138 (338)
T ss_dssp GGCCS------HHHHHHHHHT--CCTTCEEEEETGGGCCHH----------------------HHHHHHHHHHTSCC---
T ss_pred hhccc------hhHHHHHHHh--ccCCCEEEEechhhcCHH----------------------HHHHHHHHHHhccchhh
Confidence 76532 2233333332 346789999999987532 2233444443321
Q ss_pred ------------CCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHHhhC
Q 009263 169 ------------TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNL 235 (539)
Q Consensus 169 ------------~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~~~~~la~~t 235 (539)
...++++|++||....++++|++ ||+.++.+++|+.+++..+++.++....... +..+..++..+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~ 216 (338)
T 3pfi_A 139 IGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS 216 (338)
T ss_dssp ------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT
T ss_pred cccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 01248999999999999999999 9999999999999999999999987655332 22266777766
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 236 PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 236 ~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
.| +++.+.++++.+...|...+...|+.+++..++....
T Consensus 217 ~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 217 RS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLG 255 (338)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred Cc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhC
Confidence 66 7899999999999888888888899999999987753
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.85 E-value=1.6e-20 Score=190.28 Aligned_cols=225 Identities=21% Similarity=0.263 Sum_probs=165.0
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
|......+.+|++++|.+.+++.+...+...... ...+.++||+||||||||++|+++++.++.+++.++++.
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 73 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA 73 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTT
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 3456678889999999999999998887754322 134578999999999999999999999999999999876
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc-----CCC-
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-----GFD- 168 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld-----~~~- 168 (539)
+.. ...+...|..+ ...+++|||||+|.+.... ...+..++.... +..
T Consensus 74 ~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~-------------------~~~L~~~l~~~~~~~v~~~~~ 127 (324)
T 1hqc_A 74 IEK------PGDLAAILANS-LEEGDILFIDEIHRLSRQA-------------------EEHLYPAMEDFVMDIVIGQGP 127 (324)
T ss_dssp CCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCHHH-------------------HHHHHHHHHHSEEEECCSSSS
T ss_pred cCC------hHHHHHHHHHh-ccCCCEEEEECCcccccch-------------------HHHHHHHHHhhhhHHhccccc
Confidence 532 11222233221 2467899999999875321 122333333321 000
Q ss_pred -------CCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCCCH
Q 009263 169 -------TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTG 240 (539)
Q Consensus 169 -------~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~ 240 (539)
...++++|++||.+..+++++.+ ||+.++.+++|+.+++..++..++.......+ ..+..++..+.| ++
T Consensus 128 ~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 204 (324)
T 1hqc_A 128 AARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TM 204 (324)
T ss_dssp SCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CH
T ss_pred cccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CH
Confidence 11357899999999999999998 99889999999999999999998876544322 226778888866 78
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 241 ARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 241 ~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
+.+.++++.+...|...+...|+.+++..++....
T Consensus 205 r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 205 RVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp HHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 99999999988877666777899999998887653
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.83 E-value=2.1e-21 Score=210.37 Aligned_cols=247 Identities=21% Similarity=0.233 Sum_probs=157.2
Q ss_pred ccccccccchhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 4 QIKMCSFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.++|................-.++++|+++++..+.+.+....... .. ++..++|+||||||||++|+++|+.+
T Consensus 59 ~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 59 ALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred cCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3455544443333333344456779999999999987654311110 11 45679999999999999999999999
Q ss_pred CCCEEEEeCchhhH---------HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHH
Q 009263 84 GVPFYQMAGSEFVE---------VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 154 (539)
Q Consensus 84 ~~~~~~~~~~~~~~---------~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (539)
+.++..+++..+.. .+.|.....+...|..+....| ||||||||.+....++
T Consensus 133 ~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~------------------ 193 (543)
T 3m6a_A 133 GRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG------------------ 193 (543)
T ss_dssp TCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------------
T ss_pred CCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc------------------
Confidence 99999998876543 3555555666777887766666 9999999998765431
Q ss_pred HHHHHHHHHhcCCCC-------------CCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc--
Q 009263 155 TTLNQLLIELDGFDT-------------GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-- 219 (539)
Q Consensus 155 ~~l~~ll~~ld~~~~-------------~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~-- 219 (539)
...+.|+..++.... ..+++||+|||.++.++++|++ ||+ +|.++.|+.+++..|++.++..
T Consensus 194 ~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~ 270 (543)
T 3m6a_A 194 DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQ 270 (543)
T ss_dssp ----CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHH
Confidence 123455555553211 1568999999999999999999 995 7899999999999999987622
Q ss_pred ---CCCC---CCCC---HHHHHh-hCCCCCHHHHHHHHH----HHHHHHHHh--CCCCCchhhHHHHHHHHhcCC
Q 009263 220 ---VKMS---DSVD---LSSYAK-NLPGWTGARLAQLVQ----EAALVAVRK--GHESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 220 ---~~~~---~~~~---~~~la~-~t~g~s~~dl~~lv~----~A~~~A~~~--~~~~I~~~d~~~a~~~~~~g~ 278 (539)
..+. ..++ +..++. .+.....++|++.+. .|...+.+. +...|+.+++.+++.......
T Consensus 271 ~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~~ 345 (543)
T 3m6a_A 271 IKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIFRY 345 (543)
T ss_dssp HHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCCSCC
T ss_pred HHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcccCc
Confidence 2221 1112 444444 332234556555544 444444333 334799999999987655433
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=9.1e-20 Score=180.45 Aligned_cols=237 Identities=18% Similarity=0.258 Sum_probs=150.1
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
|++..+.-.......++|.++..+.+......+. ..+...+..++.++||+||||||||++|+++|+.++.+++.+++
T Consensus 20 fg~~~~~l~~~~~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 20 FGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp -----CCSTTTCTTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCCHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC
Confidence 3334444444456778999888776665322111 11122234577899999999999999999999999999999987
Q ss_pred chhh-HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-CC
Q 009263 93 SEFV-EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-TG 170 (539)
Q Consensus 93 ~~~~-~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-~~ 170 (539)
++.. ....+.....++.+|..+....+++|||||+|.+...+.... ......++.|...+++.. ..
T Consensus 98 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~------------~~~~~~l~~L~~~~~~~~~~~ 165 (272)
T 1d2n_A 98 PDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP------------RFSNLVLQALLVLLKKAPPQG 165 (272)
T ss_dssp GGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT------------BCCHHHHHHHHHHTTCCCSTT
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh------------hHHHHHHHHHHHHhcCccCCC
Confidence 6522 111222335678888888878899999999999975543110 011334555556666543 34
Q ss_pred CcEEEEEecCCCCcCCc-cccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCC----CHHHHHH
Q 009263 171 KGVIFLAATNRRDLLDP-ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGW----TGARLAQ 245 (539)
Q Consensus 171 ~~vivIaatn~~~~ld~-al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~----s~~dl~~ 245 (539)
.+++||+|||.++.+++ .+.+ ||+..+.+|+++. |.+|.........+ .+.++..++..+.|+ +.+++.+
T Consensus 166 ~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~ 240 (272)
T 1d2n_A 166 RKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLM 240 (272)
T ss_dssp CEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHH
T ss_pred CCEEEEEecCChhhcchhhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHH
Confidence 57889999999998888 5665 9998888865554 34444433333333 233478888888886 5666666
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 009263 246 LVQEAALVAVRKGHESILSSDMDDAVDR 273 (539)
Q Consensus 246 lv~~A~~~A~~~~~~~I~~~d~~~a~~~ 273 (539)
+++.|...+ .....+++..++..
T Consensus 241 ~l~~a~~~~-----~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 241 LIEMSLQMD-----PEYRVRKFLALLRE 263 (272)
T ss_dssp HHHHHTTSC-----GGGHHHHHHHHHHH
T ss_pred HHHHHhhhc-----hHHHHHHHHHHHHH
Confidence 666554322 23444555555544
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=9.9e-20 Score=182.99 Aligned_cols=237 Identities=24% Similarity=0.334 Sum_probs=159.6
Q ss_pred CcccCcHHHHHHHHHHHHH-hcChhhhhhc-CCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH-HHhhh
Q 009263 26 SDVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVGV 102 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~-g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~-~~~g~ 102 (539)
++|+|++++++.+...+.. +........+ +...+.++||+||||||||++|+++++.++.+++.++++.+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999887754 2221111000 1135678999999999999999999999999999999998765 34443
Q ss_pred h-hHHHHHHHHHH-----HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC--------
Q 009263 103 G-SARIRDLFKRA-----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-------- 168 (539)
Q Consensus 103 ~-~~~~~~~f~~a-----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-------- 168 (539)
. ...++.++..+ ....++||||||+|.+........ .........+.|+..+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~----------~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG----------ADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS----------SHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc----------cchhHHHHHHHHHHHhcCCeEecccccc
Confidence 2 23455555432 112367999999999986543211 11122334566777776531
Q ss_pred CCCcEEEEEe----cCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHh-----------ccCCCC---CCCCHHH
Q 009263 169 TGKGVIFLAA----TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA-----------SKVKMS---DSVDLSS 230 (539)
Q Consensus 169 ~~~~vivIaa----tn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l-----------~~~~~~---~~~~~~~ 230 (539)
...++++|++ ++.+..+++++++ ||+.++.|++|+.+++.+|++..+ ...... .+..+..
T Consensus 165 ~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (310)
T 1ofh_A 165 KTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 242 (310)
T ss_dssp ECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHH
T ss_pred cCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHH
Confidence 2346788888 4577889999998 999899999999999999998311 111211 1112555
Q ss_pred HHhhC-------CCCCHHHHHHHHHHHHHHHHHhC-----CC-CCchhhHHHHHHHH
Q 009263 231 YAKNL-------PGWTGARLAQLVQEAALVAVRKG-----HE-SILSSDMDDAVDRL 274 (539)
Q Consensus 231 la~~t-------~g~s~~dl~~lv~~A~~~A~~~~-----~~-~I~~~d~~~a~~~~ 274 (539)
++..+ .+.+.+.+.++++.+...+..+. .. .|+.+++.+++...
T Consensus 243 l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 243 IAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 66554 24578999999998875543222 11 48999999988764
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.81 E-value=3.3e-19 Score=188.38 Aligned_cols=222 Identities=16% Similarity=0.216 Sum_probs=152.6
Q ss_pred CCcCcCccc-CcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeCch
Q 009263 21 TGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSE 94 (539)
Q Consensus 21 ~~~~~~dv~-G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~~~ 94 (539)
+..+|++++ |..... .+..+......+. . +.+++|+||||||||+||+++++.+ +.+++++++..
T Consensus 100 ~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp TTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 456899987 644332 2222222233321 2 5689999999999999999999988 88999999998
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEE
Q 009263 95 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 174 (539)
Q Consensus 95 ~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vi 174 (539)
+...+...........|.......++||||||+|.+..+.. . ...+..++..+ ......+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~-------------~----q~~l~~~l~~l---~~~~~~i 230 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG-------------V----QTELFHTFNEL---HDSGKQI 230 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH-------------H----HHHHHHHHHHH---HTTTCEE
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH-------------H----HHHHHHHHHHH---HHCCCeE
Confidence 87655443322222334444433688999999999864311 1 11122222222 2233455
Q ss_pred EEEecCCCCc---CCccccCCCccc--eeeecCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHHhhCCCCCHHHHHHHHH
Q 009263 175 FLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQ 248 (539)
Q Consensus 175 vIaatn~~~~---ld~al~r~gRf~--~~i~v~~P~~~er~~il~~~l~~~~~~~~~-~~~~la~~t~g~s~~dl~~lv~ 248 (539)
||++.+.+.. +++++++ ||. .++.+++|+.++|..|++..+...++..+. .+..++..+.| +.+++.++++
T Consensus 231 Iitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~ 307 (440)
T 2z4s_A 231 VICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAII 307 (440)
T ss_dssp EEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 5655555554 7889998 886 789999999999999999988754433222 27788888877 8999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 249 EAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 249 ~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
.+...|...+. .|+.+++.+++....
T Consensus 308 ~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 308 KLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 99999876664 699999999988764
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.80 E-value=1.5e-18 Score=179.58 Aligned_cols=223 Identities=19% Similarity=0.180 Sum_probs=159.7
Q ss_pred CcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCch
Q 009263 24 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 94 (539)
Q Consensus 24 ~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~ 94 (539)
.+++++|.++..+.+...+..... ...+.+++|+||||||||++++++++.+ +.+++++++..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 448999999998888776543211 1356789999999999999999999988 88899999875
Q ss_pred hhHHH------h----------hhhhHH-HHHHHHHHHhC-CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHH
Q 009263 95 FVEVL------V----------GVGSAR-IRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 156 (539)
Q Consensus 95 ~~~~~------~----------g~~~~~-~~~~f~~a~~~-~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (539)
..+.. . +..... ...++...... .|+||||||+|.+.... .....
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-----------------~~~~~ 151 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-----------------GGQDL 151 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-----------------THHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-----------------CCChH
Confidence 33211 0 111222 33444443333 47899999999986431 01345
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCC---CcCCccccCCCccce-eeecCCCCHHHHHHHHHHHhcc----CCCCCCCCH
Q 009263 157 LNQLLIELDGFDTGKGVIFLAATNRR---DLLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASK----VKMSDSVDL 228 (539)
Q Consensus 157 l~~ll~~ld~~~~~~~vivIaatn~~---~~ld~al~r~gRf~~-~i~v~~P~~~er~~il~~~l~~----~~~~~~~~~ 228 (539)
+..++..++....+.++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.++++..+.. ..+.+ ..+
T Consensus 152 l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~ 228 (387)
T 2v1u_A 152 LYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP-DVV 228 (387)
T ss_dssp HHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS-SHH
T ss_pred HHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH-HHH
Confidence 66677666544325678889999887 678889988 8875 8999999999999999988764 22222 225
Q ss_pred HHHHhhCC---CCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 229 SSYAKNLP---GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 229 ~~la~~t~---g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
..++..+. | +++.+.++++.|...|..++...|+.+++..|+....
T Consensus 229 ~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 229 PLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 66666665 6 7889999999999999888888999999999998763
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.79 E-value=2.1e-18 Score=163.77 Aligned_cols=209 Identities=22% Similarity=0.252 Sum_probs=149.6
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCE
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPF 87 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~ 87 (539)
+..|....++.+|++++|.++.++.+.+.+.. ..+.+++|+||||||||++++++++.+ ..++
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~ 71 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNF 71 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHT------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGE
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccce
Confidence 34566778899999999999998888877642 122359999999999999999999976 4568
Q ss_pred EEEeCchhhHHHhhhhhHHHHHHHHHHH------hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHH
Q 009263 88 YQMAGSEFVEVLVGVGSARIRDLFKRAK------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLL 161 (539)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~~~~~~f~~a~------~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 161 (539)
+.+++...... ..+...+.... ...+++|+|||+|.+.... .+.|+
T Consensus 72 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~----------------------~~~l~ 123 (226)
T 2chg_A 72 IEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA----------------------QAALR 123 (226)
T ss_dssp EEEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHH----------------------HHHHH
T ss_pred EEeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHH----------------------HHHHH
Confidence 88887654321 12222222221 2467899999999875321 22333
Q ss_pred HHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHHhhCCCCCH
Q 009263 162 IELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTG 240 (539)
Q Consensus 162 ~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~ 240 (539)
..++. ...++.+|++||.+..+++++.+ ||. .+.+++|+.++..+++..++...+.. .+..+..++..+.| ++
T Consensus 124 ~~l~~--~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~ 197 (226)
T 2chg_A 124 RTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DF 197 (226)
T ss_dssp HHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHHh--cCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 33332 23567888899999999999998 887 89999999999999999888654432 12236677777766 67
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 241 ARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 241 ~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
+.+.++++.+...+ ..|+.+++++++.
T Consensus 198 r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 198 RKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 78777777766543 6899999998875
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.79 E-value=4e-19 Score=187.61 Aligned_cols=211 Identities=19% Similarity=0.288 Sum_probs=151.4
Q ss_pred eecCCCCcCcCcccCcHHHH---HHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 16 FSQGSTGVKFSDVAGIDEAV---EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k---~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
|.....+.+|++++|++.++ ..|...+..- ...++||+||||||||++|+++++.++.+|+.+++
T Consensus 16 la~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp HHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred hHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 44556789999999999998 5565555421 12589999999999999999999999999999987
Q ss_pred chhhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 009263 93 SEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 168 (539)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 168 (539)
... +...++..|..+. ...++||||||||.+.... .+.|+..++.
T Consensus 84 ~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~----------------------q~~LL~~le~-- 132 (447)
T 3pvs_A 84 VTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ----------------------QDAFLPHIED-- 132 (447)
T ss_dssp TTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------------------CCHHHHHT--
T ss_pred ccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH----------------------HHHHHHHHhc--
Confidence 542 2234455555443 3467899999999986432 2234455542
Q ss_pred CCCcEEEEEec--CCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC--------CCCCHHHHHhhCCCC
Q 009263 169 TGKGVIFLAAT--NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS--------DSVDLSSYAKNLPGW 238 (539)
Q Consensus 169 ~~~~vivIaat--n~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~--------~~~~~~~la~~t~g~ 238 (539)
..+++|++| |....++++|++ |+. ++.+++|+.+++..+++.++...... .+..+..++..+.|
T Consensus 133 --~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G- 206 (447)
T 3pvs_A 133 --GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG- 206 (447)
T ss_dssp --TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-
T ss_pred --CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-
Confidence 346666665 444579999999 875 77899999999999999998762211 11126777888766
Q ss_pred CHHHHHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHh
Q 009263 239 TGARLAQLVQEAALVAVRK--GHESILSSDMDDAVDRLT 275 (539)
Q Consensus 239 s~~dl~~lv~~A~~~A~~~--~~~~I~~~d~~~a~~~~~ 275 (539)
+.+.+.++++.+...+... +...||.+++.+++.+..
T Consensus 207 d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 207 DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhh
Confidence 7889999999888776423 446799999999987543
No 43
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.78 E-value=6.5e-20 Score=191.39 Aligned_cols=169 Identities=24% Similarity=0.285 Sum_probs=79.9
Q ss_pred CcccCcHHHHHHHHHHHHH-hcChhhhhhcCC-CCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH-HHhhh
Q 009263 26 SDVAGIDEAVEELQELVRY-LKNPELFDKMGI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVGV 102 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~-~~~g~ 102 (539)
++|+|++++|+.|...+.. ++.+..+..+.. .+++++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999887754 444443333333 25789999999999999999999999999999999999888 48885
Q ss_pred -hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe-cC
Q 009263 103 -GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA-TN 180 (539)
Q Consensus 103 -~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa-tn 180 (539)
....++.+|..+... +++||++.+.... .......+++.|+..||++.....+ +++ ||
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~--------------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN 154 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA--------------EDVAEERILDALLPPAKNQWGEVEN--HDSHSS 154 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc--------------hhhHHHHHHHHHHHHhhcccccccc--cccccc
Confidence 678889999988765 4578887765332 1222357899999999998776554 444 99
Q ss_pred CCCcCCccccCCCccceeeecCCCCHH-HHHHHHH
Q 009263 181 RRDLLDPALLRPGRFDRKIRIRAPNAK-GRTEILK 214 (539)
Q Consensus 181 ~~~~ld~al~r~gRf~~~i~v~~P~~~-er~~il~ 214 (539)
+++.+|++|+|+||||+.|++++|+.. .|.+|+.
T Consensus 155 ~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 155 TRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp -----------------------------------
T ss_pred CHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 999999999999999999999999987 7777764
No 44
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=2.3e-18 Score=177.67 Aligned_cols=222 Identities=21% Similarity=0.247 Sum_probs=147.3
Q ss_pred cccCcHHHHHHHHHHHHHh-cChhhh-h-hcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH-Hhhh
Q 009263 27 DVAGIDEAVEELQELVRYL-KNPELF-D-KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-LVGV 102 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~l-~~~~~~-~-~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~-~~g~ 102 (539)
.|+|++.+++.+...+... ...... . .....++.++||+||||||||++|+++|+.++.||+.++++++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3799999999998877531 111100 0 0011367789999999999999999999999999999999988743 6676
Q ss_pred h-hHHHHHHHHHH----HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC---------
Q 009263 103 G-SARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--------- 168 (539)
Q Consensus 103 ~-~~~~~~~f~~a----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~--------- 168 (539)
. ...+..+|..+ ....++||||||+|.+...+.+.... .......+.+.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~--------~~~~~~~~~~~Ll~~leg~~~~~~~~~~~ 167 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSIT--------RDVSGEGVQQALLKLIEGTVAAVPPQGGR 167 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC-----------CHHHHHHHHHHHHHHHHCC----------
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccc--------cccchHHHHHHHHHHhcCceeeccCcccc
Confidence 5 45567777665 33457899999999998765432111 12222346778888887421
Q ss_pred ----------CCCcEEEEEecCCC----------Cc-----------------------------------CCccccCCC
Q 009263 169 ----------TGKGVIFLAATNRR----------DL-----------------------------------LDPALLRPG 193 (539)
Q Consensus 169 ----------~~~~vivIaatn~~----------~~-----------------------------------ld~al~r~g 193 (539)
...++++|+++|.. .. +.|+|+.
T Consensus 168 ~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~-- 245 (363)
T 3hws_A 168 KHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG-- 245 (363)
T ss_dssp ------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--
T ss_pred ccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--
Confidence 22344555555532 11 6788887
Q ss_pred ccceeeecCCCCHHHHHHHHHH----Hhcc-------CCCCCCCC---HHHHHh--hCCCCCHHHHHHHHHHHHHHHHHh
Q 009263 194 RFDRKIRIRAPNAKGRTEILKI----HASK-------VKMSDSVD---LSSYAK--NLPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 194 Rf~~~i~v~~P~~~er~~il~~----~l~~-------~~~~~~~~---~~~la~--~t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
||+.++.+++|+.+++.+|+.. ++.. ......++ ++.++. ....+..++|+++++++...+..+
T Consensus 246 R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 246 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999886 2211 11111112 445553 233455788888888888777665
Q ss_pred C
Q 009263 258 G 258 (539)
Q Consensus 258 ~ 258 (539)
.
T Consensus 326 ~ 326 (363)
T 3hws_A 326 L 326 (363)
T ss_dssp T
T ss_pred c
Confidence 3
No 45
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.77 E-value=2.2e-17 Score=168.27 Aligned_cols=221 Identities=23% Similarity=0.260 Sum_probs=161.4
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
|.....+.+|++++|.+.+++.+...+..-+.+ ..++.+++|+||||+|||+|++++|+.++.++...++..+
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 556677789999999999988887766542211 1345689999999999999999999999999888777654
Q ss_pred hHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-------
Q 009263 96 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD------- 168 (539)
Q Consensus 96 ~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~------- 168 (539)
.. ...+...+.. ...++|+||||++.+.... ...+ +..++...
T Consensus 88 ~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~~-------------------~e~L---~~~~~~~~~~i~~~~ 137 (334)
T 1in4_A 88 VK------QGDMAAILTS--LERGDVLFIDEIHRLNKAV-------------------EELL---YSAIEDFQIDIMIGK 137 (334)
T ss_dssp CS------HHHHHHHHHH--CCTTCEEEEETGGGCCHHH-------------------HHHH---HHHHHTSCCCC----
T ss_pred cC------HHHHHHHHHH--ccCCCEEEEcchhhcCHHH-------------------HHHH---HHHHHhcccceeecc
Confidence 32 1122333322 2346799999999875421 1111 11111110
Q ss_pred ---------CCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCC
Q 009263 169 ---------TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGW 238 (539)
Q Consensus 169 ---------~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~ 238 (539)
.-..+.++++|+.+..+++.+++ ||...+.+++|+.+++.++++..........+ ..+..++..+.|
T Consensus 138 ~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G- 214 (334)
T 1in4_A 138 GPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG- 214 (334)
T ss_dssp -----------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-
T ss_pred CcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-
Confidence 01246777899999999999999 99988999999999999999988765443322 126778888887
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 239 TGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 239 s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
+++.+.++++.+...|..++...|+.+++.+++.....
T Consensus 215 ~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~ 252 (334)
T 1in4_A 215 TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCC
Confidence 78999999999999998888889999999999998643
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=1.9e-18 Score=186.48 Aligned_cols=230 Identities=19% Similarity=0.261 Sum_probs=149.9
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhc--ChhhhhhcCC---CCCceEEEECCCCCcHHHHHHHHHHhcCCCE
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLK--NPELFDKMGI---KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF 87 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~--~~~~~~~~g~---~~~~giLL~GppGtGKT~la~alA~~~~~~~ 87 (539)
..+|.++++|.+|++|+|.+.+++.|.+.+.... .+..++..|. .+++++||+||||||||++|+++|++++.++
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 3578888999999999999999999988876421 1222333333 2568999999999999999999999999999
Q ss_pred EEEeCchhhHHHhhhhhH-------HHHHHHHHH-----HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHH
Q 009263 88 YQMAGSEFVEVLVGVGSA-------RIRDLFKRA-----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 155 (539)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~-------~~~~~f~~a-----~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (539)
+.++++++.........- .+...|..+ ....++||||||+|.+....+.
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~------------------- 166 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG------------------- 166 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT-------------------
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH-------------------
Confidence 999998765542211100 022233332 2356789999999998653211
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCC--CCCCCCHHHHHh
Q 009263 156 TLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK--MSDSVDLSSYAK 233 (539)
Q Consensus 156 ~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~--~~~~~~~~~la~ 233 (539)
.++.|+..++. ....+++|+++.....++ .+. |+...+.|++|+.+++.+++...+.... +.++ .+..++.
T Consensus 167 ~l~~L~~~l~~--~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~ 239 (516)
T 1sxj_A 167 GVGQLAQFCRK--TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQ 239 (516)
T ss_dssp HHHHHHHHHHH--CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHH
T ss_pred HHHHHHHHHHh--cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 12233333321 223455554444333443 343 4567899999999999999988775533 3332 3788888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 009263 234 NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 234 ~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
.+.| +.+.+.+++.. .+. +...|+.+++..++...
T Consensus 240 ~s~G-diR~~i~~L~~---~~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 240 TTRG-DIRQVINLLST---IST--TTKTINHENINEISKAW 274 (516)
T ss_dssp HTTT-CHHHHHHHHTH---HHH--HSSCCCTTHHHHHHHHH
T ss_pred HcCC-cHHHHHHHHHH---HHh--cCCCCchHHHHHHHHhh
Confidence 8866 44444444433 332 34578988888877643
No 47
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.77 E-value=4e-18 Score=172.91 Aligned_cols=209 Identities=16% Similarity=0.150 Sum_probs=141.4
Q ss_pred chhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 12 YFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
....|.++++|.+|++++|++++++.|.+.+.. ...|..+|++||||||||++|+++|++++.++++++
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 445788889999999999999999888887761 245667889999999999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHHHhC-----CCeEEEEeCcchhh-hhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 009263 92 GSEFVEVLVGVGSARIRDLFKRAKVN-----KPSVIFIDEIDALA-TRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 165 (539)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~f~~a~~~-----~p~Il~iDEiD~l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 165 (539)
+++.. ...++..+..+... .++||||||+|.+. .. ..+.|+..++
T Consensus 81 ~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~----------------------~~~~L~~~le 131 (324)
T 3u61_B 81 GSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE----------------------SQRHLRSFME 131 (324)
T ss_dssp TTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH----------------------HHHHHHHHHH
T ss_pred ccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH----------------------HHHHHHHHHH
Confidence 87643 22344433333222 56899999999985 22 1223333333
Q ss_pred CCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhc-------cCCCCC-C-CCHHHHHhhCC
Q 009263 166 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS-------KVKMSD-S-VDLSSYAKNLP 236 (539)
Q Consensus 166 ~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~-------~~~~~~-~-~~~~~la~~t~ 236 (539)
. ...++.+|++||.+..+++++.+ ||. ++.|++|+.+++.+|++.++. ...+.- + ..+..++..+.
T Consensus 132 ~--~~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (324)
T 3u61_B 132 A--YSSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNF 206 (324)
T ss_dssp H--HGGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTC
T ss_pred h--CCCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCC
Confidence 2 12467888899999999999999 885 799999999998776654432 222221 2 23677788776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 237 GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 237 g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
| +.+++.+.+..+. ....|+.+++..++.
T Consensus 207 g-d~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 207 P-DFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp S-CTTHHHHHHHHHG------GGTCBCC--------
T ss_pred C-CHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 6 4455555555443 234588888877654
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.76 E-value=5.8e-18 Score=171.77 Aligned_cols=198 Identities=17% Similarity=0.226 Sum_probs=134.4
Q ss_pred CCCcCcCccc-Cc--HHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 20 STGVKFSDVA-GI--DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 20 ~~~~~~~dv~-G~--~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
.+..+|++++ |. ..+...+..++ ..+. ..+.+++|+||||||||++|+++++.+ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~---~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEAL---ENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHH---HTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHH---hCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4667899997 53 33444444333 2221 245689999999999999999999988 8999999999
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcE
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 173 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 173 (539)
++...+.+.........|.... ..+++|||||+|.+..++. . ...+..++..+ ......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~-------------~----~~~l~~~l~~~---~~~~~~ 133 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKER-------------T----QIEFFHIFNTL---YLLEKQ 133 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHH-------------H----HHHHHHHHHHH---HHTTCE
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChH-------------H----HHHHHHHHHHH---HHCCCe
Confidence 8876655443322223333333 2477999999999864311 1 11122222221 122345
Q ss_pred EEEEecCCCC---cCCccccCCCccc--eeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCCCHHHHHHHH
Q 009263 174 IFLAATNRRD---LLDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLV 247 (539)
Q Consensus 174 ivIaatn~~~---~ld~al~r~gRf~--~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~dl~~lv 247 (539)
+|+++++.+. .+++++.+ ||. .++.+++ +.+++..|++.++......-+ ..+..++..+ | +.+++.+++
T Consensus 134 iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l 208 (324)
T 1l8q_A 134 IILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKI 208 (324)
T ss_dssp EEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHH
T ss_pred EEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHH
Confidence 7777777766 58899998 886 6889999 999999999999876544322 2267788888 5 789999998
Q ss_pred HHHHHH
Q 009263 248 QEAALV 253 (539)
Q Consensus 248 ~~A~~~ 253 (539)
+.+...
T Consensus 209 ~~~~~~ 214 (324)
T 1l8q_A 209 KLIKLK 214 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887765
No 49
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=9.2e-18 Score=173.86 Aligned_cols=212 Identities=24% Similarity=0.290 Sum_probs=151.9
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----------CCCEEEEeCc
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----------GVPFYQMAGS 93 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----------~~~~~~~~~~ 93 (539)
.++++|.++.++.+...+...... ..+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 488999999999998877643222 346689999999999999999999987 8999999976
Q ss_pred hhh-HH------Hh-----------hhh-hHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHH
Q 009263 94 EFV-EV------LV-----------GVG-SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 154 (539)
Q Consensus 94 ~~~-~~------~~-----------g~~-~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (539)
... +. .. +.. ...+..++..+... ++||+|||+|.+..... .
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~------------------~ 151 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG------------------G 151 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT------------------S
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC------------------C
Confidence 543 11 01 111 12233344433333 34999999999865321 1
Q ss_pred HH-HHHHHHHhcCCCCCCcEEEEEecCCC---CcCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc----CCCCCCC
Q 009263 155 TT-LNQLLIELDGFDTGKGVIFLAATNRR---DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK----VKMSDSV 226 (539)
Q Consensus 155 ~~-l~~ll~~ld~~~~~~~vivIaatn~~---~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~----~~~~~~~ 226 (539)
.. +..++... .++.+|++||.+ +.+++++.+ ||+..+.|++|+.++..++++.++.. ..+.+ .
T Consensus 152 ~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~ 222 (384)
T 2qby_B 152 DIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD-E 222 (384)
T ss_dssp HHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS-H
T ss_pred ceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH-H
Confidence 12 33333222 678888999987 678899888 88889999999999999999998763 22222 2
Q ss_pred CHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 227 DLSSYAKNLP---GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 227 ~~~~la~~t~---g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
.+..++..+. | +++.+.++++.|...|. +...|+.+++..++....
T Consensus 223 ~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 223 ILSYIAAISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 2556666655 5 67888889999988775 567899999999988763
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.75 E-value=1.1e-17 Score=161.20 Aligned_cols=207 Identities=14% Similarity=0.156 Sum_probs=140.5
Q ss_pred CCCcCcCcccCc---HHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 20 STGVKFSDVAGI---DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 20 ~~~~~~~dv~G~---~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
.++.+|++++|. +.+.+.+..++. . ..+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 345899999973 344444444432 1 245689999999999999999999877 4788999988
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcE
Q 009263 94 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 173 (539)
Q Consensus 94 ~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 173 (539)
++...+.. .+.. ...+++|+|||+|.+..... ....+..++... .....+
T Consensus 90 ~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~~~-----------------~~~~l~~~l~~~---~~~~~~ 139 (242)
T 3bos_A 90 IHASISTA--------LLEG--LEQFDLICIDDVDAVAGHPL-----------------WEEAIFDLYNRV---AEQKRG 139 (242)
T ss_dssp GGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTCHH-----------------HHHHHHHHHHHH---HHHCSC
T ss_pred HHHHHHHH--------HHHh--ccCCCEEEEeccccccCCHH-----------------HHHHHHHHHHHH---HHcCCC
Confidence 77654211 1111 13467999999999754310 012222232222 122233
Q ss_pred -EEEEecCCCC---cCCccccCCCccc--eeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCCCHHHHHHH
Q 009263 174 -IFLAATNRRD---LLDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQL 246 (539)
Q Consensus 174 -ivIaatn~~~---~ld~al~r~gRf~--~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~dl~~l 246 (539)
+|+++++.+. .+++.+.+ ||. .++.+++|+.+++.+++..++.......+ ..+..++..+.| +.+++.++
T Consensus 140 ~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~ 216 (242)
T 3bos_A 140 SLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDV 216 (242)
T ss_dssp EEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHH
T ss_pred eEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHH
Confidence 5554444444 35577887 775 89999999999999999998875543322 226777888876 89999999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 247 VQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 247 v~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
++.+...|..++ ..|+.+++.+++.
T Consensus 217 l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 217 LDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 999998886655 4699999998874
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.75 E-value=3.5e-17 Score=157.28 Aligned_cols=210 Identities=20% Similarity=0.301 Sum_probs=150.7
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC------
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------ 86 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~------ 86 (539)
+..|...+.+..|++++|.+..++.|...+..- ..+..++|+||||+|||++++++++.+...
T Consensus 10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~ 78 (250)
T 1njg_A 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 78 (250)
T ss_dssp -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS
T ss_pred HHHHhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 455677788999999999999999888776531 234579999999999999999999987432
Q ss_pred ------------------EEEEeCchhhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhh
Q 009263 87 ------------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDH 144 (539)
Q Consensus 87 ------------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~ 144 (539)
++.++... ......++.++..+. ...+.+|+|||+|.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------ 140 (250)
T 1njg_A 79 PCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------ 140 (250)
T ss_dssp CCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------
T ss_pred CCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH------------
Confidence 22222221 012233445555432 23578999999998632
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC-
Q 009263 145 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS- 223 (539)
Q Consensus 145 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~- 223 (539)
..++.|+..++. .+.++.+|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++......
T Consensus 141 ----------~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~ 205 (250)
T 1njg_A 141 ----------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAH 205 (250)
T ss_dssp ----------HHHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCB
T ss_pred ----------HHHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 224455555553 24578888899988899999888 64 689999999999999999988754432
Q ss_pred CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 224 DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 224 ~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
.+..+..++..+.| +++.+.++++.|... +...|+.+++++++
T Consensus 206 ~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 206 EPRALQLLARAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp CHHHHHHHHHHHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 12236778888877 899999999888543 33579999998875
No 52
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.75 E-value=2.6e-17 Score=168.33 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=140.0
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC-------C
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------P 86 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~-------~ 86 (539)
.+.....++.+|++++|++.+++.+.... + .+ .+.++||+||||||||++|+++++.++. +
T Consensus 12 ~~~~~~~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~ 79 (350)
T 1g8p_A 12 ASGAKTRPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP 79 (350)
T ss_dssp ------CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT
T ss_pred ccCCCCCCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccc
Confidence 34445567889999999999776543221 1 11 2346999999999999999999998863 2
Q ss_pred --------------------------EEEEeCchhhHHHhhhhhHHHHHHHHHH---------HhCCCeEEEEeCcchhh
Q 009263 87 --------------------------FYQMAGSEFVEVLVGVGSARIRDLFKRA---------KVNKPSVIFIDEIDALA 131 (539)
Q Consensus 87 --------------------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a---------~~~~p~Il~iDEiD~l~ 131 (539)
++.+..........|.. .+...+... ....++||||||+|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~ 157 (350)
T 1g8p_A 80 VSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE 157 (350)
T ss_dssp TCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC
T ss_pred ccccccccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC
Confidence 22221111111111110 011112211 11236799999999875
Q ss_pred hhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC----C-------CCCCcEEEEEecCCCC-cCCccccCCCccceee
Q 009263 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG----F-------DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKI 199 (539)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~----~-------~~~~~vivIaatn~~~-~ld~al~r~gRf~~~i 199 (539)
... .+.|+..++. + ..+.++++|++||..+ .++++|++ ||+.++
T Consensus 158 ~~~----------------------~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~ 213 (350)
T 1g8p_A 158 DHI----------------------VDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSV 213 (350)
T ss_dssp HHH----------------------HHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEE
T ss_pred HHH----------------------HHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEE
Confidence 331 2233333321 1 1123689999999755 89999999 999889
Q ss_pred ecCCC-CHHHHHHHHHHHhc-------------------------------cCCCCCCCCHHHHHhh---CCCCCHHHHH
Q 009263 200 RIRAP-NAKGRTEILKIHAS-------------------------------KVKMSDSVDLSSYAKN---LPGWTGARLA 244 (539)
Q Consensus 200 ~v~~P-~~~er~~il~~~l~-------------------------------~~~~~~~~~~~~la~~---t~g~s~~dl~ 244 (539)
.+++| +.+++.+|++..+. ...++++ .+..++.. ....+.+.+.
T Consensus 214 ~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~ 292 (350)
T 1g8p_A 214 EVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGEL 292 (350)
T ss_dssp ECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHH
T ss_pred EcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHH
Confidence 99999 67777788866311 1112211 13334333 2223689999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 245 QLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 245 ~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
++++.|...|..+++..|+.+|+.+|+..+...
T Consensus 293 ~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 293 TLLRSARALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 999999999998888899999999999887653
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.73 E-value=1.9e-17 Score=168.39 Aligned_cols=218 Identities=18% Similarity=0.177 Sum_probs=149.7
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh--H
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV--E 97 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~--~ 97 (539)
..+..+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.... .
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHH
T ss_pred HHHHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChh
Confidence 3445678999999998877665432 24899999999999999999999999999998874211 1
Q ss_pred HHhhhhhHH-HHHHHHHHHhCC---CeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC-------
Q 009263 98 VLVGVGSAR-IRDLFKRAKVNK---PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG------- 166 (539)
Q Consensus 98 ~~~g~~~~~-~~~~f~~a~~~~---p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~------- 166 (539)
...+..... ....|. .... .+||||||+|.+... ..+.|+..++.
T Consensus 87 ~l~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~----------------------~~~~Ll~~l~~~~~~~~g 142 (331)
T 2r44_A 87 DLIGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK----------------------VQSALLECMQEKQVTIGD 142 (331)
T ss_dssp HHHEEEEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH----------------------HHHHHHHHHHHSEEEETT
T ss_pred hcCCceeecCCCCceE--eccCcccccEEEEEccccCCHH----------------------HHHHHHHHHhcCceeeCC
Confidence 111110000 000000 0112 369999999986433 22333333331
Q ss_pred --CCCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCC----------------
Q 009263 167 --FDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS---------------- 223 (539)
Q Consensus 167 --~~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~---------------- 223 (539)
...+.++++|+|+|..+ .+++++++ ||+.++.++.|+.+++.+|++.++......
T Consensus 143 ~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (331)
T 2r44_A 143 TTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRN 220 (331)
T ss_dssp EEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHH
T ss_pred EEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHH
Confidence 12345678888888544 38999999 999899999999999999999887643211
Q ss_pred ----CCCC---HHHHHhh-------------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 224 ----DSVD---LSSYAKN-------------------LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 224 ----~~~~---~~~la~~-------------------t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
..++ +..++.. ..|.|++.+..+++.|...|..+++..|+.+|+.+++..+...
T Consensus 221 ~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 221 EINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 0111 2222221 1256899999999999999999999999999999999887654
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=9.9e-17 Score=165.65 Aligned_cols=224 Identities=20% Similarity=0.252 Sum_probs=155.3
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc------CCCEEEEeCchh
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------GVPFYQMAGSEF 95 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~~~~~~~ 95 (539)
...+++++|.++..+.|.+.+..... ...+..++|+||||||||++++++++.+ +.+++++++...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34458999999998888765432111 1356689999999999999999999988 889999987643
Q ss_pred hHH------H----------hhhhhHH-HHHHHHHHHhC-CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHH
Q 009263 96 VEV------L----------VGVGSAR-IRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 157 (539)
Q Consensus 96 ~~~------~----------~g~~~~~-~~~~f~~a~~~-~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (539)
... . .+..... ...++...... .|+||+|||+|.+..... ...+
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~------------------~~~l 149 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN------------------DDIL 149 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC------------------STHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc------------------CHHH
Confidence 221 0 0111122 33344444333 389999999999875421 1234
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCCC---CcCCccccCCCccc-eeeecCCCCHHHHHHHHHHHhccCCCCCCC---CHHH
Q 009263 158 NQLLIELDGFDTGKGVIFLAATNRR---DLLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVKMSDSV---DLSS 230 (539)
Q Consensus 158 ~~ll~~ld~~~~~~~vivIaatn~~---~~ld~al~r~gRf~-~~i~v~~P~~~er~~il~~~l~~~~~~~~~---~~~~ 230 (539)
..++..++.. ...++.+|++||.+ ..+++.+.+ ||. +.+.+++|+.++..+++...+........+ .+..
T Consensus 150 ~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 226 (386)
T 2qby_A 150 YKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKL 226 (386)
T ss_dssp HHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHH
T ss_pred HHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHH
Confidence 5555555543 34578888888876 457788877 665 589999999999999999877532111111 2455
Q ss_pred HHhhCC---CCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 231 YAKNLP---GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 231 la~~t~---g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
++..+. | +++.+.++++.|...|...+...|+.+++..|+....
T Consensus 227 l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 227 CAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 565554 5 6888888999999999888888999999999998764
No 55
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.72 E-value=1.8e-16 Score=164.20 Aligned_cols=230 Identities=16% Similarity=0.164 Sum_probs=159.6
Q ss_pred ccchhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCc--eEEEECCCCCcHHHHHHHHHHhc----
Q 009263 10 FYYFAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPH--GVLLEGPPGCGKTLVAKAIAGEA---- 83 (539)
Q Consensus 10 ~~~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~--giLL~GppGtGKT~la~alA~~~---- 83 (539)
|.....+...+. +++++|.++..+.|...+...... ..+. +++|+||||||||++++++++.+
T Consensus 4 ~~~~~~l~~~~~---p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~ 72 (389)
T 1fnn_A 4 VVDDSVFSPSYV---PKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 72 (389)
T ss_dssp BSCGGGGSTTCC---CSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred ccCHhhcCCccC---CCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 334444444443 388999999999988877642211 2334 89999999999999999999988
Q ss_pred CCCEEEEeCchhhHH------Hh----------hhhhHHHH-HHHHHHH-hCCCeEEEEeCcchhhhhhcCCcCCchhhh
Q 009263 84 GVPFYQMAGSEFVEV------LV----------GVGSARIR-DLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHL 145 (539)
Q Consensus 84 ~~~~~~~~~~~~~~~------~~----------g~~~~~~~-~~f~~a~-~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~ 145 (539)
+.+++++++...... .. +.....+. .+..... ...|.||+|||+|.+.
T Consensus 73 ~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------- 138 (389)
T 1fnn_A 73 TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------- 138 (389)
T ss_dssp CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------
T ss_pred CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------
Confidence 678899987653321 00 10111122 2222222 2458899999999872
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCC--CCcEEEEEecCCC---CcCCccccCCCccce-eeecCCCCHHHHHHHHHHHhcc
Q 009263 146 YNAATQERETTLNQLLIELDGFDT--GKGVIFLAATNRR---DLLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 146 ~~~~~~~~~~~l~~ll~~ld~~~~--~~~vivIaatn~~---~~ld~al~r~gRf~~-~i~v~~P~~~er~~il~~~l~~ 219 (539)
...++.|+..++.... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..+++...+..
T Consensus 139 --------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 139 --------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp --------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 1234555555543322 2478888888887 567888877 7775 8999999999999999988764
Q ss_pred CC---CCCCCCHHHHHhhC---------CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 220 VK---MSDSVDLSSYAKNL---------PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 220 ~~---~~~~~~~~~la~~t---------~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
.. .-.+..+..++..+ .| +++.+.++++.|...|..++...|+.+++..++....
T Consensus 209 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 209 GLAEGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HBCTTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hcCCCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 11 11222366777777 45 7899999999999999888888999999999988764
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=3e-17 Score=168.05 Aligned_cols=213 Identities=19% Similarity=0.224 Sum_probs=148.5
Q ss_pred hceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC------CCE
Q 009263 14 AMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG------VPF 87 (539)
Q Consensus 14 ~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~------~~~ 87 (539)
..|..+++|.+|++++|++++++.|...+. .. .+.++||+||||||||++|+++++.++ ..+
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~~---------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLK---SA---------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---CT---------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHh---cC---------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 356677899999999999999887766542 21 123499999999999999999999864 467
Q ss_pred EEEeCchhhHHHhhhhhHHHHHHHHHHH----------------hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhh
Q 009263 88 YQMAGSEFVEVLVGVGSARIRDLFKRAK----------------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 151 (539)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~~~~~~f~~a~----------------~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~ 151 (539)
+.+++++.... ..++..+.... ...+.||||||+|.+....
T Consensus 93 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~----------------- 149 (353)
T 1sxj_D 93 LELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA----------------- 149 (353)
T ss_dssp EEECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH-----------------
T ss_pred EEEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHH-----------------
Confidence 88887653211 11111111111 1245699999999875331
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CCCHHH
Q 009263 152 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSS 230 (539)
Q Consensus 152 ~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~~~~~ 230 (539)
.+.|+..++.. .....+|.+||.+..+++++++ |+. .+.+++|+.++...++...+...+..- +..+..
T Consensus 150 -----~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~ 219 (353)
T 1sxj_D 150 -----QSALRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLER 219 (353)
T ss_dssp -----HHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred -----HHHHHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 23344444422 2345666788999999999998 875 889999999999999998886544322 223677
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCC-CCchhhHHHHHH
Q 009263 231 YAKNLPGWTGARLAQLVQEAALVAVRKGHE-SILSSDMDDAVD 272 (539)
Q Consensus 231 la~~t~g~s~~dl~~lv~~A~~~A~~~~~~-~I~~~d~~~a~~ 272 (539)
++..+.| +.+.+.+++..+...+.+.+.. .|+.+++.+++.
T Consensus 220 l~~~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 220 ILDISAG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 8888877 6888888888877776554433 799999988765
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=7.5e-18 Score=156.14 Aligned_cols=162 Identities=22% Similarity=0.343 Sum_probs=115.2
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEE
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFY 88 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~ 88 (539)
...+.+|++++|.++..+.+.+.+. . ..+.+++|+||||||||++|+++++.+ +.+++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HHhhccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 3456789999999998777765532 1 345689999999999999999999986 78889
Q ss_pred EEeCchhhH--HHhhhhhHHHHHHHHHHH-hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 009263 89 QMAGSEFVE--VLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 165 (539)
Q Consensus 89 ~~~~~~~~~--~~~g~~~~~~~~~f~~a~-~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 165 (539)
.+++..+.. .+.+.....+..++..+. ...++||+|||+|.+....... ........+..++ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~-----------~~~~~~~~l~~~~---~ 148 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----------GAMDAGNMLKPAL---A 148 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------------CCCCHHHHHHHH---H
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc-----------chHHHHHHHHHhh---c
Confidence 988877652 344555556777777554 3568899999999987543210 0011122333333 1
Q ss_pred CCCCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHH
Q 009263 166 GFDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEIL 213 (539)
Q Consensus 166 ~~~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il 213 (539)
..++.+|++||.+. .+++++.+ ||. .+.+++|+.+++.+|+
T Consensus 149 ----~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 149 ----RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ----TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ----cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 24577888888776 68999999 998 6899999999998875
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=5e-17 Score=183.49 Aligned_cols=224 Identities=19% Similarity=0.271 Sum_probs=159.7
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEE
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQ 89 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~ 89 (539)
..+-+|++++|.++.++++.+++. . ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 345679999999998777766542 1 245689999999999999999999987 566777
Q ss_pred EeCchhh--HHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC
Q 009263 90 MAGSEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 167 (539)
Q Consensus 90 ~~~~~~~--~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 167 (539)
++...+. ..+.|....+++.+|..+....++||||||+|.+.+...... ......+. +..+
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-------------~~~~~~~~----L~~~ 310 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-------------GQVDAANL----IKPL 310 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS-------------CHHHHHHH----HSSC
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc-------------chHHHHHH----HHHH
Confidence 7777665 346677778899999998877889999999999976543210 01112222 2223
Q ss_pred CCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccC----CCC-CCCCHHHHHhh---
Q 009263 168 DTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV----KMS-DSVDLSSYAKN--- 234 (539)
Q Consensus 168 ~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~----~~~-~~~~~~~la~~--- 234 (539)
-....+.+|++||.++ .+|++|.+ ||. .+.|+.|+.+++.+||+.++... ... .+..+..++..
T Consensus 311 l~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~ 387 (758)
T 1r6b_X 311 LSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_dssp SSSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HhCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence 3456788899998653 47899999 998 69999999999999998776542 111 11113444443
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHH----hCCCCCchhhHHHHHHHHh
Q 009263 235 --LPGWTGARLAQLVQEAALVAVR----KGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 235 --t~g~s~~dl~~lv~~A~~~A~~----~~~~~I~~~d~~~a~~~~~ 275 (539)
...+.+..+..++++|...+.. .....|+.+|+..++....
T Consensus 388 ~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 388 YINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred hcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 3345677888999998877655 2356799999999998865
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.70 E-value=1.3e-16 Score=169.81 Aligned_cols=211 Identities=18% Similarity=0.265 Sum_probs=141.3
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CC
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GV 85 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~ 85 (539)
|.+...+-+|++|+|.++.++.+.+++.. ....++||+||||||||++|+++|..+ +.
T Consensus 170 l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 237 (468)
T 3pxg_A 170 LTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (468)
T ss_dssp HHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred HHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 34445677899999999998887766542 234589999999999999999999986 78
Q ss_pred CEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 009263 86 PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 165 (539)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 165 (539)
+++.+++. ..+.|....+++.+|..+....++||||| +. ....+.|+..+
T Consensus 238 ~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---------------------~~a~~~L~~~L- 287 (468)
T 3pxg_A 238 RVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------------------IDASNILKPSL- 287 (468)
T ss_dssp CEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------------------CCCT-
T ss_pred eEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---------------------hhHHHHHHHhh-
Confidence 89988887 56677777788999999988889999999 10 01122333333
Q ss_pred CCCCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC--CC---HHHHHhhC
Q 009263 166 GFDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS--VD---LSSYAKNL 235 (539)
Q Consensus 166 ~~~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~--~~---~~~la~~t 235 (539)
....+.+|++||.++ .+++++.| ||. .|.|+.|+.+++..|++.++.......+ ++ +..++..+
T Consensus 288 ---~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s 361 (468)
T 3pxg_A 288 ---ARGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLS 361 (468)
T ss_dssp ---TSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHH
T ss_pred ---cCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 245789999999887 68999999 998 5999999999999999988766322111 11 33444332
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHhCC-CCCchhhHHHHHHHH
Q 009263 236 -----PGWTGARLAQLVQEAALVAVRKGH-ESILSSDMDDAVDRL 274 (539)
Q Consensus 236 -----~g~s~~dl~~lv~~A~~~A~~~~~-~~I~~~d~~~a~~~~ 274 (539)
..+.+.....++.+|...+..+.. .......++..+.++
T Consensus 362 ~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 362 DRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 234466777888887766655443 233444555555443
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=1.2e-16 Score=165.57 Aligned_cols=237 Identities=18% Similarity=0.185 Sum_probs=141.1
Q ss_pred CcccCcHHHHHHHHHHHHH-hcChhhh-----------------hhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCE
Q 009263 26 SDVAGIDEAVEELQELVRY-LKNPELF-----------------DKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF 87 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~-l~~~~~~-----------------~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~ 87 (539)
+.|+|++.+|+.|...+.. ++..... ..-...++.++||+||||||||++|+++|+.++.|+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999987731 1111100 001124567899999999999999999999999999
Q ss_pred EEEeCchhh-HHHhhhh-hHHHHHHHHHHH----hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHH
Q 009263 88 YQMAGSEFV-EVLVGVG-SARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLL 161 (539)
Q Consensus 88 ~~~~~~~~~-~~~~g~~-~~~~~~~f~~a~----~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 161 (539)
+.+++..+. ..+.|.. ...+...+..+. ...++||||||+|.+...+.+.... .+.......+.|+
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~--------~~~~~~~~~~~Ll 172 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSIT--------RDVSGEGVQQALL 172 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC----------------------CHHHHHHHH
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCcee--------cccchHHHHHHHH
Confidence 999998865 3344443 233455554322 2357899999999998664321100 0111123566677
Q ss_pred HHhcCCC-------------------CCCcEEEEEecCCC----------------------------------------
Q 009263 162 IELDGFD-------------------TGKGVIFLAATNRR---------------------------------------- 182 (539)
Q Consensus 162 ~~ld~~~-------------------~~~~vivIaatn~~---------------------------------------- 182 (539)
..|++.. ...++++|+++|..
T Consensus 173 ~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 252 (376)
T 1um8_A 173 KIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLV 252 (376)
T ss_dssp HHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHH
T ss_pred HHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHh
Confidence 7776431 12456777777621
Q ss_pred -CcCCccccCCCccceeeecCCCCHHHHHHHHHH----Hhc-------cCCCCCCCC---HHHHHhhCC--CCCHHHHHH
Q 009263 183 -DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKI----HAS-------KVKMSDSVD---LSSYAKNLP--GWTGARLAQ 245 (539)
Q Consensus 183 -~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~----~l~-------~~~~~~~~~---~~~la~~t~--g~s~~dl~~ 245 (539)
..+.|.|.+ ||+.++.|++++.++...|+.. ++. .......++ +..++.... ....+.+.+
T Consensus 253 ~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~ 330 (376)
T 1um8_A 253 TYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRA 330 (376)
T ss_dssp HTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHH
T ss_pred hcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHH
Confidence 124566666 8888999999999999998862 111 111111111 455555532 246889999
Q ss_pred HHHHHHHHHHHhCC------CCCchhhHHHHHH
Q 009263 246 LVQEAALVAVRKGH------ESILSSDMDDAVD 272 (539)
Q Consensus 246 lv~~A~~~A~~~~~------~~I~~~d~~~a~~ 272 (539)
++..+...+..+.. ..|+.+++..+..
T Consensus 331 ~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 331 IIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 99988887665422 1467777665443
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=7.7e-17 Score=162.35 Aligned_cols=212 Identities=22% Similarity=0.271 Sum_probs=145.1
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCE
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPF 87 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~ 87 (539)
...|..++++.+|++++|++.+++.|...+. .. ..+ ++||+||||||||++|+++++.+ +.++
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~---~~--------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 71 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVE---RK--------NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNF 71 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTT---TT--------CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHC
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHh---CC--------CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCe
Confidence 3467788999999999999999888876542 11 222 49999999999999999999986 3457
Q ss_pred EEEeCchhhHHHhhhhhHHHHHHHHHH-H-hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 009263 88 YQMAGSEFVEVLVGVGSARIRDLFKRA-K-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 165 (539)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~~~~~~f~~a-~-~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 165 (539)
+.+++++.... ......+....... . ...+.||+|||+|.+... ..+.|+..++
T Consensus 72 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~----------------------~~~~L~~~le 127 (319)
T 2chq_A 72 IEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD----------------------AQAALRRTME 127 (319)
T ss_dssp EEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH----------------------HHHTTGGGTS
T ss_pred EEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH----------------------HHHHHHHHHH
Confidence 88887764321 11111122211110 1 134789999999987532 2334555554
Q ss_pred CCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhCCCCCHHHHH
Q 009263 166 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLA 244 (539)
Q Consensus 166 ~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~dl~ 244 (539)
. .+.++++|++||.+..+.+++.+ |+. .+.+++|+.+++.+++...+...+..-+ ..+..++..+.| +.+.+.
T Consensus 128 ~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~ 201 (319)
T 2chq_A 128 M--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAI 201 (319)
T ss_dssp S--SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHH
T ss_pred h--cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3 34567888899999999999998 765 8999999999999999998876554322 225667776666 566666
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 245 QLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 245 ~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
++++.+... ...|+.+++.+++
T Consensus 202 ~~l~~~~~~-----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 202 NALQGAAAI-----GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHHS-----SSCBCHHHHHHHT
T ss_pred HHHHHHHHc-----CCCCCHHHHHHHH
Confidence 666554421 3468888887664
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.1e-17 Score=161.16 Aligned_cols=160 Identities=6% Similarity=0.064 Sum_probs=112.7
Q ss_pred ccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEEEeCchhhH
Q 009263 28 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGSEFVE 97 (539)
Q Consensus 28 v~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~~~~~~~~~ 97 (539)
+.|.++..+.+...+...- ....|.+++|+||||||||++++++++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i--------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL--------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 5566666666655544311 12467899999999999999999999988 34678899866433
Q ss_pred H----------Hh------hhhhHHHHHHHHHH--HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHH
Q 009263 98 V----------LV------GVGSARIRDLFKRA--KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQ 159 (539)
Q Consensus 98 ~----------~~------g~~~~~~~~~f~~a--~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (539)
. +. +.....++..|... ....++||+|||+|.|. . +..+..
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~--------------------q~~L~~ 152 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S--------------------EKILQY 152 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C--------------------THHHHH
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c--------------------chHHHH
Confidence 2 11 12344567777764 34567899999999986 1 134555
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCc----CCccccCCCccc-eeeecCCCCHHHHHHHHHHHhccC
Q 009263 160 LLIELDGFDTGKGVIFLAATNRRDL----LDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKV 220 (539)
Q Consensus 160 ll~~ld~~~~~~~vivIaatn~~~~----ld~al~r~gRf~-~~i~v~~P~~~er~~il~~~l~~~ 220 (539)
++.... ....+++||+.+|..+. +++++.+ ||. ..|.|++++.++..+|++..+...
T Consensus 153 l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 153 FEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp HHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 555432 23467899999998764 4556666 886 689999999999999999888653
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.69 E-value=1.3e-16 Score=160.43 Aligned_cols=204 Identities=22% Similarity=0.292 Sum_probs=136.1
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH----
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV---- 98 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~---- 98 (539)
++++|++.+++.+...+......-.. ..++..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSC---TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCC---CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 46899999999998887653211000 01344579999999999999999999988 567999998876432
Q ss_pred -Hhhhh-----hHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC----
Q 009263 99 -LVGVG-----SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD---- 168 (539)
Q Consensus 99 -~~g~~-----~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~---- 168 (539)
+.|.. ......+.........+||||||+|.+... ..+.|+..++...
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~----------------------~~~~Ll~~le~~~~~~~ 151 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPD----------------------VFNILLQMLDDGRLTDS 151 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHH----------------------HHHHHHHHHHHSEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHH----------------------HHHHHHHHHhcCEEEcC
Confidence 12110 000011222233345589999999987432 2344454444211
Q ss_pred -----CCCcEEEEEecCC--------------------------CCcCCccccCCCccceeeecCCCCHHHHHHHHHHHh
Q 009263 169 -----TGKGVIFLAATNR--------------------------RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 217 (539)
Q Consensus 169 -----~~~~vivIaatn~--------------------------~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l 217 (539)
.-.++++|+|||. ...++++|++ ||+..+.+++|+.+++..|++.++
T Consensus 152 ~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 152 HGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp TSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHT
T ss_pred CCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 1136779999998 4468888998 999999999999999999999887
Q ss_pred ccCC-------CCCCC---CHHHHHhhCC--CCCHHHHHHHHHHHHHHHHH
Q 009263 218 SKVK-------MSDSV---DLSSYAKNLP--GWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 218 ~~~~-------~~~~~---~~~~la~~t~--g~s~~dl~~lv~~A~~~A~~ 256 (539)
.... ....+ .+..++...- ..+.++|+++++.+...+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 230 SYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 6521 11112 2556666544 45788999999888776543
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.67 E-value=8.4e-16 Score=158.44 Aligned_cols=208 Identities=20% Similarity=0.281 Sum_probs=149.2
Q ss_pred eecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---------
Q 009263 16 FSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 86 (539)
Q Consensus 16 ~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--------- 86 (539)
|..++.+.+|++++|++.+++.|...+..- +.+..+||+||||||||++|+++++.++..
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 74 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 456688889999999999999888876421 345578999999999999999999987542
Q ss_pred ---------------EEEEeCchhhHHHhhhhhHHHHHHHHHHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhh
Q 009263 87 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 147 (539)
Q Consensus 87 ---------------~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~ 147 (539)
++.++... ......++.++..+.. ..+.||+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------- 133 (373)
T 1jr3_A 75 VCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------- 133 (373)
T ss_dssp SSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH---------------
T ss_pred ccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH---------------
Confidence 22222211 0112235566665542 3467999999998742
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-C
Q 009263 148 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 226 (539)
Q Consensus 148 ~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~ 226 (539)
...+.|+..++. .+.++++|++|+.+..+.+.+.+ |+ ..+.+++|+.++..++++.++...+...+ .
T Consensus 134 -------~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 201 (373)
T 1jr3_A 134 -------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 (373)
T ss_dssp -------HHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHH
T ss_pred -------HHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 234556666653 34578888888888889999988 65 68999999999999999988876443322 1
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 227 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 227 ~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
.+..++..+.| +++.+.++++.+...+ ...|+.+++.+++.
T Consensus 202 a~~~l~~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 202 ALQLLARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHTT
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHhC
Confidence 26678888877 7889999988875433 35688888877653
No 65
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=4.4e-16 Score=157.05 Aligned_cols=207 Identities=17% Similarity=0.193 Sum_probs=145.4
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEE
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQ 89 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~ 89 (539)
.|..++++.+|++++|++.+++.|.+.+.. .+.+. ++|+||||+|||++|+++++.+ +.+++.
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 455678899999999999999988877541 12333 9999999999999999999986 345777
Q ss_pred EeCchhhHHHhhhhhHHHHHHHHHHH-------hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHH
Q 009263 90 MAGSEFVEVLVGVGSARIRDLFKRAK-------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 162 (539)
Q Consensus 90 ~~~~~~~~~~~g~~~~~~~~~f~~a~-------~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 162 (539)
+++++... ...++..+.... ...+.||+|||+|.+... ..+.|+.
T Consensus 78 ~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~----------------------~~~~L~~ 129 (323)
T 1sxj_B 78 LNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG----------------------AQQALRR 129 (323)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH----------------------HHHTTHH
T ss_pred ecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH----------------------HHHHHHH
Confidence 77665321 233444444433 234789999999987532 1233444
Q ss_pred HhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHHhhCCCCCHH
Q 009263 163 ELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGA 241 (539)
Q Consensus 163 ~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~~~~~la~~t~g~s~~ 241 (539)
.++. .+.++.+|++||.+..+.+++.+ |+. .+.+++|+.++..+++...+...+... +..+..++..+.| +++
T Consensus 130 ~le~--~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r 203 (323)
T 1sxj_B 130 TMEL--YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMR 203 (323)
T ss_dssp HHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhc--cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 4432 33567778888989999999998 654 899999999999999998876543321 2235677777766 677
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 242 RLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 242 dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
.+.+++..+... . ..|+.+++.+++.
T Consensus 204 ~a~~~l~~~~~~---~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 204 QAINNLQSTVAG---H--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHHHH---H--SSBCHHHHHHHHT
T ss_pred HHHHHHHHHHhc---C--CCcCHHHHHHHHC
Confidence 766666655422 1 4688888877764
No 66
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=8.1e-16 Score=155.41 Aligned_cols=212 Identities=20% Similarity=0.238 Sum_probs=144.6
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC-----CCE
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPF 87 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~ 87 (539)
...|.+++++.+|++++|++++++.|...+..- ...++||+||||||||++|+++++.+. .++
T Consensus 12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CCchhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 346777899999999999999999988776531 122599999999999999999999863 347
Q ss_pred EEEeCchhhHHHhhhhhHHHHHHHHHH--HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 009263 88 YQMAGSEFVEVLVGVGSARIRDLFKRA--KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 165 (539)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~~~~~~f~~a--~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 165 (539)
+.+++++.... ......+....... ....+.||+|||+|.+... ..+.|+..++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~----------------------~~~~L~~~le 135 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD----------------------AQQALRRTME 135 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH----------------------HHHHHHHHHH
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH----------------------HHHHHHHHHH
Confidence 78887654321 11111111111100 1145789999999987432 2334444444
Q ss_pred CCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHHhhCCCCCHHHHH
Q 009263 166 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLA 244 (539)
Q Consensus 166 ~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~~~~~la~~t~g~s~~dl~ 244 (539)
. .+.++.+|++||.+..+.+++.+ |+. .+.+++|+.++...++...+...+... +..+..++..+.| +.+.+.
T Consensus 136 ~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~ 209 (327)
T 1iqp_A 136 M--FSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAI 209 (327)
T ss_dssp H--TTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHH
T ss_pred h--cCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHH
Confidence 2 23567788889999999999988 765 789999999999999998887554321 1226677777766 677777
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 245 QLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 245 ~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
++++.+.. ....|+.+++..++
T Consensus 210 ~~l~~~~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 210 NILQAAAA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HHHHHHHT-----TCSEECHHHHHHHT
T ss_pred HHHHHHHh-----cCCCCCHHHHHHHH
Confidence 77765542 22357777776654
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=3.9e-16 Score=176.10 Aligned_cols=199 Identities=23% Similarity=0.267 Sum_probs=136.0
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhh
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV 102 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~ 102 (539)
++|+|++.+++.+.+.+......... ..++..++||+||||||||++|+++|+.+ +.+|+.++++++.+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~---~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKD---PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSC---TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 57999999999998888764422110 01223369999999999999999999987 7899999999988765443
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC---------CCCCcE
Q 009263 103 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---------DTGKGV 173 (539)
Q Consensus 103 ~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~---------~~~~~v 173 (539)
...++...+...++||||||||.+.. ..++.|+..++.- ....++
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~----------------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 621 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP----------------------DVFNILLQVLEDGRLTDSKGRTVDFRNT 621 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH----------------------HHHHHHHHHHHHSBCC-----CCBCTTC
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH----------------------HHHHHHHHHhccCeEEcCCCCEeccCCe
Confidence 11223334456678999999998642 2344555555431 123467
Q ss_pred EEEEecCCCCc------------CCccccCCCccceeeecCCCCHHHHHHHHHHHhccC-------CCCCCCC---HHHH
Q 009263 174 IFLAATNRRDL------------LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV-------KMSDSVD---LSSY 231 (539)
Q Consensus 174 ivIaatn~~~~------------ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~-------~~~~~~~---~~~l 231 (539)
++|+|||.+.. +.|+|++ ||+.+|.|++|+.+++..|++.++... .....++ +..+
T Consensus 622 ~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l 699 (758)
T 3pxi_A 622 ILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKV 699 (758)
T ss_dssp EEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred EEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHH
Confidence 99999996553 7888888 999999999999999999998877542 1111111 4555
Q ss_pred Hh--hCCCCCHHHHHHHHHHHHHHHH
Q 009263 232 AK--NLPGWTGARLAQLVQEAALVAV 255 (539)
Q Consensus 232 a~--~t~g~s~~dl~~lv~~A~~~A~ 255 (539)
+. ....+..++|+++++++...+.
T Consensus 700 ~~~~~~~~~~~R~L~~~i~~~v~~~l 725 (758)
T 3pxi_A 700 AEEGVDLEYGARPLRRAIQKHVEDRL 725 (758)
T ss_dssp HGGGCCTTTTTTTHHHHHHHHTHHHH
T ss_pred HHhCCCCCCCChHHHHHHHHHHHHHH
Confidence 44 2334567788888877655443
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.66 E-value=2.2e-16 Score=180.20 Aligned_cols=205 Identities=20% Similarity=0.282 Sum_probs=135.2
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEEE
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQ 89 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~ 89 (539)
..+-+|++++|.++....+.+++. . ..+++++|+||||||||++|+++|+.+ +.+++.
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 356789999999988777666542 1 234579999999999999999999987 889999
Q ss_pred EeCchhh--HHHhhhhhHHHHHHHHHHHhC-CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC
Q 009263 90 MAGSEFV--EVLVGVGSARIRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 166 (539)
Q Consensus 90 ~~~~~~~--~~~~g~~~~~~~~~f~~a~~~-~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 166 (539)
++++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+..... . .....+.|...++
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----------g---~~~~~~~L~~~l~- 296 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-----------G---AVDAGNMLKPALA- 296 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------------------HHHHH-
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-----------c---hHHHHHHHHHHHh-
Confidence 9998886 456777788899999988765 68999999999997553210 0 0112223333332
Q ss_pred CCCCCcEEEEEecCCCC----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC--C---CHHHHHhh---
Q 009263 167 FDTGKGVIFLAATNRRD----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS--V---DLSSYAKN--- 234 (539)
Q Consensus 167 ~~~~~~vivIaatn~~~----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~--~---~~~~la~~--- 234 (539)
...+.+|++||.++ .+++++.| ||+. +.|+.|+.+++.+|++.++.......+ + .+..++..
T Consensus 297 ---~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 297 ---RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp ---TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred ---CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 24677888888764 47999999 9985 999999999999999877654311111 1 13333332
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHh
Q 009263 235 --LPGWTGARLAQLVQEAALVAVRK 257 (539)
Q Consensus 235 --t~g~s~~dl~~lv~~A~~~A~~~ 257 (539)
+..+.+.....++.+|...+..+
T Consensus 371 ~i~~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 371 YITERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred hcccccChHHHHHHHHHHHHHHHhh
Confidence 45677888889999988777654
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=1.1e-15 Score=172.44 Aligned_cols=194 Identities=20% Similarity=0.263 Sum_probs=136.9
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCC
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVP 86 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~ 86 (539)
.+...+-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|+.+ +.+
T Consensus 171 ~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~ 238 (758)
T 3pxi_A 171 TAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (758)
T ss_dssp HHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe
Confidence 3345667899999999998888766531 244579999999999999999999997 788
Q ss_pred EEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC
Q 009263 87 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 166 (539)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 166 (539)
++.+++ ...|.|....+++.+|..+....|+||||| +. ....+.|+..+
T Consensus 239 ~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~---------------------~~~~~~L~~~l-- 287 (758)
T 3pxi_A 239 VMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------------------IDASNILKPSL-- 287 (758)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------------------CCCT--
T ss_pred EEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc---------------------hhHHHHHHHHH--
Confidence 888877 455677788889999999998899999999 10 01122333333
Q ss_pred CCCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCC-----HHHHHhh--
Q 009263 167 FDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-----LSSYAKN-- 234 (539)
Q Consensus 167 ~~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~-----~~~la~~-- 234 (539)
....+.+|++||..+ .+|+++.| ||. .|.|+.|+.+++.+||+.++........++ +..++..
T Consensus 288 --~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~ 362 (758)
T 3pxi_A 288 --ARGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSD 362 (758)
T ss_dssp --TSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHH
T ss_pred --hcCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence 245789999999888 69999999 994 699999999999999998876643222222 2333332
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHhC
Q 009263 235 ---LPGWTGARLAQLVQEAALVAVRKG 258 (539)
Q Consensus 235 ---t~g~s~~dl~~lv~~A~~~A~~~~ 258 (539)
+.++.+.....++.+|...+..+.
T Consensus 363 ~~i~~~~~p~~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 363 RYISDRFLPDKAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp HSSCCSCTTHHHHHHHHHHHHHHHHHT
T ss_pred cccccCcCCcHHHHHHHHHHHHHHhhc
Confidence 346778888888998887766553
No 70
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.64 E-value=2.7e-16 Score=167.52 Aligned_cols=211 Identities=16% Similarity=0.151 Sum_probs=132.4
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC--CCEEEEeCch-hhHHHhhh
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSE-FVEVLVGV 102 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~~~~~~-~~~~~~g~ 102 (539)
..|+|++++++.+...+. .+.++||+||||||||++|+++|+.++ .+|..+++.- ..+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 458899988876654432 234899999999999999999999884 4566655532 11222221
Q ss_pred -hhHH--HHHHHHHHHhC---CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC---------
Q 009263 103 -GSAR--IRDLFKRAKVN---KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------- 167 (539)
Q Consensus 103 -~~~~--~~~~f~~a~~~---~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--------- 167 (539)
.... -...|..+... .++|||||||+.+.. .+.+.|+..|+..
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~----------------------~~q~~LL~~lee~~v~i~G~~~ 145 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP----------------------AILNTLLTAINERQFRNGAHVE 145 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCCH----------------------HHHHHHHHHHHSSEEECSSSEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH----------------------HHHHHHHHHHHHHhccCCCCcC
Confidence 1001 12223222221 467999999987542 2344556555421
Q ss_pred CCCCcEEEEEecCCCCc---CCccccCCCccceeeecCCCCH-HHHHHHHHHHhccCCC---------------------
Q 009263 168 DTGKGVIFLAATNRRDL---LDPALLRPGRFDRKIRIRAPNA-KGRTEILKIHASKVKM--------------------- 222 (539)
Q Consensus 168 ~~~~~vivIaatn~~~~---ld~al~r~gRf~~~i~v~~P~~-~er~~il~~~l~~~~~--------------------- 222 (539)
..+.. ++|+|||.+.. +.+++++ ||...+.+++|+. +++..|++.+......
T Consensus 146 ~~~~~-~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~ 222 (500)
T 3nbx_X 146 KIPMR-LLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIG 222 (500)
T ss_dssp ECCCC-EEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHT
T ss_pred Ccchh-hhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCC
Confidence 11223 45667775322 3458888 9999999999987 6788888765431100
Q ss_pred CCCCC---HHHHHhh---------CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 223 SDSVD---LSSYAKN---------LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 223 ~~~~~---~~~la~~---------t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
...++ .+.++.. ..|.|++.+..+++.|...|..+++..|+.+|+. ++..+..
T Consensus 223 ~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 223 EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 00011 2223222 3588999999999999999999999999999998 5554443
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=9.4e-16 Score=173.07 Aligned_cols=200 Identities=22% Similarity=0.282 Sum_probs=136.0
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH-------
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV------- 98 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~------- 98 (539)
.+|+|++++++.+...+........ -..++..++||+||||||||++|+++|+.++.+++.++++++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4588999999888887764321100 001344579999999999999999999999999999999987653
Q ss_pred -----HhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-----
Q 009263 99 -----LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD----- 168 (539)
Q Consensus 99 -----~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~----- 168 (539)
|+|.... ..+....+...++||||||||.+.. ..++.|+..|+.-.
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~----------------------~~~~~Ll~~le~~~~~~~~ 590 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP----------------------DVFNILLQVMDNGTLTDNN 590 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH----------------------HHHHHHHHHHHHSEEEETT
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH----------------------HHHHHHHHHhcCcEEEcCC
Confidence 3332221 1233344456679999999998642 24556666665211
Q ss_pred ----CCCcEEEEEecCCCC-------------------------cCCccccCCCccceeeecCCCCHHHHHHHHHHHhcc
Q 009263 169 ----TGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 169 ----~~~~vivIaatn~~~-------------------------~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~ 219 (539)
.-.+++||+|||... .++|+|++ ||+.+|.|++|+.+++..|++.++..
T Consensus 591 g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 591 GRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp TEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 014688999999754 57888888 99999999999999999999988763
Q ss_pred C-------CCCCCCC---HHHHHhhC--CCCCHHHHHHHHHHHHHHH
Q 009263 220 V-------KMSDSVD---LSSYAKNL--PGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 220 ~-------~~~~~~~---~~~la~~t--~g~s~~dl~~lv~~A~~~A 254 (539)
. .....++ +..++... ..+..+.+.++++.+...+
T Consensus 669 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 669 LQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp HHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred HHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 2 1111111 44454432 2445777777777766544
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.63 E-value=1.3e-16 Score=147.39 Aligned_cols=155 Identities=23% Similarity=0.308 Sum_probs=108.4
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----------CCCEE
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFY 88 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~ 88 (539)
...+.+|++++|.++..+.+.+.+ .. ..+.+++|+||||||||++|+++++.+ +.+++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HHhccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 345678999999998877766543 22 235689999999999999999999987 77888
Q ss_pred EEeCchhhHH--HhhhhhHHHHHHHHHHHhC-CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 009263 89 QMAGSEFVEV--LVGVGSARIRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 165 (539)
Q Consensus 89 ~~~~~~~~~~--~~g~~~~~~~~~f~~a~~~-~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 165 (539)
.+++..+... +.+.....+..++..+... .|++|||||+|.+...+.... .... ..+.+...++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~----------~~~~---~~~~l~~~~~ 149 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE----------GALD---AGNILKPMLA 149 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT----------TSCC---THHHHHHHHH
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc----------cchH---HHHHHHHHHh
Confidence 8887766532 3444455667777766554 678999999999874432100 0011 1222222222
Q ss_pred CCCCCCcEEEEEecCCCC-----cCCccccCCCccceeeecCCCC
Q 009263 166 GFDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPN 205 (539)
Q Consensus 166 ~~~~~~~vivIaatn~~~-----~ld~al~r~gRf~~~i~v~~P~ 205 (539)
..++++|++||.+. .+++++.+ ||.. +.++.|+
T Consensus 150 ----~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 150 ----RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ----TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ----cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 25678888888765 58999999 9985 8899886
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=1.6e-15 Score=155.42 Aligned_cols=196 Identities=17% Similarity=0.216 Sum_probs=131.2
Q ss_pred ceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC---------
Q 009263 15 MFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--------- 85 (539)
Q Consensus 15 ~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--------- 85 (539)
+|.++++|.+|++++|++.+++.|...+. .. .+.+. ++|+||+|+|||++++++++++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~~--------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD--QP--------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT--CT--------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh--hC--------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 57788999999999999999887766531 11 12344 999999999999999999996421
Q ss_pred --------------------CEEEEeCchhhHHHhhhhhHHHHHHHHHHH--------------hCCCeEEEEeCcchhh
Q 009263 86 --------------------PFYQMAGSEFVEVLVGVGSARIRDLFKRAK--------------VNKPSVIFIDEIDALA 131 (539)
Q Consensus 86 --------------------~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~--------------~~~p~Il~iDEiD~l~ 131 (539)
+++.++..+... .....+++.+..+. ...|.||+|||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 123333222100 00012344444332 2367799999999853
Q ss_pred hhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHH
Q 009263 132 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTE 211 (539)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~ 211 (539)
.. ..+.++..++.. ..+..+|.+||.++.+.+++.+ |+ ..+.|++|+.++..+
T Consensus 148 ~~----------------------~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~ 200 (354)
T 1sxj_E 148 KD----------------------AQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEIST 200 (354)
T ss_dssp HH----------------------HHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHH
T ss_pred HH----------------------HHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHH
Confidence 21 233444444432 3457788889999999999998 76 789999999999999
Q ss_pred HHHHHhccCCCC-C-CCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 009263 212 ILKIHASKVKMS-D-SVDLSSYAKNLPGWTGARLAQLVQEAALV 253 (539)
Q Consensus 212 il~~~l~~~~~~-~-~~~~~~la~~t~g~s~~dl~~lv~~A~~~ 253 (539)
+++..+...++. . +..+..++..+.| +.+++.++++.+...
T Consensus 201 ~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 201 ILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 999888654433 2 2336778887766 677777777766543
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=3.2e-15 Score=152.62 Aligned_cols=213 Identities=20% Similarity=0.221 Sum_probs=139.4
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCC-----CE
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----PF 87 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~-----~~ 87 (539)
...|..++++.+|++++|++.+++.|...+.. | +.| +++|+||||||||++++++|+.+.. .+
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDE----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 45677889999999999999998888776542 1 223 3899999999999999999998743 35
Q ss_pred EEEeCchhhHHHhhhhhHHHHHHHHHHH------hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHH
Q 009263 88 YQMAGSEFVEVLVGVGSARIRDLFKRAK------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLL 161 (539)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~~~~~~f~~a~------~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 161 (539)
..++.++... ...++..+.... ...+.|++|||+|.+... ..+.|+
T Consensus 80 ~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~----------------------~~~~L~ 131 (340)
T 1sxj_C 80 LELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA----------------------AQNALR 131 (340)
T ss_dssp EEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH----------------------HHHHHH
T ss_pred EEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH----------------------HHHHHH
Confidence 6666554211 223333333222 123689999999987532 123444
Q ss_pred HHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHHhhCCCCCH
Q 009263 162 IELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTG 240 (539)
Q Consensus 162 ~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~-~~~~~~la~~t~g~s~ 240 (539)
..++. .+....+|.+||.+..+.+++.+ |+. .+.+++++.++..+++...+....+.- +.....++..+.| +.
T Consensus 132 ~~le~--~~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~ 205 (340)
T 1sxj_C 132 RVIER--YTKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DM 205 (340)
T ss_dssp HHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHhc--CCCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44442 23456677788999999999998 765 788999999999999988885433221 1125556666655 45
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 009263 241 ARLAQLVQEAALVAVRKGHESILSSDMDDAV 271 (539)
Q Consensus 241 ~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~ 271 (539)
+.+.++++.+...+...+...|+.+++.+++
T Consensus 206 r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 206 RRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp HHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHh
Confidence 5555555444332211122357777776654
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.58 E-value=1.8e-14 Score=141.57 Aligned_cols=207 Identities=18% Similarity=0.191 Sum_probs=119.5
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC---CCEEEEeCchhhHHH
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEVL 99 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---~~~~~~~~~~~~~~~ 99 (539)
.+|++++|.+.....+.+.+..... .+.++||+||||||||++|+++++.+. .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4789999999998888777665322 245899999999999999999999874 789999998874432
Q ss_pred h-----hhhhHH-------HHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc--
Q 009263 100 V-----GVGSAR-------IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-- 165 (539)
Q Consensus 100 ~-----g~~~~~-------~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld-- 165 (539)
. |..... ....|.. ...++|||||+|.+.... ...+..++..-.
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~-------------------q~~Ll~~l~~~~~~ 130 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMV-------------------QEKLLRVIEYGELE 130 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHH-------------------HHHHHHHHHHCEEC
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHHH-------------------HHHHHHHHHhCCee
Confidence 1 110000 0112322 235699999999875321 222233333210
Q ss_pred C----CCCCCcEEEEEecCCC-------CcCCccccCCCccceeeecCCCCHHHH----HHHHHHHhcc----CCCCC--
Q 009263 166 G----FDTGKGVIFLAATNRR-------DLLDPALLRPGRFDRKIRIRAPNAKGR----TEILKIHASK----VKMSD-- 224 (539)
Q Consensus 166 ~----~~~~~~vivIaatn~~-------~~ld~al~r~gRf~~~i~v~~P~~~er----~~il~~~l~~----~~~~~-- 224 (539)
. .....++.+|+|||.+ ..+++.|.+ ||.. +.+..|+..+| ..++++++.. .....
T Consensus 131 ~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~ 207 (265)
T 2bjv_A 131 RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFP 207 (265)
T ss_dssp CCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred cCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCccc
Confidence 0 0112457888999974 236778887 8853 34444555443 4455544432 22211
Q ss_pred CCC---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhH
Q 009263 225 SVD---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDM 267 (539)
Q Consensus 225 ~~~---~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~ 267 (539)
.++ +..+....-..+.++|.++++.+...+ ....|+.+|+
T Consensus 208 ~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 208 GFTERARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp CBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred CcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 233 344444432336788889988887655 3456777765
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=1.2e-15 Score=166.52 Aligned_cols=221 Identities=19% Similarity=0.169 Sum_probs=137.6
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe----CchhhHHHhh
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA----GSEFVEVLVG 101 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~----~~~~~~~~~g 101 (539)
..|+|++.+|..+.-.+..- .+........+...++||+||||||||++|+++|+.++.+++... +..+......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 45788888876663221100 000000011233448999999999999999999999876655421 1221111100
Q ss_pred h---hhH-HHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC----------
Q 009263 102 V---GSA-RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---------- 167 (539)
Q Consensus 102 ~---~~~-~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~---------- 167 (539)
. +.. .....+..| ..+|+||||||.+... ..+.|+..|+.-
T Consensus 374 ~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~~----------------------~q~~Ll~~le~~~i~i~~~g~~ 428 (595)
T 3f9v_A 374 EKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRDE----------------------DRVAIHEAMEQQTVSIAKAGIV 428 (595)
T ss_dssp GGGTSSCSEEECHHHHH---SSSEECCTTTTCCCSH----------------------HHHHHHHHHHSSSEEEESSSSE
T ss_pred ccccccccccCCeeEec---CCCcEEeehhhhCCHh----------------------HhhhhHHHHhCCEEEEecCCcE
Confidence 0 000 001122233 3469999999987532 233455555421
Q ss_pred -CCCCcEEEEEecCCCC-------------cCCccccCCCccce-eeecCCCCHHHHHHHHHHHhccCCC-------C--
Q 009263 168 -DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASKVKM-------S-- 223 (539)
Q Consensus 168 -~~~~~vivIaatn~~~-------------~ld~al~r~gRf~~-~i~v~~P~~~er~~il~~~l~~~~~-------~-- 223 (539)
..+.++.||+|||.+. .+++++++ |||. .+..+.|+.+ ...|.++.+..... .
T Consensus 429 ~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~ 505 (595)
T 3f9v_A 429 AKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDID 505 (595)
T ss_dssp EEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCT
T ss_pred EEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHH
Confidence 1235688999999886 89999999 9985 5556677777 77788777653221 0
Q ss_pred -----------------CCCCHHHHHhh--------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 009263 224 -----------------DSVDLSSYAKN--------------LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 272 (539)
Q Consensus 224 -----------------~~~~~~~la~~--------------t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~ 272 (539)
.+...+.+... ..+.|++.+.++++.|...|..+++..|+.+|+.+|+.
T Consensus 506 ~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 506 TLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp TTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 01112233332 34779999999999999999999999999999999987
Q ss_pred HHh
Q 009263 273 RLT 275 (539)
Q Consensus 273 ~~~ 275 (539)
-+.
T Consensus 586 l~~ 588 (595)
T 3f9v_A 586 IMR 588 (595)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=1.3e-14 Score=165.62 Aligned_cols=203 Identities=23% Similarity=0.285 Sum_probs=137.7
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHH--
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL-- 99 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~-- 99 (539)
+++|+|++++++.+...+......... ..++..++||+||||||||++|+++++.+ +.+|+.++|+++....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 357899999999998887754321000 01233579999999999999999999998 7899999998775431
Q ss_pred ----------hhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC-
Q 009263 100 ----------VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD- 168 (539)
Q Consensus 100 ----------~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~- 168 (539)
+|... ...+....+...++||||||||.+. ..+++.|+..++.-.
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~----------------------~~~~~~Ll~~l~~~~~ 689 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH----------------------PDVFNILLQILDDGRL 689 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC----------------------HHHHHHHHHHHTTTEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC----------------------HHHHHHHHHHhccCce
Confidence 12111 1223333444567899999999863 235667777776321
Q ss_pred --------CCCcEEEEEecCCC--------------------------CcCCccccCCCccceeeecCCCCHHHHHHHHH
Q 009263 169 --------TGKGVIFLAATNRR--------------------------DLLDPALLRPGRFDRKIRIRAPNAKGRTEILK 214 (539)
Q Consensus 169 --------~~~~vivIaatn~~--------------------------~~ld~al~r~gRf~~~i~v~~P~~~er~~il~ 214 (539)
.-.+++||+|||.. ..+.|.|+. ||+.++.+++|+.++...|++
T Consensus 690 ~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~ 767 (854)
T 1qvr_A 690 TDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVE 767 (854)
T ss_dssp CCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHH
T ss_pred ECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHH
Confidence 11367899999962 245677777 999999999999999999999
Q ss_pred HHhccC-------CCCCCCC---HHHHHhhCC--CCCHHHHHHHHHHHHHHHHH
Q 009263 215 IHASKV-------KMSDSVD---LSSYAKNLP--GWTGARLAQLVQEAALVAVR 256 (539)
Q Consensus 215 ~~l~~~-------~~~~~~~---~~~la~~t~--g~s~~dl~~lv~~A~~~A~~ 256 (539)
.++... .....++ +..++.... .++.++|+++++.+...+..
T Consensus 768 ~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~ 821 (854)
T 1qvr_A 768 IQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 821 (854)
T ss_dssp HHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 887632 1111122 455665443 45788888888888766643
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=2.3e-13 Score=142.02 Aligned_cols=239 Identities=16% Similarity=0.158 Sum_probs=152.2
Q ss_pred cccchhceecCCCCcCcCcccCcHHHHHHHHHHH-HHhcChhhhhhcCCCCCceEEE--ECCCCCcHHHHHHHHHHhc--
Q 009263 9 SFYYFAMFSQGSTGVKFSDVAGIDEAVEELQELV-RYLKNPELFDKMGIKPPHGVLL--EGPPGCGKTLVAKAIAGEA-- 83 (539)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v-~~l~~~~~~~~~g~~~~~giLL--~GppGtGKT~la~alA~~~-- 83 (539)
-|.....+.... ..++++|.+...+.|.+.+ ....... ...+..++| +||||+|||++++++++.+
T Consensus 8 i~~~~~~~~~~~---~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 8 LFKDRRVFDENY---IPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CBSCGGGGSTTC---CCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hhccHhhcCCcc---CCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 444444444333 3488999999999888877 5432110 023557899 9999999999999999876
Q ss_pred -------CCCEEEEeCchh------hHHHh----------hhhhHH-HHHHHHHH-HhCCCeEEEEeCcchhhhhhcCCc
Q 009263 84 -------GVPFYQMAGSEF------VEVLV----------GVGSAR-IRDLFKRA-KVNKPSVIFIDEIDALATRRQGIF 138 (539)
Q Consensus 84 -------~~~~~~~~~~~~------~~~~~----------g~~~~~-~~~~f~~a-~~~~p~Il~iDEiD~l~~~~~~~~ 138 (539)
+.+++++++... ..... +..... ...+.... ....|.||+|||+|.+......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-- 156 (412)
T 1w5s_A 79 AAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-- 156 (412)
T ss_dssp HHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS--
T ss_pred HHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc--
Confidence 456788886432 11110 111111 12222222 1245889999999998642100
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhcCCC-CC--CcEEEEEecCCCC---cCC---ccccCCCccceeeecCCCCHHHH
Q 009263 139 KDTTDHLYNAATQERETTLNQLLIELDGFD-TG--KGVIFLAATNRRD---LLD---PALLRPGRFDRKIRIRAPNAKGR 209 (539)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-~~--~~vivIaatn~~~---~ld---~al~r~gRf~~~i~v~~P~~~er 209 (539)
. ...+..++..+.... .. .++.+|++|+.++ .++ +.+.+ ++...+.+++++.++.
T Consensus 157 -----------~---~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~ 220 (412)
T 1w5s_A 157 -----------A---AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSREL 220 (412)
T ss_dssp -----------C---HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHH
T ss_pred -----------c---hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHH
Confidence 0 123333443333222 12 6788888887655 234 55556 5555699999999999
Q ss_pred HHHHHHHhccCCCC---CCCCHHHHHhhCC------CCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 009263 210 TEILKIHASKVKMS---DSVDLSSYAKNLP------GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 275 (539)
Q Consensus 210 ~~il~~~l~~~~~~---~~~~~~~la~~t~------g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~ 275 (539)
.+++...+...... .+..+..++..+. | +++.+..++..|...|..++...++.+++..++....
T Consensus 221 ~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 221 YTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 99998776532111 1122566777777 6 7889999999998888888888899999998887643
No 79
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.52 E-value=3.1e-14 Score=142.97 Aligned_cols=202 Identities=20% Similarity=0.295 Sum_probs=126.8
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhh
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV 102 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~ 102 (539)
++++|.+...+.+.+.+.... ..+.++||+||||||||++|+++++.. +.||+.++|+.+.......
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999888887776543 234589999999999999999999965 6899999998765432211
Q ss_pred -----h-------hHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC--
Q 009263 103 -----G-------SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-- 168 (539)
Q Consensus 103 -----~-------~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-- 168 (539)
. .......|..+. .++|||||||.+... ....|+..++...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~----------------------~q~~Ll~~l~~~~~~ 126 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL----------------------MQVRLLRAIQEREVQ 126 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH----------------------HHHHHHHHHHSSBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH----------------------HHHHHHHHHhcCEee
Confidence 0 001123444443 469999999997532 2234444444321
Q ss_pred -------CCCcEEEEEecCCC-------CcCCccccCCCccceeeecCCCCHH----HHHHHHHHHhccC----CCC-CC
Q 009263 169 -------TGKGVIFLAATNRR-------DLLDPALLRPGRFDRKIRIRAPNAK----GRTEILKIHASKV----KMS-DS 225 (539)
Q Consensus 169 -------~~~~vivIaatn~~-------~~ld~al~r~gRf~~~i~v~~P~~~----er~~il~~~l~~~----~~~-~~ 225 (539)
.+.++.||++||.+ ..+++.|.. ||. .+.+..|+.. +...++.+++... ... ..
T Consensus 127 ~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~ 203 (304)
T 1ojl_A 127 RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKG 203 (304)
T ss_dssp BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCC
T ss_pred ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccC
Confidence 13458899999975 135566666 664 4444445544 4445666655432 111 12
Q ss_pred CC---HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHH
Q 009263 226 VD---LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 269 (539)
Q Consensus 226 ~~---~~~la~~t-~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~ 269 (539)
++ +..+.... +| +.++|.+++..+...+ ....|+.+|+..
T Consensus 204 ~s~~a~~~L~~~~wpG-nvReL~~~l~~~~~~~---~~~~i~~~~l~~ 247 (304)
T 1ojl_A 204 FTPQAMDLLIHYDWPG-NIRELENAIERAVVLL---TGEYISERELPL 247 (304)
T ss_dssp BCHHHHHHHHHCCCSS-HHHHHHHHHHHHHHHC---CSSSBCGGGSCG
T ss_pred CCHHHHHHHHcCCCCC-CHHHHHHHHHHHHHhC---CCCcccHHhhhh
Confidence 23 45555555 44 7788888888877654 345688777653
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.47 E-value=3.1e-13 Score=148.34 Aligned_cols=219 Identities=23% Similarity=0.295 Sum_probs=134.7
Q ss_pred ecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC---EEEEeCc
Q 009263 17 SQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGS 93 (539)
Q Consensus 17 ~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~---~~~~~~~ 93 (539)
....++.+|++++|++.+++.+...+. .+..++|+||||||||++|+++++.+... .+.+.+.
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred cccccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 456788999999999999877766543 23489999999999999999999987432 1222111
Q ss_pred hhh--------------HHHhh------------------------------------------hhhHHHHHHHH-----
Q 009263 94 EFV--------------EVLVG------------------------------------------VGSARIRDLFK----- 112 (539)
Q Consensus 94 ~~~--------------~~~~g------------------------------------------~~~~~~~~~f~----- 112 (539)
... ..... ........+|.
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 100 00000 00000111111
Q ss_pred ------------------HHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcC--------
Q 009263 113 ------------------RAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-------- 166 (539)
Q Consensus 113 ------------------~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~-------- 166 (539)
......+.+|||||++.+... ..+.|+..|+.
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~----------------------~q~~Ll~~Le~~~~~~~g~ 235 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLK----------------------MQQSLLTAMQEKKFPITGQ 235 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHH----------------------HHHHHHHHHHHSEECCBCS
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhCCHH----------------------HHHHHHHHHHcCcEEeccc
Confidence 011234569999999987422 22334443331
Q ss_pred -----------CCCCCcEEEEEecCCC--CcCCccccCCCccc---eeeecCCC---CHHHHHHHHHHHhccCC---CCC
Q 009263 167 -----------FDTGKGVIFLAATNRR--DLLDPALLRPGRFD---RKIRIRAP---NAKGRTEILKIHASKVK---MSD 224 (539)
Q Consensus 167 -----------~~~~~~vivIaatn~~--~~ld~al~r~gRf~---~~i~v~~P---~~~er~~il~~~l~~~~---~~~ 224 (539)
...+.++.||++||+. ..++++|++ ||. ..+.++.. +.+....+++.+..... ...
T Consensus 236 ~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 313 (604)
T 3k1j_A 236 SEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIP 313 (604)
T ss_dssp CTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcc
Confidence 1112467899999976 679999999 886 45555432 23345555544433211 112
Q ss_pred CCC---HHHHHh---hCCCC------CHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 009263 225 SVD---LSSYAK---NLPGW------TGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 273 (539)
Q Consensus 225 ~~~---~~~la~---~t~g~------s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~ 273 (539)
.++ +..+.. +..|- +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 314 ~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 314 HFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 222 334433 23553 79999999999999998899999999999999864
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.41 E-value=2.3e-13 Score=121.15 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=65.1
Q ss_pred cccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhh
Q 009263 27 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG 103 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~ 103 (539)
+++|.+...+++.+.+.... ..+.++||+||||||||++|+++++.. +.||+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 68899999888887766542 234579999999999999999999987 78999 999876553
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCcchhhh
Q 009263 104 SARIRDLFKRAKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 104 ~~~~~~~f~~a~~~~p~Il~iDEiD~l~~ 132 (539)
......|..+. .++|||||||.+..
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~ 90 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTR 90 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCH
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCH
Confidence 23345565553 45999999999754
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.40 E-value=1.8e-13 Score=121.66 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=65.4
Q ss_pred cccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHH
Q 009263 27 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSAR 106 (539)
Q Consensus 27 dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~ 106 (539)
+++|.++..+++.+.+.... ..+.++||+||||||||++|+++++... +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899999888888776432 2345799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhCCCeEEEEeCcchhhh
Q 009263 107 IRDLFKRAKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 107 ~~~~f~~a~~~~p~Il~iDEiD~l~~ 132 (539)
....|..+. .++|||||+|.+..
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~ 89 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR 89 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH
Confidence 345565543 46999999999754
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.39 E-value=5.6e-12 Score=128.22 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=112.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhHHHhhhhhHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 112 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~f~ 112 (539)
+.+..+||+||||+|||++|+++|+.+..+ ++.++..+- -...+...++.+++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHH
Confidence 456789999999999999999999987532 333332200 00123345677776
Q ss_pred HHHh----CCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 009263 113 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 188 (539)
Q Consensus 113 ~a~~----~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~a 188 (539)
.+.. ..+.|++|||+|.+.. ...|.|+..++. ++.++++|.+||.++.+.++
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~----------------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTD----------------------AAANALLKTLEE--PPAETWFFLATREPERLLAT 154 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCH----------------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHH
T ss_pred HHhhccccCCcEEEEECchhhcCH----------------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHH
Confidence 6543 2457999999999742 235677888763 45678888888999999999
Q ss_pred ccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 009263 189 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 251 (539)
Q Consensus 189 l~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~ 251 (539)
+++ |+ ..+.|++|+.++..+++.... .+ .+..+..++..+.| +++.+.++++.+.
T Consensus 155 i~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 155 LRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp HHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSHH
T ss_pred Hhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccch
Confidence 998 75 479999999999999988775 11 12235667777766 6777766665543
No 84
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.32 E-value=5.5e-12 Score=99.68 Aligned_cols=75 Identities=29% Similarity=0.526 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 202 ~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
|+|+.++|.+||+.++++..+..++|+..++..|.||||+||.++|++|...|++++...|+.+||..|++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998889999999999999999999999999999999999999999999999998864
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.2e-11 Score=123.95 Aligned_cols=142 Identities=14% Similarity=0.218 Sum_probs=103.2
Q ss_pred CcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc------CCCEEEEeCchhhHHHhhhh
Q 009263 30 GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------GVPFYQMAGSEFVEVLVGVG 103 (539)
Q Consensus 30 G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~~~~~~~~~~~~g~~ 103 (539)
|++++.+.|...+..- + +..+||+||||+|||++|+++|+.+ ...++.++++. ...+
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 5666777776655421 1 3478999999999999999999864 34677776542 0123
Q ss_pred hHHHHHHHHHHHhC----CCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 009263 104 SARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 179 (539)
Q Consensus 104 ~~~~~~~f~~a~~~----~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaat 179 (539)
...++++++.+... ...|++|||+|.+.. ...|.|+..++. ++.++++|.+|
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~----------------------~a~naLLk~LEe--p~~~t~fIl~t 119 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ----------------------QAANAFLKALEE--PPEYAVIVLNT 119 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH----------------------HHHHHTHHHHHS--CCTTEEEEEEE
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH----------------------HHHHHHHHHHhC--CCCCeEEEEEE
Confidence 44577777777533 236999999999743 235678887773 45677777788
Q ss_pred CCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHh
Q 009263 180 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 217 (539)
Q Consensus 180 n~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l 217 (539)
|.++.+.+++++ | .++|++|+.++..+.+...+
T Consensus 120 ~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 120 RRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred CChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 889999999999 7 88999999999999988776
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.30 E-value=7e-12 Score=100.74 Aligned_cols=78 Identities=28% Similarity=0.493 Sum_probs=73.3
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 200 RIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 200 ~v~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
.-.+||.++|.+||+.++++.++..++|+..||..|.||||+||.++|++|+..|+++....|+.+||..|++++..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 346899999999999999999988899999999999999999999999999999999999999999999999998653
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.27 E-value=4.3e-12 Score=150.42 Aligned_cols=155 Identities=19% Similarity=0.216 Sum_probs=106.3
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHH-hcC----------hhhhhh------cCCC----------CCce--EEEECCCCC
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRY-LKN----------PELFDK------MGIK----------PPHG--VLLEGPPGC 70 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~-l~~----------~~~~~~------~g~~----------~~~g--iLL~GppGt 70 (539)
.+.++|+||.|.+++|+.+.+.+.+ ++. ++.++. .|+. +|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 4568999999999999999888776 422 445554 3333 4555 999999999
Q ss_pred cHHHHHHHHHHhc---CCCEEEEeCchhh------------HHHhhh----hhHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 71 GKTLVAKAIAGEA---GVPFYQMAGSEFV------------EVLVGV----GSARIRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 71 GKT~la~alA~~~---~~~~~~~~~~~~~------------~~~~g~----~~~~~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
|||+||++++.+. +-|.++++..+.. +.|.+. +++.++.+|..|+...||++|+|++|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5677777766544 344555 78889999999999999999999999999
Q ss_pred hhhcC--CcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 009263 132 TRRQG--IFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 182 (539)
Q Consensus 132 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~ 182 (539)
+.+.. ..++. ...-..+.++++|.++++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~-------~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDS-------HMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCC-------CTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccc-------cccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 88531 01110 1122345789999999987777888888 66643
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.26 E-value=1.7e-11 Score=99.12 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcCCCcCCc
Q 009263 205 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGI 283 (539)
Q Consensus 205 ~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g~~~~~~ 283 (539)
|.++|.+||+.++++.++..++|+..||..|.||||+||.++|++|...|.+++...|+.+||..|+.++..|..+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999988766543
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=6.5e-11 Score=109.00 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=66.0
Q ss_pred CCCCcCcCcccCcH-HHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009263 19 GSTGVKFSDVAGID-EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 93 (539)
Q Consensus 19 ~~~~~~~~dv~G~~-~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~ 93 (539)
...+.+|+++++.+ ..++.+..+..++.+. ....+.+++|+||||||||+|++++++.+ +..+++++..
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45678999998743 3333333333333322 22346789999999999999999999877 6677888887
Q ss_pred hhhHHHhhhhhHH-HHHHHHHHHhCCCeEEEEeCcchh
Q 009263 94 EFVEVLVGVGSAR-IRDLFKRAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 94 ~~~~~~~g~~~~~-~~~~f~~a~~~~p~Il~iDEiD~l 130 (539)
++...+....... ....+.. ...|.+|+|||++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 77 DLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 7765543221110 0122222 235779999999854
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.10 E-value=2.2e-10 Score=141.59 Aligned_cols=139 Identities=22% Similarity=0.291 Sum_probs=94.4
Q ss_pred CCceEEEECCCCCcHHHHHHHH-HHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHH---------------hCCCeE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAI-AGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAK---------------VNKPSV 121 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~al-A~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~---------------~~~p~I 121 (539)
.++++||+||||||||++|+.+ ++..+.+++.++++...+ ...+...+.... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 3468999999999999999555 444477788888765433 223344444321 123479
Q ss_pred EEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCC-C-------CcEEEEEecCCCC-----cCCcc
Q 009263 122 IFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-G-------KGVIFLAATNRRD-----LLDPA 188 (539)
Q Consensus 122 l~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~-------~~vivIaatn~~~-----~ld~a 188 (539)
|||||+|.....+- ..+.....+.+++.. .++-. . .++.+|+|+|+|. .++++
T Consensus 1340 lFiDEinmp~~d~y-------------g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY-------------GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp EEEETTTCSCCCSS-------------SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred EEeccccccccccc-------------CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh
Confidence 99999986433221 112234455565532 22211 1 3589999999994 79999
Q ss_pred ccCCCccceeeecCCCCHHHHHHHHHHHhcc
Q 009263 189 LLRPGRFDRKIRIRAPNAKGRTEILKIHASK 219 (539)
Q Consensus 189 l~r~gRf~~~i~v~~P~~~er~~il~~~l~~ 219 (539)
++| || .++.++.|+.+++..|+..++..
T Consensus 1406 llR--rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1406 FTR--HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp HHT--TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred hhh--ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 999 88 78999999999999999988754
No 91
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.04 E-value=3.9e-10 Score=90.11 Aligned_cols=73 Identities=25% Similarity=0.419 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcC
Q 009263 205 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 277 (539)
Q Consensus 205 ~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g 277 (539)
|.++|.+||+.++++.++..++|+..++..|.||||+||.++|++|...|++++...|+.+||..|+.++.++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6789999999999999988899999999999999999999999999999999998999999999999998654
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.02 E-value=7.5e-10 Score=114.71 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=120.8
Q ss_pred cCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHh-
Q 009263 25 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV- 100 (539)
Q Consensus 25 ~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~- 100 (539)
+..++|.+...+++.+.+..+.. ....++|+|++|||||++|+++.... +.||+.++|+.+.....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45788888777777666655332 23468999999999999999998876 47999999988654321
Q ss_pred ----hhhh-------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc--CC
Q 009263 101 ----GVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GF 167 (539)
Q Consensus 101 ----g~~~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld--~~ 167 (539)
|... ......|..|. ..+||||||+.+.... +..+..+++.-. ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~~~-------------------q~~Ll~~l~~~~~~~~ 263 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSLEA-------------------QAKLLRVIESGKFYRL 263 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCHHH-------------------HHHHHHHHHHSEECCB
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCHHH-------------------HHHHHHHHhcCcEEeC
Confidence 1100 01123455543 3599999999975432 233333443311 11
Q ss_pred CC----CCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHHH----HHHHHHhcc----CCCC-CCCC
Q 009263 168 DT----GKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRT----EILKIHASK----VKMS-DSVD 227 (539)
Q Consensus 168 ~~----~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er~----~il~~~l~~----~~~~-~~~~ 227 (539)
.. ..++.+|+|||..- .+.+.|.. |+. .+.+..|...+|. .++.+++.. .... ..++
T Consensus 264 g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~ 340 (387)
T 1ny5_A 264 GGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFT 340 (387)
T ss_dssp TCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEEC
T ss_pred CCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 11 23578999999532 12222222 222 3445567666653 344555432 2211 1233
Q ss_pred ---HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHH
Q 009263 228 ---LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 270 (539)
Q Consensus 228 ---~~~la~~t-~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a 270 (539)
+..+.... +| +.++|++++++|...+ ....|+.+|+...
T Consensus 341 ~~a~~~l~~~~wpG-NvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 341 KSAQELLLSYPWYG-NVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp HHHHHHHHHSCCTT-HHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred HHHHHHHHhCCCCc-HHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 33444333 34 6778888888887655 3457888887644
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.02 E-value=1.1e-08 Score=103.88 Aligned_cols=190 Identities=17% Similarity=0.188 Sum_probs=117.0
Q ss_pred CCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh--
Q 009263 19 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV-- 96 (539)
Q Consensus 19 ~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~-- 96 (539)
..++.....++|.++..+.|.+ +. . ..++|+||+|+|||+|++.++++++.+++++++....
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 69 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER 69 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTC
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccc
Confidence 3455567889999988777765 32 1 3799999999999999999999988778888876430
Q ss_pred -----HHHhhh---------------------------------------hhHHHHHHHHHHHhC--CCeEEEEeCcchh
Q 009263 97 -----EVLVGV---------------------------------------GSARIRDLFKRAKVN--KPSVIFIDEIDAL 130 (539)
Q Consensus 97 -----~~~~g~---------------------------------------~~~~~~~~f~~a~~~--~p~Il~iDEiD~l 130 (539)
..+... ....+..++...... .|.+|+|||++.+
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~ 149 (357)
T 2fna_A 70 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL 149 (357)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHh
Confidence 000000 011233444443332 4889999999998
Q ss_pred hhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc---------CCccccCCCccceeeec
Q 009263 131 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---------LDPALLRPGRFDRKIRI 201 (539)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~---------ld~al~r~gRf~~~i~v 201 (539)
...... .....+..+.... .++.+|.++..... ....+. +|+...+.+
T Consensus 150 ~~~~~~---------------~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l 206 (357)
T 2fna_A 150 VKLRGV---------------NLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVEL 206 (357)
T ss_dssp GGCTTC---------------CCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEE
T ss_pred hccCch---------------hHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeec
Confidence 642110 0112233333221 24555555553221 111222 366678999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHH
Q 009263 202 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQE 249 (539)
Q Consensus 202 ~~P~~~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~ 249 (539)
++.+.++..+++...+.......+ +...+...+.| .|.-+..++..
T Consensus 207 ~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 207 KPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCC-CHHHHHHHHHH
Confidence 999999999999887654333322 24778888878 57777776554
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.95 E-value=2.3e-09 Score=100.30 Aligned_cols=104 Identities=26% Similarity=0.268 Sum_probs=64.5
Q ss_pred CCcCcCcccCcHHHHH-HHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009263 21 TGVKFSDVAGIDEAVE-ELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 96 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~-~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~ 96 (539)
.+.+|+++++.+.... .+..+..++..... ...+.+++|+||||||||++|+++++.+ +.+++++++.++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 4678999998663322 33333333322110 0134789999999999999999999987 6788889888776
Q ss_pred HHHhhhhh-HHHHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 97 EVLVGVGS-ARIRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 97 ~~~~g~~~-~~~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
..+..... ..+...+.... .+++|+|||++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 55432110 01122333332 23599999997643
No 95
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.94 E-value=3.8e-10 Score=89.86 Aligned_cols=72 Identities=33% Similarity=0.365 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcCC
Q 009263 207 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGP 278 (539)
Q Consensus 207 ~er~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~g~ 278 (539)
++|.+||+.++++.++..++|+..++..|.||||+||.++|++|+..|++++...|+.+||..|+.++..+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 468999999999988888999999999999999999999999999999999999999999999999986554
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.94 E-value=5.3e-09 Score=108.61 Aligned_cols=213 Identities=18% Similarity=0.115 Sum_probs=119.8
Q ss_pred ccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHH-HHhcCCCEEEEeCchh-hHHHhhh---
Q 009263 28 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAI-AGEAGVPFYQMAGSEF-VEVLVGV--- 102 (539)
Q Consensus 28 v~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~al-A~~~~~~~~~~~~~~~-~~~~~g~--- 102 (539)
|.|++.+|..|.-.+. ..... .+..-++||.|+||| ||++|+++ ++.+... .+.++..- .....+.
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~-~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRG-VYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSE-EEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCe-EEecCCCCCccCceEEEEc
Confidence 7788777665543221 11000 122337999999999 99999999 7765433 33322110 0000100
Q ss_pred --hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc-------CCCCCCcE
Q 009263 103 --GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-------GFDTGKGV 173 (539)
Q Consensus 103 --~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld-------~~~~~~~v 173 (539)
+...-...+..|. ..|+|||||+.+..+ +...|++.|+ +..-+.++
T Consensus 286 ~tG~~~~~G~l~LAd---gGvl~lDEIn~~~~~----------------------~qsaLlEaMEe~~VtI~G~~lparf 340 (506)
T 3f8t_A 286 DRGWALRAGAAVLAD---GGILAVDHLEGAPEP----------------------HRWALMEAMDKGTVTVDGIALNARC 340 (506)
T ss_dssp SSSEEEEECHHHHTT---TSEEEEECCTTCCHH----------------------HHHHHHHHHHHSEEEETTEEEECCC
T ss_pred CCCcccCCCeeEEcC---CCeeehHhhhhCCHH----------------------HHHHHHHHHhCCcEEECCEEcCCCe
Confidence 0000012233332 249999999987543 2234444443 21224568
Q ss_pred EEEEecCCCC-----------cCCccccCCCccceee-ecCCCCHHHH---------HHHHHH---HhccCCCCCCCC--
Q 009263 174 IFLAATNRRD-----------LLDPALLRPGRFDRKI-RIRAPNAKGR---------TEILKI---HASKVKMSDSVD-- 227 (539)
Q Consensus 174 ivIaatn~~~-----------~ld~al~r~gRf~~~i-~v~~P~~~er---------~~il~~---~l~~~~~~~~~~-- 227 (539)
.||||+|..+ .|++++++ |||..+ .++.|+.+.- .+.++. +.+...+...++
T Consensus 341 ~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e 418 (506)
T 3f8t_A 341 AVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE 418 (506)
T ss_dssp EEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH
T ss_pred EEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH
Confidence 9999999865 68889999 998744 4455554321 112222 122011111111
Q ss_pred ----HHHH------H--h------hCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 009263 228 ----LSSY------A--K------NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 276 (539)
Q Consensus 228 ----~~~l------a--~------~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~~~ 276 (539)
+..+ . . ...|.|++.+..+++-|...|..++++.++.+|+.+|+.-+..
T Consensus 419 a~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 419 ARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 1000 0 0 2457899999999999999999999999999999999876643
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.91 E-value=1.3e-07 Score=95.66 Aligned_cols=193 Identities=16% Similarity=0.158 Sum_probs=114.4
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh---
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV--- 96 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~--- 96 (539)
.++..-+.++|.+...+.|.+.+.. +..++|+||+|+|||+|++.+++..+ ++++++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 3555667899999998888876542 14799999999999999999999885 6777664431
Q ss_pred ---------HHHh--------------------hhh----hHHHHHHHHH----HHhCCCeEEEEeCcchhhhhhcCCcC
Q 009263 97 ---------EVLV--------------------GVG----SARIRDLFKR----AKVNKPSVIFIDEIDALATRRQGIFK 139 (539)
Q Consensus 97 ---------~~~~--------------------g~~----~~~~~~~f~~----a~~~~p~Il~iDEiD~l~~~~~~~~~ 139 (539)
..+. +.. ...+..++.. +....|.+|+|||++.+......
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~--- 146 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR--- 146 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT---
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc---
Confidence 1000 000 0112222222 22224889999999997641000
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC---------cCCccccCCCccceeeecCCCCHHHHH
Q 009263 140 DTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD---------LLDPALLRPGRFDRKIRIRAPNAKGRT 210 (539)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~---------~ld~al~r~gRf~~~i~v~~P~~~er~ 210 (539)
........+..++... .++.+|.++.... .....+. ||+...+.+++.+.++..
T Consensus 147 ---------~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~ 209 (350)
T 2qen_A 147 ---------GGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSV 209 (350)
T ss_dssp ---------TTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHH
T ss_pred ---------chhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHH
Confidence 0111122333333221 3455555544321 1112232 366678999999999999
Q ss_pred HHHHHHhccCCCC-CCCCHHHHHhhCCCCCHHHHHHHHHH
Q 009263 211 EILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQE 249 (539)
Q Consensus 211 ~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~lv~~ 249 (539)
+++...+...... .+..+..+...+.| .|.-+..++..
T Consensus 210 ~~l~~~~~~~~~~~~~~~~~~i~~~tgG-~P~~l~~~~~~ 248 (350)
T 2qen_A 210 EFLKRGFREVNLDVPENEIEEAVELLDG-IPGWLVVFGVE 248 (350)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 9998876544322 12235667777877 57667666543
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.88 E-value=3.5e-09 Score=94.47 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
.+..++|+||+|+|||+|++++++.+ +..++++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 45679999999999999999999987 777888888776543 112357899999998754
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.83 E-value=9.2e-10 Score=109.43 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=67.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC--chhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhh
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG--SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATR 133 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~ 133 (539)
+.++..++|+||||||||+||.++|.+.+.++++++. .+..+.+.......+..+++...... +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 4445568999999999999999999876555433333 22222222223334444555554443 9999999998644
Q ss_pred hcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccc
Q 009263 134 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPAL 189 (539)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al 189 (539)
..... ......+.+.+++..|.++....++.+|+++| +...++++
T Consensus 198 ~~~~s----------~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNT----------TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc----------ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 32100 00001123445555554443445677888888 55555554
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.76 E-value=1.5e-08 Score=101.63 Aligned_cols=102 Identities=21% Similarity=0.314 Sum_probs=61.2
Q ss_pred CcCcCcccCcHHH-HHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCchhh
Q 009263 22 GVKFSDVAGIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFV 96 (539)
Q Consensus 22 ~~~~~dv~G~~~~-k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~~~ 96 (539)
+.+|+++.+.+.. ...+..+..++... ....+.+++|+||||||||+||+++|+++ +.++++++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4689999875422 22222222333221 11135789999999999999999999865 4788889888876
Q ss_pred HHHhhhhh-HHHHHHHHHHHhCCCeEEEEeCcchhh
Q 009263 97 EVLVGVGS-ARIRDLFKRAKVNKPSVIFIDEIDALA 131 (539)
Q Consensus 97 ~~~~g~~~-~~~~~~f~~a~~~~p~Il~iDEiD~l~ 131 (539)
..+..... ......+.... .+.+|+|||++...
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 65433211 11112222222 34599999997643
No 101
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.72 E-value=9e-09 Score=96.27 Aligned_cols=130 Identities=19% Similarity=0.191 Sum_probs=81.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh--------cC-CCEEEEeCchhhHHHh----------hh-----hhHHHHHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE--------AG-VPFYQMAGSEFVEVLV----------GV-----GSARIRDLFKRA 114 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~--------~~-~~~~~~~~~~~~~~~~----------g~-----~~~~~~~~f~~a 114 (539)
+...|++|+||||||++|.+++.. .| .+++..++.++..... .. ....+...+..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 346899999999999999887543 34 7777777665532111 00 111222222112
Q ss_pred HhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCc
Q 009263 115 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGR 194 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gR 194 (539)
....+||+|||++.+.+.+...... ..++..+.. ....++-+|.+|+.++.++.++++ |
T Consensus 85 -~~~~~vliIDEAq~l~~~~~~~~e~-----------------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--r 143 (199)
T 2r2a_A 85 -ENIGSIVIVDEAQDVWPARSAGSKI-----------------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--L 143 (199)
T ss_dssp -GGTTCEEEETTGGGTSBCCCTTCCC-----------------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--T
T ss_pred -ccCceEEEEEChhhhccCccccchh-----------------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--H
Confidence 2346799999999986543211100 124444442 334566778888889999999988 9
Q ss_pred cceeeecCCCCHHHH
Q 009263 195 FDRKIRIRAPNAKGR 209 (539)
Q Consensus 195 f~~~i~v~~P~~~er 209 (539)
++..++++.|....+
T Consensus 144 i~~~~~l~~~~~~~~ 158 (199)
T 2r2a_A 144 VRKHYHIASNKMGMR 158 (199)
T ss_dssp EEEEEEEEECSSCCE
T ss_pred hheEEEEcCcccCcc
Confidence 999999988755443
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.72 E-value=8.6e-08 Score=98.43 Aligned_cols=193 Identities=21% Similarity=0.306 Sum_probs=108.3
Q ss_pred CcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCC--EEEEeCchhhHHH----
Q 009263 26 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSEFVEVL---- 99 (539)
Q Consensus 26 ~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~~~~~~~~~~~---- 99 (539)
.+++|.+....++.+.+..+... ...++++|++||||+.+|+++....+.. |+.++|..+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 56788888877777666554322 2369999999999999999998877543 9999998764431
Q ss_pred -hhhhh-------HHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhc--CCCC
Q 009263 100 -VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFDT 169 (539)
Q Consensus 100 -~g~~~-------~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld--~~~~ 169 (539)
.|... ......|+.|. ..+||||||+.+.... +..+..+++.-. ....
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~~~-------------------Q~~Ll~~l~~~~~~~~g~ 256 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQRV-------------------QAKLLRVLETGSFTRLGG 256 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCHHH-------------------HHHHHHHHHHSEECCBTC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCCHHH-------------------HHHHHHHHHhCCcccCCC
Confidence 11100 01123455543 3489999999975432 223333333211 1111
Q ss_pred ----CCcEEEEEecCCCC-------cCCccccCCCccceeeecCCCCHHHH----HHHHHHHhccC----CCC-CCCC--
Q 009263 170 ----GKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGR----TEILKIHASKV----KMS-DSVD-- 227 (539)
Q Consensus 170 ----~~~vivIaatn~~~-------~ld~al~r~gRf~~~i~v~~P~~~er----~~il~~~l~~~----~~~-~~~~-- 227 (539)
..++.+|++||..- .+.+.|.. |+. .+.+..|...+| ..++.+++.+. ... ..++
T Consensus 257 ~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 333 (368)
T 3dzd_A 257 NQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLS-VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE 333 (368)
T ss_dssp CCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhC-CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 12577888998421 12223333 332 334445555444 44556655432 111 2233
Q ss_pred -HHHHHhhC-CCCCHHHHHHHHHHHHHHH
Q 009263 228 -LSSYAKNL-PGWTGARLAQLVQEAALVA 254 (539)
Q Consensus 228 -~~~la~~t-~g~s~~dl~~lv~~A~~~A 254 (539)
+..|.... +| +.++|++++..|...+
T Consensus 334 a~~~L~~~~wpG-NvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 334 TKEYLMKQEWKG-NVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHTCCCTT-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCc-HHHHHHHHHHHHHHhC
Confidence 34444443 44 5677777777776543
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.61 E-value=4.2e-07 Score=112.70 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=91.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 138 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~ 138 (539)
..|+++.||+|||||.+++++|+.+|.+++.++|++-.. ...+..+|..+.... +.+++|||+.+.....
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evL--- 714 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVL--- 714 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHH---
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHH---
Confidence 357899999999999999999999999999999986443 244566676665444 5999999998654321
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhc---------C--CCCCCcEEEEEecCC----CCcCCccccCCCccceeeecCC
Q 009263 139 KDTTDHLYNAATQERETTLNQLLIELD---------G--FDTGKGVIFLAATNR----RDLLDPALLRPGRFDRKIRIRA 203 (539)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~ll~~ld---------~--~~~~~~vivIaatn~----~~~ld~al~r~gRf~~~i~v~~ 203 (539)
+...+.+..+...+. + +.-+.++.|++|.|. ...|++++.+ || +.+.+..
T Consensus 715 ------------s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~ 779 (2695)
T 4akg_A 715 ------------SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKS 779 (2695)
T ss_dssp ------------HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCC
T ss_pred ------------HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeC
Confidence 111122222222221 1 122355677888883 4468999988 77 6789999
Q ss_pred CCHHHHHHHHH
Q 009263 204 PNAKGRTEILK 214 (539)
Q Consensus 204 P~~~er~~il~ 214 (539)
||.+...+|+-
T Consensus 780 Pd~~~i~ei~l 790 (2695)
T 4akg_A 780 PQSGTIAEMIL 790 (2695)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99998888753
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.52 E-value=8.5e-08 Score=98.37 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=76.9
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhh-
Q 009263 54 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALAT- 132 (539)
Q Consensus 54 ~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~- 132 (539)
+++.++..++|+||||+|||+|++++++..+..++.+....-... |.........++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~------------~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN------------FELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHH------------HHHGGGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHH------------HHHHHhcchhHHHHHHHHHHHHH
Confidence 467788889999999999999999999988776655433221000 0111122345789999998764
Q ss_pred hhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCC
Q 009263 133 RRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 203 (539)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~ 203 (539)
.+... .+ . . ......+...+++ .+.|+.+||+++.+ +++.+|+|++..+....
T Consensus 232 ~r~l~-~~---------~-~-~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP-SG---------Q-G-INNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC-CC---------S-H-HHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc-cc---------C-c-chHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 11100 00 0 0 0012233344543 34667789999999 79999999998877754
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.42 E-value=3.7e-07 Score=109.83 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=78.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhH----HHhh------------hhhHHHHHHHHHHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE----VLVG------------VGSARIRDLFKRAK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~----~~~g------------~~~~~~~~~f~~a~ 115 (539)
|+.++.+++|+||||||||+||.+++.++ +..+.+++..+... ...| ..+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47788999999999999999999998765 55677777654321 1122 12345566666778
Q ss_pred hCCCeEEEEeCcchhhhhhc--CCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 009263 116 VNKPSVIFIDEIDALATRRQ--GIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 179 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaat 179 (539)
...|++|+||+++.+.+... +..++. ......+.+.++|..|.++....+++||++-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~-------~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDS-------HMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCC-------CTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhccccccccccccc-------ccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 88999999999998776431 111110 1111234567777777766666777777543
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.36 E-value=4.5e-07 Score=84.13 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=26.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCCEE
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 88 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~ 88 (539)
+..+++||+||||||||++|.++|+.+...++
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 33468999999999999999999999865443
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.26 E-value=1.9e-06 Score=107.58 Aligned_cols=138 Identities=22% Similarity=0.248 Sum_probs=88.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc-CCCEEEEeCchhhHHHhhhhhHHHHHHHHHH----Hh------------CCCeE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAGSEFVEVLVGVGSARIRDLFKRA----KV------------NKPSV 121 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a----~~------------~~p~I 121 (539)
.+++||+||||||||+++......+ +.+++.++++.-.+ ...+...+... .. ....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4579999999999998876655444 66677787765432 22333333321 00 12259
Q ss_pred EEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCC-------CCCCcEEEEEecCCCC-----cCCccc
Q 009263 122 IFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------DTGKGVIFLAATNRRD-----LLDPAL 189 (539)
Q Consensus 122 l~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-------~~~~~vivIaatn~~~-----~ld~al 189 (539)
+||||++.-....- +.+.....+.+++..-.-+ ..-.++.+|+|+|.|. .+++++
T Consensus 1378 lFiDDiNmp~~D~y-------------GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKY-------------GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp EEETTTTCCCCCTT-------------SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEecccCCCCcccc-------------ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 99999986322111 1222345556665532111 1124688999999884 589999
Q ss_pred cCCCccceeeecCCCCHHHHHHHHHHHhc
Q 009263 190 LRPGRFDRKIRIRAPNAKGRTEILKIHAS 218 (539)
Q Consensus 190 ~r~gRf~~~i~v~~P~~~er~~il~~~l~ 218 (539)
+| ||. ++.++.|+.+....|+..++.
T Consensus 1445 ~r--~F~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1445 LR--HAP-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp HT--TCC-EEECCCCCHHHHHHHHHHHHH
T ss_pred Hh--hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 98 886 589999999999999876654
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.25 E-value=2.1e-06 Score=90.75 Aligned_cols=128 Identities=23% Similarity=0.255 Sum_probs=96.9
Q ss_pred CeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEe---------cC---CCCcCC
Q 009263 119 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA---------TN---RRDLLD 186 (539)
Q Consensus 119 p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaa---------tn---~~~~ld 186 (539)
|.|+||||+|.+. ...++.|+..++.. +.+++|+++ ++ .+..++
T Consensus 296 ~~VliIDEa~~l~----------------------~~a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~ 351 (456)
T 2c9o_A 296 PGVLFVDEVHMLD----------------------IECFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIP 351 (456)
T ss_dssp ECEEEEESGGGCB----------------------HHHHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCC
T ss_pred ceEEEEechhhcC----------------------HHHHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCC
Confidence 3599999999974 23567888888743 334555555 33 266789
Q ss_pred ccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCCCCch
Q 009263 187 PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILS 264 (539)
Q Consensus 187 ~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~-~~~~~la~~t-~g~s~~dl~~lv~~A~~~A~~~~~~~I~~ 264 (539)
+.+++ ||.. +.+++|+.++..++++..+......-+ ..+..++..+ .| +++....+++.|...|..++...|+.
T Consensus 352 ~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~ 427 (456)
T 2c9o_A 352 LDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEK 427 (456)
T ss_dssp HHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCH
T ss_pred hhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCH
Confidence 99999 8876 699999999999999988764333211 1255666666 55 89999999999999999999999999
Q ss_pred hhHHHHHHHH
Q 009263 265 SDMDDAVDRL 274 (539)
Q Consensus 265 ~d~~~a~~~~ 274 (539)
+|+.+|+..+
T Consensus 428 ~~v~~~~~~~ 437 (456)
T 2c9o_A 428 EHVEEISELF 437 (456)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 109
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.22 E-value=8.3e-06 Score=82.63 Aligned_cols=177 Identities=13% Similarity=0.088 Sum_probs=111.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CC-CEEEEeCchhhHHHhhhhhHHHHHHHHHHH----hCCCeEEEEeCcch
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GV-PFYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDA 129 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~-~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~----~~~p~Il~iDEiD~ 129 (539)
.+..+||+||+|+||++.++++++.+ +. ++..+.... ...+++++..+. -....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45579999999999999999998865 32 322221111 112334443332 23457999999987
Q ss_pred -hhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC------CcCCccccCCCccceeeecC
Q 009263 130 -LATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR------DLLDPALLRPGRFDRKIRIR 202 (539)
Q Consensus 130 -l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~------~~ld~al~r~gRf~~~i~v~ 202 (539)
+... ..+.|+..++. ++.++++|.+++.+ ..+.+++.+ | +.++.+.
T Consensus 88 kl~~~----------------------~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r-~~~~~~~ 140 (343)
T 1jr3_D 88 GPNAA----------------------INEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALAN--R-SVQVTCQ 140 (343)
T ss_dssp CCCTT----------------------HHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTT--T-CEEEEEC
T ss_pred CCChH----------------------HHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHh--C-ceEEEee
Confidence 5321 24556666653 23344444444432 245567776 4 3578899
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 009263 203 APNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 274 (539)
Q Consensus 203 ~P~~~er~~il~~~l~~~~~~~~~~-~~~la~~t~g~s~~dl~~lv~~A~~~A~~~~~~~I~~~d~~~a~~~~ 274 (539)
+++.++....++..+...++.-+.+ +..++..+.| +.+++.+.+.....++ +...||.+++...+...
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 9999999999988887765442222 5566766655 6777777766665543 34579999998887654
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.21 E-value=6e-06 Score=75.58 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFY 88 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~ 88 (539)
.+.|.||+|+|||||++.+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998865543
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.07 E-value=7.1e-06 Score=77.12 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
|+.++.-++|+||||+|||+|++.++...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566677999999999999999999986677888887654
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.03 E-value=2.2e-05 Score=98.38 Aligned_cols=133 Identities=22% Similarity=0.228 Sum_probs=88.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHhhhhhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcC
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 139 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~ 139 (539)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|.-+... .+..++|||+++.....+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLS--- 674 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERILS--- 674 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHH---
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHH---
Confidence 46789999999999999999999999999999986443 23445566665544 448899999987543211
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHH-----hc-C--CCCCCcEEEEEecCC----CCcCCccccCCCccceeeecCCCCHH
Q 009263 140 DTTDHLYNAATQERETTLNQLLIE-----LD-G--FDTGKGVIFLAATNR----RDLLDPALLRPGRFDRKIRIRAPNAK 207 (539)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~ll~~-----ld-~--~~~~~~vivIaatn~----~~~ld~al~r~gRf~~~i~v~~P~~~ 207 (539)
...+........+... +. | +.-+.++.|++|.|. ...|+++|.. || +.|.+..||.+
T Consensus 675 --------vv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 675 --------AVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --------HHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --------HHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 0111111111111111 11 1 223345777888883 3478999998 77 56999999998
Q ss_pred HHHHHH
Q 009263 208 GRTEIL 213 (539)
Q Consensus 208 er~~il 213 (539)
...+|+
T Consensus 744 ~i~ei~ 749 (3245)
T 3vkg_A 744 MIAQVM 749 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877775
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.03 E-value=9.6e-06 Score=76.74 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
|+.++..++|+||||+|||+|++.++... +.++++++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 35566679999999999999999999654 5566666543
No 114
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.99 E-value=1.1e-05 Score=78.32 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=24.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGV 85 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~ 85 (539)
.++++|+||||||||++|+++|+....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999997643
No 115
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.99 E-value=4.6e-05 Score=72.97 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=29.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHH--Hh--cCCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIA--GE--AGVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA--~~--~~~~~~~~~~~ 93 (539)
|+.++..+.|.||+|+|||+|++.++ .. .+...++++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 45666779999999999999999998 33 34555555543
No 116
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.97 E-value=0.00018 Score=78.30 Aligned_cols=182 Identities=15% Similarity=0.131 Sum_probs=99.3
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc-------CCCEEEEeC
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAG 92 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-------~~~~~~~~~ 92 (539)
..|.....++|.+...++|.+.+... ...++-++|+||+|+|||+||+.+++.. ...++.++.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~ 187 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV 187 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC
Confidence 34556678999999988887765321 0234568999999999999999997532 112343333
Q ss_pred chh-----hHHHh------h----------hhhHHHHHHHHHH-H-hCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhh
Q 009263 93 SEF-----VEVLV------G----------VGSARIRDLFKRA-K-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 149 (539)
Q Consensus 93 ~~~-----~~~~~------g----------~~~~~~~~~f~~a-~-~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~ 149 (539)
+.. ...+. + .....+...+... . ...|.+|+||+++...
T Consensus 188 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~------------------ 249 (591)
T 1z6t_A 188 GKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW------------------ 249 (591)
T ss_dssp ESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH------------------
T ss_pred CCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH------------------
Confidence 221 11110 0 0011122222222 1 2268899999997521
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCCCHH
Q 009263 150 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLS 229 (539)
Q Consensus 150 ~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~~~~ 229 (539)
.+.. + ..+..||.||..+..... . . +....+..+...+.++-.++|..++............
T Consensus 250 ----------~l~~---l--~~~~~ilvTsR~~~~~~~-~-~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~ 311 (591)
T 1z6t_A 250 ----------VLKA---F--DSQCQILLTTRDKSVTDS-V-M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH 311 (591)
T ss_dssp ----------HHHT---T--CSSCEEEEEESCGGGGTT-C-C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHH
T ss_pred ----------HHHH---h--cCCCeEEEECCCcHHHHh-c-C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHH
Confidence 1111 2 234566667765432211 1 1 1211111224678888899998877542211223467
Q ss_pred HHHhhCCCCCHHHHHHHHH
Q 009263 230 SYAKNLPGWTGARLAQLVQ 248 (539)
Q Consensus 230 ~la~~t~g~s~~dl~~lv~ 248 (539)
.+++.+.| .|-.|..+..
T Consensus 312 ~i~~~~~G-~PLal~~~a~ 329 (591)
T 1z6t_A 312 SIIKECKG-SPLVVSLIGA 329 (591)
T ss_dssp HHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHH
Confidence 88888888 5766665543
No 117
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.94 E-value=1.8e-05 Score=75.54 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=50.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh--c-------CCCEEEEeCchh--hH----H--Hhhh---------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE--A-------GVPFYQMAGSEF--VE----V--LVGV--------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~--~-------~~~~~~~~~~~~--~~----~--~~g~--------------- 102 (539)
|+.++..++|+||||+|||+|++.++.. . +...++++.... .. . ..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4566677999999999999999999985 2 456777776541 11 0 0010
Q ss_pred hhH----HHHHHHHHHHhCCCeEEEEeCcchhhh
Q 009263 103 GSA----RIRDLFKRAKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 103 ~~~----~~~~~f~~a~~~~p~Il~iDEiD~l~~ 132 (539)
... .+..+...+....|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 001 122233334456899999999998764
No 118
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.88 E-value=4.3e-05 Score=80.64 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=39.7
Q ss_pred hhceecCCCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---CC-CEE
Q 009263 13 FAMFSQGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GV-PFY 88 (539)
Q Consensus 13 ~~~~~~~~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~-~~~ 88 (539)
..-|++++.+++|+++- ++.++.+..++..+... ...++|.||||||||+++.+++..+ +. .++
T Consensus 11 ~~~~~~~~~p~~~~~Ln--~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il 78 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLT--EGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGII 78 (459)
T ss_dssp ----------CCSSCCC--HHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred cCCCccccCCCccccCC--HHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEE
Confidence 44578889999999985 23334444444444332 1278999999999999999998876 33 455
Q ss_pred EEeCc
Q 009263 89 QMAGS 93 (539)
Q Consensus 89 ~~~~~ 93 (539)
.+..+
T Consensus 79 ~~a~T 83 (459)
T 3upu_A 79 LAAPT 83 (459)
T ss_dssp EEESS
T ss_pred EecCc
Confidence 55444
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.84 E-value=4e-05 Score=78.23 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=51.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHH----hhh-----------hhHHHHHHHHH-HH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----VGV-----------GSARIRDLFKR-AK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~----~g~-----------~~~~~~~~f~~-a~ 115 (539)
|+.++..++|+||||+|||+||..++..+ +.++++++...-.... .+. ....+...+.. .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566679999999999999999998764 6788888765422221 111 11222223332 23
Q ss_pred hCCCeEEEEeCcchhhh
Q 009263 116 VNKPSVIFIDEIDALAT 132 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~ 132 (539)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45788999999999874
No 120
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.83 E-value=5e-05 Score=77.04 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=50.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHH----hhh-----------hhHHHHHHHH-HHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----VGV-----------GSARIRDLFK-RAK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~----~g~-----------~~~~~~~~f~-~a~ 115 (539)
|+.++.-++|+||||+|||+|+..++..+ +.++++++........ .+. ....+..... ..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 35556679999999999999999998875 6678888765432210 110 1111111222 223
Q ss_pred hCCCeEEEEeCcchhhh
Q 009263 116 VNKPSVIFIDEIDALAT 132 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~ 132 (539)
...|++++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999998875
No 121
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.83 E-value=3.6e-05 Score=77.40 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=51.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh--hHH---H---hhh---------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEF--VEV---L---VGV--------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~~--~~~---~---~g~--------------- 102 (539)
|+.++..++|+||||+|||+|+..+|..+ +.++++++...- ... + .+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45666679999999999999999999875 456788876542 110 0 000
Q ss_pred hhH----HHHHHHHHHHh-CCCeEEEEeCcchhhhh
Q 009263 103 GSA----RIRDLFKRAKV-NKPSVIFIDEIDALATR 133 (539)
Q Consensus 103 ~~~----~~~~~f~~a~~-~~p~Il~iDEiD~l~~~ 133 (539)
... .+..+...... ..+.+|+||.+..+...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 001 12223333444 67899999999998753
No 122
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.81 E-value=4.2e-05 Score=72.25 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhcCC---------CEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---------PFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~~~---------~~~~~~~~~ 94 (539)
|+.++.-+.|.||+|+|||+|++.++..... ..++++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4566667999999999999999999985432 366666543
No 123
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.80 E-value=3e-05 Score=78.76 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=50.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH----Hhhh-----------hhHHHHHHHH-HHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV----LVGV-----------GSARIRDLFK-RAK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~----~~g~-----------~~~~~~~~f~-~a~ 115 (539)
|+.++..++|+||||+|||+|+..++..+ +.++++++...-... ..|. .......+.. .+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45566679999999999999999998754 567777776542211 1111 1111222222 233
Q ss_pred hCCCeEEEEeCcchhhh
Q 009263 116 VNKPSVIFIDEIDALAT 132 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~ 132 (539)
...|++|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999873
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.78 E-value=6e-05 Score=68.29 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=33.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
+..++|+|+||+||||++++++..++.+++.++...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 356899999999999999999999999998877665543
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.77 E-value=0.00052 Score=80.91 Aligned_cols=179 Identities=15% Similarity=0.172 Sum_probs=103.5
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc---C----CCEEEEeC
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---G----VPFYQMAG 92 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~----~~~~~~~~ 92 (539)
..|.....++|.+...++|.+.+.... ..++-+.|+|+.|+|||+||+.+++.. . ..++.++.
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 345566789999999888877653211 234568899999999999999998752 1 22334443
Q ss_pred chh-----hHHH------hh----------hhhHHHHHHHHHHHhC--CCeEEEEeCcchhhhhhcCCcCCchhhhhhhh
Q 009263 93 SEF-----VEVL------VG----------VGSARIRDLFKRAKVN--KPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 149 (539)
Q Consensus 93 ~~~-----~~~~------~g----------~~~~~~~~~f~~a~~~--~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~ 149 (539)
+.. .... .+ .....+...+...... .+.+|+||+++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------ 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------ 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH------------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH------------------
Confidence 331 1000 00 0112223333333333 37799999997521
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCC-CCHHHHHHHHHHHhccCCCCCCCCH
Q 009263 150 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA-PNAKGRTEILKIHASKVKMSDSVDL 228 (539)
Q Consensus 150 ~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~-P~~~er~~il~~~l~~~~~~~~~~~ 228 (539)
.++.+ ..+..||.||..+..... .. .....+.++. .+.++-.++|..+............
T Consensus 250 -------------~~~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~ 310 (1249)
T 3sfz_A 250 -------------VLKAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEA 310 (1249)
T ss_dssp -------------HHTTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHH
T ss_pred -------------HHHhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHH
Confidence 11112 234466667775543221 11 1234667775 8888888999877744332222336
Q ss_pred HHHHhhCCCCCHHHHHHH
Q 009263 229 SSYAKNLPGWTGARLAQL 246 (539)
Q Consensus 229 ~~la~~t~g~s~~dl~~l 246 (539)
..+++.+.|. |-.|+.+
T Consensus 311 ~~i~~~~~gl-PLal~~~ 327 (1249)
T 3sfz_A 311 HSIIKECKGS-PLVVSLI 327 (1249)
T ss_dssp HHHHHHTTTC-HHHHHHH
T ss_pred HHHHHHhCCC-HHHHHHH
Confidence 7888888874 6666654
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.76 E-value=6.2e-05 Score=76.26 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=50.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh--hHH---H---hhh---------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEF--VEV---L---VGV--------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~~--~~~---~---~g~--------------- 102 (539)
|+.++.-++|+||||+|||+|+..+|... +.++++++...- ... + .+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45555668999999999999999999863 456778876542 110 0 000
Q ss_pred -hh---HHHHHHHHHHHh--CCCeEEEEeCcchhhhh
Q 009263 103 -GS---ARIRDLFKRAKV--NKPSVIFIDEIDALATR 133 (539)
Q Consensus 103 -~~---~~~~~~f~~a~~--~~p~Il~iDEiD~l~~~ 133 (539)
.. ..+..+...... ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 01 111122233344 67889999999998754
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.68 E-value=7.5e-05 Score=75.93 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=51.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH----Hhhh-----------hhHHHHHHHHH-HH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV----LVGV-----------GSARIRDLFKR-AK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~----~~g~-----------~~~~~~~~f~~-a~ 115 (539)
|+.++..++|+||||+|||+||..++..+ +.++++++...-... ..+. ....+...+.. .+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 35666779999999999999999998764 668888887432211 0111 11223333332 23
Q ss_pred hCCCeEEEEeCcchhhh
Q 009263 116 VNKPSVIFIDEIDALAT 132 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~ 132 (539)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46788999999998874
No 128
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.66 E-value=0.0001 Score=89.11 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=56.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHHHhhh----------------hhHHHHHHHHHHH
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV----------------GSARIRDLFKRAK 115 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~~~g~----------------~~~~~~~~f~~a~ 115 (539)
|+.++..++|+||||||||+||.+++.+. |.+.++++..+..+..... ++...+-.....+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 56788889999999999999999997654 7888888887654432211 1112222233344
Q ss_pred hCCCeEEEEeCcchhhhh
Q 009263 116 VNKPSVIFIDEIDALATR 133 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l~~~ 133 (539)
...|++|+||++..+...
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 577999999999998543
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.64 E-value=8e-05 Score=76.87 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=48.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---------CCCEEEEeCchhh-HH-------Hhhh---------------
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEFV-EV-------LVGV--------------- 102 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---------~~~~~~~~~~~~~-~~-------~~g~--------------- 102 (539)
|+.+..-++|+||||+|||+|++.++-.. +...++++..... .. ..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 46666779999999999999999876443 2347777765421 00 0110
Q ss_pred ----hhHHHHHHHHHHHhCCCeEEEEeCcchhhhh
Q 009263 103 ----GSARIRDLFKRAKVNKPSVIFIDEIDALATR 133 (539)
Q Consensus 103 ----~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~ 133 (539)
....+..+...+....|.+|+||++..+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0011222233344567999999999887643
No 130
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.63 E-value=0.00021 Score=68.06 Aligned_cols=39 Identities=36% Similarity=0.480 Sum_probs=30.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
|+.++..++|+||||+|||+|+..++... +.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45666779999999999999998887643 6677777654
No 131
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.56 E-value=0.00017 Score=68.79 Aligned_cols=39 Identities=31% Similarity=0.305 Sum_probs=30.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh----cCCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE----AGVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~----~~~~~~~~~~~ 93 (539)
|+.++.-++|+|+||+|||+|+..+|.. .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4566677999999999999999887643 36788887654
No 132
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.56 E-value=8.9e-05 Score=73.39 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=48.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhHH----Hhhh-----------hhHHH-HHHHHH-
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEV----LVGV-----------GSARI-RDLFKR- 113 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~~~~~~~----~~g~-----------~~~~~-~~~f~~- 113 (539)
+.++ -++|+||||+|||+|+..++..+ +..+++++..+-... -.|. ....+ ..+.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4444 58899999999999988886654 567888876543211 1111 11111 222222
Q ss_pred --HHhCCCeEEEEeCcchhhh
Q 009263 114 --AKVNKPSVIFIDEIDALAT 132 (539)
Q Consensus 114 --a~~~~p~Il~iDEiD~l~~ 132 (539)
.+...|++|+||-|..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2456799999999999874
No 133
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.55 E-value=0.0001 Score=66.72 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.8
Q ss_pred CCCceEEEECCCCCcHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKA 78 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~a 78 (539)
..+.-+.|.||+|+|||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4455689999999999999994
No 134
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.55 E-value=0.00019 Score=72.87 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=31.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhcC---------CCEEEEeCch
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGSE 94 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~~---------~~~~~~~~~~ 94 (539)
|+.++.-+.|+||||+|||+|++.++.... ..+++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 455666699999999999999999998862 3557776644
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.53 E-value=0.00023 Score=70.12 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 32 DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 32 ~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
++..+.+.+++..+... ......|..++|.||||+||||+++.++.+++..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34445555555543222 1123446679999999999999999999988656677777555
No 136
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.52 E-value=0.00015 Score=73.62 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=45.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeC-chhh---------HHHhhhhhHHHHHHHHHHHhCCCeEEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAG-SEFV---------EVLVGVGSARIRDLFKRAKVNKPSVIFI 124 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~-~~~~---------~~~~g~~~~~~~~~f~~a~~~~p~Il~i 124 (539)
...++|.||+|+||||+.+++++.. +..++.+.. .++. ....+.....+...+..+....|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3458899999999999999998865 233333211 1110 0001111123455778888899999999
Q ss_pred eCcc
Q 009263 125 DEID 128 (539)
Q Consensus 125 DEiD 128 (539)
||+-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9984
No 137
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.52 E-value=0.00014 Score=72.96 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
|+.++.-++|+||||+|||+|+..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555666999999999999999999875
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.46 E-value=9.5e-05 Score=68.58 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=29.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
+.++..++|.||||+||||+++.+++.++.+++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34556799999999999999999999999887654
No 139
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.45 E-value=0.00019 Score=70.34 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
|+..+.-++|+||||+|||+|++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45566679999999999999999998644
No 140
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.42 E-value=0.00031 Score=67.84 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=34.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
...|..++|.||||+||||+++.++..++.+++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3456779999999999999999999999877777777766
No 141
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.42 E-value=0.00026 Score=74.58 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=32.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~ 93 (539)
|+.++.-++|.|+||+|||+|+..+|..+ +.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56677779999999999999999998754 5688887753
No 142
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.41 E-value=0.0047 Score=66.47 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=93.7
Q ss_pred cCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHH----hcCCCE---EEEeCchh-----h
Q 009263 29 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG----EAGVPF---YQMAGSEF-----V 96 (539)
Q Consensus 29 ~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~----~~~~~~---~~~~~~~~-----~ 96 (539)
+|.+..+++|.+.+..-. ....+.+.|+|+.|+|||+||+.+++ .....| +.++.+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 599999888887764221 12345688999999999999999997 332222 22333221 1
Q ss_pred HH---H---hhhh-------------hHHHHHHHHHHHhCC-CeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHH
Q 009263 97 EV---L---VGVG-------------SARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 156 (539)
Q Consensus 97 ~~---~---~g~~-------------~~~~~~~f~~a~~~~-p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (539)
.. . .+.. ...+...+....... ..+|+||+++... .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~-----------------------~- 257 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE-----------------------T- 257 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH-----------------------H-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch-----------------------h-
Confidence 10 0 1100 111233444444454 7899999997631 0
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecCCCCHHHHHHHHHHHhccCCCCCCC--CHHHHHhh
Q 009263 157 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV--DLSSYAKN 234 (539)
Q Consensus 157 l~~ll~~ld~~~~~~~vivIaatn~~~~ld~al~r~gRf~~~i~v~~P~~~er~~il~~~l~~~~~~~~~--~~~~la~~ 234 (539)
+ .+. .. .+..||.||....... ... .....+.++..+.++-.++|..+.......... ....+++.
T Consensus 258 ~-~~~-~~------~gs~ilvTTR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~ 325 (549)
T 2a5y_B 258 I-RWA-QE------LRLRCLVTTRDVEISN-AAS---QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIEL 325 (549)
T ss_dssp H-HHH-HH------TTCEEEEEESBGGGGG-GCC---SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHH
T ss_pred h-ccc-cc------CCCEEEEEcCCHHHHH-HcC---CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Confidence 0 111 11 3445666776533211 111 123568899999999999998875332210110 13456666
Q ss_pred CCCCCHHHHHHH
Q 009263 235 LPGWTGARLAQL 246 (539)
Q Consensus 235 t~g~s~~dl~~l 246 (539)
+.| .|-.|..+
T Consensus 326 c~G-lPLAl~~~ 336 (549)
T 2a5y_B 326 SSG-NPATLMMF 336 (549)
T ss_dssp HTT-CHHHHHHH
T ss_pred hCC-ChHHHHHH
Confidence 666 35555444
No 143
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.39 E-value=0.00012 Score=66.65 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=28.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
+..++|+||||+|||++++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999988754
No 144
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.39 E-value=0.0013 Score=61.93 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=26.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 92 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~ 92 (539)
..+++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358999999999999999998765 667665554
No 145
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.36 E-value=0.00014 Score=66.66 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=29.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
...+.-++|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456679999999999999999999999987765
No 146
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.36 E-value=0.00024 Score=70.17 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=30.8
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeC
Q 009263 54 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAG 92 (539)
Q Consensus 54 ~g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~ 92 (539)
+++.++.-++|.||||+|||+|++.++..+ |.++++++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 356667779999999999999999998865 446766654
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.36 E-value=0.00013 Score=66.83 Aligned_cols=40 Identities=33% Similarity=0.504 Sum_probs=33.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
+..+..++|.||||+||||+++.+++..+.+.+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4556679999999999999999999988777777776654
No 148
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.35 E-value=0.0017 Score=69.52 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=52.4
Q ss_pred eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--cCCccccCCCccce
Q 009263 120 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD--LLDPALLRPGRFDR 197 (539)
Q Consensus 120 ~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~--~ld~al~r~gRf~~ 197 (539)
-+|+|||++.|.... .......+..+... ....+|.+|.+|.+|. .++..++. -|..
T Consensus 345 ivvVIDE~~~L~~~~---------------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~ 403 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---------------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPT 403 (574)
T ss_dssp EEEEESCCTTHHHHT---------------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCE
T ss_pred EEEEEeCHHHHhhhh---------------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhcc
Confidence 489999999886431 11223334444433 3557899999999988 78877776 6778
Q ss_pred eeecCCCCHHHHHHHHH
Q 009263 198 KIRIRAPNAKGRTEILK 214 (539)
Q Consensus 198 ~i~v~~P~~~er~~il~ 214 (539)
.|.+...+..+...++.
T Consensus 404 RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 404 RIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEECCSCHHHHHHHHS
T ss_pred EEEEEcCCHHHHHHhcC
Confidence 88898888888877763
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.31 E-value=0.0036 Score=62.03 Aligned_cols=73 Identities=25% Similarity=0.292 Sum_probs=47.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-------Hh---h----------hhhHHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-------LV---G----------VGSARIRDLFKR 113 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-------~~---g----------~~~~~~~~~f~~ 113 (539)
.++.-++|.||+|+||||++..+|..+ +..+..+++..+... |. + .........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456679999999999999999999865 555665554433211 10 0 011112334555
Q ss_pred HHhCCCeEEEEeCcch
Q 009263 114 AKVNKPSVIFIDEIDA 129 (539)
Q Consensus 114 a~~~~p~Il~iDEiD~ 129 (539)
+....|.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 6667889999998753
No 150
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.29 E-value=0.00043 Score=72.59 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~ 93 (539)
|+.++.-++|.|+||+|||+|+..+|... +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56777779999999999999999998753 5688887763
No 151
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.28 E-value=6.3e-05 Score=69.09 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=23.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQM 90 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~ 90 (539)
.-++++||+|+|||+++..++..+ +.+++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999997776543 5555544
No 152
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.27 E-value=0.00061 Score=69.70 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=49.3
Q ss_pred hhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhcC----CCEEEEeCc-hh--------h-HHHhhhhhHHHHHHHHHH
Q 009263 49 ELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAGS-EF--------V-EVLVGVGSARIRDLFKRA 114 (539)
Q Consensus 49 ~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~----~~~~~~~~~-~~--------~-~~~~g~~~~~~~~~f~~a 114 (539)
..+..+...++..++|.||+|+||||+++++++... ..++.+... ++ . ...++.....+...+..+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHH
Confidence 344444455666799999999999999999998652 233332211 00 0 000111112335566777
Q ss_pred HhCCCeEEEEeCcc
Q 009263 115 KVNKPSVIFIDEID 128 (539)
Q Consensus 115 ~~~~p~Il~iDEiD 128 (539)
....|.+|++||+-
T Consensus 206 L~~~pd~illdE~~ 219 (372)
T 2ewv_A 206 LREDPDVIFVGEMR 219 (372)
T ss_dssp TTSCCSEEEESCCC
T ss_pred hhhCcCEEEECCCC
Confidence 77899999999984
No 153
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.24 E-value=0.00018 Score=69.81 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=44.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC----CCEEEEeCchh--h---------HHHhhhhhHHHHHHHHHHHhCCCeE
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAGSEF--V---------EVLVGVGSARIRDLFKRAKVNKPSV 121 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~----~~~~~~~~~~~--~---------~~~~g~~~~~~~~~f~~a~~~~p~I 121 (539)
.++..++|.||+|+||||+++++++... ..++.. .... . ...++.....++..+..+....|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc-CCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 4455689999999999999999998652 222221 1110 0 0001111123466677777778999
Q ss_pred EEEeCcc
Q 009263 122 IFIDEID 128 (539)
Q Consensus 122 l~iDEiD 128 (539)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999984
No 154
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.21 E-value=0.00056 Score=74.03 Aligned_cols=34 Identities=38% Similarity=0.483 Sum_probs=27.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
..++|+||||||||+++.+++..+ +.+++.+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 468999999999999999998754 6677666544
No 155
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.21 E-value=0.0029 Score=58.23 Aligned_cols=31 Identities=26% Similarity=0.154 Sum_probs=26.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQM 90 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~ 90 (539)
..+++|+++|.|||++|-++|-++ |.++..+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 358999999999999999998765 7777666
No 156
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.20 E-value=0.00081 Score=65.10 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=32.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh---cCCCEEEEeCchhhH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGSEFVE 97 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~---~~~~~~~~~~~~~~~ 97 (539)
+.-|+|.|+||+|||++++.++.. .|.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 456899999999999999999998 788888777665543
No 157
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.20 E-value=0.00022 Score=63.91 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=27.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5789999999999999999999998876543
No 158
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.19 E-value=0.00089 Score=66.83 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
|+.++.-++|.|+||+|||+|+..+|... +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56777779999999999999999998654 4677777653
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.18 E-value=0.0017 Score=67.42 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=50.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-------H------------h-hhhhHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-------L------------V-GVGSARIRDLFKRA 114 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-------~------------~-g~~~~~~~~~f~~a 114 (539)
+|.-+++.|++|+||||++..+|..+ +..+..+++..+... | . .......+..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999998765 666766665543211 0 0 11222345667777
Q ss_pred HhCCCeEEEEeCcchh
Q 009263 115 KVNKPSVIFIDEIDAL 130 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~l 130 (539)
....+++++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777889999987543
No 160
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.17 E-value=0.00026 Score=63.64 Aligned_cols=30 Identities=30% Similarity=0.707 Sum_probs=26.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 88 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~ 88 (539)
+..+.|+||||+||||+++.+++.++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 346899999999999999999999987554
No 161
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.17 E-value=0.0027 Score=67.26 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=50.5
Q ss_pred CCe-EEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--cCCccccCCCc
Q 009263 118 KPS-VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD--LLDPALLRPGR 194 (539)
Q Consensus 118 ~p~-Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~vivIaatn~~~--~ld~al~r~gR 194 (539)
-|. +|+|||+..+.... .......+..+... ....++.+|.+|++|. .++..++. -
T Consensus 296 lP~ivlvIDE~~~ll~~~---------------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n 354 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV---------------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--N 354 (512)
T ss_dssp CCEEEEEEETHHHHHHHH---------------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--H
T ss_pred CCcEEEEEeCHHHHHhhh---------------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--h
Confidence 354 89999998875421 11222333333322 2345788899999987 57777766 6
Q ss_pred cceeeecCCCCHHHHHHHHH
Q 009263 195 FDRKIRIRAPNAKGRTEILK 214 (539)
Q Consensus 195 f~~~i~v~~P~~~er~~il~ 214 (539)
|...|.+...+..+...++.
T Consensus 355 ~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 355 IPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp CCEEEEECCSSHHHHHHHHS
T ss_pred cCCeEEEEcCCHHHHHHhcC
Confidence 77888898899888887774
No 162
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.16 E-value=0.00032 Score=63.61 Aligned_cols=33 Identities=33% Similarity=0.662 Sum_probs=28.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+..|+|+|+||+|||++++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 455799999999999999999999998877643
No 163
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.16 E-value=0.00021 Score=65.38 Aligned_cols=31 Identities=39% Similarity=0.643 Sum_probs=26.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh-cCCCEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE-AGVPFYQ 89 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~-~~~~~~~ 89 (539)
+..++|+|+||||||++++.++.. ++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 456999999999999999999999 6766654
No 164
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.14 E-value=0.00026 Score=63.94 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=26.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
.++|.||||+|||++++.+|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
No 165
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.14 E-value=0.00031 Score=63.93 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=26.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
.|+|.|+||+|||++++.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 58999999999999999999999988764
No 166
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.14 E-value=0.00034 Score=62.74 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=28.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
..++|.|+||||||++++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999988753
No 167
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.13 E-value=0.00046 Score=67.51 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3445568999999999999999999854
No 168
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.13 E-value=0.00019 Score=73.23 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=22.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.-+.|.||+|+|||||.+.|++-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 444558899999999999999999854
No 169
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.12 E-value=0.0004 Score=65.64 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=43.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch-------hhHHHhhhh-----hHHHHHHHHHHHh----CCCe
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE-------FVEVLVGVG-----SARIRDLFKRAKV----NKPS 120 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~-------~~~~~~g~~-----~~~~~~~f~~a~~----~~p~ 120 (539)
.-++++||+|+|||+++..++.++ +..++.+.... +.+. .|.. .....+++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 347789999999999999888766 56666664222 1110 1100 0112344554443 3478
Q ss_pred EEEEeCcchh
Q 009263 121 VIFIDEIDAL 130 (539)
Q Consensus 121 Il~iDEiD~l 130 (539)
+|+|||++.+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999875
No 170
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.09 E-value=0.00047 Score=63.77 Aligned_cols=33 Identities=39% Similarity=0.593 Sum_probs=28.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.|..|+|.|+||+||||+++.++..++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 445699999999999999999999999886654
No 171
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.06 E-value=0.00039 Score=70.47 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.-+.|.||+|+|||||.+.|++-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 444558899999999999999999844
No 172
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.06 E-value=0.00045 Score=67.26 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=23.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++..
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455568899999999999999999844
No 173
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.05 E-value=0.0025 Score=60.72 Aligned_cols=37 Identities=30% Similarity=0.314 Sum_probs=30.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc-hhhH
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-EFVE 97 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~-~~~~ 97 (539)
.++++||+|+|||.++.+++...+.+++.+... .+..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 589999999999999999999988888777655 4433
No 174
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.04 E-value=0.00036 Score=67.37 Aligned_cols=32 Identities=38% Similarity=0.434 Sum_probs=28.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
-++|.||||||||++|+.+|+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988876654
No 175
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.01 E-value=0.00044 Score=63.20 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=29.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
|.-|+|.|+||+||||+++.++..++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 456899999999999999999999987664 444443
No 176
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.00 E-value=0.00046 Score=70.04 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=23.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+..+..+.|.||+|+|||||++++++-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3445558899999999999999999844
No 177
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.00 E-value=0.00055 Score=63.34 Aligned_cols=31 Identities=39% Similarity=0.722 Sum_probs=27.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
+.-++|.|+||+||||+++.|++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877664
No 178
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.99 E-value=0.00051 Score=64.58 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=28.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+..|+|.|+||+||||+++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 355799999999999999999999999766543
No 179
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.99 E-value=0.00059 Score=61.82 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=31.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
.+..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 44568899999999999999999987 88998887543
No 180
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.97 E-value=0.00046 Score=65.00 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=31.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
.+.++.|+|.||||+||+|.|+.|+..++.+.+ +..+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 456677899999999999999999999987654 444444
No 181
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.97 E-value=0.00054 Score=62.48 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=28.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+..|+|.|+||+|||++++.++..++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 355789999999999999999999998765543
No 182
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.97 E-value=0.00042 Score=63.09 Aligned_cols=31 Identities=35% Similarity=0.558 Sum_probs=26.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
+..++|.|+||+||||+++.+++.++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3458999999999999999999999876543
No 183
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.97 E-value=0.00038 Score=62.78 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=25.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHH-hcCCCEEEEeCc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAG-EAGVPFYQMAGS 93 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~-~~~~~~~~~~~~ 93 (539)
|.-++|.|+||+||||+++.++. ..+ +..++..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRD 35 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHH
Confidence 35689999999999999999998 455 3444433
No 184
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.95 E-value=0.00049 Score=61.49 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
-++|.||||+||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8888887654
No 185
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.95 E-value=0.00054 Score=62.79 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=28.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+..|+|.|+||+||||+++.++..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345799999999999999999999999876543
No 186
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.95 E-value=0.00041 Score=62.89 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=23.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 88 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~ 88 (539)
+.-|+|.|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999877
No 187
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.94 E-value=0.00053 Score=61.54 Aligned_cols=30 Identities=30% Similarity=0.630 Sum_probs=26.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
..|+|.|+||+|||++++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987664
No 188
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.94 E-value=0.0068 Score=63.05 Aligned_cols=83 Identities=28% Similarity=0.382 Sum_probs=59.4
Q ss_pred eEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHhcCCC--------CCCcEEEEEec----CCCCcCCc
Q 009263 120 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--------TGKGVIFLAAT----NRRDLLDP 187 (539)
Q Consensus 120 ~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~--------~~~~vivIaat----n~~~~ld~ 187 (539)
.||++||||.++.+..+.. .+.....+...||..+++-. ..+++++|+|. +.|..+-|
T Consensus 252 ~il~~DEidki~~~~~~~~----------~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlip 321 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSG----------ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIP 321 (444)
T ss_dssp CEEEEETGGGGSCCSSCSS----------SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCH
T ss_pred CeeeHHHHHHHhhccCCCC----------CCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcch
Confidence 3899999999986533211 22223345667888887631 34678899887 23444557
Q ss_pred cccCCCccceeeecCCCCHHHHHHHHH
Q 009263 188 ALLRPGRFDRKIRIRAPNAKGRTEILK 214 (539)
Q Consensus 188 al~r~gRf~~~i~v~~P~~~er~~il~ 214 (539)
.|+. ||..++.++.++.++..+|+.
T Consensus 322 el~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 322 ELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred HHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 8887 999999999999999999983
No 189
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.94 E-value=0.0026 Score=66.02 Aligned_cols=73 Identities=23% Similarity=0.212 Sum_probs=47.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH----------Hhhh----------hhHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV----------LVGV----------GSARIRDLFKRA 114 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~----------~~g~----------~~~~~~~~f~~a 114 (539)
+|.-+++.||+|+||||++..+|..+ +..+..+++..+... ..+. ........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999998765 666666655432211 0000 111223455556
Q ss_pred HhCCCeEEEEeCcchh
Q 009263 115 KVNKPSVIFIDEIDAL 130 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~l 130 (539)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6567889999988553
No 190
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.92 E-value=0.00065 Score=62.87 Aligned_cols=36 Identities=36% Similarity=0.680 Sum_probs=28.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
++..+.|.||+|+||||+++.+++.+|..+ +++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 456789999999999999999999997544 444444
No 191
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.92 E-value=0.00051 Score=69.69 Aligned_cols=27 Identities=44% Similarity=0.570 Sum_probs=22.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.-+.|.||+|+|||||.+.+|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 445568899999999999999999844
No 192
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.92 E-value=0.0021 Score=62.10 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||.+.+++..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999999854
No 193
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.91 E-value=0.00051 Score=70.03 Aligned_cols=27 Identities=44% Similarity=0.687 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.-+.|.||+|+|||||.+.||+-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 444568899999999999999999844
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.91 E-value=0.00066 Score=61.18 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=28.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
+..++|.||||+|||++++.+++.+|.+++ +..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 456899999999999999999999876544 44443
No 195
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.00053 Score=69.66 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.-+.|.||+|+|||||.+.||+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344558899999999999999999854
No 196
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.91 E-value=0.00056 Score=64.66 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=27.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+..|+|.|+||+||||+++.|+..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 456799999999999999999999998776543
No 197
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.89 E-value=0.00067 Score=63.45 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=26.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998877654
No 198
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.88 E-value=0.00056 Score=64.24 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=27.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
..|+|.|+||+||||+++.||..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999776654
No 199
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.88 E-value=0.001 Score=64.91 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.|++..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999999854
No 200
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.87 E-value=0.00058 Score=62.24 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=23.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.-++|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 201
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.87 E-value=0.00072 Score=64.78 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=29.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
..|..|+|.||||+||||+++.|+..++.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3566799999999999999999999998766543
No 202
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.87 E-value=0.00046 Score=69.88 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+..+.|.||+|+|||||.+.||+-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999854
No 203
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.87 E-value=0.00077 Score=60.18 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=26.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
.|+|.|+||+|||++++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999988764
No 204
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.86 E-value=0.00071 Score=63.21 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=26.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.|+|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999877654
No 205
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.86 E-value=0.001 Score=61.00 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=21.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998765
No 206
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.85 E-value=0.0008 Score=63.92 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
+..|+|.|+||+||||+++.||..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999776543
No 207
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.85 E-value=0.0066 Score=64.94 Aligned_cols=76 Identities=24% Similarity=0.205 Sum_probs=51.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH--------------Hh--------------hhh
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV--------------LV--------------GVG 103 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~--------------~~--------------g~~ 103 (539)
++.++..++|.||||+|||+|++.++... +.+++++...+-... +. -.+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45666679999999999999999998754 445666654321110 00 012
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCcchh
Q 009263 104 SARIRDLFKRAKVNKPSVIFIDEIDAL 130 (539)
Q Consensus 104 ~~~~~~~f~~a~~~~p~Il~iDEiD~l 130 (539)
....+.++..+....|.+|+||=+..+
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 345566777777789999999955444
No 208
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.85 E-value=0.00068 Score=62.28 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=29.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
+.-|+|.|+||+||||+++.++..++.+++ +..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 456999999999999999999999986654 434443
No 209
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.84 E-value=0.0011 Score=79.42 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=56.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH----------------HhhhhhHHHHHHHHHHHhCC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV----------------LVGVGSARIRDLFKRAKVNK 118 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~----------------~~g~~~~~~~~~f~~a~~~~ 118 (539)
.++.+.+|||+|||||+||-.++.++ |....+++...-... ++..++..+.-+...++..+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~ 1509 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1509 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCC
Confidence 33449999999999999998886543 677777766432211 23334566666677778899
Q ss_pred CeEEEEeCcchhhhhh
Q 009263 119 PSVIFIDEIDALATRR 134 (539)
Q Consensus 119 p~Il~iDEiD~l~~~~ 134 (539)
|++|+||.+.+|.++.
T Consensus 1510 ~~~vvvDsv~al~~~~ 1525 (1706)
T 3cmw_A 1510 VDVIVVDSVAALTPKA 1525 (1706)
T ss_dssp CSEEEESCSTTCCCTT
T ss_pred CCEEEEccHHhCCccc
Confidence 9999999999998764
No 210
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.84 E-value=0.0023 Score=60.53 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++-.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999999854
No 211
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.82 E-value=0.00046 Score=69.42 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=31.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 92 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~ 92 (539)
|+.++.-++|.|+||+|||+|+..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56777779999999999999999998764 678877765
No 212
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.81 E-value=0.00088 Score=61.93 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=27.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+.-|+|.|+||+|||++++.+++.++.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 345689999999999999999999998766543
No 213
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.81 E-value=0.001 Score=61.53 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=30.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 95 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~ 95 (539)
.++..+.|.||+|+||||+++++++.+ |...++++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345678899999999999999999988 554455654443
No 214
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.81 E-value=0.0007 Score=68.44 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+..+.|.||+|+|||||.+.||+-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 445568899999999999999999854
No 215
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.76 E-value=0.00066 Score=63.89 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=27.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 88 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~ 88 (539)
.+..|+|.||||+||||+++.+|..++.+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3457999999999999999999999997554
No 216
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.76 E-value=0.0044 Score=60.05 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3455568899999999999999999854
No 217
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.75 E-value=0.00087 Score=62.56 Aligned_cols=34 Identities=32% Similarity=0.544 Sum_probs=27.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
.++|.||||+||+|.|+.|++.++.+.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3789999999999999999999998755 444544
No 218
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.73 E-value=0.0089 Score=58.95 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCch
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSE 94 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~ 94 (539)
.+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45679999999999999999998754 55676666543
No 219
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.71 E-value=0.0004 Score=69.84 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=48.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCC--CEEEEeCch-hh-----HH--HhhhhhHHHHHHHHHHHhCCCeEEEEeCc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSE-FV-----EV--LVGVGSARIRDLFKRAKVNKPSVIFIDEI 127 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~--~~~~~~~~~-~~-----~~--~~g~~~~~~~~~f~~a~~~~p~Il~iDEi 127 (539)
++..++|.||+|+|||||++++++.... -.+.+.... +. .. +...+..+.+..+..|....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 3457999999999999999999997632 234444321 10 00 11002345677788888889999999998
Q ss_pred ch
Q 009263 128 DA 129 (539)
Q Consensus 128 D~ 129 (539)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 53
No 220
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.70 E-value=0.0011 Score=66.14 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=30.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
+..++|+||+|+|||++++.+|+.++.+++..+.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 45789999999999999999999999877777543
No 221
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.68 E-value=0.0014 Score=60.45 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=29.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc-CCCEEEEeC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAG 92 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~-~~~~~~~~~ 92 (539)
+.-|.|.|++|+||||+++.++..+ +.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4568999999999999999999998 577776653
No 222
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.67 E-value=0.0014 Score=59.72 Aligned_cols=31 Identities=29% Similarity=0.230 Sum_probs=27.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~---~~~~~~~~ 91 (539)
-+.|.|+||+||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88888765
No 223
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.67 E-value=0.013 Score=66.86 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=34.3
Q ss_pred cCcHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 29 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 29 ~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
+|.+..+++|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999988888776421 12356889999999999999999864
No 224
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.65 E-value=0.0013 Score=67.08 Aligned_cols=27 Identities=44% Similarity=0.696 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+..+.|.||+|+|||||.+.||+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 345568899999999999999999854
No 225
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.65 E-value=0.0027 Score=67.55 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=32.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~ 93 (539)
|+.++.-++|.|+||+|||+|+..+|..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 56677779999999999999999998765 5678887754
No 226
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.64 E-value=0.0039 Score=61.79 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++..+.|.||+|+|||||++.+++..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3455569999999999999999999854
No 227
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.63 E-value=0.005 Score=69.83 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~ 81 (539)
..+..++|.||+|+||||+.+.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3455689999999999999999975
No 228
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.63 E-value=0.001 Score=60.53 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=26.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcC---CCEEEEeCch
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSE 94 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~---~~~~~~~~~~ 94 (539)
-|+|.|+||+||||+++.++..++ .++..++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 478999999999999999999875 3455554433
No 229
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.63 E-value=0.0012 Score=61.71 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=26.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877654
No 230
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.62 E-value=0.0014 Score=61.69 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=26.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
..+.|.||+|+||||+++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999976654
No 231
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.61 E-value=0.0023 Score=67.01 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=32.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
|+.++.-++|.|+||+|||+|+..+|... +.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56677779999999999999999998755 6788887653
No 232
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.59 E-value=0.00076 Score=67.92 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=26.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 368999999999999999999999877744
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.58 E-value=0.005 Score=57.31 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=31.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCchh
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEF 95 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~~ 95 (539)
..+..++|.|+||+||||+++.+++.+ |.+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 445668999999999999999999876 466777775544
No 234
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.58 E-value=0.004 Score=57.18 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=42.1
Q ss_pred CceEEEECCCCCcHH-HHHHHHHHh--cCCCEEEEeCc---hhhHHH---hhh-----hhHHHHHHHHHHHhCCCeEEEE
Q 009263 59 PHGVLLEGPPGCGKT-LVAKAIAGE--AGVPFYQMAGS---EFVEVL---VGV-----GSARIRDLFKRAKVNKPSVIFI 124 (539)
Q Consensus 59 ~~giLL~GppGtGKT-~la~alA~~--~~~~~~~~~~~---~~~~~~---~g~-----~~~~~~~~f~~a~~~~p~Il~i 124 (539)
.+-.++|||.|+||| .|.+++.+. .+..++.+... .+.... .|. ......+++... ....+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIlI 97 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 97 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEEE
Confidence 445789999999999 889988764 36777777643 221110 010 001112233322 23569999
Q ss_pred eCcchh
Q 009263 125 DEIDAL 130 (539)
Q Consensus 125 DEiD~l 130 (539)
||++-|
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999887
No 235
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.57 E-value=0.0013 Score=60.46 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=25.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
.|.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987654
No 236
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.55 E-value=0.0011 Score=63.96 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=28.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
+..+.|.|++|+||||+++.+|+.++.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45799999999999999999999999877653
No 237
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.55 E-value=0.0015 Score=61.66 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=25.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
-++|.|+||+||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999875543
No 238
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.54 E-value=0.0019 Score=59.09 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=26.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 92 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~---~~~~~~~~~ 92 (539)
|.|.|++|+||||+++.++..+ +.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 998876643
No 239
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.54 E-value=0.0087 Score=64.00 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=28.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHH--HHhc--CCCEEEEeCch
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAI--AGEA--GVPFYQMAGSE 94 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~al--A~~~--~~~~~~~~~~~ 94 (539)
+.++..++|.||+|+|||+|++.+ ++.. +...+++++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 456667999999999999999994 4433 44566666543
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.50 E-value=0.0015 Score=60.42 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+.|.|++|+||||+++.+++ ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 88766554
No 241
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.47 E-value=0.002 Score=61.23 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=27.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
+..+.|.||||+|||++++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568999999999999999999999876543
No 242
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.46 E-value=0.0021 Score=61.53 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 88 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~ 88 (539)
.|..++|.||||+||||+++.++..++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3567999999999999999999999987654
No 243
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.46 E-value=0.0024 Score=59.14 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
..+.-++|.||||+|||++++.++..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999999874
No 244
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.43 E-value=0.0069 Score=62.69 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=41.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCC---CEEEEeCc-hhhH------HHhhhhhHHHHHHHHHHHhCCCeEEEEeCcc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGV---PFYQMAGS-EFVE------VLVGVGSARIRDLFKRAKVNKPSVIFIDEID 128 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~---~~~~~~~~-~~~~------~~~g~~~~~~~~~f~~a~~~~p~Il~iDEiD 128 (539)
..++|.||+|+||||+++++++.+.. .++.+.-. ++.. .............+..+....|.++++.|+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 35789999999999999999998742 34333211 1100 0000001123344555666789999999863
No 245
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.40 E-value=0.0028 Score=60.93 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCC--------EEEEeCchhhH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------FYQMAGSEFVE 97 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~--------~~~~~~~~~~~ 97 (539)
.+.-|.|.|++|+|||++++.|+..++.+ +..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 34568999999999999999999999876 34566666653
No 246
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.40 E-value=0.0018 Score=59.99 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
.+.|.||+|+||||+++.+++ +|.+++ +...+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 578999999999999999998 787765 44444
No 247
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.40 E-value=0.0023 Score=59.07 Aligned_cols=30 Identities=37% Similarity=0.686 Sum_probs=27.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+.|.|++|+|||++++.++..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999887754
No 248
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.39 E-value=0.0031 Score=58.32 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=26.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCC--EEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQM 90 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~--~~~~ 90 (539)
+.-|+|.|+||+||||+++.++..++.. ++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 3468999999999999999999998763 5443
No 249
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.38 E-value=0.0041 Score=57.26 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=30.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 100 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~~~ 100 (539)
.+.|+|++||||||+++.++..+|.+++. +..+.....
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~~~~ 51 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGHEVL 51 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHHHHH
Confidence 47899999999999999999998877654 455544433
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.36 E-value=0.0025 Score=59.32 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
++.-+.|.||+|+|||++++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455688999999999999999999874
No 251
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.34 E-value=0.0028 Score=58.27 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=28.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 97 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~ 97 (539)
+..|.|.|++|+|||++++.+++. |.+++ +...+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~ 43 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAA 43 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHH
Confidence 456899999999999999999998 77765 4445443
No 252
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.33 E-value=0.019 Score=54.30 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=18.2
Q ss_pred CceEEEECCCCCcHHHHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIA 80 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA 80 (539)
++.+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999998766654
No 253
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.33 E-value=0.0091 Score=60.38 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.-+.|.||+|+|||||.+.||+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999844
No 254
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.32 E-value=0.013 Score=63.89 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.+.++++||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3468999999999999988876543
No 255
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.32 E-value=0.0036 Score=56.89 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=28.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
.+..++|.|+||+|||++++.++..+ +.++..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 45568899999999999999999877 44555555443
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.30 E-value=0.0019 Score=64.64 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=29.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
++-++|.||+|+|||+|+..||+.++.+++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999998877766543
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.30 E-value=0.0064 Score=56.43 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=24.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
..+.-+.|.||+|+|||||++.|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455688999999999999999999875
No 258
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.29 E-value=0.012 Score=63.98 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++..+.|.||+|+|||||++.+++..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4455669999999999999999999854
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0027 Score=57.59 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=22.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+.-+.|.||+|+|||||++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998763
No 260
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.28 E-value=0.0012 Score=61.23 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~ 86 (539)
.+.-|+|.|+||+||||+++.++..++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35569999999999999999999987543
No 261
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.27 E-value=0.0091 Score=67.87 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=19.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~ 81 (539)
+..++|.||+|+|||++.|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999954
No 262
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.27 E-value=0.0081 Score=65.05 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=23.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++..+.|.||+|+|||||++.+++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3455568999999999999999999855
No 263
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.27 E-value=0.0033 Score=60.50 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=26.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 88 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~ 88 (539)
+..+.|.||+|+||||+++.+|..+|.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 346889999999999999999999997655
No 264
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.27 E-value=0.0026 Score=62.73 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=29.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
.+.-++|.||+|+|||+|+..+|..++.+++..+.-
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 355688999999999999999999998777665543
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.23 E-value=0.0027 Score=58.58 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.++.-+.|.||+|+||||+++.+++..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 445678999999999999999999976
No 266
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.23 E-value=0.04 Score=57.88 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+..+..++|.||+|+|||||++.|++.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3455568899999999999999999865
No 267
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.22 E-value=0.032 Score=51.34 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.+++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999988877653
No 268
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.18 E-value=0.0015 Score=60.72 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.+.-|+|.|+||+||||+++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999764
No 269
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.17 E-value=0.0038 Score=58.35 Aligned_cols=30 Identities=37% Similarity=0.423 Sum_probs=25.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
+.-|.|.|++|+||||+++.++. +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 45689999999999999999998 7776554
No 270
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.14 E-value=0.0095 Score=61.02 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=23.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
+..+.-+.|.||+|+|||||.+.|++-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 345556899999999999999999974
No 271
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.09 E-value=0.0028 Score=58.73 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc-CCCEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFY 88 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~-~~~~~ 88 (539)
++.-+.|.|+||+||||+++.+++.+ +.+++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 34458899999999999999999987 54443
No 272
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.09 E-value=0.0045 Score=58.72 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=27.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
.+..+.|.|++|+|||++++.+++.+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 44568999999999999999999999977654
No 273
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.08 E-value=0.0037 Score=57.53 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++.-+.|.||+|+||||+++.+++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44568899999999999999999985
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.07 E-value=0.0041 Score=55.32 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||.|+|||+|++.+++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4455568899999999999999999987
No 275
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.06 E-value=0.063 Score=49.06 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=17.7
Q ss_pred CceEEEECCCCCcHHHHH-HHHHHh
Q 009263 59 PHGVLLEGPPGCGKTLVA-KAIAGE 82 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la-~alA~~ 82 (539)
.+.+++.+|+|+|||..+ ..+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 357999999999999863 333443
No 276
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.03 E-value=0.013 Score=63.48 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++.-+.|.||+|+|||||++.+++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3445568999999999999999999855
No 277
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.01 E-value=0.0048 Score=57.57 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=27.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
..+.|.|++|+|||++++.++..++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999999776543
No 278
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.99 E-value=0.0061 Score=63.18 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=28.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
.+.-++|+|+||+||||+++.++..++..+ ++...+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 345688999999999999999999987654 444443
No 279
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.97 E-value=0.024 Score=61.33 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++..+.|.||+|+|||||++.+++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568999999999999999999854
No 280
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.95 E-value=0.0043 Score=61.34 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=26.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
.-++|.||+|+|||+|+..+|..++..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 35789999999999999999999876555444
No 281
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.93 E-value=0.0039 Score=57.39 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=26.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
+++++|.||+|+|||+||..++.... +++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 56799999999999999999999876 55443
No 282
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.92 E-value=0.018 Score=61.32 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=31.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 98 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~ 98 (539)
.+.-|+|+|.||+|||++++.++..+ +.+...++..++...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 34568999999999999999999988 455566676665544
No 283
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.92 E-value=0.0069 Score=64.86 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+..+.|.||+|+|||||++++++..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999854
No 284
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.91 E-value=0.0038 Score=57.92 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.+.-+.|.||+|+||||+++.+++.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999877
No 285
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.91 E-value=0.0081 Score=55.46 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=29.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
..+.-+.|.||+|+||||+++.++..+ +.+++..+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 345568899999999999999999875 66666665443
No 286
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.89 E-value=0.0038 Score=66.41 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=46.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC--CCEEEEeCch-hhHH---H--------hhhhhHHHHHHHHHHHhCCCeEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSE-FVEV---L--------VGVGSARIRDLFKRAKVNKPSVIF 123 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~--~~~~~~~~~~-~~~~---~--------~g~~~~~~~~~f~~a~~~~p~Il~ 123 (539)
.+.+++|.||+|+||||+++++++... ...+.+.... +.-. + .+.....+...+..+..+.|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 455799999999999999999998773 2345544322 1100 0 011112345566667778999999
Q ss_pred EeCcc
Q 009263 124 IDEID 128 (539)
Q Consensus 124 iDEiD 128 (539)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99984
No 287
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.88 E-value=0.0043 Score=61.05 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=23.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc-CCC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA-GVP 86 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~-~~~ 86 (539)
|.-++|.|+||+||||+++.++... +.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~ 30 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcE
Confidence 3468999999999999999999964 543
No 288
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.88 E-value=0.02 Score=57.17 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.+|.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356668999999999999999999865
No 289
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.87 E-value=0.0042 Score=62.28 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=26.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
.-++|.||+|+|||++++.||..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999986554443
No 290
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.86 E-value=0.016 Score=68.70 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
++++.-+.|+||+|+|||||++.+.+...
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34555699999999999999999998663
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.86 E-value=0.0056 Score=55.74 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 95 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~ 95 (539)
.++|.||+|+||||+++.+++..+. .+.++..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244554443
No 292
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.85 E-value=0.015 Score=57.90 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=29.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
.++..++++||+|+||||++..+|..+ +..++.+++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456679999999999999999998865 5566666543
No 293
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.84 E-value=0.0046 Score=57.09 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+++.+.|.||+|+|||||++.+++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 445689999999999999999998653
No 294
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.84 E-value=0.0049 Score=57.84 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.++.-+.|.||+|+|||||++.+++..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344558999999999999999999976
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.83 E-value=0.005 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+-+.|.||+|+||||+++.+++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998763
No 296
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.82 E-value=0.0054 Score=60.01 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=27.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 96 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~ 96 (539)
+.-|.|.|++|+||||+++.++ .+|.+++ ++..+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHHH
Confidence 4458999999999999999999 5787654 444443
No 297
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.79 E-value=0.03 Score=62.77 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~ 82 (539)
.+..++|+||+|+|||++.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456889999999999999999874
No 298
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.79 E-value=0.013 Score=63.45 Aligned_cols=38 Identities=34% Similarity=0.561 Sum_probs=32.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 95 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~ 95 (539)
.+..|+|.|+||+||||++++++..+ +.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34568999999999999999999998 999998875444
No 299
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.78 E-value=0.036 Score=54.51 Aligned_cols=73 Identities=25% Similarity=0.260 Sum_probs=45.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhH-------HH---hh---------hhh-HHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-------VL---VG---------VGS-ARIRDLFKRA 114 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~-------~~---~g---------~~~-~~~~~~f~~a 114 (539)
.+..+.++|++|+|||+++..+|..+ +..+..+++.-... .+ .+ ... ...+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45568889999999999999999865 55666555432110 00 00 011 1224556666
Q ss_pred HhCCCeEEEEeCcchh
Q 009263 115 KVNKPSVIFIDEIDAL 130 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~l 130 (539)
....+.+|+||+.-.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567889999997543
No 300
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.77 E-value=0.022 Score=61.73 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++..+.|.||+|+|||||++.+++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3455568999999999999999999854
No 301
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.74 E-value=0.053 Score=59.41 Aligned_cols=34 Identities=35% Similarity=0.495 Sum_probs=24.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 94 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~ 94 (539)
-.||+||||||||+++-.+...+ +.+++.+..+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 46999999999998766554433 66677766654
No 302
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.69 E-value=0.014 Score=60.77 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=29.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
.+..++++|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45679999999999999999999876 4566666654
No 303
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.68 E-value=0.0067 Score=59.97 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=26.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.++++..+.|+||+|+|||||++.|++...
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 456666799999999999999999999873
No 304
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.64 E-value=0.067 Score=55.28 Aligned_cols=72 Identities=22% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhHH-------Hh---h-------h--h-hHHHHHHHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-------LV---G-------V--G-SARIRDLFKRA 114 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~~-------~~---g-------~--~-~~~~~~~f~~a 114 (539)
++..+++.||+|+||||++..+|..+ +..+..+++.-+... +. + . . ....+..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999866 556666655322110 00 0 0 0 11224556666
Q ss_pred HhCCCeEEEEeCcch
Q 009263 115 KVNKPSVIFIDEIDA 129 (539)
Q Consensus 115 ~~~~p~Il~iDEiD~ 129 (539)
+....++++||=.-.
T Consensus 177 ~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 177 RLEARDLILVDTAGR 191 (425)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HHCCCCEEEEcCCCc
Confidence 556667999986543
No 305
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.62 E-value=0.16 Score=46.92 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=33.4
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
.+|+++.-.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||..+-..+-.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688876556665555441 122222222111 112356999999999999876655543
No 306
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.62 E-value=0.0075 Score=55.85 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=27.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
.|.|.||+|||||++++.+|..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999883
No 307
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.61 E-value=0.0072 Score=56.05 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+..+..+.|.||+|+|||||++++++...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34555688999999999999999999874
No 308
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.61 E-value=0.0071 Score=54.93 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=28.3
Q ss_pred EEEECCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 94 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~~~~~~~~~~~~ 94 (539)
+|++|++|+|||++|..++.. +.|.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888887644
No 309
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.59 E-value=0.0087 Score=55.23 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.++-+.|.||+|+|||+|+++|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999998764
No 310
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.59 E-value=0.015 Score=57.44 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..++..+.|.||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456668999999999999999999875
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.58 E-value=0.0052 Score=58.03 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=17.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHH-Hhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIA-GEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA-~~~ 83 (539)
.++.-+.|.||+|+||||+++.++ +..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445568899999999999999999 765
No 312
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.57 E-value=0.0075 Score=57.55 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=24.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~ 86 (539)
.+.-+.|.||+|+||||+++.+++.+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34457899999999999999999987643
No 313
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.54 E-value=0.032 Score=58.00 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=47.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhHHH----------hh----------hhhHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVL----------VG----------VGSARIRDLFK 112 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~~~~~~----------~g----------~~~~~~~~~f~ 112 (539)
.+|+.++++|++|+||||++-.+|..+ |..+..+++.-+.... .+ .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356779999999999999999998654 6778777766432110 00 01122245566
Q ss_pred HHHhCCCeEEEEeCcch
Q 009263 113 RAKVNKPSVIFIDEIDA 129 (539)
Q Consensus 113 ~a~~~~p~Il~iDEiD~ 129 (539)
.+......+++||=...
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 66655677999987543
No 314
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.53 E-value=0.0066 Score=62.10 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=27.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 91 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~~ 91 (539)
+.-++|.||+|+|||+|+..+|..++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 346889999999999999999999987655443
No 315
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.52 E-value=0.026 Score=55.58 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=46.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhH-------HHh---h----------hhhHHHHHHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-------VLV---G----------VGSARIRDLFKRAK 115 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~~-------~~~---g----------~~~~~~~~~f~~a~ 115 (539)
+..+++.|++|+|||+++..+|..+ +..+..+++.-+.. .+. + .....+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5568889999999999999999766 66677666542211 000 0 01112345566665
Q ss_pred hCCCeEEEEeCcchh
Q 009263 116 VNKPSVIFIDEIDAL 130 (539)
Q Consensus 116 ~~~p~Il~iDEiD~l 130 (539)
.....+++||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 566789999886443
No 316
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.51 E-value=0.0087 Score=56.25 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
..+.-+.|.||+|+|||||++.+++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4455688999999999999999999764
No 317
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.49 E-value=0.11 Score=48.21 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=33.3
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHH-HHHHHH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLV-AKAIAG 81 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l-a~alA~ 81 (539)
+..+|+++.-.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||.. +-.+..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHH
Confidence 346788886556665555442 122222221110 11235799999999999986 334444
No 318
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.48 E-value=0.031 Score=62.58 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=19.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~ 82 (539)
...+++.||+|+|||+++..++..
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999987777554
No 319
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.43 E-value=0.047 Score=57.72 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=28.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 92 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~ 92 (539)
..+..|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346679999999999999999999765 666666665
No 320
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.31 E-value=0.019 Score=58.24 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=45.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC--CCEEEEeCc-hhh-----HH--Hh-------hh-hhHHHHHHHHHHHhCC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGS-EFV-----EV--LV-------GV-GSARIRDLFKRAKVNK 118 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~~~~~-~~~-----~~--~~-------g~-~~~~~~~~f~~a~~~~ 118 (539)
.++..++|.||+|+|||||++++++... .-.+.+... ++. .. ++ +. ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 4556799999999999999999998763 223443321 110 00 00 00 1223566777777788
Q ss_pred CeEEEEeCcc
Q 009263 119 PSVIFIDEID 128 (539)
Q Consensus 119 p~Il~iDEiD 128 (539)
|..++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 9999999975
No 321
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.28 E-value=0.021 Score=57.84 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..++..+.|.||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456679999999999999999999875
No 322
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.24 E-value=0.011 Score=58.11 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=24.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
..+.-+.|.||+|+|||||++.|++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456688999999999999999998775
No 323
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.23 E-value=0.016 Score=53.12 Aligned_cols=71 Identities=18% Similarity=0.117 Sum_probs=41.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh---H----HHhhhh-----hHHHHHHHHHHHhCCCeEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV---E----VLVGVG-----SARIRDLFKRAKVNKPSVIF 123 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~---~----~~~g~~-----~~~~~~~f~~a~~~~p~Il~ 123 (539)
.+-.+++||+|+|||+.+-.++.++ +..++.+....-. . ...|.. .....++++.+. ....+|+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvVi 86 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIA 86 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEE
Confidence 3457889999999999988888765 6666555311100 0 001100 011124444433 2357999
Q ss_pred EeCcchh
Q 009263 124 IDEIDAL 130 (539)
Q Consensus 124 iDEiD~l 130 (539)
|||++.+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999875
No 324
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.21 E-value=0.11 Score=52.40 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=25.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 91 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~ 91 (539)
..-+.|+|+||+|||+++.+++..+ +..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4468899999999999999998765 55544443
No 325
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.18 E-value=0.068 Score=61.46 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.7
Q ss_pred CceEEEECCCCCcHHHHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIA 80 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA 80 (539)
+..++|+||+|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4568999999999999999994
No 326
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.15 E-value=0.11 Score=52.83 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=22.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.-++|.||+|+|||+|++.+++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345569999999999999999998854
No 327
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.09 E-value=0.015 Score=54.84 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=26.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
-+-|.||||+||||+++.|+..++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 367899999999999999999999887643
No 328
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.07 E-value=0.01 Score=58.33 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=26.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC---CCEEEEeCchhh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFV 96 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~---~~~~~~~~~~~~ 96 (539)
.-|.|.||+|+||||+++.++..++ ..+..++..++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4588999999999999999998765 445666666654
No 329
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.05 E-value=0.022 Score=53.75 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=26.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC--CCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~--~~~~~~ 90 (539)
.+.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 344588999999999999999999886 455543
No 330
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.04 E-value=0.055 Score=60.23 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~ 82 (539)
+..++|.||+|+|||++.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 345889999999999999999874
No 331
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.01 E-value=0.0079 Score=57.20 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+.++..+.|.||+|+|||||++.+++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34555689999999999999999998654
No 332
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.01 E-value=0.1 Score=49.07 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=31.0
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAK 77 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~ 77 (539)
+..+|+++.-.+...+.|... .+..+..++... +...+.+++.+|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 346789986555555555431 122232222111 1123579999999999997643
No 333
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.00 E-value=0.016 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~ 82 (539)
...|+||.|+||+|||++|.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3568999999999999999999884
No 334
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.97 E-value=0.18 Score=47.28 Aligned_cols=54 Identities=26% Similarity=0.211 Sum_probs=30.5
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHH
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAK 77 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~ 77 (539)
..+|+++.-.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 35688876555665555431 122222221110 1124679999999999998543
No 335
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.0088 Score=64.93 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhc
Q 009263 62 VLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 62 iLL~GppGtGKT~la~alA~~~ 83 (539)
+.|.||+|+|||||++.+++..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999999854
No 336
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.91 E-value=0.0087 Score=56.97 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455668999999999999999999854
No 337
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.90 E-value=0.02 Score=62.20 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHhc-------------------CCCEEEEeCchhhHHH-hhh----------
Q 009263 53 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------------------GVPFYQMAGSEFVEVL-VGV---------- 102 (539)
Q Consensus 53 ~~g~~~~~giLL~GppGtGKT~la~alA~~~-------------------~~~~~~~~~~~~~~~~-~g~---------- 102 (539)
.+.+..+.-+.|.||+|+|||||++.+++.. .......+..++.... ...
T Consensus 376 ~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 455 (607)
T 3bk7_A 376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455 (607)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH
Q ss_pred ------------------hhHHHHHHHHHHHhCCCeEEEEeCcchhhhhhcCCcCCchhhhhhhhhhHHHHHHHHHHHHh
Q 009263 103 ------------------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 164 (539)
Q Consensus 103 ------------------~~~~~~~~f~~a~~~~p~Il~iDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 164 (539)
+.++.+-.+..|....|.+|++||- ...-.......++..+
T Consensus 456 l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP---------------------t~~LD~~~~~~l~~~l 514 (607)
T 3bk7_A 456 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP---------------------SAYLDVEQRLAVSRAI 514 (607)
T ss_dssp HHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT---------------------TTTCCHHHHHHHHHHH
T ss_pred HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC---------------------ccCCCHHHHHHHHHHH
Q ss_pred cCCCCCCcEEEEEecCC
Q 009263 165 DGFDTGKGVIFLAATNR 181 (539)
Q Consensus 165 d~~~~~~~vivIaatn~ 181 (539)
..+....+..||.+|++
T Consensus 515 ~~l~~~~g~tvi~vsHd 531 (607)
T 3bk7_A 515 RHLMEKNEKTALVVEHD 531 (607)
T ss_dssp HHHHHHTTCEEEEECSC
T ss_pred HHHHHhCCCEEEEEeCC
No 338
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.076 Score=57.56 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++.-+.|.||+|+|||||.+.|++..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44568899999999999999999854
No 339
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.81 E-value=0.11 Score=51.72 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=37.6
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC----CCCCceEEEECCCCCcHHHHHHHHHHhc-----CCCEEEEeC
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMG----IKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 92 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g----~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~~~~ 92 (539)
.+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||..+-..+-.. +...+.+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 4677775555665555542 122222111111 1123589999999999999866554433 445555544
No 340
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.80 E-value=0.037 Score=65.53 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++.-+.|+||+|+|||||++.+++..
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455569999999999999999999865
No 341
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.80 E-value=0.0074 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~ 84 (539)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.77 E-value=0.032 Score=55.53 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=28.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCC-----CEEEEeCchh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGV-----PFYQMAGSEF 95 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~-----~~~~~~~~~~ 95 (539)
.|.-+.|.||+|+||||+++.++..++. .+..++...+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4456889999999999999999998752 3455555443
No 343
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.76 E-value=0.09 Score=52.68 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.-+.|.||||+|||||.+++++.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344458899999999999999999764
No 344
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.75 E-value=0.051 Score=58.53 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=32.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcC----CCEEEEeCchhhH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAGSEFVE 97 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~----~~~~~~~~~~~~~ 97 (539)
+..|+|.|+||+||||++++++..++ .+++.++...+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 34588999999999999999999886 7888887665543
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.75 E-value=0.018 Score=52.72 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.+.|.||+|+|||||++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.75 E-value=0.019 Score=57.01 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
..+.-+.|.||+|+|||||++.|++.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4455688999999999999999999763
No 347
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.71 E-value=0.011 Score=57.30 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+.++..+.|.||+|+|||||++.+++-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34555688999999999999999998654
No 348
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.71 E-value=0.017 Score=54.34 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=27.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEE
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 89 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~ 89 (539)
..|.|.|++|||||++++.+|..++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358899999999999999999999998764
No 349
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.71 E-value=0.12 Score=50.82 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 93 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~ 93 (539)
+.+++.+|+|+|||..+-..+-+.+...+.+...
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~ 65 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPT 65 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCC
Confidence 5799999999999998777766667666666543
No 350
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.68 E-value=0.012 Score=56.01 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+.+ ..+.|.||+|+|||||.+.+++-..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445 6788999999999999999998653
No 351
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.65 E-value=0.19 Score=46.82 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCCcCcCcccCcH-HHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHH
Q 009263 20 STGVKFSDVAGID-EAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAK 77 (539)
Q Consensus 20 ~~~~~~~dv~G~~-~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~ 77 (539)
.+..+|++..+.. ...+.|.+. .+..+..++... +...+.+++.+|+|+|||..+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 4556788855544 333333321 122332222111 1134679999999999997543
No 352
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.64 E-value=0.011 Score=56.54 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568999999999999999999865
No 353
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.64 E-value=0.023 Score=51.33 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..-+.|.|++|+|||+|++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999998864
No 354
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.63 E-value=0.3 Score=44.40 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=15.8
Q ss_pred CceEEEECCCCCcHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAK 77 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~ 77 (539)
.+.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3579999999999997544
No 355
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.58 E-value=0.01 Score=55.58 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=23.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++.-+.|.||+|+|||||++.+++..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999999865
No 356
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.56 E-value=0.011 Score=57.00 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=23.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.++..+.|.||+|+|||||.+.+++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445588999999999999999998663
No 357
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.55 E-value=0.036 Score=54.85 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
..+.-+.|.||+|+|||||++.|++.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445588999999999999999999765
No 358
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.54 E-value=0.014 Score=56.49 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455568899999999999999999863
No 359
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.53 E-value=0.053 Score=64.38 Aligned_cols=28 Identities=32% Similarity=0.636 Sum_probs=23.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++++..+-|+||+|+|||||++.+.+-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 3445568999999999999999998844
No 360
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.038 Score=49.87 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 31 IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 31 ~~~~k~~L~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.....+.+.+++....... ......+++.|++|+|||+|+.++.+..
T Consensus 26 ~~~l~~~l~~~~~~~~~~~------~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGG------GSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCCC------CCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455555555444322221 1344569999999999999999998854
No 361
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.52 E-value=0.091 Score=48.85 Aligned_cols=31 Identities=10% Similarity=-0.125 Sum_probs=24.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~---~~~~~~~~ 91 (539)
-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999888887655 66766664
No 362
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.51 E-value=0.012 Score=56.73 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=24.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+.++..+.|.||+|+|||||++.+++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 44556689999999999999999998653
No 363
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.51 E-value=0.089 Score=55.23 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=29.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC---CCEEEEeCchh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEF 95 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~---~~~~~~~~~~~ 95 (539)
.+..|+|+|.||+|||++++.++..++ .+...++..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~ 78 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 78 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchh
Confidence 345689999999999999999999864 45555554443
No 364
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.50 E-value=0.046 Score=56.99 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
++.++|+||+|+|||+|++.++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3458999999999999999987654
No 365
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.49 E-value=0.012 Score=55.79 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||.+.+++..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455668899999999999999999865
No 366
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.48 E-value=0.14 Score=56.76 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCcHHHHHH-HHHHh---cCCCEEEEeC
Q 009263 58 PPHGVLLEGPPGCGKTLVAK-AIAGE---AGVPFYQMAG 92 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~-alA~~---~~~~~~~~~~ 92 (539)
..+.++++||+|+|||..+. ++... .+...+++..
T Consensus 38 ~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 36789999999999998873 33322 2445555543
No 367
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.47 E-value=0.013 Score=56.11 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=23.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
+.++..+.|.||+|+|||||++.+++.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345556889999999999999999985
No 368
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.46 E-value=0.023 Score=56.13 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
.+..+.|.||+|+||||+++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35568899999999999999999876
No 369
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.11 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.|+|.|++|+|||+|++++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 370
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.43 E-value=0.012 Score=56.42 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+.++..+.|.||+|+|||||++.+++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34555688999999999999999998653
No 371
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.42 E-value=0.056 Score=57.90 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=31.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC----CCEEEEeCchhhH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAGSEFVE 97 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~----~~~~~~~~~~~~~ 97 (539)
..+..+.|.|++|+||||++++|++.++ ..+..+++..+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 3455689999999999999999999884 3555677766543
No 372
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.41 E-value=0.012 Score=56.08 Aligned_cols=28 Identities=39% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.++..+.|.||+|+|||||.+.+++...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4455688999999999999999998653
No 373
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.40 E-value=0.079 Score=58.62 Aligned_cols=35 Identities=31% Similarity=0.336 Sum_probs=24.0
Q ss_pred CceEEEECCCCCcHHHHHHHHH-Hhc--CCCEEEEeCc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIA-GEA--GVPFYQMAGS 93 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA-~~~--~~~~~~~~~~ 93 (539)
.+.+++.||+|+|||+.+-..+ ..+ +...+++...
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~ 77 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPL 77 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 5689999999999999874333 222 4555555443
No 374
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.37 E-value=0.013 Score=56.29 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=24.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+.++..+.|.||+|+|||||.+.+++...
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34555688999999999999999998764
No 375
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.36 E-value=0.024 Score=49.64 Aligned_cols=21 Identities=48% Similarity=0.839 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 009263 61 GVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~ 81 (539)
-+++.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 376
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.35 E-value=0.063 Score=61.08 Aligned_cols=25 Identities=40% Similarity=0.679 Sum_probs=21.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~ 81 (539)
..+..+.|.||+|+|||||++.|++
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445589999999999999999995
No 377
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.35 E-value=0.18 Score=48.41 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.3
Q ss_pred ceEEEECCCCCcHHHHHH
Q 009263 60 HGVLLEGPPGCGKTLVAK 77 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~ 77 (539)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 568999999999998643
No 378
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.35 E-value=0.3 Score=49.10 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=36.8
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHHHHHHhc------CCCEEEEeCc
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAKAIAGEA------GVPFYQMAGS 93 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~~~~~ 93 (539)
.+|+++.-.+.+.+.|.+. .+..+..++... +...+.+++.+|+|+|||..+-..+-.. +..++.+...
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 4577765555555555442 122222221111 1124679999999999998765444332 3355555443
No 379
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.34 E-value=0.014 Score=56.49 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++..+.|.||+|+|||||++.+++-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455568899999999999999999865
No 380
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.30 E-value=0.2 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.3
Q ss_pred CceEEEECCCCCcHHHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKAI 79 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~al 79 (539)
++.+++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 478999999999999865544
No 381
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.28 E-value=0.34 Score=45.98 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=21.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+..|+|.|.||+|||+|+.++.+..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3459999999999999999997643
No 382
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.27 E-value=0.021 Score=53.16 Aligned_cols=24 Identities=42% Similarity=0.416 Sum_probs=21.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~ 82 (539)
+..+.|.||+|+|||||++.+++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999975
No 383
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.23 E-value=0.12 Score=55.20 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=21.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+.|.||+|+|||||++.+++..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 347899999999999999999854
No 384
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.23 E-value=0.014 Score=56.99 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+.++..+.|.||+|+|||||++.+++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34555688999999999999999998764
No 385
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.19 E-value=0.12 Score=53.58 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 92 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~~~ 92 (539)
..+-.++.|+||||||++...++.. .+.+.++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTp 192 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF--EEDLILVP 192 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT--TTCEEEES
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc--CCeEEEeC
Confidence 3345789999999999999888753 33444443
No 386
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.19 E-value=0.031 Score=50.10 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=25.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 91 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~~ 91 (539)
..+.|.|++|+|||+++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999875 45554443
No 387
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.18 E-value=0.014 Score=56.05 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
+.++..+.|.||+|+|||||.+.+++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34555688999999999999999998653
No 388
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.12 E-value=0.03 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~ 84 (539)
-.+|+||+|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999998775
No 389
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.08 E-value=0.13 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999888754
No 390
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.07 E-value=0.31 Score=45.81 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=15.4
Q ss_pred CceEEEECCCCCcHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVA 76 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la 76 (539)
.+.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 457999999999999863
No 391
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.02 E-value=0.15 Score=52.71 Aligned_cols=33 Identities=36% Similarity=0.431 Sum_probs=26.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 93 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~ 93 (539)
++++.+|+|+|||..+-.++... +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 78999999999999988886654 6667666654
No 392
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.94 E-value=0.036 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
|.-|.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44689999999999999999999984
No 393
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.93 E-value=0.44 Score=45.14 Aligned_cols=53 Identities=19% Similarity=0.163 Sum_probs=28.8
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHH
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAK 77 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~ 77 (539)
.+|+++.-.+...+.|... .+..+..++... +...+.+++.+|+|+|||..+-
T Consensus 43 ~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 4588875444444444321 122222221111 1134679999999999998643
No 394
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.92 E-value=0.15 Score=47.75 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVA 76 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 76 (539)
+..+|+++.-.+...+.|.+. .+..+..++... +..++.+++.+|+|+|||...
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 446788875555555555431 122222221111 112467999999999999863
No 395
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.88 E-value=0.096 Score=54.73 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=31.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCc-hhhHH
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-EFVEV 98 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~~~~~~~~~~-~~~~~ 98 (539)
+.++|++|+|+|||..+-.++...+.+++.+... .+...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q 148 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQ 148 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHH
Confidence 3589999999999999999988888888887766 44433
No 396
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.88 E-value=0.13 Score=51.45 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+..+.|.|+||+|||+++.+++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999998764
No 397
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.87 E-value=0.2 Score=55.35 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=24.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHH-Hh---cCCCEEEEeC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIA-GE---AGVPFYQMAG 92 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA-~~---~~~~~~~~~~ 92 (539)
...+.+++.||+|+|||+.+-..+ .. .+...+++..
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 446789999999999999884433 21 2445555543
No 398
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.80 E-value=0.017 Score=55.60 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~ 84 (539)
.+.-|.|.|++|+||||+++.|+..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445688999999999999999999983
No 399
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.77 E-value=0.48 Score=44.53 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHH
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAK 77 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~ 77 (539)
.+..+|+++.-.+...+.+.+. .+..+..++... +...+.+++.+|+|+|||...-
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 3456888875555555555431 122222221110 1123579999999999998643
No 400
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.76 E-value=0.33 Score=51.28 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=24.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc--------CCCEEEEeCc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA--------GVPFYQMAGS 93 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~--------~~~~~~~~~~ 93 (539)
+.+++.+|+|+|||..+-..+... +..++.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 468999999999998866665443 5566666554
No 401
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.76 E-value=0.26 Score=46.33 Aligned_cols=32 Identities=13% Similarity=0.008 Sum_probs=22.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 91 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~~ 91 (539)
.-.+++||.|+|||+.+-..+..+ +..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 447789999999997766665543 55555543
No 402
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.61 E-value=0.023 Score=54.91 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=22.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+..+.|.||+|+|||||.+.+++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4558899999999999999999876
No 403
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.60 E-value=0.38 Score=50.94 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=24.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc--------CCCEEEEeCc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA--------GVPFYQMAGS 93 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~--------~~~~~~~~~~ 93 (539)
+.+++.+|+|+|||..+-..+... +..++.+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 468999999999998876665443 5556666554
No 404
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.57 E-value=0.073 Score=49.61 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=26.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 91 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~ 91 (539)
+.-|.|.|++|+||||+++.++..+ +.+++...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 3457889999999999999999877 45665543
No 405
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.53 E-value=0.022 Score=55.88 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+.++.-+.|.||+|+|||||++.+++..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445558899999999999999999865
No 406
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.52 E-value=0.035 Score=53.87 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.+.|.||+|+|||||.+.|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999876
No 407
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.48 E-value=0.041 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
-++|.|++|+|||+|++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 408
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.45 E-value=0.038 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
-+.|.|++|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999864
No 409
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.44 E-value=0.37 Score=48.75 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHHHHH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAKAIA 80 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~alA 80 (539)
...+|+++.-.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||..+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 345788886556665555431 122222111110 0123569999999999998654443
No 410
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.42 E-value=0.1 Score=61.66 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+++..+-|+||+|+|||+|++.+++..
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 345558899999999999999999843
No 411
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.42 E-value=0.27 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.|+|.|++|+|||+|++++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 412
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.16 Score=59.05 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=24.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 93 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~ 93 (539)
+.+|++||+|+|||..+-..+... +...+++...
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 579999999999998876554433 5555665543
No 413
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.40 E-value=0.29 Score=52.61 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.5
Q ss_pred CCceEEEECCCCCcHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLV 75 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~l 75 (539)
..+.+++.+|+|+|||..
T Consensus 59 ~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEEcCCCcHHHHH
Confidence 356799999999999984
No 414
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.38 E-value=0.35 Score=49.04 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.3
Q ss_pred CceEEEECCCCCcHHHHHHH
Q 009263 59 PHGVLLEGPPGCGKTLVAKA 78 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~a 78 (539)
.+.+++.+|+|+|||..+-.
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHH
Confidence 45699999999999987443
No 415
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.37 E-value=0.42 Score=44.08 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.4
Q ss_pred ceEEEECCCCCcHHHHHH
Q 009263 60 HGVLLEGPPGCGKTLVAK 77 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~ 77 (539)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 578999999999998643
No 416
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.36 E-value=0.07 Score=50.25 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=23.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc-------CCCEEEEe
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMA 91 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~-------~~~~~~~~ 91 (539)
+.-|.|.||+|+||||+++.++..+ +.+++...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 3458889999999999999999877 66665543
No 417
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.36 E-value=0.25 Score=49.80 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=38.3
Q ss_pred CCCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHH-HHHHhc-----CCCEEEE
Q 009263 20 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAK-AIAGEA-----GVPFYQM 90 (539)
Q Consensus 20 ~~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~-alA~~~-----~~~~~~~ 90 (539)
.+..+|+++.-.+...+.|... .+..+..++... +...+.+++.+|+|+|||..+- .+...+ +...+.+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 95 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 95 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 3456788886555665555442 122222221111 1123569999999999998643 333332 3355555
Q ss_pred eCc
Q 009263 91 AGS 93 (539)
Q Consensus 91 ~~~ 93 (539)
...
T Consensus 96 ~P~ 98 (394)
T 1fuu_A 96 APT 98 (394)
T ss_dssp CSS
T ss_pred cCC
Confidence 443
No 418
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.35 E-value=0.028 Score=50.59 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcC
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~ 84 (539)
.+.|.||+|+|||||++.+++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998763
No 419
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.34 E-value=0.045 Score=55.43 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVP 86 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~ 86 (539)
..-+.|.||+|+|||||++.|++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987643
No 420
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.25 E-value=0.06 Score=50.03 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=28.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHhcCCCEEEEeCchhhHH
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 98 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~~~~~~~~~~~~~~~~ 98 (539)
.|-|+|..|||||++++.++. +|.|++. +..+...
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vid--aD~ia~~ 45 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVD--TDLIAHR 45 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE--HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEE--CcHHHHH
Confidence 588999999999999999998 8887764 4444433
No 421
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.24 E-value=0.16 Score=54.28 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=30.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 96 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~~~~~~~~~~~ 96 (539)
+..++|+|++|+|||++++.++..+ |.++..++...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 4568899999999999999999876 4567777765544
No 422
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.23 E-value=0.057 Score=57.13 Aligned_cols=27 Identities=7% Similarity=0.033 Sum_probs=24.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCC
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGV 85 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~ 85 (539)
+..|+|.|.+|+||||++++||..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999974
No 423
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.19 E-value=0.089 Score=49.14 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=26.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
+.-|.|.|++|+||||+++.++..++.+...+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 45688999999999999999999998654433
No 424
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=93.14 E-value=0.3 Score=47.89 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=30.6
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhh-----hcCCCCCceEEEECCCCCcHHHHH
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFD-----KMGIKPPHGVLLEGPPGCGKTLVA 76 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~-----~~g~~~~~giLL~GppGtGKT~la 76 (539)
..+|+++.-.+...+.|... .+..+..++ .+-..+++.+++++|+|||||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 35788876555555555431 122222211 111123578999999999999753
No 425
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.12 E-value=0.39 Score=48.75 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHHHHHHH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAKAIA 80 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~alA 80 (539)
+..+|+++.-.+...+.|... .+..+..++... +...+.+++.+|+|+|||..+-..+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 345788876555565555432 122222221111 1123579999999999997655443
No 426
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.08 E-value=0.34 Score=50.15 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=22.1
Q ss_pred ceEEEECCCCCcHHHHH-HHHHH---hcCCCEEEEeC
Q 009263 60 HGVLLEGPPGCGKTLVA-KAIAG---EAGVPFYQMAG 92 (539)
Q Consensus 60 ~giLL~GppGtGKT~la-~alA~---~~~~~~~~~~~ 92 (539)
+.+++.||+|+|||..+ -++.. ..+...+.+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 57899999999999975 44442 23444555544
No 427
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.08 E-value=0.39 Score=43.89 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=21.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
...+++.|++|+|||+|+.++.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998743
No 428
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.07 E-value=0.085 Score=48.81 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhcC
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEAG 84 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~~ 84 (539)
..+++.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999998763
No 429
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.06 E-value=0.33 Score=45.89 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred ceEEEECCCCCcHHHHHH
Q 009263 60 HGVLLEGPPGCGKTLVAK 77 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~ 77 (539)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998543
No 430
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.00 E-value=0.057 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.+++.|++|+|||+|++++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 431
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.98 E-value=0.18 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..-+.|.|+||+|||||.+++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999999854
No 432
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.90 E-value=0.07 Score=49.24 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=22.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
...++|.|++|+|||+|+.++.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4469999999999999999999865
No 433
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.75 E-value=0.96 Score=48.19 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.5
Q ss_pred CCceEEEECCCCCcHHHH
Q 009263 58 PPHGVLLEGPPGCGKTLV 75 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~l 75 (539)
..+.+++.+|+|+|||..
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 356899999999999984
No 434
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.72 E-value=0.061 Score=46.92 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~ 82 (539)
-.+++.|++|+|||+|++++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 435
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.70 E-value=0.37 Score=44.47 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc--CCCEEEEe
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA--GVPFYQMA 91 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~--~~~~~~~~ 91 (539)
=|.|-|+.|+||||+++.++..+ +.+++...
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 36788999999999999999987 55666543
No 436
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.64 E-value=0.05 Score=56.97 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 56 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 56 ~~~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
+..+.-+.|.||+|+|||||+|.|++..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4455569999999999999999999864
No 437
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.62 E-value=0.07 Score=50.18 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCCCEEEE
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 90 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~~ 90 (539)
.+.-+.|.||.|+||||+++.+++. +..+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 3445889999999999999999987 4444433
No 438
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.60 E-value=0.069 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.+++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.57 E-value=0.065 Score=47.18 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999863
No 440
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.55 E-value=0.066 Score=58.39 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCch
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSE 94 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~~ 94 (539)
.+++.||||||||+++..++..+ +.+++.+..+.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 234 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence 57899999999999888776653 44566655543
No 441
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.49 E-value=0.057 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
-++|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 442
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.49 E-value=0.057 Score=55.72 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.7
Q ss_pred CCCce--EEEECCCCCcHHHHHHHHHHh
Q 009263 57 KPPHG--VLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 57 ~~~~g--iLL~GppGtGKT~la~alA~~ 82 (539)
..+.. +.|.||+|+|||||+++|++.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34445 789999999999999999986
No 443
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.48 E-value=0.075 Score=46.45 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
-.+|+||.|+|||++..||.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997654
No 444
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.46 E-value=0.074 Score=50.43 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=25.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc---CCC-EEEE
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA---GVP-FYQM 90 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~---~~~-~~~~ 90 (539)
+.-|.|.|++|+||||+++.++..+ +.+ ++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4568899999999999999999876 555 4433
No 445
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.37 E-value=0.076 Score=46.34 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.+++.|++|+|||+|++++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 446
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.36 E-value=0.22 Score=45.38 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.|+|.|++|+|||+|++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5999999999999999999864
No 447
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.36 E-value=0.077 Score=46.34 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
-.+++.|++|+|||+|++++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 448
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.35 E-value=0.17 Score=45.20 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~ 82 (539)
..-+++.|++|+|||+|++++.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345999999999999999999864
No 449
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.33 E-value=0.077 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+++.|++|+|||+|++++.+.-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998743
No 450
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.31 E-value=0.069 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.+++.|++|+|||+|++++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 451
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.28 E-value=0.13 Score=53.50 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=25.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCCE
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF 87 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~~ 87 (539)
..+.-+.|.||+|+|||+|++.|++......
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 3445589999999999999999999886543
No 452
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.24 E-value=0.082 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~ 82 (539)
-.+++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 453
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.24 E-value=0.081 Score=46.70 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+++.|++|+|||+|++++.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 454
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.23 E-value=0.092 Score=49.30 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhcCC
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEAGV 85 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~~~ 85 (539)
.+.-|.|.|++|+|||++++.+++.++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445788899999999999999987643
No 455
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.19 E-value=0.68 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.+.|.|+||+|||+|.+++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 38899999999999999998643
No 456
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.18 E-value=0.11 Score=52.27 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=25.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHhcCCC
Q 009263 57 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 86 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la~alA~~~~~~ 86 (539)
..+.-+.|.||+|+|||+|.+.|++.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344568999999999999999999987644
No 457
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.17 E-value=0.079 Score=46.61 Aligned_cols=23 Identities=48% Similarity=0.693 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~ 82 (539)
-.+++.|++|+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999999764
No 458
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.16 E-value=0.1 Score=45.65 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~ 82 (539)
....+++.|++|+|||+|+.++.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999764
No 459
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.15 E-value=0.71 Score=48.12 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=31.6
Q ss_pred cCcCcccCcHHHHHHHHHHHHHhcChhhhh-----hcCCCCCceEEEECCCCCcHHHHH-HHHHH
Q 009263 23 VKFSDVAGIDEAVEELQELVRYLKNPELFD-----KMGIKPPHGVLLEGPPGCGKTLVA-KAIAG 81 (539)
Q Consensus 23 ~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~-----~~g~~~~~giLL~GppGtGKT~la-~alA~ 81 (539)
.+|+++.-.+...+.|... .+..+..++ .+-...++.+++.||+|+|||..+ -.+..
T Consensus 92 ~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 4677776556655555431 122221111 111123578999999999999864 33443
No 460
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.12 E-value=0.085 Score=46.67 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
...+++.|++|+|||+|++++.+..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999999998743
No 461
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.11 E-value=0.057 Score=49.46 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=22.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHh
Q 009263 55 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 55 g~~~~~giLL~GppGtGKT~la~alA~~ 82 (539)
....+.-+.|.|++|+|||+|.+++++.
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445556999999999999999998754
No 462
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.11 E-value=0.07 Score=47.78 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
-++|.|++|+|||+|++++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 463
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.04 E-value=0.088 Score=45.83 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.+++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 464
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.02 E-value=0.077 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 465
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.7 Score=53.17 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHh---cCCCEEEEeCc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGS 93 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~---~~~~~~~~~~~ 93 (539)
+++++.+|+|+|||..+...... .+...+++...
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~Pt 138 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 138 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECCh
Confidence 47999999999999987543332 25566666654
No 466
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.99 E-value=0.089 Score=45.86 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.+++.|++|+|||+|++++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 467
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.95 E-value=0.67 Score=47.02 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLV 75 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 75 (539)
+..+|+++.-.+...+.|... .+..+..++... +...+.+++.+|+|+|||..
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHH
Confidence 345688875445555555431 122222221111 12346799999999999974
No 468
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.95 E-value=0.17 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
...++++.||+|+|||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999987643
No 469
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.94 E-value=0.092 Score=45.67 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.+++.|++|+|||+|+.++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 470
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.92 E-value=0.1 Score=51.58 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~ 82 (539)
+.+++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 578999999999999999999885
No 471
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.91 E-value=0.078 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.+++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 472
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.86 E-value=0.1 Score=46.13 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~ 82 (539)
.+..|++.|++|+|||+|++++.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999763
No 473
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.80 E-value=0.091 Score=45.96 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 009263 61 GVLLEGPPGCGKTLVAKAIAG 81 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~ 81 (539)
-+++.|++|+|||+|++++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999964
No 474
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.80 E-value=0.094 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~ 82 (539)
..|+|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 475
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.79 E-value=0.88 Score=45.93 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=30.5
Q ss_pred CcCcCcccCcHHHHHHHHHHHHHhcChhhhh-----hcCCCCCceEEEECCCCCcHHHHH
Q 009263 22 GVKFSDVAGIDEAVEELQELVRYLKNPELFD-----KMGIKPPHGVLLEGPPGCGKTLVA 76 (539)
Q Consensus 22 ~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~-----~~g~~~~~giLL~GppGtGKT~la 76 (539)
..+|+++.-.+...+.|.+. .+..+..++ .+-...++.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 34678776555665555441 122222221 111113468999999999999875
No 476
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.76 E-value=0.93 Score=46.71 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCcCcCcccCcHHHHHHHHHHHHHhcChhhhhhcC---CCCCceEEEECCCCCcHHHH
Q 009263 21 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLV 75 (539)
Q Consensus 21 ~~~~~~dv~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 75 (539)
+-.+|+++.-.+.+.+.|... .+..|..++... +...+.+++.+|+|+|||..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 335788875445554444321 122232222111 11346799999999999984
No 477
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.76 E-value=0.078 Score=47.15 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~ 82 (539)
.-++|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999875
No 478
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.72 E-value=0.091 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~ 82 (539)
-.+++.|++|+|||+|++++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 479
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.66 E-value=0.31 Score=53.57 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.9
Q ss_pred CCCceEEEECCCCCcHHHHH
Q 009263 57 KPPHGVLLEGPPGCGKTLVA 76 (539)
Q Consensus 57 ~~~~giLL~GppGtGKT~la 76 (539)
..+.-+.|.||+|+|||||+
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 34455899999999999996
No 480
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.62 E-value=0.1 Score=46.47 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.+++.|++|+|||+|+.++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 481
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.61 E-value=0.1 Score=45.95 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+++.|++|+|||+|++++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998744
No 482
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.56 E-value=0.1 Score=46.75 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~ 83 (539)
.|++.|++|+|||+|+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 483
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.54 E-value=0.11 Score=46.90 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
..|+|.|++|+|||+|++++.+.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 359999999999999999998743
No 484
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.51 E-value=0.12 Score=46.72 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~ 82 (539)
....+++.|++|+|||+|++++.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999875
No 485
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.50 E-value=0.12 Score=46.52 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHh
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~ 82 (539)
....+++.|++|+|||+|+.++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999764
No 486
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.49 E-value=0.095 Score=46.19 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.+++.|++|+|||+|+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 487
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.48 E-value=0.11 Score=45.98 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.+++.|++|+|||+|++++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 488
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.45 E-value=0.52 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=18.2
Q ss_pred CceEEEECCCCCcHHHHHH-HHHHh
Q 009263 59 PHGVLLEGPPGCGKTLVAK-AIAGE 82 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~-alA~~ 82 (539)
++.+++.+|+|+|||..+- .+...
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHHHH
Confidence 4789999999999998643 33433
No 489
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.45 E-value=0.21 Score=46.17 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~ 83 (539)
..-++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468888999999999999999875
No 490
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.44 E-value=0.096 Score=46.87 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~ 82 (539)
..+++.|++|+|||+|++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 491
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.44 E-value=0.099 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHh
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~ 82 (539)
..+++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 492
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.43 E-value=0.12 Score=46.99 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=21.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHhc
Q 009263 58 PPHGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 58 ~~~giLL~GppGtGKT~la~alA~~~ 83 (539)
....|+|.|++|+|||+|++++.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34569999999999999999998643
No 493
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.38 E-value=0.11 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
..|++.|++|+|||+|++++.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 359999999999999999998743
No 494
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.36 E-value=0.16 Score=46.09 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=4.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHh
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~ 82 (539)
.|++.|++|+|||+|+.++.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
No 495
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.34 E-value=0.12 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~ 82 (539)
...|++.|++|+|||+|+.++.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 496
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.30 E-value=0.12 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
.-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999876
No 497
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.24 E-value=0.23 Score=47.16 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=26.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHhc--CCCEEEEe
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGEA--GVPFYQMA 91 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~~--~~~~~~~~ 91 (539)
...+++.|.+|+|||+++..+|..+ +..+..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3458889999999999999998765 55555554
No 498
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.22 E-value=0.1 Score=46.43 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHhc
Q 009263 60 HGVLLEGPPGCGKTLVAKAIAGEA 83 (539)
Q Consensus 60 ~giLL~GppGtGKT~la~alA~~~ 83 (539)
..+++.|++|+|||+|++++.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998743
No 499
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.19 E-value=0.14 Score=46.11 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHh
Q 009263 59 PHGVLLEGPPGCGKTLVAKAIAGE 82 (539)
Q Consensus 59 ~~giLL~GppGtGKT~la~alA~~ 82 (539)
.-.|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999885
No 500
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.18 E-value=0.11 Score=58.13 Aligned_cols=33 Identities=36% Similarity=0.517 Sum_probs=24.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009263 61 GVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 93 (539)
Q Consensus 61 giLL~GppGtGKT~la~alA~~~----~~~~~~~~~~ 93 (539)
.+++.||||||||+++..++..+ +..++.+..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~t 409 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 409 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESS
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence 47899999999999888876653 3455555444
Done!