Query 009266
Match_columns 538
No_of_seqs 867 out of 3347
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 22:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6.7E-58 1.4E-62 386.3 29.2 320 4-413 121-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 4.2E-56 9E-61 375.4 28.4 328 52-450 106-478 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-51 8.3E-56 349.9 22.9 291 52-413 166-458 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 4.7E-49 1E-53 337.2 22.1 276 2-371 179-458 (459)
5 KOG0286 G-protein beta subunit 100.0 3.8E-46 8.1E-51 304.4 32.0 297 48-413 42-343 (343)
6 KOG0315 G-protein beta subunit 100.0 6.1E-46 1.3E-50 296.2 29.7 293 74-432 11-306 (311)
7 KOG0319 WD40-repeat-containing 100.0 3.8E-46 8.3E-51 341.0 27.5 371 6-453 113-619 (775)
8 KOG0318 WD40 repeat stress pro 100.0 9.2E-43 2E-47 306.7 40.6 416 4-451 65-558 (603)
9 KOG0315 G-protein beta subunit 100.0 1.1E-43 2.4E-48 283.3 31.3 297 10-394 10-309 (311)
10 KOG0319 WD40-repeat-containing 100.0 2.6E-43 5.5E-48 322.6 29.6 405 6-450 70-574 (775)
11 KOG0265 U5 snRNP-specific prot 100.0 5.9E-43 1.3E-47 286.9 26.7 295 52-412 38-335 (338)
12 KOG0279 G protein beta subunit 100.0 8.1E-42 1.8E-46 277.4 30.8 291 52-415 6-313 (315)
13 KOG0279 G protein beta subunit 100.0 1.1E-41 2.4E-46 276.6 29.8 289 6-373 24-313 (315)
14 KOG0306 WD40-repeat-containing 100.0 3.6E-42 7.7E-47 315.4 30.2 392 5-453 72-664 (888)
15 KOG0282 mRNA splicing factor [ 100.0 2.3E-43 5E-48 307.6 19.6 295 52-413 205-503 (503)
16 KOG0318 WD40 repeat stress pro 100.0 2E-40 4.4E-45 292.0 38.0 369 5-451 197-600 (603)
17 KOG0273 Beta-transducin family 100.0 3.2E-41 6.9E-46 293.1 29.7 324 3-415 184-523 (524)
18 KOG0296 Angio-associated migra 100.0 9.4E-41 2E-45 281.2 30.9 323 6-415 72-398 (399)
19 KOG0285 Pleiotropic regulator 100.0 1.2E-41 2.7E-46 285.5 25.1 293 49-415 139-439 (460)
20 KOG0286 G-protein beta subunit 100.0 8.4E-41 1.8E-45 273.2 29.1 275 6-371 63-343 (343)
21 KOG0295 WD40 repeat-containing 100.0 5E-41 1.1E-45 282.6 24.3 293 49-414 96-405 (406)
22 KOG0293 WD40 repeat-containing 100.0 5.7E-41 1.2E-45 286.7 25.0 299 49-417 212-515 (519)
23 KOG0291 WD40-repeat-containing 100.0 4.6E-39 9.9E-44 295.3 37.7 342 3-417 194-552 (893)
24 KOG0291 WD40-repeat-containing 100.0 3.3E-39 7.1E-44 296.2 34.9 322 3-417 270-614 (893)
25 KOG0645 WD40 repeat protein [G 100.0 7.5E-39 1.6E-43 259.1 31.0 294 51-415 4-311 (312)
26 KOG0284 Polyadenylation factor 100.0 8.5E-41 1.8E-45 285.3 19.3 283 60-415 95-380 (464)
27 KOG0273 Beta-transducin family 100.0 8.7E-39 1.9E-43 278.0 30.5 319 54-447 172-517 (524)
28 KOG0295 WD40 repeat-containing 100.0 6.8E-40 1.5E-44 275.8 22.0 277 4-372 114-405 (406)
29 KOG0316 Conserved WD40 repeat- 100.0 9.4E-39 2E-43 253.1 26.8 284 54-413 10-297 (307)
30 KOG0296 Angio-associated migra 100.0 1.6E-38 3.4E-43 267.8 26.5 334 54-451 57-396 (399)
31 KOG0263 Transcription initiati 100.0 5.2E-39 1.1E-43 297.5 22.7 278 57-418 374-652 (707)
32 KOG0275 Conserved WD40 repeat- 100.0 1.4E-39 3.1E-44 269.9 17.0 291 3-414 218-508 (508)
33 KOG0263 Transcription initiati 100.0 2.1E-38 4.5E-43 293.5 25.7 259 3-293 383-652 (707)
34 KOG0306 WD40-repeat-containing 100.0 1.7E-37 3.6E-42 284.9 31.3 395 13-450 36-619 (888)
35 KOG0266 WD40 repeat-containing 100.0 1.8E-37 3.8E-42 296.4 33.0 296 52-415 149-454 (456)
36 cd00200 WD40 WD40 domain, foun 100.0 7E-37 1.5E-41 280.8 34.5 286 55-413 3-289 (289)
37 PLN00181 protein SPA1-RELATED; 100.0 1.5E-36 3.2E-41 312.6 39.0 293 56-414 478-792 (793)
38 KOG0285 Pleiotropic regulator 100.0 1.5E-37 3.3E-42 261.0 25.3 281 6-373 159-439 (460)
39 KOG1334 WD40 repeat protein [G 100.0 2E-38 4.3E-43 277.1 18.7 362 36-429 117-480 (559)
40 KOG0284 Polyadenylation factor 100.0 1.9E-38 4.1E-43 271.0 18.1 275 6-373 104-380 (464)
41 KOG0278 Serine/threonine kinas 100.0 2.4E-38 5.2E-43 253.0 16.9 292 55-422 8-304 (334)
42 KOG0292 Vesicle coat complex C 100.0 3.6E-37 7.9E-42 287.5 26.8 303 56-415 4-321 (1202)
43 KOG0276 Vesicle coat complex C 100.0 5.5E-36 1.2E-40 269.4 33.3 265 6-299 21-307 (794)
44 KOG0276 Vesicle coat complex C 100.0 6.6E-37 1.4E-41 275.3 25.7 286 53-410 5-294 (794)
45 KOG1446 Histone H3 (Lys4) meth 100.0 3.5E-35 7.6E-40 243.9 32.5 298 51-417 4-305 (311)
46 KOG0281 Beta-TrCP (transducin 100.0 2.3E-37 4.9E-42 259.1 17.9 276 60-419 196-481 (499)
47 KOG0266 WD40 repeat-containing 100.0 7.5E-36 1.6E-40 285.3 30.2 280 5-373 166-454 (456)
48 KOG0281 Beta-TrCP (transducin 100.0 3.3E-37 7.2E-42 258.1 16.6 274 10-378 207-482 (499)
49 KOG0645 WD40 repeat protein [G 100.0 1.1E-34 2.4E-39 235.0 30.0 282 4-373 21-311 (312)
50 KOG0265 U5 snRNP-specific prot 100.0 2.2E-35 4.8E-40 242.5 25.2 279 100-449 43-334 (338)
51 KOG0313 Microtubule binding pr 100.0 3.2E-35 7E-40 249.1 25.8 273 10-415 115-418 (423)
52 KOG0292 Vesicle coat complex C 100.0 3.8E-35 8.3E-40 274.1 28.6 251 4-297 15-287 (1202)
53 KOG0772 Uncharacterized conser 100.0 2.4E-35 5.2E-40 259.4 24.2 303 52-412 158-484 (641)
54 KOG0282 mRNA splicing factor [ 100.0 7.4E-36 1.6E-40 260.9 19.9 276 5-371 222-503 (503)
55 KOG1407 WD40 repeat protein [F 100.0 4.7E-34 1E-38 230.1 27.4 286 55-414 14-310 (313)
56 KOG0643 Translation initiation 100.0 5.6E-35 1.2E-39 236.1 22.1 287 56-416 5-318 (327)
57 KOG0278 Serine/threonine kinas 100.0 7.9E-36 1.7E-40 238.7 15.8 280 2-378 19-302 (334)
58 cd00200 WD40 WD40 domain, foun 100.0 4.6E-33 1E-37 255.4 32.9 273 5-371 16-289 (289)
59 KOG0293 WD40 repeat-containing 100.0 2.8E-34 6.1E-39 245.9 22.7 279 5-374 231-514 (519)
60 KOG0283 WD40 repeat-containing 100.0 2.4E-34 5.1E-39 269.0 24.0 259 51-374 256-577 (712)
61 KOG0640 mRNA cleavage stimulat 100.0 3.4E-34 7.3E-39 236.5 21.8 297 55-415 106-426 (430)
62 KOG0288 WD40 repeat protein Ti 100.0 2.8E-35 6E-40 252.1 15.4 287 53-413 167-459 (459)
63 KOG0316 Conserved WD40 repeat- 100.0 2.1E-33 4.6E-38 222.8 24.0 272 4-371 23-297 (307)
64 KOG0310 Conserved WD40 repeat- 100.0 1.9E-33 4.2E-38 246.2 26.0 285 61-417 26-311 (487)
65 KOG1407 WD40 repeat protein [F 100.0 2E-33 4.4E-38 226.4 23.5 273 101-444 17-293 (313)
66 KOG0268 Sof1-like rRNA process 100.0 1.4E-34 3E-39 243.8 16.4 289 52-418 57-348 (433)
67 KOG0277 Peroxisomal targeting 100.0 5.7E-33 1.2E-37 222.9 22.8 268 18-414 36-308 (311)
68 KOG1539 WD repeat protein [Gen 100.0 2.1E-32 4.6E-37 254.5 29.7 384 10-450 172-645 (910)
69 KOG0647 mRNA export protein (c 100.0 4E-32 8.8E-37 223.6 26.6 277 58-403 24-311 (347)
70 PLN00181 protein SPA1-RELATED; 100.0 2E-31 4.3E-36 274.7 34.6 300 82-451 457-791 (793)
71 KOG0643 Translation initiation 100.0 8.6E-32 1.9E-36 217.8 23.9 288 6-373 18-317 (327)
72 KOG0289 mRNA splicing factor [ 100.0 2E-31 4.3E-36 230.0 27.6 283 62-414 220-505 (506)
73 KOG0313 Microtubule binding pr 100.0 6.5E-32 1.4E-36 229.1 23.6 301 60-451 104-416 (423)
74 KOG0300 WD40 repeat-containing 100.0 6.7E-32 1.5E-36 223.8 21.9 306 40-417 127-478 (481)
75 KOG0274 Cdc4 and related F-box 100.0 2.9E-31 6.4E-36 252.0 29.4 284 55-420 201-487 (537)
76 KOG0277 Peroxisomal targeting 100.0 1E-32 2.3E-37 221.4 16.1 241 1-289 64-308 (311)
77 KOG0640 mRNA cleavage stimulat 100.0 3.8E-32 8.2E-37 224.5 19.0 306 3-373 117-426 (430)
78 KOG0294 WD40 repeat-containing 100.0 2.2E-30 4.8E-35 214.7 28.8 280 12-375 3-283 (362)
79 KOG1036 Mitotic spindle checkp 100.0 1.6E-30 3.5E-35 215.1 27.9 275 60-405 12-294 (323)
80 KOG0289 mRNA splicing factor [ 100.0 6.2E-31 1.3E-35 227.0 25.9 275 9-372 230-505 (506)
81 KOG0283 WD40 repeat-containing 100.0 1E-31 2.3E-36 251.4 22.7 254 101-417 264-578 (712)
82 KOG0973 Histone transcription 100.0 4E-31 8.7E-36 254.0 26.8 295 60-419 12-359 (942)
83 KOG0305 Anaphase promoting com 100.0 1.4E-30 3E-35 237.7 29.0 271 10-375 188-463 (484)
84 KOG0305 Anaphase promoting com 100.0 8.8E-31 1.9E-35 239.0 27.0 276 64-417 180-463 (484)
85 KOG0274 Cdc4 and related F-box 100.0 1.5E-30 3.2E-35 247.3 29.4 274 10-385 218-494 (537)
86 KOG1063 RNA polymerase II elon 100.0 1.5E-29 3.3E-34 230.9 34.3 398 3-451 197-697 (764)
87 KOG0275 Conserved WD40 repeat- 100.0 7.3E-32 1.6E-36 224.2 17.4 281 60-450 212-506 (508)
88 KOG0299 U3 snoRNP-associated p 100.0 5.9E-31 1.3E-35 228.9 23.7 304 3-370 147-453 (479)
89 PTZ00421 coronin; Provisional 100.0 1.4E-29 2.9E-34 240.7 35.0 249 6-292 28-292 (493)
90 KOG0310 Conserved WD40 repeat- 100.0 9.5E-31 2.1E-35 229.4 24.3 274 4-372 33-308 (487)
91 KOG0299 U3 snoRNP-associated p 100.0 2E-30 4.3E-35 225.7 25.3 300 54-415 135-456 (479)
92 PTZ00421 coronin; Provisional 100.0 7E-30 1.5E-34 242.7 31.4 273 60-398 19-316 (493)
93 KOG0268 Sof1-like rRNA process 100.0 1.4E-31 3.1E-36 225.7 17.3 276 6-379 75-351 (433)
94 KOG1408 WD40 repeat protein [F 100.0 9.1E-30 2E-34 233.1 28.6 378 9-450 269-710 (1080)
95 KOG1063 RNA polymerase II elon 100.0 4.2E-29 9E-34 228.1 32.4 403 8-454 157-649 (764)
96 KOG0288 WD40 repeat protein Ti 100.0 1.5E-31 3.2E-36 229.4 15.4 276 6-371 183-459 (459)
97 KOG1408 WD40 repeat protein [F 100.0 5E-30 1.1E-34 234.8 25.2 330 6-416 332-714 (1080)
98 KOG0641 WD40 repeat protein [G 100.0 4.1E-28 9E-33 191.8 32.6 300 51-415 23-349 (350)
99 KOG0772 Uncharacterized conser 100.0 2.1E-30 4.5E-35 228.5 21.6 287 6-371 175-485 (641)
100 KOG1310 WD40 repeat protein [G 100.0 9.7E-30 2.1E-34 226.1 24.9 251 43-294 32-307 (758)
101 KOG0294 WD40 repeat-containing 100.0 2E-29 4.4E-34 209.0 25.1 265 76-417 4-283 (362)
102 PTZ00420 coronin; Provisional 100.0 6.4E-29 1.4E-33 236.9 32.4 251 79-398 50-319 (568)
103 KOG0308 Conserved WD40 repeat- 100.0 1.8E-30 3.9E-35 235.3 20.0 242 6-292 33-287 (735)
104 KOG0301 Phospholipase A2-activ 100.0 2.8E-29 6.1E-34 229.3 27.4 284 51-416 4-289 (745)
105 KOG2106 Uncharacterized conser 100.0 1.6E-28 3.6E-33 216.1 30.5 351 5-450 208-623 (626)
106 KOG1273 WD40 repeat protein [G 100.0 2.1E-29 4.6E-34 208.8 23.2 298 64-419 26-326 (405)
107 KOG1539 WD repeat protein [Gen 100.0 2.5E-29 5.3E-34 234.3 25.8 325 4-416 251-649 (910)
108 KOG2055 WD40 repeat protein [G 100.0 3.6E-29 7.7E-34 217.9 25.0 290 61-415 213-512 (514)
109 KOG1274 WD40 repeat protein [G 100.0 3.9E-28 8.5E-33 228.9 33.9 286 58-412 10-297 (933)
110 KOG1446 Histone H3 (Lys4) meth 100.0 5.5E-28 1.2E-32 201.2 30.2 273 101-443 11-295 (311)
111 PTZ00420 coronin; Provisional 100.0 2.4E-28 5.1E-33 233.0 31.6 215 53-292 66-295 (568)
112 KOG0641 WD40 repeat protein [G 100.0 1.8E-27 4E-32 188.1 30.1 305 2-373 36-349 (350)
113 KOG0264 Nucleosome remodeling 100.0 7.7E-29 1.7E-33 215.9 24.2 259 50-416 114-405 (422)
114 KOG1332 Vesicle coat complex C 100.0 4E-29 8.7E-34 199.7 20.2 248 6-291 19-287 (299)
115 KOG0639 Transducin-like enhanc 100.0 2.3E-29 5E-34 221.3 20.6 288 52-414 411-703 (705)
116 KOG0973 Histone transcription 100.0 6.4E-29 1.4E-33 239.0 25.5 293 6-374 21-356 (942)
117 KOG2048 WD40 repeat protein [G 100.0 7.4E-27 1.6E-31 213.1 37.4 399 4-452 32-547 (691)
118 KOG0300 WD40 repeat-containing 100.0 7.9E-29 1.7E-33 205.6 22.0 276 9-375 159-478 (481)
119 KOG2096 WD40 repeat protein [G 100.0 3.9E-28 8.5E-33 201.6 25.9 305 54-416 79-403 (420)
120 KOG0308 Conserved WD40 repeat- 100.0 3.6E-29 7.7E-34 226.9 20.1 296 59-416 19-328 (735)
121 KOG4283 Transcription-coupled 100.0 8.8E-28 1.9E-32 197.4 25.5 309 56-415 38-365 (397)
122 KOG0646 WD40 repeat protein [G 100.0 1.3E-28 2.9E-33 214.8 21.9 261 61-415 81-350 (476)
123 KOG0647 mRNA export protein (c 100.0 1E-27 2.2E-32 197.8 24.8 276 3-362 33-312 (347)
124 KOG1332 Vesicle coat complex C 100.0 1.8E-28 3.9E-33 196.1 18.7 258 55-373 5-286 (299)
125 KOG4227 WD40 repeat protein [G 100.0 5.5E-28 1.2E-32 206.3 22.9 310 53-415 48-387 (609)
126 KOG0321 WD40 repeat-containing 100.0 1.1E-27 2.5E-32 216.7 25.1 308 66-418 54-394 (720)
127 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 4E-26 8.7E-31 210.8 35.3 292 11-395 2-300 (300)
128 KOG2106 Uncharacterized conser 100.0 1.7E-26 3.6E-31 203.5 30.4 360 53-451 96-475 (626)
129 KOG0264 Nucleosome remodeling 100.0 9.1E-28 2E-32 209.2 21.8 264 5-291 132-405 (422)
130 KOG0650 WD40 repeat nucleolar 100.0 4.4E-27 9.5E-32 211.4 25.5 291 52-413 391-733 (733)
131 KOG0301 Phospholipase A2-activ 100.0 2E-27 4.2E-32 217.3 23.5 279 97-454 7-289 (745)
132 KOG2055 WD40 repeat protein [G 100.0 9E-27 2E-31 203.0 24.3 290 2-373 217-512 (514)
133 KOG0639 Transducin-like enhanc 100.0 1.4E-27 3E-32 210.1 19.0 274 7-372 428-703 (705)
134 KOG1274 WD40 repeat protein [G 100.0 8.7E-26 1.9E-30 213.2 32.2 253 101-418 10-265 (933)
135 KOG2048 WD40 repeat protein [G 100.0 1.9E-25 4.2E-30 204.0 31.7 372 9-417 79-550 (691)
136 KOG1273 WD40 repeat protein [G 100.0 2.6E-26 5.7E-31 190.5 22.5 289 4-372 29-321 (405)
137 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.2E-25 4.7E-30 205.9 31.5 277 73-419 1-283 (300)
138 KOG1036 Mitotic spindle checkp 100.0 1.4E-25 3E-30 186.1 26.2 269 99-443 8-294 (323)
139 KOG4328 WD40 protein [Function 100.0 4E-26 8.6E-31 198.9 23.6 306 52-415 177-495 (498)
140 KOG4283 Transcription-coupled 99.9 1.5E-25 3.2E-30 184.4 24.3 303 6-372 52-364 (397)
141 KOG0646 WD40 repeat protein [G 99.9 5.2E-26 1.1E-30 198.7 22.7 291 78-433 12-326 (476)
142 KOG0269 WD40 repeat-containing 99.9 2E-26 4.3E-31 213.4 21.2 290 62-417 40-342 (839)
143 KOG0321 WD40 repeat-containing 99.9 2E-25 4.2E-30 202.4 24.5 296 9-375 63-393 (720)
144 KOG0269 WD40 repeat-containing 99.9 1E-26 2.2E-31 215.2 16.4 225 2-271 92-319 (839)
145 KOG2445 Nuclear pore complex c 99.9 6.6E-25 1.4E-29 181.7 25.0 272 97-415 6-318 (361)
146 KOG1445 Tumor-specific antigen 99.9 7.9E-25 1.7E-29 198.4 27.5 203 2-234 84-293 (1012)
147 KOG1034 Transcriptional repres 99.9 2.9E-25 6.3E-30 185.5 22.7 319 57-414 34-382 (385)
148 KOG0267 Microtubule severing p 99.9 4.6E-27 1E-31 215.8 11.4 258 8-406 2-259 (825)
149 KOG2096 WD40 repeat protein [G 99.9 2E-24 4.3E-29 179.7 25.3 297 5-372 93-401 (420)
150 KOG2919 Guanine nucleotide-bin 99.9 9.2E-25 2E-29 182.1 23.3 288 61-406 49-361 (406)
151 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-24 2.3E-29 191.9 23.6 264 63-397 36-305 (673)
152 KOG1009 Chromatin assembly com 99.9 2E-24 4.4E-29 185.6 23.9 328 8-420 24-377 (434)
153 KOG2445 Nuclear pore complex c 99.9 8.6E-24 1.9E-28 175.2 25.7 293 57-382 9-330 (361)
154 KOG0322 G-protein beta subunit 99.9 8.3E-25 1.8E-29 177.2 17.6 305 53-414 6-322 (323)
155 KOG0302 Ribosome Assembly prot 99.9 2.9E-24 6.2E-29 182.8 20.9 272 53-370 143-435 (440)
156 KOG4328 WD40 protein [Function 99.9 3.5E-24 7.6E-29 186.9 21.7 290 4-373 193-495 (498)
157 KOG0302 Ribosome Assembly prot 99.9 2.2E-24 4.8E-29 183.5 18.2 262 9-288 164-436 (440)
158 KOG0270 WD40 repeat-containing 99.9 3.8E-24 8.3E-29 186.0 19.6 254 9-292 191-451 (463)
159 KOG0307 Vesicle coat complex C 99.9 4.2E-25 9.1E-30 213.9 15.2 290 65-418 10-330 (1049)
160 KOG0650 WD40 repeat nucleolar 99.9 1.4E-23 3.1E-28 189.0 23.3 290 99-450 395-732 (733)
161 KOG0267 Microtubule severing p 99.9 1E-25 2.3E-30 207.0 9.7 224 9-285 39-262 (825)
162 KOG1188 WD40 repeat protein [G 99.9 6.9E-24 1.5E-28 178.3 19.6 291 11-372 41-345 (376)
163 KOG4378 Nuclear protein COP1 [ 99.9 3.4E-24 7.4E-29 188.7 18.3 252 14-354 51-304 (673)
164 KOG1188 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 176.9 19.8 290 74-415 41-346 (376)
165 KOG0270 WD40 repeat-containing 99.9 5.2E-23 1.1E-27 179.0 23.6 286 66-419 130-453 (463)
166 KOG1538 Uncharacterized conser 99.9 3.6E-22 7.7E-27 182.4 28.0 269 5-372 19-292 (1081)
167 KOG0642 Cell-cycle nuclear pro 99.9 8.8E-24 1.9E-28 189.3 14.5 305 11-419 243-565 (577)
168 KOG1538 Uncharacterized conser 99.9 1.3E-22 2.8E-27 185.2 21.7 275 63-416 14-294 (1081)
169 KOG1963 WD40 repeat protein [G 99.9 2.1E-21 4.6E-26 183.4 30.3 369 4-416 22-539 (792)
170 KOG1034 Transcriptional repres 99.9 1.4E-22 2.9E-27 169.6 19.5 270 59-373 87-383 (385)
171 KOG1445 Tumor-specific antigen 99.9 2.3E-21 5E-26 176.1 25.0 203 203-454 627-845 (1012)
172 KOG0644 Uncharacterized conser 99.9 3.8E-23 8.1E-28 193.3 12.3 287 52-417 181-470 (1113)
173 KOG0307 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 197.4 15.8 251 61-376 64-330 (1049)
174 KOG1832 HIV-1 Vpr-binding prot 99.9 3.5E-23 7.5E-28 194.8 10.1 204 49-293 1089-1294(1516)
175 KOG4497 Uncharacterized conser 99.9 2.7E-21 5.9E-26 162.0 20.2 374 3-446 13-425 (447)
176 COG2319 FOG: WD40 repeat [Gene 99.9 5.6E-19 1.2E-23 172.6 40.1 352 5-450 72-439 (466)
177 KOG4227 WD40 repeat protein [G 99.9 7.1E-21 1.5E-25 163.1 20.5 318 6-372 64-386 (609)
178 KOG0642 Cell-cycle nuclear pro 99.9 1.5E-21 3.3E-26 175.1 16.4 255 5-294 301-565 (577)
179 KOG2919 Guanine nucleotide-bin 99.9 3.2E-20 7E-25 155.2 22.7 285 3-364 54-361 (406)
180 COG2319 FOG: WD40 repeat [Gene 99.9 2.1E-18 4.6E-23 168.5 39.0 316 7-416 119-443 (466)
181 KOG1007 WD repeat protein TSSC 99.9 3.6E-20 7.8E-25 152.5 21.7 281 55-373 57-361 (370)
182 PRK11028 6-phosphogluconolacto 99.9 5.1E-19 1.1E-23 164.5 32.5 288 13-373 5-304 (330)
183 KOG0649 WD40 repeat protein [G 99.9 3.2E-19 6.9E-24 143.3 25.4 283 62-413 11-314 (325)
184 KOG1587 Cytoplasmic dynein int 99.9 1.8E-19 3.9E-24 170.3 27.7 286 83-417 222-518 (555)
185 KOG1007 WD repeat protein TSSC 99.9 1.7E-19 3.6E-24 148.6 23.9 272 82-416 39-362 (370)
186 KOG1517 Guanine nucleotide bin 99.9 6.5E-20 1.4E-24 176.2 24.8 298 60-418 1063-1384(1387)
187 PRK11028 6-phosphogluconolacto 99.9 8.3E-19 1.8E-23 163.0 30.6 282 77-415 6-304 (330)
188 KOG0290 Conserved WD40 repeat- 99.9 3.4E-19 7.5E-24 146.9 24.1 209 59-292 94-320 (364)
189 KOG1009 Chromatin assembly com 99.9 9.1E-20 2E-24 157.2 20.2 162 61-236 13-197 (434)
190 KOG1523 Actin-related protein 99.9 7.2E-19 1.6E-23 147.1 24.2 222 60-292 9-238 (361)
191 KOG2110 Uncharacterized conser 99.9 6E-18 1.3E-22 144.5 30.0 239 61-374 5-249 (391)
192 KOG0290 Conserved WD40 repeat- 99.9 4.3E-19 9.4E-24 146.3 22.2 289 54-411 38-361 (364)
193 KOG1963 WD40 repeat protein [G 99.8 1.6E-18 3.6E-23 164.1 27.6 345 6-417 213-585 (792)
194 KOG1240 Protein kinase contain 99.8 5.2E-19 1.1E-23 172.8 24.3 316 49-413 1036-1431(1431)
195 KOG1587 Cytoplasmic dynein int 99.8 2.1E-18 4.5E-23 163.2 27.0 257 60-374 241-517 (555)
196 KOG0303 Actin-binding protein 99.8 4.1E-19 8.8E-24 152.6 19.6 211 55-293 75-297 (472)
197 KOG0649 WD40 repeat protein [G 99.8 9.1E-18 2E-22 135.1 25.0 245 6-291 18-275 (325)
198 KOG0303 Actin-binding protein 99.8 4E-19 8.8E-24 152.6 18.5 208 1-237 85-297 (472)
199 KOG1517 Guanine nucleotide bin 99.8 2.3E-18 5E-23 165.8 24.2 296 5-376 1071-1384(1387)
200 PF02239 Cytochrom_D1: Cytochr 99.8 3.6E-17 7.8E-22 151.0 30.0 320 13-420 9-352 (369)
201 KOG2110 Uncharacterized conser 99.8 2.2E-17 4.8E-22 141.1 26.0 237 104-416 5-249 (391)
202 KOG0322 G-protein beta subunit 99.8 7.1E-19 1.5E-23 143.1 15.6 284 10-372 25-322 (323)
203 KOG1240 Protein kinase contain 99.8 1.6E-17 3.5E-22 162.5 27.3 343 2-371 1053-1431(1431)
204 KOG0644 Uncharacterized conser 99.8 1.3E-19 2.8E-24 170.0 11.8 272 4-376 196-471 (1113)
205 KOG1334 WD40 repeat protein [G 99.8 3.6E-19 7.7E-24 157.2 12.9 305 4-377 148-470 (559)
206 PRK01742 tolB translocation pr 99.8 4.7E-18 1E-22 162.7 21.3 237 82-396 183-426 (429)
207 KOG0771 Prolactin regulatory e 99.8 1.5E-17 3.2E-22 144.8 22.1 190 207-416 148-355 (398)
208 KOG4497 Uncharacterized conser 99.8 3.4E-17 7.3E-22 137.7 22.9 308 12-409 63-426 (447)
209 KOG1832 HIV-1 Vpr-binding prot 99.8 1.7E-19 3.7E-24 170.3 10.3 220 101-403 1098-1319(1516)
210 KOG1524 WD40 repeat-containing 99.8 7.7E-18 1.7E-22 150.5 20.1 203 12-284 77-280 (737)
211 KOG3881 Uncharacterized conser 99.8 2E-17 4.3E-22 142.4 20.1 258 60-419 54-324 (412)
212 KOG0771 Prolactin regulatory e 99.8 3.6E-18 7.7E-23 148.6 15.1 203 65-291 148-355 (398)
213 KOG1524 WD40 repeat-containing 99.8 1E-17 2.3E-22 149.7 17.7 208 74-370 76-283 (737)
214 KOG2321 WD40 repeat protein [G 99.8 6.5E-17 1.4E-21 145.9 22.2 327 21-414 8-342 (703)
215 KOG1523 Actin-related protein 99.8 1.2E-16 2.6E-21 134.0 21.8 248 103-396 9-260 (361)
216 KOG1354 Serine/threonine prote 99.8 6.6E-17 1.4E-21 136.8 20.1 272 61-375 25-361 (433)
217 KOG2315 Predicted translation 99.8 1.1E-15 2.4E-20 138.0 27.6 316 3-418 39-393 (566)
218 KOG2139 WD40 repeat protein [G 99.8 6.4E-16 1.4E-20 131.8 24.6 305 61-414 98-430 (445)
219 KOG2111 Uncharacterized conser 99.8 3.5E-15 7.6E-20 125.3 27.5 276 64-413 8-320 (346)
220 KOG1272 WD40-repeat-containing 99.8 8.9E-18 1.9E-22 147.5 12.1 225 6-289 137-361 (545)
221 KOG1272 WD40-repeat-containing 99.7 1.3E-17 2.8E-22 146.6 12.2 273 62-414 130-408 (545)
222 PRK01742 tolB translocation pr 99.7 2.3E-16 5E-21 151.1 20.5 211 19-289 183-400 (429)
223 KOG2394 WD40 protein DMR-N9 [G 99.7 1.7E-15 3.8E-20 135.8 22.2 252 117-419 134-456 (636)
224 KOG2111 Uncharacterized conser 99.7 8E-15 1.7E-19 123.2 24.6 240 106-417 7-258 (346)
225 KOG2139 WD40 repeat protein [G 99.7 5.3E-15 1.2E-19 126.3 23.9 234 8-282 108-366 (445)
226 KOG1310 WD40 repeat protein [G 99.7 5.4E-16 1.2E-20 139.3 18.0 243 100-379 46-309 (758)
227 PRK04922 tolB translocation pr 99.7 1.5E-15 3.3E-20 145.8 22.3 234 83-395 184-432 (433)
228 PRK03629 tolB translocation pr 99.7 7.7E-15 1.7E-19 140.2 26.2 235 83-396 179-428 (429)
229 KOG1409 Uncharacterized conser 99.7 2.9E-15 6.2E-20 127.1 18.8 252 51-372 14-269 (404)
230 KOG2394 WD40 protein DMR-N9 [G 99.7 2.7E-15 5.9E-20 134.6 19.6 200 216-439 185-387 (636)
231 PF02239 Cytochrom_D1: Cytochr 99.7 2.7E-14 6E-19 132.0 25.1 292 76-419 9-306 (369)
232 PF10282 Lactonase: Lactonase, 99.7 1.8E-12 4E-17 120.4 35.8 305 13-393 2-345 (345)
233 PRK02889 tolB translocation pr 99.6 4.6E-14 1E-18 135.1 23.8 235 83-396 176-425 (427)
234 PRK05137 tolB translocation pr 99.6 8.1E-14 1.8E-18 134.1 25.4 235 82-396 181-433 (435)
235 PRK03629 tolB translocation pr 99.6 7.5E-14 1.6E-18 133.4 24.9 228 128-430 179-421 (429)
236 PRK04922 tolB translocation pr 99.6 6.3E-14 1.4E-18 134.7 24.2 200 56-291 198-412 (433)
237 PRK05137 tolB translocation pr 99.6 2.2E-13 4.7E-18 131.2 28.0 220 128-422 182-419 (435)
238 KOG2321 WD40 repeat protein [G 99.6 9.3E-14 2E-18 125.9 23.0 279 7-374 60-344 (703)
239 PF10282 Lactonase: Lactonase, 99.6 9.4E-13 2E-17 122.4 28.9 291 76-415 2-322 (345)
240 KOG2314 Translation initiation 99.6 6.5E-13 1.4E-17 120.1 25.3 318 6-418 218-576 (698)
241 COG5354 Uncharacterized protei 99.6 2.3E-12 5E-17 115.5 27.9 314 3-419 37-399 (561)
242 PRK02889 tolB translocation pr 99.6 2.8E-13 6.2E-18 129.7 23.4 216 128-416 176-404 (427)
243 KOG3881 Uncharacterized conser 99.6 2.2E-13 4.7E-18 117.9 19.9 207 56-292 100-322 (412)
244 PF08662 eIF2A: Eukaryotic tra 99.6 1.5E-13 3.2E-18 115.3 17.4 113 261-419 59-183 (194)
245 KOG0280 Uncharacterized conser 99.6 1.8E-12 4E-17 108.0 22.7 206 61-292 69-286 (339)
246 KOG0974 WD-repeat protein WDR6 99.6 1.1E-12 2.4E-17 127.4 22.5 149 6-183 141-290 (967)
247 COG2706 3-carboxymuconate cycl 99.5 1E-10 2.2E-15 101.2 31.7 301 19-394 15-345 (346)
248 PF08662 eIF2A: Eukaryotic tra 99.5 8.1E-13 1.8E-17 110.8 18.2 151 65-236 9-181 (194)
249 KOG1354 Serine/threonine prote 99.5 3.9E-13 8.4E-18 114.3 16.0 259 6-293 33-362 (433)
250 KOG0974 WD-repeat protein WDR6 99.5 1E-12 2.2E-17 127.7 19.9 280 60-417 6-290 (967)
251 COG2706 3-carboxymuconate cycl 99.5 1.1E-10 2.4E-15 101.0 29.7 287 82-415 15-321 (346)
252 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.7E-10 3.6E-15 104.2 32.2 274 83-421 27-336 (352)
253 TIGR02800 propeller_TolB tol-p 99.5 5.6E-12 1.2E-16 121.8 24.7 233 82-393 169-416 (417)
254 PRK04792 tolB translocation pr 99.5 4.8E-12 1E-16 121.6 23.8 235 84-396 199-447 (448)
255 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.3E-10 5E-15 103.3 32.5 291 9-381 11-338 (352)
256 KOG2314 Translation initiation 99.5 2.8E-11 6.2E-16 109.7 25.8 305 64-445 213-559 (698)
257 KOG2041 WD40 repeat protein [G 99.5 5.4E-12 1.2E-16 117.7 20.8 278 60-403 13-326 (1189)
258 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.5E-16 118.7 24.6 215 128-417 170-399 (417)
259 PRK00178 tolB translocation pr 99.5 1.5E-11 3.2E-16 118.9 24.1 235 84-396 180-428 (430)
260 PRK00178 tolB translocation pr 99.5 2.9E-11 6.2E-16 116.9 25.7 199 56-290 193-406 (430)
261 KOG4547 WD40 repeat-containing 99.5 3.1E-12 6.8E-17 116.9 17.4 210 6-235 1-221 (541)
262 TIGR03300 assembly_YfgL outer 99.5 1E-10 2.2E-15 111.0 28.6 307 10-412 65-376 (377)
263 PRK04792 tolB translocation pr 99.4 5.5E-11 1.2E-15 114.3 25.3 199 56-290 212-425 (448)
264 COG5170 CDC55 Serine/threonine 99.4 4.4E-12 9.5E-17 106.6 15.0 270 60-372 25-366 (460)
265 KOG0280 Uncharacterized conser 99.4 1.1E-11 2.3E-16 103.5 16.6 206 64-291 124-334 (339)
266 COG5354 Uncharacterized protei 99.4 2.1E-10 4.5E-15 103.2 25.7 282 60-418 31-351 (561)
267 KOG1064 RAVE (regulator of V-A 99.4 1.2E-12 2.7E-17 133.6 13.2 186 7-241 2217-2405(2439)
268 PRK01029 tolB translocation pr 99.4 8.4E-11 1.8E-15 112.1 25.1 228 129-424 166-412 (428)
269 KOG4190 Uncharacterized conser 99.4 1.2E-12 2.7E-17 118.3 11.8 176 53-239 727-911 (1034)
270 KOG0309 Conserved WD40 repeat- 99.4 1.9E-12 4.2E-17 121.0 13.4 291 61-417 24-341 (1081)
271 KOG2315 Predicted translation 99.4 3.7E-10 8.1E-15 102.9 27.6 305 62-444 35-375 (566)
272 TIGR03300 assembly_YfgL outer 99.4 3.4E-10 7.4E-15 107.5 28.8 307 73-450 65-376 (377)
273 COG4946 Uncharacterized protei 99.4 9.7E-10 2.1E-14 98.1 29.0 212 160-433 276-495 (668)
274 KOG2041 WD40 repeat protein [G 99.4 2.7E-11 5.9E-16 113.2 20.2 245 4-281 20-278 (1189)
275 KOG4547 WD40 repeat-containing 99.4 1.2E-10 2.6E-15 106.8 23.2 193 70-291 2-221 (541)
276 PRK01029 tolB translocation pr 99.4 3.4E-10 7.5E-15 107.9 26.0 242 83-397 165-426 (428)
277 KOG1409 Uncharacterized conser 99.4 2.5E-11 5.3E-16 103.6 15.7 248 99-417 19-272 (404)
278 KOG1064 RAVE (regulator of V-A 99.4 1.3E-11 2.8E-16 126.4 14.5 199 57-299 2204-2407(2439)
279 COG4946 Uncharacterized protei 99.3 2.1E-09 4.5E-14 96.1 24.5 174 5-221 327-505 (668)
280 KOG4532 WD40-like repeat conta 99.3 7.3E-10 1.6E-14 91.5 19.8 247 10-292 84-333 (344)
281 KOG1912 WD40 repeat protein [G 99.3 4E-09 8.7E-14 100.0 27.2 371 11-423 27-514 (1062)
282 KOG4714 Nucleoporin [Nuclear s 99.3 9.7E-11 2.1E-15 96.1 14.4 200 12-235 49-255 (319)
283 PF04762 IKI3: IKI3 family; I 99.3 3.2E-08 6.9E-13 102.3 35.9 371 3-417 125-566 (928)
284 PLN02919 haloacid dehalogenase 99.3 3E-09 6.5E-14 111.9 28.5 288 108-419 571-892 (1057)
285 PF04762 IKI3: IKI3 family; I 99.3 1.5E-08 3.2E-13 104.7 32.5 203 60-292 74-335 (928)
286 KOG1912 WD40 repeat protein [G 99.2 9.3E-10 2E-14 104.1 19.2 302 62-419 16-368 (1062)
287 KOG3914 WD repeat protein WDR4 99.2 3.1E-10 6.8E-15 99.2 14.0 167 3-191 67-233 (390)
288 PLN02919 haloacid dehalogenase 99.2 2.6E-08 5.7E-13 105.0 30.9 280 65-377 571-892 (1057)
289 KOG4190 Uncharacterized conser 99.2 4.3E-11 9.4E-16 108.6 8.7 249 101-414 732-987 (1034)
290 KOG4532 WD40-like repeat conta 99.2 4.1E-09 8.9E-14 87.2 19.1 207 65-294 71-286 (344)
291 PF15492 Nbas_N: Neuroblastoma 99.2 1.6E-08 3.5E-13 85.2 22.5 148 66-224 2-167 (282)
292 KOG0882 Cyclophilin-related pe 99.2 4.9E-10 1.1E-14 99.2 13.6 269 7-298 17-313 (558)
293 KOG0882 Cyclophilin-related pe 99.2 1.2E-09 2.5E-14 96.9 15.4 299 59-381 7-313 (558)
294 KOG3914 WD repeat protein WDR4 99.2 1.7E-09 3.7E-14 94.7 15.8 165 63-244 64-233 (390)
295 PRK04043 tolB translocation pr 99.2 3.7E-08 8E-13 93.4 26.1 173 83-292 169-359 (419)
296 PRK04043 tolB translocation pr 99.1 4E-08 8.7E-13 93.2 25.5 200 152-424 189-409 (419)
297 PF08450 SGL: SMP-30/Gluconola 99.1 2.8E-07 6.1E-12 81.7 29.0 226 66-403 4-243 (246)
298 PRK11138 outer membrane biogen 99.1 1.2E-07 2.7E-12 90.4 28.1 316 10-414 69-393 (394)
299 PF07433 DUF1513: Protein of u 99.1 1.4E-07 3E-12 82.3 25.1 240 5-290 12-285 (305)
300 PF15492 Nbas_N: Neuroblastoma 99.1 2.3E-07 5.1E-12 78.3 24.8 235 110-419 3-263 (282)
301 COG5170 CDC55 Serine/threonine 99.0 2.3E-09 4.9E-14 90.6 10.3 246 103-418 25-312 (460)
302 PRK11138 outer membrane biogen 99.0 1.3E-06 2.9E-11 83.3 30.1 309 73-451 69-392 (394)
303 KOG4714 Nucleoporin [Nuclear s 99.0 5.4E-09 1.2E-13 86.1 10.4 150 9-182 100-255 (319)
304 KOG1645 RING-finger-containing 98.9 1.1E-07 2.4E-12 83.6 17.9 96 85-185 175-270 (463)
305 KOG2695 WD40 repeat protein [G 98.9 3.4E-09 7.4E-14 90.8 8.2 166 111-385 218-388 (425)
306 KOG0309 Conserved WD40 repeat- 98.9 9.5E-09 2.1E-13 96.9 11.4 221 54-291 107-340 (1081)
307 PF00400 WD40: WD domain, G-be 98.9 5.2E-09 1.1E-13 62.3 6.4 38 52-89 2-39 (39)
308 PF07433 DUF1513: Protein of u 98.9 2.5E-06 5.5E-11 74.6 25.3 206 64-292 7-249 (305)
309 KOG2066 Vacuolar assembly/sort 98.9 1.5E-07 3.3E-12 90.1 19.0 184 10-236 49-235 (846)
310 KOG4649 PQQ (pyrrolo-quinoline 98.9 2.5E-05 5.3E-10 65.2 28.7 145 10-183 23-167 (354)
311 PF13360 PQQ_2: PQQ-like domai 98.9 1.4E-06 3.1E-11 77.1 23.2 234 82-379 2-236 (238)
312 PF00400 WD40: WD domain, G-be 98.9 4.8E-09 1E-13 62.4 5.0 39 375-413 1-39 (39)
313 PF13360 PQQ_2: PQQ-like domai 98.8 2.2E-06 4.9E-11 75.8 23.1 229 19-293 2-233 (238)
314 KOG2114 Vacuolar assembly/sort 98.8 9.6E-07 2.1E-11 85.5 21.5 220 111-388 30-259 (933)
315 PF08450 SGL: SMP-30/Gluconola 98.8 6.3E-06 1.4E-10 73.1 25.5 220 5-278 7-242 (246)
316 KOG1275 PAB-dependent poly(A) 98.8 1.6E-07 3.5E-12 91.1 15.9 186 9-234 146-342 (1118)
317 KOG2695 WD40 repeat protein [G 98.8 2.1E-08 4.5E-13 86.2 8.7 162 67-244 217-386 (425)
318 PRK02888 nitrous-oxide reducta 98.8 1.9E-06 4.2E-11 82.5 21.8 334 13-413 69-459 (635)
319 cd00216 PQQ_DH Dehydrogenases 98.8 9.8E-06 2.1E-10 79.3 27.6 213 10-240 61-325 (488)
320 KOG2066 Vacuolar assembly/sort 98.8 5.5E-07 1.2E-11 86.4 18.0 191 61-290 39-233 (846)
321 KOG1275 PAB-dependent poly(A) 98.8 1.5E-07 3.3E-12 91.3 14.1 185 73-289 147-341 (1118)
322 KOG3617 WD40 and TPR repeat-co 98.8 5.2E-07 1.1E-11 87.0 17.5 113 62-182 16-132 (1416)
323 PF06977 SdiA-regulated: SdiA- 98.8 6.5E-06 1.4E-10 71.1 22.6 221 54-287 14-247 (248)
324 KOG3621 WD40 repeat-containing 98.8 2.2E-06 4.8E-11 81.3 21.1 163 60-235 32-198 (726)
325 KOG1920 IkappaB kinase complex 98.7 1.3E-05 2.9E-10 80.9 26.8 265 61-397 68-346 (1265)
326 KOG1645 RING-finger-containing 98.7 1.3E-06 2.9E-11 76.9 17.2 87 52-141 184-271 (463)
327 KOG1008 Uncharacterized conser 98.7 1.9E-08 4.2E-13 93.6 5.4 207 61-291 56-276 (783)
328 KOG4649 PQQ (pyrrolo-quinoline 98.7 0.00012 2.6E-09 61.2 27.3 111 73-192 23-134 (354)
329 KOG1008 Uncharacterized conser 98.7 2.2E-08 4.8E-13 93.2 5.6 202 4-236 64-277 (783)
330 KOG2114 Vacuolar assembly/sort 98.7 5.9E-06 1.3E-10 80.2 21.4 199 63-291 27-244 (933)
331 KOG3621 WD40 repeat-containing 98.7 8.2E-06 1.8E-10 77.6 21.2 152 7-184 42-200 (726)
332 PF06433 Me-amine-dh_H: Methyl 98.6 6.7E-06 1.5E-10 72.9 19.0 279 83-421 17-326 (342)
333 PF00930 DPPIV_N: Dipeptidyl p 98.6 9.9E-05 2.1E-09 69.2 27.7 302 7-404 1-346 (353)
334 PF08596 Lgl_C: Lethal giant l 98.6 2.5E-05 5.4E-10 73.0 21.8 246 106-405 3-326 (395)
335 PRK02888 nitrous-oxide reducta 98.5 4E-05 8.6E-10 73.8 22.8 265 75-416 68-405 (635)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.5 0.001 2.3E-08 65.4 32.5 208 10-239 69-338 (527)
337 PF06433 Me-amine-dh_H: Methyl 98.5 8.3E-05 1.8E-09 66.1 22.2 278 20-383 17-330 (342)
338 PF08596 Lgl_C: Lethal giant l 98.5 8.4E-05 1.8E-09 69.5 22.6 263 5-290 8-335 (395)
339 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.5 0.0012 2.5E-08 65.1 31.5 209 73-296 69-339 (527)
340 PF11768 DUF3312: Protein of u 98.5 0.00048 1E-08 65.0 27.0 69 345-416 262-330 (545)
341 KOG3617 WD40 and TPR repeat-co 98.4 1E-05 2.2E-10 78.4 16.2 106 5-136 22-131 (1416)
342 KOG1897 Damage-specific DNA bi 98.4 0.0028 6E-08 63.6 33.3 80 334-417 821-900 (1096)
343 cd00216 PQQ_DH Dehydrogenases 98.4 0.00054 1.2E-08 67.2 28.3 162 73-241 61-271 (488)
344 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00011 2.4E-09 68.9 22.4 283 70-424 1-325 (353)
345 PF14583 Pectate_lyase22: Olig 98.3 0.0019 4E-08 59.0 26.7 152 67-235 41-223 (386)
346 PF00780 CNH: CNH domain; Int 98.3 0.001 2.2E-08 60.2 25.9 243 72-385 6-267 (275)
347 PF10446 DUF2457: Protein of u 98.3 3E-07 6.4E-12 82.4 2.5 16 511-526 98-113 (458)
348 KOG1920 IkappaB kinase complex 98.3 0.00019 4.1E-09 73.0 22.1 212 150-416 68-323 (1265)
349 PF11768 DUF3312: Protein of u 98.3 3.9E-05 8.4E-10 72.0 16.0 74 59-137 257-330 (545)
350 PF04053 Coatomer_WDAD: Coatom 98.3 0.00032 7E-09 66.7 22.4 231 103-416 31-263 (443)
351 COG0823 TolB Periplasmic compo 98.3 0.00012 2.6E-09 69.2 18.6 174 84-291 174-359 (425)
352 PF14583 Pectate_lyase22: Olig 98.3 0.00034 7.3E-09 63.6 20.4 291 89-451 16-379 (386)
353 PF06977 SdiA-regulated: SdiA- 98.2 0.00039 8.4E-09 60.3 20.0 222 144-412 15-247 (248)
354 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0042 9.2E-08 59.2 27.9 67 345-414 219-286 (410)
355 PF04053 Coatomer_WDAD: Coatom 98.2 0.00031 6.8E-09 66.8 19.2 148 55-235 26-174 (443)
356 COG3204 Uncharacterized protei 98.1 0.0016 3.5E-08 56.1 20.9 222 57-288 81-310 (316)
357 PF03178 CPSF_A: CPSF A subuni 98.1 0.0024 5.3E-08 59.1 24.6 136 83-234 2-157 (321)
358 PF14655 RAB3GAP2_N: Rab3 GTPa 98.1 0.008 1.7E-07 56.3 27.0 92 66-160 6-118 (415)
359 COG3490 Uncharacterized protei 98.1 0.00057 1.2E-08 58.2 17.4 198 68-290 120-348 (366)
360 PF14727 PHTB1_N: PTHB1 N-term 98.1 0.008 1.7E-07 56.5 26.9 150 73-235 37-205 (418)
361 KOG1897 Damage-specific DNA bi 98.1 0.011 2.3E-07 59.6 28.5 355 62-448 488-893 (1096)
362 COG3391 Uncharacterized conser 98.1 0.0095 2.1E-07 56.4 27.6 266 85-420 13-288 (381)
363 PF04841 Vps16_N: Vps16, N-ter 98.1 0.012 2.6E-07 56.1 28.4 177 84-290 62-246 (410)
364 COG0823 TolB Periplasmic compo 98.1 0.00025 5.5E-09 67.1 16.6 190 146-405 188-389 (425)
365 PF08553 VID27: VID27 cytoplas 98.0 0.00057 1.2E-08 68.7 18.8 204 74-291 494-725 (794)
366 COG3391 Uncharacterized conser 98.0 0.014 3.1E-07 55.3 27.6 267 63-397 32-310 (381)
367 PF02897 Peptidase_S9_N: Proly 98.0 0.0083 1.8E-07 58.0 25.5 117 63-183 125-262 (414)
368 PF05096 Glu_cyclase_2: Glutam 97.9 0.007 1.5E-07 52.3 21.5 217 49-281 31-250 (264)
369 COG3386 Gluconolactonase [Carb 97.9 0.0062 1.3E-07 55.0 21.7 227 111-404 31-274 (307)
370 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.001 2.2E-08 48.6 13.0 102 64-177 2-110 (111)
371 PF00780 CNH: CNH domain; Int 97.9 0.011 2.4E-07 53.4 23.1 248 117-421 6-261 (275)
372 PF08553 VID27: VID27 cytoplas 97.8 0.0012 2.6E-08 66.5 17.4 147 216-414 493-646 (794)
373 PF15390 DUF4613: Domain of un 97.8 0.033 7.1E-07 53.1 28.1 158 61-237 19-189 (671)
374 smart00320 WD40 WD40 repeats. 97.8 7.4E-05 1.6E-09 43.7 5.5 37 53-89 4-40 (40)
375 PF03178 CPSF_A: CPSF A subuni 97.8 0.0051 1.1E-07 57.0 20.1 145 73-235 42-203 (321)
376 smart00320 WD40 WD40 repeats. 97.8 7.6E-05 1.6E-09 43.7 5.3 39 375-413 2-40 (40)
377 KOG2444 WD40 repeat protein [G 97.8 8.9E-05 1.9E-09 61.0 6.7 64 353-416 112-178 (238)
378 COG3386 Gluconolactonase [Carb 97.7 0.028 6.1E-07 50.9 22.8 195 67-290 30-243 (307)
379 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0038 8.2E-08 45.7 13.3 104 106-229 1-109 (111)
380 KOG4640 Anaphase-promoting com 97.7 0.00026 5.7E-09 66.9 9.3 95 61-160 20-115 (665)
381 PF02897 Peptidase_S9_N: Proly 97.6 0.064 1.4E-06 51.9 25.5 253 107-421 126-410 (414)
382 KOG2395 Protein involved in va 97.6 0.0038 8.2E-08 58.2 15.4 146 121-290 349-500 (644)
383 KOG2395 Protein involved in va 97.6 0.0027 5.8E-08 59.1 13.8 142 217-413 347-498 (644)
384 PF05694 SBP56: 56kDa selenium 97.5 0.035 7.5E-07 51.4 20.3 252 9-280 86-392 (461)
385 PF15390 DUF4613: Domain of un 97.5 0.073 1.6E-06 50.9 22.2 122 59-183 54-188 (671)
386 PF07995 GSDH: Glucose / Sorbo 97.5 0.089 1.9E-06 48.8 30.7 75 333-410 246-330 (331)
387 KOG4640 Anaphase-promoting com 97.5 0.00061 1.3E-08 64.5 8.9 95 104-213 20-115 (665)
388 COG3490 Uncharacterized protei 97.4 0.064 1.4E-06 46.3 19.3 213 66-293 72-313 (366)
389 PHA02713 hypothetical protein; 97.4 0.029 6.2E-07 56.1 20.5 96 84-185 273-379 (557)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.13 2.8E-06 48.5 23.7 75 345-420 310-403 (415)
391 PF05096 Glu_cyclase_2: Glutam 97.4 0.072 1.6E-06 46.3 19.4 186 9-223 55-250 (264)
392 PF12234 Rav1p_C: RAVE protein 97.3 0.019 4E-07 56.6 17.6 129 49-180 17-155 (631)
393 PRK13616 lipoprotein LpqB; Pro 97.3 0.055 1.2E-06 54.0 21.3 162 60-234 348-525 (591)
394 KOG4499 Ca2+-binding protein R 97.3 0.072 1.6E-06 44.5 19.1 45 352-396 220-264 (310)
395 KOG4441 Proteins containing BT 97.3 0.06 1.3E-06 53.8 21.3 153 71-240 283-458 (571)
396 KOG2079 Vacuolar assembly/sort 97.1 0.011 2.5E-07 60.0 13.6 74 60-136 129-203 (1206)
397 KOG2444 WD40 repeat protein [G 97.1 0.0017 3.7E-08 53.7 6.5 105 73-182 70-178 (238)
398 COG3204 Uncharacterized protei 97.1 0.17 3.7E-06 44.1 21.4 145 130-290 65-210 (316)
399 COG5276 Uncharacterized conser 97.1 0.17 3.7E-06 44.0 26.7 204 55-292 35-243 (370)
400 PF14870 PSII_BNR: Photosynthe 97.1 0.19 4.1E-06 45.3 19.7 161 101-287 141-301 (302)
401 KOG4441 Proteins containing BT 97.1 0.13 2.7E-06 51.5 20.6 229 117-418 284-549 (571)
402 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0026 5.6E-08 38.7 5.4 34 61-95 11-44 (47)
403 PRK13616 lipoprotein LpqB; Pro 97.0 0.16 3.5E-06 50.8 21.1 165 105-289 350-524 (591)
404 PHA02713 hypothetical protein; 96.9 0.055 1.2E-06 54.1 16.7 150 72-238 351-537 (557)
405 PF10647 Gmad1: Lipoprotein Lp 96.9 0.29 6.2E-06 43.4 20.3 154 63-226 25-187 (253)
406 PF10647 Gmad1: Lipoprotein Lp 96.8 0.33 7.1E-06 43.0 20.7 114 152-291 25-145 (253)
407 KOG3630 Nuclear pore complex, 96.8 0.025 5.4E-07 58.0 12.9 151 105-281 101-263 (1405)
408 PF10168 Nup88: Nuclear pore c 96.8 0.78 1.7E-05 47.0 23.4 123 11-135 34-178 (717)
409 KOG2079 Vacuolar assembly/sort 96.7 0.072 1.6E-06 54.6 15.4 106 117-234 98-203 (1206)
410 TIGR02604 Piru_Ver_Nterm putat 96.7 0.59 1.3E-05 44.2 24.7 103 62-170 14-142 (367)
411 PF05694 SBP56: 56kDa selenium 96.7 0.42 9E-06 44.6 18.8 65 386-450 312-390 (461)
412 KOG2280 Vacuolar assembly/sort 96.6 0.51 1.1E-05 46.8 19.9 237 173-442 64-314 (829)
413 PRK10115 protease 2; Provision 96.6 1.1 2.3E-05 46.3 28.5 114 62-180 127-254 (686)
414 KOG4499 Ca2+-binding protein R 96.6 0.35 7.6E-06 40.6 16.6 141 106-272 110-264 (310)
415 TIGR03074 PQQ_membr_DH membran 96.6 1 2.3E-05 46.6 23.0 215 10-241 194-484 (764)
416 PF12894 Apc4_WD40: Anaphase-p 96.5 0.0094 2E-07 36.2 4.8 32 385-416 11-42 (47)
417 KOG2280 Vacuolar assembly/sort 96.4 1.1 2.3E-05 44.7 20.7 107 62-178 44-152 (829)
418 PHA03098 kelch-like protein; P 96.4 0.33 7.2E-06 48.8 18.4 150 72-238 342-515 (534)
419 PF14870 PSII_BNR: Photosynthe 96.4 0.72 1.6E-05 41.7 27.8 276 61-412 16-301 (302)
420 PHA03098 kelch-like protein; P 96.2 0.67 1.5E-05 46.6 19.5 150 72-239 294-469 (534)
421 TIGR02604 Piru_Ver_Nterm putat 96.2 1.2 2.5E-05 42.2 24.6 110 105-223 14-142 (367)
422 KOG3630 Nuclear pore complex, 96.2 0.13 2.8E-06 53.2 13.7 215 62-289 101-339 (1405)
423 PRK10115 protease 2; Provision 96.1 2 4.3E-05 44.4 27.0 72 106-183 128-209 (686)
424 PF03022 MRJP: Major royal jel 96.1 0.69 1.5E-05 41.8 17.0 199 174-404 35-254 (287)
425 COG4257 Vgb Streptogramin lyas 96.1 0.83 1.8E-05 39.6 20.0 241 105-423 62-313 (353)
426 PF08728 CRT10: CRT10; InterP 95.9 0.69 1.5E-05 46.6 17.1 152 73-233 49-245 (717)
427 TIGR03118 PEPCTERM_chp_1 conse 95.9 1.2 2.5E-05 39.5 25.0 243 105-395 23-307 (336)
428 PF08728 CRT10: CRT10; InterP 95.9 0.35 7.6E-06 48.6 14.9 117 62-180 101-245 (717)
429 PHA02790 Kelch-like protein; P 95.8 1.4 3.1E-05 43.4 19.1 146 72-237 318-473 (480)
430 TIGR03074 PQQ_membr_DH membran 95.7 3.1 6.7E-05 43.3 22.4 129 117-245 193-355 (764)
431 PF11635 Med16: Mediator compl 95.7 2.9 6.2E-05 43.8 21.4 66 344-410 261-345 (753)
432 PF10214 Rrn6: RNA polymerase 95.6 3.7 8.1E-05 43.2 26.9 87 204-292 146-234 (765)
433 COG4590 ABC-type uncharacteriz 95.5 0.081 1.8E-06 48.8 8.4 257 6-294 123-390 (733)
434 COG4257 Vgb Streptogramin lyas 95.4 1.6 3.4E-05 37.9 15.4 200 152-418 63-265 (353)
435 PF12234 Rav1p_C: RAVE protein 95.4 0.69 1.5E-05 46.1 15.0 126 151-291 30-157 (631)
436 PF10313 DUF2415: Uncharacteri 95.3 0.11 2.4E-06 30.5 5.6 32 62-93 1-35 (43)
437 KOG0943 Predicted ubiquitin-pr 95.3 0.016 3.5E-07 59.5 3.5 10 23-32 807-816 (3015)
438 KOG3522 Predicted guanine nucl 95.2 0.48 1E-05 47.6 13.1 151 118-292 547-699 (925)
439 PHA02790 Kelch-like protein; P 95.2 2.1 4.6E-05 42.2 18.0 148 72-239 271-428 (480)
440 PF07995 GSDH: Glucose / Sorbo 95.2 2.7 5.9E-05 39.0 24.6 105 7-129 10-136 (331)
441 PRK13684 Ycf48-like protein; P 95.1 2.8 6.1E-05 39.0 21.1 160 102-289 170-330 (334)
442 PF10313 DUF2415: Uncharacteri 95.0 0.13 2.8E-06 30.3 5.4 33 151-183 1-35 (43)
443 PF11635 Med16: Mediator compl 95.0 4.8 0.0001 42.2 20.6 210 75-285 64-345 (753)
444 COG3292 Predicted periplasmic 95.0 3.2 6.9E-05 40.2 17.2 67 345-417 421-493 (671)
445 KOG4659 Uncharacterized conser 95.0 6.2 0.00013 42.3 25.4 21 260-280 660-680 (1899)
446 COG3823 Glutamine cyclotransfe 95.0 1.5 3.2E-05 36.4 13.1 134 81-222 109-247 (262)
447 KOG2377 Uncharacterized conser 94.9 1 2.2E-05 41.9 13.4 122 60-186 65-190 (657)
448 PF14761 HPS3_N: Hermansky-Pud 94.9 2 4.4E-05 36.1 14.2 118 164-292 30-165 (215)
449 PRK13684 Ycf48-like protein; P 94.8 3.5 7.7E-05 38.3 28.8 154 205-415 174-331 (334)
450 KOG1916 Nuclear protein, conta 94.5 0.013 2.7E-07 58.5 0.7 119 64-186 186-328 (1283)
451 COG3823 Glutamine cyclotransfe 94.5 2.4 5.2E-05 35.2 14.9 68 164-241 57-126 (262)
452 COG5167 VID27 Protein involved 94.5 1.2 2.7E-05 42.1 13.0 60 354-414 572-631 (776)
453 PF10168 Nup88: Nuclear pore c 94.4 3.4 7.3E-05 42.6 17.3 94 261-375 84-181 (717)
454 TIGR03118 PEPCTERM_chp_1 conse 94.2 3.8 8.3E-05 36.5 22.9 231 151-419 23-283 (336)
455 KOG1916 Nuclear protein, conta 94.2 0.05 1.1E-06 54.5 3.9 100 127-235 110-214 (1283)
456 KOG4460 Nuclear pore complex, 94.2 1.1 2.3E-05 42.7 12.0 168 10-209 52-222 (741)
457 PF07569 Hira: TUP1-like enhan 94.1 0.37 7.9E-06 41.5 8.7 75 216-292 22-97 (219)
458 PLN00033 photosystem II stabil 93.8 6.3 0.00014 37.5 18.4 151 63-231 240-396 (398)
459 PF13449 Phytase-like: Esteras 93.7 5.8 0.00012 36.8 16.6 165 104-279 19-232 (326)
460 PF14727 PHTB1_N: PTHB1 N-term 93.5 7.2 0.00016 37.2 26.4 154 117-291 36-205 (418)
461 PF14761 HPS3_N: Hermansky-Pud 93.4 4.2 9.1E-05 34.3 16.6 162 119-290 29-214 (215)
462 smart00036 CNH Domain found in 93.4 6.2 0.00014 36.1 29.7 60 73-137 13-74 (302)
463 PF14781 BBS2_N: Ciliary BBSom 93.3 2.9 6.2E-05 32.1 12.7 117 65-186 2-130 (136)
464 KOG1898 Splicing factor 3b, su 93.3 12 0.00027 39.2 31.8 38 61-98 582-625 (1205)
465 PF12657 TFIIIC_delta: Transcr 93.1 1.3 2.9E-05 36.5 10.0 30 344-374 87-122 (173)
466 PF07569 Hira: TUP1-like enhan 93.1 1 2.2E-05 38.8 9.5 70 69-141 18-100 (219)
467 COG5167 VID27 Protein involved 92.3 3.7 8E-05 39.1 12.4 147 117-291 478-633 (776)
468 KOG3616 Selective LIM binding 91.7 5.3 0.00012 40.0 13.3 328 64-432 17-422 (1636)
469 PF12657 TFIIIC_delta: Transcr 91.6 2 4.4E-05 35.4 9.4 32 151-182 86-122 (173)
470 TIGR02276 beta_rpt_yvtn 40-res 91.4 0.99 2.1E-05 26.5 5.5 40 353-393 1-41 (42)
471 KOG2247 WD40 repeat-containing 91.4 0.03 6.5E-07 52.0 -1.7 147 103-281 33-179 (615)
472 PLN00033 photosystem II stabil 91.3 14 0.0003 35.3 32.7 114 261-412 280-396 (398)
473 PF02333 Phytase: Phytase; In 91.2 13 0.00028 34.8 19.9 199 70-290 65-290 (381)
474 PLN02193 nitrile-specifier pro 91.1 17 0.00036 35.9 22.8 155 72-240 228-416 (470)
475 KOG1983 Tomosyn and related SN 91.0 7.3 0.00016 42.1 14.8 32 104-137 35-66 (993)
476 KOG2247 WD40 repeat-containing 91.0 0.032 6.9E-07 51.9 -2.0 131 12-172 48-179 (615)
477 TIGR03548 mutarot_permut cycli 90.9 13 0.00029 34.4 22.6 228 9-287 13-309 (323)
478 PF07250 Glyoxal_oxid_N: Glyox 90.8 6.6 0.00014 34.3 11.8 144 87-237 50-200 (243)
479 PF03344 Daxx: Daxx Family; I 90.8 0.071 1.5E-06 53.8 0.0 66 473-538 437-502 (713)
480 PF03153 TFIIA: Transcription 90.7 0.087 1.9E-06 49.9 0.5 59 480-538 274-332 (375)
481 COG5406 Nucleosome binding fac 90.7 0.22 4.8E-06 47.9 3.1 56 483-538 926-981 (1001)
482 PF10214 Rrn6: RNA polymerase 90.6 25 0.00055 37.2 23.4 248 25-291 1-277 (765)
483 PF12768 Rax2: Cortical protei 90.6 7.2 0.00016 35.0 12.2 118 22-160 18-146 (281)
484 PLN02153 epithiospecifier prot 90.5 15 0.00033 34.4 22.8 244 9-291 32-340 (341)
485 KOG1898 Splicing factor 3b, su 90.5 23 0.0005 37.5 16.7 182 21-234 854-1048(1205)
486 PLN02193 nitrile-specifier pro 90.4 20 0.00042 35.4 19.1 202 9-232 228-460 (470)
487 PF08801 Nucleoporin_N: Nup133 90.0 10 0.00022 36.9 14.0 159 61-233 26-218 (422)
488 COG4547 CobT Cobalamin biosynt 89.8 0.54 1.2E-05 43.6 4.6 73 463-535 224-296 (620)
489 TIGR03548 mutarot_permut cycli 89.7 17 0.00037 33.7 18.7 189 9-226 72-314 (323)
490 PRK14131 N-acetylneuraminic ac 89.7 19 0.00042 34.3 22.8 245 75-380 42-375 (376)
491 TIGR03606 non_repeat_PQQ dehyd 89.6 21 0.00045 34.6 19.5 178 135-360 14-246 (454)
492 KOG0262 RNA polymerase I, larg 89.6 0.43 9.3E-06 50.0 4.3 67 471-537 1313-1395(1640)
493 PF05935 Arylsulfotrans: Aryls 89.5 18 0.00038 35.8 15.2 155 71-238 113-305 (477)
494 PF10395 Utp8: Utp8 family; I 89.5 25 0.00054 35.6 15.8 178 61-249 129-320 (670)
495 KOG2141 Protein involved in hi 89.5 0.34 7.4E-06 47.7 3.3 74 463-536 202-275 (822)
496 KOG1983 Tomosyn and related SN 89.5 20 0.00043 39.0 16.4 240 59-382 33-272 (993)
497 KOG1999 RNA polymerase II tran 89.5 0.35 7.5E-06 49.3 3.5 76 453-528 35-110 (1024)
498 PTZ00415 transmission-blocking 89.4 0.27 5.8E-06 53.1 2.8 46 491-536 141-195 (2849)
499 PHA02608 67 prohead core prote 89.3 0.27 5.8E-06 32.6 1.7 35 480-514 46-80 (80)
500 COG4547 CobT Cobalamin biosynt 89.2 0.68 1.5E-05 43.0 4.8 74 457-530 223-296 (620)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-58 Score=386.27 Aligned_cols=320 Identities=19% Similarity=0.252 Sum_probs=287.0
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+-|+|++++||+|+.|.++|+||+.|... .++.++|...|.|++|+|||+.||+|+.+|
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp---------------------~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETP---------------------LFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCc---------------------ceeecCCccEEEEEEECCCcchhhccccCC
Confidence 34677999999999999999999997765 478999999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeec---CCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
+|++|+..+|+++...+.+|...|++|+|.|. +..++||+++.||.|+|||+..+.++.. +.+|+.+|+|+.|--
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~--lsgHT~~VTCvrwGG 257 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT--LSGHTASVTCVRWGG 257 (480)
T ss_pred eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE--eccCccceEEEEEcC
Confidence 99999999999998888999999999999872 3567999999999999999998888766 899999999999987
Q ss_pred CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc-----------CC---------------
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-----------PR--------------- 214 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~--------------- 214 (538)
++ +|++|+.|++|++|+...|.+...++.|. ..|+.++++ |.
T Consensus 258 ~g--liySgS~DrtIkvw~a~dG~~~r~lkGHa----------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 258 EG--LIYSGSQDRTIKVWRALDGKLCRELKGHA----------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred Cc--eEEecCCCceEEEEEccchhHHHhhcccc----------hheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 66 89999999999999999998888877543 267777665 32
Q ss_pred ---------CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeE
Q 009266 215 ---------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (538)
Q Consensus 215 ---------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (538)
++..|++|+.|.++.+|+....+ .+.....+|..-|+.+.|||+++++|+++ +..|
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--------------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEecccccc--------------cchhhhhchhhheeeEEECCCccEEEEeecccce
Confidence 12359999999999999977654 24556667899999999999999999999 6689
Q ss_pred EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC
Q 009266 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
++|+.++ ++.+.+|+||... |+.++| +.+.++|++|+.|
T Consensus 392 kLW~g~t--------------------------------------Gk~lasfRGHv~~--VYqvaw-saDsRLlVS~SkD 430 (480)
T KOG0271|consen 392 KLWDGRT--------------------------------------GKFLASFRGHVAA--VYQVAW-SADSRLLVSGSKD 430 (480)
T ss_pred eeeeCCC--------------------------------------cchhhhhhhccce--eEEEEe-ccCccEEEEcCCC
Confidence 9999998 5677889999987 999999 9999999999999
Q ss_pred CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
.++++|++++.++..-|.+|...|.++.|+|+|+.+++|+.|..+++|.
T Consensus 431 sTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-56 Score=375.44 Aligned_cols=328 Identities=22% Similarity=0.310 Sum_probs=289.7
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
+....+.||.++|.|++|+|+|.+||||+.|.++|+||+.+..++.+. ++|...|.|++|+| +|+.||+|+.+|+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsP--Dgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSP--DGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECC--CcchhhccccCCeEE
Confidence 455678899999999999999999999999999999999999998888 89999999999999 999999999999999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCCC----CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGS----PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
+|+..+++++. ..+.+|...|++++|.|-. ..+|++++.||.|+|||+..+.++..+..| ..+|+
T Consensus 183 lwdpktg~~~g-~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH----------T~~VT 251 (480)
T KOG0271|consen 183 LWDPKTGQQIG-RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH----------TASVT 251 (480)
T ss_pred EecCCCCCccc-ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC----------ccceE
Confidence 99999988765 4599999999999998732 257999999999999999999998888764 44899
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEc-----------CCC---
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-----------DQS--- 273 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----------~~~--- 273 (538)
|+.|--+ .+|++|+.|++|++|+...+++ ...+.+|...|+.++++ |.+
T Consensus 252 CvrwGG~--gliySgS~DrtIkvw~a~dG~~---------------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 252 CVRWGGE--GLIYSGSQDRTIKVWRALDGKL---------------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred EEEEcCC--ceEEecCCCceEEEEEccchhH---------------HHhhcccchheeeeeccchhhhhccccccccccC
Confidence 9999864 5999999999999999998764 34455677778877766 223
Q ss_pred ----------------------CEEEEEcCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcc
Q 009266 274 ----------------------ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (538)
Q Consensus 274 ----------------------~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
..|++++++ ++++|+.... .
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-------------------------------------k 357 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-------------------------------------K 357 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-------------------------------------c
Confidence 359999976 8999996643 4
Q ss_pred cCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceE
Q 009266 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (538)
Q Consensus 331 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~ 410 (538)
+++..+.+|..- |+.+.| ||+++|||+++-|..|++|+..+|+.+.+|++|-++|+.++|+.+.++|++|+.|.+++
T Consensus 358 kpi~rmtgHq~l--Vn~V~f-SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 358 KPITRMTGHQAL--VNHVSF-SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLK 434 (480)
T ss_pred cchhhhhchhhh--eeeEEE-CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEE
Confidence 567788999987 999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcc-cccCccceeeeecc--cCc-eeeeccCCCCCcee
Q 009266 411 ILTPNAADR-ATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYF 450 (538)
Q Consensus 411 vw~~~~~~~-~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~ 450 (538)
||++++.+. ..+++|...|..+. |+| .+++|+.|.-.+.|
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 999999877 67899999999887 888 99999888765554
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-51 Score=349.95 Aligned_cols=291 Identities=22% Similarity=0.309 Sum_probs=263.3
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
.+....-|-..+|..+.|++++..|||||.+|.++||+..+...+.++ .+|...|.++.|+|..++..||||+.||+++
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCcee
Confidence 344445567899999999999999999999999999999999877777 8999999999999932367999999999999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
+|++.+...+.. +.+|...|..++|+|+| ++|+|++.|.+-++||++++..+..... |...|.+++|
T Consensus 245 lw~~~~e~~l~~--l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEG----------Hs~~v~~iaf 311 (459)
T KOG0272|consen 245 LWKLSQETPLQD--LEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEG----------HSKGVFSIAF 311 (459)
T ss_pred eeccCCCcchhh--hhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcc----------cccccceeEe
Confidence 999998777766 89999999999999999 7999999999999999999987766554 3448999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeecc
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (538)
+|+ |.++++|+.|..-+|||+|+++. ..++.+|..+|.+++|+|+|..||+|+ +++++|||++
T Consensus 312 ~~D-GSL~~tGGlD~~~RvWDlRtgr~---------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 312 QPD-GSLAATGGLDSLGRVWDLRTGRC---------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred cCC-CceeeccCccchhheeecccCcE---------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 998 79999999999999999999873 344556899999999999999999999 5699999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC-CCcEEEEeccCCeEEE
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFI 369 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~~gs~dg~i~i 369 (538)
. +..+.++.+|.+- |..|+| +| .|.+|++++.|++++|
T Consensus 376 ~--------------------------------------r~~ly~ipAH~nl--VS~Vk~-~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 376 M--------------------------------------RSELYTIPAHSNL--VSQVKY-SPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred c--------------------------------------cccceecccccch--hhheEe-cccCCeEEEEcccCcceee
Confidence 7 5567888999997 999999 88 8899999999999999
Q ss_pred eeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
|...++.+++++.||.+.|.++.++|++.+|+|++.|.++++|.
T Consensus 415 Ws~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 415 WSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999996
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.7e-49 Score=337.15 Aligned_cols=276 Identities=21% Similarity=0.284 Sum_probs=253.4
Q ss_pred CCCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC--CCEEEEe
Q 009266 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISG 79 (538)
Q Consensus 2 ~~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~t~ 79 (538)
-.|+|+++++.||||+-+|.++||+..++.. +++|+||...|.++.|+|. +..||||
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~---------------------~~~l~gH~~~v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---------------------LQTLRGHTSRVGAAVFHPVDSDLNLATA 237 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcce---------------------eEEEeccccceeeEEEccCCCccceeee
Confidence 3589999999999999999999999997765 4789999999999999996 6799999
Q ss_pred cCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 80 ~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
+.||++++|++.+..++..+ .+|...|..++|+| +|++|+|++.|.+-++||+.++..+.. ..+|...|.+|+|+
T Consensus 238 s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~--QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 238 SADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLL--QEGHSKGVFSIAFQ 312 (459)
T ss_pred ccCCceeeeccCCCcchhhh-hcchhhheeeeecC--CCceeeecccccchhhcccccchhhHh--hcccccccceeEec
Confidence 99999999999988888887 89999999999999 999999999999999999999888766 88999999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcccc
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (538)
|+| .+++||+.|..-+|||++++.++..+..|. .+|.+++|+|+ |..||+|+.|++++|||++..+.
T Consensus 313 ~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~----------k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~- 379 (459)
T KOG0272|consen 313 PDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHI----------KEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSE- 379 (459)
T ss_pred CCC-ceeeccCccchhheeecccCcEEEEecccc----------cceeeEeECCC-ceEEeecCCCCcEEEeeeccccc-
Confidence 999 799999999999999999999999888643 38999999996 89999999999999999998753
Q ss_pred CCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCc
Q 009266 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (538)
..++..|..-|+.+.|+| .|.+|++++ +++++||...+
T Consensus 380 --------------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-------------------------- 419 (459)
T KOG0272|consen 380 --------------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-------------------------- 419 (459)
T ss_pred --------------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--------------------------
Confidence 455667889999999999 789999999 66999999887
Q ss_pred cccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
..+++.+.||... |.++.+ +|++.+|++++.|.+|++|.
T Consensus 420 ------------~~~~ksLaGHe~k--V~s~Di-s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 ------------WSPLKSLAGHEGK--VISLDI-SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ------------cccchhhcCCccc--eEEEEe-ccCCceEEEeccCceeeecc
Confidence 6678999999998 999999 99999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-46 Score=304.43 Aligned_cols=297 Identities=18% Similarity=0.290 Sum_probs=262.2
Q ss_pred eEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 48 VLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 48 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
.++++..++|+||.+.|.++.|+++.++|+++|.||.+.|||.-+...++.+ +-....|..++|+| .|+++|+|+.|
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sP--Sg~~VAcGGLd 118 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSP--SGNFVACGGLD 118 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECC--CCCeEEecCcC
Confidence 4667888999999999999999999999999999999999999888877776 56778999999999 99999999999
Q ss_pred CcEEEeecccC--c--eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 128 GQVRHAQILER--G--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 128 g~v~vwd~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
+...||++.+. . ....+.+.+|++.+.|+.|.+++ .|+|++.|.++.+||+++++.+..|.. |.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~G----------H~ 186 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHG----------HT 186 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecC----------Cc
Confidence 99999999855 2 23345589999999999999976 589999999999999999999999886 44
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE- 282 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~- 282 (538)
+.|.++.++|.+++.|++|+-|+..+|||+|.+.. .+.+.+|..-|++++|.|+|.-+++|+++
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---------------~qtF~ghesDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---------------VQTFEGHESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcce---------------eEeecccccccceEEEccCCCeeeecCCCc
Confidence 58999999996589999999999999999999752 34455689999999999999999999965
Q ss_pred eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec
Q 009266 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (538)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs 362 (538)
+.++||++... .+..|........|++|+| |..|++|++|.
T Consensus 252 tcRlyDlRaD~--------------------------------------~~a~ys~~~~~~gitSv~F-S~SGRlLfagy 292 (343)
T KOG0286|consen 252 TCRLYDLRADQ--------------------------------------ELAVYSHDSIICGITSVAF-SKSGRLLFAGY 292 (343)
T ss_pred eeEEEeecCCc--------------------------------------EEeeeccCcccCCceeEEE-cccccEEEeee
Confidence 89999998743 3344443333334999999 99999999999
Q ss_pred cCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
.|.++.+||.-.++.+..|.+|.+.|.+|..+|+|..|+||+.|.+||||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999995
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.1e-46 Score=296.18 Aligned_cols=293 Identities=15% Similarity=0.248 Sum_probs=254.6
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCc
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v 153 (538)
-+|+|+|.|.+||+|...+|.+..++ ....+.|+.+...| ++++||+++. ..||+||++++...+...+.+|+..|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence 58999999999999999999999998 45567899999999 9999999886 57999999998887777899999999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 009266 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 233 (538)
+++.|..+| +.+++|+.||+++|||++...+.+.+. +.++|+++..+|. ..-|++|..+|.|++||+
T Consensus 87 taVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-----------~~spVn~vvlhpn-QteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 87 TAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------HNSPVNTVVLHPN-QTELISGDQSGNIRVWDL 153 (311)
T ss_pred EEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-----------CCCCcceEEecCC-cceEEeecCCCcEEEEEc
Confidence 999999999 799999999999999999977766666 5568999999997 778999999999999999
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
+... |...+.......|.+++..|+|.+|+++. .|+.++|++-+......
T Consensus 154 ~~~~--------------c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~--------------- 204 (311)
T KOG0315|consen 154 GENS--------------CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE--------------- 204 (311)
T ss_pred cCCc--------------cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc---------------
Confidence 9865 33344444567899999999999999888 66999999877433322
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc-ceeEEeecCcceeeEE
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCI 391 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~ 391 (538)
..++..++.|... +..+.+ ||+++|||++|.|.+++||++.+. +...++.+|...+..+
T Consensus 205 -----------------l~P~~k~~ah~~~--il~C~l-SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc 264 (311)
T KOG0315|consen 205 -----------------LEPVHKFQAHNGH--ILRCLL-SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC 264 (311)
T ss_pred -----------------ceEhhheecccce--EEEEEE-CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee
Confidence 4466778899886 889998 999999999999999999999888 7778899999999999
Q ss_pred eecCCCCeEEEeecCCceEEecCCCCcc-cccCccceeeeec
Q 009266 392 EPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVLIP 432 (538)
Q Consensus 392 ~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~ 432 (538)
+||.+|+||+||+.|+.+++|++..++. ....+|.....++
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCV 306 (311)
T ss_pred eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEE
Confidence 9999999999999999999999998864 6677777665443
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-46 Score=341.00 Aligned_cols=371 Identities=17% Similarity=0.200 Sum_probs=302.7
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCC--CEEEEecCCC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG--DILISGSDDR 83 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~t~~~d~ 83 (538)
+.|.+.+|++|+.|+.|+|||+..+.+. +.|+||.+.|.++.|+|+- ..|++|..|+
T Consensus 113 ~~~~g~LlAtggaD~~v~VWdi~~~~~t---------------------h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 113 FDPTGTLLATGGADGRVKVWDIKNGYCT---------------------HSFKGHGGVVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred EcCCCceEEeccccceEEEEEeeCCEEE---------------------EEecCCCceEEEEEeCCccchhheeecCCCc
Confidence 3456689999999999999999977774 7899999999999999964 4689999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee----------------------
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV---------------------- 141 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~---------------------- 141 (538)
+|++||+.+..........|.+.|++++|++ ++..+++++.|..|.||++.+.+..
T Consensus 172 ~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~ 249 (775)
T KOG0319|consen 172 TVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGK 249 (775)
T ss_pred eEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCc
Confidence 9999999977663334489999999999999 8888888888888888887331110
Q ss_pred --------------------------------------------------------------------------------
Q 009266 142 -------------------------------------------------------------------------------- 141 (538)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (538)
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence
Q ss_pred ---------------------------eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeeccc
Q 009266 142 ---------------------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (538)
Q Consensus 142 ---------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (538)
....+.+|+..|.++.....| -+|+||+.|.++++|.++.+........
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a--- 405 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVA--- 405 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhh---
Confidence 001123488888888866666 6899999999999998854433221110
Q ss_pred CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC
Q 009266 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (538)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (538)
...+ |...|.+++++..+..+|++++.|++|++|+++..+.... ...+........|...|++++++|+.+
T Consensus 406 -~~~g--H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~------~~~~~~~~t~~aHdKdIN~Vaia~ndk 476 (775)
T KOG0319|consen 406 -QANG--HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF------PIVLTCRYTERAHDKDINCVAIAPNDK 476 (775)
T ss_pred -hhcc--cccccceeeecccCccEEEEecCCceEEEecCCCcccccc------cceehhhHHHHhhcccccceEecCCCc
Confidence 1112 5558999999887778999999999999999988332111 111122334456889999999999999
Q ss_pred EEEEEcCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC
Q 009266 275 LLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (538)
Q Consensus 275 ~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~ 353 (538)
++|+|+.+ +.+||++.. .....++.||+.. |++|.| +|
T Consensus 477 LiAT~SqDktaKiW~le~--------------------------------------~~l~~vLsGH~RG--vw~V~F-s~ 515 (775)
T KOG0319|consen 477 LIATGSQDKTAKIWDLEQ--------------------------------------LRLLGVLSGHTRG--VWCVSF-SK 515 (775)
T ss_pred eEEecccccceeeecccC--------------------------------------ceEEEEeeCCccc--eEEEEe-cc
Confidence 99999955 899999985 5677899999998 999999 99
Q ss_pred CCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc-cccCccceeeeec
Q 009266 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVLIP 432 (538)
Q Consensus 354 ~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~ 432 (538)
..+.||++|.|++|+||.+.+..++++|.||...|..+.|-.+++.|+||+.||.|++|++++.++ .++..|..+++.+
T Consensus 516 ~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 516 NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999988 6788999999988
Q ss_pred c--cCc-eeeeccCCCCCceeecc
Q 009266 433 D--HIR-WFALGDDDDGDYYFYDI 453 (538)
Q Consensus 433 ~--~~~-~l~s~~~d~~~~~~~~~ 453 (538)
. +.. ++++|+.|+....|-+.
T Consensus 596 ~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 596 SVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eecCccceeEecCCCeEEEEeecC
Confidence 7 444 89999999988877544
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.2e-43 Score=306.71 Aligned_cols=416 Identities=14% Similarity=0.161 Sum_probs=312.7
Q ss_pred CCCCCCCceEEeeccCCceEEeeecc-Cceecccc---------------------------------------------
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLREL-GQLSTRNF--------------------------------------------- 37 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~-g~~~~~~~--------------------------------------------- 37 (538)
|=|+|.|-++|+|...|.||||+... ..+++..|
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~ 144 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT 144 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee
Confidence 45789999999999999999999876 33333311
Q ss_pred ----------------chhhcccccceEEe------eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 009266 38 ----------------ALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV 95 (538)
Q Consensus 38 ----------------~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~ 95 (538)
.++++++.+..+.+ +...+++.|..-|+|++|+|+|.++||++.||+|.|||-.+|+.
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 11566667766655 66677889999999999999999999999999999999999998
Q ss_pred eeeec--cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeecccc-CCCcEEEEEcCCCCcEEEEEcCC
Q 009266 96 KLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-QGRAHKLAIEPGSPHVFYTCGED 172 (538)
Q Consensus 96 ~~~~~--~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d 172 (538)
+..+. .+|.+.|++|+|+| |+..|++++.|.+++||++.+.+.+.+..+... ......+.|.. ..|++.+.+
T Consensus 225 vg~l~~~~aHkGsIfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk---d~lItVSl~ 299 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK---DHLITVSLS 299 (603)
T ss_pred EEEecCCCCccccEEEEEECC--CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC---CeEEEEEcC
Confidence 87772 38999999999999 999999999999999999999988776444332 12233444552 358999999
Q ss_pred CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccC
Q 009266 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (538)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 252 (538)
|+|.+++.........+..|. ..|++++.+|+ +.+|++|+.||.|.-|+..++..
T Consensus 300 G~in~ln~~d~~~~~~i~GHn----------K~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~-------------- 354 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHN----------KSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTS-------------- 354 (603)
T ss_pred cEEEEecccCCChhheecccc----------cceeEEEEcCC-CCEEEeeccCceEEEEecCCccc--------------
Confidence 999999999988777777643 48999999998 69999999999999999998752
Q ss_pred CCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccC
Q 009266 253 PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (538)
Q Consensus 253 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
-+..-..|...|.+++.+..+.++.++-++++++.++.......... ......+...+..+++..+.+.........+-
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV-VKLGSQPKGLAVLSDGGTAVVACISDIVLLQD 433 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce-eecCCCceeEEEcCCCCEEEEEecCcEEEEec
Confidence 22233457889999999998988888889999999885433222110 01111112222233322222221111111110
Q ss_pred CceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCccee--EEeecCcceeeEEeecCCCCeEEEeecCCceE
Q 009266 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI--RVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (538)
Q Consensus 333 ~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~ 410 (538)
........-.....++++ +|+++++|.|+.|++|+||.+....+. ..+..|.++|+++++||++.+||+|...+.|.
T Consensus 434 ~~~~~~~~~~y~~s~vAv-~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 434 QTKVSSIPIGYESSAVAV-SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred CCcceeeccccccceEEE-cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE
Confidence 111111111112567887 999999999999999999999876543 45667999999999999999999999999999
Q ss_pred EecCCCCcc--cccCccceeeeecc--cCc-eeeeccCCCCCceee
Q 009266 411 ILTPNAADR--ATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYFY 451 (538)
Q Consensus 411 vw~~~~~~~--~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~~ 451 (538)
+|++.+.+. ....-|..+|..++ |+. ++++||-|-..++|.
T Consensus 513 ~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 513 LYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 999998866 34556999999888 777 999999999888884
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-43 Score=283.33 Aligned_cols=297 Identities=16% Similarity=0.246 Sum_probs=254.7
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
.-+|++++.|.+||+|...+|.+. ++++.....|+.|.+.|+++.||+++. ..||+||
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~---------------------rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD 67 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICS---------------------RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYD 67 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEE---------------------EEEecCccceeeEEEcCCcchhhhccC-CeeEEEE
Confidence 356999999999999999999985 667766789999999999999999886 5799999
Q ss_pred CCCCce--eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEE
Q 009266 90 WKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (538)
Q Consensus 90 ~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (538)
+.+++. +.++ .+|+..|+++.|.. +|+++++|+.||+++||+++...+.. ...|..+|+++..+|+. .-|+
T Consensus 68 ~~S~np~Pv~t~-e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR---~~~~~spVn~vvlhpnQ-teLi 140 (311)
T KOG0315|consen 68 LNSNNPNPVATF-EGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQR---NYQHNSPVNTVVLHPNQ-TELI 140 (311)
T ss_pred ccCCCCCceeEE-eccCCceEEEEEee--cCeEEEecCCCceEEEEeccCcccch---hccCCCCcceEEecCCc-ceEE
Confidence 998765 5666 89999999999999 99999999999999999999855543 44578999999999988 5789
Q ss_pred EEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCC
Q 009266 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (538)
Q Consensus 168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 247 (538)
+|..+|.|++||+.+..+...+... ....|.+++..|+ |.+++.+...|..++|++-..+.
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe---------~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~--------- 201 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPE---------DDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQT--------- 201 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCC---------CCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCc---------
Confidence 9999999999999988776655432 2237999999998 78999999999999999987442
Q ss_pred CcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 009266 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
...+.|...+..|.+.+..+.+||++++||+++. .+++||++...
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---------------------------------- 247 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---------------------------------- 247 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc----------------------------------
Confidence 2223455566778999999999999999999985 48999998873
Q ss_pred CCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeec
Q 009266 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 394 (538)
.+....+.+|... ++.++| |.+|+||++|+.|+.+++|++..++.++.+.+|..+..|++..
T Consensus 248 ---~kle~~l~gh~rW--vWdc~F-S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 ---FKLELVLTGHQRW--VWDCAF-SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ---eeeEEEeecCCce--EEeeee-ccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 2455778889876 999999 9999999999999999999999999999999999888777753
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-43 Score=322.56 Aligned_cols=405 Identities=18% Similarity=0.209 Sum_probs=309.9
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcC-CcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-.|+.++|+++++.+.+++|.+.+|+++ +.++. |+++|..++|+|.|..|++|+.|+.
T Consensus 70 l~~d~~~L~~a~rs~llrv~~L~tgk~i---------------------rswKa~He~Pvi~ma~~~~g~LlAtggaD~~ 128 (775)
T KOG0319|consen 70 LTPDEEVLVTASRSQLLRVWSLPTGKLI---------------------RSWKAIHEAPVITMAFDPTGTLLATGGADGR 128 (775)
T ss_pred ecCCccEEEEeeccceEEEEEcccchHh---------------------HhHhhccCCCeEEEEEcCCCceEEeccccce
Confidence 3578999999999999999999999875 55666 9999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|++||+..+.+.+.+ ++|.+.|.++.|+|...-..|++|..|++|++||+..... ....+..|.+.|++++|.+++ .
T Consensus 129 v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~-~ 205 (775)
T KOG0319|consen 129 VKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDS-L 205 (775)
T ss_pred EEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCC-c
Confidence 999999999999988 8999999999999954556789999999999999986554 334478899999999999998 6
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC--C--CcEEEEEeCCCeEEEEEcCCccccC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR--N--ANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~--~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
.+++++.|..|.|||+.+.+...+++..+ .+-++.+-+. + +.++++++..|.+++|+..+++...
T Consensus 206 ~~ls~~RDkvi~vwd~~~~~~l~~lp~ye-----------~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~ 274 (775)
T KOG0319|consen 206 ELLSVGRDKVIIVWDLVQYKKLKTLPLYE-----------SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVY 274 (775)
T ss_pred eEEEeccCcEEEEeehhhhhhhheechhh-----------heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhh
Confidence 88999999999999997777666655332 3555665553 1 3589999999999999988765432
Q ss_pred CCCCC------C------------------------------------------------------------CCccc---
Q 009266 241 STDFG------Q------------------------------------------------------------PADYF--- 251 (538)
Q Consensus 241 ~~~~~------~------------------------------------------------------------~~~~~--- 251 (538)
..... . .+..+
T Consensus 275 ~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~ 354 (775)
T KOG0319|consen 275 KQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLP 354 (775)
T ss_pred hhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecC
Confidence 11100 0 00000
Q ss_pred -CCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCC----CCCCCccccccccccCCC-CccccCCCC
Q 009266 252 -CPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP----PPSSPVSTRSEASEMGSD-HTSAASPST 324 (538)
Q Consensus 252 -~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 324 (538)
.-..+..+|...|.++....+|-+|++++ +.++++|.+..+..... ...+.......+. +.. ...++..+.
T Consensus 355 ~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffvsvS~ 432 (775)
T KOG0319|consen 355 TSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFVSVSQ 432 (775)
T ss_pred CCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee--cccCccEEEEecC
Confidence 00114556788888998777888999999 55899998844332211 1222222222222 111 122222222
Q ss_pred CCCCc---------------ccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceee
Q 009266 325 ANTDV---------------RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN 389 (538)
Q Consensus 325 ~~~~~---------------~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~ 389 (538)
+.+.+ .....+...|... |++|++ +|+.++|||||.|.+.+||++....++.+|.+|...|.
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd--IN~Vai-a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw 509 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD--INCVAI-APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVW 509 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhccc--ccceEe-cCCCceEEecccccceeeecccCceEEEEeeCCccceE
Confidence 22211 1111123445555 999999 99999999999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEeecCCceEEecCCCCcc-cccCccceeeeecc---cCceeeeccCCCCCcee
Q 009266 390 CIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVLIPD---HIRWFALGDDDDGDYYF 450 (538)
Q Consensus 390 ~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~---~~~~l~s~~~d~~~~~~ 450 (538)
++.|+|..+.|||+|.|++|+||.+.+..+ .++.+|...|..+. .+..|+|++.+|-...|
T Consensus 510 ~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 510 CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 999999999999999999999999999987 67888999988766 55599999999977777
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.9e-43 Score=286.87 Aligned_cols=295 Identities=20% Similarity=0.354 Sum_probs=257.1
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
.+...+.+|++.|..+.|+|+|.+||||+.|..|.||++.....-.-.+++|.+.|..+.|.+ ++..|++++.|.+|+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEecCCceEE
Confidence 456778999999999999999999999999999999997543332333479999999999999 999999999999999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
.||+++++++.. +++|..-|+.+..+.-|+.++.+++.|+++++||+++...++++. ...+++++.|
T Consensus 116 ~wD~~tG~~~rk--~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-----------~kyqltAv~f 182 (338)
T KOG0265|consen 116 GWDAETGKRIRK--HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-----------NKYQLTAVGF 182 (338)
T ss_pred EEecccceeeeh--hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-----------cceeEEEEEe
Confidence 999999998877 889999999999877888899999999999999999999988886 3447999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeecc
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (538)
... +..+.+|+-|+.|++||++.... .....+|...|+.+..+|.|.++.+-+ +.++++|+++
T Consensus 183 ~d~-s~qv~sggIdn~ikvWd~r~~d~---------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 183 KDT-SDQVISGGIDNDIKVWDLRKNDG---------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred ccc-ccceeeccccCceeeeccccCcc---------------eEEeecccCceeeEEeccCCCccccccccceEEEEEec
Confidence 987 78999999999999999998752 455667899999999999999999988 6799999987
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccc--eeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC--VTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
--.+. .++++.+.+|... .....++| +|+++++.+|+.|..++
T Consensus 247 p~~p~----------------------------------~R~v~if~g~~hnfeknlL~csw-sp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 247 PFAPS----------------------------------QRCVKIFQGHIHNFEKNLLKCSW-SPNGTKITAGSADRFVY 291 (338)
T ss_pred ccCCC----------------------------------CceEEEeecchhhhhhhcceeec-cCCCCccccccccceEE
Confidence 53211 3346667765432 23667788 99999999999999999
Q ss_pred EeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
+|+......+..+++|.+.|++++|+|..++|.+++.|++|++=
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999999999999999999999999999999999999863
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-42 Score=277.40 Aligned_cols=291 Identities=13% Similarity=0.210 Sum_probs=240.1
Q ss_pred eeeeEEcCCcCcEEEEEEcCC-CCEEEEecCCCeEEEEECCC-----CceeeeeccCCCCCeEEEEEeecCCCceEEEEe
Q 009266 52 GIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT-----ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
.+..++++|.+.|+.++..+. ...|++++.|.+|.+|++.. |.+++.+ .+|...|..++.++ +|++.++++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~--dg~~alS~s 82 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSS--DGNFALSAS 82 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEcc--CCceEEecc
Confidence 346789999999999999986 57889999999999998753 5556666 89999999999999 999999999
Q ss_pred CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeee
Q 009266 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
.|+++++||+.+++.... |.+|...|.+++|+|+. ..+++|+.|.+|++|++...... ++.... +...
T Consensus 83 wD~~lrlWDl~~g~~t~~--f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~-t~~~~~--------~~~W 150 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRR--FVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY-TIHEDS--------HREW 150 (315)
T ss_pred ccceEEEEEecCCcEEEE--EEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEE-EEecCC--------CcCc
Confidence 999999999999866554 89999999999999999 67999999999999998765433 332111 2458
Q ss_pred eEEEEEcCCC-CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCe
Q 009266 206 LNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (538)
Q Consensus 206 v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~ 283 (538)
|.|++|+|.. ..+|++++.|++|++||+++.++ .....+|...++.+++||+|.++++|+ ++.
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---------------hhccccccccEEEEEECCCCCEEecCCCCce
Confidence 9999999973 46899999999999999998763 445556899999999999999999998 569
Q ss_pred EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc
Q 009266 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (538)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~ 363 (538)
+.+||++.++ .+..+. |.. .|.+++| +|+.-+|+.+.
T Consensus 216 ~~LwdL~~~k--------------------------------------~lysl~-a~~--~v~sl~f-spnrywL~~at- 252 (315)
T KOG0279|consen 216 AMLWDLNEGK--------------------------------------NLYSLE-AFD--IVNSLCF-SPNRYWLCAAT- 252 (315)
T ss_pred EEEEEccCCc--------------------------------------eeEecc-CCC--eEeeEEe-cCCceeEeecc-
Confidence 9999998742 233333 233 3999999 99876666655
Q ss_pred CCeEEEeeccCcceeEEeec----C-----cceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 364 CGRIFIWKKKGGELIRVIEA----D-----RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
+..|+||++.++.++..++. . .....+++|+++|..|++|-.|+.|++|.+.
T Consensus 253 ~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 45599999999988876642 1 2245788999999999999999999999875
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-41 Score=276.58 Aligned_cols=289 Identities=18% Similarity=0.209 Sum_probs=237.1
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
.+.+...|+++++|.++.+|++..... ..-.+++.++||...|..++.+++|++.++++.|+++
T Consensus 24 ~~~~~~~l~sasrDk~ii~W~L~~dd~----------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 24 KIKNSDILVSASRDKTIIVWKLTSDDI----------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred ecCCCceEEEcccceEEEEEEeccCcc----------------ccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 345677899999999999999984422 1224578999999999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC-Cc
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PH 164 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 164 (538)
++||+.+++..++| .+|...|.+++|+| +...+++|+.|.+|++|++... +..+..-..+...|.|+.|+|+. ..
T Consensus 88 rlWDl~~g~~t~~f-~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 88 RLWDLATGESTRRF-VGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEecCCcEEEEE-EecCCceEEEEecC--CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999999887877 89999999999999 9999999999999999998754 44433333448899999999983 35
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (538)
+|++++.|++|++||+++-+....+.. +...++.++++|+ |.++++|+.+|.+.+||++.++..
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~g----------h~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~l----- 227 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIG----------HSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNL----- 227 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhcccc----------ccccEEEEEECCC-CCEEecCCCCceEEEEEccCCcee-----
Confidence 899999999999999999887777665 3448999999998 799999999999999999988632
Q ss_pred CCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
....+...|.+++|+|+..+|+.+....|+||++.+......+.....
T Consensus 228 -----------ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~--------------------- 275 (315)
T KOG0279|consen 228 -----------YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGI--------------------- 275 (315)
T ss_pred -----------EeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccc---------------------
Confidence 222357789999999999999999988999999998765554331110
Q ss_pred CCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
.. ..........+++| +++|..|++|-.++.|++|.+.
T Consensus 276 ---------g~-s~~~~~~~clslaw-s~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 276 ---------GP-SSKAGDPICLSLAW-SADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ---------cc-ccccCCcEEEEEEE-cCCCcEEEeeecCCcEEEEEee
Confidence 00 01111223778898 9999999999999999999874
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-42 Score=315.44 Aligned_cols=392 Identities=16% Similarity=0.220 Sum_probs=324.0
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
+.+|+..+||.|..||.|+||+..++..+ .++.||+.+|+++.|...|.+||+||.|+.
T Consensus 72 ~~~~d~l~lAVGYaDGsVqif~~~s~~~~---------------------~tfngHK~AVt~l~fd~~G~rlaSGskDt~ 130 (888)
T KOG0306|consen 72 RSSDDILLLAVGYADGSVQIFSLESEEIL---------------------ITFNGHKAAVTTLKFDKIGTRLASGSKDTD 130 (888)
T ss_pred eccCCcceEEEEecCceEEeeccCCCcee---------------------eeecccccceEEEEEcccCceEeecCCCcc
Confidence 45688888999999999999999977553 679999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee--------------------
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-------------------- 144 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-------------------- 144 (538)
|.+||+-...-+.++ .+|+..|+.+-|.. +.++|++++.|+.|++||+.+..+..++
T Consensus 131 IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~ 207 (888)
T KOG0306|consen 131 IIVWDLVGEEGLFRL-RGHKDSITQALFLN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTA 207 (888)
T ss_pred EEEEEeccceeeEEe-ecchHHHhHHhccC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEE
Confidence 999999876666666 89999999999987 7899999999999999999765443110
Q ss_pred --------------------------------------------------------------------------------
Q 009266 145 -------------------------------------------------------------------------------- 144 (538)
Q Consensus 145 -------------------------------------------------------------------------------- 144 (538)
T Consensus 208 ~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~ 287 (888)
T KOG0306|consen 208 GTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL 287 (888)
T ss_pred ecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 009266 145 -------------------------------------------------------------------------------- 144 (538)
Q Consensus 145 -------------------------------------------------------------------------------- 144 (538)
T Consensus 288 k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i 367 (888)
T KOG0306|consen 288 KRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI 367 (888)
T ss_pred HHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee
Confidence
Q ss_pred eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC
Q 009266 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 224 (538)
.+.+|...|++++++.+. .++++| ..+.|++|+..+.+++.++.+. .+.+..|.|. .+++++|..
T Consensus 368 ~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~kciRTi~~~------------y~l~~~Fvpg-d~~Iv~G~k 432 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLKCIRTITCG------------YILASKFVPG-DRYIVLGTK 432 (888)
T ss_pred eeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccCcceeEEeccc------------cEEEEEecCC-CceEEEecc
Confidence 112277778888888876 344444 4578999999999999888743 5788999995 799999999
Q ss_pred CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCC-----CCCC
Q 009266 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG-----PNPP 298 (538)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~-----~~~~ 298 (538)
.|.+.+||+.+..+ ......|.+.|.+++.+|+++.+++++ +.+|++|+..--.. ...+
T Consensus 433 ~Gel~vfdlaS~~l---------------~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 433 NGELQVFDLASASL---------------VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred CCceEEEEeehhhh---------------hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee
Confidence 99999999998754 334457899999999999999999998 55899999753221 1101
Q ss_pred C-----CCCccccccccccCCCCccccCCCCCCCCc------ccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeE
Q 009266 299 P-----SSPVSTRSEASEMGSDHTSAASPSTANTDV------RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (538)
Q Consensus 299 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i 367 (538)
. .-.......+..++|+++.+++...+++.+ .+....+.||.-+ |.++.. ||++++++|||.|.+|
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP--V~smDI-S~DSklivTgSADKnV 574 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNV 574 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc--eeEEec-cCCcCeEEeccCCCce
Confidence 1 111223456777899999999888777644 3455677899987 999998 9999999999999999
Q ss_pred EEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCc-ccccCccceeeeecc--cCc-eeeeccC
Q 009266 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD-RATLPTNIEQVLIPD--HIR-WFALGDD 443 (538)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~--~~~-~l~s~~~ 443 (538)
+||-+.-|.|-+.+.+|...|.++.|.|...++.|||.|+.|+-||-..-+ ...+.+|...+++++ |.| +++++|.
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 999999999999999999999999999999999999999999999987654 478999999999887 777 9999999
Q ss_pred CCCCceeecc
Q 009266 444 DDGDYYFYDI 453 (538)
Q Consensus 444 d~~~~~~~~~ 453 (538)
|.+...|...
T Consensus 655 D~sIRlwE~t 664 (888)
T KOG0306|consen 655 DKSIRLWERT 664 (888)
T ss_pred CceeEeeecc
Confidence 9988888543
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.3e-43 Score=307.62 Aligned_cols=295 Identities=19% Similarity=0.289 Sum_probs=259.0
Q ss_pred eeeeEEcCCcCcEEEEEEcC-CCCEEEEecCCCeEEEEECCC-CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCc
Q 009266 52 GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~-~g~~l~t~~~d~~i~iw~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~ 129 (538)
+.++++.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++++ .+|..+|..++|++ +|..+++++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~--~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNN--CGTSFLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccc--cCCeeeeeeccee
Confidence 67889999999999999999 899999999999999999977 7777777 89999999999999 9999999999999
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
|++||+++++++.... ....++|+.|+|+++++|++|+.++.|+.||+++++.++.+.. +.+.|..+
T Consensus 282 lKlwDtETG~~~~~f~---~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----------hLg~i~~i 348 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH---LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----------HLGAILDI 348 (503)
T ss_pred eeeeccccceEEEEEe---cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------hhhheeee
Confidence 9999999999887632 3356899999999989999999999999999999998887764 44489999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEee
Q 009266 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (538)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d 288 (538)
.|-+. ++.+++++.++.|+||+.+..... ......+...+.++..+|++.++++-+ ++.|.+|.
T Consensus 349 ~F~~~-g~rFissSDdks~riWe~~~~v~i--------------k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 349 TFVDE-GRRFISSSDDKSVRIWENRIPVPI--------------KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred EEccC-CceEeeeccCccEEEEEcCCCccc--------------hhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 99997 799999999999999999876422 222233345678999999999999988 66899998
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
+....+ ....+.+.+|.....-..|.| ||+|++|++|..+|.+.
T Consensus 414 ~~~~~r-----------------------------------~nkkK~feGh~vaGys~~v~f-SpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 414 TVPPFR-----------------------------------LNKKKRFEGHSVAGYSCQVDF-SPDGRTLCSGDSDGKVN 457 (503)
T ss_pred cccccc-----------------------------------cCHhhhhcceeccCceeeEEE-cCCCCeEEeecCCccEE
Confidence 654311 445678899988877889998 99999999999999999
Q ss_pred EeeccCcceeEEeecCcceeeEEeecCCCC-eEEEeecCCceEEec
Q 009266 369 IWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILT 413 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~ 413 (538)
+|+.++.+++..+++|.+++..+.|+|... .||||+.+|.|++|+
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999876 899999999999996
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-40 Score=292.01 Aligned_cols=369 Identities=14% Similarity=0.260 Sum_probs=287.8
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEc---CCcCcEEEEEEcCCCCEEEEecC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD---KHRGCVNTVSFNTDGDILISGSD 81 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~~g~~l~t~~~ 81 (538)
=|+|++.+++|++.||.|.|||-.+|+.+ ..|. +|++.|.+|+|+||++.|+|+|.
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~v---------------------g~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEKV---------------------GELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccEE---------------------EEecCCCCccccEEEEEECCCCceEEEecC
Confidence 37899999999999999999999999985 3444 89999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCCC--CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 82 DRRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
|.++|||++.+.+++.++..+.. ..-..+.| ....|++.+..|+|.+++......+. .+.+|...|+++..+
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW----qkd~lItVSl~G~in~ln~~d~~~~~--~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW----QKDHLITVSLSGTINYLNPSDPSVLK--VISGHNKSITALTVS 329 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEE----eCCeEEEEEcCcEEEEecccCCChhh--eecccccceeEEEEc
Confidence 99999999999999888855444 23333445 45789999999999999998887444 489999999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcccc
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (538)
|++ .+|++|+.||.|.-|+..++..-.... ..|...|.+++-+.. ..+++.+.|.+|++.++......
T Consensus 330 ~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g---------~~h~nqI~~~~~~~~--~~~~t~g~Dd~l~~~~~~~~~~t 397 (603)
T KOG0318|consen 330 PDG-KTIYSGSYDGHINSWDSGSGTSDRLAG---------KGHTNQIKGMAASES--GELFTIGWDDTLRVISLKDNGYT 397 (603)
T ss_pred CCC-CEEEeeccCceEEEEecCCcccccccc---------ccccceEEEEeecCC--CcEEEEecCCeEEEEecccCccc
Confidence 999 799999999999999999887654431 115558999998863 46788899999999988655443
Q ss_pred CCC--CCC-CCCcc-----------cCCC--Ccc--------CCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCC
Q 009266 240 GST--DFG-QPADY-----------FCPP--NLI--------GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (538)
Q Consensus 240 ~~~--~~~-~~~~~-----------~~~~--~~~--------~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~ 294 (538)
... .++ +|... .|.. .++ ..-.....+++++|++..+++|+ +++|+||.+.....
T Consensus 398 ~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 398 KSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred ccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc
Confidence 331 111 11100 0000 000 01123467889999999999888 56899999876421
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccC
Q 009266 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~ 374 (538)
.....+..|..+ |+.++| ||++.|||+|...+.|.+|++.+
T Consensus 478 ------------------------------------~ee~~~~~h~a~--iT~vay-Spd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 478 ------------------------------------KEEAKLLEHRAA--ITDVAY-SPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred ------------------------------------cceeeeecccCC--ceEEEE-CCCCcEEEEeccCCcEEEEEccc
Confidence 223345667776 999999 99999999999999999999998
Q ss_pred ccee-EEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc--ccCccceeeeecc--cCceeeeccCCCCCce
Q 009266 375 GELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA--TLPTNIEQVLIPD--HIRWFALGDDDDGDYY 449 (538)
Q Consensus 375 ~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~--~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~ 449 (538)
.+.. ..+.-|...|++|+|+|+..+||||+.|.+|.||++..+... ..-.|...+..+. ....+++.+.|.....
T Consensus 519 ~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~ 598 (603)
T KOG0318|consen 519 REVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKV 598 (603)
T ss_pred CceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEE
Confidence 8774 334459999999999999999999999999999999876543 2234666777776 5568999988877666
Q ss_pred ee
Q 009266 450 FY 451 (538)
Q Consensus 450 ~~ 451 (538)
|.
T Consensus 599 W~ 600 (603)
T KOG0318|consen 599 WN 600 (603)
T ss_pred ec
Confidence 53
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-41 Score=293.11 Aligned_cols=324 Identities=18% Similarity=0.252 Sum_probs=268.4
Q ss_pred CCCCCCCCceEEeeccCCceEEeeecc--CceeccccchhhcccccceEEeeeeeEEcC----CcCcEEEEEEcCCCCEE
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLREL--GQLSTRNFALRRRASEDLVLRLGIYAKLDK----HRGCVNTVSFNTDGDIL 76 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~s~~g~~l 76 (538)
.|++|-...+|++|+.+.+.++|++.. ..+..+ ..++....+-+ -...|++|+|+.+|..|
T Consensus 184 ~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q-------------~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 184 CAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ-------------LVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred EecCchhhhhhhccCCccceeeeeehhhccccchh-------------hhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 356666666999999999999999974 111100 00000011111 24679999999999999
Q ss_pred EEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEE
Q 009266 77 ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (538)
Q Consensus 77 ~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~ 156 (538)
|+|+.+|.++||+.. |..+.++ ..|+++|.+|.|+. .|.+|++++.|+++.+||..++..... +.-|..+...+
T Consensus 251 atG~~~G~~riw~~~-G~l~~tl-~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~--f~~~s~~~lDV 324 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKD-GNLISTL-GQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQ--FEFHSAPALDV 324 (524)
T ss_pred EEeecCcEEEEEecC-chhhhhh-hccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEe--eeeccCCccce
Confidence 999999999999954 6666666 78999999999999 999999999999999999988877766 66677777788
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
.|-.+. -|++++.|+.|+|+.+....++.++..| ..+|.++.|+|. +.+|++++.|++++||.+...
T Consensus 325 dW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH----------~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 325 DWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGH----------HGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred EEecCc--eEeecCCCceEEEEEecCCCcceeeecc----------cCceEEEEECCC-CceEEEecCCCeeEeeecCCC
Confidence 888765 4899999999999999999998888753 448999999998 799999999999999998765
Q ss_pred cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC---------EEEEEc-CCeEEEeeccCCCCCCCCCCCCcccc
Q 009266 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE---------LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 306 (538)
.. ..-+..|...|..+.|+|.|. .|++++ +..|++||+..
T Consensus 392 ~~---------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--------------- 441 (524)
T KOG0273|consen 392 NS---------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--------------- 441 (524)
T ss_pred cc---------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---------------
Confidence 42 333445788999999999753 556655 77999999987
Q ss_pred ccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcc
Q 009266 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH 386 (538)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~ 386 (538)
+.++.+|..|+.+ |.+|+| +|+|+|||+|+.||.|.||+++++++++.+.+ .+
T Consensus 442 -----------------------gv~i~~f~kH~~p--Vysvaf-S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~ 494 (524)
T KOG0273|consen 442 -----------------------GVPIHTLMKHQEP--VYSVAF-SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TG 494 (524)
T ss_pred -----------------------CceeEeeccCCCc--eEEEEe-cCCCcEEEecCCCCeeEeccccchheeEeecC-CC
Confidence 5677889899987 999999 99999999999999999999999999999886 45
Q ss_pred eeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 387 VVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
.|..|+|+..|.+|..+-.|+.++|.+++
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 69999999999999999999999998864
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.4e-41 Score=281.18 Aligned_cols=323 Identities=15% Similarity=0.197 Sum_probs=271.2
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
-+|+.++++||+.|....||++.+|..+ ..+.+|+..|+|+.|+.+|.+||||..+|.|
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDISTGEFA---------------------GELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccCCcce---------------------eEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 3569999999999999999999999864 6799999999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcE
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
+||...++.....+. .....|.=|.|+| .+..|+.|+.||.|-+|.+.++...+. +.+|..++++-.|.|+| +.
T Consensus 131 ~v~~~stg~~~~~~~-~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv--~~Gh~~~ct~G~f~pdG-Kr 204 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLD-QEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKV--MSGHNSPCTCGEFIPDG-KR 204 (399)
T ss_pred EEEEcccCceEEEee-cccCceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeE--ecCCCCCcccccccCCC-ce
Confidence 999999999888873 4566788899999 999999999999999999988654444 89999999999999999 68
Q ss_pred EEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
++++..||+|++|++.+++++..+.... .....++.++.. +..++.|..++.+++-...+++.......
T Consensus 205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~e---------~~~~~~~~~~~~-~~~~~~g~~e~~~~~~~~~sgKVv~~~n~- 273 (399)
T KOG0296|consen 205 ILTGYDDGTIIVWNPKTGQPLHKITQAE---------GLELPCISLNLA-GSTLTKGNSEGVACGVNNGSGKVVNCNNG- 273 (399)
T ss_pred EEEEecCceEEEEecCCCceeEEecccc---------cCcCCccccccc-cceeEeccCCccEEEEccccceEEEecCC-
Confidence 9999999999999999998887766432 124677888886 78999999999999999888876544221
Q ss_pred CCCcccCCCCccCCCccceEEEEEcC---CCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
..+.+...+...+.|+.+.| .-.+.|+++ +|+|.|||+...
T Consensus 274 ------~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------------------------- 318 (399)
T KOG0296|consen 274 ------TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------------------------- 318 (399)
T ss_pred ------CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-----------------------------
Confidence 11223333444555555555 445677787 889999998753
Q ss_pred CCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEE
Q 009266 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 401 (538)
.++..-.|... |+.+.| -+ ..+|++++.+|.|++||.++|+++.++.+|...|.+++++|+.++++
T Consensus 319 ----------~~R~~c~he~~--V~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 319 ----------TLRHICEHEDG--VTKLKW-LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVV 384 (399)
T ss_pred ----------hhheeccCCCc--eEEEEE-cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEE
Confidence 33445556665 999999 56 78999999999999999999999999999999999999999999999
Q ss_pred EeecCCceEEecCC
Q 009266 402 SSGIESDIKILTPN 415 (538)
Q Consensus 402 s~~~dg~v~vw~~~ 415 (538)
|+|.|++.+||.+.
T Consensus 385 T~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 385 TVSDDNTALVFEVP 398 (399)
T ss_pred EecCCCeEEEEecC
Confidence 99999999999864
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=285.52 Aligned_cols=293 Identities=19% Similarity=0.305 Sum_probs=258.1
Q ss_pred EEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
..+++.+.+.+|.+.|.|+++.|-+++|+||+.|++|+|||+.+|++..++ .+|...|..+++|+ -..||++++.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~--rHpYlFs~gedk 215 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSK--RHPYLFSAGEDK 215 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecc--cCceEEEecCCC
Confidence 445889999999999999999999999999999999999999999998887 89999999999999 899999999999
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
.|+.||+..++.+.. +.+|-..|.|++.+|.- ..|++|+.|.++||||+++...+..+..|. .+|.+
T Consensus 216 ~VKCwDLe~nkvIR~--YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~----------~~V~~ 282 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRH--YHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHT----------NPVAS 282 (460)
T ss_pred eeEEEechhhhhHHH--hccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCC----------Cccee
Confidence 999999999888766 89999999999999988 689999999999999999999998888654 37899
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEee
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d 288 (538)
+.+.|.+ -.+++|+.|++|++||++.++. .....+|...+++++.+|....+|+++.+.|+-|+
T Consensus 283 V~~~~~d-pqvit~S~D~tvrlWDl~agkt---------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~ 346 (460)
T KOG0285|consen 283 VMCQPTD-PQVITGSHDSTVRLWDLRAGKT---------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWK 346 (460)
T ss_pred EEeecCC-CceEEecCCceEEEeeeccCce---------------eEeeecccceeeEEecCCchhhhhccCCccceecc
Confidence 9998874 5789999999999999999863 34456788999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
+.. +..++.+.+|... |+++.. ..+ .++++|+..|.|.
T Consensus 347 ~p~--------------------------------------g~f~~nlsgh~~i--intl~~-nsD-~v~~~G~dng~~~ 384 (460)
T KOG0285|consen 347 LPE--------------------------------------GEFLQNLSGHNAI--INTLSV-NSD-GVLVSGGDNGSIM 384 (460)
T ss_pred CCc--------------------------------------cchhhccccccce--eeeeee-ccC-ceEEEcCCceEEE
Confidence 876 4455668888876 888876 444 4889999999999
Q ss_pred EeeccCcceeEEeec--------CcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 369 IWKKKGGELIRVIEA--------DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 369 iwd~~~~~~~~~~~~--------h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
+||.++|-..+.++. ....|++.+|...+..|+||..|.+|++|.-.
T Consensus 385 fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 385 FWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred EEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999999866554421 12468999999999999999999999999754
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.4e-41 Score=273.20 Aligned_cols=275 Identities=21% Similarity=0.284 Sum_probs=237.9
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
+.++.++|++++.||.+.|||.-|.... +.+.-....|..++|+|.|+++|+|+-|+..
T Consensus 63 ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 63 WSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------HAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred ecCCcCeEEeeccCCeEEEEEcccccce---------------------eEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 4688999999999999999999876653 4455567899999999999999999999999
Q ss_pred EEEECCCC--c---eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 86 ILWDWKTE--R---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 86 ~iw~~~~~--~---~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
.||++.+. + .+.+.+.+|.+.+.++.|.+ ...|+|++.|.+..+||+++++.+.. +.+|.+.|.+|.++|
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~--f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQV--FHGHTGDVMSLSLSP 196 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEE--ecCCcccEEEEecCC
Confidence 99999855 2 33444589999999999985 56899999999999999999988766 899999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
..++.+++|+-|+..++||++.+.+.+.|..|. ..|++++|.|+ |.-|++|+.|++.|+||+|..+.+.
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe----------sDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE----------SDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELA 265 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccc----------cccceEEEccC-CCeeeecCCCceeEEEeecCCcEEe
Confidence 545899999999999999999999999998754 47999999997 7999999999999999999876433
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccc
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
.+. ......+|++++||..|++|.+|. +.++.+||.-.
T Consensus 266 ~ys-------------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk---------------------------- 304 (343)
T KOG0286|consen 266 VYS-------------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK---------------------------- 304 (343)
T ss_pred eec-------------cCcccCCceeEEEcccccEEEeeecCCceeEeeccc----------------------------
Confidence 321 112356899999999999999877 45899999765
Q ss_pred cCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
......+.+|.+. |.++.. +|+|.-|++||.|..||||.
T Consensus 305 ----------~e~vg~L~GHeNR--vScl~~-s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 305 ----------GERVGVLAGHENR--VSCLGV-SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----------cceEEEeeccCCe--eEEEEE-CCCCcEEEecchhHheeecC
Confidence 5567788999997 889998 99999999999999999994
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-41 Score=282.62 Aligned_cols=293 Identities=20% Similarity=0.361 Sum_probs=262.7
Q ss_pred EEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
.|..+.+.+.+|..+|+.+-|+|.-..+++++.|++|++||..+|++...+ ++|...|..|+|+. .|++|++++.|-
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a--~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDA--SGKYLATCSSDL 172 (406)
T ss_pred CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEec--CccEEEecCCcc
Confidence 445778889999999999999999999999999999999999999996665 89999999999999 999999999999
Q ss_pred cEEEeecccC-ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 129 QVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 129 ~v~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
.+++|+..+. +++ +.+.+|...|.+++|-|.| .++++++.|.+|+.|++.++-++.++..+. ..|.
T Consensus 173 ~~~LWd~~~~~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~----------ewvr 239 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHS----------EWVR 239 (406)
T ss_pred chhheeHHHHHHHH--HHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCch----------HhEE
Confidence 9999999863 333 3478899999999999999 789999999999999999999999998654 3799
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC---------------
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--------------- 272 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------- 272 (538)
.++.+.+ |.++++++.+.+|++|-+.+++. ......|..+|.+++|.|.
T Consensus 240 ~v~v~~D-Gti~As~s~dqtl~vW~~~t~~~---------------k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 240 MVRVNQD-GTIIASCSNDQTLRVWVVATKQC---------------KAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred EEEecCC-eeEEEecCCCceEEEEEeccchh---------------hhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 9999998 89999999999999999998742 2334457788999998763
Q ss_pred CCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEe
Q 009266 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (538)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 351 (538)
++++.+++ +++|++|++.+ ..++.++.+|.+. |..++|
T Consensus 304 ~~~l~s~SrDktIk~wdv~t--------------------------------------g~cL~tL~ghdnw--Vr~~af- 342 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVST--------------------------------------GMCLFTLVGHDNW--VRGVAF- 342 (406)
T ss_pred ccEEEeecccceEEEEeccC--------------------------------------CeEEEEEecccce--eeeeEE-
Confidence 25888888 56999999998 5678899999998 999999
Q ss_pred cCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 352 s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
+|.|+||+++..|+++++|+++++++..++.+|..-|+++.|+.+..+++||+-|.++++|..
T Consensus 343 ~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999964
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-41 Score=286.69 Aligned_cols=299 Identities=22% Similarity=0.301 Sum_probs=249.7
Q ss_pred EEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCce---eeeeccCCCCCeEEEEEeecCCCceEEEEe
Q 009266 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
+..+..+.+..|...|+-+.||++|+||||++.|.+..||.+..... ..++ .+|..+|..+.||| +.++|++|+
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSP--DdryLlaCg 288 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSP--DDRYLLACG 288 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECC--CCCeEEecC
Confidence 34466788899999999999999999999999999999998754433 3444 79999999999999 999999999
Q ss_pred CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeee
Q 009266 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
.+..+++||+.++...... -.+|...+.+++|.|++ ..+++|+.|++|..|++.... ....+.. ....
T Consensus 289 ~~e~~~lwDv~tgd~~~~y-~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv---------r~~~ 356 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLY-PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-LGNWEGV---------RDPK 356 (519)
T ss_pred chHheeeccCCcchhhhhc-ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-hhccccc---------ccce
Confidence 9999999999999876542 23356889999999999 679999999999999987543 2222221 1126
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeE
Q 009266 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (538)
|.+++..++ |.++++.+.|..|++|+..+....+ ......+|+++++|.+++++++.- ...|
T Consensus 357 v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~----------------lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 357 VHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRG----------------LISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred eEEEEEcCC-CcEEEEEecccceeeechhhhhhhc----------------cccccCceeEEEEcCCCcEEEEEcccCee
Confidence 899999998 6888888899999999988754211 112356899999999999877766 5589
Q ss_pred EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC
Q 009266 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
++||+.. ...++.+.||+....+..-||-..+..++|+||.|
T Consensus 420 ~LWDl~e--------------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 420 HLWDLEE--------------------------------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred EEeecch--------------------------------------hhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 9999985 56678899999887888888844566899999999
Q ss_pred CeEEEeeccCcceeEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCCC
Q 009266 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA 417 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~ 417 (538)
+.|+||+..+++++.++.||...|++++|+|..+ ++|+||.||+||||.+...
T Consensus 462 ~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 462 SKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999999999999877 8999999999999998753
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-39 Score=295.29 Aligned_cols=342 Identities=18% Similarity=0.252 Sum_probs=279.2
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceecccc---------chhhcccccceEEe----eeeeEEcCCcCcEEEEEE
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNF---------ALRRRASEDLVLRL----GIYAKLDKHRGCVNTVSF 69 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~ 69 (538)
.|||..+..-|+|-+.||.+.+|.....-.-...- .......++.+.++ ....-+......|+|.+|
T Consensus 194 acfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f 273 (893)
T KOG0291|consen 194 ACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF 273 (893)
T ss_pred EEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec
Confidence 47889999999999999999999887321100000 00000011111111 112233444578999999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-CcEEEeecccCceeeeeeccc
Q 009266 70 NTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQILERGGVETKLLGK 148 (538)
Q Consensus 70 s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~ 148 (538)
++.-..||+|-..|...||.+..-.+++.+ .-...+|..++|+. .|.+||.|+.. |++-||++.+...+.. .++
T Consensus 274 H~~t~~lvvgFssG~f~LyelP~f~lih~L-Sis~~~I~t~~~N~--tGDWiA~g~~klgQLlVweWqsEsYVlK--QQg 348 (893)
T KOG0291|consen 274 HKGTNLLVVGFSSGEFGLYELPDFNLIHSL-SISDQKILTVSFNS--TGDWIAFGCSKLGQLLVWEWQSESYVLK--QQG 348 (893)
T ss_pred cCCceEEEEEecCCeeEEEecCCceEEEEe-ecccceeeEEEecc--cCCEEEEcCCccceEEEEEeeccceeee--ccc
Confidence 999999999999999999999998888887 55667999999998 99999998864 8999999998877766 889
Q ss_pred cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeE
Q 009266 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (538)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 228 (538)
|...+++++++|+| ++++||+.||.|+|||..++-|..+|..| ...|+.++|+.. ++.+++++-||+|
T Consensus 349 H~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteH----------ts~Vt~v~f~~~-g~~llssSLDGtV 416 (893)
T KOG0291|consen 349 HSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEH----------TSGVTAVQFTAR-GNVLLSSSLDGTV 416 (893)
T ss_pred cccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccC----------CCceEEEEEEec-CCEEEEeecCCeE
Confidence 99999999999999 79999999999999999999999998864 448999999997 7999999999999
Q ss_pred EEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC--eEEEeeccCCCCCCCCCCCCcccc
Q 009266 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTR 306 (538)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~ 306 (538)
+.||+...+. .+++....+.+..|++..|.|.++++|+.+ .|++|++++
T Consensus 417 RAwDlkRYrN--------------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT--------------- 467 (893)
T KOG0291|consen 417 RAWDLKRYRN--------------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT--------------- 467 (893)
T ss_pred Eeeeecccce--------------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec---------------
Confidence 9999988763 333334445678999999999999999965 699999998
Q ss_pred ccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc-ceeEEeecCc
Q 009266 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADR 385 (538)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~-~~~~~~~~h~ 385 (538)
++.+-.+.||.++ |.+++| +|.+..||+||.|.+||+|++-.. ..+.++. +.
T Consensus 468 -----------------------GqllDiLsGHEgP--Vs~l~f-~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~ 520 (893)
T KOG0291|consen 468 -----------------------GQLLDILSGHEGP--VSGLSF-SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IR 520 (893)
T ss_pred -----------------------CeeeehhcCCCCc--ceeeEE-ccccCeEEeccccceEEEEEeeccCceeeeEe-ec
Confidence 5667889999998 999999 999999999999999999998655 3444554 56
Q ss_pred ceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
.-+..++|+|+|+.||++..||.|.+|++...
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 67999999999999999999999999998754
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-39 Score=296.24 Aligned_cols=322 Identities=19% Similarity=0.280 Sum_probs=276.2
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
.|-|++..++||+|-..|...|+.+..-.++ +.+.--..+|..++|+..|.+||.|+..
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~li---------------------h~LSis~~~I~t~~~N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLI---------------------HSLSISDQKILTVSFNSTGDWIAFGCSK 328 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEE---------------------EEeecccceeeEEEecccCCEEEEcCCc
Confidence 4668899999999999999999999866554 5666667889999999999999998764
Q ss_pred -CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCC
Q 009266 83 -RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 83 -~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
|++-||++++...+.+. .+|...+++++++| ||+++|+|+.||.|+|||..++-|..+ +..|+..|+.+.|+..
T Consensus 329 lgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSp--Dgq~iaTG~eDgKVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~ 403 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSP--DGQLIATGAEDGKVKVWNTQSGFCFVT--FTEHTSGVTAVQFTAR 403 (893)
T ss_pred cceEEEEEeeccceeeec-cccccceeeEEECC--CCcEEEeccCCCcEEEEeccCceEEEE--eccCCCceEEEEEEec
Confidence 89999999998888777 79999999999999 999999999999999999999888876 8999999999999999
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC-eEEEEEcCCccccC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRLYDIRKYKWDG 240 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~ 240 (538)
+ +.+++++-||+|+.||+...+..+++..+. +....|++..|. |.++++|+.|. .|.+|+++++++
T Consensus 404 g-~~llssSLDGtVRAwDlkRYrNfRTft~P~---------p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGql-- 470 (893)
T KOG0291|consen 404 G-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPE---------PIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQL-- 470 (893)
T ss_pred C-CEEEEeecCCeEEeeeecccceeeeecCCC---------ceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCee--
Confidence 9 789999999999999999999999988764 336789999997 67888888776 699999999984
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccc
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
...+.+|.++|.+++|+|.+..|++++ +.+|++|++-..
T Consensus 471 -------------lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s--------------------------- 510 (893)
T KOG0291|consen 471 -------------LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS--------------------------- 510 (893)
T ss_pred -------------eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc---------------------------
Confidence 456778999999999999999999999 569999998652
Q ss_pred cCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeec----------------
Q 009266 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA---------------- 383 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~---------------- 383 (538)
.....++.... .+..++| +|+|+-||+++-||.|.+||++.+..+..+.+
T Consensus 511 ----------~~~vEtl~i~s---dvl~vsf-rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta 576 (893)
T KOG0291|consen 511 ----------SGTVETLEIRS---DVLAVSF-RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITA 576 (893)
T ss_pred ----------CceeeeEeecc---ceeEEEE-cCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeeh
Confidence 11223333222 2889999 99999999999999999999987766543321
Q ss_pred ----CcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 384 ----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 384 ----h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
.....+.++++++|++|++||....|++|++.++
T Consensus 577 ~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 577 ENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred hhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 1246899999999999999999999999998764
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.5e-39 Score=259.07 Aligned_cols=294 Identities=20% Similarity=0.261 Sum_probs=236.5
Q ss_pred eeeeeEEcCCcCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCC---ceeeeeccCCCCCeEEEEEeecCCCceEEEEeC
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTE---RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~ 126 (538)
+-..+.+++|.+.|..++|+|- |..|||||.|+.|+||++..+ .+...+-.+|+..|++++|+| .|++|++++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~g~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--HGRYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--CCcEEEEeec
Confidence 3457889999999999999997 889999999999999998743 334444468999999999999 9999999999
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (538)
|.++.||.-..+.......+.+|...|.+++|+++| ++||+++.|+.|-||.+............+. |...|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~-------HtqDV 153 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQE-------HTQDV 153 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeecc-------ccccc
Confidence 999999998766655566699999999999999999 7999999999999999986654443333222 45589
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcC-CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eE
Q 009266 207 NAIAIDPRNANLFAVAGSDEYTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FI 284 (538)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i 284 (538)
..+.|+|. ..+|++++.|.+|++|.-. .... .....+.+|...|.+++|+|.|..|++++++ ++
T Consensus 154 K~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW-------------~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 154 KHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDW-------------ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred cEEEEcCC-cceeEEeccCCeEEEEeecCCCCe-------------eEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 99999997 6899999999999999876 2221 1123445567799999999999999999955 89
Q ss_pred EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC
Q 009266 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
+||...+.. -..|... +..+.| . ...||+++.|
T Consensus 220 ~Iw~~~~~~------------------------------------------~~~~sr~--~Y~v~W-~--~~~IaS~ggD 252 (312)
T KOG0645|consen 220 SIWRLYTDL------------------------------------------SGMHSRA--LYDVPW-D--NGVIASGGGD 252 (312)
T ss_pred EeeeeccCc------------------------------------------chhcccc--eEeeee-c--ccceEeccCC
Confidence 999865321 1123333 788888 4 4589999999
Q ss_pred CeEEEeeccCc------cee-EEeecCcceeeEEeecCC-CCeEEEeecCCceEEecCC
Q 009266 365 GRIFIWKKKGG------ELI-RVIEADRHVVNCIEPHPH-STVLASSGIESDIKILTPN 415 (538)
Q Consensus 365 g~i~iwd~~~~------~~~-~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~vw~~~ 415 (538)
+.|+||..... +++ ..-..|...|++++|.|. .++|++|+.||.|++|.+.
T Consensus 253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999987642 112 233578889999999995 6799999999999999874
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.5e-41 Score=285.31 Aligned_cols=283 Identities=19% Similarity=0.303 Sum_probs=242.2
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
-+..|..+.|.|+|+.|++|+..|.+.||+..+-.. .+++..|..+|+++.|++ ++.++++|..+|.|++|+.....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-EtilQaHDs~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-ETILQAHDSPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-HHHhhhhcccceeEEEcc--CCCEEEEcCCCceEEecccchhh
Confidence 456899999999999999999999999999754332 344589999999999999 99999999999999999987544
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 219 (538)
.... ...|...|++++|+|+. ..|++++.||+|+|||....+.-..+..| ...|+++.|+|. ..+|
T Consensus 172 Vk~~--~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GH----------gwdVksvdWHP~-kgLi 237 (464)
T KOG0284|consen 172 VKII--QAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGH----------GWDVKSVDWHPT-KGLI 237 (464)
T ss_pred hHHh--hHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccC----------CCCcceeccCCc-ccee
Confidence 3322 33455899999999977 68999999999999999988877777653 347999999998 6899
Q ss_pred EEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCC
Q 009266 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPP 298 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~ 298 (538)
++|+.|..|++||.+++.. +. ....|+..|..+.|+|++.+|++++.+ .+++||+++
T Consensus 238 asgskDnlVKlWDprSg~c--------------l~-tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~------- 295 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSC--------------LA-TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT------- 295 (464)
T ss_pred EEccCCceeEeecCCCcch--------------hh-hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-------
Confidence 9999999999999999874 22 234578899999999999999999965 899999986
Q ss_pred CCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC-CCcEEEEeccCCeEEEeeccCcce
Q 009266 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGEL 377 (538)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~~gs~dg~i~iwd~~~~~~ 377 (538)
.+.+.++++|+.. ++++.| +| ...+|++|+.||.|..|.+...++
T Consensus 296 -------------------------------mkEl~~~r~Hkkd--v~~~~W-hP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 296 -------------------------------MKELFTYRGHKKD--VTSLTW-HPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred -------------------------------hHHHHHhhcchhh--heeecc-ccccccceeeccCCCceEEEecccccc
Confidence 5677889999987 999999 77 456888999999999999986666
Q ss_pred eEEe-ecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 378 IRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 378 ~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
+..+ .+|...|++|+|+|-|.+|++|+.|.++++|.-.
T Consensus 342 ~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 342 LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 6555 5799999999999999999999999999999754
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.7e-39 Score=278.03 Aligned_cols=319 Identities=17% Similarity=0.225 Sum_probs=261.6
Q ss_pred eeEEcCCcCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCC--ceee------ee-----ccCCCCCeEEEEEeecCCCc
Q 009266 54 YAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTE--RVKL------SF-----HSGHNDNVFQAKIMPFTDDR 119 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~--~~~~------~~-----~~~~~~~v~~l~~~~~~~~~ 119 (538)
.+.++ |+..|.+++|+|-.. .|++|+.+-..++|++... .... .+ -...+..|++|+|+. +|.
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~--~G~ 248 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN--DGT 248 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC--CCC
Confidence 34455 999999999999665 8999999999999998741 1111 01 012345799999998 999
Q ss_pred eEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCC
Q 009266 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (538)
Q Consensus 120 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (538)
+||+|+.+|.+++|+... ..+. .+..|.++|.++.|+..| .+|++++.|+++.+||..++...+.+..+..
T Consensus 249 ~LatG~~~G~~riw~~~G-~l~~--tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~----- 319 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDG-NLIS--TLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSA----- 319 (524)
T ss_pred eEEEeecCcEEEEEecCc-hhhh--hhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccC-----
Confidence 999999999999999763 3443 388999999999999999 7999999999999999999999988886543
Q ss_pred cceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE
Q 009266 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (538)
Q Consensus 200 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (538)
+-..+.|-.. .-|++++.|+.|+++.+...+ |...+.+|...|.++.|+|.|.+|+++
T Consensus 320 -----~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~---------------P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 320 -----PALDVDWQSN--DEFATSSTDGCIHVCKVGEDR---------------PVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred -----CccceEEecC--ceEeecCCCceEEEEEecCCC---------------cceeeecccCceEEEEECCCCceEEEe
Confidence 3355777653 689999999999999987654 445556689999999999999999999
Q ss_pred cCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC---
Q 009266 280 NDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--- 355 (538)
Q Consensus 280 ~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~--- 355 (538)
+++ +++||.+.. ......+.+|... |..+.| +|.|
T Consensus 378 SdD~TlkiWs~~~--------------------------------------~~~~~~l~~Hske--i~t~~w-sp~g~v~ 416 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQ--------------------------------------SNSVHDLQAHSKE--IYTIKW-SPTGPVT 416 (524)
T ss_pred cCCCeeEeeecCC--------------------------------------Ccchhhhhhhccc--eeeEee-cCCCCcc
Confidence 955 999999766 4456778888876 888888 8854
Q ss_pred ------cEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceee
Q 009266 356 ------EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQV 429 (538)
Q Consensus 356 ------~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 429 (538)
..|++++.|++|++||+..+.++.+|..|+.+|.+++|+|+|++||+|+.||.|.+|+.++++...-......|
T Consensus 417 ~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 417 SNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGI 496 (524)
T ss_pred CCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeE
Confidence 57899999999999999999999999999999999999999999999999999999999999886666656666
Q ss_pred eecc--cCc-eeeeccCCCCC
Q 009266 430 LIPD--HIR-WFALGDDDDGD 447 (538)
Q Consensus 430 ~~~~--~~~-~l~s~~~d~~~ 447 (538)
..+. ..+ .|..+-+++..
T Consensus 497 fel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 497 FELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred EEEEEcCCCCEEEEEecCCCc
Confidence 6655 333 55555555543
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-40 Score=275.83 Aligned_cols=277 Identities=18% Similarity=0.298 Sum_probs=244.2
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
..|+|....+++++.|++|++||..||++. +.|+||...|..|+|+..|++||+++.|-
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e---------------------~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELE---------------------RSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhh---------------------hhhhccccceeEEEEecCccEEEecCCcc
Confidence 357899999999999999999999999985 67999999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
.+++|+..+.....+.+.+|...|.+++|.| .|.+|++++.|.+|+.|++.++-++.+ +.+|...|..+..+.+|
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P--~gd~ilS~srD~tik~We~~tg~cv~t--~~~h~ewvr~v~v~~DG- 247 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP--LGDHILSCSRDNTIKAWECDTGYCVKT--FPGHSEWVRMVRVNQDG- 247 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEe--cCCeeeecccccceeEEecccceeEEe--ccCchHhEEEEEecCCe-
Confidence 9999999874433444489999999999999 899999999999999999999999877 99999999999999999
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC--------------CCcEEEEEeCCCeEE
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR--------------NANLFAVAGSDEYTR 229 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~l~~~~~dg~v~ 229 (538)
.++++++.+.+|++|-+.++++...++.|.. +|.+++|.|. ++.++++++.|++|+
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh----------~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKAELREHEH----------PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhhhhhcccc----------ceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 7999999999999999999988888776543 7888888763 246999999999999
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCcccccc
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSE 308 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (538)
+||+.++.+ ...+.+|...|..++|+|.|+||+++.++ ++++|++++
T Consensus 318 ~wdv~tg~c---------------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~----------------- 365 (406)
T KOG0295|consen 318 IWDVSTGMC---------------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN----------------- 365 (406)
T ss_pred EEeccCCeE---------------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc-----------------
Confidence 999999863 23445678999999999999999999965 899999998
Q ss_pred ccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
.++.+++..|..- ++++.| +.+-.|+++|+-|.++++|..
T Consensus 366 ---------------------~~cmk~~~ah~hf--vt~lDf-h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 ---------------------LQCMKTLEAHEHF--VTSLDF-HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---------------------ceeeeccCCCcce--eEEEec-CCCCceEEeccccceeeeeec
Confidence 5566677777775 889998 888889999999999999974
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-39 Score=253.10 Aligned_cols=284 Identities=21% Similarity=0.302 Sum_probs=246.4
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
.+.+..|+++|.++.|+-+|+|.+|++.|++|++|+...|.+++++ .+|...|..++.+. ++..+++|+.|..|.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~--Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSS--DNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccc--cccccccCCCCceEEEE
Confidence 4678899999999999999999999999999999999999999998 89999999999998 99999999999999999
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC--eeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
|+.+++.... +.+|...|+.++|+... ..+++|+.|.++++||.++.. +++.+.. ....|.++..
T Consensus 87 DV~TGkv~Rr--~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQilde----------a~D~V~Si~v 153 (307)
T KOG0316|consen 87 DVNTGKVDRR--FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDE----------AKDGVSSIDV 153 (307)
T ss_pred EcccCeeeee--cccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhh----------hcCceeEEEe
Confidence 9999998876 99999999999999988 799999999999999998764 4444432 2236888888
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeecc
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (538)
.. ..|++|+.||++|.||++.+++... ....+|+++.|+++++.+++++ +..+++.|..
T Consensus 154 ~~---heIvaGS~DGtvRtydiR~G~l~sD-----------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 154 AE---HEIVAGSVDGTVRTYDIRKGTLSSD-----------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred cc---cEEEeeccCCcEEEEEeecceeehh-----------------hcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 74 6899999999999999999874221 1245899999999999877766 7799999988
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
+ ++.++.+++|.+...-..+++ ......+++|+.||.|++|
T Consensus 214 t--------------------------------------GklL~sYkGhkn~eykldc~l-~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 214 T--------------------------------------GKLLKSYKGHKNMEYKLDCCL-NQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred h--------------------------------------hHHHHHhcccccceeeeeeee-cccceeEEeccCCceEEEE
Confidence 8 667889999998877777777 8888899999999999999
Q ss_pred eccCcceeEEeecCcce-eeEEeecCCCCeEEEeecCCceEEec
Q 009266 371 KKKGGELIRVIEADRHV-VNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 371 d~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
++.....+..+..|... |..++++|.-..|+++.. +.+.+|-
T Consensus 255 dLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 255 DLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred EeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 99999999999988877 899999999887777753 4555564
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-38 Score=267.81 Aligned_cols=334 Identities=16% Similarity=0.179 Sum_probs=265.1
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
+..|..|++.|.+++.+|+.+++|||+.|..-.||++.+|..+..+ .+|+..|+++.|+. +|.+||||..+|.|+||
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSH--DGTLLATGDMSGKVLVF 133 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEcc--CceEEEecCCCccEEEE
Confidence 5678999999999999999999999999999999999999977776 89999999999999 99999999999999999
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
...++..... +...-..+.-+.|+|.+ .+|++|+.||.|.+|.+.++...+.+..+ ..++++-.|.|
T Consensus 134 ~~stg~~~~~--~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh----------~~~ct~G~f~p 200 (399)
T KOG0296|consen 134 KVSTGGEQWK--LDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGH----------NSPCTCGEFIP 200 (399)
T ss_pred EcccCceEEE--eecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCC----------CCCcccccccC
Confidence 9999887665 44556678889999988 79999999999999999998777777653 44799999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
+ |+.++++..||+|++|++.+++.... ..........++.++..+..++.++ ++.+++-+..++
T Consensus 201 d-GKr~~tgy~dgti~~Wn~ktg~p~~~--------------~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 201 D-GKRILTGYDDGTIIVWNPKTGQPLHK--------------ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred C-CceEEEEecCceEEEEecCCCceeEE--------------ecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 8 89999999999999999999863211 1111234566777887887777777 446666666554
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccc-eeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
+....... ..+.....+... ..|..+.+ +..=.+.|+|+-||+|.|||
T Consensus 266 KVv~~~n~------------------------------~~~~l~~~~e~~~esve~~~~-ss~lpL~A~G~vdG~i~iyD 314 (399)
T KOG0296|consen 266 KVVNCNNG------------------------------TVPELKPSQEELDESVESIPS-SSKLPLAACGSVDGTIAIYD 314 (399)
T ss_pred eEEEecCC------------------------------CCccccccchhhhhhhhhccc-ccccchhhcccccceEEEEe
Confidence 33222110 011111112211 01444444 55556889999999999999
Q ss_pred ccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc-cccCccceeeeecc--cCc-eeeeccCCCCC
Q 009266 372 KKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVLIPD--HIR-WFALGDDDDGD 447 (538)
Q Consensus 372 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~ 447 (538)
+...++...+. |..+|+.+.|-+ ..+|++++.+|+|+.|+.+++++ ..+.+|...|.... ++. .++++|.++..
T Consensus 315 ~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 315 LAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred cccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 98877766655 888899999999 78999999999999999999976 67889999998655 666 99999999988
Q ss_pred ceee
Q 009266 448 YYFY 451 (538)
Q Consensus 448 ~~~~ 451 (538)
.+|.
T Consensus 393 ~VF~ 396 (399)
T KOG0296|consen 393 LVFE 396 (399)
T ss_pred EEEe
Confidence 8874
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.2e-39 Score=297.45 Aligned_cols=278 Identities=21% Similarity=0.360 Sum_probs=234.6
Q ss_pred EcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc
Q 009266 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~ 136 (538)
+..-...++|+.|++++.+||.|-.|..|++|.+...+ +..+ + +. .+. ..+=+.+.|-.+.+.|..
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~l-k-~~------~~l-----~~~d~~sad~~~~~~D~~ 439 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKL-K-DA------SDL-----SNIDTESADVDVDMLDDD 439 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccc-c-ch------hhh-----ccccccccchhhhhcccc
Confidence 33344679999999999999999999999999987543 2333 1 11 111 122233334445666655
Q ss_pred cCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
+...... +.+|.++|..+.|+|+. ++|++++.|++||+|.+.+..++..++. |..+|+.+.|+|. |
T Consensus 440 ~~~~~~~--L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~G----------H~~PVwdV~F~P~-G 505 (707)
T KOG0263|consen 440 SSGTSRT--LYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKG----------HLAPVWDVQFAPR-G 505 (707)
T ss_pred CCceeEE--eecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecC----------CCcceeeEEecCC-c
Confidence 5544443 88999999999999999 7999999999999999999999888875 4458999999997 8
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGP 295 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~ 295 (538)
.+||+++.|++.++|.....+ |..++.+|..-|.|+.|+|+..|+++|+.+ ++++||+.+
T Consensus 506 yYFatas~D~tArLWs~d~~~---------------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~---- 566 (707)
T KOG0263|consen 506 YYFATASHDQTARLWSTDHNK---------------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST---- 566 (707)
T ss_pred eEEEecCCCceeeeeecccCC---------------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCC----
Confidence 999999999999999988753 456777889999999999999999999955 899999988
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc
Q 009266 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
+..++.|.||..+ |.+++| ||+|++||+|+.||.|.|||+.++
T Consensus 567 ----------------------------------G~~VRiF~GH~~~--V~al~~-Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 567 ----------------------------------GNSVRIFTGHKGP--VTALAF-SPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred ----------------------------------CcEEEEecCCCCc--eEEEEE-cCCCceEeecccCCcEEEEEcCCC
Confidence 5568899999997 999999 999999999999999999999999
Q ss_pred ceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCc
Q 009266 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 418 (538)
+++..+.+|++.|.+|.||.+|..||+||.|.+|++||+....
T Consensus 610 ~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 610 SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999999999999999999999999999987543
No 32
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=269.90 Aligned_cols=291 Identities=19% Similarity=0.312 Sum_probs=251.1
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
.|-|+|++++|++|+.||.|-||++.+|++.+. .+++....+--|..+|.|+.||.+...||+|+.|
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD-------------LkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD-------------LKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhh-------------hhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence 467999999999999999999999999997533 2233344556688999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
|.|++|.+.+|.++++|..+|...|+|+.|+. ++..+++++.|.++++.-+.+++++.. +++|+..|+...|.++|
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKE--frGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKE--FRGHSSYVNEATFTDDG 360 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHH--hcCccccccceEEcCCC
Confidence 99999999999999999889999999999999 999999999999999999999998876 99999999999999999
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
+.+++++.||+|++|+.++.+++.+++... ...+|+++..-|.+...++++....+|+|.++...-
T Consensus 361 -~~iisaSsDgtvkvW~~KtteC~~Tfk~~~--------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv----- 426 (508)
T KOG0275|consen 361 -HHIISASSDGTVKVWHGKTTECLSTFKPLG--------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV----- 426 (508)
T ss_pred -CeEEEecCCccEEEecCcchhhhhhccCCC--------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-----
Confidence 789999999999999999999999887544 445788999989888899999999999988875321
Q ss_pred CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 009266 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (538)
|.+ |+. |+
T Consensus 427 ---------------------Vrs--fsS-Gk------------------------------------------------ 434 (508)
T KOG0275|consen 427 ---------------------VRS--FSS-GK------------------------------------------------ 434 (508)
T ss_pred ---------------------Eee--ecc-CC------------------------------------------------
Confidence 111 111 00
Q ss_pred CCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEE
Q 009266 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLAS 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 402 (538)
..+. ...+++. ||.|.++.+.+.|+.++.|.+.+|++.+++..|..-|..++-+|..++||+
T Consensus 435 ----------------REgG-dFi~~~l-SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 435 ----------------REGG-DFINAIL-SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred ----------------ccCC-ceEEEEe-cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhh
Confidence 0011 1334445 999999999999999999999999999999999999999999999999999
Q ss_pred eecCCceEEecC
Q 009266 403 SGIESDIKILTP 414 (538)
Q Consensus 403 ~~~dg~v~vw~~ 414 (538)
-+.||.+++|..
T Consensus 497 YsEDgllKLWkp 508 (508)
T KOG0275|consen 497 YSEDGLLKLWKP 508 (508)
T ss_pred hcccchhhhcCC
Confidence 999999999963
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-38 Score=293.52 Aligned_cols=259 Identities=21% Similarity=0.272 Sum_probs=218.5
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceecc---cc-chhhcccccceEE------eeeeeEEcCCcCcEEEEEEcCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTR---NF-ALRRRASEDLVLR------LGIYAKLDKHRGCVNTVSFNTD 72 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~---~~-~~~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~s~~ 72 (538)
.|=++++..+||.|..|..|++|.+...++.+- .+ ...-..+.+.... -...+++.||.++|..++|+|+
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd 462 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD 462 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence 456889999999999999999999985432111 00 0011111111111 1445669999999999999999
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
.++|+++|.|++||||.+.+..++..+ ++|..+|+.+.|+| .|-++||++.|++.++|.......... +.+|...
T Consensus 463 ~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRi--faghlsD 537 (707)
T KOG0263|consen 463 RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRI--FAGHLSD 537 (707)
T ss_pred ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhh--hcccccc
Confidence 999999999999999999999998888 79999999999999 999999999999999999987766655 8999999
Q ss_pred cEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 009266 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 232 (538)
|.|+.|+|+. +++++|+.|.+||+||+.+|..+..|.. |..+|.+++|+|. |++|++|+.+|.|++||
T Consensus 538 V~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------H~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 538 VDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTG----------HKGPVTALAFSPC-GRYLASGDEDGLIKIWD 605 (707)
T ss_pred cceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecC----------CCCceEEEEEcCC-CceEeecccCCcEEEEE
Confidence 9999999999 7999999999999999999999999976 4458999999997 89999999999999999
Q ss_pred cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCC
Q 009266 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (538)
+.++++ ......|.+.|.++.|+.+|..||+++ +..|++||+....
T Consensus 606 l~~~~~---------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 606 LANGSL---------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cCCCcc---------------hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999863 333445689999999999999999999 5589999987643
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=284.93 Aligned_cols=395 Identities=16% Similarity=0.167 Sum_probs=292.3
Q ss_pred EEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 009266 13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT 92 (538)
Q Consensus 13 l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~ 92 (538)
.++++.--.|.+||+.+|++.+.. .+..-...|+|++-+|+.-+||.|-.||.|+||+..+
T Consensus 36 ~va~~a~E~vn~WdlRtge~~~~l-------------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s 96 (888)
T KOG0306|consen 36 AVAVSALEQVNIWDLRTGEIEKKL-------------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLES 96 (888)
T ss_pred EEEEeccccEeEEeeecchhhhhh-------------------hhhcccceEEEeeccCCcceEEEEecCceEEeeccCC
Confidence 344444557999999999654221 1122346899999999999999999999999999998
Q ss_pred CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC
Q 009266 93 ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (538)
Q Consensus 93 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 172 (538)
+..+.++ .+|...|+.+.|.. .|..|++|+.|+.|.+||+-....... +.+|...|+.+-|.... .++++++.|
T Consensus 97 ~~~~~tf-ngHK~AVt~l~fd~--~G~rlaSGskDt~IIvwDlV~E~Gl~r--L~GHkd~iT~~~F~~~~-~~lvS~sKD 170 (888)
T KOG0306|consen 97 EEILITF-NGHKAAVTTLKFDK--IGTRLASGSKDTDIIVWDLVGEEGLFR--LRGHKDSITQALFLNGD-SFLVSVSKD 170 (888)
T ss_pred Cceeeee-cccccceEEEEEcc--cCceEeecCCCccEEEEEeccceeeEE--eecchHHHhHHhccCCC-eEEEEeccC
Confidence 8877777 89999999999999 999999999999999999987666554 99999999999999855 799999999
Q ss_pred CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc----------c-----
Q 009266 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY----------K----- 237 (538)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------~----- 237 (538)
+.|++||+.+..+..+...+ ...++++++.+ ..+++++.++.+++|++... .
T Consensus 171 s~iK~WdL~tqhCf~Thvd~----------r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G 237 (888)
T KOG0306|consen 171 SMIKFWDLETQHCFETHVDH----------RGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRG 237 (888)
T ss_pred ceEEEEecccceeeeEEecc----------cceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccc
Confidence 99999999999998877653 44799999987 58889999999999999100 0
Q ss_pred ------------cc----CC-------------C----------------------CC----------------------
Q 009266 238 ------------WD----GS-------------T----------------------DF---------------------- 244 (538)
Q Consensus 238 ------------~~----~~-------------~----------------------~~---------------------- 244 (538)
+. .. + ..
T Consensus 238 ~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i 317 (888)
T KOG0306|consen 238 TFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI 317 (888)
T ss_pred eeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe
Confidence 00 00 0 00
Q ss_pred ---------------CCC-----------------C-------cccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEE
Q 009266 245 ---------------GQP-----------------A-------DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (538)
Q Consensus 245 ---------------~~~-----------------~-------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~ 285 (538)
+.+ . ..........+|...|++++++.+...+++++.+.|+
T Consensus 318 r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Sik 397 (888)
T KOG0306|consen 318 RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIK 397 (888)
T ss_pred echhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEE
Confidence 000 0 0000001335678899999999999999999999999
Q ss_pred EeeccCCCCCCCCCCCCccccccccccC------------------------------------------CCCccccCCC
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMG------------------------------------------SDHTSAASPS 323 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~ 323 (538)
+|+..+.++..++... -..+..+. |++...+.++
T Consensus 398 iWn~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITCG----YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred EEEccCcceeEEeccc----cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence 9999988877665532 11222222 3333333333
Q ss_pred CCCCCcccCCceeec---cc-------------cceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcce
Q 009266 324 TANTDVRIAPQVYKG---HR-------------NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV 387 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~---~~-------------~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~ 387 (538)
.+.+.+......... .+ -...|.++.+ ||+|++||++--|++|+||-+.+.+..-.+.||.-|
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~-Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV-SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE-cCCCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence 333333322221111 00 0012556666 666666666666666666666666666778899999
Q ss_pred eeEEeecCCCCeEEEeecCCceEEecCCCCcc-cccCccceeeeecc--cCc-eeeeccCCCCCcee
Q 009266 388 VNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYF 450 (538)
Q Consensus 388 v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~ 450 (538)
|.||..||++++++|||.|.+|+||-+.=|.| ..+.+|...|.++. |+. .+.+++.|+....|
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 99999999999999999999999999998887 56888999988877 666 99999999976666
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=296.43 Aligned_cols=296 Identities=23% Similarity=0.399 Sum_probs=251.5
Q ss_pred eeeeEEcCC-cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 52 GIYAKLDKH-RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 52 ~~~~~~~~h-~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
.....+.+| ...|+++.|+|+|++|++++.++.|++|.+.+.+ .+..+ .+|...|+.++|+| ++.++++++.|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~--d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSP--DGSYLLSGSDDK 225 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECC--CCcEEEEecCCc
Confidence 345566555 7899999999999999999999999999997777 55555 79999999999999 999999999999
Q ss_pred cEEEeecccC-ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 129 QVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 129 ~v~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
+|+||++... ..+.. +.+|...|++++|+|.+ +++++|+.|++|+||++++++++..+..|. ..|+
T Consensus 226 tiriwd~~~~~~~~~~--l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs----------~~is 292 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKT--LKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHS----------DGIS 292 (456)
T ss_pred eEEEeeccCCCeEEEE--ecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccC----------CceE
Confidence 9999999433 44444 88999999999999999 899999999999999999999999888754 3899
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCcc-ceEEEEEcCCCCEEEEEcCC-eEE
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAFSDQSELLVSYNDE-FIY 285 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~-~i~ 285 (538)
+++|+++ +++|++++.|+.|++||+.++... +...+...... .++++.|+|++++|+++..+ .++
T Consensus 293 ~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 293 GLAFSPD-GNLLVSASYDGTIRVWDLETGSKL------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EEEECCC-CCEEEEcCCCccEEEEECCCCcee------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 9999998 799999999999999999998631 11122222222 79999999999999999965 999
Q ss_pred EeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccc-eeeeEEEEecCCCcEEEEeccC
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~~s~~~~~l~~gs~d 364 (538)
+|++.. ......+.+|... ..+.+..+ ++.++++++|+.|
T Consensus 360 ~w~l~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 360 LWDLRS--------------------------------------GKSVGTYTGHSNLVRCIFSPTL-STGGKLIYSGSED 400 (456)
T ss_pred EEEccC--------------------------------------CcceeeecccCCcceeEecccc-cCCCCeEEEEeCC
Confidence 999987 3455666666654 12445555 7899999999999
Q ss_pred CeEEEeeccCcceeEEeecC-cceeeEEeecCCCCeEEEee--cCCceEEecCC
Q 009266 365 GRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSG--IESDIKILTPN 415 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~--~dg~v~vw~~~ 415 (538)
+.|++|++.++..+..+.+| ...+..++|+|..+++++++ .|+.|++|...
T Consensus 401 ~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 401 GSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999999999 88999999999999999998 78999999764
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7e-37 Score=280.82 Aligned_cols=286 Identities=25% Similarity=0.416 Sum_probs=243.8
Q ss_pred eEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEee
Q 009266 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd 134 (538)
+++++|..+|++++|+|++++|++++.+|.|++|++.+++....+ ..|...+..+.|+| ++++|++++.+|.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA--DGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECC--CCCEEEEEcCCCeEEEEE
Confidence 567799999999999999999999999999999999988766665 78999999999999 889999999999999999
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
+.+++.+.. +..|...|.++.|+|++ .++++++.++.|++|++++++....+.. +...+.+++|+|+
T Consensus 80 ~~~~~~~~~--~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~ 146 (289)
T cd00200 80 LETGECVRT--LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRG----------HTDWVNSVAFSPD 146 (289)
T ss_pred cCcccceEE--EeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEecc----------CCCcEEEEEEcCc
Confidence 987655544 66788899999999987 6888888899999999998877766653 3337999999997
Q ss_pred CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCC
Q 009266 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (538)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (538)
+.++++++.++.|++|+++.++.. .....+...+.+++|+|+++.|++++ ++.|++|++..+
T Consensus 147 -~~~l~~~~~~~~i~i~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~- 209 (289)
T cd00200 147 -GTFVASSSQDGTIKLWDLRTGKCV---------------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG- 209 (289)
T ss_pred -CCEEEEEcCCCcEEEEEccccccc---------------eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-
Confidence 678888888999999999866522 22224566899999999998777776 779999998763
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
.....+..|... +.++.| +|++.++++++.+|.|++|++.
T Consensus 210 -------------------------------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 210 -------------------------------------KCLGTLRGHENG--VNSVAF-SPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred -------------------------------------ceecchhhcCCc--eEEEEE-cCCCcEEEEEcCCCcEEEEEcC
Confidence 233444455554 889998 9999999999889999999999
Q ss_pred CcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
+++++..+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999999999999996
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.5e-36 Score=312.59 Aligned_cols=293 Identities=16% Similarity=0.286 Sum_probs=233.9
Q ss_pred EEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCC----c----eeeeeccCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE----R----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~----~----~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
.+..|.+.|++++|+|+|++||||+.|+.|+||++... . +...+ .+...|.+++|+|. .+.+|++++.|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~~las~~~D 554 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSY-IKSQVASSNFE 554 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccC-CCCEEEEEeCC
Confidence 35569999999999999999999999999999997542 1 11222 34568999999872 47899999999
Q ss_pred CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
|+|++||+.+++.+.. +.+|...|++++|+|..+.+|++|+.|++|++||++++..+..+..+ ..+.
T Consensus 555 g~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-----------~~v~ 621 (793)
T PLN00181 555 GVVQVWDVARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-----------ANIC 621 (793)
T ss_pred CeEEEEECCCCeEEEE--ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-----------CCeE
Confidence 9999999988776654 78899999999999744478999999999999999998887766522 2588
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEE
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~ 286 (538)
++.|++.++.+|++|+.||.|++||+++.+. +......|...|.++.|. ++.+|++++ ++.|++
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--------------~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~iki 686 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKL--------------PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEE
Confidence 9999765589999999999999999987531 122334578899999997 566777766 679999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCe
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~ 366 (538)
|++....... ....+..+.+|... +..++| +|++++||+|+.|+.
T Consensus 687 Wd~~~~~~~~--------------------------------~~~~l~~~~gh~~~--i~~v~~-s~~~~~lasgs~D~~ 731 (793)
T PLN00181 687 WDLSMSISGI--------------------------------NETPLHSFMGHTNV--KNFVGL-SVSDGYIATGSETNE 731 (793)
T ss_pred EeCCCCcccc--------------------------------CCcceEEEcCCCCC--eeEEEE-cCCCCEEEEEeCCCE
Confidence 9987531100 02345678888876 778888 999999999999999
Q ss_pred EEEeeccCcceeEEe-------------ecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 367 IFIWKKKGGELIRVI-------------EADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 367 i~iwd~~~~~~~~~~-------------~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
|++|+.....++..+ ..|...|.+++|+|++.+|++|+.+|.|+||++
T Consensus 732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 VFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999998765544322 234567999999999999999999999999986
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=261.02 Aligned_cols=281 Identities=21% Similarity=0.325 Sum_probs=238.3
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
+.|.+.+++||+.|++|+|||+.+|++. .++.||...|..+++|+...||++++.|+.|
T Consensus 159 vdP~n~wf~tgs~DrtikIwDlatg~Lk---------------------ltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 159 VDPGNEWFATGSADRTIKIWDLATGQLK---------------------LTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred eCCCceeEEecCCCceeEEEEcccCeEE---------------------EeecchhheeeeeeecccCceEEEecCCCee
Confidence 4577899999999999999999999985 6799999999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcE
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
+.||+...+.++.+ .+|-+.|+|++.+| .-..|++|+.|.+++|||+++...+.. +.+|..+|..+.+.|..+ .
T Consensus 218 KCwDLe~nkvIR~Y-hGHlS~V~~L~lhP--Tldvl~t~grDst~RvWDiRtr~~V~~--l~GH~~~V~~V~~~~~dp-q 291 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHY-HGHLSGVYCLDLHP--TLDVLVTGGRDSTIRVWDIRTRASVHV--LSGHTNPVASVMCQPTDP-Q 291 (460)
T ss_pred EEEechhhhhHHHh-ccccceeEEEeccc--cceeEEecCCcceEEEeeecccceEEE--ecCCCCcceeEEeecCCC-c
Confidence 99999999998888 79999999999999 889999999999999999999877765 999999999999999886 5
Q ss_pred EEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
+++|+.|++|++||++.++....+..+ ...|.+++.+|. .+.||+++.| .|+-|++..+..
T Consensus 292 vit~S~D~tvrlWDl~agkt~~tlt~h----------kksvral~lhP~-e~~fASas~d-nik~w~~p~g~f------- 352 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGKTMITLTHH----------KKSVRALCLHPK-ENLFASASPD-NIKQWKLPEGEF------- 352 (460)
T ss_pred eEEecCCceEEEeeeccCceeEeeecc----------cceeeEEecCCc-hhhhhccCCc-cceeccCCccch-------
Confidence 799999999999999999988887754 347999999997 6788888776 589999998863
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
...+.+|...|.+++.+.++-+++.+..+.|..||.+++...+....
T Consensus 353 --------~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t------------------------- 399 (460)
T KOG0285|consen 353 --------LQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQT------------------------- 399 (460)
T ss_pred --------hhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccc-------------------------
Confidence 22356678899999999998766666677999999998755444220
Q ss_pred CCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
...+..+.... .|++.+| ...|..|++|..|.+|++|.-.
T Consensus 400 ----~vqpGSl~sEa---gI~as~f-Dktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 400 ----IVQPGSLESEA---GIFASCF-DKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ----cccCCcccccc---ceeEEee-cccCceEEeccCCcceEEEecc
Confidence 01111222222 2888898 9999999999999999999853
No 39
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-38 Score=277.08 Aligned_cols=362 Identities=58% Similarity=0.970 Sum_probs=304.7
Q ss_pred ccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeec
Q 009266 36 NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115 (538)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~ 115 (538)
.|...++++.....++.+...|.+|.+.|+.|.|+..|..|++||.|..|.+|++..++.+..+..+|...|....|.|+
T Consensus 117 ~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 117 RFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF 196 (559)
T ss_pred HHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC
Confidence 55667788888888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEeCCCcEEEeecccCcee-eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeeccc
Q 009266 116 TDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (538)
Q Consensus 116 ~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (538)
.+...+++++.||.|++=.+.....+ .+..+..|.++|..++.-|..++-|++++.|+.+.-+|+++..+...+.+...
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 88899999999999999887654443 36668889999999999999999999999999999999999988877776544
Q ss_pred CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-C
Q 009266 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-S 273 (538)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~ 273 (538)
... ......+++..|.+.+.+++|+.+..+++||.+....... ..++..+|+.++.......|++++|+.+ +
T Consensus 277 ~~~----~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~---n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 277 DEK----ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN---NGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred CCc----cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc---cchhhhcCCccccccCcccceeEEecCCcc
Confidence 322 1246889999999888999999999999999997654332 2356778999988888889999999954 5
Q ss_pred CEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC
Q 009266 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (538)
Q Consensus 274 ~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~ 353 (538)
.+|++..+..|++|....+....+.+..+. .....+.++||.+..+|..+.||.|
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~-------------------------~~~~k~vYKGHrN~~TVKgVNFfGP 404 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPR-------------------------EQYVKRVYKGHRNSRTVKGVNFFGP 404 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcch-------------------------hhccchhhcccccccccceeeeccC
Confidence 788888888999996555433222221111 1223345999999999999999999
Q ss_pred CCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceee
Q 009266 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQV 429 (538)
Q Consensus 354 ~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 429 (538)
...|+++|+.-|.|.||+-++++++..+.+-...|+||.-+|.-++||++|.|.-|+||.+.+.+..........+
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~v 480 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQV 480 (559)
T ss_pred ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHH
Confidence 9999999999999999999999999999987779999999999999999999999999999776665554444433
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-38 Score=271.00 Aligned_cols=275 Identities=17% Similarity=0.277 Sum_probs=230.4
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
..|+|++|++|+..|.+.||+..+-. ....+++|..+|+++.|+++|.++++|..+|.|
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~~fn---------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGTSFN---------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred EcCCCceeEeecccccEEEecCceee---------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceE
Confidence 45899999999999999999986322 134578899999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcE
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
++|+..-. .+..+...|...|++++|+| +...+++|+.||+|+||+....+.... +.+|.-.|.++.|+|.. .+
T Consensus 163 KyWqpnmn-nVk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwdVksvdWHP~k-gL 236 (464)
T KOG0284|consen 163 KYWQPNMN-NVKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWDVKSVDWHPTK-GL 236 (464)
T ss_pred Eecccchh-hhHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhhe--eccCCCCcceeccCCcc-ce
Confidence 99997643 34555455669999999999 999999999999999999987766554 89999999999999988 69
Q ss_pred EEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
|++++.|..|++||.+++.++.++..| ...|..+.|+|+ +++|++++.|..+++||+++.+.
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh~H----------KntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkE------- 298 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLHGH----------KNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKE------- 298 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhhhc----------cceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHH-------
Confidence 999999999999999999999887754 448999999997 69999999999999999996653
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCC-CEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (538)
.....+|...+++++|+|-. .+|++++ ++.|..|.+....+
T Consensus 299 --------l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p----------------------------- 341 (464)
T KOG0284|consen 299 --------LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP----------------------------- 341 (464)
T ss_pred --------HHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc-----------------------------
Confidence 23445678899999999954 4555555 77999998874221
Q ss_pred CCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
....-.+|... |++++| +|=|.+|++|+.|.++++|...
T Consensus 342 --------~~~i~~AHd~~--iwsl~~-hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 342 --------LGEIPPAHDGE--IWSLAY-HPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred --------ccCCCcccccc--eeeeec-cccceeEeecCCCcceeeeccC
Confidence 22233456665 999999 9999999999999999999853
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=253.00 Aligned_cols=292 Identities=20% Similarity=0.279 Sum_probs=249.4
Q ss_pred eEEcCCcCcEEEEEEcC---CCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 55 AKLDKHRGCVNTVSFNT---DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~---~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
.+..||..+|..++||| +|-+|++++.|+.-.+-+-.+|..+.+| .+|.+.|++..... +....++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~--na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNK--NATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCc--hhhhhhhhcccchhh
Confidence 45679999999999996 7899999999999999999999999999 79999999999988 888889999999999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee-eeeeecccCCCCCcceeeeeEEEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
||+.-++..+.. + .|...|..++|+.+. ++|++|+.+..+|||+++..+.. ..+. + +...|+.+.
T Consensus 85 vw~a~tgdelhs--f-~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~--------g--htg~Ir~v~ 150 (334)
T KOG0278|consen 85 VWDAVTGDELHS--F-EHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEIS--------G--HTGGIRTVL 150 (334)
T ss_pred hhhhhhhhhhhh--h-hhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhc--------C--CCCcceeEE
Confidence 999999887654 3 488999999999998 68999999999999999876532 2222 2 455899999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeecc
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (538)
|... .+.|++++.+++||+||.++++....+.+ +.+|+++.++++|++|.++..+.|..|+..
T Consensus 151 wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------~s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 151 WCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred Eecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------CCCCcceeeccCCCEEEEecCceeEEeccc
Confidence 9886 68888889999999999999976544322 457899999999999999999999999987
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
+ ...++.+. .+..|.+... +|+..++++|+.|+.++.|
T Consensus 214 s--------------------------------------f~~lKs~k---~P~nV~SASL-~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 214 S--------------------------------------FGLLKSYK---MPCNVESASL-HPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred c--------------------------------------ccceeecc---Cccccccccc-cCCCceEEecCcceEEEEE
Confidence 6 22333333 3334778887 9999999999999999999
Q ss_pred eccCcceeEEe-ecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccccc
Q 009266 371 KKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422 (538)
Q Consensus 371 d~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 422 (538)
|..++..+..+ ++|.++|.|+.|+|+|...|+||.||+||+|.+..++...+
T Consensus 252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~ 304 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGL 304 (334)
T ss_pred eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhh
Confidence 99999999886 89999999999999999999999999999999887655433
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-37 Score=287.52 Aligned_cols=303 Identities=17% Similarity=0.258 Sum_probs=261.4
Q ss_pred EEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec
Q 009266 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~ 135 (538)
.+...+..|..++|+|...+++++-..|.|++||.+-+.++.+| ..|.++|..++|+| .+.++++|+.|-.|+||+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~--~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHP--TQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecC--CCCeEEecCCccEEEEEec
Confidence 35556788999999999999999999999999999999999998 79999999999999 9999999999999999999
Q ss_pred ccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCC
Q 009266 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (538)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 215 (538)
.+.+++.+ +.+|-..|+.+.|++.-| ++++++.|.+|+||+..+++++..++.|. ..|.|.+|+|.
T Consensus 81 k~rrclft--L~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltGHn----------HYVMcAqFhpt- 146 (1202)
T KOG0292|consen 81 KTRRCLFT--LLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHN----------HYVMCAQFHPT- 146 (1202)
T ss_pred ccceehhh--hccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEecCc----------eEEEeeccCCc-
Confidence 99988876 999999999999999995 89999999999999999999999988643 38999999997
Q ss_pred CcEEEEEeCCCeEEEEEcCCccccCCCCCCC--------------CCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC
Q 009266 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ--------------PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (538)
Q Consensus 216 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (538)
..++++++-|.+||+||+...+.......+. +..-...+....+|...|+.++|+|.-.+|++|++
T Consensus 147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 6899999999999999998665432211100 00011234566789999999999999999999997
Q ss_pred C-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE
Q 009266 282 E-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (538)
Q Consensus 282 ~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~ 360 (538)
+ .|++|.+... +...+-+..+|.+. |.++.| +|...+|++
T Consensus 227 DRqVKlWrmnet------------------------------------KaWEvDtcrgH~nn--Vssvlf-hp~q~lIlS 267 (1202)
T KOG0292|consen 227 DRQVKLWRMNET------------------------------------KAWEVDTCRGHYNN--VSSVLF-HPHQDLILS 267 (1202)
T ss_pred cceeeEEEeccc------------------------------------cceeehhhhcccCC--cceEEe-cCccceeEe
Confidence 7 7999998752 24566788999997 899998 999999999
Q ss_pred eccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 361 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
.+.|++|+|||+...+.+++++.....-+.++-+|..+++|+| .|+.+.||.+.
T Consensus 268 nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence 9999999999999999999998777899999999999987766 45666677665
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-36 Score=269.43 Aligned_cols=265 Identities=15% Similarity=0.205 Sum_probs=226.0
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceecc---------------ccchhhcccccceEEe------eeeeEEcCCcCcE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTR---------------NFALRRRASEDLVLRL------GIYAKLDKHRGCV 64 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~---------------~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v 64 (538)
++|..+.++++-.+|.|+||+.+|..+.+. +...+++++.+..+|+ ..++.+.+|...|
T Consensus 21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyI 100 (794)
T KOG0276|consen 21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYI 100 (794)
T ss_pred cCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccce
Confidence 678999999999999999999998887765 2233788888888887 7788999999999
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee
Q 009266 65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (538)
Q Consensus 65 ~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 144 (538)
.||+.+|...+++|+|.|-+|++|+.+.+-...+...+|...|.+++|+|. +.+.+|+++.|++|+||.+.+..+..+
T Consensus 101 R~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfT- 178 (794)
T KOG0276|consen 101 RSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFT- 178 (794)
T ss_pred eeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCcee-
Confidence 999999999999999999999999998766555555999999999999994 788999999999999999987766655
Q ss_pred eccccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 145 LLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
+.+|...|+|+.+-+.+ +-+|++|+.|.+|+|||.++..+++++..|. ..|..+.|+|. -.+|++|+
T Consensus 179 -l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt----------~Nvs~v~fhp~-lpiiisgs 246 (794)
T KOG0276|consen 179 -LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT----------NNVSFVFFHPE-LPIIISGS 246 (794)
T ss_pred -eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc----------ccceEEEecCC-CcEEEEec
Confidence 88999999999998755 2489999999999999999999999988643 37999999997 68999999
Q ss_pred CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCC
Q 009266 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP 299 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~ 299 (538)
+||+||||...+.++.....+ .-..+.|++-.+.+..++.|.+....+..+-...+...+.
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~---------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd 307 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNY---------------GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMD 307 (794)
T ss_pred CCccEEEecCcceehhhhhhc---------------CCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeec
Confidence 999999999998876544333 3467999999998888999988777777776655544444
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-37 Score=275.30 Aligned_cols=286 Identities=22% Similarity=0.339 Sum_probs=252.3
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
..+++..|+..|.++.|+|...+++++-..|.|.||+.++...+..+ .-..-+|++..|-+ ..+++++|+.|..|+|
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfia--RknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIA--RKNWIVTGSDDMQIRV 81 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeee--ccceEEEecCCceEEE
Confidence 34566779999999999999999999999999999999999888887 56778999999999 8999999999999999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC-CeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
|+..+...+.. +..|...|++|+.+|..| ++++++.|-+|++|+...+ .+.+++..| .| .|.+++|
T Consensus 82 fnynt~ekV~~--FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH--------~H--yVMqv~f 148 (794)
T KOG0276|consen 82 FNYNTGEKVKT--FEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGH--------EH--YVMQVAF 148 (794)
T ss_pred EecccceeeEE--eeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCc--------ce--EEEEEEe
Confidence 99999988866 899999999999999996 7899999999999999865 455556543 23 8999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC--CEEEEEcCC-eEEEee
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDE-FIYLFT 288 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~-~i~~~d 288 (538)
+|.+.+.||+++-|++|++|.+.+.. +.....+|...|+|+.+-+-| .+|++|+++ .|+|||
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~---------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWD 213 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPH---------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWD 213 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCC---------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEee
Confidence 99989999999999999999997753 334455789999999999865 699999977 899999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
.++ ..+++++.||.+. |..++| +|.-.++++|+.||+||
T Consensus 214 yQt--------------------------------------k~CV~TLeGHt~N--vs~v~f-hp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 214 YQT--------------------------------------KSCVQTLEGHTNN--VSFVFF-HPELPIIISGSEDGTVR 252 (794)
T ss_pred cch--------------------------------------HHHHHHhhccccc--ceEEEe-cCCCcEEEEecCCccEE
Confidence 998 6788999999987 888888 99999999999999999
Q ss_pred EeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceE
Q 009266 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~ 410 (538)
||+..+.++..++.-.-.+|++++-.+.++.++.|...|.|.
T Consensus 253 iWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 253 IWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 999999999988887778999999999988888887766653
No 45
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-35 Score=243.86 Aligned_cols=298 Identities=23% Similarity=0.413 Sum_probs=244.3
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC--CC
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DG 128 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~--dg 128 (538)
+++.+.++.-.+.|++|.|+++|.+|++++.|.+|+||+..+++.+.++ ..+.-.|..++|.. ....++.++. |.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth--~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTH--HSNTVIHSSTKEDD 80 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEec--CCceEEEccCCCCC
Confidence 4556677777889999999999999999999999999999999998888 56777899999987 6667776665 88
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
+||..++.+++.+.. +.+|...|+.|+.+|-+ ..+++++.|++|++||++..++...+... .-..
T Consensus 81 tIryLsl~dNkylRY--F~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------~~pi 145 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRY--FPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------GRPI 145 (311)
T ss_pred ceEEEEeecCceEEE--cCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecC------------CCcc
Confidence 999999999998876 99999999999999988 68999999999999999988887766543 2356
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEe
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~ 287 (538)
++|.|+ |-++|++.....|++||+|.... .|...+.+.. ......+.|.|+|+|++|+.++ .+.+++.
T Consensus 146 ~AfDp~-GLifA~~~~~~~IkLyD~Rs~dk-------gPF~tf~i~~---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 146 AAFDPE-GLIFALANGSELIKLYDLRSFDK-------GPFTTFSITD---NDEAEWTDLEFSPDGKSILLSTNASFIYLL 214 (311)
T ss_pred eeECCC-CcEEEEecCCCeEEEEEecccCC-------CCceeEccCC---CCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence 899998 78899988888999999998652 2333333322 3456789999999999887777 5589999
Q ss_pred eccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeE
Q 009266 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (538)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i 367 (538)
|.-.| ..+.++.++.+...+.--+.|+|++++|++|+.||+|
T Consensus 215 DAf~G--------------------------------------~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 215 DAFDG--------------------------------------TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred EccCC--------------------------------------cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 98774 3455666666553333333349999999999999999
Q ss_pred EEeeccCcceeEEeec-CcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 368 FIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 368 ~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
.+|++++++.+..+.+ +.+++.++.|+|...++||++ ..+.+|-+...
T Consensus 257 ~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 257 HVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred EEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence 9999999999999998 688999999999888888775 57888876543
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=259.08 Aligned_cols=276 Identities=20% Similarity=0.304 Sum_probs=232.8
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
....|.|+.+. ...+++|..|++|+|||..+..++..+ .+|++.|.|+.|. .+.|++|+.|.+|+|||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeecc----ceEEEecCCCceEEEEeccCCc
Confidence 45789999985 567999999999999999888887666 8999999999994 5799999999999999999999
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 219 (538)
++.+ +.+|...|..+.|+. .++++++.|.+|.+|++.....+...... .| |...|+.+.|+. +++
T Consensus 269 ~l~t--lihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVL-----vG--HrAaVNvVdfd~---kyI 333 (499)
T KOG0281|consen 269 PLNT--LIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVL-----VG--HRAAVNVVDFDD---KYI 333 (499)
T ss_pred hhhH--HhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHH-----hh--hhhheeeecccc---ceE
Confidence 8876 888999999999986 47999999999999999877643322211 12 455899999984 599
Q ss_pred EEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCC
Q 009266 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 298 (538)
++++.|.+|++|++.+... .....+|...|.|+.+ .++++++|+ +.+|++|++..
T Consensus 334 VsASgDRTikvW~~st~ef---------------vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~------- 389 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEF---------------VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC------- 389 (499)
T ss_pred EEecCCceEEEEeccceee---------------ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc-------
Confidence 9999999999999999874 3345567888888876 588999998 55999999988
Q ss_pred CCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc--
Q 009266 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-- 376 (538)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~-- 376 (538)
+.+++.+.||..- |.++.| +.+.|++|+.||+|+|||+.++.
T Consensus 390 -------------------------------G~cLRvLeGHEeL--vRciRF---d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 390 -------------------------------GACLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred -------------------------------cHHHHHHhchHHh--hhheee---cCceeeeccccceEEEEecccccCC
Confidence 5678899999987 889998 67899999999999999998764
Q ss_pred -------eeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 377 -------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 377 -------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
++.++..|++.|..+.| +...+++++.|.+|.||++..+..
T Consensus 434 ra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 434 RAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 34566679999999999 457899999999999999876644
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.5e-36 Score=285.25 Aligned_cols=280 Identities=24% Similarity=0.395 Sum_probs=233.6
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-|+++++.+++++.++.+++|+..+++. .+.+.+.+|...|+.++|+|++++|++++.|++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-------------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKT 226 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-------------------hhhccccccccceeeeEECCCCcEEEEecCCce
Confidence 4678899999999999999999976651 123566899999999999999999999999999
Q ss_pred EEEEEC-CCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC
Q 009266 85 VILWDW-KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 85 i~iw~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
|+||++ ..+..++++ .+|...|++++|+| .++++++|+.|++|+||++.+++++.. +.+|...|++++|++++
T Consensus 227 iriwd~~~~~~~~~~l-~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~--l~~hs~~is~~~f~~d~- 300 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLKTL-KGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRK--LKGHSDGISGLAFSPDG- 300 (456)
T ss_pred EEEeeccCCCeEEEEe-cCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEe--eeccCCceEEEEECCCC-
Confidence 999999 444666666 79999999999999 999999999999999999999877766 99999999999999999
Q ss_pred cEEEEEcCCCcEEEEecCCCCe--eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
++|++++.|+.|+|||+.++.. ...+..... .. ++++++|+|+ +.+|++++.++.+++|+++.+....
T Consensus 301 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~-~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~~~- 370 (456)
T KOG0266|consen 301 NLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN-------SA-PVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKSVG- 370 (456)
T ss_pred CEEEEcCCCccEEEEECCCCceeeeecccCCCC-------CC-ceeEEEECCC-CcEEEEecCCCeEEEEEccCCccee-
Confidence 7899999999999999999984 444443321 22 6899999997 8999999999999999999876432
Q ss_pred CCCCCCCcccCCCCccCCCc--cceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcc
Q 009266 242 TDFGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
....+.. ..+.+..+++.++++++++ ++.|++|++.+
T Consensus 371 -------------~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s--------------------------- 410 (456)
T KOG0266|consen 371 -------------TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS--------------------------- 410 (456)
T ss_pred -------------eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc---------------------------
Confidence 2222222 2455666688999999999 55999999987
Q ss_pred ccCCCCCCCCcccCCceeecc-ccceeeeEEEEecCCCcEEEEec--cCCeEEEeecc
Q 009266 319 AASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKK 373 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~s~~~~~l~~gs--~dg~i~iwd~~ 373 (538)
...+..+.+| ... +..+.+ +|..+++++++ .|+.|++|...
T Consensus 411 -----------~~~~~~l~~h~~~~--~~~~~~-~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 411 -----------GGILQRLEGHSKAA--VSDLSS-HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -----------cchhhhhcCCCCCc--eecccc-CCCcCeeeecCcCCCceEEEecCC
Confidence 4556777888 443 888888 99999999988 78999999753
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.3e-37 Score=258.12 Aligned_cols=274 Identities=17% Similarity=0.284 Sum_probs=228.3
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
...+++|.+|.+|+|||..+-.++ +.|.||++.|.|+.|. .+.|++||.|.+|+|||
T Consensus 207 D~kiVSGlrDnTikiWD~n~~~c~---------------------~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWD 263 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNSLECL---------------------KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWD 263 (499)
T ss_pred chhhhcccccCceEEeccccHHHH---------------------HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEe
Confidence 346899999999999999976664 6789999999999996 56999999999999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee-eeeeccccCCCcEEEEEcCCCCcEEEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (538)
+++|+++.++ .+|...|..+.|+. .++++++.|.++.+|++.....+ ..+.+.+|...|+.+.|.. +++++
T Consensus 264 v~tge~l~tl-ihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVs 335 (499)
T KOG0281|consen 264 VNTGEPLNTL-IHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVS 335 (499)
T ss_pred ccCCchhhHH-hhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEE
Confidence 9999998887 68999999999973 69999999999999999876533 2345789999999999986 58999
Q ss_pred EcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCC
Q 009266 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (538)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (538)
++.|.+|++|++.+.+++.++..|+ ..|.|+.+. ++++++|+.|.+|++|++..+..
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHk----------RGIAClQYr---~rlvVSGSSDntIRlwdi~~G~c---------- 392 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHK----------RGIACLQYR---DRLVVSGSSDNTIRLWDIECGAC---------- 392 (499)
T ss_pred ecCCceEEEEeccceeeehhhhccc----------ccceehhcc---CeEEEecCCCceEEEEeccccHH----------
Confidence 9999999999999999999887654 367888775 68999999999999999999874
Q ss_pred cccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCC
Q 009266 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
.....+|..-|+++.|. .+.+++|+ +|+|++|++..+..+....
T Consensus 393 -----LRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~---------------------------- 437 (499)
T KOG0281|consen 393 -----LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPA---------------------------- 437 (499)
T ss_pred -----HHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccc----------------------------
Confidence 33455678899999995 45677776 8899999998865433211
Q ss_pred CcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCccee
Q 009266 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~ 378 (538)
...++.++..|.+. |..+.| +...|++++.|.+|.|||.-++-+-
T Consensus 438 -~~~Cl~~lv~hsgR--VFrLQF---D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 438 -STLCLRTLVEHSGR--VFRLQF---DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred -cchHHHhhhhccce--eEEEee---cceEEEeccCCCeEEEEEcCCCCcc
Confidence 02345666677766 899998 6778999999999999998776443
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=234.99 Aligned_cols=282 Identities=18% Similarity=0.283 Sum_probs=217.8
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEE-cCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
|++|-.|..||+++.|..||||+...+.- +.+...+ .+|+..|.+++|+|.|++||+||.|
T Consensus 21 awhp~~g~ilAscg~Dk~vriw~~~~~~s------------------~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 21 AWHPGKGVILASCGTDKAVRIWSTSSGDS------------------WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred EeccCCceEEEeecCCceEEEEecCCCCc------------------EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 45555588999999999999999984221 1222233 4799999999999999999999999
Q ss_pred CeEEEEECCCC--ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce-eeeeeccccCCCcEEEEEc
Q 009266 83 RRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 83 ~~i~iw~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~ 159 (538)
.++.||.-..+ +++.++ .+|...|.+++|++ +|.+||+|+.|..|-||.+..... -....++.|+..|..+.|+
T Consensus 83 ~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATL-EGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ceEEEeecCCCceeEEeee-eccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 99999986544 344444 89999999999999 999999999999999999975433 2334589999999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCC---CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTG---AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
|.. .+|+++++|.+|++|.-..+ .+++++.. +...|.+++|+|. |..|++++.|++|+||...+.
T Consensus 160 Pt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g----------~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 160 PTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG----------HENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred CCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecC----------ccceEEEEEecCC-CceEEEecCCcceEeeeeccC
Confidence 988 69999999999999987622 45555554 3337999999997 799999999999999997642
Q ss_pred cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCC
Q 009266 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (538)
+...|..++..++|. +| .|++++ ++.|++|..........+
T Consensus 228 -------------------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~----------------- 269 (312)
T KOG0645|consen 228 -------------------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSW----------------- 269 (312)
T ss_pred -------------------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchH-----------------
Confidence 122356789999998 44 566655 779999986532110000
Q ss_pred CccccCCCCCCCCcccCCceeeccccceeeeEEEEecCC-CcEEEEeccCCeEEEeecc
Q 009266 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~-~~~l~~gs~dg~i~iwd~~ 373 (538)
....+.-..|... |++|.| .|. .++|++|+.||.|++|.+.
T Consensus 270 --------------~l~~~~~~aHe~d--VNsV~w-~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 270 --------------NLLAKKEGAHEVD--VNSVQW-NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --------------HHHHhhhcccccc--cceEEE-cCCCCCceeecCCCceEEEEEec
Confidence 1111233445554 999999 895 6799999999999999874
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=242.49 Aligned_cols=279 Identities=17% Similarity=0.253 Sum_probs=236.0
Q ss_pred ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEe
Q 009266 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (538)
Q Consensus 100 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 179 (538)
+.+|.+.|+.+.|+| +|.+||+|+.|..|.+|++.. .+.....+.+|.++|..+.|.+++ ..|++++.|.+|+.||
T Consensus 43 l~gh~geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHP--DGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECC--CCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEe
Confidence 479999999999999 999999999999999999753 333334578999999999999999 6899999999999999
Q ss_pred cCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCC
Q 009266 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (538)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (538)
+++++.+..++.+. .-|+++.-+.-|..++.+++.||++++||+|+....+. . .
T Consensus 119 ~~tG~~~rk~k~h~----------~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--------------~--~ 172 (338)
T KOG0265|consen 119 AETGKRIRKHKGHT----------SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--------------F--E 172 (338)
T ss_pred cccceeeehhcccc----------ceeeecCccccCCeEEEecCCCceEEEEeecccchhhc--------------c--c
Confidence 99999998887643 36777775555667889999999999999997652211 1 1
Q ss_pred CccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec
Q 009266 260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (538)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
...+++++.|...+..+.+|+ ++.|++||++. .....++.|
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~--------------------------------------~d~~~~lsG 214 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK--------------------------------------NDGLYTLSG 214 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeecccc--------------------------------------CcceEEeec
Confidence 256899999999999888888 78999999976 456788999
Q ss_pred cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc----ceeEEeecCcc----eeeEEeecCCCCeEEEeecCCceE
Q 009266 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----ELIRVIEADRH----VVNCIEPHPHSTVLASSGIESDIK 410 (538)
Q Consensus 339 ~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~----~~~~~~~~h~~----~v~~~~~s~~~~~l~s~~~dg~v~ 410 (538)
|... |+.+.. +|.|.++.+-+.|.+|++|++... .++..+.+|.. ....++|+|+++.+.+|+.|..++
T Consensus 215 h~Dt--It~lsl-s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 215 HADT--ITGLSL-SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred ccCc--eeeEEe-ccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEE
Confidence 9997 999998 999999999999999999998643 45777877653 356789999999999999999999
Q ss_pred EecCCCC-cccccCccceeeeecc--cCc-eeeeccCCCCCce
Q 009266 411 ILTPNAA-DRATLPTNIEQVLIPD--HIR-WFALGDDDDGDYY 449 (538)
Q Consensus 411 vw~~~~~-~~~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~ 449 (538)
+|+.... -+..+++|.+.|..+. |.. .|.+++.|.+.|.
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999885 4578999999999888 555 9999999987764
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.2e-35 Score=249.07 Aligned_cols=273 Identities=21% Similarity=0.340 Sum_probs=230.4
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCC---CEEEEecCCCeEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGSDDRRVI 86 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~t~~~d~~i~ 86 (538)
+++|++|++||+++||+.. |+.+ +++.||.++|.+++|.-.. ..|+++|.|.+++
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~---------------------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSI---------------------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceE---------------------EEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 6889999999999999998 7764 6789999999998886533 3699999999999
Q ss_pred EEECCCCceeeee---ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc-----------------------Cce
Q 009266 87 LWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-----------------------RGG 140 (538)
Q Consensus 87 iw~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~-----------------------~~~ 140 (538)
+|.++.+...... ..||...|-+++..+ +|..+++|+.|.+|+||+..+ +..
T Consensus 173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred EEEecCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 9999877653322 259999999999999 999999999999999999321 111
Q ss_pred eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
.+...+.+|+.+|.++.|++. ..+++++.|.+|+.||+.++..+..+... ..++++.++|. ..+|+
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~-----------ksl~~i~~~~~-~~Ll~ 316 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTN-----------KSLNCISYSPL-SKLLA 316 (423)
T ss_pred CceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecC-----------cceeEeecccc-cceee
Confidence 234457899999999999994 47899999999999999999998887743 36899999997 78999
Q ss_pred EEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCC
Q 009266 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS 300 (538)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~ 300 (538)
+|+.|..|++||.|++. |
T Consensus 317 ~gssdr~irl~DPR~~~-----------------------------------g--------------------------- 334 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGD-----------------------------------G--------------------------- 334 (423)
T ss_pred ecCCCCceeecCCCCCC-----------------------------------C---------------------------
Confidence 99999999999998753 1
Q ss_pred CCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc-EEEEeccCCeEEEeeccCcc-ee
Q 009266 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKGGE-LI 378 (538)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~~gs~dg~i~iwd~~~~~-~~ 378 (538)
....++|.+|.+. |.++.| +|... +|++|+.|+++++||+++.+ ++
T Consensus 335 -----------------------------s~v~~s~~gH~nw--Vssvkw-sp~~~~~~~S~S~D~t~klWDvRS~k~pl 382 (423)
T KOG0313|consen 335 -----------------------------SVVSQSLIGHKNW--VSSVKW-SPTNEFQLVSGSYDNTVKLWDVRSTKAPL 382 (423)
T ss_pred -----------------------------ceeEEeeecchhh--hhheec-CCCCceEEEEEecCCeEEEEEeccCCCcc
Confidence 1123567788886 889998 77654 67899999999999999887 99
Q ss_pred EEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 379 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
..+.+|...|.++.|. .+.+|++||.|++|+|+.-.
T Consensus 383 ydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 383 YDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999999999997 45689999999999998754
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-35 Score=274.10 Aligned_cols=251 Identities=18% Similarity=0.275 Sum_probs=211.9
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
-.|+|..++++++-..|.|++||.+-|.++ ..|..|.++|..++|+|.+.++++||.|.
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli---------------------~rFdeHdGpVRgv~FH~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLI---------------------DRFDEHDGPVRGVDFHPTQPLFVSGGDDY 73 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHH---------------------hhhhccCCccceeeecCCCCeEEecCCcc
Confidence 357889999999999999999999988886 56889999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
.|++|+..+.+++.++ .+|-..|..+.|++ .-.+++++|.|.+|+||++.+++++.. +.+|...|.|..|+|..
T Consensus 74 kIkVWnYk~rrclftL-~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iav--ltGHnHYVMcAqFhptE- 147 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTL-LGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAV--LTGHNHYVMCAQFHPTE- 147 (1202)
T ss_pred EEEEEecccceehhhh-ccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEE--EecCceEEEeeccCCcc-
Confidence 9999999999999988 79999999999999 899999999999999999999999987 99999999999999987
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeee--------cc-------------cCCCCCcceeeeeEEEEEcCCCCcEEEEE
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTC--------RP-------------IDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
.++++++-|.+|||||+..-+....-.. .+ .....| |...|+.++|+|. -.+|++|
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG--HDRGVNwaAfhpT-lpliVSG 224 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG--HDRGVNWAAFHPT-LPLIVSG 224 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc--cccccceEEecCC-cceEEec
Confidence 6899999999999999864322111100 00 001223 5568999999997 5799999
Q ss_pred eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCC
Q 009266 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP 297 (538)
Q Consensus 223 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 297 (538)
+.|+.|++|.+...+. .-.....+|...|.++.|+|...++++.+ ++.|+|||+...+...+
T Consensus 225 ~DDRqVKlWrmnetKa-------------WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKA-------------WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred CCcceeeEEEeccccc-------------eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence 9999999999986541 12234456889999999999999999988 55899999987444333
No 53
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.4e-35 Score=259.44 Aligned_cols=303 Identities=16% Similarity=0.205 Sum_probs=239.6
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeccCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
.....+++|+..|+++++.|.|..|+|||.|.+|++||++... .-+.+.......|++++|++ .|..|++.+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~--Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV--TGDQILVVSGS 235 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC--CCCeEEEEecC
Confidence 3445788999999999999999999999999999999987533 22333344556899999999 89999888888
Q ss_pred CcEEEeecccCceee----------eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC-eeeeeeecccCC
Q 009266 128 GQVRHAQILERGGVE----------TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDD 196 (538)
Q Consensus 128 g~v~vwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~ 196 (538)
...+|+|-....... .....+|...++|.+|+|..+..|+|++.||++|||++...+ .++.++.....
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~- 314 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG- 314 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC-
Confidence 899999865332221 122468999999999999998999999999999999997654 33444433221
Q ss_pred CCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCcc--ceEEEEEcCCCC
Q 009266 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV--GITGLAFSDQSE 274 (538)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~ 274 (538)
+ ...++++++|+|+ +.+||+|+.||.|.+|+.++...... ......|.. .|+||+||++|+
T Consensus 315 --g--~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~------------~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 315 --G--KRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPV------------MKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred --C--cccCceeeecCCC-cchhhhcccCCceeeeecCCcccccc------------eEeeeccCCCCceeEEEeccccc
Confidence 1 3447899999998 78999999999999999866542211 223334554 899999999999
Q ss_pred EEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC
Q 009266 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (538)
Q Consensus 275 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~ 353 (538)
+|++-+ ++.+++||++.. .+++....+......-+.++| ||
T Consensus 378 ~LlSRg~D~tLKvWDLrq~-------------------------------------kkpL~~~tgL~t~~~~tdc~F-SP 419 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQF-------------------------------------KKPLNVRTGLPTPFPGTDCCF-SP 419 (641)
T ss_pred hhhhccCCCceeeeecccc-------------------------------------ccchhhhcCCCccCCCCcccc-CC
Confidence 999987 679999999875 334444555444444667888 99
Q ss_pred CCcEEEEecc------CCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 354 KCEYVVSGSD------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 354 ~~~~l~~gs~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
+.++|++|+. .|++.+|+..+...+..+......|..+.|+|.-+.|+.++.||+++||
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 9999999864 4789999999999999988778899999999999999999999999986
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.4e-36 Score=260.86 Aligned_cols=276 Identities=20% Similarity=0.239 Sum_probs=233.4
Q ss_pred CCCCCCceEEeeccCCceEEeeecc-CceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
|||..+.+|++++.|+.|+||++.. +.+ ++++.+|..+|..++|+++|..++|+|.|+
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~---------------------lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRC---------------------LRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcce---------------------ehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 6777899999999999999999986 444 588999999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCC-ceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
.|++||+++|+++.++.. ...++|+.|.| ++ +.+++|+.++.|+.||+++++.+.. +..|.+.|..+.|-+.+
T Consensus 281 ~lKlwDtETG~~~~~f~~--~~~~~cvkf~p--d~~n~fl~G~sd~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL--DKVPTCVKFHP--DNQNIFLVGGSDKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEG 354 (503)
T ss_pred eeeeeccccceEEEEEec--CCCceeeecCC--CCCcEEEEecCCCcEEEEeccchHHHHH--HHhhhhheeeeEEccCC
Confidence 999999999999988843 34789999999 76 8899999999999999999987766 88899999999999999
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
..+++++.+++++||+.+.+..++.+.... ...+.++..+|. +.++++-+.+..|.+|.+...-.
T Consensus 355 -~rFissSDdks~riWe~~~~v~ik~i~~~~---------~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r---- 419 (503)
T KOG0282|consen 355 -RRFISSSDDKSVRIWENRIPVPIKNIADPE---------MHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFR---- 419 (503)
T ss_pred -ceEeeeccCccEEEEEcCCCccchhhcchh---------hccCcceecCCC-CCeehhhccCceEEEEecccccc----
Confidence 689999999999999999887776654332 225789999997 78999999999999999754311
Q ss_pred CCCCCCcccCCCCccCCCc--cceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccc
Q 009266 243 DFGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
......+.+|. +.-..+.|||+|.+|++|. +|.+.+||.++
T Consensus 420 --------~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt---------------------------- 463 (503)
T KOG0282|consen 420 --------LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT---------------------------- 463 (503)
T ss_pred --------cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh----------------------------
Confidence 11223333343 4567789999999999998 77999999987
Q ss_pred cCCCCCCCCcccCCceeeccccceeeeEEEEecCCC-cEEEEeccCCeEEEee
Q 009266 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWK 371 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~l~~gs~dg~i~iwd 371 (538)
...+..++.|... +..+.| +|.. ..||+++.+|.|++|+
T Consensus 464 ----------~kl~~~lkah~~~--ci~v~w-HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 ----------TKLVSKLKAHDQP--CIGVDW-HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ----------hhhhhccccCCcc--eEEEEe-cCCCcceeEecccCceeEecC
Confidence 5567788888776 889999 7754 5899999999999996
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.7e-34 Score=230.06 Aligned_cols=286 Identities=20% Similarity=0.237 Sum_probs=240.3
Q ss_pred eEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
+.+++|...|.+++|+.+|..|++|+.++++++|++...+..... ..+|.+.|-.++|.| .....|++++.+.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~-~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDP-KHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCC-CCCcceEEecCCceEEEE
Confidence 567899999999999999999999999999999999877544332 368999999999998 367899999999999999
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
+++.+++...... +..=.-+.|+|++ .+++.+..|..|.+.|.++.+.....+. ...+.-++|+.
T Consensus 93 d~r~~k~~~~i~~---~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~-----------~~e~ne~~w~~ 157 (313)
T KOG1407|consen 93 DIRSGKCTARIET---KGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQF-----------KFEVNEISWNN 157 (313)
T ss_pred EeccCcEEEEeec---cCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhcc-----------cceeeeeeecC
Confidence 9999988776332 2333467899999 6889999999999999999887766653 23678899987
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCC
Q 009266 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMG 292 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~ 292 (538)
. +.+|+.....|.|.|......+ +...+..|.....|+.|+|+|++||+|+.+ .+.+||+..
T Consensus 158 ~-nd~Fflt~GlG~v~ILsypsLk---------------pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E- 220 (313)
T KOG1407|consen 158 S-NDLFFLTNGLGCVEILSYPSLK---------------PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE- 220 (313)
T ss_pred C-CCEEEEecCCceEEEEeccccc---------------cccccccCCcceEEEEECCCCceEeeccccceeeccChhH-
Confidence 6 5677777778999999988765 455566788999999999999999999966 799999986
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
..+.+.+..+.-+ |..+.| |.+|++||+||.|..|-|=.+
T Consensus 221 -------------------------------------LiC~R~isRldwp--VRTlSF-S~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 221 -------------------------------------LICERCISRLDWP--VRTLSF-SHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred -------------------------------------hhhheeeccccCc--eEEEEe-ccCcceeeccCccceEEeEec
Confidence 4566777777776 999999 999999999999999999999
Q ss_pred cCcceeEEeecCcceeeEEeecCCCCeEEEeecC---------CceEEecC
Q 009266 373 KGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---------SDIKILTP 414 (538)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~v~vw~~ 414 (538)
++|..+..++ +.++...++|+|...+||-++.| |.|++|-+
T Consensus 261 etGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 261 ETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 9999998887 67899999999999999988765 45666544
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-35 Score=236.12 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=233.1
Q ss_pred EEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec
Q 009266 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~ 135 (538)
.|+||..+|+.|.|+.+|.+|.+++.|.++.||-..+|+.+.++ .+|.+.|+|+.... +.++|++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~--~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDW--DSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecC--CcceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999998889999988 89999999999998 9999999999999999999
Q ss_pred ccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEc-----CCCcEEEEecCCC-------CeeeeeeecccCCCCCccee
Q 009266 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-----EDGLVQHFDLRTG-------AATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~ 203 (538)
.+++++.... ...+|..+.|++.+ ++++.+. ..+.|.+++++.. .+...+.. +.
T Consensus 82 ~tGk~la~~k---~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t----------~~ 147 (327)
T KOG0643|consen 82 ETGKQLATWK---TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT----------PD 147 (327)
T ss_pred CCCcEEEEee---cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC----------Cc
Confidence 9999987633 45789999999999 4555443 3467999999833 33434433 33
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-C
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E 282 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~ 282 (538)
..++.+.|.|- +.+|++|..+|.|.+||+++++. .......|...|+.|+++|+..++++++. .
T Consensus 148 skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~--------------~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 148 SKITSALWGPL-GETIIAGHEDGSISIYDARTGKE--------------LVDSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred cceeeeeeccc-CCEEEEecCCCcEEEEEcccCce--------------eeechhhhccccccccccCCcceEEecccCc
Confidence 47899999998 78999999999999999999753 22333456779999999999999999995 4
Q ss_pred eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec
Q 009266 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (538)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs 362 (538)
+-++||+.+ ...++++.... +|++.++ +|-..+++.|+
T Consensus 213 takl~D~~t--------------------------------------l~v~Kty~te~---PvN~aai-sP~~d~VilgG 250 (327)
T KOG0643|consen 213 TAKLVDVRT--------------------------------------LEVLKTYTTER---PVNTAAI-SPLLDHVILGG 250 (327)
T ss_pred cceeeeccc--------------------------------------eeeEEEeeecc---cccceec-ccccceEEecC
Confidence 899999987 44555555443 3888888 89877777655
Q ss_pred cCC--------------eEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 363 DCG--------------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 363 ~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
.-. .-++|++-..+.+..+++|-++|++++|+|+|+..+||+.||.||+..+..
T Consensus 251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 321 123344434456678899999999999999999999999999999986543
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.9e-36 Score=238.67 Aligned_cols=280 Identities=18% Similarity=0.275 Sum_probs=239.8
Q ss_pred CCCCCC--CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEe
Q 009266 2 DDASNN--NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (538)
Q Consensus 2 ~~a~~~--~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~ 79 (538)
|.+|.+ |++-+|++++.|+.-.+-+-.||..+ -++.||++.|++..+..+...-|++
T Consensus 19 dl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi---------------------gtfeghkgavw~~~l~~na~~aasa 77 (334)
T KOG0278|consen 19 DLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI---------------------GTFEGHKGAVWSATLNKNATRAASA 77 (334)
T ss_pred EEeccCCCCCceEEEEeccCCCchhccCCCCCcE---------------------EeeeccCcceeeeecCchhhhhhhh
Confidence 456654 88999999999999999999999886 6799999999999999998899999
Q ss_pred cCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 80 ~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
+.|-+-+||+.-+|..++.+ .|..-|.+++|+. +.++|++|+.+..+|||+++..+..+ ..+.+|++.|+.+.|.
T Consensus 78 aadftakvw~a~tgdelhsf--~hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc 152 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWC 152 (334)
T ss_pred cccchhhhhhhhhhhhhhhh--hhhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEe
Confidence 99999999999999999988 5888999999999 99999999999999999998877655 3588999999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcccc
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (538)
... +.|++++.+++||+||.+++..++.+.. +.+|+++.++++ +.+| +....+.|.+||..+..++
T Consensus 153 ~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~-----------~s~VtSlEvs~d-G~il-Tia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 153 HED-KCILSSADDKTVRLWDHRTGTEVQSLEF-----------NSPVTSLEVSQD-GRIL-TIAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred ccC-ceEEeeccCCceEEEEeccCcEEEEEec-----------CCCCcceeeccC-CCEE-EEecCceeEEeccccccce
Confidence 877 6788889999999999999999999884 347999999998 5554 4556688999999987754
Q ss_pred CCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCcc
Q 009266 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
+...+ ...|.+..++|+..++++|+.+ .++.||..++
T Consensus 219 Ks~k~----------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-------------------------- 256 (334)
T KOG0278|consen 219 KSYKM----------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG-------------------------- 256 (334)
T ss_pred eeccC----------------ccccccccccCCCceEEecCcceEEEEEeccCC--------------------------
Confidence 44222 4578899999998888888854 8999999985
Q ss_pred ccCCCCCCCCcccCCcee-eccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCccee
Q 009266 319 AASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~ 378 (538)
..+..+ ++|.++ |.+|.| +|+|...|+||.||+|+||.+..++..
T Consensus 257 ------------eEi~~~nkgh~gp--VhcVrF-SPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 257 ------------EEIGSYNKGHFGP--VHCVRF-SPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ------------ceeeecccCCCCc--eEEEEE-CCCCceeeccCCCceEEEEEecCCCch
Confidence 333344 788887 999999 999999999999999999998766543
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.6e-33 Score=255.44 Aligned_cols=273 Identities=27% Similarity=0.433 Sum_probs=229.8
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.++|++++|++++.+|.|++|++.+++. ...+..|...+.++.|+|++++|++++.++.
T Consensus 16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 16 AFSPDGKLLATGSGDGTIKVWDLETGEL---------------------LRTLKGHTGPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred EEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------EEEEecCCcceeEEEECCCCCEEEEEcCCCe
Confidence 3567889999999999999999997764 3567789999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|++|++.+++.+..+ ..|...|.++.|+| ++.++++++.++.|++|++.+++.... +..|...|.+++|+|++ .
T Consensus 75 i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~ 148 (289)
T cd00200 75 IRLWDLETGECVRTL-TGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVETGKCLTT--LRGHTDWVNSVAFSPDG-T 148 (289)
T ss_pred EEEEEcCcccceEEE-eccCCcEEEEEEcC--CCCEEEEecCCCeEEEEECCCcEEEEE--eccCCCcEEEEEEcCcC-C
Confidence 999999988777766 68888999999999 888888888899999999987666554 66788999999999987 6
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (538)
++++++.++.|++|++++++....+.. +...+.+++|+|+ +..+++++.++.|++|+++.++..
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~----- 212 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTG----------HTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCL----- 212 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEec----------CccccceEEECCC-cCEEEEecCCCcEEEEECCCCcee-----
Confidence 888888899999999998887776663 3337999999997 678888888999999999876532
Q ss_pred CCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 009266 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (538)
.....+...+.+++|+|++.++++++ ++.|++|++.++
T Consensus 213 ----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~------------------------------- 251 (289)
T cd00200 213 ----------GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG------------------------------- 251 (289)
T ss_pred ----------cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-------------------------------
Confidence 22223566899999999999999988 889999998762
Q ss_pred CCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
.....+..|... +.+++| +|++++|++++.+|.|++|+
T Consensus 252 -------~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 -------ECVQTLSGHTNS--VTSLAW-SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -------eeEEEccccCCc--EEEEEE-CCCCCEEEEecCCCeEEecC
Confidence 334455566654 899998 99999999999999999996
No 59
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-34 Score=245.90 Aligned_cols=279 Identities=19% Similarity=0.247 Sum_probs=228.9
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-|+++|++||+++.|.+..||.+.... ++++.+++.+|..+|..+.||||.++|++|+.+..
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDV------------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCc------------------ceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 388999999999999999999987332 35778999999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccc-cCCCcEEEEEcCCCC
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-HQGRAHKLAIEPGSP 163 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 163 (538)
+++||+.+|.+.+.+..+|...+.+++|.| +|..+++|+.|+++..|++..... .. ..+ ....|.++++.++|
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-~~--W~gvr~~~v~dlait~Dg- 366 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-GN--WEGVRDPKVHDLAITYDG- 366 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh-hc--ccccccceeEEEEEcCCC-
Confidence 999999999998888777788999999999 999999999999999999875432 11 222 22468999999999
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 243 (538)
..+++.+.|..|++|+..+......+.. ..+|++++++.+ ++++++.-.+..|++||+...++...
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise-----------~~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~lv~k-- 432 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISE-----------EQPITSFSISKD-GKLALVNLQDQEIHLWDLEENKLVRK-- 432 (519)
T ss_pred cEEEEEecccceeeechhhhhhhccccc-----------cCceeEEEEcCC-CcEEEEEcccCeeEEeecchhhHHHH--
Confidence 5777778999999999988776655553 237999999997 78999999999999999997654322
Q ss_pred CCCCCcccCCCCccCCC-ccceEEEEEcC-CCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 244 FGQPADYFCPPNLIGDE-QVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~-~~~i~~~~~s~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
..++. ...+..-+|-- +..++++|+ +++|+||+..+
T Consensus 433 ------------Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s----------------------------- 471 (519)
T KOG0293|consen 433 ------------YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS----------------------------- 471 (519)
T ss_pred ------------hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-----------------------------
Confidence 12211 22344555654 457999999 55999999887
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCC-CcEEEEeccCCeEEEeeccC
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~-~~~l~~gs~dg~i~iwd~~~ 374 (538)
++++..+.||... |++|+| +|. ..++|+|+.||+||||-...
T Consensus 472 ---------gkll~~LsGHs~~--vNcVsw-NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 472 ---------GKLLAVLSGHSKT--VNCVSW-NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ---------CceeEeecCCcce--eeEEec-CCCCHHHhhccCCCCeEEEecCCc
Confidence 5678889999976 999999 775 46899999999999998753
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=269.05 Aligned_cols=259 Identities=20% Similarity=0.338 Sum_probs=211.1
Q ss_pred eeeeeEEc-CCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--------------------------------C----
Q 009266 51 LGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT--------------------------------E---- 93 (538)
Q Consensus 51 ~~~~~~~~-~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~--------------------------------~---- 93 (538)
+...+.+. +|.+.|++|.||++|+|||+||.|+.|+||.+.. .
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 35566677 9999999999999999999999999999998754 0
Q ss_pred ------------------------ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeecccc
Q 009266 94 ------------------------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH 149 (538)
Q Consensus 94 ------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 149 (538)
++++. +.+|.+.|..|.|+ ..++|++++.|.+||||.+....++.. | .|
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~e-f~GHt~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~--F-~H 408 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCE-FKGHTADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKV--F-SH 408 (712)
T ss_pred ccccccccCCccccCCCccccccccchhh-hhccchhheecccc---cCCeeEeccccccEEeecCCCcceeeE--E-ec
Confidence 01122 37899999999999 578999999999999999998888765 3 59
Q ss_pred CCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEE
Q 009266 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (538)
Q Consensus 150 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 229 (538)
...|+||+|+|-..++|++|+-||.||||++...+.+.-..++. -|++++|.|+ |+..++|+.+|.++
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-----------lITAvcy~Pd-Gk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-----------LITAVCYSPD-GKGAVIGTFNGYCR 476 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh-----------hheeEEeccC-CceEEEEEeccEEE
Confidence 99999999999888999999999999999999888776655443 5999999998 89999999999999
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC--CEEEEEcCCeEEEeeccCCCCCCCCCCCCccccc
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (538)
+|++...++.....+.. ..........|+++.|.|.. ++|++..+.+|+|||.+.
T Consensus 477 fY~t~~lk~~~~~~I~~-------~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~---------------- 533 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRL-------HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD---------------- 533 (712)
T ss_pred EEEccCCeEEEeeeEee-------ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc----------------
Confidence 99999887654432211 11111112389999999854 477777788999999976
Q ss_pred cccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccC
Q 009266 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~ 374 (538)
...+..|+|+.+...-....| +.+|++|++|+.|..|+||++..
T Consensus 534 ----------------------~~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 534 ----------------------KDLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ----------------------hhhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEEEeCCC
Confidence 456778888776655566777 88999999999999999999743
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.4e-34 Score=236.53 Aligned_cols=297 Identities=13% Similarity=0.223 Sum_probs=232.4
Q ss_pred eEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-----------------CceeeeeccCCCCCeEEEEEeecCC
Q 009266 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-----------------ERVKLSFHSGHNDNVFQAKIMPFTD 117 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~-----------------~~~~~~~~~~~~~~v~~l~~~~~~~ 117 (538)
..+..|+.++.+.+|+|+|.++|||+.|..|+|.+++. +.++.+.+-.|...|+++.|+| .
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP--r 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP--R 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc--h
Confidence 45678999999999999999999999999999999861 1133333468999999999999 9
Q ss_pred CceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCC
Q 009266 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (538)
Q Consensus 118 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (538)
...|++++.|++|++||+................+|++|.|+|.| .+|++|..-.++++||+.+-++...-..
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanP------ 256 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANP------ 256 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCc------
Confidence 999999999999999999765544433344456789999999999 6889999999999999999887644331
Q ss_pred CCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC-ccceEEEEEcCCCCEE
Q 009266 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELL 276 (538)
Q Consensus 198 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l 276 (538)
...+...|+++.+++. +++.++++.||.|+|||--+++ |...+...| ...|.++.|..+|++|
T Consensus 257 -d~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~r--------------Cv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 257 -DDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNR--------------CVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred -ccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHH--------------HHHHHHhhcCCceeeeEEEccCCeEE
Confidence 1226668999999997 8999999999999999988876 444444434 4679999999999999
Q ss_pred EEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccc--cce-eeeEEEEec
Q 009266 277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR--NCV-TVKGVNFFG 352 (538)
Q Consensus 277 ~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~i~~v~~~s 352 (538)
++.+ +..+++|.+.++.. ++.+.|.. +.. .-+...| .
T Consensus 321 LsSG~DS~vkLWEi~t~R~--------------------------------------l~~YtGAg~tgrq~~rtqAvF-N 361 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRM--------------------------------------LKEYTGAGTTGRQKHRTQAVF-N 361 (430)
T ss_pred eecCCcceeeeeeecCCce--------------------------------------EEEEecCCcccchhhhhhhhh-c
Confidence 9888 45899999998543 33333321 000 0122333 5
Q ss_pred CCCcEEEEecc-CCeEEEeeccCcceeEEee-cCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 353 PKCEYVVSGSD-CGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 353 ~~~~~l~~gs~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
....|++.-.. .+.+.-||..++..+..+. +|.+.++.+.-||.++-+++|+.|..+|+|--+
T Consensus 362 htEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 362 HTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 66666665433 4678899999887765553 799999999999999999999999999999643
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=252.12 Aligned_cols=287 Identities=21% Similarity=0.280 Sum_probs=236.9
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCce-eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
....+..|.+.|..+.|-++...|+||+.|..|++|++..++. ....+.+..++|+.+.|.+ ++.++++++.|+.++
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~--~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS--DNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC--CCceEEeecCCCcee
Confidence 3456788999999999999988999999999999999876662 2333478888999999999 999999999999999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
+|++...+...+ +.+|+..|+++.|.... ..+++|+.|.+|++||+....+.+.+.. ...+..|+.
T Consensus 245 ~Wnvd~~r~~~T--LsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~-----------~S~cnDI~~ 310 (459)
T KOG0288|consen 245 LWNVDSLRLRHT--LSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLP-----------GSQCNDIVC 310 (459)
T ss_pred eeeccchhhhhh--hcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccc-----------cccccceEe
Confidence 999988776655 89999999999999876 4489999999999999999888776652 235667776
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeecc
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (538)
++ ..+++|..|++|++||+++...... .. ..+.|+++..+++|..|.+++ ++.+.+.|++
T Consensus 311 ~~---~~~~SgH~DkkvRfwD~Rs~~~~~s---------------v~-~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 311 SI---SDVISGHFDKKVRFWDIRSADKTRS---------------VP-LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred cc---eeeeecccccceEEEeccCCceeeE---------------ee-cCcceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 63 5899999999999999998763222 11 235899999999998887777 7799999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec--cccceeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
+... .+++.. .....-.+.+.| ||++.|+|+||.||.|+
T Consensus 372 t~eI--------------------------------------~~~~sA~g~k~asDwtrvvf-Spd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 372 TKEI--------------------------------------RQTFSAEGFKCASDWTRVVF-SPDGSYVAAGSADGSVY 412 (459)
T ss_pred cccE--------------------------------------EEEeeccccccccccceeEE-CCCCceeeeccCCCcEE
Confidence 7422 222222 111222678888 99999999999999999
Q ss_pred EeeccCcceeEEeecCcc--eeeEEeecCCCCeEEEeecCCceEEec
Q 009266 369 IWKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999998876554 599999999999999999999999994
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=222.82 Aligned_cols=272 Identities=17% Similarity=0.216 Sum_probs=224.9
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+=|+-+|++.+|++.|.+||+|++..|.++ ++..+|...|..++.+.++..|++|+.|+
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~li---------------------ktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALI---------------------KTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeeccccccee---------------------eeecCCCceeeeccccccccccccCCCCc
Confidence 347789999999999999999999988886 78999999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
.|.+||+.+|+.++++ .+|.+.|+.++|+. +...+++|+.|.+|++||-++....+.+.+......|.++.+..
T Consensus 82 ~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--- 155 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--- 155 (307)
T ss_pred eEEEEEcccCeeeeec-ccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc---
Confidence 9999999999999998 89999999999998 89999999999999999999887777677888889999999886
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 243 (538)
+.|++|+.||++|.||++.++...-+..+ +|++++|+++ ++..++++.+++|++.|-.++++++.+.
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~g~------------pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sYk 222 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYFGH------------PITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSYK 222 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhcCC------------cceeEEecCC-CCEEEEeeccceeeecccchhHHHHHhc
Confidence 56999999999999999999876655432 7999999998 7999999999999999999998654322
Q ss_pred CCCCCcccCCCCccCCCc--cceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 244 FGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
+|. ..-...+++.....+++++ +|.|++|++....
T Consensus 223 ---------------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~--------------------------- 260 (307)
T KOG0316|consen 223 ---------------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET--------------------------- 260 (307)
T ss_pred ---------------ccccceeeeeeeecccceeEEeccCCceEEEEEeccce---------------------------
Confidence 222 2234456777778889998 6799999997642
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
.+..+..+. .+.+..+.+ +|.-..|+++.. +.+..|-
T Consensus 261 -----------~~sk~~~~~-~v~v~dl~~-hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 261 -----------QISKLSVVS-TVIVTDLSC-HPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred -----------eeeeeccCC-ceeEEeeec-ccCccceeEecC-Cceecee
Confidence 223333333 234788888 887776666653 3455554
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=246.25 Aligned_cols=285 Identities=16% Similarity=0.202 Sum_probs=238.3
Q ss_pred cCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 61 ~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
...|++++|+|... -+|+.+. -.+.||+..+.....++ ......|+++.|.. ||.+|++|...|.|+|+|+.+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeec--CCeEEEccCCcCcEEEeccccHH
Confidence 46899999999543 3444443 47999998887776666 56778899999998 99999999999999999966544
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 219 (538)
.+. .+.+|+.+|..+.|+|.+..+|++|+.|+.+++||+.+......+.. |...|+|.+|+|.++.++
T Consensus 102 iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~----------htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 102 ILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG----------HTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC----------CcceeEeeccccCCCeEE
Confidence 443 48899999999999999988999999999999999998875334443 445899999999988899
Q ss_pred EEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCC
Q 009266 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP 299 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~ 299 (538)
++|+.||+|++||++... .....-.|..+|.++.+-|.|.++++++...|++||+.++
T Consensus 170 vtGsYDg~vrl~DtR~~~---------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G------- 227 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLT---------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG------- 227 (487)
T ss_pred EecCCCceEEEEEeccCC---------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC-------
Confidence 999999999999999863 1233335678999999999999999999999999999876
Q ss_pred CCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeE
Q 009266 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (538)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~ 379 (538)
++.+..+..|... |+|+++ ..+++.|++|+-|+.|++|++.+.+.+.
T Consensus 228 ------------------------------~qll~~~~~H~Kt--VTcL~l-~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 228 ------------------------------GQLLTSMFNHNKT--VTCLRL-ASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred ------------------------------ceehhhhhcccce--EEEEEe-ecCCceEeecccccceEEEEccceEEEE
Confidence 4445555557664 999999 7789999999999999999999999998
Q ss_pred EeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 380 VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 380 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
.+. -.++|.+++.+|+++.++.|..+|.+.+-.....
T Consensus 275 s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 275 SWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred eee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 887 4679999999999999999999999887754433
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-33 Score=226.42 Aligned_cols=273 Identities=18% Similarity=0.230 Sum_probs=234.2
Q ss_pred cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEec
Q 009266 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (538)
Q Consensus 101 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (538)
.+|...|.+|+|+. +|..|++++.++++++|++...+........+|...|-.++|+|..+.+|++++.+.+|++||+
T Consensus 17 ~~~~~~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhhcceEEEEcc--cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 68999999999999 9999999999999999999887666666678999999999999999899999999999999999
Q ss_pred CCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC
Q 009266 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (538)
+++++...+... ..-.-+.|+|+ +.++++++.|..|.+.|.++.+.....+ .
T Consensus 95 r~~k~~~~i~~~-----------~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~----------------~ 146 (313)
T KOG1407|consen 95 RSGKCTARIETK-----------GENINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQ----------------F 146 (313)
T ss_pred ccCcEEEEeecc-----------CcceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhc----------------c
Confidence 999998887632 23466899998 7899999999999999999876433211 2
Q ss_pred ccceEEEEEcCCCCEE-EEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecc
Q 009266 261 QVGITGLAFSDQSELL-VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
...+.-++|+.++.++ ++.+.|+|.|..... .++++.++.|
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--------------------------------------Lkpv~si~AH 188 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS--------------------------------------LKPVQSIKAH 188 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCceEEEEeccc--------------------------------------cccccccccC
Confidence 4467788888766654 555568999988765 5677888999
Q ss_pred ccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 340 ~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
... +.++.| +|+|+|+|+|+.|..+.+||+...-+++.+..+.-+|+.|.||.+|++||+||.|..|-|=.+.+|..
T Consensus 189 ~sn--CicI~f-~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 189 PSN--CICIEF-DPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred Ccc--eEEEEE-CCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 876 889998 99999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCccceeeeecc--cCc-eeeeccCC
Q 009266 420 ATLPTNIEQVLIPD--HIR-WFALGDDD 444 (538)
Q Consensus 420 ~~~~~~~~~~~~~~--~~~-~l~s~~~d 444 (538)
..-..+.++...++ |.. .|+-+.++
T Consensus 266 ~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 266 VWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEEeeccCCceeEEecCCCceeeEEecC
Confidence 77777888888887 777 66655443
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=243.81 Aligned_cols=289 Identities=19% Similarity=0.267 Sum_probs=236.3
Q ss_pred eeeeEEcCCcCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcE
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
+.+..|.||...|.|++=+|.. ..+|+|+.||.|+|||+.+..++.++ .+|.+.|..|++.. ..+++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~----~~~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ----TSFFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc----cceEEecCCcce
Confidence 5677889999999999999976 78999999999999999999888888 89999999999974 789999999999
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
+.|.+... ..+++. ....+..|.-+..+ ..++|||. .|.|||.....+++.+.... ..|.++.
T Consensus 132 K~wk~~~~---p~~til-g~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~----------Dti~svk 194 (433)
T KOG0268|consen 132 KQWKIDGP---PLHTIL-GKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGA----------DSISSVK 194 (433)
T ss_pred eeeeccCC---cceeee-cccccccccccccc-ccccccCc--eeeecccccCCccceeecCC----------CceeEEe
Confidence 99998753 222232 23456666666656 67899886 59999999888888887643 2689999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeec
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQ 289 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~ 289 (538)
|+|-...+|++++.|+.|.|||+++.+.+.... ....-+.|+|+|.+-.+++++.+ +++.||+
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi----------------~~mRTN~IswnPeafnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVI----------------LTMRTNTICWNPEAFNFVAANEDHNLYTYDM 258 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceee----------------eeccccceecCccccceeeccccccceehhh
Confidence 999877889999999999999999976432211 12355789999977777888855 8999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEE
Q 009266 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (538)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~i 369 (538)
+.. ..++..+.+|.+. |..|.| ||.|+-+++||.|.+|+|
T Consensus 259 R~l-------------------------------------~~p~~v~~dhvsA--V~dVdf-sptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 259 RNL-------------------------------------SRPLNVHKDHVSA--VMDVDF-SPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred hhh-------------------------------------cccchhhccccee--EEEecc-CCCcchhccccccceEEE
Confidence 864 4567788889887 999999 999999999999999999
Q ss_pred eeccCcceeEEeec-CcceeeEEeecCCCCeEEEeecCCceEEecCCCCc
Q 009266 370 WKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 370 wd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 418 (538)
|.+..+.....+.. .-..|.++.||.+.+++++||.|++|++|.....+
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99987755433321 12579999999999999999999999999876543
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-33 Score=222.92 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=215.8
Q ss_pred cCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCCc-e
Q 009266 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTER-V 95 (538)
Q Consensus 18 ~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~~-~ 95 (538)
..|++.|.++..++-+ ...+.+. -...+..++|++. ...+++++.||+++||++.... +
T Consensus 36 G~G~L~ile~~~~~gi------------------~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P 96 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGI------------------QECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP 96 (311)
T ss_pred cCceEEEEecCCCCCe------------------EEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcc
Confidence 4578888887533322 2233333 4678999999995 4688899999999999975443 4
Q ss_pred eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcE
Q 009266 96 KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (538)
Q Consensus 96 ~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (538)
++.+ +.|...|.++.|++ .....+++++.|++|++|+...+..+.+ +.+|...|...+|+|..++++++++.|+++
T Consensus 97 i~~~-kEH~~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~T--f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l 172 (311)
T KOG0277|consen 97 IHKF-KEHKREVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQT--FNGHNSCIYQAAFSPHIPNLFASASGDGTL 172 (311)
T ss_pred hhHH-HhhhhheEEecccc-ccceeEEeeccCCceEeecCCCCcceEe--ecCCccEEEEEecCCCCCCeEEEccCCceE
Confidence 4545 89999999999998 3677888889999999999988887776 999999999999999999999999999999
Q ss_pred EEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCC
Q 009266 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (538)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
++||++.......+..| ...+.++.|+.-+.++|++|+.|+.|++||+++.+.
T Consensus 173 ~lwdvr~~gk~~~i~ah----------~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~----------------- 225 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSIEAH----------NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT----------------- 225 (311)
T ss_pred EEEEecCCCceeEEEec----------cceeEeecccccCCcEEEecCCCceEEEEehhhccc-----------------
Confidence 99999977555556554 347999999998889999999999999999998541
Q ss_pred ccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCce
Q 009266 256 LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV 335 (538)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (538)
++..
T Consensus 226 ----------------------------------------------------------------------------pl~e 229 (311)
T KOG0277|consen 226 ----------------------------------------------------------------------------PLFE 229 (311)
T ss_pred ----------------------------------------------------------------------------ccee
Confidence 1223
Q ss_pred eeccccceeeeEEEEecCCC-cEEEEeccCCeEEEeeccCc-ceeEEeecCcceeeEEeecCCC-CeEEEeecCCceEEe
Q 009266 336 YKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKIL 412 (538)
Q Consensus 336 ~~~~~~~~~i~~v~~~s~~~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~vw 412 (538)
+.+|.-. |..|.| ||.. .+||+++.|-++|||+.... .++.+...|+.-|..+.||+-. .++|+++.|..++||
T Consensus 230 L~gh~~A--VRkvk~-Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw 306 (311)
T KOG0277|consen 230 LNGHGLA--VRKVKF-SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVW 306 (311)
T ss_pred ecCCceE--EEEEec-CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeee
Confidence 3445544 777777 7754 58899999999999998744 5566777899999999999864 489999999999999
Q ss_pred cC
Q 009266 413 TP 414 (538)
Q Consensus 413 ~~ 414 (538)
+.
T Consensus 307 ~p 308 (311)
T KOG0277|consen 307 NP 308 (311)
T ss_pred cc
Confidence 85
No 68
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=254.54 Aligned_cols=384 Identities=15% Similarity=0.190 Sum_probs=291.4
Q ss_pred CceEEeeccCCceEEeeeccCceeccccch---------------hhcccccceEEe------eeeeEEcCCcCcEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFAL---------------RRRASEDLVLRL------GIYAKLDKHRGCVNTVS 68 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~---------------~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~ 68 (538)
=+.++.|+..|.++||++.+++++.+.... ++.+..++.+.+ +.+..++.-.++|++++
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS 251 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence 345899999999999999999998762111 444555555444 66777874469999999
Q ss_pred EcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee--eeee
Q 009266 69 FNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--ETKL 145 (538)
Q Consensus 69 ~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~--~~~~ 145 (538)
|..||. .||+|+..|.+.+||++..+.+..+...|.+.|..+.|.| ....|++++.|+.+++|=..++... ..+.
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~--~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~ 329 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP--GEPVLVTAGADNSLKVWVFDSGDGVPRLLRS 329 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC--CCceEeeccCCCceeEEEeeCCCCcchheee
Confidence 999986 5677777899999999998888888789999999999999 8899999999999999977755442 2234
Q ss_pred ccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeee-------------------------------------
Q 009266 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL------------------------------------- 188 (538)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------------- 188 (538)
-.+|..+..||.|.-...+.+.+++.|++++.+++......+.
T Consensus 330 R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~ 409 (910)
T KOG1539|consen 330 RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREK 409 (910)
T ss_pred ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhh
Confidence 5689999999999954448899999999888887642110000
Q ss_pred -----eeecccC-----------CCCCc--------ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCC
Q 009266 189 -----FTCRPID-----------DRRNY--------MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (538)
Q Consensus 189 -----~~~~~~~-----------~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (538)
+.+|... ....| .....+++++.++. |++.+.|+..|.|-+|+++++-..+.+.
T Consensus 410 ~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~- 487 (910)
T KOG1539|consen 410 EWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFG- 487 (910)
T ss_pred hhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccc-
Confidence 0000000 00000 01256889999997 8999999999999999999985433211
Q ss_pred CCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 009266 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (538)
....|..+|++++...-++.+++++ +|-++.|+.....
T Consensus 488 -----------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~------------------------------ 526 (910)
T KOG1539|consen 488 -----------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV------------------------------ 526 (910)
T ss_pred -----------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc------------------------------
Confidence 1235788999999999888888877 7899999988632
Q ss_pred CCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEe
Q 009266 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
.+..+.-.. .+..+.+ +.....+|.+..+-.|+++|..+.+.++.|.+|...|+.++|||+|++|+++
T Consensus 527 --------l~~~l~l~~---~~~~iv~-hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 527 --------LKKSLRLGS---SITGIVY-HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred --------eeeeeccCC---Ccceeee-eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 222222211 2566666 6677789999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEecCCCCcccccCccceeeeecc--cCc-eeeeccCCC-CCcee
Q 009266 404 GIESDIKILTPNAADRATLPTNIEQVLIPD--HIR-WFALGDDDD-GDYYF 450 (538)
Q Consensus 404 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~d~-~~~~~ 450 (538)
+.|++||+||+.++.+.-...-.....++. |.+ +|+++..+. ..|.|
T Consensus 595 smD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred ecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 999999999999988765444444444444 666 999999884 66666
No 69
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-32 Score=223.57 Aligned_cols=277 Identities=14% Similarity=0.210 Sum_probs=223.3
Q ss_pred cCCcCcEEEEEEcC-CCCEEEEecCCCeEEEEECCC-CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec
Q 009266 58 DKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 58 ~~h~~~v~~~~~s~-~g~~l~t~~~d~~i~iw~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~ 135 (538)
....+.|.+|+||| ...+|+.+|.|++||+|+++. |..+.+....|.++|.+++|+. +|..+++|+.|+.+++||+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeeccCCceEEEEc
Confidence 34578999999999 556677999999999999986 5666666678999999999999 9999999999999999999
Q ss_pred ccCceeeeeeccccCCCcEEEEEcCCCC-cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 136 LERGGVETKLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
.+++... +..|..+|.++.|-+... ..|+||+.|.+|+.||++...++.++..+. .+.++..-.
T Consensus 102 ~S~Q~~~---v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-----------RvYa~Dv~~- 166 (347)
T KOG0647|consen 102 ASGQVSQ---VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-----------RVYAADVLY- 166 (347)
T ss_pred cCCCeee---eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-----------eeeehhccC-
Confidence 9985433 678999999999987552 378999999999999999998888877433 567666543
Q ss_pred CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCC
Q 009266 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (538)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (538)
.+++++..++.|.+|++++..... .......+..++|++..++....+.|+ .|++.+..+..+.
T Consensus 167 --pm~vVata~r~i~vynL~n~~te~-------------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~ 231 (347)
T KOG0647|consen 167 --PMAVVATAERHIAVYNLENPPTEF-------------KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN 231 (347)
T ss_pred --ceeEEEecCCcEEEEEcCCCcchh-------------hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC
Confidence 478888999999999998754211 111222356789999999887777777 8898888887643
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccc-------ceeeeEEEEecCCCcEEEEeccCCe
Q 009266 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGVNFFGPKCEYVVSGSDCGR 366 (538)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~v~~~s~~~~~l~~gs~dg~ 366 (538)
+.. -.+|+.|+. -..|++|+| +|.-..|++++.||+
T Consensus 232 ~~~------------------------------------nFtFkCHR~~~~~~~~VYaVNsi~F-hP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 232 PKD------------------------------------NFTFKCHRSTNSVNDDVYAVNSIAF-HPVHGTLVTAGSDGT 274 (347)
T ss_pred ccC------------------------------------ceeEEEeccCCCCCCceEEecceEe-ecccceEEEecCCce
Confidence 322 234444442 224889999 998889999999999
Q ss_pred EEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEe
Q 009266 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
+.+||-.....+++.+.|..+|++++|+.+|.++|-+
T Consensus 275 f~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 275 FSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999888899989999999999999999988765
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2e-31 Score=274.69 Aligned_cols=300 Identities=12% Similarity=0.106 Sum_probs=231.2
Q ss_pred CCeEEEEECCCCceeeeec----cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc----e--eeeeeccccCC
Q 009266 82 DRRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG----G--VETKLLGKHQG 151 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~----~--~~~~~~~~~~~ 151 (538)
+|.+++|+..+......+. ..|...|.+++|+| ++.+||+|+.|+.|+||++.... . .....+. +..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~ 533 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRS 533 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccC
Confidence 5778889887655433321 34899999999999 99999999999999999975421 1 0111122 346
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 231 (538)
.|.+++|+|....+|++++.||+|++||+.+++.+..+.. |...|++++|+|.++.+|++|+.||+|++|
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~----------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE----------HEKRVWSIDYSSADPTLLASGSDDGSVKLW 603 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC----------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEE
Confidence 7899999986557899999999999999999887776654 334799999998557899999999999999
Q ss_pred EcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEc-CCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccc
Q 009266 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (538)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (538)
|++++.... .+ . +...+.++.|+ ++|.+|++++ ++.|++||++..
T Consensus 604 d~~~~~~~~--------------~~-~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~----------------- 650 (793)
T PLN00181 604 SINQGVSIG--------------TI-K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP----------------- 650 (793)
T ss_pred ECCCCcEEE--------------EE-e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----------------
Confidence 998765321 11 1 13468899995 5789999888 669999998763
Q ss_pred cccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccC------cceeEEeec
Q 009266 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG------GELIRVIEA 383 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~------~~~~~~~~~ 383 (538)
......+.+|... |..+.| . ++.+|++++.|++|+||++.. .+++..+.+
T Consensus 651 --------------------~~~~~~~~~h~~~--V~~v~f-~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 651 --------------------KLPLCTMIGHSKT--VSYVRF-V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred --------------------CccceEecCCCCC--EEEEEE-e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC
Confidence 2234566778776 889998 5 678999999999999999974 367788999
Q ss_pred CcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc--------------ccCccceeeeecc--cCc-eeeeccCCCC
Q 009266 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA--------------TLPTNIEQVLIPD--HIR-WFALGDDDDG 446 (538)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~--------------~~~~~~~~~~~~~--~~~-~l~s~~~d~~ 446 (538)
|...++.++|+|++++||+|+.|+.|++|+....... ....+...|..+. +++ .|++++.+|.
T Consensus 707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 9999999999999999999999999999997654211 1122334455555 555 9999999998
Q ss_pred Cceee
Q 009266 447 DYYFY 451 (538)
Q Consensus 447 ~~~~~ 451 (538)
..+|.
T Consensus 787 I~i~~ 791 (793)
T PLN00181 787 IKILE 791 (793)
T ss_pred EEEEe
Confidence 87764
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-32 Score=217.78 Aligned_cols=288 Identities=18% Similarity=0.181 Sum_probs=224.9
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
|+.+|.+|.+++.|.++.||=..+|+.+ -++.||++.|+||....+.++|+||+.|.++
T Consensus 18 yN~eGDLlFscaKD~~~~vw~s~nGerl---------------------Gty~GHtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 18 YNREGDLLFSCAKDSTPTVWYSLNGERL---------------------GTYDGHTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred ecCCCcEEEEecCCCCceEEEecCCcee---------------------eeecCCCceEEEEEecCCcceeeecccccee
Confidence 6788999999999999999999889886 6799999999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC-----CCcEEEeecccCc-----eeeeeeccccCCCcEE
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQILERG-----GVETKLLGKHQGRAHK 155 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-----dg~v~vwd~~~~~-----~~~~~~~~~~~~~v~~ 155 (538)
+|||+.+|+++.++ ....+|..+.|++ +|++++.+.. .+.|.+++++... ..+...+..+...++.
T Consensus 77 kLWDv~tGk~la~~--k~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 77 KLWDVETGKQLATW--KTNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred EEEEcCCCcEEEEe--ecCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 99999999999888 3567899999999 8888877653 5789999998332 1122336678899999
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCCCCeeee-eeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
+.|.|-+ ..|++|..+|.|.+||++++..... ... |...|+.++++|+ ..++++++.|.+-++||.+
T Consensus 153 a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~----------h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 153 ALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEE----------HSSKINDLQFSRD-RTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred eeecccC-CEEEEecCCCcEEEEEcccCceeeechhh----------hccccccccccCC-cceEEecccCccceeeecc
Confidence 9999999 6899999999999999999855432 222 4458999999998 7999999999999999999
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-CeEEEeeccCCCCCCCCCCCCccccccccccC
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (538)
+..+.+++. ...++++.+++|....++.++. ...-|-...+......
T Consensus 221 tl~v~Kty~----------------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFE---------------- 268 (327)
T KOG0643|consen 221 TLEVLKTYT----------------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFE---------------- 268 (327)
T ss_pred ceeeEEEee----------------ecccccceecccccceEEecCCceeeeeeeecccccchh----------------
Confidence 987544322 1457899999998777666553 3222221111100000
Q ss_pred CCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
+.+-.......+..+++|-++ |++|+| +|+|+..++|+.||.|||....
T Consensus 269 --------ArFyh~i~eEEigrvkGHFGP--INsvAf-hPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 269 --------ARFYHLIFEEEIGRVKGHFGP--INSVAF-HPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred --------hhHHHHHHHHHhccccccccC--cceeEE-CCCCcccccCCCCceEEEEEec
Confidence 000000113456778899987 999999 9999999999999999997654
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2e-31 Score=229.98 Aligned_cols=283 Identities=15% Similarity=0.261 Sum_probs=240.0
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 141 (538)
..|+++...|....++||+.|..+.++|..+++.+..+ .||...|+.+.|+| +...+++++.+..|+||........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHK--DLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEecc--chhheeecCCcceEEeeccccccCc
Confidence 46888888888789999999999999999998887777 89999999999999 9999999999999999999877655
Q ss_pred eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
.. ...|..+|+.+..+|.| .+|++++.+++..+.+++++..+....... ....+++++|+|+ |.+|.+
T Consensus 297 ~~--~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~--------s~v~~ts~~fHpD-gLifgt 364 (506)
T KOG0289|consen 297 TS--SRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDET--------SDVEYTSAAFHPD-GLIFGT 364 (506)
T ss_pred cc--cccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeecc--------ccceeEEeeEcCC-ceEEec
Confidence 44 78899999999999999 689999999999999999999877665321 2346899999998 899999
Q ss_pred EeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCC
Q 009266 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPS 300 (538)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~ 300 (538)
|..||.|+|||+.+... ...+.+|.++|..++|+.+|.+|++++++ .|++||++...
T Consensus 365 gt~d~~vkiwdlks~~~---------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------- 422 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTN---------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------- 422 (506)
T ss_pred cCCCceEEEEEcCCccc---------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-------
Confidence 99999999999998752 33455689999999999999999999965 69999998743
Q ss_pred CCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc--Cccee
Q 009266 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK--GGELI 378 (538)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~--~~~~~ 378 (538)
..+++.-.... .+.++.| .+.|+||+.++.+=+|+++.-. +..++
T Consensus 423 -------------------------------n~kt~~l~~~~-~v~s~~f-D~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 423 -------------------------------NFKTIQLDEKK-EVNSLSF-DQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred -------------------------------ccceeeccccc-cceeEEE-cCCCCeEEeecceeEEEEEecccccceee
Confidence 33334333322 3889998 9999999999877667666633 56777
Q ss_pred EEeecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 379 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
..+..|.+..+++.|....++|+++|.|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 888889999999999999999999999999998764
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.5e-32 Score=229.11 Aligned_cols=301 Identities=15% Similarity=0.246 Sum_probs=231.0
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeec-CCCceEEEEeCCCcEEEeecccC
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTCAADGQVRHAQILER 138 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~~l~s~~~dg~v~vwd~~~~ 138 (538)
|...|.++... +++|+||++||.++||+.. |+.+.++ .+|.++|.+++|.-. .....|++++.|.++++|.++.+
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 77888888887 7899999999999999965 7887777 899999998888651 12235999999999999999877
Q ss_pred ceeeee--eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 139 GGVETK--LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 139 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
...... ...+|...|-++...+++ ..+++|+.|.+|+||+..+. ....+.. +.. -+. +
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~-~~~~~E~--------------~s~---~rr-k 239 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETD-EEDELES--------------SSN---RRR-K 239 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCC-ccccccc--------------cch---hhh-h
Confidence 654332 244999999999999999 78999999999999993322 1111110 000 000 0
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~ 295 (538)
+.- + ........|.....+|..+|.++.|++ ...+.+++ +.+|++||+.++.
T Consensus 240 ~~~--------------~----------~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~-- 292 (423)
T KOG0313|consen 240 KQK--------------R----------EKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG-- 292 (423)
T ss_pred hhh--------------h----------hhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc--
Confidence 000 0 001111235667778999999999999 55667777 6699999999853
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc
Q 009266 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
...++.+... ++++.+ +|..++||+|+.|..|++||.+++
T Consensus 293 ------------------------------------~~~~~~~~ks---l~~i~~-~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 293 ------------------------------------LKSTLTTNKS---LNCISY-SPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred ------------------------------------ceeeeecCcc---eeEeec-ccccceeeecCCCCceeecCCCCC
Confidence 3333443332 889998 999999999999999999998765
Q ss_pred c---eeEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCCCc--ccccCccceeeeecc-cCc-eeeeccCCCCC
Q 009266 376 E---LIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD--RATLPTNIEQVLIPD-HIR-WFALGDDDDGD 447 (538)
Q Consensus 376 ~---~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~-~~~-~l~s~~~d~~~ 447 (538)
. ...+|.+|++.|.++.|+|... +|++++.|+++++||+++.. +..+.+|...++++. ..+ .|++|+.|...
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l 412 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKL 412 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceE
Confidence 3 3478899999999999999887 68999999999999999865 467888999999988 555 99999999988
Q ss_pred ceee
Q 009266 448 YYFY 451 (538)
Q Consensus 448 ~~~~ 451 (538)
++|.
T Consensus 413 ~i~~ 416 (423)
T KOG0313|consen 413 RIFK 416 (423)
T ss_pred EEec
Confidence 8774
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-32 Score=223.78 Aligned_cols=306 Identities=15% Similarity=0.215 Sum_probs=251.5
Q ss_pred hhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCc
Q 009266 40 RRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119 (538)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 119 (538)
+++.-.+.+..+++++.+.||+..|+.++......++.+++.|.+.+||.+++|.++.++ .+|.+.|++|+|++ .+.
T Consensus 127 ivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~--s~~ 203 (481)
T KOG0300|consen 127 IVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHN--SGL 203 (481)
T ss_pred heeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEecc--ccc
Confidence 555566777888999999999999999999887789999999999999999999999998 89999999999999 999
Q ss_pred eEEEEeCCCcEEEeec------ccCc--------------------------------eeeeeeccccCCCcEEEEEcCC
Q 009266 120 SIVTCAADGQVRHAQI------LERG--------------------------------GVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 120 ~l~s~~~dg~v~vwd~------~~~~--------------------------------~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
++++++.|++..||.. ..+. .++...+.+|...|.+..|...
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 9999999999999972 1100 1233447789999999999998
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
+ +.+++++.|.+..+||++++..+..+..|. ..++-++-+|. .+++++++.|.+.++||++..-
T Consensus 284 g-~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd----------~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI---- 347 (481)
T KOG0300|consen 284 G-QQMVTASWDRTANLWDVETGEVVNILTGHD----------SELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAI---- 347 (481)
T ss_pred c-ceeeeeeccccceeeeeccCceeccccCcc----------hhccccccCCc-ceEEEEeccCceeEeccchhhc----
Confidence 8 678999999999999999999998887644 36788888996 7899999999999999998431
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
.....+.+|...|+++.|..+.+ +++++++ +|++|++++.
T Consensus 348 ----------~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM---------------------------- 388 (481)
T KOG0300|consen 348 ----------QSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM---------------------------- 388 (481)
T ss_pred ----------ceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccc----------------------------
Confidence 22456678899999999987765 5666655 8999999875
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEe-----ecCcceeeEEeecC
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEPHP 395 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~s~ 395 (538)
+.++.++..... ++.++. +..+..||.--.+..|++||+. |..+..+ ++|...|.|++|..
T Consensus 389 ---------RsplATIRtdS~---~NRvav-s~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 389 ---------RSPLATIRTDSP---ANRVAV-SKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred ---------cCcceeeecCCc---cceeEe-ecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccc
Confidence 344555554332 778887 7777899999889999999995 4444443 48889999999986
Q ss_pred CCC--eEEEeecCCceEEecCCCC
Q 009266 396 HST--VLASSGIESDIKILTPNAA 417 (538)
Q Consensus 396 ~~~--~l~s~~~dg~v~vw~~~~~ 417 (538)
.-. -|++|+.|..+.-|++...
T Consensus 455 ehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 455 EHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCcccccccccccceeeeeEeccc
Confidence 554 5899999999999998764
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.9e-31 Score=252.03 Aligned_cols=284 Identities=20% Similarity=0.289 Sum_probs=244.7
Q ss_pred eEEcC-CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 55 AKLDK-HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 55 ~~~~~-h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
+.+.+ |...|.+..|. ..++++++.+++|++|+..++..+..-+.+|.+.|+++++.. .+.+|++|+.|.++++|
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeE
Confidence 33443 56788999998 568999999999999999999998884589999999999986 78999999999999999
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
++.++.+... +.+|...|.++...+ .++++|+.|.+|++|++.++..+..+.. |..+|+++.++
T Consensus 277 d~~sg~C~~~--l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~----------h~~~V~~v~~~- 340 (537)
T KOG0274|consen 277 DCSTGECTHS--LQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRG----------HTGPVNCVQLD- 340 (537)
T ss_pred ecCCCcEEEE--ecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEecc----------ccccEEEEEec-
Confidence 9999998876 889999999999877 5688999999999999999999988875 34489999998
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
+.++++|+.|++|++|++.+++. + ....+|...|.++.+.+. ..+++|+ ++.|++||+.+.
T Consensus 341 --~~~lvsgs~d~~v~VW~~~~~~c--------------l-~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPRTGKC--------------L-KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred --CCEEEEEecCceEEEEEhhhcee--------------e-eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence 46999999999999999998763 3 334458999999988876 7777777 678999999873
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
..++.++.+|... +..+.+ .+++|++++.|++|++||.
T Consensus 403 -------------------------------------~~c~~tl~~h~~~--v~~l~~---~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 403 -------------------------------------RKCIHTLQGHTSL--VSSLLL---RDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred -------------------------------------hhhhhhhcCCccc--cccccc---ccceeEeccccccEEEeec
Confidence 1677888999886 555544 6789999999999999999
Q ss_pred cCcceeEEeec-CcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 373 KGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 373 ~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
.++++++++.+ |.+.|.++++. ...+++++.+|++++|++.++.+.
T Consensus 441 ~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 441 EEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 99999999998 67889999887 568999999999999999988763
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=221.43 Aligned_cols=241 Identities=21% Similarity=0.308 Sum_probs=203.9
Q ss_pred CCCCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC-CCCEEEEe
Q 009266 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISG 79 (538)
Q Consensus 1 ~~~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~t~ 79 (538)
+|.|+.+.....+++++.||+++|||..-.. .+++.++.|+..|.++.|++ .++.++++
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~lts 123 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLTMPS--------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTS 123 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccCCCC--------------------cchhHHHhhhhheEEeccccccceeEEee
Confidence 3678888889999999999999999965221 35788999999999999998 56788899
Q ss_pred cCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 80 ~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
|.|++||||+...++.+.++ .+|...|+..+|+|. .++++++++.|+++++||++....... +..|...|.++.|+
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~--i~ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMS--IEAHNSEILCCDWS 199 (311)
T ss_pred ccCCceEeecCCCCcceEee-cCCccEEEEEecCCC-CCCeEEEccCCceEEEEEecCCCceeE--EEeccceeEeeccc
Confidence 99999999999989988888 899999999999994 788999999999999999987755443 77899999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCCe-eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccc
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 238 (538)
.-.+++|+||+.|+.|++||++..+. +..+.. |...|+.++|+|....+|++++.|=+++||+.....
T Consensus 200 ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g----------h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d- 268 (311)
T KOG0277|consen 200 KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG----------HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD- 268 (311)
T ss_pred ccCCcEEEecCCCceEEEEehhhccccceeecC----------CceEEEEEecCcchhhHhhhccccceEEecccccch-
Confidence 98889999999999999999997652 233322 455899999999878899999999999999988543
Q ss_pred cCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEc-CCeEEEeec
Q 009266 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQ 289 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~-~~~i~~~d~ 289 (538)
.......+|...+..+.|++ ...++|+++ +..++||+.
T Consensus 269 -------------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 -------------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -------------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 22344557888999999998 456888888 669999984
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=224.48 Aligned_cols=306 Identities=16% Similarity=0.190 Sum_probs=232.9
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
.|-|+|+|.++|||+.|..|+|.+++ +.+.+. .+.-....+...+-+++++|-.|...|+++.|+|...+|++|+.|
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildve--rmlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVE--RMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehh--hhhhhc-chhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 46789999999999999999999998 222221 111111222334457889999999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeec-cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee-eeccccCCCcEEEEEcC
Q 009266 83 RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~ 160 (538)
++|++||+......+.+. .....+|.+|.|+| .|.+|+.|..-.++++||+.+-++... ..-.+|+..|+++.+++
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence 999999987654332221 13456899999999 999999999999999999998876433 23457999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
.+ ++.++++.||.|++||--+++++..+.... ....|.+..|..+ +++|++.+.|..|++|.+.+++.+.
T Consensus 272 t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH--------~gsevcSa~Ftkn-~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 272 TG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAH--------GGSEVCSAVFTKN-GKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred Cc-cEEEEeccCCcEEeeccccHHHHHHHHhhc--------CCceeeeEEEccC-CeEEeecCCcceeeeeeecCCceEE
Confidence 99 789999999999999999999988876332 3457999999996 8999999999999999999987543
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcc
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
.+.-... .+....-+...|+....+++.-. .+.+.-||.++...
T Consensus 342 ~YtGAg~----------tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr------------------------ 387 (430)
T KOG0640|consen 342 EYTGAGT----------TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR------------------------ 387 (430)
T ss_pred EEecCCc----------ccchhhhhhhhhcCccceEEccccccCceeeccccchhh------------------------
Confidence 3221100 00111223455777777777665 34788999887422
Q ss_pred ccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
....-.+|.+. +..+.. ||.+.-+++|+.|.++|+|-..
T Consensus 388 -------------~~l~slgHn~a--~R~i~H-SP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 388 -------------VALLSLGHNGA--VRWIVH-SPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -------------hhhcccCCCCC--ceEEEe-CCCCCceeeecccceeeeeeec
Confidence 22233467776 777776 9999999999999999999753
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-30 Score=214.67 Aligned_cols=280 Identities=19% Similarity=0.309 Sum_probs=219.0
Q ss_pred eEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 009266 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~ 91 (538)
.|++|++...|.-+++.-... .........+.+...+..|.++|+++|.+ +.++|+||.|-+|+|||+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~---------~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~ 71 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPK---------GCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMR 71 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcc---------ccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEecc
Confidence 578888888777777652110 01112235567788899999999999997 8999999999999999999
Q ss_pred CCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC
Q 009266 92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (538)
Q Consensus 92 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 171 (538)
+...+..+ ..|.+.|+++.|.+......|++|+.||.|.+|+...-..+ ..+.+|.+.|+.++++|.+ ++.++.+.
T Consensus 72 k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~--~slK~H~~~Vt~lsiHPS~-KLALsVg~ 147 (362)
T KOG0294|consen 72 KRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL--KSLKAHKGQVTDLSIHPSG-KLALSVGG 147 (362)
T ss_pred chhhhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe--eeecccccccceeEecCCC-ceEEEEcC
Confidence 88887777 57999999999998222239999999999999998766544 4599999999999999999 78999999
Q ss_pred CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCccc
Q 009266 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (538)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 251 (538)
|+.+++|++-+++......... ....+.|+|. |.+|+.+..+ .|-+|.+.+..+.....
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~-----------~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-------- 206 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKN-----------KATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIE-------- 206 (362)
T ss_pred CceeeeehhhcCccceeeccCC-----------cceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhh--------
Confidence 9999999999998776665432 2355999998 6677776654 58899988765432211
Q ss_pred CCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCccc
Q 009266 252 CPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (538)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
....+.++.|...+.+++.+.+..|.+||... ..
T Consensus 207 --------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds--------------------------------------~~ 240 (362)
T KOG0294|consen 207 --------NPKRILCATFLDGSELLVGGDNEWISLKDTDS--------------------------------------DT 240 (362)
T ss_pred --------ccccceeeeecCCceEEEecCCceEEEeccCC--------------------------------------Cc
Confidence 12457888887766666666677999999876 44
Q ss_pred CCceeeccccceeeeEEEE-ecCCCcEEEEeccCCeEEEeeccCc
Q 009266 332 APQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 332 ~~~~~~~~~~~~~i~~v~~-~s~~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
++..+.+|.+. |..+.+ -.|.+.||+++|.||.|+||++...
T Consensus 241 ~~~~~~AH~~R--VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 PLTEFLAHENR--VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cceeeecchhh--eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 66788899987 777773 3677899999999999999999765
No 79
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-30 Score=215.09 Aligned_cols=275 Identities=18% Similarity=0.226 Sum_probs=218.3
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
....|+.|.|+|.+..|+.+++||++++|++........+ .|..++.+++|. +...+++|+.||.|+++|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFA---DESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeecc---CCceEEEeccCceEEEEEecCCc
Confidence 4678999999999999999999999999999887665555 688999999998 46789999999999999999876
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 219 (538)
... +..|..+|+||.+++.. ..+++|+.|++|++||.+.......+. ....|.++... ++.|
T Consensus 87 ~~~---igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d-----------~~kkVy~~~v~---g~~L 148 (323)
T KOG1036|consen 87 EDQ---IGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFD-----------QGKKVYCMDVS---GNRL 148 (323)
T ss_pred cee---eccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccc-----------cCceEEEEecc---CCEE
Confidence 644 67799999999999866 679999999999999999855554443 22268888776 5789
Q ss_pred EEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCC
Q 009266 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 298 (538)
++|+.+..|.+||+|+....- +.....-+..++|+++-|++.-.++++ +|+|.+=.+......
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~-------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~--- 212 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPF-------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA--- 212 (323)
T ss_pred EEeecCceEEEEEcccccchh-------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH---
Confidence 999999999999999876311 112223356899999999877555555 887765444432100
Q ss_pred CCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccc-------ceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
......|+.|.. ..+|++++| +|--..||||+.||.|.+||
T Consensus 213 -------------------------------~skkyaFkCHr~~~~~~~~~yPVNai~F-hp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 213 -------------------------------QSKKYAFKCHRLSEKDTEIIYPVNAIAF-HPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred -------------------------------hhhceeEEeeecccCCceEEEEeceeEe-ccccceEEecCCCceEEEcc
Confidence 112233444432 234899999 99999999999999999999
Q ss_pred ccCcceeEEeecCcceeeEEeecCCCCeEEEeec
Q 009266 372 KKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (538)
Q Consensus 372 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (538)
+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999887788999999999999999974
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=6.2e-31 Score=226.98 Aligned_cols=275 Identities=20% Similarity=0.278 Sum_probs=227.4
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
....++||+.|..+.++|..+++++ ..++||...|+.+.|+|+...+++++.|..|+||
T Consensus 230 s~~~ilTGG~d~~av~~d~~s~q~l---------------------~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 230 SSSKILTGGEDKTAVLFDKPSNQIL---------------------ATLKGHTKKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred CCCcceecCCCCceEEEecchhhhh---------------------hhccCcceEEEEEEeccchhheeecCCcceEEee
Confidence 3578999999999999999988875 6799999999999999999999999999999999
Q ss_pred ECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEE
Q 009266 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (538)
.......... ...|..+|+.+..+| .|.||++++.+++..+.+++++.++....-....-.+++++|+|+| .+|.+
T Consensus 289 s~~~~s~~~~-~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgt 364 (506)
T KOG0289|consen 289 SVPLSSEPTS-SRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGT 364 (506)
T ss_pred ccccccCccc-cccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEec
Confidence 9887665444 489999999999999 9999999999999999999999887653332233458999999999 89999
Q ss_pred EcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCC
Q 009266 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (538)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (538)
|..|+.|+|||+.++..+..|.. |.++|..|+|+.+ |.+|++++.|+.|++||+|..+..++
T Consensus 365 gt~d~~vkiwdlks~~~~a~Fpg----------ht~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt------- 426 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKFPG----------HTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKT------- 426 (506)
T ss_pred cCCCceEEEEEcCCccccccCCC----------CCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccce-------
Confidence 99999999999999887777664 4558999999996 89999999999999999998763222
Q ss_pred cccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCC
Q 009266 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
+.......+.++.|.+.|++|+.++.. +|+++.-.+.
T Consensus 427 -------~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k----------------------------------- 464 (506)
T KOG0289|consen 427 -------IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK----------------------------------- 464 (506)
T ss_pred -------eeccccccceeEEEcCCCCeEEeecceeEEEEEecccc-----------------------------------
Confidence 222234479999999999999999655 6666664431
Q ss_pred CcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
.......+.-|.+. .+.+.| ....+++++++.+..++++.+
T Consensus 465 -~W~~~~~~~~~sg~--st~v~F-g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 465 -SWTEIKELADHSGL--STGVRF-GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -cceeeehhhhcccc--cceeee-cccceEEeeccchhheEEeec
Confidence 13344555566644 677887 888899999999999888764
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-31 Score=251.45 Aligned_cols=254 Identities=15% Similarity=0.180 Sum_probs=202.7
Q ss_pred cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc--------------------------------Cce--------
Q 009266 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE--------------------------------RGG-------- 140 (538)
Q Consensus 101 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~--------------------------------~~~-------- 140 (538)
.+|.+.|+++.|++ +|+|||+|+.||.|+||.+.. ...
T Consensus 264 ~ah~gaIw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccCCcEEEEEeCC--CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 38999999999999 999999999999999999865 000
Q ss_pred ------------------eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcce
Q 009266 141 ------------------VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (538)
Q Consensus 141 ------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (538)
.+...+.+|...|..|.|+.++ +|++++.|.+||+|++....++..|. |
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-----------H 408 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-----------H 408 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-----------c
Confidence 0112356799999999999975 78999999999999999999999998 7
Q ss_pred eeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C
Q 009266 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D 281 (538)
Q Consensus 203 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 281 (538)
...|+|++|+|-+.++|++|+-||.||||++...++... ..-..-|++++|.|+|++.++|+ .
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W----------------~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW----------------NDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee----------------hhhhhhheeEEeccCCceEEEEEec
Confidence 778999999999899999999999999999998764322 11246799999999999999998 7
Q ss_pred CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe
Q 009266 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g 361 (538)
|.+++|++...+...... ......+..+++ .|+.+.|+..+...|++.
T Consensus 473 G~C~fY~t~~lk~~~~~~----------------------------I~~~~~Kk~~~~----rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFH----------------------------IRLHNKKKKQGK----RITGLQFFPGDPDEVLVT 520 (712)
T ss_pred cEEEEEEccCCeEEEeee----------------------------EeeccCccccCc----eeeeeEecCCCCCeEEEe
Confidence 899999987643222211 000011111112 399999944444568888
Q ss_pred ccCCeEEEeeccCcceeEEeecCcc--eeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 362 SDCGRIFIWKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 362 s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
+.|..|||||....+++..|+++.. .-....|+.+|++|++++.|..|+||++...
T Consensus 521 SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 8899999999999999999987653 4466789999999999999999999998543
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=4e-31 Score=254.01 Aligned_cols=295 Identities=15% Similarity=0.217 Sum_probs=234.3
Q ss_pred CcCcEEEEEEcCCCCEEEEec--CCCeEEEEECCC------------CceeeeeccCCCCCeEEEEEeecCCCceEEEEe
Q 009266 60 HRGCVNTVSFNTDGDILISGS--DDRRVILWDWKT------------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~--~d~~i~iw~~~~------------~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
+...|.++..+|+|..+|||+ .|+.++||+... .+.+.+. ..|.+.|+|+.|+| +|++||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~--dG~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSP--DGSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECC--CCCeEeecc
Confidence 456799999999999999999 899999998642 1223333 68999999999999 999999999
Q ss_pred CCCcEEEeeccc----------C------ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeee
Q 009266 126 ADGQVRHAQILE----------R------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELF 189 (538)
Q Consensus 126 ~dg~v~vwd~~~----------~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 189 (538)
.|+.|.||.... + .......+.+|...|..++|+|++ .+|++++.|++|.||+.++.+.+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeee
Confidence 999999999873 0 011334588999999999999998 79999999999999999999888888
Q ss_pred eecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEE
Q 009266 190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (538)
..|. ..|..+.|.|- |++||+-+.|++|++|.+..-.....+. .|. ........++.+.|
T Consensus 168 ~~H~----------s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It--~pf-------~~~~~~T~f~RlSW 227 (942)
T KOG0973|consen 168 RGHQ----------SLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSIT--KPF-------EESPLTTFFLRLSW 227 (942)
T ss_pred eccc----------ccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeec--cch-------hhCCCcceeeeccc
Confidence 7654 37999999998 8999999999999999977643322211 010 00112456889999
Q ss_pred cCCCCEEEEEc--CC---eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccccee
Q 009266 270 SDQSELLVSYN--DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT 344 (538)
Q Consensus 270 s~~~~~l~~~~--~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (538)
||+|++|++.. .+ .+.|.+..+ ...-..|-||..+
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~t--------------------------------------Wk~~~~LvGH~~p-- 267 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGT--------------------------------------WKVDKDLVGHSAP-- 267 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCC--------------------------------------ceeeeeeecCCCc--
Confidence 99999999875 22 577777644 4445778899987
Q ss_pred eeEEEEecCC-----Cc------------EEEEeccCCeEEEeeccCcceeEEee-cCcceeeEEeecCCCCeEEEeecC
Q 009266 345 VKGVNFFGPK-----CE------------YVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIE 406 (538)
Q Consensus 345 i~~v~~~s~~-----~~------------~l~~gs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d 406 (538)
+..+.| +|. .+ .+|+|+.|++|-||.....+++.... -....|..++|+|+|..|+.||.|
T Consensus 268 ~evvrF-nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D 346 (942)
T KOG0973|consen 268 VEVVRF-NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD 346 (942)
T ss_pred eEEEEe-ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecC
Confidence 788888 651 11 67899999999999998877775543 234689999999999999999999
Q ss_pred CceEEecCCCCcc
Q 009266 407 SDIKILTPNAADR 419 (538)
Q Consensus 407 g~v~vw~~~~~~~ 419 (538)
|+|.+..++..+.
T Consensus 347 GtV~~i~Fee~El 359 (942)
T KOG0973|consen 347 GTVALIHFEEKEL 359 (942)
T ss_pred CeEEEEEcchHHh
Confidence 9999999987654
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-30 Score=237.68 Aligned_cols=271 Identities=19% Similarity=0.263 Sum_probs=228.2
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
.+.|++|. ...|++|+..++... ....-+...|+++.|+++|.+||+|..+|.|.|||
T Consensus 188 ~n~laVal-g~~vylW~~~s~~v~---------------------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD 245 (484)
T KOG0305|consen 188 ANVLAVAL-GQSVYLWSASSGSVT---------------------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWD 245 (484)
T ss_pred CCeEEEEe-cceEEEEecCCCceE---------------------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEe
Confidence 34566665 458999999988853 22233488999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (538)
..+.+.+..+...|...|-+++|. +..+.+|+.++.|..++++....... .+.+|...|..+.|++++ .+|++|
T Consensus 246 ~~~~k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~-~~lASG 319 (484)
T KOG0305|consen 246 VKEQKKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDG-NQLASG 319 (484)
T ss_pred hhhccccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCC-CeeccC
Confidence 999888888844499999999996 47899999999999999998776655 588999999999999999 799999
Q ss_pred cCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCccccCCCCCCCC
Q 009266 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDFGQP 247 (538)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~ 247 (538)
+.|+.+.|||.....++..+.. |.+.|.+++|+|....+||+|+ .|+.|++|+..+++.....
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~----------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----- 384 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTE----------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----- 384 (484)
T ss_pred CCccceEeccCCCccccEEEec----------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----
Confidence 9999999999977777666654 5558999999998788999876 6899999999988743321
Q ss_pred CcccCCCCccCCCccceEEEEEcCCCCEEEEEc---CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
....+|.+|.|++..+-|+++. .+.|.||...+
T Consensus 385 -----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--------------------------------- 420 (484)
T KOG0305|consen 385 -----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--------------------------------- 420 (484)
T ss_pred -----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc---------------------------------
Confidence 1256899999999987666654 45899999877
Q ss_pred CCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc
Q 009266 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
...+..+.+|... |..+++ +|+|..|++|+.|.++++|++-..
T Consensus 421 -----~~~~~~l~gH~~R--Vl~la~-SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 -----MKLVAELLGHTSR--VLYLAL-SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -----cceeeeecCCcce--eEEEEE-CCCCCEEEEecccCcEEeccccCC
Confidence 5567889999987 999999 999999999999999999998664
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-31 Score=238.99 Aligned_cols=276 Identities=19% Similarity=0.271 Sum_probs=226.0
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 143 (538)
.+-+.|+. .+.||.|.. ..|.+|+..++...... ..+...|+++.|++ +|.+|++|..+|.|.|||..+.+.+..
T Consensus 180 ~nlldWss-~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~~ 254 (484)
T KOG0305|consen 180 LNLLDWSS-ANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTRT 254 (484)
T ss_pred hhHhhccc-CCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECC--CCCEEEEeecCCeEEEEehhhcccccc
Confidence 34467773 457777764 47999999988854443 34488999999999 999999999999999999988777765
Q ss_pred eeccc-cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeee-eeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 144 KLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 144 ~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
+.. |...|-+++|.. ..+.+|+.++.|..+|++..+.... +.. |...|..+.|+++ ++++|+
T Consensus 255 --~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~----------H~qeVCgLkws~d-~~~lAS 318 (484)
T KOG0305|consen 255 --LRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQG----------HRQEVCGLKWSPD-GNQLAS 318 (484)
T ss_pred --ccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhc----------ccceeeeeEECCC-CCeecc
Confidence 666 999999999994 5799999999999999998876555 222 4558999999998 799999
Q ss_pred EeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEc---CCeEEEeeccCCCCCCC
Q 009266 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN---DEFIYLFTQDMGLGPNP 297 (538)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~---~~~i~~~d~~~~~~~~~ 297 (538)
|+.|+.+.|||..... +...+..|...|..++|+| ...+||+|+ +.+|++|++.++...
T Consensus 319 GgnDN~~~Iwd~~~~~---------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-- 381 (484)
T KOG0305|consen 319 GGNDNVVFIWDGLSPE---------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-- 381 (484)
T ss_pred CCCccceEeccCCCcc---------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe--
Confidence 9999999999995432 3455667899999999999 456788876 458999999875322
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE--eccCCeEEEeeccCc
Q 009266 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGG 375 (538)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~--gs~dg~i~iwd~~~~ 375 (538)
..+... ..|.+|.| ++..+-|++ |..++.|.||+..+.
T Consensus 382 ------------------------------------~~vdtg---sQVcsL~W-sk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 382 ------------------------------------DSVDTG---SQVCSLIW-SKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred ------------------------------------cccccC---CceeeEEE-cCCCCEEEEecCCCCCcEEEEecccc
Confidence 222221 23999999 998865554 556789999999999
Q ss_pred ceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
+++..+.+|...|..++++|+|..+++|+.|.++++|++-..
T Consensus 422 ~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999999999999999999998764
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.5e-30 Score=247.29 Aligned_cols=274 Identities=23% Similarity=0.378 Sum_probs=229.6
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
..++++++.+++|++|+..++..+ ...+.||.+.|++++|..-+.+|++|+.|.++++|+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i--------------------~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLI--------------------LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cCeEEecCCCceeEEeecccceEE--------------------EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 668999999999999999988876 345999999999999988788999999999999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (538)
+.+|++...+ .+|...|.++...+ .++++|+.|.+|++|++.++..+.. +.+|..+|+++.++ + .++++|
T Consensus 278 ~~sg~C~~~l-~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l--~~~h~~~V~~v~~~--~-~~lvsg 347 (537)
T KOG0274|consen 278 CSTGECTHSL-QGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNL--LRGHTGPVNCVQLD--E-PLLVSG 347 (537)
T ss_pred cCCCcEEEEe-cCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEE--eccccccEEEEEec--C-CEEEEE
Confidence 9999999988 79999999998854 7888999999999999999888876 77799999999998 4 589999
Q ss_pred cCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-cccCCCCCCCCC
Q 009266 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFGQPA 248 (538)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 248 (538)
+.|++|++|++.+++++..+..| ...|.++.+.+. .++++|+.|++|++||+++. +.
T Consensus 348 s~d~~v~VW~~~~~~cl~sl~gH----------~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c---------- 405 (537)
T KOG0274|consen 348 SYDGTVKVWDPRTGKCLKSLSGH----------TGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC---------- 405 (537)
T ss_pred ecCceEEEEEhhhceeeeeecCC----------cceEEEEEecCc--ceEEeeeeccceEeecCCchhhh----------
Confidence 99999999999999999988864 448999988863 79999999999999999987 42
Q ss_pred cccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCC
Q 009266 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
.....+|..-+..+.+ .+++|++++ ++.|++||...
T Consensus 406 -----~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~------------------------------------ 442 (537)
T KOG0274|consen 406 -----IHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE------------------------------------ 442 (537)
T ss_pred -----hhhhcCCccccccccc--ccceeEeccccccEEEeeccc------------------------------------
Confidence 2333445555644443 567888887 77999999987
Q ss_pred CcccCCceeec-cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCc
Q 009266 328 DVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (538)
Q Consensus 328 ~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~ 385 (538)
..+++.+.+ |... |..+++ . ...+++++.+|++++||+.++++++.+-.+.
T Consensus 443 --~~~~~~~~~~~~~~--v~~l~~-~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 443 --GECLRTLEGRHVGG--VSALAL-G--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred --CceeeeeccCCccc--EEEeec-C--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 455666666 4443 677665 3 4688899999999999999999988774333
No 86
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-29 Score=230.90 Aligned_cols=398 Identities=15% Similarity=0.172 Sum_probs=277.3
Q ss_pred CCCCCCCC--ceEEeeccCCceEEeeeccCceec----cccchhhcccc------cceEEeeeeeEEcCCcCcEEEEEEc
Q 009266 3 DASNNNNN--KRARTSVDKALVDVWLRELGQLST----RNFALRRRASE------DLVLRLGIYAKLDKHRGCVNTVSFN 70 (538)
Q Consensus 3 ~a~~~~~~--~~l~t~~~d~~v~iwd~~~g~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~h~~~v~~~~~s 70 (538)
.+|..+.+ -+||+++.|.+||||.+.-+.... ..+........ ....++.....+.||.+.|.++.|+
T Consensus 197 l~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~ 276 (764)
T KOG1063|consen 197 LAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH 276 (764)
T ss_pred hhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc
Confidence 34555444 569999999999999987554222 11111111100 1111222334567999999999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCc--eee--ee--ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc-cCceeee
Q 009266 71 TDGDILISGSDDRRVILWDWKTER--VKL--SF--HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL-ERGGVET 143 (538)
Q Consensus 71 ~~g~~l~t~~~d~~i~iw~~~~~~--~~~--~~--~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~-~~~~~~~ 143 (538)
|.+..|+++|.|.++.||...+.. -+. ++ ..+.....+...|+| +++.+++-+..|..++|... .....+.
T Consensus 277 p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~Gg~hlWkt~d~~~w~~~ 354 (764)
T KOG1063|consen 277 PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRTGGFHLWKTKDKTFWTQE 354 (764)
T ss_pred cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--CCCEEEEecccCcEEEEeccCccceeec
Confidence 999999999999999999876542 111 11 134455788999999 99999999999999999933 2334555
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
..+.+|...|+.++|.|.| .+|++.+.|.+-|+|-.- ++... .|.....+- |...++|++|-+. ...|++|.
T Consensus 355 ~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~w-g~q~~---wHEiaRPQi--HGyDl~c~~~vn~-~~~FVSgA 426 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARW-GRQQE---WHEIARPQI--HGYDLTCLSFVNE-DLQFVSGA 426 (764)
T ss_pred cccccccccceeeeecCCC-CEEEEeccccceeeeccc-ccccc---eeeeccccc--ccccceeeehccC-Cceeeecc
Confidence 5688999999999999999 689999999999999655 22221 222111112 5558999999985 57899999
Q ss_pred CCCeEEEEEcCCccc------cC-----C-----------C------CC--------------C-----CCCccc-----
Q 009266 224 SDEYTRLYDIRKYKW------DG-----S-----------T------DF--------------G-----QPADYF----- 251 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~------~~-----~-----------~------~~--------------~-----~~~~~~----- 251 (538)
....+|+|+....-. .. . . .+ . .|....
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 999999998763200 00 0 0 00 0 000000
Q ss_pred ---------CCCCccCCCccceEEEEEcCCCCEEEEEcCC------eEEEeeccCCCCCCCCCCCCccccccccccCCCC
Q 009266 252 ---------CPPNLIGDEQVGITGLAFSDQSELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (538)
Q Consensus 252 ---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
.-.+..-+|...|.+++.+|+|+++|++... .|++|+..+
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~------------------------- 561 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN------------------------- 561 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-------------------------
Confidence 0011223477889999999999999998732 399999876
Q ss_pred ccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcce----eEEeecCcceeeEEe
Q 009266 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL----IRVIEADRHVVNCIE 392 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~ 392 (538)
....+.+.+|.-. |+.++| ||+|+||++.+.|.++.+|....... ...++.|+..|..+.
T Consensus 562 -------------W~~~~~L~~HsLT--VT~l~F-Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs 625 (764)
T KOG1063|consen 562 -------------WLQVQELEGHSLT--VTRLAF-SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS 625 (764)
T ss_pred -------------hhhhheecccceE--EEEEEE-CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence 3445678888875 999999 99999999999999999999754322 234778999999999
Q ss_pred ecCCCCeEEEeecCCceEEecCCCCccc-----ccCccceeeeecc-------cCc-eeeeccCCCCCceee
Q 009266 393 PHPHSTVLASSGIESDIKILTPNAADRA-----TLPTNIEQVLIPD-------HIR-WFALGDDDDGDYYFY 451 (538)
Q Consensus 393 ~s~~~~~l~s~~~dg~v~vw~~~~~~~~-----~~~~~~~~~~~~~-------~~~-~l~s~~~d~~~~~~~ 451 (538)
|+|++.++||+|.|.+|+||......-. ....+...++.++ ..+ .++.|-..|..+.+.
T Consensus 626 W~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 626 WSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred cCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 9999999999999999999998776211 2344555555443 222 555666666666554
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.3e-32 Score=224.22 Aligned_cols=281 Identities=15% Similarity=0.183 Sum_probs=223.4
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-------ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
.+..+-|..|||+|+||++|+.||.|.+|+..+|+....+ +--+..+|.|+.|+. +..+|++|+.||.|+|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEMLASGSQDGKIKV 289 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHhhccCcCCcEEE
Confidence 4567889999999999999999999999999999864333 134678999999999 9999999999999999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
|.+.++.++... -+.|+..|+|+.|+.++ ..+++++.|.++||.-+++|++++.++.| .+.|+.+.|.
T Consensus 290 Wri~tG~ClRrF-drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGH----------sSyvn~a~ft 357 (508)
T KOG0275|consen 290 WRIETGQCLRRF-DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGH----------SSYVNEATFT 357 (508)
T ss_pred EEEecchHHHHh-hhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCc----------cccccceEEc
Confidence 999999998762 34899999999999999 56899999999999999999999988864 4479999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCC
Q 009266 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (538)
++ |..+++++.||+|++|+.++.....++ . |-
T Consensus 358 ~d-G~~iisaSsDgtvkvW~~KtteC~~Tf--------------k-------------~~-------------------- 389 (508)
T KOG0275|consen 358 DD-GHHIISASSDGTVKVWHGKTTECLSTF--------------K-------------PL-------------------- 389 (508)
T ss_pred CC-CCeEEEecCCccEEEecCcchhhhhhc--------------c-------------CC--------------------
Confidence 98 799999999999999999887632221 0 10
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
....+|.++..+..+...++++...++|+|.++
T Consensus 390 -----------------------------------------------~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 390 -----------------------------------------------GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred -----------------------------------------------CCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence 011124444443445567778888889999987
Q ss_pred cCcceeEEeecC---cceeeEEeecCCCCeEEEeecCCceEEecCCCCcc-cccCccceeeeecc--c-CceeeeccCCC
Q 009266 373 KGGELIRVIEAD---RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVLIPD--H-IRWFALGDDDD 445 (538)
Q Consensus 373 ~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~--~-~~~l~s~~~d~ 445 (538)
.|+.++.+... .+...+++.||.|.++.+.+.|+.++.|.+.++.+ ..+.-|...+.-+. | .+.|++=+.|+
T Consensus 423 -qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 423 -QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred -cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccc
Confidence 57888777532 24566778999999999999999999999998877 45556777676665 3 33788877777
Q ss_pred CCcee
Q 009266 446 GDYYF 450 (538)
Q Consensus 446 ~~~~~ 450 (538)
....|
T Consensus 502 llKLW 506 (508)
T KOG0275|consen 502 LLKLW 506 (508)
T ss_pred hhhhc
Confidence 54443
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.9e-31 Score=228.94 Aligned_cols=304 Identities=19% Similarity=0.178 Sum_probs=228.1
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccch-hhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFAL-RRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~ 81 (538)
.++.+|+.++.++++.+++|.=|++.+|+........ ....+ ....+++.+ ++|...|.+++.||+|+|||||+.
T Consensus 147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~--~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS--HGNPLKESR--KGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh--ccCCCCccc--ccccceeEEEEEcCCCcEEEecCC
Confidence 3567899999999999999999999999854221111 00000 001112222 489999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCC
Q 009266 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
|..|.||+..+.+.+..+ .+|.+.|.+++|-. ....|++++.|+.|++|++.....+.+ +.+|...|..|....-
T Consensus 223 d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vet--lyGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVET--LYGHQDGVLGIDALSR 297 (479)
T ss_pred CceEEEecCcccchhhcc-cccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHH--HhCCccceeeechhcc
Confidence 999999999999998887 89999999999998 788999999999999999988777766 8999999999988877
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
. +.+-+|+.|+++++|++..... ..+.. +...+-|++|-.+ ..|++|+.+|.|.+|++.+.+.+-.
T Consensus 298 e-R~vtVGgrDrT~rlwKi~eesq-lifrg----------~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 298 E-RCVTVGGRDRTVRLWKIPEESQ-LIFRG----------GEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred c-ceEEeccccceeEEEeccccce-eeeeC----------CCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeE
Confidence 7 5666677999999999944332 23332 3447899999875 7999999999999999998876554
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
....+++.... -...++.+|++++..|...++|+++ +|.|++|-+..+..
T Consensus 364 ~~~AHgv~~~~---~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-------------------------- 414 (479)
T KOG0299|consen 364 SRLAHGVIPEL---DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-------------------------- 414 (479)
T ss_pred eeccccccCCc---cccccccceeeeEecccCceEEecCCCCceEEEEecCCcc--------------------------
Confidence 44433322110 1112236899999999999999999 77999999987632
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe-ccCCeEEEe
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIW 370 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g-s~dg~i~iw 370 (538)
.+..+..-.-...|++++| +++|++|++| +....+--|
T Consensus 415 -----------~i~~l~~ls~~GfVNsl~f-~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 415 -----------AINLLYSLSLVGFVNSLAF-SNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred -----------ccceeeecccccEEEEEEE-ccCCCEEEEeccccccccee
Confidence 2222332223335999998 8999966665 333333333
No 89
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.4e-29 Score=240.72 Aligned_cols=249 Identities=18% Similarity=0.191 Sum_probs=185.9
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEe-eeeeEEcCCcCcEEEEEEcC-CCCEEEEecCCC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDR 83 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~-~g~~l~t~~~d~ 83 (538)
+.+++..+++++.+..+..|+...|..+.. ... .-++ .....+.+|.+.|++++|+| ++++||+|+.|+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~----~~~-----~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLK----HTD-----YGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEee----ccc-----cccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 446667788888888888998764433210 000 0000 11234789999999999999 889999999999
Q ss_pred eEEEEECCCCc-------eeeeeccCCCCCeEEEEEeecCCC-ceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEE
Q 009266 84 RVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (538)
Q Consensus 84 ~i~iw~~~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~ 155 (538)
+|+||++.++. ++..+ .+|...|.+|+|+| .+ .+|++++.|++|+|||+.++..+.. +..|...|.+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P--~~~~iLaSgs~DgtVrIWDl~tg~~~~~--l~~h~~~V~s 173 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHP--SAMNVLASAGADMVVNVWDVERGKAVEV--IKCHSDQITS 173 (493)
T ss_pred EEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCc--CCCCEEEEEeCCCEEEEEECCCCeEEEE--EcCCCCceEE
Confidence 99999997653 33444 78999999999999 64 6899999999999999998876544 7889999999
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe----CCCeEEEE
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG----SDEYTRLY 231 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~v~iw 231 (538)
++|+|++ .+|++++.|++|+|||+++++.+..+..+.. ..+..+.|.+.+ ..|++++ .++.|++|
T Consensus 174 la~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~---------~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklW 242 (493)
T PTZ00421 174 LEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS---------AKSQRCLWAKRK-DLIITLGCSKSQQRQIMLW 242 (493)
T ss_pred EEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCC---------CcceEEEEcCCC-CeEEEEecCCCCCCeEEEE
Confidence 9999999 7899999999999999999988777654421 123467788874 4555443 47999999
Q ss_pred EcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCC
Q 009266 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMG 292 (538)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~ 292 (538)
|+++... +. ..........+....|++++.+|++++ ++.|++|++..+
T Consensus 243 Dlr~~~~--------p~-----~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 243 DTRKMAS--------PY-----STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eCCCCCC--------ce-----eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 9987541 10 111112234566678999999888765 669999999874
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-31 Score=229.44 Aligned_cols=274 Identities=19% Similarity=0.246 Sum_probs=217.7
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
||.|..+--+|+.+ .-.+.||+..+...+ +++......|.++.|-.||++||+|...|
T Consensus 33 ~fsp~~P~d~aVt~-S~rvqly~~~~~~~~---------------------k~~srFk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 33 CFSPKHPYDFAVTS-SVRVQLYSSVTRSVR---------------------KTFSRFKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred ecCCCCCCceEEec-ccEEEEEecchhhhh---------------------hhHHhhccceeEEEeecCCeEEEccCCcC
Confidence 55565554555555 347999998865543 33445678899999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
.|+|||..+...++.+ .+|..+|..+.|+| .++..|++|+.|+.+++|++.+... ...+.+|+..|+|.+|+|..+
T Consensus 91 ~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~ 166 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQL-YAHQAPVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPAND 166 (487)
T ss_pred cEEEeccccHHHHHHH-hhccCceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCC
Confidence 9999996664444444 89999999999999 3677888899999999999988764 345899999999999999988
Q ss_pred cEEEEEcCCCcEEEEecCCC-CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
++++||+.||.|++||+++. ..+..+. |..+|..+.+-|. |.+|++++. ..|++||+.++..
T Consensus 167 hivvtGsYDg~vrl~DtR~~~~~v~eln-----------hg~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~q---- 229 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLTSRVVELN-----------HGCPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQ---- 229 (487)
T ss_pred eEEEecCCCceEEEEEeccCCceeEEec-----------CCCceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCce----
Confidence 99999999999999999987 4444554 5568999999996 678888764 5799999997642
Q ss_pred CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
.......|...|+|+++..+++.|++++ ++.+++|++.+
T Consensus 230 ----------ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~------------------------------ 269 (487)
T KOG0310|consen 230 ----------LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN------------------------------ 269 (487)
T ss_pred ----------ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc------------------------------
Confidence 2233444788999999999999999988 88999999654
Q ss_pred CCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
. +...+-.-+.+|.+++. +|+++.++.|..+|.+.+-..
T Consensus 270 --------~---Kvv~s~~~~~pvLsiav-s~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 270 --------Y---KVVHSWKYPGPVLSIAV-SPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred --------e---EEEEeeecccceeeEEe-cCCCceEEEecccceeeeehh
Confidence 2 22222222334999998 999999999999998877644
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=2e-30 Score=225.70 Aligned_cols=300 Identities=18% Similarity=0.219 Sum_probs=233.1
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee----ee------------ec-cCCCCCeEEEEEeecC
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK----LS------------FH-SGHNDNVFQAKIMPFT 116 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~----~~------------~~-~~~~~~v~~l~~~~~~ 116 (538)
.+.+..|.-+|+||+++|+.+++++++.+++|.-|++.+|+.. .+ .. ..|...|.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-- 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-- 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC--
Confidence 4667889999999999999999999999999999999887733 11 11 27888999999999
Q ss_pred CCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCC
Q 009266 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (538)
+|++||+|+.+..|.||+..+...+.. +.+|.+.|.+++|-... ..|++++.|+.|++|++.....+.++..|+.
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-- 287 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQD-- 287 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCcc--
Confidence 999999999999999999999888766 89999999999998765 6789999999999999999888887776543
Q ss_pred CCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE
Q 009266 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (538)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 276 (538)
.|..|..... ++.+.+|+.|+++++|.+.... +.++.++...+-|++|-.+..++
T Consensus 288 --------~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~ees----------------qlifrg~~~sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 288 --------GVLGIDALSR-ERCVTVGGRDRTVRLWKIPEES----------------QLIFRGGEGSIDCVAFINDEHFV 342 (479)
T ss_pred --------ceeeechhcc-cceEEeccccceeEEEeccccc----------------eeeeeCCCCCeeeEEEeccccee
Confidence 6788876664 6778888899999999996542 34455567899999998876655
Q ss_pred EEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc
Q 009266 277 VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (538)
Q Consensus 277 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~ 356 (538)
..+.+|.|.+|++.+.+++...+... .....+..-..+..|++++. .|...
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AH----------------------------gv~~~~~~~~~~~Witsla~-i~~sd 393 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAH----------------------------GVIPELDPVNGNFWITSLAV-IPGSD 393 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccc----------------------------cccCCccccccccceeeeEe-cccCc
Confidence 55557899999998865544322100 00000011111124899998 89999
Q ss_pred EEEEeccCCeEEEeeccCc----ceeEEeecCcceeeEEeecCCCCeE-EEeecCCceEEecCC
Q 009266 357 YVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPHSTVL-ASSGIESDIKILTPN 415 (538)
Q Consensus 357 ~l~~gs~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~vw~~~ 415 (538)
++|+|+.+|.|++|.+..+ .++..+. -.+.|++|+|+++|+.| |..+....+--|-..
T Consensus 394 L~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 394 LLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred eEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 9999999999999999877 3445554 46789999999999954 555666666555443
No 92
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=7e-30 Score=242.66 Aligned_cols=273 Identities=16% Similarity=0.191 Sum_probs=200.6
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceee------------eeccCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL------------SFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~------------~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
|-..|.....++++..+++++.+.....|+...+..+. ..+.+|.+.|++++|+|+ ++.+|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence 44556667777777777777777777777754433221 124789999999999984 57799999999
Q ss_pred CcEEEeecccCce-----eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcce
Q 009266 128 GQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (538)
Q Consensus 128 g~v~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (538)
++|++|++.+... .....+.+|...|.+++|+|.+.++|++++.|++|+|||+++++.+..+..+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h---------- 167 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH---------- 167 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC----------
Confidence 9999999976532 1223478999999999999987679999999999999999998877666543
Q ss_pred eeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCc-cceEEEEEcCCCCEEEEEc-
Q 009266 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ-VGITGLAFSDQSELLVSYN- 280 (538)
Q Consensus 203 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~- 280 (538)
...|.+++|+|+ +.+|++++.|++|+|||+++++... . ...|. ..+..+.|.+++..|++++
T Consensus 168 ~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~--------------t-l~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 168 SDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVS--------------S-VEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred CCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEE--------------E-EecCCCCcceEEEEcCCCCeEEEEec
Confidence 337999999997 7899999999999999999875321 1 12232 2345678888877766543
Q ss_pred ----CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc
Q 009266 281 ----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (538)
Q Consensus 281 ----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~ 356 (538)
++.|++||+++.. ........+... .+....| +++++
T Consensus 232 s~s~Dr~VklWDlr~~~-------------------------------------~p~~~~~~d~~~-~~~~~~~-d~d~~ 272 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMA-------------------------------------SPYSTVDLDQSS-ALFIPFF-DEDTN 272 (493)
T ss_pred CCCCCCeEEEEeCCCCC-------------------------------------CceeEeccCCCC-ceEEEEE-cCCCC
Confidence 4589999987631 112222222222 1334445 99999
Q ss_pred EEEEec-cCCeEEEeeccCcceeEEeec-CcceeeEEeecCCCC
Q 009266 357 YVVSGS-DCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHST 398 (538)
Q Consensus 357 ~l~~gs-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~ 398 (538)
+|++|+ .|+.|++|++.+++++..+.. +..++..++|.|...
T Consensus 273 ~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 273 LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc
Confidence 999887 599999999999988776654 345788999988643
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.4e-31 Score=225.71 Aligned_cols=276 Identities=20% Similarity=0.320 Sum_probs=222.7
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
.|..-..+++|+.||.|+|||+.+..++ .++++|.+.|..|++.. ..++|++.|.+|
T Consensus 75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~---------------------~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 75 HPNKLSTVASGSCDGEVKIWNLSQRECI---------------------RTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred CcchhhhhhccccCceEEEEehhhhhhh---------------------heeecccCceeeEEecc--cceEEecCCcce
Confidence 3333467999999999999999977664 77999999999999986 678899999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcE
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
+.|.+.. .++.+++ ..+.+..|.-+. .+..++||+. .|.|||......+.. +.-....|.++.|+|....+
T Consensus 132 K~wk~~~-~p~~til--g~s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~s--mswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 132 KQWKIDG-PPLHTIL--GKSVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSS--MSWGADSISSVKFNPVETSI 202 (433)
T ss_pred eeeeccC-Ccceeee--cccccccccccc--ccccccccCc--eeeecccccCCccce--eecCCCceeEEecCCCcchh
Confidence 9999774 4666663 345667777766 6788899885 699999977666655 55566789999999998889
Q ss_pred EEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
|++|+.|+.|.+||++++.+++.+... ..-+.|+|+|. ...|++|.+|..++.||++...
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi~~-----------mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~-------- 262 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVILT-----------MRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLS-------- 262 (433)
T ss_pred eeeeccCCceEEEecccCCccceeeee-----------ccccceecCcc-ccceeeccccccceehhhhhhc--------
Confidence 999999999999999999988776532 24688999994 8899999999999999999875
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
.+......|-..|..+.|+|.|+-+++|+ +.+|+||.+..+....
T Consensus 263 ------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd---------------------------- 308 (433)
T KOG0268|consen 263 ------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD---------------------------- 308 (433)
T ss_pred ------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh----------------------------
Confidence 35566677889999999999999999999 5599999988643211
Q ss_pred CCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeE
Q 009266 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~ 379 (538)
.+.. .....|.+|.| |.+.+|+++||.|+.|++|.....+.+.
T Consensus 309 ----------iYht-kRMq~V~~Vk~-S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 309 ----------IYHT-KRMQHVFCVKY-SMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ----------hhhH-hhhheeeEEEE-eccccEEEecCCCcceeeeecchhhhcC
Confidence 1111 11123899999 9999999999999999999986654443
No 94
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=9.1e-30 Score=233.05 Aligned_cols=378 Identities=14% Similarity=0.173 Sum_probs=276.8
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcC----CcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK----HRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
..++|++|+.+|+|+||+..|-..+.+...+-+.+..-... .++...+.+ ---...++.|.|....|.+.-.|..
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~-~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhS 347 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL-SQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHS 347 (1080)
T ss_pred ecceEEEeeccceeeecCcchhhhccccccccccccchhhc-ccccccccccCcccCCceeEEEecCCCceEEEEEcCce
Confidence 46789999999999999998765544432222221110000 011111111 1123457889999999999999999
Q ss_pred EEEEECCCCceeeee--ccCCCCCeEEEEEeec---------CCCceEEEEeCCCcEEEeecccCce--eee-ee-----
Q 009266 85 VILWDWKTERVKLSF--HSGHNDNVFQAKIMPF---------TDDRSIVTCAADGQVRHAQILERGG--VET-KL----- 145 (538)
Q Consensus 85 i~iw~~~~~~~~~~~--~~~~~~~v~~l~~~~~---------~~~~~l~s~~~dg~v~vwd~~~~~~--~~~-~~----- 145 (538)
|+|||+..-+.+.+. ...|...|+.+.-.|. -....+++|+.|++|++|++..... +.. ..
T Consensus 348 lYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l 427 (1080)
T KOG1408|consen 348 LYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL 427 (1080)
T ss_pred EEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhh
Confidence 999999764432221 1368888888876651 0124689999999999999875211 100 00
Q ss_pred ---------------------------ccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCC
Q 009266 146 ---------------------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR 198 (538)
Q Consensus 146 ---------------------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 198 (538)
.-.....+++++++|++ +.|++|..-|.|+||++...+....+..
T Consensus 428 ~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eA------- 499 (1080)
T KOG1408|consen 428 SKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEA------- 499 (1080)
T ss_pred hcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheec-------
Confidence 01133468999999999 7899999999999999998877766665
Q ss_pred CcceeeeeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC--C
Q 009266 199 NYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--E 274 (538)
Q Consensus 199 ~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~ 274 (538)
|...|.|+.|+.- +.++||+++.|+-|++||+... +.+......|...|+++.|...| .
T Consensus 500 ---HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--------------y~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 500 ---HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--------------YDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred ---ccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--------------cchhhhhcccccceeEEEEeecCCce
Confidence 4458999999853 2368999999999999998764 24566777889999999999887 5
Q ss_pred EEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccc---cceeeeEEEEe
Q 009266 275 LLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR---NCVTVKGVNFF 351 (538)
Q Consensus 275 ~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~v~~~ 351 (538)
.+++++.++..+|+..... .....+..|. ...+++.+..
T Consensus 563 ~MiscGADksimFr~~qk~-------------------------------------~~g~~f~r~t~t~~ktTlYDm~V- 604 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKA-------------------------------------SSGRLFPRHTQTLSKTTLYDMAV- 604 (1080)
T ss_pred EEEeccCchhhheehhccc-------------------------------------cCceeccccccccccceEEEeee-
Confidence 6777776665566654310 0011111111 1235889998
Q ss_pred cCCCcEEEEeccCCeEEEeeccCcceeEEeec---CcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc-cccCccce
Q 009266 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIE 427 (538)
Q Consensus 352 s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~~~ 427 (538)
.|..+++++++.|..|+||++.+|+.++.|++ |.+....+...|.|.|||+.+.|+++.++|..++++ .++.+|.+
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE 684 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE 684 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch
Confidence 99999999999999999999999999999975 557788899999999999999999999999999988 67899999
Q ss_pred eeeecc---cCceeeeccCCCCCcee
Q 009266 428 QVLIPD---HIRWFALGDDDDGDYYF 450 (538)
Q Consensus 428 ~~~~~~---~~~~l~s~~~d~~~~~~ 450 (538)
.|+-+. +-+-|++++.|+..|+|
T Consensus 685 ~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 685 AVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred heeeeeecccchhheeecCCceEEEE
Confidence 888666 34499999999999999
No 95
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=4.2e-29 Score=228.08 Aligned_cols=403 Identities=17% Similarity=0.205 Sum_probs=280.7
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCC---EEEEecCCCe
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD---ILISGSDDRR 84 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~---~l~t~~~d~~ 84 (538)
++.-+|+.|+.+..|.|+.-.++ +++.+..+.||.+.|.+|+|...+. +||++|.|..
T Consensus 157 ~~~~lla~Ggs~~~v~~~s~~~d-------------------~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y 217 (764)
T KOG1063|consen 157 NKTFLLACGGSKFVVDLYSSSAD-------------------SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY 217 (764)
T ss_pred CCcEEEEecCcceEEEEeccCCc-------------------ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE
Confidence 44445777777777777765533 3455789999999999999997554 8999999999
Q ss_pred EEEEECCCCc------------------------eee------eeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEee
Q 009266 85 VILWDWKTER------------------------VKL------SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (538)
Q Consensus 85 i~iw~~~~~~------------------------~~~------~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd 134 (538)
||||.+.-+. .+. .++.||...|+++.|+| .+..|++++.|.++.+|.
T Consensus 218 IRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~ 295 (764)
T KOG1063|consen 218 IRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWK 295 (764)
T ss_pred EEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceEEEe
Confidence 9999874222 011 23469999999999999 999999999999999999
Q ss_pred cccCceeee-----eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 135 ILERGGVET-----KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 135 ~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
..+...+.. -...+.........|+|++ +.+++-+.-|..++|.......-.... ...| |...|+.+
T Consensus 296 pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~~~-----~iSG--H~~~V~dv 367 (764)
T KOG1063|consen 296 PDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQEP-----VISG--HVDGVKDV 367 (764)
T ss_pred cCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccceeecc-----cccc--ccccceee
Confidence 876543321 1123445568899999999 788999999999999832222111111 1123 55589999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEee
Q 009266 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFT 288 (538)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d 288 (538)
+|+|. |.+|++.+.|.+-|+|-.-..+ .....+.+| .-|...++|++|-+....++++.+. -+++|.
T Consensus 368 ~W~ps-GeflLsvs~DQTTRlFa~wg~q-~~wHEiaRP----------QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 368 DWDPS-GEFLLSVSLDQTTRLFARWGRQ-QEWHEIARP----------QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred eecCC-CCEEEEeccccceeeecccccc-cceeeeccc----------ccccccceeeehccCCceeeecccceeeeeec
Confidence 99998 7899999999999998765222 222222222 1256789999999865566777655 578998
Q ss_pred ccCCC----------CCCCCCCCCccccccccccC---------CCCcc---------------ccCCCCCC----CCcc
Q 009266 289 QDMGL----------GPNPPPSSPVSTRSEASEMG---------SDHTS---------------AASPSTAN----TDVR 330 (538)
Q Consensus 289 ~~~~~----------~~~~~~~~~~~~~~~~~~~~---------~~~~~---------------~~~~~~~~----~~~~ 330 (538)
....- ........|.+......-.+ ..+.. +......+ ....
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 65321 11111011111100000000 00000 00000000 0123
Q ss_pred cCCceeeccccceeeeEEEEecCCCcEEEEeccC-----CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeec
Q 009266 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (538)
Q Consensus 331 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (538)
+..+.+.||... |.+++. +|+|++||+++.. ..|++|+..+...+..+.+|+-.|+.|+|||++++|++.|.
T Consensus 516 PEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 516 PEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred hhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence 455778888886 999998 9999999998765 46999999999999999999999999999999999999999
Q ss_pred CCceEEecCCCCcc-----cccCccceeeeecc--cCc-eeeeccCCCCCceeeccc
Q 009266 406 ESDIKILTPNAADR-----ATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYFYDIY 454 (538)
Q Consensus 406 dg~v~vw~~~~~~~-----~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~~~~~ 454 (538)
|+++.+|....... ..+..|..-|.... |+. +++++|+|+...+|....
T Consensus 593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 99999999865533 22455666666655 777 799999999999986543
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=229.35 Aligned_cols=276 Identities=16% Similarity=0.256 Sum_probs=225.0
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
|-++...|+||+.|..|++|++..++. ....+|.|..+.|+.+.|.++++++++++.|+.+
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKS-------------------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchh-------------------hhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 445667899999999999999985552 2356788889999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcE
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
++|++...+...++ .+|...|+++.|.. ....+++|+.|.+|++||+....+.... + ....+..|+.++ ..
T Consensus 244 r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~--~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l--~~S~cnDI~~~~---~~ 314 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTL-SGHTDKVTAAKFKL--SHSRVVSGSADRTIKLWDLQKAYCSKTV-L--PGSQCNDIVCSI---SD 314 (459)
T ss_pred eeeeccchhhhhhh-cccccceeeehhhc--cccceeeccccchhhhhhhhhhheeccc-c--ccccccceEecc---ee
Confidence 99999999988887 89999999999997 5556999999999999999987776542 2 334566777763 56
Q ss_pred EEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
+++|-.|+.||+||+++..+....... +.|+++..+++ +..|++++.|.++.++|+++......+.
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~g-----------g~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~~s-- 380 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLG-----------GRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQTFS-- 380 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecC-----------cceeeEeeccC-CeEEeeecCCCceeeeecccccEEEEee--
Confidence 899999999999999999988887743 37999999997 7888888999999999999987543321
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
....... ...+.+.|||++.|+++|+ ++.|+||++.+++
T Consensus 381 -------A~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK------------------------------- 420 (459)
T KOG0288|consen 381 -------AEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK------------------------------- 420 (459)
T ss_pred -------ccccccc--cccceeEECCCCceeeeccCCCcEEEEEccCce-------------------------------
Confidence 1122222 2488899999999999998 7799999999853
Q ss_pred CCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
+...+........|+++.| +|.|.+|++++.++.+.+|.
T Consensus 421 -------lE~~l~~s~s~~aI~s~~W-~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 421 -------LEKVLSLSTSNAAITSLSW-NPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -------EEEEeccCCCCcceEEEEE-cCCCchhhcccCCcceEecC
Confidence 3344444333334999999 99999999999999999993
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5e-30 Score=234.75 Aligned_cols=330 Identities=13% Similarity=0.158 Sum_probs=250.7
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC-----------CC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-----------GD 74 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----------g~ 74 (538)
|.+....|.+...|+.++|||+..-.... ....+-.|...|+.+.--|. ..
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~kvg------------------k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~ 393 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNKVG------------------KCSSMLYHSACIWDVENLPCNVHSPTAACLPRG 393 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEecccccccc------------------ceeeeeeccceeeeeccccccccCcccccCCcc
Confidence 56677889999999999999998544332 23445568888888877662 23
Q ss_pred EEEEecCCCeEEEEECCCCc---eee-ee--------------------------------ccCCCCCeEEEEEeecCCC
Q 009266 75 ILISGSDDRRVILWDWKTER---VKL-SF--------------------------------HSGHNDNVFQAKIMPFTDD 118 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~---~~~-~~--------------------------------~~~~~~~v~~l~~~~~~~~ 118 (538)
.++|++.|++||+|++..+. ..+ .+ .-.....+.+|+.+| +|
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp--~g 471 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP--DG 471 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC--Cc
Confidence 68999999999999987521 100 00 012334799999999 99
Q ss_pred ceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCC--CCcEEEEEcCCCcEEEEecCCCC-eeeeeeecccC
Q 009266 119 RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPID 195 (538)
Q Consensus 119 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~ 195 (538)
++||+|..-|+++||++........ ...|...|.|+.|+.- +.++|++++.|..|+|||+...- .++++-.
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~~~~--~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~---- 545 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEYTCF--MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG---- 545 (1080)
T ss_pred ceecccCccCceEEEEehhhhhhhh--eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc----
Confidence 9999999999999999987766655 7889999999999852 34689999999999999987542 3333332
Q ss_pred CCCCcceeeeeEEEEEcCCCC-cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC
Q 009266 196 DRRNYMTVVNLNAIAIDPRNA-NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (538)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (538)
|...|+++.|.-.+. ..+++++.|..|.+ +.....-.+ .. .+..........+..++..|..+
T Consensus 546 ------HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g--------~~-f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 546 ------HSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSG--------RL-FPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred ------cccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCc--------ee-ccccccccccceEEEeeeCCCcc
Confidence 455899999987632 67888888887754 332211000 00 11222222356789999999999
Q ss_pred EEEEEcC-CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccc-eeeeEEEEec
Q 009266 275 LLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFG 352 (538)
Q Consensus 275 ~l~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~~s 352 (538)
++++++. .+|+||++..++ ..+.|++.... .....+.. .
T Consensus 610 ~v~t~cQDrnirif~i~sgK--------------------------------------q~k~FKgs~~~eG~lIKv~l-D 650 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGK--------------------------------------QVKSFKGSRDHEGDLIKVIL-D 650 (1080)
T ss_pred eEEEEecccceEEEeccccc--------------------------------------eeeeecccccCCCceEEEEE-C
Confidence 9999884 589999999854 44555553322 34777887 9
Q ss_pred CCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 353 ~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
|.|.|||+...|.++.++|..+|+++.++.+|...|+.+.|.++.+.|++.+.||.|.||.+..
T Consensus 651 PSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 651 PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999999999999999999999999999999999999999998753
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.1e-28 Score=191.75 Aligned_cols=300 Identities=17% Similarity=0.215 Sum_probs=229.1
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECC------CC--------ceeeeeccCCCCCeEEEEEeecC
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK------TE--------RVKLSFHSGHNDNVFQAKIMPFT 116 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~------~~--------~~~~~~~~~~~~~v~~l~~~~~~ 116 (538)
+..+..|. ....|.+++|+|.|.+.|.|+...+++|--.. .+ ..+.+..+.|.+.|+|.+|+|
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-- 99 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-- 99 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC--
Confidence 44455554 56789999999999999999999998886432 11 112222367899999999999
Q ss_pred CCceEEEEeCCCcEEEeecccCceee---eeeccccCCCcEEEEEcCC---CCcEEEEEc-CCCcEEEEecCCCCeeeee
Q 009266 117 DDRSIVTCAADGQVRHAQILERGGVE---TKLLGKHQGRAHKLAIEPG---SPHVFYTCG-EDGLVQHFDLRTGAATELF 189 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 189 (538)
.|.+|++|+.|.+|++..++...+.. ...+..|.+.|+.++|..+ +..+|++++ .|..|++-|..+++....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 99999999999999998876544322 2347789999999999743 335677665 4567888888888887777
Q ss_pred eecccCCCCCcceeeeeEEE-EEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEE
Q 009266 190 TCRPIDDRRNYMTVVNLNAI-AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA 268 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 268 (538)
..+. +.|.++ .|+ +.+|++|+.|.+|++||++-.......... .+-.+-....|.+++
T Consensus 180 sght----------ghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------~~~~glessavaav~ 238 (350)
T KOG0641|consen 180 SGHT----------GHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDND--------FHDGGLESSAVAAVA 238 (350)
T ss_pred cCCc----------ccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCc--------ccCCCcccceeEEEE
Confidence 6543 245554 343 689999999999999999976543321110 011111246899999
Q ss_pred EcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeE
Q 009266 269 FSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKG 347 (538)
Q Consensus 269 ~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (538)
..|.|++|+++..+ ...+||++. ...++.+..|... |.+
T Consensus 239 vdpsgrll~sg~~dssc~lydirg--------------------------------------~r~iq~f~phsad--ir~ 278 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRG--------------------------------------GRMIQRFHPHSAD--IRC 278 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeC--------------------------------------CceeeeeCCCccc--eeE
Confidence 99999999999855 799999987 4567778888876 999
Q ss_pred EEEecCCCcEEEEeccCCeEEEeeccCc----ceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 348 VNFFGPKCEYVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 348 v~~~s~~~~~l~~gs~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
|.| ||...||++++.|..|++-|++.- -++.....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 279 vrf-sp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 279 VRF-SPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEe-CCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999 999999999999999999998532 1233445688889999999999999999999999999764
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.1e-30 Score=228.54 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=208.8
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcC-CcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
+.|.|.++++|+.|-+|++||++ |-- .+++..+.|.. -...|++++|++.|..|++.+....
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~-gMd----------------as~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQ-GMD----------------ASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ecCCCceeeeccccceEEEEecc-ccc----------------ccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 35778899999999999999998 321 11112223332 3457999999999998888888889
Q ss_pred EEEEECCCCceeeee------------ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee----eeeccc
Q 009266 85 VILWDWKTERVKLSF------------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE----TKLLGK 148 (538)
Q Consensus 85 i~iw~~~~~~~~~~~------------~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~ 148 (538)
++|+|.. |..+..+ .++|...++|.+|+|. +...+++++.||++|||++...+... .....+
T Consensus 238 akl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 238 AKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred eeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccC-cccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 9999965 4333322 2689999999999994 55688999999999999998654321 122234
Q ss_pred cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeE
Q 009266 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (538)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 228 (538)
..-+++.++|+|++ .+||+|+.||.|.+|+.........+.... .|.....|+||.|+++ |++|++-+.|+++
T Consensus 316 ~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~-----AH~~g~~Itsi~FS~d-g~~LlSRg~D~tL 388 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKD-----AHLPGQDITSISFSYD-GNYLLSRGFDDTL 388 (641)
T ss_pred cccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeee-----ccCCCCceeEEEeccc-cchhhhccCCCce
Confidence 45578999999999 689999999999999986554433333322 2334448999999998 8999999999999
Q ss_pred EEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-------CeEEEeeccCCCCCCCCCCC
Q 009266 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-------EFIYLFTQDMGLGPNPPPSS 301 (538)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------~~i~~~d~~~~~~~~~~~~~ 301 (538)
++||++..+..-....+ .....+-+.++|||+.++|++|+. +.+++|+..+-
T Consensus 389 KvWDLrq~kkpL~~~tg------------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~--------- 447 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTG------------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL--------- 447 (641)
T ss_pred eeeeccccccchhhhcC------------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---------
Confidence 99999987631110000 011345678999999999999862 35888887652
Q ss_pred CccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
..+..+.-... .|..+.| +|.-+.|++|+.||.++||=
T Consensus 448 -----------------------------d~v~ki~i~~a--Svv~~~W-hpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 448 -----------------------------DTVYKIDISTA--SVVRCLW-HPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred -----------------------------eeEEEecCCCc--eEEEEee-cchhhheeeecCCCceEEEE
Confidence 22333333333 3888888 99999999999999999874
No 100
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.7e-30 Score=226.06 Aligned_cols=251 Identities=31% Similarity=0.560 Sum_probs=189.4
Q ss_pred ccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEE
Q 009266 43 ASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV 122 (538)
Q Consensus 43 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~ 122 (538)
+......++.+.+.|.||++.|+|+.|+.+|.+|++||.|-.+.|||....++++.+..+|...|.++.|.|..+...++
T Consensus 32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence 33444567788899999999999999999999999999999999999998899999989999999999999988889999
Q ss_pred EEeCCCcEEEeecccCc--------eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeee-eeecc
Q 009266 123 TCAADGQVRHAQILERG--------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRP 193 (538)
Q Consensus 123 s~~~dg~v~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~ 193 (538)
+|..|..|+++|+...+ ......+..|...|..|+..|.+|+.+.+++.||+|+-+|++....... ..++.
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 99999999999997522 2334457789999999999999999999999999999999997532211 10100
Q ss_pred cCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccc----cCCCCCCCC-----CcccCCCCccCC-----
Q 009266 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW----DGSTDFGQP-----ADYFCPPNLIGD----- 259 (538)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~----- 259 (538)
.. ..-+.......|+.++|.+..+|++|+.+-.+++||.+.... .+.....+| +..+++..+...
T Consensus 192 ~l-~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 192 IL-VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HH-HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 00 000001236789999999999999999999999999653321 111122223 445555554211
Q ss_pred -CccceEEEEEcCCCCEE-EEEcCCeEEEeeccCCCC
Q 009266 260 -EQVGITGLAFSDQSELL-VSYNDEFIYLFTQDMGLG 294 (538)
Q Consensus 260 -~~~~i~~~~~s~~~~~l-~~~~~~~i~~~d~~~~~~ 294 (538)
....++.++|+|+|.-| ++-+...|++|++..++.
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 11236778999999754 555566999999987653
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=208.99 Aligned_cols=265 Identities=15% Similarity=0.189 Sum_probs=210.6
Q ss_pred EEEecCCCeEEEEECCCCc------------eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee
Q 009266 76 LISGSDDRRVILWDWKTER------------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (538)
Q Consensus 76 l~t~~~d~~i~iw~~~~~~------------~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 143 (538)
|+.|+....|.-+.+.-.. ++..+ ..|.++|+++|. ++.++|+|+.|-+|+|||+.+......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~-~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF-SAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccc-cccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcc
Confidence 5566666666555543211 12333 689999999999 569999999999999999998877766
Q ss_pred eeccccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE
Q 009266 144 KLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
+..|.+.|+++.|.+.. ...|++|+.||.|.+|+.....++..++.| ...|+.++.+|. +++.++.
T Consensus 79 --ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H----------~~~Vt~lsiHPS-~KLALsV 145 (362)
T KOG0294|consen 79 --LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAH----------KGQVTDLSIHPS-GKLALSV 145 (362)
T ss_pred --eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccc----------ccccceeEecCC-CceEEEE
Confidence 77899999999999865 236899999999999999998888888764 336999999998 7899999
Q ss_pred eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCC
Q 009266 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 223 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~ 302 (538)
+.|+.+++|++-.++...... -....+.+.|+|.|.+++....+.|-+|.+.+......
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~~----------------L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~----- 204 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVLN----------------LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE----- 204 (362)
T ss_pred cCCceeeeehhhcCccceeec----------------cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhh-----
Confidence 999999999999886321111 11233449999999999999999999999876322211
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 382 (538)
+. .+..+.++.| -++.+|++|..++.|++||..+..++..+.
T Consensus 205 ---------------------------------i~---~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~ 246 (362)
T KOG0294|consen 205 ---------------------------------IE---NPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFL 246 (362)
T ss_pred ---------------------------------hh---ccccceeeee--cCCceEEEecCCceEEEeccCCCccceeee
Confidence 11 1123667766 467899999999999999999999999999
Q ss_pred cCcceeeEEee--cCCCCeEEEeecCCceEEecCCCC
Q 009266 383 ADRHVVNCIEP--HPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 383 ~h~~~v~~~~~--s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
+|..+|..+.+ .|.+.+|+|+|.||.|+||++...
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999985 567889999999999999999875
No 102
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=6.4e-29 Score=236.87 Aligned_cols=251 Identities=12% Similarity=0.105 Sum_probs=185.8
Q ss_pred ecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCC-CceEEEEeCCCcEEEeecccCcee------eeeeccccCC
Q 009266 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGV------ETKLLGKHQG 151 (538)
Q Consensus 79 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~------~~~~~~~~~~ 151 (538)
|+..+.|++|+......+..+ .+|...|.+++|+| . +.+|++|+.|++|+||++.++... ....+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 667889999998776666665 89999999999999 6 789999999999999999764321 1224678999
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 231 (538)
.|.+++|+|.+..+|++++.|++|+|||+++++....+. +...|.+++|+|+ +.+|++++.|+.|+||
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------~~~~V~Slswspd-G~lLat~s~D~~IrIw 194 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------MPKKLSSLKWNIK-GNLLSGTCVGKHMHII 194 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------cCCcEEEEEECCC-CCEEEEEecCCEEEEE
Confidence 999999999986677899999999999999988765554 2236999999998 7899999999999999
Q ss_pred EcCCccccCCCCCCCCCcccCCCCccCCCccce-----EEEEEcCCCCEEEEEc-CC----eEEEeeccCCCCCCCCCCC
Q 009266 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI-----TGLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSS 301 (538)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~s~~~~~l~~~~-~~----~i~~~d~~~~~~~~~~~~~ 301 (538)
|+++++... ....|...+ ....|++++.+|++++ ++ .|+|||++..
T Consensus 195 D~Rsg~~i~---------------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------- 250 (568)
T PTZ00420 195 DPRKQEIAS---------------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------- 250 (568)
T ss_pred ECCCCcEEE---------------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC---------
Confidence 999876321 122333332 2334568888888766 43 6999998852
Q ss_pred CccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEe
Q 009266 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (538)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~ 381 (538)
..++..+..+.....+..... .++|.++++|+.|+.|++|++..+.+ ..+
T Consensus 251 ----------------------------~~pl~~~~ld~~~~~L~p~~D-~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l 300 (568)
T PTZ00420 251 ----------------------------TSALVTMSIDNASAPLIPHYD-ESTGLIYLIGKGDGNCRYYQHSLGSI-RKV 300 (568)
T ss_pred ----------------------------CCceEEEEecCCccceEEeee-CCCCCEEEEEECCCeEEEEEccCCcE-Eee
Confidence 222333332222212333333 66789999999999999999977643 222
Q ss_pred e--cCcceeeEEeecCCCC
Q 009266 382 E--ADRHVVNCIEPHPHST 398 (538)
Q Consensus 382 ~--~h~~~v~~~~~s~~~~ 398 (538)
. .+..++.+++|.|...
T Consensus 301 ~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cccccCCCccceEEccccc
Confidence 2 2456789999999754
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=235.26 Aligned_cols=242 Identities=19% Similarity=0.235 Sum_probs=200.5
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
..|.+++|+||++||.|++|++..-.-.. .-+....++.|...|+.++...+|+.|+++|.|-+|
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEP---------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred cCCCCceEEecCCCceEEEeccccccCCc---------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 35778889999999999999987432210 011356788999999999999999999999999999
Q ss_pred EEEECCCCc--eeeeeccCCCCCeEEEEE-eecCCCceEEEEeCCCcEEEeecccCce--------eeeeecc-ccCCCc
Q 009266 86 ILWDWKTER--VKLSFHSGHNDNVFQAKI-MPFTDDRSIVTCAADGQVRHAQILERGG--------VETKLLG-KHQGRA 153 (538)
Q Consensus 86 ~iw~~~~~~--~~~~~~~~~~~~v~~l~~-~~~~~~~~l~s~~~dg~v~vwd~~~~~~--------~~~~~~~-~~~~~v 153 (538)
++|+...+. ++.++ ..|...|.||++ .+ +..++|+|+.|+.|.||++.++.. +....+. ++...|
T Consensus 98 K~W~~~~~~~~c~sti-r~H~DYVkcla~~ak--~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAK--NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred EEeecccCcchhHhhh-hcccchheeeeeccc--CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 999998773 44444 889999999999 66 889999999999999999987632 2222234 788999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 009266 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 233 (538)
.+++.++.+ .+|++|+..+.|++||.++.+.+..++.|. ..|+++..+++ |..+++++.||+|++|++
T Consensus 175 YSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHT----------dNVr~ll~~dD-Gt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 175 YSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHT----------DNVRVLLVNDD-GTRLLSASSDGTIRLWDL 242 (735)
T ss_pred eeeecCCcc-eEEEecCcccceEEeccccccceeeeeccc----------cceEEEEEcCC-CCeEeecCCCceEEeeec
Confidence 999999999 799999999999999999999888887643 47999999998 799999999999999999
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
...+ |+.... .|...|.++..+|+-..+.+|+ ++.|+.=++++.
T Consensus 243 gqQr--------------Cl~T~~-vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 243 GQQR--------------CLATYI-VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cccc--------------eeeeEE-eccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9866 444433 3566699999999999999988 668998888773
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.8e-29 Score=229.27 Aligned_cols=284 Identities=19% Similarity=0.254 Sum_probs=236.5
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceee-eeccCCCCCeEE-EEEeecCCCceEEEEeCCC
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQ-AKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~-~~~~~~~~~v~~-l~~~~~~~~~~l~s~~~dg 128 (538)
+++.+.+.||...|..+++.+. ..++++|.||++++|.-..++.+. ....+|.+.|.. ++|-+ .++..|++|+.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccc
Confidence 3567889999999999998764 489999999999999976555443 334677787777 88886 4677899999999
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
+|.+|.+.+...... +.+|...|.+++...++ . +++|+.|.++++|-. +++...+.. |...|++
T Consensus 82 ~i~v~~~~~~~P~~~--LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~--~~l~~~l~g----------H~asVWA 145 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYT--LKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRI--GELVYSLQG----------HTASVWA 145 (745)
T ss_pred eEEEEecCCCCchhh--hhccccceeeeecCCcC-c-eEecccccceEEecc--hhhhcccCC----------cchheee
Confidence 999999988777766 99999999999988877 3 899999999999954 444444443 5558999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEee
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d 288 (538)
+++-|. +.+++|+.|.+|++|.-.+ ....+.+|...|+++++-+++.+|.++.+|.|++|+
T Consensus 146 v~~l~e--~~~vTgsaDKtIklWk~~~-----------------~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~ 206 (745)
T KOG0301|consen 146 VASLPE--NTYVTGSADKTIKLWKGGT-----------------LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWD 206 (745)
T ss_pred eeecCC--CcEEeccCcceeeeccCCc-----------------hhhhhccchhheeeeEEecCCCeEeecCCceEEEEe
Confidence 999996 4999999999999998743 234556689999999999999888888899999999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
+. +..+..+.+|++. ++++.. .+++..+++++.|++++
T Consensus 207 ~~---------------------------------------ge~l~~~~ghtn~--vYsis~-~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 207 LD---------------------------------------GEVLLEMHGHTNF--VYSISM-ALSDGLIVSTGEDRTLR 244 (745)
T ss_pred cc---------------------------------------CceeeeeeccceE--EEEEEe-cCCCCeEEEecCCceEE
Confidence 85 4577888899986 888886 78888999999999999
Q ss_pred EeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
||+.. .+++.+......|+++.+-++|. |++|+.||.||||....
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 99975 78888876667899999988887 77788899999998764
No 105
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=216.06 Aligned_cols=351 Identities=17% Similarity=0.217 Sum_probs=259.4
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc-CcEEEEEEcCCCCEEEEecCCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
|.|-+.+++++.+ .+.+.+|.++.+.+.++ ...+..+. ..|.|++|.++|. ++||..+|
T Consensus 208 FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~------------------~~~fek~ekk~Vl~v~F~engd-viTgDS~G 267 (626)
T KOG2106|consen 208 FHPTDPNLIITCG-KGHLYFWTLRGGSLVKR------------------QGIFEKREKKFVLCVTFLENGD-VITGDSGG 267 (626)
T ss_pred eccCCCcEEEEeC-CceEEEEEccCCceEEE------------------eeccccccceEEEEEEEcCCCC-EEeecCCc
Confidence 4555555566655 67999999998877532 33344333 6799999999986 67999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee----------------------
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV---------------------- 141 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~---------------------- 141 (538)
.|.||+..+.+...+.. .|.+.|.+++... +|. |++|+.|..|..|+-.-.+..
T Consensus 268 ~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr--~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH-AHDGGVFSLCMLR--DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred eEEEEeCCCceEEeEee-ecCCceEEEEEec--Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 99999998777777775 9999999999997 775 555999999999983211100
Q ss_pred ----------------eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeee
Q 009266 142 ----------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 142 ----------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
......+|......++.+|.. .++++++.|+.+++|+ ..+...... ...+
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~k~~wt~~-----------~~d~ 409 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DHKLEWTKI-----------IEDP 409 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--CCceeEEEE-----------ecCc
Confidence 011234588888999999988 6789999999999998 444444433 2236
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeE
Q 009266 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (538)
+.|+.|+|. + .+|.|+..|...+.|..+..+ ..+... ..++++++|+|+|.+||.++ ++.|
T Consensus 410 ~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~l---------------v~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 410 AECADFHPS-G-VVAVGTATGRWFVLDTETQDL---------------VTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred eeEeeccCc-c-eEEEeeccceEEEEeccccee---------------EEEEec-CCceEEEEEcCCCCEEEEecCCCeE
Confidence 899999997 5 999999999999999988542 222222 67899999999999999999 6689
Q ss_pred EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC
Q 009266 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
+||.+... +.....+..+.. .+|+.+.| |++++||.+-+.|
T Consensus 472 yiy~Vs~~-------------------------------------g~~y~r~~k~~g-s~ithLDw-S~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 472 YIYRVSAN-------------------------------------GRKYSRVGKCSG-SPITHLDW-SSDSQFLVSNSGD 512 (626)
T ss_pred EEEEECCC-------------------------------------CcEEEEeeeecC-ceeEEeee-cCCCceEEeccCc
Confidence 99998764 233333443444 46999999 9999999999999
Q ss_pred CeEEEeeccCcceeEEe------------------ecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC----ccccc
Q 009266 365 GRIFIWKKKGGELIRVI------------------EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA----DRATL 422 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~------------------~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~----~~~~~ 422 (538)
-.|..|.....+.+... ..|...|+.++-+...++||+|...|+|++|...-. ....+
T Consensus 513 ~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~ 592 (626)
T KOG2106|consen 513 YEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEY 592 (626)
T ss_pred eEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceee
Confidence 99999954332222111 124456777778888899999999999999986432 23456
Q ss_pred Cccceeeeecc---cCceeeeccCCCCCcee
Q 009266 423 PTNIEQVLIPD---HIRWFALGDDDDGDYYF 450 (538)
Q Consensus 423 ~~~~~~~~~~~---~~~~l~s~~~d~~~~~~ 450 (538)
.+|...+..++ .+..+++.+.|.+.+.|
T Consensus 593 ~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW 623 (626)
T KOG2106|consen 593 GGHSSHVTNVAFLCKDSHLISTGKDTSIMQW 623 (626)
T ss_pred ccccceeEEEEEeeCCceEEecCCCceEEEE
Confidence 66777666665 66677777677776665
No 106
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=208.76 Aligned_cols=298 Identities=16% Similarity=0.185 Sum_probs=219.5
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 143 (538)
-.|+.|++.|.+||+|..+|.|.|||+.|... .+++.+|..+|.+++||+ +|++|+|++.|..|++||+..+.++..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-ar~lsaH~~pi~sl~WS~--dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-ARMLSAHVRPITSLCWSR--DGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch-hhhhhccccceeEEEecC--CCCEeeeecCCceeEEEeccCCCceeE
Confidence 78999999999999999999999999999875 445589999999999999 999999999999999999999987665
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
.. ...+|..+.|+|...+.++++-.+..-.+.++..++.. .+....... ......+..|.+. |+++++|.
T Consensus 103 ir---f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~d-----ln~sas~~~fdr~-g~yIitGt 172 (405)
T KOG1273|consen 103 IR---FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGD-----LNSSASHGVFDRR-GKYIITGT 172 (405)
T ss_pred EE---ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccc-----cccccccccccCC-CCEEEEec
Confidence 33 56889999999987666666655555555555542221 111111100 1112233468886 89999999
Q ss_pred CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCC
Q 009266 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~ 302 (538)
..|.+.+|+..+.+..... .......|..+.|+..|++|+..+.+ .|+.|+++.-.....-
T Consensus 173 sKGkllv~~a~t~e~vas~--------------rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~---- 234 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASF--------------RITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD---- 234 (405)
T ss_pred CcceEEEEecchheeeeee--------------eechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc----
Confidence 9999999999988754331 11113578999999999999887754 7999998742111000
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC-CeEEEeeccCcceeEEe
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVI 381 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d-g~i~iwd~~~~~~~~~~ 381 (538)
....+.+.++.-.+..+-.+++| |.+|.|+++|+.. ..++||....|.+++.|
T Consensus 235 -------------------------~e~e~~~K~qDvVNk~~Wk~ccf-s~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 235 -------------------------GEVEPEHKLQDVVNKLQWKKCCF-SGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred -------------------------CCcChhHHHHHHHhhhhhhheee-cCCccEEEeccccceeEEEEecCCcceeeee
Confidence 00111222332222223456777 9999999988754 57999999999999999
Q ss_pred ecCc-ceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 382 EADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 382 ~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
.|.. .....+.|+|-...|++- ..|.|+||.....+.
T Consensus 289 hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 289 HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred cCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 9887 567889999999999988 789999998765443
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=2.5e-29 Score=234.28 Aligned_cols=325 Identities=18% Similarity=0.307 Sum_probs=259.3
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+|-....+.||+|+..|.+-+||++..+++ ......|.+.|..+.|.|....|+|++.|+
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~--------------------~v~~nah~~sv~~~~fl~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLI--------------------NVTRNAHYGSVTGATFLPGEPVLVTAGADN 310 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeee--------------------eeeeccccCCcccceecCCCceEeeccCCC
Confidence 344445667888999999999999966554 345568999999999999999999999999
Q ss_pred eEEEEECCCCce---eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc---------------ee----
Q 009266 84 RVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG---------------GV---- 141 (538)
Q Consensus 84 ~i~iw~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~---------------~~---- 141 (538)
.+++|=..++.- +.++..||..+..+|+|.- ..+.++.+++.|++++.+.+.... .+
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~-~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG-SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFS 389 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeec-cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccc
Confidence 999996665443 3344579999999999984 278899999999888777652100 00
Q ss_pred ---------------------------------------------eeeec-----cccCCCcEEEEEcCCCCcEEEEEcC
Q 009266 142 ---------------------------------------------ETKLL-----GKHQGRAHKLAIEPGSPHVFYTCGE 171 (538)
Q Consensus 142 ---------------------------------------------~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~ 171 (538)
....+ +.....+++++.++.| ++.+.|+.
T Consensus 390 ~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S 468 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYS 468 (910)
T ss_pred hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEecc
Confidence 00000 0112568899999999 78899999
Q ss_pred CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCccc
Q 009266 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (538)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 251 (538)
.|.|-+|++++|-....+...+. |..+|+.++...- ++.+++++.+|.+++|+..+..+......
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~a-------h~~~V~gla~D~~-n~~~vsa~~~Gilkfw~f~~k~l~~~l~l------- 533 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSPA-------HKGEVTGLAVDGT-NRLLVSAGADGILKFWDFKKKVLKKSLRL------- 533 (910)
T ss_pred CCeEEEEEcccCeeecccccCcc-------ccCceeEEEecCC-CceEEEccCcceEEEEecCCcceeeeecc-------
Confidence 99999999999987777642221 6668999999987 68999999999999999998764433222
Q ss_pred CCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcc
Q 009266 252 CPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (538)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
...+.++..+....+++.+.++ .|+++|+.+ +
T Consensus 534 ---------~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t--------------------------------------~ 566 (910)
T KOG1539|consen 534 ---------GSSITGIVYHRVSDLLAIALDDFSIRVVDVVT--------------------------------------R 566 (910)
T ss_pred ---------CCCcceeeeeehhhhhhhhcCceeEEEEEchh--------------------------------------h
Confidence 3457778888887888888876 899999987 6
Q ss_pred cCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecC-Cce
Q 009266 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE-SDI 409 (538)
Q Consensus 331 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~v 409 (538)
+..+.|.||.+. |+.++| ||+|++|++++.|++||+||+.++.++-.+.. ..+++++.|+|+|.+|||+..| .-|
T Consensus 567 kvvR~f~gh~nr--itd~~F-S~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gI 642 (910)
T KOG1539|consen 567 KVVREFWGHGNR--ITDMTF-SPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGI 642 (910)
T ss_pred hhhHHhhccccc--eeeeEe-CCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceE
Confidence 778899999997 999999 99999999999999999999999999988763 5688999999999999999998 779
Q ss_pred EEecCCC
Q 009266 410 KILTPNA 416 (538)
Q Consensus 410 ~vw~~~~ 416 (538)
++|.-.+
T Consensus 643 ylWsNks 649 (910)
T KOG1539|consen 643 YLWSNKS 649 (910)
T ss_pred EEEEchh
Confidence 9997543
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.6e-29 Score=217.90 Aligned_cols=290 Identities=11% Similarity=0.164 Sum_probs=232.8
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCCCc-eEEEEeCCCcEEEeeccc
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILE 137 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~-~l~s~~~dg~v~vwd~~~ 137 (538)
.+.|++|.|+|....|++|+.|++++||.+.... .+..+ .-...+|.+.+|.| +|. .+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecC--CCceEEEecccceEEEEeeccc
Confidence 4789999999999999999999999999986332 22332 34567999999999 888 899999999999999998
Q ss_pred CceeeeeeccccC-CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 138 RGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 138 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
.+..+...+.++. ..+....++|++ ++|+..+..|.|.+....+++.+..++. .+.|..++|+.+ +
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~Ki-----------eG~v~~~~fsSd-s 356 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFKI-----------EGVVSDFTFSSD-S 356 (514)
T ss_pred cccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheeee-----------ccEEeeEEEecC-C
Confidence 8877665566665 357788899999 6899999999999999999999988884 447999999987 6
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-CeEEEeeccCCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGP 295 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~i~~~d~~~~~~~ 295 (538)
..|++++.+|.|.+||++.... ...+.....-.-++++.++++.+||+|++ |-|.||+..+....
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~--------------~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSC--------------LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred cEEEEEcCCceEEEEecCCcce--------------EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 8888888999999999998753 33333333445678889999999999995 57899997653211
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc--CCeEEEeecc
Q 009266 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD--CGRIFIWKKK 373 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~--dg~i~iwd~~ 373 (538)
. ..++++.+..-... |+++.| +|+.++||.+|. ...+|+-.+.
T Consensus 423 ~--------------------------------~PkPik~~dNLtt~--Itsl~F-n~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 423 T--------------------------------NPKPIKTVDNLTTA--ITSLQF-NHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred C--------------------------------CCCchhhhhhhhee--eeeeee-CcchhhhhhhhhccccceEEEecc
Confidence 1 13445555555544 999999 999999998875 4679999988
Q ss_pred CcceeEEeecCc---ceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 374 GGELIRVIEADR---HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 374 ~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
+......++... +.|+||+|||.+.+||.|...|.|.+|.+.
T Consensus 468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 877766665433 568999999999999999999999999874
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.9e-28 Score=228.90 Aligned_cols=286 Identities=13% Similarity=0.189 Sum_probs=222.5
Q ss_pred cCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc
Q 009266 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (538)
Q Consensus 58 ~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~ 136 (538)
.+|....+.|+|.|+|.+|+|++.+|.|++|+.... .....+ ..+...|.+++. .+.+|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~----~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIAC----YSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEee----cccceEEeeccceEEEeeCC
Confidence 469999999999999999999999999999997766 333333 337778888887 45699999999999999998
Q ss_pred cCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
++..-.. +...+-++++++|+-+| .+++.|+.|-.|++.++........++. +..+|.++.|+|. +
T Consensus 85 s~~~~~i--L~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrg----------h~apVl~l~~~p~-~ 150 (933)
T KOG1274|consen 85 SGEEDTI--LARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRG----------HDAPVLQLSYDPK-G 150 (933)
T ss_pred CCCccce--eeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecc----------cCCceeeeeEcCC-C
Confidence 8766433 56677889999999999 7899999999999999998887777765 4458999999997 7
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-CCEEEEEcCCeEEEeeccCCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGP 295 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~i~~~d~~~~~~~ 295 (538)
++||+.+.+|.|++|++..+.+......-.+. ........+..++|+|+ |++++.+.++.|++|+....
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-------n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w--- 220 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-------NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW--- 220 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCcc-------ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc---
Confidence 99999999999999999988764443221111 11111456788999998 56677777999999998873
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc
Q 009266 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
.....+........+..++| +|+|+|||+++.+|.|.|||+.+.
T Consensus 221 -----------------------------------e~~f~Lr~~~~ss~~~~~~w-sPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 221 -----------------------------------ELQFKLRDKLSSSKFSDLQW-SPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred -----------------------------------eeheeecccccccceEEEEE-cCCCcEEeeeccCCcEEEEecccc
Confidence 33444444333333778888 999999999999999999999873
Q ss_pred ceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
.. ......|.+++|.|+.+.|-....-|...+|
T Consensus 265 ~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 265 ER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred hh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 22 2223689999999999876555555555444
No 110
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-28 Score=201.20 Aligned_cols=273 Identities=15% Similarity=0.184 Sum_probs=214.5
Q ss_pred cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC--CCcEEEE
Q 009266 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE--DGLVQHF 178 (538)
Q Consensus 101 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iw 178 (538)
......|++|.|++ +|.+|++++.|-+|+||+..+++.+.+ +..+...|..++|.... +.++.++. |.+||..
T Consensus 11 ~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~t--i~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 11 RETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVKT--INSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceeeE--eecccccccEEEEecCC-ceEEEccCCCCCceEEE
Confidence 44577899999999 999999999999999999999988876 77777788888887766 45555555 7899999
Q ss_pred ecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccC
Q 009266 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (538)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
++.+.+.++.|..|.. .|++|+.+|- +..+++++.|++|++||+|..+..+...
T Consensus 86 sl~dNkylRYF~GH~~----------~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l~--------------- 139 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKK----------RVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLLN--------------- 139 (311)
T ss_pred EeecCceEEEcCCCCc----------eEEEEEecCC-CCeEEecccCCeEEeeEecCCCCceEEe---------------
Confidence 9999999999987543 8999999997 6899999999999999999765322211
Q ss_pred CCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee
Q 009266 259 DEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (538)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
...-..+||.|.|-++|++... .|++||++.-.. .+..++.
T Consensus 140 --~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk------------------------------------gPF~tf~ 181 (311)
T KOG1446|consen 140 --LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK------------------------------------GPFTTFS 181 (311)
T ss_pred --cCCCcceeECCCCcEEEEecCCCeEEEEEecccCC------------------------------------CCceeEc
Confidence 1233458999999999999866 999999986321 1112222
Q ss_pred cc-ccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcce---eeEEeecCCCCeEEEeecCCceEEec
Q 009266 338 GH-RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV---VNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 338 ~~-~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~---v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
-. ......+.+.| ||+|++|+.++..+.+++.|.-+|..+.++..+... ....+|+|+++++++|+.||+|.+|+
T Consensus 182 i~~~~~~ew~~l~F-S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 182 ITDNDEAEWTDLEF-SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred cCCCCccceeeeEE-cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 11 12223788998 999999999999999999999999999998877643 26778999999999999999999999
Q ss_pred CCCCcc-cccCc-cceeeeecc--cCc-eeeeccC
Q 009266 414 PNAADR-ATLPT-NIEQVLIPD--HIR-WFALGDD 443 (538)
Q Consensus 414 ~~~~~~-~~~~~-~~~~~~~~~--~~~-~l~s~~~ 443 (538)
+.++.. ..+.+ +...+..+. |.. ++++++.
T Consensus 261 ~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 261 LETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred cCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 998865 34444 566666666 555 5555544
No 111
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.4e-28 Score=233.01 Aligned_cols=215 Identities=14% Similarity=0.141 Sum_probs=159.4
Q ss_pred eeeEEcCCcCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCCce--------eeeeccCCCCCeEEEEEeecCCCce-EE
Q 009266 53 IYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERV--------KLSFHSGHNDNVFQAKIMPFTDDRS-IV 122 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~~~-l~ 122 (538)
.+..+.+|.+.|.+++|+|. +.+||||+.|++|+||++.++.. +.. +.+|...|.+++|+| ++.. |+
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~-L~gH~~~V~sVaf~P--~g~~iLa 142 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGHKKKISIIDWNP--MNYYIMC 142 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE-eecCCCcEEEEEECC--CCCeEEE
Confidence 45778999999999999996 78999999999999999976431 223 378999999999999 7765 57
Q ss_pred EEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcce
Q 009266 123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (538)
Q Consensus 123 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (538)
+++.|++|+|||+.++..+.. +. |...|.+++|+|+| .+|++++.|+.|+|||+++++.+..+..|... ..
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~--i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~-----~~ 213 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQ--IN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG-----KN 213 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEE--Ee-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecccCC-----ce
Confidence 899999999999998876543 33 56789999999999 68899999999999999999888777654321 01
Q ss_pred eeeeEEEEEcCCCCcEEEEEeCCC----eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEE
Q 009266 203 VVNLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (538)
Q Consensus 203 ~~~v~~~~~~~~~~~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 278 (538)
...+....|+++ +.+|++++.++ +|+|||++.... |+.. .....+...+......++|.++++
T Consensus 214 s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~--------pl~~----~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 214 TKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTS--------ALVT----MSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred eEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCC--------ceEE----EEecCCccceEEeeeCCCCCEEEE
Confidence 122344456787 56777777664 799999996421 1100 011112233344444566888888
Q ss_pred Ec-CCeEEEeeccCC
Q 009266 279 YN-DEFIYLFTQDMG 292 (538)
Q Consensus 279 ~~-~~~i~~~d~~~~ 292 (538)
|. ++.|++|++..+
T Consensus 281 GkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 281 GKGDGNCRYYQHSLG 295 (568)
T ss_pred EECCCeEEEEEccCC
Confidence 76 669999998753
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-27 Score=188.12 Aligned_cols=305 Identities=16% Similarity=0.216 Sum_probs=223.8
Q ss_pred CCCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC
Q 009266 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (538)
Q Consensus 2 ~~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~ 81 (538)
...-|+|.+.+-++|+...+++|-....-..++... - .+.. ...-+.+.-+.|.+.|.|.+|+|+|++||||+.
T Consensus 36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~h--e-a~~~---pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAH--E-AAKQ---PPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred eeEEecCCCceEEeccCCceEEEEccccccCccccc--c-cccC---CCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 345578999999999999999997665211111000 0 0000 001123455679999999999999999999999
Q ss_pred CCeEEEEECCCCce-----eeeeccCCCCCeEEEEEee--cCCCceEEEEeC-CCcEEEeecccCceeeeeeccccCCCc
Q 009266 82 DRRVILWDWKTERV-----KLSFHSGHNDNVFQAKIMP--FTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRA 153 (538)
Q Consensus 82 d~~i~iw~~~~~~~-----~~~~~~~~~~~v~~l~~~~--~~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~v 153 (538)
|.+|++..+....+ -..+ .-|.+.|..++|.. .+.+.+|++++. |..|++-|..+++.... +.+|++.|
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a--~sghtghi 186 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA--LSGHTGHI 186 (350)
T ss_pred CceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee--ecCCcccE
Confidence 99999986654332 1233 67999999999974 224567777664 66777777766666544 89999999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 009266 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 233 (538)
.++- +-++ .++++|+.|.+|++||++-..++..+..... .+-.....|.+++..|. |++|++|-.|....+||+
T Consensus 187 laly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~---~~glessavaav~vdps-grll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 187 LALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFH---DGGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDI 260 (350)
T ss_pred EEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCccc---CCCcccceeEEEEECCC-cceeeeccCCCceEEEEe
Confidence 8873 3334 6899999999999999998888776643211 11123457999999998 899999999999999999
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
+.++. .+....|...|+|+.|+|...+|++++ +..|++-|++....
T Consensus 261 rg~r~---------------iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla------------------ 307 (350)
T KOG0641|consen 261 RGGRM---------------IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA------------------ 307 (350)
T ss_pred eCCce---------------eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh------------------
Confidence 99863 233345788999999999999999999 45899999875321
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
...++.....|+.. +..+.| +|..--+++.+.|.++.+|-+.
T Consensus 308 ----------------~el~~~vv~ehkdk--~i~~rw-h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 308 ----------------HELPIMVVAEHKDK--AIQCRW-HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ----------------hcCceEEEEeccCc--eEEEEe-cCccceeeeccCcceEEEeccC
Confidence 12234555667776 778888 8988889999999999999763
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=7.7e-29 Score=215.87 Aligned_cols=259 Identities=18% Similarity=0.311 Sum_probs=202.1
Q ss_pred EeeeeeEEcCCcCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeee---------eccCCCCCeEEEEEeecCCCc
Q 009266 50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLS---------FHSGHNDNVFQAKIMPFTDDR 119 (538)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~~~~~~---------~~~~~~~~v~~l~~~~~~~~~ 119 (538)
.+++.+.+. |.+.|+.+++-|.. .+|||.+..+.|.||+..+...... .+.+|...-+.|+|++. ...
T Consensus 114 ~v~i~~~i~-h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~-~~g 191 (422)
T KOG0264|consen 114 KVEISQKIN-HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ-QEG 191 (422)
T ss_pred ceEEEEecc-CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc-cce
Confidence 344444444 99999999999965 5777788889999999864322111 34789988889999984 456
Q ss_pred eEEEEeCCCcEEEeecccCce-----eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC--Ceeeeeeec
Q 009266 120 SIVTCAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG--AATELFTCR 192 (538)
Q Consensus 120 ~l~s~~~dg~v~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~ 192 (538)
+|++++.+++|++|++..... .+...+.+|...|..++|++....+|++++.|+.+.|||+|++ ++......
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a- 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA- 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-
Confidence 899999999999999975433 3445688999999999999988889999999999999999963 22222221
Q ss_pred ccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC
Q 009266 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (538)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 272 (538)
|...|+|++|+|.++.+||+|+.|++|++||+|+.+.
T Consensus 271 ---------h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---------------------------------- 307 (422)
T KOG0264|consen 271 ---------HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---------------------------------- 307 (422)
T ss_pred ---------cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----------------------------------
Confidence 5668999999999999999999999999999998641
Q ss_pred CCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEec
Q 009266 273 SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (538)
Q Consensus 273 ~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s 352 (538)
++.++.+|... |.+|.| |
T Consensus 308 -----------------------------------------------------------~lh~~e~H~de--v~~V~W-S 325 (422)
T KOG0264|consen 308 -----------------------------------------------------------PLHTFEGHEDE--VFQVEW-S 325 (422)
T ss_pred -----------------------------------------------------------CceeccCCCcc--eEEEEe-C
Confidence 23455666665 777777 6
Q ss_pred CCC-cEEEEeccCCeEEEeeccCc--------------ceeEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCC
Q 009266 353 PKC-EYVVSGSDCGRIFIWKKKGG--------------ELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNA 416 (538)
Q Consensus 353 ~~~-~~l~~gs~dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~ 416 (538)
|.. ..||+++.|+++.|||+..- +++..-.||...|..+.|+|+.+ .|+|.+.|+.+.||.+..
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 654 46777888888888887432 23445568999999999999988 678999999999999874
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-29 Score=199.75 Aligned_cols=248 Identities=19% Similarity=0.197 Sum_probs=193.9
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC--CCCEEEEecCCC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDR 83 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~t~~~d~ 83 (538)
-.-.+++|||++.|++|||+.+...... +++..|+||.++|+.++|.. -|.+||+++.||
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s------------------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQS------------------KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCc------------------eeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 3446899999999999999999865432 34788999999999999976 799999999999
Q ss_pred eEEEEECCCCceeee-eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccC-ceeeeeeccccCCCcEEEEEcCC
Q 009266 84 RVILWDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-GGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
.|.||.-.+|+-... ....|...|++|+|.|..-|-.|++++.||.|.|..+... .....+....|.-.|++++|.|.
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 999999887753221 1267999999999999777889999999999999998866 44444557789999999999986
Q ss_pred ---C----------CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCC---CcEEEEEeCC
Q 009266 162 ---S----------PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN---ANLFAVAGSD 225 (538)
Q Consensus 162 ---~----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d 225 (538)
| .+.|++|+-|..|+||....++-...-. +.+ |...|+.++|.|.. ...||+++.|
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~------l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT------LEG--HKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh------hhh--cchhhhhhhhccccCCCceeeEEecCC
Confidence 2 1459999999999999998873222111 122 55589999999963 2579999999
Q ss_pred CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccC
Q 009266 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (538)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (538)
|+|.||..+..... -..+++......+..+.||+.|.+|++++ ++.|.+|.-..
T Consensus 233 g~viIwt~~~e~e~------------wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEP------------WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CcEEEEEecCccCc------------ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99999998732110 01222233456799999999999998877 56899997543
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=2.3e-29 Score=221.26 Aligned_cols=288 Identities=16% Similarity=0.215 Sum_probs=235.2
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeec-cCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~---~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
+.+++| .|..-|.++.+|...+++.||+. |.|+||++.... ++..+- ......|.++..+| +|+.|++|+.-
T Consensus 411 rq~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGea 486 (705)
T KOG0639|consen 411 RQINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEA 486 (705)
T ss_pred Hhhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEecccc
Confidence 444455 49999999999999999999987 679999986432 222221 12345789999999 99999999999
Q ss_pred CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
.++.|||+..........+....-.+.+++.+|+. ++.+++..||.|.|||++....+..|+.+.. .+.
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtD----------Gas 555 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD----------GAS 555 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCC----------Cce
Confidence 99999999887665544455555678889999999 7889999999999999999999888886543 789
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-CeEEE
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYL 286 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~i~~ 286 (538)
||.++++ |..|.+|+-|.+||.||++.++...... ....|.++..+|++.+|++|-. +.+.|
T Consensus 556 cIdis~d-GtklWTGGlDntvRcWDlregrqlqqhd----------------F~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 556 CIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQHD----------------FSSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred eEEecCC-CceeecCCCccceeehhhhhhhhhhhhh----------------hhhhheecccCCCccceeeecccCcEEE
Confidence 9999998 7999999999999999999987543322 2568999999999999999985 47877
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCe
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~ 366 (538)
..... .....+.-|... |.++.| .+.|+++++.+.|+-
T Consensus 619 lh~sk---------------------------------------p~kyqlhlheSc--VLSlKF-a~cGkwfvStGkDnl 656 (705)
T KOG0639|consen 619 LHTSK---------------------------------------PEKYQLHLHESC--VLSLKF-AYCGKWFVSTGKDNL 656 (705)
T ss_pred EecCC---------------------------------------ccceeecccccE--EEEEEe-cccCceeeecCchhh
Confidence 77553 233445556665 999999 999999999999999
Q ss_pred EEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
+..|.+.-|..+...+ ....|.++.+|.+.++|+||+.|....||.+
T Consensus 657 LnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 657 LNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999998888877766 3568999999999999999999988888764
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=6.4e-29 Score=238.98 Aligned_cols=293 Identities=16% Similarity=0.199 Sum_probs=219.1
Q ss_pred CCCCCceEEeec--cCCceEEeeeccCceeccccchhhcccccceE-EeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 6 NNNNNKRARTSV--DKALVDVWLRELGQLSTRNFALRRRASEDLVL-RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 6 ~~~~~~~l~t~~--~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
-+|++.+++||+ .|+.++||+... ++.. ..+... --+.+.++..|.+.|+|+.|+|+|++||+||.|
T Consensus 21 v~pdg~~~aTgGq~~d~~~~iW~~~~--vl~~--------~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 21 VHPDGVKFATGGQVLDGGIVIWSQDP--VLDE--------KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred ecCCceeEecCCccccccceeecccc--ccch--------hhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 368999999999 999999999872 1111 011111 125567788999999999999999999999999
Q ss_pred CeEEEEECCC----------C--------ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee
Q 009266 83 RRVILWDWKT----------E--------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (538)
Q Consensus 83 ~~i~iw~~~~----------~--------~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 144 (538)
+.|.||.... | +++. .+.+|...|..++|+| ++.+||+++.|++|.||+..+.+.+..
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~-~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~v- 166 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVS-ILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKV- 166 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEE-EEecCCCccceeccCC--CccEEEEecccceEEEEccccceeeee-
Confidence 9999998762 0 1223 3489999999999999 999999999999999999999866655
Q ss_pred eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC
Q 009266 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 224 (538)
+.+|...|..+.|.|-| ++|++-+.|++|+||.+..-...+.+..+-.. ......+..+.|+|+ |.+|++...
T Consensus 167 -l~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~----~~~~T~f~RlSWSPD-G~~las~nA 239 (942)
T KOG0973|consen 167 -LRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEE----SPLTTFFLRLSWSPD-GHHLASPNA 239 (942)
T ss_pred -eecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhh----CCCcceeeecccCCC-cCeecchhh
Confidence 99999999999999999 79999999999999997765555554432210 113346889999998 788887642
Q ss_pred ----CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-----CC------------EEEEEc-CC
Q 009266 225 ----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-----SE------------LLVSYN-DE 282 (538)
Q Consensus 225 ----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~-~~ 282 (538)
-..+.|.+-.+-+ .-..+-+|..++.+++|+|. .+ .+|+|+ ++
T Consensus 240 ~n~~~~~~~IieR~tWk---------------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWK---------------VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred ccCCcceeEEEecCCce---------------eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 2245565543332 12234457789999999982 11 456666 56
Q ss_pred eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec
Q 009266 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (538)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs 362 (538)
.|.||.....+++.. .+.+..+ .|..++| +|+|..|+++|
T Consensus 305 SlSVW~T~~~RPl~v-----------------------------------i~~lf~~----SI~DmsW-spdG~~LfacS 344 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFV-----------------------------------IHNLFNK----SIVDMSW-SPDGFSLFACS 344 (942)
T ss_pred cEEEEecCCCCchhh-----------------------------------hhhhhcC----ceeeeeE-cCCCCeEEEEe
Confidence 899999865322111 1122222 3999999 99999999999
Q ss_pred cCCeEEEeeccC
Q 009266 363 DCGRIFIWKKKG 374 (538)
Q Consensus 363 ~dg~i~iwd~~~ 374 (538)
.||+|.++.+..
T Consensus 345 ~DGtV~~i~Fee 356 (942)
T KOG0973|consen 345 LDGTVALIHFEE 356 (942)
T ss_pred cCCeEEEEEcch
Confidence 999999999854
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.4e-27 Score=213.13 Aligned_cols=399 Identities=12% Similarity=0.125 Sum_probs=272.6
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc-CcEEEEEEcCCCCEEEEecCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~t~~~d 82 (538)
||.+ ..+.||.+-.+|.|-||++..+-+. ...+.++. ..|.+|+|++ +..|.+.+.+
T Consensus 32 A~s~-kS~~lAvsRt~g~IEiwN~~~~w~~--------------------~~vi~g~~drsIE~L~W~e-~~RLFS~g~s 89 (691)
T KOG2048|consen 32 AYSH-KSNQLAVSRTDGNIEIWNLSNNWFL--------------------EPVIHGPEDRSIESLAWAE-GGRLFSSGLS 89 (691)
T ss_pred EEec-cCCceeeeccCCcEEEEccCCCcee--------------------eEEEecCCCCceeeEEEcc-CCeEEeecCC
Confidence 4444 4456999999999999999966554 44566664 6899999995 5568888889
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
|.|.-||+.+++.+..+ ....+.|++++.+| .+..++.|+.+|.+..++...+.......+...+++|.++.|+|++
T Consensus 90 g~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYNI-DSNGGAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred ceEEEEecccCceeEEe-cCCCcceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence 99999999999998887 67888999999999 8999999999998888888887777777788888999999999999
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
..|++|+.||.|++||+.++..+......-....++ ...-|+++.|-.+ ..|++|..-|+|++||...+.+..
T Consensus 167 -~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~--~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiq-- 239 (691)
T KOG2048|consen 167 -TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR--EPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQ-- 239 (691)
T ss_pred -cEEEecccCceEEEEEcCCCceEEEeeecccccccC--CceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhh--
Confidence 678999999999999999998776332221111111 3345888888864 689999999999999999887533
Q ss_pred CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCC----CCCCCccccccc--cc----
Q 009266 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP----PPSSPVSTRSEA--SE---- 311 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~--~~---- 311 (538)
....|...|.+++..+++.++.+++ ++.|..|...+...... ...++...+..+ ..
T Consensus 240 -------------S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~s 306 (691)
T KOG2048|consen 240 -------------SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALIS 306 (691)
T ss_pred -------------hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEe
Confidence 3344678999999999987777766 77888887776643111 111111111000 00
Q ss_pred --------c-------------------------CCCCccccCC--------CCCCC-----CcccCCce--eeccccce
Q 009266 312 --------M-------------------------GSDHTSAASP--------STANT-----DVRIAPQV--YKGHRNCV 343 (538)
Q Consensus 312 --------~-------------------------~~~~~~~~~~--------~~~~~-----~~~~~~~~--~~~~~~~~ 343 (538)
+ .+..+.+... ..+.. .....+.. ++.+.
T Consensus 307 gG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~--- 383 (691)
T KOG2048|consen 307 GGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKE--- 383 (691)
T ss_pred cceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcc---
Confidence 0 0000000000 00000 00011111 11222
Q ss_pred eeeEEEEecCCCcEEEEeccCCeEEEeeccC-------------------------------------------------
Q 009266 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG------------------------------------------------- 374 (538)
Q Consensus 344 ~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~------------------------------------------------- 374 (538)
.|.+.+. ||+|++|+.+.- ..++||.++.
T Consensus 384 nIs~~ai-SPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~p 461 (691)
T KOG2048|consen 384 NISCAAI-SPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETP 461 (691)
T ss_pred ceeeecc-CCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCc
Confidence 2777777 999999998762 2334443321
Q ss_pred -cceeEEe--ecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccC-ccceeeeecc----cCceeeeccCCCC
Q 009266 375 -GELIRVI--EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-TNIEQVLIPD----HIRWFALGDDDDG 446 (538)
Q Consensus 375 -~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~~~~~----~~~~l~s~~~d~~ 446 (538)
++.+..+ ++....|..++.||+|++||+.+..|.|.+|++.+.+...+. .-...++.+. ..+.|+.+.+++.
T Consensus 462 s~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQ 541 (691)
T KOG2048|consen 462 SFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQ 541 (691)
T ss_pred chhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCe
Confidence 0000000 012356899999999999999999999999999998776555 2223343333 3338888888888
Q ss_pred Cceeec
Q 009266 447 DYYFYD 452 (538)
Q Consensus 447 ~~~~~~ 452 (538)
.|.|.-
T Consensus 542 v~efdi 547 (691)
T KOG2048|consen 542 VFEFDI 547 (691)
T ss_pred EEEEec
Confidence 887743
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.9e-29 Score=205.64 Aligned_cols=276 Identities=17% Similarity=0.258 Sum_probs=221.5
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
..+.+.+++.|.+.+||.+++|.++ .++.||.+.|+||.|++.+.+++|++.|++-+||
T Consensus 159 tqpi~gtASADhTA~iWs~Esg~CL---------------------~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLESGACL---------------------ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred CCcceeecccccceeEEeeccccce---------------------eeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 3458899999999999999999996 5689999999999999999999999999999999
Q ss_pred EC------CC------------------------------C----ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 89 DW------KT------------------------------E----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 89 ~~------~~------------------------------~----~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
.. .. + .++.. +.+|.+.|.+..|.. .|+.+++++.|.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~--gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLA--GGQQMVTASWDR 294 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-eeccccceEehhhhc--Ccceeeeeeccc
Confidence 72 11 0 01233 378999999999998 999999999999
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC-CeeeeeeecccCCCCCcceeeeeE
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
+..+||++++..+.. +.+|....+.++-+|.. +++++++.|.+.++||++.. ..+..|+. |...|+
T Consensus 295 TAnlwDVEtge~v~~--LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQG----------HtdtVT 361 (481)
T KOG0300|consen 295 TANLWDVETGEVVNI--LTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQG----------HTDTVT 361 (481)
T ss_pred cceeeeeccCceecc--ccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecc----------ccccee
Confidence 999999999988866 99999999999999988 79999999999999999843 22334443 444799
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEE
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYL 286 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~ 286 (538)
++.|.-+ ..+++|+.|.+|++|++++.+. +...+. ...+++.++.+..+..|+.-.++ .|++
T Consensus 362 S~vF~~d--d~vVSgSDDrTvKvWdLrNMRs--------------plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRl 424 (481)
T KOG0300|consen 362 SVVFNTD--DRVVSGSDDRTVKVWDLRNMRS--------------PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRL 424 (481)
T ss_pred EEEEecC--CceeecCCCceEEEeeeccccC--------------cceeee-cCCccceeEeecCCceEEeccCCceEEE
Confidence 9999985 6899999999999999998752 122221 25678999999988899998877 8999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC--cEEEEeccC
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--EYVVSGSDC 364 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~--~~l~~gs~d 364 (538)
||+...... +.+...-++|... |.+++| ...- .-|++++.|
T Consensus 425 fDlnG~Rla----------------------------------RlPrtsRqgHrRM--V~c~AW-~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 425 FDLNGNRLA----------------------------------RLPRTSRQGHRRM--VTCCAW-LEEHPACNLFTCGFD 467 (481)
T ss_pred EecCCCccc----------------------------------cCCccccccccee--eeeeec-cccCccccccccccc
Confidence 999864221 1122345677765 888888 4322 357788889
Q ss_pred CeEEEeeccCc
Q 009266 365 GRIFIWKKKGG 375 (538)
Q Consensus 365 g~i~iwd~~~~ 375 (538)
..+.-|++...
T Consensus 468 R~v~gW~in~p 478 (481)
T KOG0300|consen 468 RMVAGWKINTP 478 (481)
T ss_pred ceeeeeEeccc
Confidence 99999998654
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.9e-28 Score=201.60 Aligned_cols=305 Identities=16% Similarity=0.208 Sum_probs=217.4
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-----eeeeeccCCCCCeEEEEEeecCCCceEE-EEeCC
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-----VKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAAD 127 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~~l~-s~~~d 127 (538)
+..|++|.+.|++++|+.+|++|||++.|++|+||++..-. +++.- -.-+..+.++|.| +-+-++ ++-..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~Fap--Dc~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAP--DCKSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECC--CcceEEEEEccC
Confidence 45789999999999999999999999999999999987532 12211 1223567889999 766554 55556
Q ss_pred CcEEEeecccCce---eee-------eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCC
Q 009266 128 GQVRHAQILERGG---VET-------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (538)
Q Consensus 128 g~v~vwd~~~~~~---~~~-------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (538)
.++++|.+...+. ... .....|.-.|..+-....+ .+|++++.|..|.+|+++ |+.+..+...+.
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--- 229 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQS--- 229 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccccc---
Confidence 7899998754321 100 0122355566666666666 799999999999999999 887777664433
Q ss_pred CCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEE
Q 009266 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (538)
Q Consensus 198 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 277 (538)
.-+-.+.+|+ |++|++++---.|++|.+--.+- ..++.......+.+|...|..++|+|+.+.++
T Consensus 230 -------~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kd-------G~fqev~rvf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 230 -------SNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKD-------GTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred -------cccceeeCCC-CcEEEEecCCCCceEEEEEeccC-------cchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence 3566789997 89999999989999999764431 11111122344567899999999999999999
Q ss_pred EEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCcee--eccccceeeeEEEEecCC
Q 009266 278 SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY--KGHRNCVTVKGVNFFGPK 354 (538)
Q Consensus 278 ~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~v~~~s~~ 354 (538)
+.+ +|+++|||+.-.....+-+ ..++.. .-|.....-..+.. +|+
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDp-------------------------------k~Lk~g~~pl~aag~~p~RL~l-sP~ 342 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDP-------------------------------KILKEGSAPLHAAGSEPVRLEL-SPS 342 (420)
T ss_pred EEecCCcEEEeeccceEecCCCc-------------------------------hHhhcCCcchhhcCCCceEEEe-CCC
Confidence 998 7799999986532211100 011111 11111111347787 999
Q ss_pred CcEEEEeccCCeEEEeeccCcceeEEee-cCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 355 CEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 355 ~~~l~~gs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
|+.||... ...|++|..++|+....++ .|...|.+++|+++|+++||++ |..++|+.-..
T Consensus 343 g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 343 GDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTP 403 (420)
T ss_pred CcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCC
Confidence 99888765 4679999999998877664 6889999999999999999997 67888876433
No 120
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-29 Score=226.90 Aligned_cols=296 Identities=18% Similarity=0.242 Sum_probs=232.2
Q ss_pred CCcCcEE---EEEEcC-CCCEEEEecCCCeEEEEECCCCce------eeeeccCCCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 59 KHRGCVN---TVSFNT-DGDILISGSDDRRVILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 59 ~h~~~v~---~~~~s~-~g~~l~t~~~d~~i~iw~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
.|...|. .+..++ .+++|+|||.||.|++|++..... +.++ ..|...|+.++..- +++.|++++.|-
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~--~~~tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCG--NGKTLISASSDT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhc--CCCceEEecCCc
Confidence 3455555 455554 677899999999999999864332 3444 68999999999988 899999999999
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEE-cCCCCcEEEEEcCCCcEEEEecCCCC--eeeeeeecccCCCCCcceeee
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAI-EPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~ 205 (538)
+|++|+..........++..|...|.|+++ .++. .++|+||-|+.|.+||+.++. .+..+......... ..+..+
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~-sG~k~s 173 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG-SGPKDS 173 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCC-CCCccc
Confidence 999999987754444558999999999999 5555 799999999999999999883 33333322222222 125558
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeE
Q 009266 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (538)
|++++.++. +..|++|+..+.|++||.++.+. ...+.+|...|+.+..+++|+.+++++ +++|
T Consensus 174 iYSLA~N~t-~t~ivsGgtek~lr~wDprt~~k---------------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI 237 (735)
T KOG0308|consen 174 IYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKK---------------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI 237 (735)
T ss_pred eeeeecCCc-ceEEEecCcccceEEeccccccc---------------eeeeeccccceEEEEEcCCCCeEeecCCCceE
Confidence 999999997 78999999999999999999763 233347899999999999999988887 7799
Q ss_pred EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC
Q 009266 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
++|++.. ..++.++..|... |+++.. +|+-.++++|+.+
T Consensus 238 rlWdLgq--------------------------------------QrCl~T~~vH~e~--VWaL~~-~~sf~~vYsG~rd 276 (735)
T KOG0308|consen 238 RLWDLGQ--------------------------------------QRCLATYIVHKEG--VWALQS-SPSFTHVYSGGRD 276 (735)
T ss_pred Eeeeccc--------------------------------------cceeeeEEeccCc--eEEEee-CCCcceEEecCCC
Confidence 9999987 6678889999987 999998 9999999999999
Q ss_pred CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
|.|+.=++.+......+-....+|..+..+...+-+-++..|+.|+-|....
T Consensus 277 ~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 277 GNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred CcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 9999999988433322222445777777776555556777889999997653
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=8.8e-28 Score=197.39 Aligned_cols=309 Identities=16% Similarity=0.210 Sum_probs=227.4
Q ss_pred EEcCCcCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCCc------------ee--eeeccCCCCCeEEEEEeecCCCce
Q 009266 56 KLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTER------------VK--LSFHSGHNDNVFQAKIMPFTDDRS 120 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~-~g~~l~t~~~d~~i~iw~~~~~~------------~~--~~~~~~~~~~v~~l~~~~~~~~~~ 120 (538)
..+.|.+.|+++...+ .|+|+++|+.||.|.+||++.-. ++ ..-..+|+-.|..+.|-|. +..+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtGm 116 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTGM 116 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCce
Confidence 3467999999999998 68999999999999999997532 10 1112568889999999996 6778
Q ss_pred EEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC--CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCC
Q 009266 121 IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS--PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR 198 (538)
Q Consensus 121 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 198 (538)
+.+++.|.+++|||..+.+...... ..+.|.+-+++|-. ..++++|..+-.|++-|+.+|.....+..|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~---me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr----- 188 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK---MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR----- 188 (397)
T ss_pred eecccccceEEEeecccceeeEEee---cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc-----
Confidence 9999999999999998877665432 44667888888743 2578888888999999999999998888654
Q ss_pred CcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcc-ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEE
Q 009266 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (538)
Q Consensus 199 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 277 (538)
..|.++.|+|.....|++|+.||.|++||++... .......... ...........|.+.+.+++|+.++.+++
T Consensus 189 -----~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 189 -----DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred -----CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-ccCccccccccccceeeeeeecccchhhh
Confidence 3799999999988899999999999999998651 1100000000 00111223456789999999999999998
Q ss_pred EEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc
Q 009266 278 SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (538)
Q Consensus 278 ~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~ 356 (538)
+++ ++++++|+...+.....-. .+..+.-+.+.. ..+.+ -+..
T Consensus 263 ~~gtd~r~r~wn~~~G~ntl~~~------------------------------g~~~~n~~~~~~-~~~~~-----~~s~ 306 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRNTLREF------------------------------GPIIHNQTTSFA-VHIQS-----MDSD 306 (397)
T ss_pred hccCccceEEeecccCccccccc------------------------------ccccccccccce-EEEee-----cccc
Confidence 877 7799999998764321100 001111111111 01211 1122
Q ss_pred EEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 357 ~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
.++---.++.+.++++-.+..++.+..|-..|.+.++-|+-+.+.++..|+.|..|-+.
T Consensus 307 vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 307 VFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 23333345889999999999999999999999999999999999999999999999883
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=214.84 Aligned_cols=261 Identities=18% Similarity=0.271 Sum_probs=207.9
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc---
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE--- 137 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~--- 137 (538)
.++|.|++-+|.|.+|+.|+..|.|++|.+.+|..+..+ .+|-..|+|+.|+- |+.+|+||+.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeC--CCcEEEecCCCccEEEEEEEeecc
Confidence 578999999999999999989999999999999998777 89999999999999 999999999999999998742
Q ss_pred ----CceeeeeeccccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 138 ----RGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 138 ----~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
....+...+..|+-+|+.+...+.+ ...|+|++.|.++++|++..+..+..+.. +..+.+++.+
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-----------p~si~av~lD 226 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-----------PSSIKAVALD 226 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-----------CCcceeEEEc
Confidence 2334445688999999999988753 35799999999999999999998888773 4479999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCC
Q 009266 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (538)
|- ++.+++|+.+|.|.+.++.+..- ....+..=.+++.
T Consensus 227 pa-e~~~yiGt~~G~I~~~~~~~~~~---------------------~~~~v~~k~~~~~-------------------- 264 (476)
T KOG0646|consen 227 PA-ERVVYIGTEEGKIFQNLLFKLSG---------------------QSAGVNQKGRHEE-------------------- 264 (476)
T ss_pred cc-ccEEEecCCcceEEeeehhcCCc---------------------ccccccccccccc--------------------
Confidence 97 79999999999999888765320 0011111111111
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
....+.+.||.+...|+++++ +-+|.+|++|+.||+|.|||+
T Consensus 265 -------------------------------------~t~~~~~~Gh~~~~~ITcLai-s~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 265 -------------------------------------NTQINVLVGHENESAITCLAI-STDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -------------------------------------cceeeeeccccCCcceeEEEE-ecCccEEEeeCCCCCEEEEec
Confidence 234566778888556999998 999999999999999999999
Q ss_pred cCcceeEEeecCcceeeEEeecCCCCeEEE-eecCCceEEecCC
Q 009266 373 KGGELIRVIEADRHVVNCIEPHPHSTVLAS-SGIESDIKILTPN 415 (538)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~dg~v~vw~~~ 415 (538)
.+.++++++....++|+.+.+.|-.+-.+. -.....+-+|.+.
T Consensus 307 ~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 307 YSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred chHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 999999999867789999999776553333 2233344444443
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=197.78 Aligned_cols=276 Identities=17% Similarity=0.191 Sum_probs=205.3
Q ss_pred CCCCCCCCceEEeeccCCceEEeeecc-CceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~ 81 (538)
++|.|....++++|+-|++||+|+++. |... -+....|.++|.+++|+.+|..+++|+.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--------------------~ka~~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--------------------PKAQQSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCccc--------------------chhhhccCCCeEEEEEccCCceEEeecc
Confidence 567776778888999999999999996 4443 1456679999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCC
Q 009266 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
|+.+++||+.+++. .++ ..|.++|..+.|-+...-..|+||+.|.+|+.||++....+....+ ..++.++..-.
T Consensus 93 Dk~~k~wDL~S~Q~-~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L---PeRvYa~Dv~~- 166 (347)
T KOG0647|consen 93 DKQAKLWDLASGQV-SQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL---PERVYAADVLY- 166 (347)
T ss_pred CCceEEEEccCCCe-eee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec---cceeeehhccC-
Confidence 99999999999965 445 6899999999999832334899999999999999998777665433 35566665543
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
-+++.+..++.|.+|+|+.+.........+ ..-.++||+..++ ....+.|+-.|.+-|..+..+.....
T Consensus 167 --pm~vVata~r~i~vynL~n~~te~k~~~Sp--------Lk~Q~R~va~f~d-~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 167 --PMAVVATAERHIAVYNLENPPTEFKRIESP--------LKWQTRCVACFQD-KDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred --ceeEEEecCCcEEEEEcCCCcchhhhhcCc--------ccceeeEEEEEec-CCceEeeeecceEEEEecCCCCccCc
Confidence 367888889999999998764332211111 2236889999887 56669999999999999887532111
Q ss_pred CCCCCCCcccCCCCc--cCCCccceEEEEEcCCCCEEEE-EcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcc
Q 009266 242 TDFGQPADYFCPPNL--IGDEQVGITGLAFSDQSELLVS-YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
+ ...|-+.. ....-..|++++|+|.-..|++ |++|++.+||...
T Consensus 236 F------tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda--------------------------- 282 (347)
T KOG0647|consen 236 F------TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA--------------------------- 282 (347)
T ss_pred e------eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh---------------------------
Confidence 1 11122211 1112457899999997555555 5588999999876
Q ss_pred ccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec
Q 009266 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs 362 (538)
+..++....|..+ |+++.| +.+|.++|-+.
T Consensus 283 -----------r~kLk~s~~~~qp--Itcc~f-n~~G~ifaYA~ 312 (347)
T KOG0647|consen 283 -----------RTKLKTSETHPQP--ITCCSF-NRNGSIFAYAL 312 (347)
T ss_pred -----------hhhhhccCcCCCc--cceeEe-cCCCCEEEEEe
Confidence 4455666667776 899998 99999887653
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-28 Score=196.08 Aligned_cols=258 Identities=14% Similarity=0.246 Sum_probs=202.1
Q ss_pred eEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
.....|...|..+...--|++|||++.|++|||+.+.... .+...+.+|.++|+.++|....-|.+||+++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 3456799999999988889999999999999999987654 23333489999999999965346899999999999999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEEecCCCCe---eeeeeecccCCCCCcceeeeeEE
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
|.-.+++..+......|...|++++|.|.+ ..+|++++.||.|.|...+.... .....+ |...|++
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a----------H~~Gvns 154 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA----------HEIGVNS 154 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc----------cccccce
Confidence 999988777767788899999999999865 25789999999999999876521 122222 4457999
Q ss_pred EEEcCC---C----------CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC--
Q 009266 209 IAIDPR---N----------ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-- 273 (538)
Q Consensus 209 ~~~~~~---~----------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-- 273 (538)
++|.|. + -+.|++|+.|..|+||.....+.. ....+..|...|+.++|.|.-
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-------------~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-------------LERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh-------------hhhhhhhcchhhhhhhhccccCC
Confidence 999985 1 156999999999999999886432 234466789999999999963
Q ss_pred --CEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE
Q 009266 274 --ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 274 --~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
..||+++ ++++.||......... ....+..... .++.+.|
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~w-----------------------------------k~tll~~f~~--~~w~vSW 264 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPW-----------------------------------KKTLLEEFPD--VVWRVSW 264 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCcc-----------------------------------cccccccCCc--ceEEEEE
Confidence 4788888 6699999877421111 1122222233 3899999
Q ss_pred ecCCCcEEEEeccCCeEEEeecc
Q 009266 351 FGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 351 ~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
|+.|++|++++.|+.|.+|.-.
T Consensus 265 -S~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 265 -SLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -eccccEEEEecCCcEEEEEEeC
Confidence 9999999999999999999853
No 125
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.5e-28 Score=206.29 Aligned_cols=310 Identities=20% Similarity=0.245 Sum_probs=231.7
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECC------CCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK------TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~------~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~ 126 (538)
+.+.+.+|.++|++|.|+.++++||+|+.|..++||++. +.+++...-..|...|.|++|.. ...+|++|..
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~ 125 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGER 125 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCC
Confidence 446678999999999999999999999999999999975 33454444456789999999998 8899999999
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (538)
+++|.+.++.+.+.+....-....+.|..+..+|.. ++|++.+.++.|.+||.+.......+.+... .....
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-------~~~~F 197 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-------SGKNF 197 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecC-------CCccc
Confidence 999999999998877653333444589999999997 7999999999999999997763333333222 23367
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEE
Q 009266 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIY 285 (538)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~ 285 (538)
.++.|+|....+|++.+..+-+-+||.+..+. |+..+.....+......-.++.|+|+|..|.+...+ .-.
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~--------~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQAR--------PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccc--------hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence 88999998889999999999999999987541 111111111111223344678899999988887765 566
Q ss_pred EeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCC
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg 365 (538)
+||+....++.. +.-+...|..+..++.+++| .+...+++|+.+-
T Consensus 270 ~~D~~S~R~~V~---------------------------------k~D~N~~GY~N~~T~KS~~F--~~D~~v~tGSD~~ 314 (609)
T KOG4227|consen 270 YFDFISQRCFVL---------------------------------KSDHNPNGYCNIKTIKSMTF--IDDYTVATGSDHW 314 (609)
T ss_pred EeeeecccceeE---------------------------------eccCCCCcceeeeeeeeeee--ecceeeeccCccc
Confidence 777765322111 00001112233445888888 3445699999999
Q ss_pred eEEEeeccCc-----------------------ceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 366 RIFIWKKKGG-----------------------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 366 ~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
.|++|.+... +.+..|++|...++.+.|+|...+|++.+-.+.++||..-
T Consensus 315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 9999998421 2345788999999999999999999999999999999864
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=216.74 Aligned_cols=308 Identities=21% Similarity=0.286 Sum_probs=220.3
Q ss_pred EEEEcC---CCCEEEEecCCCeEEEEECCCCcee-----eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 66 TVSFNT---DGDILISGSDDRRVILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 66 ~~~~s~---~g~~l~t~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
++.|++ ...+|+.+..+|.|.+++....... ......|...|..+.|.| ....|++++.|.++++|++.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCceeeeeeecc
Confidence 366765 3468999999999999997653321 233368999999999999 888999999999999999999
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeee-------e---eee--cc-----cCCCCCc
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-------L---FTC--RP-----IDDRRNY 200 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~---~~~--~~-----~~~~~~~ 200 (538)
.+......+.+|...|.+++|.|..+..|++|+.||.|.|||++....-. . ... .+ .......
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 98887777889999999999999999999999999999999998544100 0 000 00 0000111
Q ss_pred ce----eeeeEEEEEcCCCCcEEEEEeC-CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCE
Q 009266 201 MT----VVNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (538)
Q Consensus 201 ~~----~~~v~~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 275 (538)
.+ ...|+.+.|- + ...||+++. |+.|++||+++....... .|......... ......+.++.....|.+
T Consensus 212 A~s~ti~ssvTvv~fk-D-e~tlaSaga~D~~iKVWDLRk~~~~~r~---ep~~~~~~~t~-skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFK-D-ESTLASAGAADSTIKVWDLRKNYTAYRQ---EPRGSDKYPTH-SKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccCceeeeeEEEEEe-c-cceeeeccCCCcceEEEeeccccccccc---CCCcccCccCc-ccceeeeEEEEecCCCCe
Confidence 12 2235555554 4 578888887 999999999987543221 11111111111 122456788888887765
Q ss_pred -EEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCC
Q 009266 276 -LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (538)
Q Consensus 276 -l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~ 354 (538)
+|+|.++.|++|++.+-. ..+...+.++........-.. +|+
T Consensus 286 L~AsCtD~sIy~ynm~s~s------------------------------------~sP~~~~sg~~~~sf~vks~l-Spd 328 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLS------------------------------------ISPVAEFSGKLNSSFYVKSEL-SPD 328 (720)
T ss_pred EEEEecCCcEEEEeccccC------------------------------------cCchhhccCcccceeeeeeec-CCC
Confidence 566778999999997632 223344555544322222233 899
Q ss_pred CcEEEEeccCCeEEEeeccCcc-eeEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCCCc
Q 009266 355 CEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 355 ~~~l~~gs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~~ 418 (538)
+.+|++|+.+...++|.+.+.+ ....+.+|.-.|++++|.|..- -+|+|+.|..++||++..+.
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 9999999999999999998765 4566789999999999988643 57888999999999997653
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=4e-26 Score=210.79 Aligned_cols=292 Identities=12% Similarity=0.128 Sum_probs=207.1
Q ss_pred ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEE-EEecCCCeEEEEE
Q 009266 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWD 89 (538)
Q Consensus 11 ~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~t~~~d~~i~iw~ 89 (538)
.++++++.++.|++|++.+++.+ +.+..|. .+.+++|+|+++.| ++++.++.|++|+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~---------------------~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d 59 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT---------------------RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVID 59 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE---------------------EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEE
Confidence 57889999999999999988764 3455444 36789999999876 5677889999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE-eCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (538)
+.+++.+..+ ..+. .+..++|+| +++.++++ +.++.|++|++.+.+.+.. +. +...+.+++|+|++ .++++
T Consensus 60 ~~~~~~~~~~-~~~~-~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~--~~-~~~~~~~~~~~~dg-~~l~~ 131 (300)
T TIGR03866 60 LATGEVIGTL-PSGP-DPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAE--IP-VGVEPEGMAVSPDG-KIVVN 131 (300)
T ss_pred CCCCcEEEec-cCCC-CccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeE--ee-CCCCcceEEECCCC-CEEEE
Confidence 9998876665 3333 356789999 88877655 5689999999988665543 32 23346889999999 57777
Q ss_pred EcCCC-cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE-EEEeCCCeEEEEEcCCccccCCCCCCC
Q 009266 169 CGEDG-LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (538)
Q Consensus 169 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~ 246 (538)
+..++ .+.+|+..+++....+... ..+.+++|+|+ +.+| +++..++.|++|++.+++......+..
T Consensus 132 ~~~~~~~~~~~d~~~~~~~~~~~~~-----------~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 132 TSETTNMAHFIDTKTYEIVDNVLVD-----------QRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred EecCCCeEEEEeCCCCeEEEEEEcC-----------CCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 76654 5778899887665443211 13567899998 5555 555569999999999876433321110
Q ss_pred CCcccCCCCccCCCccceEEEEEcCCCCEEEEE--cCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
+ .. .........++|+|++++++++ ..+.+.+|++.++
T Consensus 200 ~-------~~-~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-------------------------------- 239 (300)
T TIGR03866 200 P-------GV-HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-------------------------------- 239 (300)
T ss_pred c-------cc-ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC--------------------------------
Confidence 0 00 0011234568899999975543 3568999998753
Q ss_pred CCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe-ccCCeEEEeeccCcceeEEeecCcceeeEEeecC
Q 009266 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (538)
.....+. +.. .+.+++| +|+|++|+++ ..++.|++||+.+++++..++.. ..++.++++|
T Consensus 240 ------~~~~~~~-~~~--~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 240 ------EVLDYLL-VGQ--RVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ------cEEEEEE-eCC--CcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 1222222 122 2778898 9999999886 46899999999999999999864 5568888876
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1.7e-26 Score=203.54 Aligned_cols=360 Identities=14% Similarity=0.154 Sum_probs=262.4
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCC--------eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDR--------RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~--------~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~ 124 (538)
..+.+.+|...|.|++.+|+.-.+++|-.-| .++||+..+-..++.+ ......|.|++|++...|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEe
Confidence 4556779999999999999988888775544 5999998777776666 456678999999997667777665
Q ss_pred e--CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcce
Q 009266 125 A--ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (538)
Q Consensus 125 ~--~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (538)
. .+..+.||+...+..... .......|..+.|+|..++++++++. +.+.+|.++.+...+........ .
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~--vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~------e 245 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGP--VKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKR------E 245 (626)
T ss_pred cCCCccccchhhchhhhccCc--ceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccc------c
Confidence 3 467899999987665544 55566788999999999988888876 78999999988776554332221 1
Q ss_pred eeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C
Q 009266 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D 281 (538)
Q Consensus 203 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 281 (538)
...|.|++|.++ + -+++|..+|.|.||+..+.+.. +... .|.+.|.+++...+|++|. ++ +
T Consensus 246 kk~Vl~v~F~en-g-dviTgDS~G~i~Iw~~~~~~~~--------------k~~~-aH~ggv~~L~~lr~GtllS-GgKD 307 (626)
T KOG2106|consen 246 KKFVLCVTFLEN-G-DVITGDSGGNILIWSKGTNRIS--------------KQVH-AHDGGVFSLCMLRDGTLLS-GGKD 307 (626)
T ss_pred ceEEEEEEEcCC-C-CEEeecCCceEEEEeCCCceEE--------------eEee-ecCCceEEEEEecCccEee-cCcc
Confidence 247999999996 3 6889999999999999876532 2222 6899999999999999888 55 5
Q ss_pred CeEEEeeccCCCCC-CCCCCCCccccccccccCCCCccccCCCCCCCC-----cccCCceeeccccceeeeEEEEecCCC
Q 009266 282 EFIYLFTQDMGLGP-NPPPSSPVSTRSEASEMGSDHTSAASPSTANTD-----VRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (538)
Q Consensus 282 ~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~v~~~s~~~ 355 (538)
.+|..|+-.-.+.. ..++......+ .+.+++.-+.+....+.. .........+|... .+.++. +|..
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~G~iR----tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de--lwgla~-hps~ 380 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQFGPIR----TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE--LWGLAT-HPSK 380 (626)
T ss_pred ceEEeccccccccccccCchhcCCee----EEecCCCcEEEeeccceEEEeeecCCceEEEEecccc--eeeEEc-CCCh
Confidence 68999993322111 11221111111 112222223333333221 12333455677765 889998 9999
Q ss_pred cEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceeeeecc--
Q 009266 356 EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVLIPD-- 433 (538)
Q Consensus 356 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~-- 433 (538)
.++++++.|+.+++|+ ..+++-+.. -..++.++.|+|.| .||.|...|...|.+.++....++....+++..++
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys 456 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYS 456 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEc
Confidence 9999999999999999 444443332 24578999999999 99999999999999999976666555566666665
Q ss_pred cCc-eeeeccCCCCCceee
Q 009266 434 HIR-WFALGDDDDGDYYFY 451 (538)
Q Consensus 434 ~~~-~l~s~~~d~~~~~~~ 451 (538)
++| +|+.++.|+..|.|.
T Consensus 457 p~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred CCCCEEEEecCCCeEEEEE
Confidence 777 999999999888884
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=9.1e-28 Score=209.22 Aligned_cols=264 Identities=17% Similarity=0.203 Sum_probs=202.1
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC-CCEEEEecCCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDR 83 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~d~ 83 (538)
+-|++...+||.+..+.|.|||+.+-.-..+ ..-.+++..+|.||.+.=.+|+|++. .-+|++|+.++
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----------~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----------ASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCccc-----------ccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4577788899999999999999984332211 00134556689999998888999984 45899999999
Q ss_pred eEEEEECCCCce------eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEE
Q 009266 84 RVILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (538)
Q Consensus 84 ~i~iw~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (538)
+|++|++..... ......+|...|..++|+|. ...++++++.|+.+.|||++++.........+|...|.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 999999975432 23445899999999999995 67789999999999999999654444455789999999999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEecCCCCe-eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
|+|-+..+||||+.|++|++||+|+... +..+.. |...|.++.|+|....+||+++.|+.+.+||+..-
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~----------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG----------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccC----------CCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 9999889999999999999999998654 223332 44589999999998899999999999999999864
Q ss_pred cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE-EEEc-CCeEEEeeccC
Q 009266 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN-DEFIYLFTQDM 291 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~-~~~i~~~d~~~ 291 (538)
......... ......+...-++|...|..+.|+|+..++ ++.+ ++.+.||.+..
T Consensus 350 g~eq~~eda-~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 350 GEEQSPEDA-EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccChhhh-ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 322210000 000011234556789999999999998765 5555 55899999874
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.4e-27 Score=211.39 Aligned_cols=291 Identities=19% Similarity=0.266 Sum_probs=220.5
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
.+...++||++.|.||...|.|.+||+|+.||+|+||.+.+|+++.++. ..+.|.||+|+|..+-..||++-... +.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ 467 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGEC-VL 467 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCc-eE
Confidence 4556789999999999999999999999999999999999999999883 45689999999944444455544333 33
Q ss_pred EeecccC---------------------------------ceee--eeeccccCCCcEEEEEcCCCCcEEEEEcCC---C
Q 009266 132 HAQILER---------------------------------GGVE--TKLLGKHQGRAHKLAIEPGSPHVFYTCGED---G 173 (538)
Q Consensus 132 vwd~~~~---------------------------------~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g 173 (538)
|-+..-+ .... ....-.|...|+.|.|+..| .+|++..-+ .
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~ 546 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNK 546 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcc
Confidence 3332111 0000 11233578899999999999 577776543 4
Q ss_pred cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCC
Q 009266 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (538)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 253 (538)
.|.|+++........|+. ..+.|.++.|+|. ..+|++++. ..|+|||+....+.+.
T Consensus 547 ~VliHQLSK~~sQ~PF~k----------skG~vq~v~FHPs-~p~lfVaTq-~~vRiYdL~kqelvKk------------ 602 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRK----------SKGLVQRVKFHPS-KPYLFVATQ-RSVRIYDLSKQELVKK------------ 602 (733)
T ss_pred eEEEEecccccccCchhh----------cCCceeEEEecCC-CceEEEEec-cceEEEehhHHHHHHH------------
Confidence 688999887765544432 2336899999998 556666554 6799999988654322
Q ss_pred CCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccC
Q 009266 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (538)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
+. .....|.+++++|.|..|+.++ ++++..||+... .++
T Consensus 603 --L~-tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls-------------------------------------skP 642 (733)
T KOG0650|consen 603 --LL-TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-------------------------------------SKP 642 (733)
T ss_pred --Hh-cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC-------------------------------------cch
Confidence 11 2356899999999998888887 668999998754 456
Q ss_pred CceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc-------Cc--ceeEEeecCcce----eeEEeecCCCCe
Q 009266 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-------GG--ELIRVIEADRHV----VNCIEPHPHSTV 399 (538)
Q Consensus 333 ~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~-------~~--~~~~~~~~h~~~----v~~~~~s~~~~~ 399 (538)
.+++.-|... +++|+| ++.-.++++|+.||++.||.-. +. -+++.|++|... |..+.|+|...+
T Consensus 643 yk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 643 YKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred hHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence 7788888887 999999 9999999999999999998631 11 345788888765 889999999999
Q ss_pred EEEeecCCceEEec
Q 009266 400 LASSGIESDIKILT 413 (538)
Q Consensus 400 l~s~~~dg~v~vw~ 413 (538)
|++++.||+|++|.
T Consensus 720 LfsAGAd~tirlfT 733 (733)
T KOG0650|consen 720 LFSAGADGTIRLFT 733 (733)
T ss_pred EEecCCCceEEeeC
Confidence 99999999999993
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2e-27 Score=217.33 Aligned_cols=279 Identities=15% Similarity=0.207 Sum_probs=231.6
Q ss_pred eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEE-EEEcCCCCcEEEEEcCCCcE
Q 009266 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK-LAIEPGSPHVFYTCGEDGLV 175 (538)
Q Consensus 97 ~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i 175 (538)
...+.+|...|..+++.+ +..+++++.||++++|.-.....+....+.+|.+.|.. +++.+..+-.|++|+.|.+|
T Consensus 7 s~~l~gH~~DVr~v~~~~---~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTD---GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred EEEeccCccchheeEecC---CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 334489999999999874 56899999999999999888888777778888888877 88876443468999999999
Q ss_pred EEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCC
Q 009266 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (538)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
.+|.+.+..+...+..|+ ..|+++....+ +. +++|+.|.++++|-..... .
T Consensus 84 ~v~~~~~~~P~~~LkgH~----------snVC~ls~~~~-~~-~iSgSWD~TakvW~~~~l~-----------------~ 134 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHK----------SNVCSLSIGED-GT-LISGSWDSTAKVWRIGELV-----------------Y 134 (745)
T ss_pred EEEecCCCCchhhhhccc----------cceeeeecCCc-Cc-eEecccccceEEecchhhh-----------------c
Confidence 999999999998888654 37999988776 44 9999999999999887643 2
Q ss_pred ccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCce
Q 009266 256 LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV 335 (538)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (538)
...+|...|.++++-|.+.++..+++..|++|.- ...+++
T Consensus 135 ~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~----------------------------------------~~~l~t 174 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG----------------------------------------GTLLKT 174 (745)
T ss_pred ccCCcchheeeeeecCCCcEEeccCcceeeeccC----------------------------------------Cchhhh
Confidence 3567899999999999995555555779999985 346789
Q ss_pred eeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 336 ~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
|.+|... |..+++ -++ ..+++++.||.|++|++ +|+++.++.+|+.-|+++...+.+..++|++.|++++||+..
T Consensus 175 f~gHtD~--VRgL~v-l~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 175 FSGHTDC--VRGLAV-LDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred hccchhh--eeeeEE-ecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9999998 999998 444 46788999999999999 899999999999999999988999999999999999999987
Q ss_pred CCcccccCccce-eeeecc--cCceeeeccCCCCCceeeccc
Q 009266 416 AADRATLPTNIE-QVLIPD--HIRWFALGDDDDGDYYFYDIY 454 (538)
Q Consensus 416 ~~~~~~~~~~~~-~~~~~~--~~~~l~s~~~d~~~~~~~~~~ 454 (538)
++.....+.. .++++. ..+-|++|++||..++|....
T Consensus 250 --e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 250 --ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred --ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 4444444433 666665 788999999999999997653
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9e-27 Score=203.04 Aligned_cols=290 Identities=14% Similarity=0.224 Sum_probs=219.4
Q ss_pred CCCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCC-EEEEec
Q 009266 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISGS 80 (538)
Q Consensus 2 ~~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~t~~ 80 (538)
...-|+|..++|++++.|++++||.+. |+.- +.++.+.--..+|.+++|.|+|. .+++++
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N------------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVN------------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEec-CccC------------------hhheeeeeccCccceeeecCCCceEEEecc
Confidence 345689999999999999999999998 5432 12344444578999999999998 999999
Q ss_pred CCCeEEEEECCCCceeee-eccCCC-CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 81 DDRRVILWDWKTERVKLS-FHSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~-~~~~~~-~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
....++.||+.+.+.... .+.++. ..+.....+| ++++|+..+..|.|.|....++..+.... -.+.|..++|
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh--d~~fia~~G~~G~I~lLhakT~eli~s~K---ieG~v~~~~f 352 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH--DSNFIAIAGNNGHIHLLHAKTKELITSFK---IEGVVSDFTF 352 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecC--CCCeEEEcccCceEEeehhhhhhhhheee---eccEEeeEEE
Confidence 999999999998775322 113333 3567778899 99999999999999999998887776533 3467999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccc
Q 009266 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (538)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 238 (538)
+.++ ..|++++.+|.|.+||+++..++..+.-.. ...-+++|.+++ +.+||+|+..|.|.||+..+...
T Consensus 353 sSds-k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G---------~v~gts~~~S~n-g~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 353 SSDS-KELLASGGTGEVYVWNLRQNSCLHRFVDDG---------SVHGTSLCISLN-GSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred ecCC-cEEEEEcCCceEEEEecCCcceEEEEeecC---------ccceeeeeecCC-CceEEeccCcceEEEeccchhhc
Confidence 9999 567777778999999999998888776432 113467788886 78999999999999999776432
Q ss_pred cCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC---CeEEEeeccCCCCCCCCCCCCccccccccccCCC
Q 009266 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (538)
... | .|......-...|++|+|+|++++||.++. +.+++-.+.+......++
T Consensus 422 s~~-----P----kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP---------------- 476 (514)
T KOG2055|consen 422 STN-----P----KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP---------------- 476 (514)
T ss_pred cCC-----C----CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC----------------
Confidence 111 1 123333334568999999999999999883 468888876543322211
Q ss_pred CccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
... ..-..++|++| ||.+-|||.|...|+|.+|.+.
T Consensus 477 ----------------~~n-----~~vg~vtc~aF-SP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 477 ----------------TSN-----TKVGHVTCMAF-SPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ----------------CCC-----CcccceEEEEe-cCCCceEEeecCCCceeeEeec
Confidence 111 11113899999 9999999999999999999874
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.4e-27 Score=210.13 Aligned_cols=274 Identities=18% Similarity=0.303 Sum_probs=214.5
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
+...++++||+ .|.|+|||+....-. .....+.+ + .....|.++.++|+|+.|++|+.-.++.
T Consensus 428 S~~trhVyTgG-kgcVKVWdis~pg~k------------~PvsqLdc---l-~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 428 SNPTRHVYTGG-KGCVKVWDISQPGNK------------SPVSQLDC---L-NRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred cCCcceeEecC-CCeEEEeeccCCCCC------------Cccccccc---c-CcccceeeeEecCCCceEEeccccceee
Confidence 34567888888 578999999732110 00111111 1 1356799999999999999999999999
Q ss_pred EEECCCCceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcE
Q 009266 87 LWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 87 iw~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
|||+......... +....-..++++.+| +.+..++|..||.|.|||+.+...+.. +++|+..+.||.++++| ..
T Consensus 491 iWDLAapTprikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~Vrq--fqGhtDGascIdis~dG-tk 565 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISKDG-TK 565 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeec--ccCCCCCceeEEecCCC-ce
Confidence 9999876543222 233445788999999 999999999999999999998777665 99999999999999999 68
Q ss_pred EEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
|.||+-|.+||.||+++++.++... ....|.++.++|. +.+|++|-.++.|.+.......
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhd-----------F~SQIfSLg~cP~-~dWlavGMens~vevlh~skp~-------- 625 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHD-----------FSSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPE-------- 625 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhh-----------hhhhheecccCCC-ccceeeecccCcEEEEecCCcc--------
Confidence 9999999999999999998776654 3447999999997 7899999999999988877643
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
+.....|..-|.++.|.+.|+++++.+ ++-+..|.+..+.
T Consensus 626 --------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa------------------------------- 666 (705)
T KOG0639|consen 626 --------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA------------------------------- 666 (705)
T ss_pred --------ceeecccccEEEEEEecccCceeeecCchhhhhhccCcccc-------------------------------
Confidence 233445788999999999999999988 5578899876542
Q ss_pred CCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
..|+.... ..|.++.. |.+.+||++|+.+....||.+
T Consensus 667 ---------siFqskE~-SsVlsCDI-S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 ---------SIFQSKES-SSVLSCDI-SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---------ceeecccc-Ccceeeee-ccCceEEEecCCCcceEEEEE
Confidence 22222222 24888888 999999999999988888865
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.7e-26 Score=213.23 Aligned_cols=253 Identities=13% Similarity=0.204 Sum_probs=200.9
Q ss_pred cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEec
Q 009266 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (538)
Q Consensus 101 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (538)
.+|....+.|+|.| +|.+|++|+.+|.|++|+.......+. .+..+...|.+++... .+|++|+.+++|.+|.+
T Consensus 10 yaht~G~t~i~~d~--~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP--DGEFICTCGSDGDIRKWKTNSDEEEPE-TIDISGELVSSIACYS---NHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcC--CCCEEEEecCCCceEEeecCCcccCCc-hhhccCceeEEEeecc---cceEEeeccceEEEeeC
Confidence 37889999999999 999999999999999999876632222 1333777788887765 46999999999999999
Q ss_pred CCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC
Q 009266 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (538)
..++.-..+.. ...+++.++|+.+ |.++|.|+.|-.|++.++.... ......+|
T Consensus 84 ps~~~~~iL~R----------ftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s---------------~~~~lrgh 137 (933)
T KOG1274|consen 84 PSGEEDTILAR----------FTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSS---------------QEKVLRGH 137 (933)
T ss_pred CCCCccceeee----------eeccceEEEEecC-CcEEEeecCceeEEEEeccccc---------------hheeeccc
Confidence 98876544433 2237899999997 7999999999999999998764 24455678
Q ss_pred ccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecc
Q 009266 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
..+|.++.|+|++.+||+.+ +|.|++|++..+....++..... .....
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k-------------------------------~n~~~ 186 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK-------------------------------DNEFI 186 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc-------------------------------ccccc
Confidence 99999999999999999987 88999999998765544331110 01111
Q ss_pred ccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeec--CcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 340 ~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
....+..++| +|+|..++....++.|++|+..++.....+.. +...+..++|+|+|+|||+++.+|.|.||++.+-
T Consensus 187 -~s~i~~~~aW-~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 187 -LSRICTRLAW-HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred -ccceeeeeee-cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 0113678888 99988888888899999999999988877753 4455999999999999999999999999999973
Q ss_pred c
Q 009266 418 D 418 (538)
Q Consensus 418 ~ 418 (538)
+
T Consensus 265 ~ 265 (933)
T KOG1274|consen 265 E 265 (933)
T ss_pred h
Confidence 3
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=203.98 Aligned_cols=372 Identities=15% Similarity=0.167 Sum_probs=259.1
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
++.+|.+.+.+|.|.-||+.+++.+ ..+....+.|++++.+|.+..++.|+.+|.+..+
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~---------------------~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~ 137 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQK---------------------YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDF 137 (691)
T ss_pred cCCeEEeecCCceEEEEecccCcee---------------------EEecCCCcceeEEEeCCccceEEeecCCceEEEE
Confidence 5678999999999999999987764 5677788999999999999999999999988888
Q ss_pred ECCCCceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee-----eccc-cCCCcEEEEEcCC
Q 009266 89 DWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-----LLGK-HQGRAHKLAIEPG 161 (538)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-----~~~~-~~~~v~~~~~~~~ 161 (538)
+...+...... +...++.|.+++|+| ++..|++|+.||.|++||+.++..+... .+.. ...-|.++.|..+
T Consensus 138 s~~p~~I~~~r~l~rq~sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd 215 (691)
T KOG2048|consen 138 SIGPDKITYKRSLMRQKSRVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD 215 (691)
T ss_pred ecCCceEEEEeecccccceEEEEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec
Confidence 88877764433 345568999999999 9999999999999999999988776521 1222 3345778888876
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcccc--
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD-- 239 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-- 239 (538)
+ .|++|..-|+|.+||...+..++.+.++. ..|.+++..++ +..+++++.|+.|..|...+.+..
T Consensus 216 ~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~----------adVl~Lav~~~-~d~vfsaGvd~~ii~~~~~~~~~~wv 282 (691)
T KOG2048|consen 216 S--TIASGDSAGTVTFWDSIFGTLIQSHSCHD----------ADVLALAVADN-EDRVFSAGVDPKIIQYSLTTNKSEWV 282 (691)
T ss_pred C--cEEEecCCceEEEEcccCcchhhhhhhhh----------cceeEEEEcCC-CCeEEEccCCCceEEEEecCCcccee
Confidence 6 58999999999999999999998888754 37999999987 688999999998887776654220
Q ss_pred ---CCC-------------------------------C---------------------------------------CCC
Q 009266 240 ---GST-------------------------------D---------------------------------------FGQ 246 (538)
Q Consensus 240 ---~~~-------------------------------~---------------------------------------~~~ 246 (538)
... . .+.
T Consensus 283 ~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS 362 (691)
T KOG2048|consen 283 INSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGS 362 (691)
T ss_pred eeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccC
Confidence 000 0 000
Q ss_pred C--C---cccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCC--CCCCCccc-cccccccCCCCcc
Q 009266 247 P--A---DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP--PPSSPVST-RSEASEMGSDHTS 318 (538)
Q Consensus 247 ~--~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~ 318 (538)
. . ....+.++.......|.+.+.+|+|++|+.+.-..+++|.++....... +...+... ......+..+...
T Consensus 363 ~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k 442 (691)
T KOG2048|consen 363 VILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNK 442 (691)
T ss_pred cccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCce
Confidence 0 0 0000111112234678999999999999999977788888765321111 11111111 1111111211111
Q ss_pred ccCCC---------CCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceee
Q 009266 319 AASPS---------TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN 389 (538)
Q Consensus 319 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~ 389 (538)
+.+.+ ...+...+.+..+........|..+.. ||+|+|||+.+..|.|.+|++++++.......-...|+
T Consensus 443 ~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~-SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vT 521 (691)
T KOG2048|consen 443 LFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVV-SSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVT 521 (691)
T ss_pred EEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEE-cCCCCEEEEEeccceEEEEEcccceeecchhccCccee
Confidence 11111 011122222333332223334888887 99999999999999999999998866544433447899
Q ss_pred EEeecC-CCCeEEEeecCCceEEecCCCC
Q 009266 390 CIEPHP-HSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 390 ~~~~s~-~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
+++|+| ..+.|+.+..++.|.-|++...
T Consensus 522 a~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 522 AAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred eeeccccccCcEEEEecCCeEEEEecchh
Confidence 999995 5568999999999999999543
No 136
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=190.54 Aligned_cols=289 Identities=15% Similarity=0.209 Sum_probs=210.7
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
|-|++-|.+||+|+.+|.|.|||+.|... .+.+.+|..+|+|++||++|+.|+|+|.|.
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i---------------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRI---------------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccch---------------------hhhhhccccceeEEEecCCCCEeeeecCCc
Confidence 45889999999999999999999997654 467899999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee--eeeccccCCCcEEEEEcCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE--TKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~ 161 (538)
.|++||+..|.++.++ ...++|+.+.|+|.... .++++-.+..-.+-++..+.... ...-........+..|.+.
T Consensus 88 si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~ 164 (405)
T KOG1273|consen 88 SIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR 164 (405)
T ss_pred eeEEEeccCCCceeEE--EccCccceeeeccccCC-eEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC
Confidence 9999999999988887 46789999999994333 33333333334444544332211 1000011122334468888
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
| +++++|...|.+.+++..+.+++..++... ...|..+.|+.. +.+|+.-+.|+.||.|+++..-..+.
T Consensus 165 g-~yIitGtsKGkllv~~a~t~e~vas~rits---------~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r 233 (405)
T KOG1273|consen 165 G-KYIITGTSKGKLLVYDAETLECVASFRITS---------VQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGR 233 (405)
T ss_pred C-CEEEEecCcceEEEEecchheeeeeeeech---------heeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCc
Confidence 8 799999999999999999999988887543 237899999986 79999999999999999984321111
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC--eEEEeeccCCCCCCCCCCCCccccccccccCCCCccc
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
-. .+......+-. -.+.+-.+++|+.+|.|+++++.. .++||....
T Consensus 234 ~~--e~e~~~K~qDv--VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~---------------------------- 281 (405)
T KOG1273|consen 234 DG--EVEPEHKLQDV--VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI---------------------------- 281 (405)
T ss_pred cC--CcChhHHHHHH--HhhhhhhheeecCCccEEEeccccceeEEEEecCC----------------------------
Confidence 00 00000000000 013455788999999999988843 799999877
Q ss_pred cCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
+..++.+.|.++. ....+.| +|-...|++- ..|.|+||..
T Consensus 282 ----------GsLVKILhG~kgE-~l~DV~w-hp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 282 ----------GSLVKILHGTKGE-ELLDVNW-HPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ----------cceeeeecCCchh-heeeccc-ccceeeeeec-cCCceEEEEe
Confidence 4567777777644 3677888 8887778777 6799999985
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.2e-25 Score=205.86 Aligned_cols=277 Identities=13% Similarity=0.161 Sum_probs=196.8
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceE-EEEeCCCcEEEeecccCceeeeeeccccCC
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQG 151 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 151 (538)
+..+++++.++.|++|++.+++.+..+ ..+ ..+.+++|+| ++..+ ++++.++.|++|++.+++.... +..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIGT--LPSGP- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEEe--ccCCC-
Confidence 357889999999999999999887776 444 3467899999 98876 5667789999999988766543 43333
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC-eEEE
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRL 230 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~i 230 (538)
.+..++|+|++..++++++.++.|++||+++.+.+..+... ..+.+++|+|+ +.+++++..++ .+++
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~d-g~~l~~~~~~~~~~~~ 141 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-----------VEPEGMAVSPD-GKIVVNTSETTNMAHF 141 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-----------CCcceEEECCC-CCEEEEEecCCCeEEE
Confidence 35678999999545556667899999999987766555421 13578999997 67888777664 5677
Q ss_pred EEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCcccccc
Q 009266 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (538)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (538)
|+..+++.... .. ....+.+++|+|++++|++++ ++.|++|++.++.....+..
T Consensus 142 ~d~~~~~~~~~--------------~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~-------- 197 (300)
T TIGR03866 142 IDTKTYEIVDN--------------VL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF-------- 197 (300)
T ss_pred EeCCCCeEEEE--------------EE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee--------
Confidence 89876543211 00 112356799999999886544 66899999987532221110
Q ss_pred ccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE-eccCCeEEEeeccCcceeEEeecCcce
Q 009266 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHV 387 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~-gs~dg~i~iwd~~~~~~~~~~~~h~~~ 387 (538)
.....+........++| +|+++++++ .+.++.|.+|++.+++.+..+. +...
T Consensus 198 -------------------------~~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~ 250 (300)
T TIGR03866 198 -------------------------EIPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQR 250 (300)
T ss_pred -------------------------cccccccccCCccceEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCC
Confidence 00000111112346777 999998654 4456789999999988876654 3457
Q ss_pred eeEEeecCCCCeEEEe-ecCCceEEecCCCCcc
Q 009266 388 VNCIEPHPHSTVLASS-GIESDIKILTPNAADR 419 (538)
Q Consensus 388 v~~~~~s~~~~~l~s~-~~dg~v~vw~~~~~~~ 419 (538)
+.+++|+|++++|+++ +.++.|+||++.++++
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 8999999999998876 5689999999998775
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.4e-25 Score=186.06 Aligned_cols=269 Identities=19% Similarity=0.169 Sum_probs=199.8
Q ss_pred eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEE
Q 009266 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (538)
Q Consensus 99 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 178 (538)
+.......|..|.|+| .+..|++++.||.+++|++....... ...|..++.+++|.+.. .+++|+.||.|+++
T Consensus 8 l~npP~d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~---~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKL---KFKHGAPLLDCAFADES--TIVTGGLDGQVRRY 80 (323)
T ss_pred cCCCChhceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhh---heecCCceeeeeccCCc--eEEEeccCceEEEE
Confidence 3345567899999998 88889999999999999998774433 34588999999999965 58999999999999
Q ss_pred ecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccC
Q 009266 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (538)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
|+.++...+... |..++.||.+.+- ...+++|+.|++|++||.+........
T Consensus 81 Dln~~~~~~igt-----------h~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~~---------------- 132 (323)
T KOG1036|consen 81 DLNTGNEDQIGT-----------HDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGTF---------------- 132 (323)
T ss_pred EecCCcceeecc-----------CCCceEEEEeecc-CCeEEEcccCccEEEEecccccccccc----------------
Confidence 999988765554 5668999999986 679999999999999999974322211
Q ss_pred CCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee
Q 009266 259 DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (538)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.....|.++..+ |..|++|+ +..+.+||+++.....+. .
T Consensus 133 d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~--------------------------------------r 172 (323)
T KOG1036|consen 133 DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR--------------------------------------R 172 (323)
T ss_pred ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh--------------------------------------c
Confidence 112366666654 45666655 669999999875332211 1
Q ss_pred ccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc----ceeEEeecCc---------ceeeEEeecCCCCeEEEee
Q 009266 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----ELIRVIEADR---------HVVNCIEPHPHSTVLASSG 404 (538)
Q Consensus 338 ~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~~ 404 (538)
...-...+.+|++ -|++.=.|+++-+|+|.+=.+... +....|+.|. -+|++|+|+|-.+.||||+
T Consensus 173 eS~lkyqtR~v~~-~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 173 ESSLKYQTRCVAL-VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred cccceeEEEEEEE-ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 1111123788888 678888899999999987655544 3345666665 3799999999999999999
Q ss_pred cCCceEEecCCCCcc-cccCccceeeeecc--cCc-eeeeccC
Q 009266 405 IESDIKILTPNAADR-ATLPTNIEQVLIPD--HIR-WFALGDD 443 (538)
Q Consensus 405 ~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~--~~~-~l~s~~~ 443 (538)
.||.|.+|++.+.+. ..+.+....|.+++ .+| .||.+++
T Consensus 252 sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 252 SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999998765 44444444455555 445 7776644
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=4e-26 Score=198.88 Aligned_cols=306 Identities=17% Similarity=0.224 Sum_probs=219.5
Q ss_pred eeeeEEcCCcCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCCce---eeeeccCCCCCeEEEEEeecCCCceEEEEeC
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g--~~l~t~~~d~~i~iw~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~ 126 (538)
......+-|.++|++++|+|.. ++||+|..-|+|-+|++.+.+. -..+...|..+|.+|.|+|. +...+++.+.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~-n~s~i~ssSy 255 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA-NTSQIYSSSY 255 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-Chhheeeecc
Confidence 4456677789999999999954 6889999999999999953221 22233789999999999994 6778999999
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe-eeeeeecccCCCCCcceeee
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 205 (538)
||+|++-|++.........+..-...+..+.|+...+ .++.+..=|...+||++++.. ...+.. |...
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~l----------h~kK 324 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRL----------HKKK 324 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhh----------hhcc
Confidence 9999999998765433322333445677788888774 455565556999999998765 333333 3337
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeE
Q 009266 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (538)
|++++++|....+||+++.|++++|||+|....... |......|...|.++.|||.+-.|++.+ ++.|
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~I 393 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEI 393 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------cceecccccceeeeeEEcCCCCceEeeccCCce
Confidence 999999999899999999999999999998653211 1223345788999999999765455555 7799
Q ss_pred EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee-c--cccceeeeEEEEecCCCcEEEEe
Q 009266 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-G--HRNCVTVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~~v~~~s~~~~~l~~g 361 (538)
+||+..--.. +..+..++. . +....+.....| .|+..+|++|
T Consensus 394 Rv~dss~~sa----------------------------------~~~p~~~I~Hn~~t~RwlT~fKA~W-~P~~~li~vg 438 (498)
T KOG4328|consen 394 RVFDSSCISA----------------------------------KDEPLGTIPHNNRTGRWLTPFKAAW-DPDYNLIVVG 438 (498)
T ss_pred EEeecccccc----------------------------------cCCccceeeccCcccccccchhhee-CCCccEEEEe
Confidence 9999741000 011111111 1 111223455667 9999999999
Q ss_pred ccCCeEEEeeccCcceeEEeecCcc-eeeE-EeecCCCC-eEEEeecCCceEEecCC
Q 009266 362 SDCGRIFIWKKKGGELIRVIEADRH-VVNC-IEPHPHST-VLASSGIESDIKILTPN 415 (538)
Q Consensus 362 s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~-~~~s~~~~-~l~s~~~dg~v~vw~~~ 415 (538)
-.-..|-||+-..++.+..+..... .|.+ ..|+|-+. ++|-++..|.|+||.-.
T Consensus 439 ~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 439 RYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 9999999999988888887755443 4444 47999988 44555567889988654
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.5e-25 Score=184.37 Aligned_cols=303 Identities=17% Similarity=0.238 Sum_probs=215.1
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEe---eeeeEEcCCcCcEEEEEEcC-CCCEEEEecC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL---GIYAKLDKHRGCVNTVSFNT-DGDILISGSD 81 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~s~-~g~~l~t~~~ 81 (538)
.+-.++++++|+.||.|.|||+++...... ...+.+- --...-.+|+-.|..+.|-| +..++.+++.
T Consensus 52 d~tegrymlSGgadgsi~v~Dl~n~t~~e~---------s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 52 DLTEGRYMLSGGADGSIAVFDLQNATDYEA---------SGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred ccccceEEeecCCCccEEEEEeccccchhh---------ccceeheeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 345789999999999999999985431100 0000010 11223457889999999999 6678999999
Q ss_pred CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCC-CceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
|.++++||..+-+....| .-.+.|++-+++|-.- ..++|+|..+-.|++.|+.++..... +.+|...|.++.|+|
T Consensus 123 DhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSP 198 (397)
T ss_pred cceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--eccccCceEEEEecc
Confidence 999999999998887776 3567899989988433 45677888889999999999887655 999999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEecCCC-CeeeeeeecccCCC----CCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDR----RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
....+|++|+.||.|++||++.. .+...+..+..... ....+.+.|+.++|..+ +.++++.+.+..+++|+..+
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc-chhhhhccCccceEEeeccc
Confidence 99889999999999999999876 45554444332111 12336778999999998 79999999999999999998
Q ss_pred ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCC
Q 009266 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (538)
++.... .++.. +... ..+ ..+. +.-...+.++..-.++.+.++++-.
T Consensus 278 G~ntl~-~~g~~----~~n~-~~~--~~~~-~~~~~s~vfv~~p~~~~lall~~~s------------------------ 324 (397)
T KOG4283|consen 278 GRNTLR-EFGPI----IHNQ-TTS--FAVH-IQSMDSDVFVLFPNDGSLALLNLLE------------------------ 324 (397)
T ss_pred Cccccc-ccccc----cccc-ccc--ceEE-EeecccceEEEEecCCeEEEEEccC------------------------
Confidence 763211 01110 0000 000 0111 2211122333333456777777655
Q ss_pred CccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
...++.+..|-. .+.+..| .|+=+...+|..|+.|..|-.
T Consensus 325 --------------gs~ir~l~~h~k--~i~c~~~-~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 325 --------------GSFVRRLSTHLK--RINCAAY-RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred --------------ceEEEeeecccc--eeeEEee-cCchhhhhccccCCccccccc
Confidence 445666777733 3777776 899899999999999999986
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.2e-26 Score=198.73 Aligned_cols=291 Identities=15% Similarity=0.189 Sum_probs=216.1
Q ss_pred EecCCC-eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCceeeeeeccccCCCcEE
Q 009266 78 SGSDDR-RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHK 155 (538)
Q Consensus 78 t~~~d~-~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~v~~ 155 (538)
+++.+. .+.+|++.+|..+.++..+....-.++... .+.+++++.. ...|.+|.+........ ..--.++|.+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q--~~v~Pg~v~a 86 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQ--YIVLPGPVHA 86 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhh--hcccccceee
Confidence 344454 499999999999888843323322233322 4467766654 56899999875544331 2234678999
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
++-+|.| ++|+.|+..|.|++|.+.+|..+..+.. |-..|+|+.|+.+ +.+|++|+.||.|.+|.+..
T Consensus 87 l~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~a----------HYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 87 LASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSA----------HYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred eecCCCc-eEEEeecccCcEEEEEeccccHHHHHHh----------hccceeEEEEeCC-CcEEEecCCCccEEEEEEEe
Confidence 9999999 7888888999999999999999888765 3448999999997 79999999999999999875
Q ss_pred ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC--CEEEEEc-CCeEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
.--.. +.....+...+..|.-+|+.+...+.| .+|++++ +.++++|++..+.
T Consensus 155 lv~a~------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~------------------- 209 (476)
T KOG0646|consen 155 LVSAD------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV------------------- 209 (476)
T ss_pred ecccc------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-------------------
Confidence 42111 111224566777889999999988764 4677777 5599999998752
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc----------------c
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----------------E 376 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~----------------~ 376 (538)
.+.++. .+..+.+++. +|.++.+++|+.+|.|.+.++... .
T Consensus 210 -------------------LLlti~---fp~si~av~l-Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 210 -------------------LLLTIT---FPSSIKAVAL-DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred -------------------eeEEEe---cCCcceeEEE-cccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 222222 2334889998 999999999999999998877432 2
Q ss_pred eeEEeecCcc--eeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCc-cceeeeecc
Q 009266 377 LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT-NIEQVLIPD 433 (538)
Q Consensus 377 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~ 433 (538)
.+..+.+|.+ .|+|++.+-+|.+|++|+.||+|+||++.+.++.+... ..+.|..+.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 4456778988 99999999999999999999999999999987754443 455554443
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=213.38 Aligned_cols=290 Identities=16% Similarity=0.218 Sum_probs=219.5
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeecc--CCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHS--GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~----~~~~~~~--~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~ 135 (538)
...++|+..++-..|+.++.. .++||.+.... +...+.. .-...+..|.|..+ ..++||+++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~-~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL-YSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccc-hhhhheeecCCCcEEEEec
Confidence 445667778888888888764 78888775432 2222111 11123556778753 6789999999999999999
Q ss_pred ccC-ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 136 LER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
... +......+..|...++++.|++..+++|++|+.||+|++||++..+...++... ...|+.++|+|.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n----------SESiRDV~fsp~ 187 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN----------SESIRDVKFSPG 187 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc----------chhhhceeeccC
Confidence 762 122223478899999999999999999999999999999999999888887753 337999999998
Q ss_pred CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCC
Q 009266 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (538)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (538)
.++.|+++...|.|++||+|.... ....+..|.++|.|+.|+|++.+||+|+ ++.|+||++.+.+
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r--------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDR--------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred CCceEEEecCCceEEEeeccCchh--------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 889999999999999999998652 2334456899999999999999999999 5589999987632
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc-EEEEec--cCCeEEEe
Q 009266 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS--DCGRIFIW 370 (538)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~~gs--~dg~i~iw 370 (538)
. ....++ ++.. .+.+|.| -|..+ .||+++ .|-.|+||
T Consensus 254 ~------------------------------------~~~~tI--nTia-pv~rVkW-RP~~~~hLAtcsmv~dtsV~VW 293 (839)
T KOG0269|consen 254 A------------------------------------KPKHTI--NTIA-PVGRVKW-RPARSYHLATCSMVVDTSVHVW 293 (839)
T ss_pred c------------------------------------cceeEE--eecc-eeeeeee-ccCccchhhhhhccccceEEEE
Confidence 1 111222 2211 3889999 88766 456554 46789999
Q ss_pred eccCc-ceeEEeecCcceeeEEeecC-CCCeEEEeecCCceEEecCCCC
Q 009266 371 KKKGG-ELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 371 d~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
|+... -+..++..|...++.++|-. +...|.+++.||+|..-.+...
T Consensus 294 DvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 294 DVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99654 34578889999999999965 3458999999999987766543
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=2e-25 Score=202.40 Aligned_cols=296 Identities=17% Similarity=0.201 Sum_probs=208.5
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
....||.+..+|.|.+++........ .-..++....|...|..+.|.|....|++++.|.++++|
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRL---------------EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcch---------------hhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 45569999999999999987433210 001134567899999999999977789999999999999
Q ss_pred ECCCCceeee-eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee-------------------------e
Q 009266 89 DWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-------------------------E 142 (538)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~-------------------------~ 142 (538)
++.+.++... +..+|.+.|.+++|.|. +...|++|+.||.|.|||++-...- .
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeccceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 9999887655 33799999999999994 6778899999999999998643210 0
Q ss_pred eeeccccCCCcEE---EEEcCCCCcEEEEEcC-CCcEEEEecCCCCeeeeeeecccCCCCCc-ceeeeeEEEEEcCCCCc
Q 009266 143 TKLLGKHQGRAHK---LAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNY-MTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 143 ~~~~~~~~~~v~~---~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 217 (538)
......+...|.+ +.+..+. ..||+++. |+.|+|||+++.................+ .....+.++..... |.
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-Gt 284 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-GT 284 (720)
T ss_pred ccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC-CC
Confidence 0111234444444 4445555 56788777 99999999998766544433333222222 12346778888876 56
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC--ccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE--QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~ 294 (538)
+|++.+.|+.|++|+++....... ....++ ...-..-..+|++.+|++++ +...++|.+.+.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~-------------~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~-- 349 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPV-------------AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP-- 349 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCch-------------hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc--
Confidence 777777799999999998753211 111111 11223345789999999999 558999999874
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCC-CcEEEEeccCCeEEEeecc
Q 009266 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~-~~~l~~gs~dg~i~iwd~~ 373 (538)
......+.+|... |++|+| .|. -.-+|+++.|.+++||++.
T Consensus 350 -----------------------------------e~~~~~l~Ght~e--Vt~V~w-~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 350 -----------------------------------EAPPALLLGHTRE--VTTVRW-LPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred -----------------------------------cCChhhhhCcceE--EEEEee-ccccCCCceeeccCcceEEEecc
Confidence 3445677888876 888888 443 3456777999999999996
Q ss_pred Cc
Q 009266 374 GG 375 (538)
Q Consensus 374 ~~ 375 (538)
.+
T Consensus 392 ~~ 393 (720)
T KOG0321|consen 392 NG 393 (720)
T ss_pred Cc
Confidence 54
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=215.24 Aligned_cols=225 Identities=21% Similarity=0.352 Sum_probs=185.0
Q ss_pred CCCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC-CCEEEEec
Q 009266 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGS 80 (538)
Q Consensus 2 ~~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~ 80 (538)
|..+..-+.++|||++..|.|.+||+... ++-+++..|..|+..|+++.|++. ..+|++||
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS 153 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKS------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGS 153 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCcc------------------ccchhhhHhhhhccceeeeeeccCCccEEEecC
Confidence 34455667789999999999999999841 122345678999999999999984 57899999
Q ss_pred CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
.||+|++||+...+...++ .+....|..|+|+|. .+.+++++...|.+++||++...... ..+..|.++|.|+.|+|
T Consensus 154 QDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~-~k~~AH~GpV~c~nwhP 230 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCE-KKLTAHNGPVLCLNWHP 230 (839)
T ss_pred CCceEEEEeeecccccccc-cccchhhhceeeccC-CCceEEEecCCceEEEeeccCchhHH-HHhhcccCceEEEeecC
Confidence 9999999999988887777 677889999999994 68899999999999999998765433 34889999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCccc
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKW 238 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~ 238 (538)
++ .+|||||.|++|+||++.+.+.......+ ...+|.++.|-|....+|++++ .|-.|+|||++..
T Consensus 231 nr-~~lATGGRDK~vkiWd~t~~~~~~~~tIn---------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP-- 298 (839)
T KOG0269|consen 231 NR-EWLATGGRDKMVKIWDMTDSRAKPKHTIN---------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP-- 298 (839)
T ss_pred CC-ceeeecCCCccEEEEeccCCCccceeEEe---------ecceeeeeeeccCccchhhhhhccccceEEEEeeccc--
Confidence 77 79999999999999999876655444433 4458999999999878888876 4778999999864
Q ss_pred cCCCCCCCCCcccCCCCccCCCccceEEEEEcC
Q 009266 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 271 (538)
+.|......|...++.++|..
T Consensus 299 ------------YIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 299 ------------YIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ------------cccceeeeccCccccceeccC
Confidence 345666677888888898865
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.6e-25 Score=181.74 Aligned_cols=272 Identities=15% Similarity=0.199 Sum_probs=198.4
Q ss_pred eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccC--ceeeeeeccccCCCcEEEEEcC-CCCcEEEEEcCCC
Q 009266 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER--GGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDG 173 (538)
Q Consensus 97 ~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg 173 (538)
..+..+|..-|+++.|.+ -|+.+|+|+.|++|+||+.... ....+...+.|.+.|..+.|.+ .-.+.+++++.|+
T Consensus 6 ~pi~s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cccccCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 345578999999999999 9999999999999999997543 3444555788999999999964 4348999999999
Q ss_pred cEEEEecCCCC--e--eeeeeecccCCCCCcceeeeeEEEEEcCC-CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCC
Q 009266 174 LVQHFDLRTGA--A--TELFTCRPIDDRRNYMTVVNLNAIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (538)
Q Consensus 174 ~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (538)
++.||.-.... . ..-........ ....|+.+.|.|. -|..||+++.||+||||+....--+....+...+
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~D-----srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVD-----SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeec-----CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 99999752111 0 01111111111 3447999999985 3567999999999999998765333222221111
Q ss_pred cccCCCCccCCCccceEEEEEcCC---CCEEEEEcCC------eEEEeeccCCCCCCCCCCCCccccccccccCCCCccc
Q 009266 249 DYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
+ ........+..+..|+.|+|. ..+||.+++. .++||......+.
T Consensus 159 ~--~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK------------------------ 212 (361)
T KOG2445|consen 159 Q--NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK------------------------ 212 (361)
T ss_pred h--hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce------------------------
Confidence 1 111122345667889999985 4688988866 7889987654211
Q ss_pred cCCCCCCCCcccCCceeeccccceeeeEEEEecCCC----cEEEEeccCCeEEEeeccCc--------------------
Q 009266 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRIFIWKKKGG-------------------- 375 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~----~~l~~gs~dg~i~iwd~~~~-------------------- 375 (538)
...+..+.+|..+ |+.++| .|+- .+||+++.|| |+||++...
T Consensus 213 ----------w~kva~L~d~~dp--I~di~w-APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 213 ----------WLKVAELPDHTDP--IRDISW-APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ----------eeeehhcCCCCCc--ceeeee-ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 2344566788887 999999 8863 5799999999 999998631
Q ss_pred ceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
+.+..+..|.+.|..+.|.-.|..|++.|.||+||+|...
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2345677899999999999999999999999999999864
No 146
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=7.9e-25 Score=198.38 Aligned_cols=203 Identities=17% Similarity=0.188 Sum_probs=141.2
Q ss_pred CCCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEe-eeeeEEcCCcCcEEEEEEcCCCCEEEEec
Q 009266 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-GIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (538)
Q Consensus 2 ~~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~t~~ 80 (538)
|.-|.+-...+||||+.|..|+||.+..|.-. .+ .+...+.+..-.|-|+.|+|...-|+..+
T Consensus 84 Dl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q----------------~LSape~~~g~~~~~vE~l~fHpTaDgil~s~ 147 (1012)
T KOG1445|consen 84 DLGFSPFADELLATCSRDEPVKIWKLPRGHSQ----------------KLSAPEIDVGGGNVIVECLRFHPTADGILASG 147 (1012)
T ss_pred ccCccccchhhhhcccCCCeeEEEecCCCccc----------------ccCCcceeecCCceEEEEeecccCcCceEEec
Confidence 56688888889999999999999999844321 11 11233444456789999999654455455
Q ss_pred CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC-CcEEEEEc
Q 009266 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-RAHKLAIE 159 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~-~v~~~~~~ 159 (538)
..|.++|||+.+++.+..+ .+|...|.++.|+. +|.+|++++.|..|+|||.+..-... ....+|.+ .=..+.|.
T Consensus 148 a~g~v~i~D~stqk~~~el-~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~pi-Q~te~H~~~rdsRv~w~ 223 (1012)
T KOG1445|consen 148 AHGSVYITDISTQKTAVEL-SGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPI-QTTEGHGGMRDSRVLWA 223 (1012)
T ss_pred cCceEEEEEcccCceeecc-cCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCcc-ccccccccchhheeeec
Confidence 5689999999999998877 89999999999999 99999999999999999987643322 22566754 23456676
Q ss_pred CCCCcEEEEEcCC----CcEEEEecCCCC-eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 160 PGSPHVFYTCGED----GLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 160 ~~~~~~l~s~~~d----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
-+-. .|++.+.+ ..|++||.+... ...++... ....|.--.|.|+.+.+|++|-.+.+|..+.+.
T Consensus 224 Gn~~-rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld---------~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 224 GNWE-RLISTGFTTKRIREVRAYDTRKFGAPVHTLELD---------SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQ 293 (1012)
T ss_pred cchh-hhhhcccchhhheeeeeeeccccCCcceeEEee---------cccceEeeeecCCCceEEEecCCcceEEEEEec
Confidence 6543 34554443 468999987643 33333321 112345556788855556666666777766654
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=2.9e-25 Score=185.49 Aligned_cols=319 Identities=12% Similarity=0.203 Sum_probs=226.5
Q ss_pred EcCCcCcEEEEEEcC-----CCCEEEEecCCCeEEEEECCCCc---eeeeecc-CCCCCeEEEEEeecC--CCceEEEEe
Q 009266 57 LDKHRGCVNTVSFNT-----DGDILISGSDDRRVILWDWKTER---VKLSFHS-GHNDNVFQAKIMPFT--DDRSIVTCA 125 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~-----~g~~l~t~~~d~~i~iw~~~~~~---~~~~~~~-~~~~~v~~l~~~~~~--~~~~l~s~~ 125 (538)
...|..+|..++|++ .-+.+||++.+ .+.||...... .+..+.. .|....+.++|+-.. ...+||.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999985 23577887764 78999875433 2333333 377788889998622 245889999
Q ss_pred CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeee
Q 009266 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
.-|.|+|.|+.+++.... +.+|...|+.|.++|..++++++++.|..||+|++++..++..+..... |...
T Consensus 113 ~~GvIrVid~~~~~~~~~--~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg-------Hrde 183 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKN--YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG-------HRDE 183 (385)
T ss_pred ceeEEEEEecchhhhccc--eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc-------ccCc
Confidence 999999999998877765 8899999999999999999999999999999999999999998876544 5668
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC----C---------CCCCCcccCCCCccCCCccceEEEEEcCC
Q 009266 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST----D---------FGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~---------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 272 (538)
|.++.|+++ +.+|++++.|.+|++|++...+....+ . +..+...+.......-|...|-|+.|-
T Consensus 184 VLSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-- 260 (385)
T KOG1034|consen 184 VLSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-- 260 (385)
T ss_pred EEEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence 999999998 789999999999999999954432111 1 111111222222334466677777775
Q ss_pred CCEEEEEc-CCeEEEeecc-CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE
Q 009266 273 SELLVSYN-DEFIYLFTQD-MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
|.++++-+ ++.|..|..- -......+. .+.. ....+..+.-..........+|
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vk-p~es------------------------~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVK-PPES------------------------ATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccC-CCcc------------------------ceeeeeEeccCccceEEEEEee
Confidence 46777766 6789999862 111100000 0000 0111222332233312334444
Q ss_pred ecCCCcEEEEeccCCeEEEeeccCccee--EEeecC--cceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 351 FGPKCEYVVSGSDCGRIFIWKKKGGELI--RVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 351 ~s~~~~~l~~gs~dg~i~iwd~~~~~~~--~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
.|-+++||.|...|.|++|++....+. .++..+ ...|...+|+.++.+|+....|++|.-|+.
T Consensus 316 -d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 316 -DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred -cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 888999999999999999999887663 223222 257999999999999999999999999985
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.6e-27 Score=215.83 Aligned_cols=258 Identities=17% Similarity=0.300 Sum_probs=218.3
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
|..-+++.....-.++||+.+ .+..|...|.|+..-..++.+++|+.+..+-|
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~---------------------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L 54 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTR---------------------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNL 54 (825)
T ss_pred Ccccccceeeeeeccccccch---------------------------hhhhhhhhhceeeeeccceeeccCCCceeecc
Confidence 344455555566667777765 34568999999998778899999999999999
Q ss_pred EECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEE
Q 009266 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (538)
|.+.....+..+ .+|..+|.+|.|++ ...+|++|+.+|+|++||+...+.+.. +.+|...+.++.|+|-+ .+++
T Consensus 55 ~~i~kp~~i~S~-~~hespIeSl~f~~--~E~LlaagsasgtiK~wDleeAk~vrt--Ltgh~~~~~sv~f~P~~-~~~a 128 (825)
T KOG0267|consen 55 WAIGKPNAITSL-TGHESPIESLTFDT--SERLLAAGSASGTIKVWDLEEAKIVRT--LTGHLLNITSVDFHPYG-EFFA 128 (825)
T ss_pred ccccCCchhhee-eccCCcceeeecCc--chhhhcccccCCceeeeehhhhhhhhh--hhccccCcceeeeccce-EEec
Confidence 998877777765 89999999999999 899999999999999999998877765 99999999999999999 6889
Q ss_pred EEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCC
Q 009266 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (538)
Q Consensus 168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 247 (538)
+|+.|+.+++||++...+...+..+ ...|.++.|+|+ |++++.++.|.+++|||+..+++
T Consensus 129 ~gStdtd~~iwD~Rk~Gc~~~~~s~----------~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~--------- 188 (825)
T KOG0267|consen 129 SGSTDTDLKIWDIRKKGCSHTYKSH----------TRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKL--------- 188 (825)
T ss_pred cccccccceehhhhccCceeeecCC----------cceeEEEeecCC-CceeeccCCcceeeeeccccccc---------
Confidence 9999999999999988888877653 336889999997 78999999999999999887652
Q ss_pred CcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCC
Q 009266 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
T Consensus 189 -------------------------------------------------------------------------------- 188 (825)
T KOG0267|consen 189 -------------------------------------------------------------------------------- 188 (825)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecC
Q 009266 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 406 (538)
...|.+|... +..+.| +|..-++++|+.|++|++|++++.+.+.........|.+++|+|+++.+++|...
T Consensus 189 -----~~ef~~~e~~--v~sle~-hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 189 -----SKEFKSHEGK--VQSLEF-HPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred -----cccccccccc--cccccc-CchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 2445556555 667777 8888899999999999999999999998888778899999999999998888654
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-24 Score=179.72 Aligned_cols=297 Identities=11% Similarity=0.129 Sum_probs=198.4
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEE-EEecCCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDR 83 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~t~~~d~ 83 (538)
.|+.+|+.|+|++.|++|+||++.........+ +| +.+. -+.-+.++|+|+-+-+ ++.-...
T Consensus 93 ~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~-----------~R----~nve--~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 93 AFSSDGKKLATISGDRSIRLWDVRDFENKEHRC-----------IR----QNVE--YDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred EEcCCCceeEEEeCCceEEEEecchhhhhhhhH-----------hh----cccc--CCCceEEEECCCcceEEEEEccCC
Confidence 467799999999999999999998543321111 01 1111 2345789999987544 4455556
Q ss_pred eEEEEECCC---Ccee--------eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 84 RVILWDWKT---ERVK--------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 84 ~i~iw~~~~---~~~~--------~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
++++|.+.. |... ..+...|.-.|..+-..- ++.+|++++.+..|.+|++. ++.+.. +......
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-Gq~L~~--idtnq~~ 230 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-GQLLQS--IDTNQSS 230 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-Cceeee--ecccccc
Confidence 899997643 2221 123345666777776666 88999999999999999998 655544 4445556
Q ss_pred cEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 009266 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 232 (538)
-+..+++|+| +++++++.-.-|++|.+--++--..........+.| |...|..++|+|+ ...+++.+.||+++|||
T Consensus 231 n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG--H~saV~~~aFsn~-S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 231 NYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG--HQSAVLAAAFSNS-STRAVTVSKDGKWRIWD 306 (420)
T ss_pred ccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheecc--chhheeeeeeCCC-cceeEEEecCCcEEEee
Confidence 6778999999 788999998999999874222111111111222334 5558999999997 79999999999999999
Q ss_pred cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
+.-.-.... .|.....-.............++++|+|+.||.+....+++|..+++.....
T Consensus 307 tdVrY~~~q----Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~--------------- 367 (420)
T KOG2096|consen 307 TDVRYEAGQ----DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPE--------------- 367 (420)
T ss_pred ccceEecCC----CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchh---------------
Confidence 864321111 0000000001111112334489999999999999988999999887532221
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
.-..|... |.+++| +++|+++|+++ |..++++.-
T Consensus 368 ----------------------~e~~h~~~--Is~is~-~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 368 ----------------------LEDIHSTT--ISSISY-SSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ----------------------HHHhhcCc--eeeEEe-cCCCcEEeeec-ceeeeeecC
Confidence 12235544 999999 99999999998 677887763
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=9.2e-25 Score=182.10 Aligned_cols=288 Identities=20% Similarity=0.298 Sum_probs=213.6
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCC-------ce-----eeeeccCCCCCeEEEEEeec-----CCCceEEE
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-------RV-----KLSFHSGHNDNVFQAKIMPF-----TDDRSIVT 123 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~-------~~-----~~~~~~~~~~~v~~l~~~~~-----~~~~~l~s 123 (538)
..-...+.|+|+|..|++-+.|..+++|++... .. ...+.-.....|+..+|-+. ++..++++
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 345677899999999999999999999998521 10 11111123456777777631 26778999
Q ss_pred EeCCCcEEEeecccCceeeeeeccccCC---CcEEEEEcCCCCcEEEEEcCCCcEEEEec-CCCCeeeeeeecccCCCCC
Q 009266 124 CAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPHVFYTCGEDGLVQHFDL-RTGAATELFTCRPIDDRRN 199 (538)
Q Consensus 124 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~ 199 (538)
.+.+.-|++||.-+++.........|.. ...+++|+|+|. .|++ +....|+++|+ +.+..-..+...... ..+
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~t~~~~-k~g 205 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKG-KFG 205 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchhhhhcc-ccc
Confidence 9999999999999988766533334443 356899999994 5554 56689999999 555443332211110 011
Q ss_pred cceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE
Q 009266 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (538)
Q Consensus 200 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (538)
..+-+.+++|+|.....+++|+....+-||.-..+. |..+..+|.+.|+.+.|.++|..|.++
T Consensus 206 --q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------------pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 206 --QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------------PLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred --ccceeeeeeccCCCCcceeeecccceeeeEecCCCC---------------ceeeecccCCCeeeEEeccCcCeeccc
Confidence 344688999999877799999999999888877654 456667899999999999999999999
Q ss_pred c--CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE-ecCCCc
Q 009266 280 N--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCE 356 (538)
Q Consensus 280 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~-~s~~~~ 356 (538)
+ +..|..||++.. +.++..+..|... +-..|.| ..|.++
T Consensus 269 aRk~dkIl~WDiR~~-------------------------------------~~pv~~L~rhv~~-TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYS-------------------------------------RDPVYALERHVGD-TNQRILFDLDPKGE 310 (406)
T ss_pred ccCCCeEEEEeehhc-------------------------------------cchhhhhhhhccC-ccceEEEecCCCCc
Confidence 8 458999999864 3445555655542 1223333 268999
Q ss_pred EEEEeccCCeEEEeeccC-cceeEEeecCcceeeEEeecCCCCeEEEeecC
Q 009266 357 YVVSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (538)
Q Consensus 357 ~l~~gs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 406 (538)
+||+|+.+|.|++||++. +..+..+..|...++.++++|--+++|+++..
T Consensus 311 ~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 999999999999999998 77788888899999999999998999998754
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-24 Score=191.88 Aligned_cols=264 Identities=15% Similarity=0.178 Sum_probs=199.7
Q ss_pred cEEEEEEcCCCC-EEEEecCCCeEEEEECCCC--ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 63 CVNTVSFNTDGD-ILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 63 ~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
.|.++.|+.... .+++.+.|..|++|.-... +....- ......-.|++... ...++++|+..+.|+|||++...
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~-k~~gd~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVR-KLTGDNAFCVACAS--QSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceee-ccccchHHHHhhhh--cceeeeccCcCceeeehhhHHHH
Confidence 399999987663 3344466888999974322 121111 11222344444444 45799999999999999998544
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 219 (538)
+. +.+..|...|+++.++-.. .+|++++..|.|.|..+.++.....|... ....|+-+.|+|....+|
T Consensus 113 ~h--r~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~---------sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 113 IH--RFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTID---------SGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred Hh--hhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecC---------CCCeEEEeecccccceee
Confidence 43 4489999999999999887 68999999999999999999887777643 223577899999866788
Q ss_pred EEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEc-CCeEEEeeccCCCCCCC
Q 009266 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNP 297 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~~~d~~~~~~~~~ 297 (538)
.+++.+|.|.+||+.... ........|..+...++|+|... +|++.+ +.+|++||+...
T Consensus 181 ~~asd~G~VtlwDv~g~s--------------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~----- 241 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMS--------------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ----- 241 (673)
T ss_pred EeeccCCeEEEEeccCCC--------------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-----
Confidence 899999999999998764 23455667889999999999664 566666 669999998863
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccC-cc
Q 009266 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GE 376 (538)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~-~~ 376 (538)
.....+.... +...|+| +++|.+|++|+..|.|+.||+.. ..
T Consensus 242 ---------------------------------~s~~~l~y~~---Plstvaf-~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 242 ---------------------------------ASTDRLTYSH---PLSTVAF-SECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred ---------------------------------cccceeeecC---Ccceeee-cCCceEEEeecCCceEEEEecccCCC
Confidence 2223333222 2778998 99999999999999999999975 46
Q ss_pred eeEEeecCcceeeEEeecCCC
Q 009266 377 LIRVIEADRHVVNCIEPHPHS 397 (538)
Q Consensus 377 ~~~~~~~h~~~v~~~~~s~~~ 397 (538)
++.++.+|...|++++|-|.-
T Consensus 285 Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 285 PVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEeeecccceeEEEeeecc
Confidence 789999999999999998764
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=2e-24 Score=185.59 Aligned_cols=328 Identities=18% Similarity=0.231 Sum_probs=219.7
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
....+|+||+.|..|+||.+..+.-- .....+.....|..|...|+++.|+|+|.+||+|+.+|.|.|
T Consensus 24 n~~~~laT~G~D~~iriW~v~r~~~~------------~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 24 NSLNKLATAGGDKDIRIWKVNRSEPG------------GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CcccceecccCccceeeeeeeecCCC------------CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 33449999999999999999865532 111566778899999999999999999999999999999999
Q ss_pred EECC--------C-----C--ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 88 WDWK--------T-----E--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 88 w~~~--------~-----~--~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
|... + . -.+...+.+|...|+.++|+| ++.++++++.|..+++||+..+..... +..|...
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~--~~dh~~y 167 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAI--LDDHEHY 167 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEee--ccccccc
Confidence 9765 2 1 123445588999999999999 999999999999999999999888766 8899999
Q ss_pred cEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 009266 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 232 (538)
|..++|.|-+ +++++-+.|...+++.+...+.+..... ..+.+.++.+. .....++|-
T Consensus 168 vqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~------------~~m~~~~~~~~---------e~~s~rLfh 225 (434)
T KOG1009|consen 168 VQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGL------------DIMPAKAFNER---------EGKSTRLFH 225 (434)
T ss_pred cceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeee------------eEeeecccCCC---------Ccceeeeee
Confidence 9999999998 7889999988777776665444332220 01222223322 112334554
Q ss_pred cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-----Ce-----EEEeeccCCCCCCCCCCCC
Q 009266 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----EF-----IYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----~~-----i~~~d~~~~~~~~~~~~~~ 302 (538)
=.+.+ ...+.++|+|+|.+|++... +. .++|+-....++..
T Consensus 226 DeTlk------------------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~----- 276 (434)
T KOG1009|consen 226 DETLK------------------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA----- 276 (434)
T ss_pred cCchh------------------------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee-----
Confidence 44432 23556889999998877542 12 34444331111100
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 382 (538)
-..++....+++... .....+..... ....|.-|-+-.+|.++ ...|+|||.++..++....
T Consensus 277 -------~lp~~~k~~lavr~~------pVy~elrp~~~----~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~ 338 (434)
T KOG1009|consen 277 -------RLPSPKKPALAVRFS------PVYYELRPLSS----EKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVD 338 (434)
T ss_pred -------ecCCCCcceEEEEee------eeEEEeccccc----cccccccccceEEEEee-cceEEEeccccccceEEEe
Confidence 000000000000000 00011111111 11111123344455555 5679999999988886654
Q ss_pred -cCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 383 -ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 383 -~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
-|-..|+.++|+++|.+|+..|.||...+-.+...++.
T Consensus 339 nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 339 NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 57789999999999999999999999988887776655
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.6e-24 Score=175.19 Aligned_cols=293 Identities=15% Similarity=0.199 Sum_probs=200.0
Q ss_pred EcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
..+|..-|+++.|.+-|+++|||+.|++|+||+..... +.... +.|.+.|..|.|.+..=|+.+|+|+.|++++|
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceee
Confidence 35799999999999999999999999999999965433 22333 78999999999987667999999999999999
Q ss_pred eeccc-------CceeeeeeccccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEEecCCCCeeeeeeecc-cC--CCCCcc
Q 009266 133 AQILE-------RGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRP-ID--DRRNYM 201 (538)
Q Consensus 133 wd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~--~~~~~~ 201 (538)
|.-.. .+.+...++......|+.+.|.|.. ...|++++.||+||||.......+....... .. ..+...
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 97521 2334445577778899999999953 2578999999999999876543332211100 00 000011
Q ss_pred eeeeeEEEEEcCC--CCcEEEEEeCC-----CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-C
Q 009266 202 TVVNLNAIAIDPR--NANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-S 273 (538)
Q Consensus 202 ~~~~v~~~~~~~~--~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~ 273 (538)
+..+..|+.|+|. ...+||+|+.+ +.++||........ ......+..|..+|+.++|.|+ |
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----------w~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----------WLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----------eeeehhcCCCCCcceeeeeccccC
Confidence 3346788999874 23578888766 57888887654210 0112233367899999999997 3
Q ss_pred ---CEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE
Q 009266 274 ---ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 274 ---~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
.+||+++.+.|+||.+........-...... ..........+..+.+|... |+.+.|
T Consensus 237 r~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~------------------~~~~~l~v~~vs~~~~H~~~--VWrv~w 296 (361)
T KOG2445|consen 237 RSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAP------------------DLMTDLPVEKVSELDDHNGE--VWRVRW 296 (361)
T ss_pred CceeeEEEeecCcEEEEEEeeccchhhhhcccCC------------------CCccccceEEeeeccCCCCc--eEEEEE
Confidence 4788888555999998753211100000000 00000112344567788876 999999
Q ss_pred ecCCCcEEEEeccCCeEEEeeccC---cceeEEee
Q 009266 351 FGPKCEYVVSGSDCGRIFIWKKKG---GELIRVIE 382 (538)
Q Consensus 351 ~s~~~~~l~~gs~dg~i~iwd~~~---~~~~~~~~ 382 (538)
.-.|..|++.+.||.||+|...- .++...++
T Consensus 297 -NmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 297 -NMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred -eeeeeEEeecCCCceeeehhhhhhhhheeeeEEe
Confidence 89999999999999999998632 34444444
No 154
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=8.3e-25 Score=177.22 Aligned_cols=305 Identities=14% Similarity=0.089 Sum_probs=205.8
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
+...|++|.+.|+++.|-.+++ |.+|..-|.|++|.+++.+.+..+...|...|+.+.-.| + ..|.+-+.|+.+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceEEE
Confidence 4577889999999999988775 889999999999999999887777446788999999887 5 78999999999999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEcCCC-----C---cEEEEEcCCCc-EEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIEPGS-----P---HVFYTCGEDGL-VQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~---~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
|.+..+..+.. |.-.++++.|.+-. + .+++.-+.... +++-|......+....... ....
T Consensus 82 w~ia~s~~i~i-----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~------~~Kl 150 (323)
T KOG0322|consen 82 WTIAYSAFISI-----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSE------RSKL 150 (323)
T ss_pred EEccCcceEEE-----eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchh------cccc
Confidence 99987655443 33344555554422 1 11121111110 1222211111111111100 0122
Q ss_pred eeeEEEEEcCCC--CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-
Q 009266 204 VNLNAIAIDPRN--ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN- 280 (538)
Q Consensus 204 ~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~- 280 (538)
+.+.+..+.... .-++++|.++|.|.+||+.++...-. +.+ ..........|..+|.++.|.+.-..=++++
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~--~~~---~~kv~~~~ash~qpvlsldyas~~~rGisgga 225 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ--LPQ---SSKVESPNASHKQPVLSLDYASSCDRGISGGA 225 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec--ccc---ccccccchhhccCcceeeeechhhcCCcCCCc
Confidence 345565543322 23567888999999999998732211 111 0111223345778999999987544434444
Q ss_pred CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE
Q 009266 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (538)
Q Consensus 281 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~ 360 (538)
...+..|++.......++ ...+.-... .+..+.. -|+++.+|+
T Consensus 226 ~dkl~~~Sl~~s~gslq~----------------------------------~~e~~lknp--Gv~gvrI-RpD~KIlAT 268 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQI----------------------------------RKEITLKNP--GVSGVRI-RPDGKILAT 268 (323)
T ss_pred cccceeeeeccccCcccc----------------------------------cceEEecCC--CccceEE-ccCCcEEee
Confidence 558889988754222221 111111111 1677777 899999999
Q ss_pred eccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 361 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
++.|++||||+.++..++..++-|...|++++|+|+.+++|+++.|++|.+|++
T Consensus 269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999999999986
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=182.80 Aligned_cols=272 Identities=20% Similarity=0.295 Sum_probs=196.6
Q ss_pred eeeEEcCCcCcEEEEEEcCCC--CEEEEecCCCeEEEEECCC----------------CceeeeeccCCCCCeEEEEEee
Q 009266 53 IYAKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKT----------------ERVKLSFHSGHNDNVFQAKIMP 114 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g--~~l~t~~~d~~i~iw~~~~----------------~~~~~~~~~~~~~~v~~l~~~~ 114 (538)
+.....+|.+.|+.+.-++-+ .+.|+-+..|.|+||++.. .+++.++ .+|...=+.|+|||
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccc
Confidence 334556789999999988865 4566667889999999742 2345666 78999999999999
Q ss_pred cCCCceEEEEeCCCcEEEeecccCcee-eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecc
Q 009266 115 FTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP 193 (538)
Q Consensus 115 ~~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 193 (538)
... ..|++|.--+.|++|...++... -...+.+|+..|-.|+|+|....+|++|+-||+|+|||+|.+.....+....
T Consensus 222 ~~~-g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 222 IKT-GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred ccc-cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence 533 46788888899999999887653 2345778999999999999988999999999999999999984433332211
Q ss_pred cCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC
Q 009266 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (538)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 273 (538)
|.+.|+.|.|+.. ..+||+|+.+|+++|||+|+.+. + .+...+..|..+|+++.|+|..
T Consensus 301 --------h~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~------~------~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 301 --------HNSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKS------G------QPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred --------cCCceeeEEccCC-cceeeecCCCceEEEEEhhhccC------C------CcceeEEeccCCeeEEEecccc
Confidence 5558999999987 55999999999999999998763 1 2345566789999999999953
Q ss_pred --CEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEe
Q 009266 274 --ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (538)
Q Consensus 274 --~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 351 (538)
.+++++.+++|.+||+....-......... ......+.+.+.-|.+...+..|.|.
T Consensus 360 ~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~----------------------~~L~dlPpQLLFVHqGQke~KevhWH 417 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDLSVEADEEEIDQEAA----------------------EGLQDLPPQLLFVHQGQKEVKEVHWH 417 (440)
T ss_pred CceEEeccCCCcEEEEEeeccCChhhhccccc----------------------cchhcCCceeEEEecchhHhhhheec
Confidence 344555577999999975432111000000 00012344556666665568888883
Q ss_pred cCCCcEEEEeccCCeEEEe
Q 009266 352 GPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 352 s~~~~~l~~gs~dg~i~iw 370 (538)
....-+|++.+.+| +.||
T Consensus 418 ~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 418 RQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cCCCCeEEEecccc-eeEE
Confidence 33445888888777 3344
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=3.5e-24 Score=186.86 Aligned_cols=290 Identities=18% Similarity=0.192 Sum_probs=205.6
Q ss_pred CCCCCCC-ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC-CCEEEEecC
Q 009266 4 ASNNNNN-KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSD 81 (538)
Q Consensus 4 a~~~~~~-~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~ 81 (538)
+|.|... +++|+|..-|.|-+|++.+.+.- ..-+..+..|.++|.+|.|+|. -..+++.|.
T Consensus 193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-----------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-----------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred EecccCcceEEEEccCCCcEEEEecCCCCCc-----------------cCceEEeccCCccccceEecCCChhheeeecc
Confidence 5666666 78999999999999999632221 1225668899999999999994 468889999
Q ss_pred CCeEEEEECCCCceeeeeccC--CCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 82 DRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
||+|++-|++.+... .++.. -...+..+.|+. +...++.+..=|.+.+||++++..... .+.-|...|+.|+++
T Consensus 256 DGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~f~~iD~R~~~s~~~-~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGNFNVIDLRTDGSEYE-NLRLHKKKITSVALN 331 (498)
T ss_pred CceeeeeeecchhhH-HHhhcCccceeeeeccccC--CCccEEEeecccceEEEEeecCCccch-hhhhhhcccceeecC
Confidence 999999999876532 22222 444677788887 777888888778999999998766332 266688899999999
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCCeeee--eeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcc
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGAATEL--FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
|..+.+|+|++.|++++|||++....... +.. ..|...|.++.|+|.+++ |++.+.|..|+|||..-..
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst--------~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLST--------LPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceec--------ccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccc
Confidence 99999999999999999999997654443 111 115568999999999766 9999999999999985110
Q ss_pred ccCCCCCCCCCcccCCCCccCCC-----ccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccc
Q 009266 238 WDGSTDFGQPADYFCPPNLIGDE-----QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (538)
. ..++...+.|. --.....+|.|+..+++++. -..|-||+-..++
T Consensus 403 --------a---~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q------------------ 453 (498)
T KOG4328|consen 403 --------A---KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ------------------ 453 (498)
T ss_pred --------c---cCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE------------------
Confidence 0 00111112111 12344578999999999988 4479999876532
Q ss_pred cCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc-EEEEeccCCeEEEeecc
Q 009266 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~~gs~dg~i~iwd~~ 373 (538)
.+..+..... .+|.++.-++|-+. +++.++..|.|+||--+
T Consensus 454 --------------------~v~el~~P~~-~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 454 --------------------MVCELHDPES-STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred --------------------EeeeccCccc-cccccceeecccccceeccCCccceEEEEecC
Confidence 1122221111 13555554589888 55555667899998754
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=183.50 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=187.7
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC-CCEEEEecCCCeEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVIL 87 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~d~~i~i 87 (538)
+..++++-+..|.|+||++.. .+.....+-+. -.....+++.++.+|.+.=.+|+|||- -..|+||.--+.|++
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~~~---~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~l 238 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAP--HLNALSEPGLE---VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHL 238 (440)
T ss_pred CcceeeeecccCcEEEEEchh--hhhhhcCcccc---ccccccCceEEecccCccceeeecccccccccccCccccceEe
Confidence 455678888999999999862 11111111000 011445788999999999999999993 235888877788999
Q ss_pred EECCCCceee--eeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcE
Q 009266 88 WDWKTERVKL--SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 88 w~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
|...+|.-.. .-+.+|+..|-.|+|||. ....|++|+.||+|+|||++.+..........|...|+.|.|+..-+ +
T Consensus 239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt-E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-l 316 (440)
T KOG0302|consen 239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPT-EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-L 316 (440)
T ss_pred eeeccCceeecCccccccccchhhhccCCc-cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-e
Confidence 9998876432 123579999999999993 56789999999999999999885555555688999999999999885 9
Q ss_pred EEEEcCCCcEEEEecCCC---CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC-
Q 009266 166 FYTCGEDGLVQHFDLRTG---AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS- 241 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~- 241 (538)
|++|+.+|+++|||+++- +++..|+. |..+|++|.|+|.....|++++.|.+|.|||+....-...
T Consensus 317 LasG~DdGt~~iwDLR~~~~~~pVA~fk~----------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 317 LASGGDDGTLSIWDLRQFKSGQPVATFKY----------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eeecCCCceEEEEEhhhccCCCcceeEEe----------ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999999999999865 44555655 4558999999998788999999999999999975432110
Q ss_pred --CCCCCCCcccCCCCccCC-CccceEEEEEcCCCC-EEEEEcCCeEEEee
Q 009266 242 --TDFGQPADYFCPPNLIGD-EQVGITGLAFSDQSE-LLVSYNDEFIYLFT 288 (538)
Q Consensus 242 --~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~-~l~~~~~~~i~~~d 288 (538)
..... +....++.++-+ ....+.-+.|+++-. +|++.+-+.+.||.
T Consensus 387 ~~~a~~~-L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 387 DQEAAEG-LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred ccccccc-hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 00000 111122222222 355788899999643 45555544455554
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.8e-24 Score=185.99 Aligned_cols=254 Identities=17% Similarity=0.244 Sum_probs=187.6
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccce---EEeeeeeEEcCCcCcEEEEEEcCC-CCEEEEecCCCe
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLV---LRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRR 84 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~d~~ 84 (538)
.|+++|.|+.+..|.|||+.--..+ +..+..++.... ..-+.-....+|+..|..|+|+.. ...||+||.|.+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v---~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAV---LPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred CcceEEEeccCceeEEecccccccc---ccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 4779999999999999998721111 111111110000 000112234579999999999875 468999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|++||+.+|++...+ ..|...|.++.|+|. ...+|++|+.|++|++.|.+....... .-...+.|-.++|.|..++
T Consensus 268 V~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~--~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSI-THHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGK--EWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred EEEEEcCCCCcceeh-hhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCc--eEEeccceEEEEecCCCce
Confidence 999999999997777 689999999999994 788999999999999999985333222 1224577999999999989
Q ss_pred EEEEEcCCCcEEEEecCCC-CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCC
Q 009266 165 VFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 243 (538)
.++++..||+|+-+|+|+. +++.+++.| ..+|.+|++++....++++++.++.|++|++........
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AH----------d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v-- 411 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAH----------DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV-- 411 (463)
T ss_pred eEEEecCCceEEeeecCCCCCceeEEEec----------cCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc--
Confidence 9999999999999999987 677777764 448999999998889999999999999999976431000
Q ss_pred CCCCCcccCCCCccCCCccceEEEEEcCCCCE-EEEEc-CCeEEEeeccCC
Q 009266 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~-~~~i~~~d~~~~ 292 (538)
....-.-+...|+++.|+-.+ |+.++ .+.++||++.+.
T Consensus 412 -----------~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 412 -----------KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred -----------ccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 000001133677888887554 45555 446999999875
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.2e-25 Score=213.92 Aligned_cols=290 Identities=15% Similarity=0.209 Sum_probs=219.7
Q ss_pred EEEEEcCCCC-EEEEe----------cCCCeEEEEECC--CCc----eeeeeccCCCCCeEEEEEeecCCCce----EEE
Q 009266 65 NTVSFNTDGD-ILISG----------SDDRRVILWDWK--TER----VKLSFHSGHNDNVFQAKIMPFTDDRS----IVT 123 (538)
Q Consensus 65 ~~~~~s~~g~-~l~t~----------~~d~~i~iw~~~--~~~----~~~~~~~~~~~~v~~l~~~~~~~~~~----l~s 123 (538)
-.++|+|.+. +||+| +.+.++-||.+. ... .+..+ .-....+.|+|.+ .+.. ||.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~--~g~~~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGS--YGSHSHGLIAG 85 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecc--cCCCccceeec
Confidence 3578999886 55554 334566677553 222 22222 2345788999998 5544 888
Q ss_pred EeCCCcEEEeecccC----ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCC
Q 009266 124 CAADGQVRHAQILER----GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (538)
Q Consensus 124 ~~~dg~v~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (538)
|..||.|.+|+...- ..........|++.|..+.|++..+++|++|+.+|.|.|||+...+....+...
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~------- 158 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ------- 158 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC-------
Confidence 899999999998652 112223467899999999999999889999999999999999875544333211
Q ss_pred cceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-CEEEE
Q 009266 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVS 278 (538)
Q Consensus 200 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~ 278 (538)
.....|.+++|+....++|++++..|++.|||+|..+.+- ..........+..++|+|+. ..|++
T Consensus 159 -~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii-------------~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 159 -APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII-------------KLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred -CCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc-------------ccccCCCccceeeeeeCCCCceeeee
Confidence 1344799999998877899999999999999999875211 11111123568899999986 34555
Q ss_pred Ec-CC---eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCC
Q 009266 279 YN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (538)
Q Consensus 279 ~~-~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~ 354 (538)
++ ++ .|.+||++.. ...++++.+|... |.++.|...+
T Consensus 225 As~dd~~PviqlWDlR~a-------------------------------------ssP~k~~~~H~~G--ilslsWc~~D 265 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFA-------------------------------------SSPLKILEGHQRG--ILSLSWCPQD 265 (1049)
T ss_pred ecCCCCCceeEeeccccc-------------------------------------CCchhhhcccccc--eeeeccCCCC
Confidence 55 33 5999998864 4567888999987 9999994445
Q ss_pred CcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCCCc
Q 009266 355 CEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 355 ~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~~ 418 (538)
.++|++++.|++|.+|+.++++.+..+......+..+.|+|... +++.++.+|.|.|+.+.+..
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 58999999999999999999999999998888999999999888 88999999999999998654
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.4e-23 Score=189.00 Aligned_cols=290 Identities=13% Similarity=0.132 Sum_probs=216.9
Q ss_pred eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEE
Q 009266 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (538)
Q Consensus 99 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 178 (538)
+..+|.+.|.+|...| .|.+|++|+.||+|+||.+.++.++....+. +.|.||+|+|.+...++++.....+.|.
T Consensus 395 vyrGHtg~Vr~iSvdp--~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDP--SGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eEeccCCeEEEEEecC--CcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecCceEEe
Confidence 3489999999999999 9999999999999999999999999875554 4799999999876555555555557776
Q ss_pred ecCCCCeeee------eeec--------------cc--CCCC-----CcceeeeeEEEEEcCCCCcEEEEEeCC---CeE
Q 009266 179 DLRTGAATEL------FTCR--------------PI--DDRR-----NYMTVVNLNAIAIDPRNANLFAVAGSD---EYT 228 (538)
Q Consensus 179 d~~~~~~~~~------~~~~--------------~~--~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v 228 (538)
+..-|..+.. +... .. .... ...+...|+.+.|+.. |.+|++...+ ..|
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPDSGNKSV 548 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccCCCcceE
Confidence 6544421110 0000 00 0000 0124557889999997 7888887653 578
Q ss_pred EEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCcccccc
Q 009266 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (538)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (538)
.|+.+...+. +..+....+.|.++.|+|...+|++++...|+||++..
T Consensus 549 liHQLSK~~s---------------Q~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k----------------- 596 (733)
T KOG0650|consen 549 LIHQLSKRKS---------------QSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK----------------- 596 (733)
T ss_pred EEEecccccc---------------cCchhhcCCceeEEEecCCCceEEEEeccceEEEehhH-----------------
Confidence 8999887652 12222335689999999999999999999999999876
Q ss_pred ccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc-ceeEEeecCcce
Q 009266 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHV 387 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~-~~~~~~~~h~~~ 387 (538)
....+.+..... .|..++. +|.|.-|+.|+.++.+..||+.-. ++.+++..|...
T Consensus 597 ---------------------qelvKkL~tg~k--wiS~msi-hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a 652 (733)
T KOG0650|consen 597 ---------------------QELVKKLLTGSK--WISSMSI-HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA 652 (733)
T ss_pred ---------------------HHHHHHHhcCCe--eeeeeee-cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh
Confidence 233333333333 3888888 999999999999999999999754 678899999999
Q ss_pred eeEEeecCCCCeEEEeecCCceEEecCC-------CC---cccccCcccee----eeecc--cCc-eeeeccCCCCCcee
Q 009266 388 VNCIEPHPHSTVLASSGIESDIKILTPN-------AA---DRATLPTNIEQ----VLIPD--HIR-WFALGDDDDGDYYF 450 (538)
Q Consensus 388 v~~~~~s~~~~~l~s~~~dg~v~vw~~~-------~~---~~~~~~~~~~~----~~~~~--~~~-~l~s~~~d~~~~~~ 450 (538)
+++++|++.-+++++|+.||++.|+.-. +. .+..+.+|... |+.+. |.. ||++++.+++...|
T Consensus 653 vr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 653 VRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999999999999999999998532 22 22456677655 55444 666 99999999987665
No 161
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1e-25 Score=207.05 Aligned_cols=224 Identities=20% Similarity=0.348 Sum_probs=192.9
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
..+.+++|+.+..+.||.+..-.. ...|.+|..+|.||.|++...+|++|+.+|+|++|
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~---------------------i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNA---------------------ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVW 97 (825)
T ss_pred cceeeccCCCceeeccccccCCch---------------------hheeeccCCcceeeecCcchhhhcccccCCceeee
Confidence 346788999998899998863332 24589999999999999999999999999999999
Q ss_pred ECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEE
Q 009266 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (538)
|+..++.++++ .+|...+.+|.|+| -+.+.++|+.|+.+++||++...+... +.+|...|.++.|+|+| .+++.
T Consensus 98 DleeAk~vrtL-tgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~--~~s~~~vv~~l~lsP~G-r~v~~ 171 (825)
T KOG0267|consen 98 DLEEAKIVRTL-TGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHT--YKSHTRVVDVLRLSPDG-RWVAS 171 (825)
T ss_pred ehhhhhhhhhh-hccccCcceeeecc--ceEEeccccccccceehhhhccCceee--ecCCcceeEEEeecCCC-ceeec
Confidence 99999988877 89999999999999 899999999999999999997777765 78899999999999999 79999
Q ss_pred EcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCC
Q 009266 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (538)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (538)
++.|.+++|||+..|+....|..| ...+.++.|+|. ..++++|+.|++|++|++++......
T Consensus 172 g~ed~tvki~d~~agk~~~ef~~~----------e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s------- 233 (825)
T KOG0267|consen 172 GGEDNTVKIWDLTAGKLSKEFKSH----------EGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISS------- 233 (825)
T ss_pred cCCcceeeeecccccccccccccc----------cccccccccCch-hhhhccCCCCceeeeeccceeEEeec-------
Confidence 999999999999999999888754 347889999997 78999999999999999998765333
Q ss_pred cccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEE
Q 009266 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~ 285 (538)
.......|.+++|+|+++.+++|....+.
T Consensus 234 --------~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 234 --------GKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred --------cCCccCCceeeeecCCceeeecCchhhhh
Confidence 12235689999999999988887654433
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.9e-24 Score=178.32 Aligned_cols=291 Identities=15% Similarity=0.181 Sum_probs=199.1
Q ss_pred ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC--CCCEEEEecCCCeEEEE
Q 009266 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDRRVILW 88 (538)
Q Consensus 11 ~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~t~~~d~~i~iw 88 (538)
.++|++...|.|+|||..||+.+ ..+++|...++.++|.. ....+.+|+.||+||+|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---------------------~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---------------------EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---------------------heecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 56899999999999999998875 67899999999999987 45789999999999999
Q ss_pred ECCCCceeeeec-cCCC-CCeEEEEEeecCCCceEEEEeC----CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 89 DWKTERVKLSFH-SGHN-DNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 89 ~~~~~~~~~~~~-~~~~-~~v~~l~~~~~~~~~~l~s~~~----dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
|+++.....++. .++. .+..+++... .++.+++|.. +-.|.+||++..+.........|...|+++.|+|..
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nc--k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNC--KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccC--cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 998876655543 3444 4666777765 6777777753 678999999988774444567899999999999999
Q ss_pred CcEEEEEcCCCcEEEEecCCCCe----eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccc
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAA----TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 238 (538)
+++|++|+.||.|.|||+..... ..++. +...|.++.|...+-..|.+-+...+..+|++..+..
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-----------~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-----------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHHhhc-----------ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 99999999999999999986532 22222 4457999999986434688888899999999998763
Q ss_pred cCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE-EEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCC
Q 009266 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
... +..|........... ....+.......+...+ +.++ .++..++-+......
T Consensus 247 ~~~--~~~~~~~~~d~r~~~-~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~--------------------- 302 (376)
T KOG1188|consen 247 ETW--LENPDVSADDLRKED-NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSG--------------------- 302 (376)
T ss_pred hhc--ccCccchhhhHHhhh-hhhheeecccCCCcceEEEeccccCceeEEEeeecccc---------------------
Confidence 221 111100000000000 01111111111223333 3333 344444443321110
Q ss_pred ccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
.....+..+.++... .|.++.| ...+.++.+|+.||.+.+|..
T Consensus 303 -----------~~~~~~a~l~g~~~e-iVR~i~~-~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 303 -----------SLLTEPAILQGGHEE-IVRDILF-DVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred -----------cccCccccccCCcHH-HHHHHhh-hcccceeeccCCCceEEEEec
Confidence 113345566663332 2778887 788899999999999999996
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.4e-24 Score=188.67 Aligned_cols=252 Identities=17% Similarity=0.237 Sum_probs=194.7
Q ss_pred EeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 009266 14 RTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93 (538)
Q Consensus 14 ~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~ 93 (538)
++.+.|..|++|.-. |+.. .++.+..+.+. .-.|++......|+++|+..+.|+|||++ .
T Consensus 51 as~~gdk~~~~~~K~-g~~~----------------~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~ 110 (673)
T KOG4378|consen 51 ASMAGDKVMRIKEKD-GKTP----------------EVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR-A 110 (673)
T ss_pred eecCCceeEEEeccc-CCCC----------------ccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH-H
Confidence 334567788888655 4321 22334444443 23344444445899999999999999999 5
Q ss_pred ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeecccc-CCCcEEEEEcCCCCcEEEEEcCC
Q 009266 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-QGRAHKLAIEPGSPHVFYTCGED 172 (538)
Q Consensus 94 ~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d 172 (538)
+.+++++..|...|+++.|+- ...+||+++..|.|.|..+.++..... +... ...|+-+.|+|..+.+|.+++.+
T Consensus 111 kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt~--f~~~sgqsvRll~ys~skr~lL~~asd~ 186 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTTT--FTIDSGQSVRLLRYSPSKRFLLSIASDK 186 (673)
T ss_pred HHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEEecccCccccc--eecCCCCeEEEeecccccceeeEeeccC
Confidence 666777799999999999998 899999999999999999988765443 3322 34567899999988899999999
Q ss_pred CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccC
Q 009266 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (538)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 252 (538)
|.|.+||+....++..+.. .|..+...|+|+|.+..+|++.+.|..|.+||++..+....+.+
T Consensus 187 G~VtlwDv~g~sp~~~~~~---------~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-------- 249 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASE---------AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-------- 249 (673)
T ss_pred CeEEEEeccCCCcccchhh---------hccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--------
Confidence 9999999988776544331 16668899999999999999999999999999997664333222
Q ss_pred CCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCccc
Q 009266 253 PPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (538)
Q Consensus 253 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
..+...++|+++|.+|++|+ .|.|+.||++.. ..
T Consensus 250 --------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~-------------------------------------k~ 284 (673)
T KOG4378|consen 250 --------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRST-------------------------------------KA 284 (673)
T ss_pred --------cCCcceeeecCCceEEEeecCCceEEEEecccC-------------------------------------CC
Confidence 45678999999999999998 679999999875 45
Q ss_pred CCceeeccccceeeeEEEEecCC
Q 009266 332 APQVYKGHRNCVTVKGVNFFGPK 354 (538)
Q Consensus 332 ~~~~~~~~~~~~~i~~v~~~s~~ 354 (538)
++..+..|... |++++| -|.
T Consensus 285 Pv~v~sah~~s--Vt~vaf-q~s 304 (673)
T KOG4378|consen 285 PVAVRSAHDAS--VTRVAF-QPS 304 (673)
T ss_pred CceEeeecccc--eeEEEe-eec
Confidence 67778888887 888888 444
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=176.88 Aligned_cols=290 Identities=13% Similarity=0.153 Sum_probs=201.6
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC-CC
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GR 152 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~ 152 (538)
..+|++-..|.|+||+..+++.+..+ +++...++.++|........+.+|+.||+|++||++............+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 56888888999999999999988888 89999999999986223567899999999999999988877766666666 56
Q ss_pred cEEEEEcCCCCcEEEEEcC----CCcEEEEecCCCCe-eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCe
Q 009266 153 AHKLAIEPGSPHVFYTCGE----DGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 227 (538)
..+++..-.+ +++++|.. +-.|.+||+|..+. +..+.- +|...|++++|+|.+.++|++|+.||.
T Consensus 120 f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e---------SH~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 120 FICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNE---------SHNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred ceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhh---------hccCcceeEEecCCCCCeEEeecccce
Confidence 7777776555 67777653 56799999998776 433321 155589999999999999999999999
Q ss_pred EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC--CEEEEEcCCeEEEeeccCCCCCCCCCCCCccc
Q 009266 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (538)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 305 (538)
|.|||+....... .....-.+...|.++.|..++ ++.+........+|++..+.....++......
T Consensus 190 vnlfD~~~d~EeD------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~ 257 (376)
T KOG1188|consen 190 VNLFDTKKDNEED------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA 257 (376)
T ss_pred EEeeecCCCcchh------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence 9999998753211 111122346679999999988 65555667899999998875433322110000
Q ss_pred cccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc-CCeEEEeecc---C---ccee
Q 009266 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK---G---GELI 378 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~-dg~i~iwd~~---~---~~~~ 378 (538)
.......+...+..... ..+...++.++. -++..++-+. + .+.+
T Consensus 258 ----------------------------~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~ 308 (376)
T KOG1188|consen 258 ----------------------------DDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP 308 (376)
T ss_pred ----------------------------hhHHhhhhhhheeeccc-CCCcceEEEeccccCceeEEEeeecccccccCcc
Confidence 00000001001222211 223334444433 4555544432 2 3455
Q ss_pred EEeec-CcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 379 RVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 379 ~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
..+.+ |...|+++.|...+.+|.|||.||.|.+|...
T Consensus 309 a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 309 AILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 66776 66788999999999999999999999999953
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.2e-23 Score=178.99 Aligned_cols=286 Identities=14% Similarity=0.173 Sum_probs=203.3
Q ss_pred EEEEcCCCCEEEEecCC---Ce--EEEEECCCCceeeeeccCC----CCCeEEEEEeec-----CCCceEEEEeCCCcEE
Q 009266 66 TVSFNTDGDILISGSDD---RR--VILWDWKTERVKLSFHSGH----NDNVFQAKIMPF-----TDDRSIVTCAADGQVR 131 (538)
Q Consensus 66 ~~~~s~~g~~l~t~~~d---~~--i~iw~~~~~~~~~~~~~~~----~~~v~~l~~~~~-----~~~~~l~s~~~dg~v~ 131 (538)
-+..-|...+|+++-.. .. |+||+-..... + ..| .....|++|.-. ..|+++|.|+.+..|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl---Y-vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENL---Y-VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcce---e-EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 45566756666665332 23 45555332111 1 112 123356666542 2468999999999999
Q ss_pred EeecccCcee-------------------eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeec
Q 009266 132 HAQILERGGV-------------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (538)
Q Consensus 132 vwd~~~~~~~-------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 192 (538)
|||+.-...+ ....-.+|+..|..|+|+..-.++|++|+.|.+|++||+.++++...+..
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~- 284 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH- 284 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh-
Confidence 9998532211 01112368999999999998889999999999999999999999988874
Q ss_pred ccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC
Q 009266 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (538)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 272 (538)
+...|.++.|+|..+.+|++|+.|++|+++|.|...... ..+ ...+.|..++|.|.
T Consensus 285 ---------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~-------------~~w--k~~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 285 ---------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG-------------KEW--KFDGEVEKVAWDPH 340 (463)
T ss_pred ---------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccC-------------ceE--EeccceEEEEecCC
Confidence 344899999999989999999999999999999632110 011 12567999999997
Q ss_pred CCE--EEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE
Q 009266 273 SEL--LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 273 ~~~--l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
... +++..+|.++-+|++.. .+++.+++.|... |.++++
T Consensus 341 se~~f~~~tddG~v~~~D~R~~-------------------------------------~~~vwt~~AHd~~--ISgl~~ 381 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNP-------------------------------------GKPVWTLKAHDDE--ISGLSV 381 (463)
T ss_pred CceeEEEecCCceEEeeecCCC-------------------------------------CCceeEEEeccCC--cceEEe
Confidence 654 33333779999999874 5678889999997 889998
Q ss_pred ecCCCcEEEEeccCCeEEEeeccCcce--eEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCCCcc
Q 009266 351 FGPKCEYVVSGSDCGRIFIWKKKGGEL--IRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 351 ~s~~~~~l~~gs~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+.....+|++++.++.|++|++..-.+ +..-...-+...|+++.|+-. +||.|+..+.++||++.+...
T Consensus 382 n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 382 NIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 555566899999999999999864333 211111124467778888766 678888888899999987643
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=3.6e-22 Score=182.39 Aligned_cols=269 Identities=17% Similarity=0.215 Sum_probs=199.8
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.|.|+|..|+.+.. ..+.|||...|.++ +++++|+..|.|++|+.+|+.+|+|+.|..
T Consensus 19 afkPDGsqL~lAAg-~rlliyD~ndG~ll---------------------qtLKgHKDtVycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 19 AFKPDGTQLILAAG-SRLLVYDTSDGTLL---------------------QPLKGHKDTVYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred EECCCCceEEEecC-CEEEEEeCCCcccc---------------------cccccccceEEEEEEccCCceeccCCCcee
Confidence 35566666665553 47999999999885 789999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|.||+-+- +-+.+ -.|...|.|+.|+| -...|++|+.. ..-+|......... .....+|.+++|..+| +
T Consensus 77 VI~W~~kl-EG~Lk--YSH~D~IQCMsFNP--~~h~LasCsLs-dFglWS~~qK~V~K----~kss~R~~~CsWtnDG-q 145 (1081)
T KOG1538|consen 77 VIIWTSKL-EGILK--YSHNDAIQCMSFNP--ITHQLASCSLS-DFGLWSPEQKSVSK----HKSSSRIICCSWTNDG-Q 145 (1081)
T ss_pred EEEecccc-cceee--eccCCeeeEeecCc--hHHHhhhcchh-hccccChhhhhHHh----hhhheeEEEeeecCCC-c
Confidence 99998542 22233 47999999999999 88899999863 57789876433221 1234578899999999 7
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC----cEEEEEeCCCeEEEEEcCCccccC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA----NLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
+|+.|-.+|+|.|-+- +++....+..+.. ...+|.+++|+|..+ ..+++.....++.+|.+......+
T Consensus 146 ylalG~~nGTIsiRNk-~gEek~~I~Rpgg-------~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 146 YLALGMFNGTISIRNK-NGEEKVKIERPGG-------SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred EEEEeccCceEEeecC-CCCcceEEeCCCC-------CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc
Confidence 9999999999999864 4444444433222 455899999999632 367888888888888876543211
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccc
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
. ..-.-...|+.+.|+|.++..|+ ++.+.+|...
T Consensus 218 ~----------------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~----------------------------- 252 (1081)
T KOG1538|consen 218 D----------------RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD----------------------------- 252 (1081)
T ss_pred c----------------ccCCCCchhheeccCCcEEEEccCCCceEEEeec-----------------------------
Confidence 1 00123457889999999987776 6678888644
Q ss_pred cCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
+..+.++..... .|+.|+. .|++++++.|+.||+|.-|++
T Consensus 253 ----------GvrLGTvg~~D~--WIWtV~~-~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 253 ----------GVRLGTVGEQDS--WIWTVQA-KPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ----------CeEEeeccccce--eEEEEEE-ccCCceEEEEEccCeeehhhh
Confidence 223334444333 4999998 999999999999999999887
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.8e-24 Score=189.34 Aligned_cols=305 Identities=14% Similarity=0.213 Sum_probs=211.3
Q ss_pred ceEEeeccCCceEEe--eeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 11 KRARTSVDKALVDVW--LRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 11 ~~l~t~~~d~~v~iw--d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
+.+++...+...++| ++. +-.+...|-............+.+..+++.|...|+.++|.|....|++++.+|+|++|
T Consensus 243 ~~~~g~d~~l~~~l~~~tla-~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W 321 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLA-GLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW 321 (577)
T ss_pred CccccCchHHHHhhcccchh-cccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence 446666777888888 554 33333322211111122345566677999999999999999999999999999999999
Q ss_pred ECCC--------CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc--------eeeeeeccccCCC
Q 009266 89 DWKT--------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG--------GVETKLLGKHQGR 152 (538)
Q Consensus 89 ~~~~--------~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~--------~~~~~~~~~~~~~ 152 (538)
+++. -+++.+| .+|.++|.|+++.+ ++..+++|+.||+|+.|++.... .+....+.+|+..
T Consensus 322 nLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~--n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda 398 (577)
T KOG0642|consen 322 NLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPS--NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA 398 (577)
T ss_pred hhcccCCccccceeeeEEE-ecccCceEEEEecC--CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc
Confidence 9932 1346666 89999999999999 99999999999999999875221 1223457899999
Q ss_pred cEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 009266 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 232 (538)
|+.+++++.. ..|++++.||++++|....... .++..... .....++.+-.....+.++.. .+..+.
T Consensus 399 vw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e--------~g~Plsvd~~ss~~a~~~~s~---~~~~~~ 465 (577)
T KOG0642|consen 399 VWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPKE--------HGYPLSVDRTSSRPAHSLASF---RFGYTS 465 (577)
T ss_pred eeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCccc--------cCCcceEeeccchhHhhhhhc---cccccc
Confidence 9999999987 6799999999999999876655 23322211 112234444332112222222 222222
Q ss_pred cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
+..... +..+.+.+. ..
T Consensus 466 ~~~~ev-------------------------~s~~~~~~s-----------------~~--------------------- 482 (577)
T KOG0642|consen 466 IDDMEV-------------------------VSDLLIFES-----------------SA--------------------- 482 (577)
T ss_pred chhhhh-------------------------hhheeeccc-----------------cC---------------------
Confidence 222111 001111110 00
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEe
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE 392 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 392 (538)
..+......+..+.. .|.+.+.+++..++.|++++..+++++....+|...+++++
T Consensus 483 -----------------------~~~~~~~~~in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla 538 (577)
T KOG0642|consen 483 -----------------------SPGPRRYPQINKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA 538 (577)
T ss_pred -----------------------CCcccccCccceEEe-cCCCCeeEecccCCceecccccccccchheeeccceeccee
Confidence 000000012555665 78889999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 393 PHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 393 ~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+.|+|.+|++++.||.|++|++....+
T Consensus 539 i~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ecCCCceEEeecCCceeehhhccchhe
Confidence 999999999999999999999976544
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=185.23 Aligned_cols=275 Identities=12% Similarity=0.183 Sum_probs=208.2
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 142 (538)
.|..++|-|+|..|+.+.. ..+.|||...|..+.++ ++|...|++++|+. +|+.+++|+.|..|.+|.-.-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtL-KgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccccc-ccccceEEEEEEcc--CCceeccCCCceeEEEeccccccee-
Confidence 8999999999988887754 47999999999988777 89999999999999 9999999999999999986432222
Q ss_pred eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE
Q 009266 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
-..|...|.|+.|+|-. +.|++++-. ..-+|........+ .+ ....+.+++|..+ |++|+.|
T Consensus 89 ---kYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K-~k-----------ss~R~~~CsWtnD-GqylalG 150 (1081)
T KOG1538|consen 89 ---KYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK-HK-----------SSSRIICCSWTND-GQYLALG 150 (1081)
T ss_pred ---eeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh-hh-----------hheeEEEeeecCC-CcEEEEe
Confidence 23699999999999988 678888763 57788766543322 11 3447899999998 8999999
Q ss_pred eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-----CEEEEEcCC-eEEEeeccCCCCCC
Q 009266 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-----ELLVSYNDE-FIYLFTQDMGLGPN 296 (538)
Q Consensus 223 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-----~~l~~~~~~-~i~~~d~~~~~~~~ 296 (538)
-.+|+|.|-+...... ......++.+.+|.+++|+|.. ..+++..-+ ++..|.+...
T Consensus 151 ~~nGTIsiRNk~gEek-------------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---- 213 (1081)
T KOG1538|consen 151 MFNGTISIRNKNGEEK-------------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---- 213 (1081)
T ss_pred ccCceEEeecCCCCcc-------------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce----
Confidence 9999998875432211 1122334567899999999964 245555533 5555555431
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
.+..-+.-.- ...++.| -|+|.|+..|+.++.+++|-. .|-
T Consensus 214 -----------------------------------~Igk~r~L~F--dP~CisY-f~NGEy~LiGGsdk~L~~fTR-~Gv 254 (1081)
T KOG1538|consen 214 -----------------------------------QIGKDRALNF--DPCCISY-FTNGEYILLGGSDKQLSLFTR-DGV 254 (1081)
T ss_pred -----------------------------------eecccccCCC--Cchhhee-ccCCcEEEEccCCCceEEEee-cCe
Confidence 1110000001 1456777 699999999999999999984 677
Q ss_pred eeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 377 LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 377 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
.+.++......|+.++..|++++++.|+.||+|-.|++-.
T Consensus 255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 7777766678999999999999999999999999999754
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-21 Score=183.41 Aligned_cols=369 Identities=15% Similarity=0.202 Sum_probs=247.4
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCC---CEEEEec
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGS 80 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~t~~ 80 (538)
+-|++++++++.... ..|+||...||.++ +.+.+|..+++.+.+.|.. .++++++
T Consensus 22 avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i---------------------~~l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTG-NFVKVYSTATGECI---------------------TSLEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred cccccCCcEEEEeeC-CEEEEEecchHhhh---------------------hhcccccCccceeeecCCCccceEEEEEe
Confidence 557889988888774 48999999999986 5789999999999999854 4778999
Q ss_pred CCCeEEEEECCCCceeee--------------------------------------------------------------
Q 009266 81 DDRRVILWDWKTERVKLS-------------------------------------------------------------- 98 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~-------------------------------------------------------------- 98 (538)
.+|.|++|+...+.++.+
T Consensus 80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 999999999765422100
Q ss_pred ----------------------------------------eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc-
Q 009266 99 ----------------------------------------FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE- 137 (538)
Q Consensus 99 ----------------------------------------~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~- 137 (538)
....|.-.+++.+++| +++++|++..+|.|.+|.--.
T Consensus 160 ~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 160 HQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred hcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEecccc
Confidence 0122455678899999 999999999999999997543
Q ss_pred -CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 138 -RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 138 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
........+.-|...|++++|+++| .+|++|+..|.+.+|.+.+++. +.++. -.++|..+.++|+ +
T Consensus 238 ~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-qfLPR----------Lgs~I~~i~vS~d-s 304 (792)
T KOG1963|consen 238 SDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-QFLPR----------LGSPILHIVVSPD-S 304 (792)
T ss_pred ccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-ccccc----------cCCeeEEEEEcCC-C
Confidence 3333334577899999999999999 6899999999999999999983 22221 3348999999998 6
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-CCEEEEEcCCeEEEeeccCCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGP 295 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~i~~~d~~~~~~~ 295 (538)
.+.+....|..|.+..+.+......+.--.|. ..........-.+.++++|. +..+..+..+.|.+|++.+....
T Consensus 305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~----~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 305 DLYSLVLEDNQIHLIKASDLEIKSTISGIKPP----TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred CeEEEEecCceEEEEeccchhhhhhccCccCC----CccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 88888899999999998776544332211111 01112223456778899994 45555566889999999887655
Q ss_pred CCCCCCC-----cc----ccccccccCCCCccccCCC----------------CCC---CCcccCC--ceeeccccceee
Q 009266 296 NPPPSSP-----VS----TRSEASEMGSDHTSAASPS----------------TAN---TDVRIAP--QVYKGHRNCVTV 345 (538)
Q Consensus 296 ~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~----------------~~~---~~~~~~~--~~~~~~~~~~~i 345 (538)
..+.... .. ...........+..++... +|. ..+...+ .....|... +
T Consensus 381 ~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~--~ 458 (792)
T KOG1963|consen 381 YKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA--F 458 (792)
T ss_pred eeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce--e
Confidence 4433110 00 0000000011111111100 000 0001111 122234444 3
Q ss_pred eEEEEecCCCc-EEEEeccCCeEEEeeccCc----------ceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 346 KGVNFFGPKCE-YVVSGSDCGRIFIWKKKGG----------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 346 ~~v~~~s~~~~-~l~~gs~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
...++.+|... ..++++.+|.++||-+..- .+...-.-|..++++++|+.+|. |++++.+++|.+|+.
T Consensus 459 vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 459 VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred EEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecC
Confidence 34444355444 8899999999999998332 22222223778999999999996 455667899999999
Q ss_pred CC
Q 009266 415 NA 416 (538)
Q Consensus 415 ~~ 416 (538)
.+
T Consensus 538 ~~ 539 (792)
T KOG1963|consen 538 DT 539 (792)
T ss_pred CC
Confidence 87
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.4e-22 Score=169.65 Aligned_cols=270 Identities=14% Similarity=0.166 Sum_probs=193.8
Q ss_pred CCcCcEEEEEEcCC----CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEee
Q 009266 59 KHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (538)
Q Consensus 59 ~h~~~v~~~~~s~~----g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd 134 (538)
.|......++|+-+ ..+||.|+.-|.|+|.|+.++++...+ .+|...|+.|.+.|. ..++|++++.|..||+|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~-~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCC-CCcEEEEecCCceEEEEe
Confidence 47888899999864 458999999999999999999987777 899999999999993 567999999999999999
Q ss_pred cccCceeeee-eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeec------------------ccC
Q 009266 135 ILERGGVETK-LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR------------------PID 195 (538)
Q Consensus 135 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~ 195 (538)
+++..++... -+.+|...|.++.|++++ .+|++++.|.+|++|++...+....+... -..
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 9999887652 245799999999999999 58999999999999999854432221111 000
Q ss_pred CCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC-CCCCCCcccCCCCccCCCccc--eEEEEEcCC
Q 009266 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST-DFGQPADYFCPPNLIGDEQVG--ITGLAFSDQ 272 (538)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~ 272 (538)
-.....|...|-|+.|- +.++++-+-++.|..|..-.... .+ ...+|...........-.... ....+|.|-
T Consensus 244 fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e--~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEE--SIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred ccccccccchHHHHHHH---hhheeecccCceEEEEecchhhh--hhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 00111244566777776 46899988899999998742211 10 000111000111111111223 344566777
Q ss_pred CCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEe
Q 009266 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (538)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 351 (538)
+++||.+. .|.|++|++....+. ...++..+....+|...+|
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~------------------------------------~~ttl~~s~~~~tVRQ~sf- 361 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPP------------------------------------KCTTLTHSKSGSTVRQTSF- 361 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCc------------------------------------cCceEEeccccceeeeeee-
Confidence 89999988 569999999874321 2344555555557999998
Q ss_pred cCCCcEEEEeccCCeEEEeecc
Q 009266 352 GPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 352 s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
|.+|.+|+....++.|.-||..
T Consensus 362 S~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 362 SRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999999853
No 171
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=2.3e-21 Score=176.14 Aligned_cols=203 Identities=17% Similarity=0.208 Sum_probs=144.8
Q ss_pred eeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-CCEEEEEcC
Q 009266 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYND 281 (538)
Q Consensus 203 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~ 281 (538)
...|+.+.|.|-+...|++++.||.|+||.+..+.+. .....+...+..|...|+++.|+|- ...|++++.
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------cccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 4567788888877789999999999999999887543 2233456677778899999999995 457777775
Q ss_pred C-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE
Q 009266 282 E-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (538)
Q Consensus 282 ~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~ 360 (538)
+ +|++||+.+ ......+.+|... |..++| ||+|+.+|+
T Consensus 699 d~Ti~lWDl~~--------------------------------------~~~~~~l~gHtdq--If~~AW-SpdGr~~At 737 (1012)
T KOG1445|consen 699 DSTIELWDLAN--------------------------------------AKLYSRLVGHTDQ--IFGIAW-SPDGRRIAT 737 (1012)
T ss_pred cceeeeeehhh--------------------------------------hhhhheeccCcCc--eeEEEE-CCCCcceee
Confidence 5 999999988 4556788999997 999999 999999999
Q ss_pred eccCCeEEEeeccCcc-eeEEeecCc-ceeeEEeecCCCCeEEEeecC----CceEEecCCCCcccccCccc----eeee
Q 009266 361 GSDCGRIFIWKKKGGE-LIRVIEADR-HVVNCIEPHPHSTVLASSGIE----SDIKILTPNAADRATLPTNI----EQVL 430 (538)
Q Consensus 361 gs~dg~i~iwd~~~~~-~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d----g~v~vw~~~~~~~~~~~~~~----~~~~ 430 (538)
.+.||+|+||+-.+++ ++..-++.. ..-..+.|.-+|++|++.+.| ..|.+|+.++-....+.... -.++
T Consensus 738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~L 817 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPL 817 (1012)
T ss_pred eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccc
Confidence 9999999999987664 333322221 233456788899988887765 46888887654332221110 1111
Q ss_pred ec--ccCc--eeeeccCCCCCceeeccc
Q 009266 431 IP--DHIR--WFALGDDDDGDYYFYDIY 454 (538)
Q Consensus 431 ~~--~~~~--~l~s~~~d~~~~~~~~~~ 454 (538)
.+ ..+. .+++|-.|...|.|.-.+
T Consensus 818 vP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 818 VPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cccccCCCceEEEecCCCceEEEEEecC
Confidence 11 1333 677777777777664444
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.89 E-value=3.8e-23 Score=193.27 Aligned_cols=287 Identities=19% Similarity=0.255 Sum_probs=219.8
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
+.++.|.+|..+|.|++|...|.+++||+.|..|+||...++.++... .||.+.|+.++.+. +..++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~--~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSS--NNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccch--hhhhhhhcccCceEE
Confidence 667788999999999999999999999999999999999999998888 89999999999998 889999999999999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
+|.+..+..+.. +.+|++.|++|+|+|- .+.+.||++++||.+-. .. .+ .+...... ...-+.++.|
T Consensus 258 vWrl~~~~pvsv--LrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~-~~-~y-~prp~~~~---~~~~~~s~~~ 324 (1113)
T KOG0644|consen 258 VWRLPDGAPVSV--LRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLE-PR-IY-VPRPLKFT---EKDLVDSILF 324 (1113)
T ss_pred EEecCCCchHHH--HhccccceeeeccCcc-----ccCCCCCceEecccccc-cc-cc-CCCCCCcc---cccceeeeec
Confidence 999998877765 9999999999999993 37789999999998821 11 11 11111111 2234667777
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-CEEEEEc-CCeEEEeec
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQ 289 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~i~~~d~ 289 (538)
... +..+++++.++.-+.|.+...... ...+.-+.++.+- .+.+++- .-.+.+|++
T Consensus 325 ~~~-~~~f~Tgs~d~ea~n~e~~~l~~~---------------------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 325 ENN-GDRFLTGSRDGEARNHEFEQLAWR---------------------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNL 382 (1113)
T ss_pred ccc-ccccccccCCcccccchhhHhhhh---------------------ccceEEEeccccccccceeeeeeeEeeeeec
Confidence 775 788999999999988887653211 1112222222222 2333333 337889998
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC-cEEEEeccCCeEE
Q 009266 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIF 368 (538)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~l~~gs~dg~i~ 368 (538)
.+ +...+.+.+|... +..+.+ +|-. +...+++.||...
T Consensus 383 ~~--------------------------------------g~l~H~l~ghsd~--~yvLd~-Hpfn~ri~msag~dgst~ 421 (1113)
T KOG0644|consen 383 YT--------------------------------------GQLLHNLMGHSDE--VYVLDV-HPFNPRIAMSAGYDGSTI 421 (1113)
T ss_pred cc--------------------------------------chhhhhhcccccc--eeeeee-cCCCcHhhhhccCCCceE
Confidence 87 5567778888887 555666 6654 4556899999999
Q ss_pred EeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
|||+-.|.+++.+....+.+...+||++|..++....-|.++|.....+
T Consensus 422 iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 422 IWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred eeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 9999999888766544567778899999999998888899999876543
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-22 Score=197.36 Aligned_cols=251 Identities=21% Similarity=0.289 Sum_probs=196.8
Q ss_pred cCcEEEEEEcCCCCE----EEEecCCCeEEEEECCC---Cc---eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcE
Q 009266 61 RGCVNTVSFNTDGDI----LISGSDDRRVILWDWKT---ER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~----l~t~~~d~~i~iw~~~~---~~---~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
....+.|+|.+.|.. ||.|..||.|.+|+... +. .+.+. ..|.+.|..|.|+++ .+++||+|+.+|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~-q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPF-QGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeecccc-CCceeeccCCCCcE
Confidence 456889999997765 89999999999999764 22 23333 789999999999994 45699999999999
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
.|||+...+......-......|.+++|+..-.++|++++.+|++.|||++..+.+..+..+.. ...+..++
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~--------~~~~S~l~ 213 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG--------RMHCSVLA 213 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC--------ccceeeee
Confidence 9999987554433222235678999999988778999999999999999999877766654332 23588999
Q ss_pred EcCCCCcEEEEEeCCC---eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-CEEEEEc-CCeEE
Q 009266 211 IDPRNANLFAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIY 285 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~i~ 285 (538)
|+|++...|++++.|. .|.+||+|... .+.....+|...|.++.|++.+ ++|++++ +++|.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~as--------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFAS--------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccC--------------CchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence 9999888888888765 68999999754 3556667899999999999976 7777777 77999
Q ss_pred EeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc-EEEEeccC
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDC 364 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~~gs~d 364 (538)
+|+..++. .+..+....++ +..+.| .|..- .+++++-+
T Consensus 280 ~wN~~tgE--------------------------------------vl~~~p~~~nW--~fdv~w-~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 280 CWNPNTGE--------------------------------------VLGELPAQGNW--CFDVQW-CPRNPSVMAAASFD 318 (1049)
T ss_pred EecCCCce--------------------------------------EeeecCCCCcc--eeeeee-cCCCcchhhhheec
Confidence 99998853 33444444444 888998 66554 88899999
Q ss_pred CeEEEeeccCcc
Q 009266 365 GRIFIWKKKGGE 376 (538)
Q Consensus 365 g~i~iwd~~~~~ 376 (538)
|.|-||.+..+.
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999987654
No 174
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.5e-23 Score=194.77 Aligned_cols=204 Identities=11% Similarity=0.122 Sum_probs=143.6
Q ss_pred EEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
.||+..++++.|....+|++|+-..++|+.|+..|.|++|++.+|...... .+|.++|+.+.-+. +|..+++.+.-.
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~--dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSV--DGSTQLTSSSSS 1165 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccC--Ccceeeeecccc
Confidence 456888899999999999999999999999999999999999999987777 89999999999888 888887766433
Q ss_pred --cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee
Q 009266 129 --QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (538)
Q Consensus 129 --~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (538)
-..+|++.+-. ...+.+ ..-.++.|+... +.-+.|.......+||+.++..+.++...... ....-
T Consensus 1166 ~PlsaLW~~~s~~-~~~Hsf----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~------~~y~~ 1233 (1516)
T KOG1832|consen 1166 SPLSALWDASSTG-GPRHSF----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVT------SSYSN 1233 (1516)
T ss_pred CchHHHhcccccc-Cccccc----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchh------hhhhc
Confidence 57899986521 111122 234578888765 33344555567999999999887764322111 11233
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEE
Q 009266 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (538)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~ 286 (538)
+++.|+|. ..+++ .|| .+||++..+.+..+ .... --..-.|+|.|..++..+. |
T Consensus 1234 n~a~FsP~-D~LIl---ndG--vLWDvR~~~aIh~F---------------D~ft-~~~~G~FHP~g~eVIINSE----I 1287 (1516)
T KOG1832|consen 1234 NLAHFSPC-DTLIL---NDG--VLWDVRIPEAIHRF---------------DQFT-DYGGGGFHPSGNEVIINSE----I 1287 (1516)
T ss_pred cccccCCC-cceEe---eCc--eeeeeccHHHHhhh---------------hhhe-ecccccccCCCceEEeech----h
Confidence 78899998 45655 344 68999986422111 0001 1122358999988877654 8
Q ss_pred eeccCCC
Q 009266 287 FTQDMGL 293 (538)
Q Consensus 287 ~d~~~~~ 293 (538)
||+++-+
T Consensus 1288 wD~RTF~ 1294 (1516)
T KOG1832|consen 1288 WDMRTFK 1294 (1516)
T ss_pred hhhHHHH
Confidence 9998843
No 175
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=161.98 Aligned_cols=374 Identities=14% Similarity=0.117 Sum_probs=239.5
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEE-ecC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-GSD 81 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t-~~~ 81 (538)
.|.|+|+++++|+.++- .+.|-|..|-++.+ .+. .-..|..+.|..+..+++. ...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q---------------------lf~-cldki~yieW~ads~~ilC~~yk 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ---------------------LFL-CLDKIVYIEWKADSCHILCVAYK 69 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH---------------------HHH-HHHHhhheeeeccceeeeeeeec
Confidence 47799999999999866 78888888666531 111 2356888899988776655 467
Q ss_pred CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEE-EEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
++.|.+|++...+-..++ .....++.+++||| +|+.|+ +...+-.|.||.+.+.+... ++.....+..++|+|
T Consensus 70 ~~~vqvwsl~Qpew~ckI-deg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~---~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL---LPHPKTNVKGYAFHP 143 (447)
T ss_pred cceEEEEEeecceeEEEe-ccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE---ecccccCceeEEECC
Confidence 889999999988877777 55667899999999 996555 55668899999999877654 333445678999999
Q ss_pred CCCcEEEEEcCCCcEEEEecC---CCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC--CCeEEEEEcCC
Q 009266 161 GSPHVFYTCGEDGLVQHFDLR---TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--DEYTRLYDIRK 235 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~ 235 (538)
+| ++.+.++.--..-.+.+. .-..+..+.. .....+.+.|+|+ |+.|++-.. +-.|..|..
T Consensus 144 dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~----------dT~DltgieWsPd-g~~laVwd~~Leykv~aYe~-- 209 (447)
T KOG4497|consen 144 DG-QFCAILSRRDCKDYVQISSCKAWILLKEFKL----------DTIDLTGIEWSPD-GNWLAVWDNVLEYKVYAYER-- 209 (447)
T ss_pred CC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCC----------CcccccCceECCC-CcEEEEecchhhheeeeeee--
Confidence 99 566665543221111221 1122222322 2235788999998 677764321 112222221
Q ss_pred ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCC---------------
Q 009266 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP--------------- 299 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~--------------- 299 (538)
.-.+..++|+|.+++|++|+ ++.+++.+--+-+....+-
T Consensus 210 -------------------------~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 210 -------------------------GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK 264 (447)
T ss_pred -------------------------ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence 23678899999999999999 5577776654433222211
Q ss_pred --CCCccccccccccCCCCccccCCCCCCC-----CcccCCceee---cccc-ceeeeEEEEecCCCcEEEEeccC--Ce
Q 009266 300 --SSPVSTRSEASEMGSDHTSAASPSTANT-----DVRIAPQVYK---GHRN-CVTVKGVNFFGPKCEYVVSGSDC--GR 366 (538)
Q Consensus 300 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~-~~~i~~v~~~s~~~~~l~~gs~d--g~ 366 (538)
.++......+.++.|............+ ......+.++ ...+ ...+--++| +++..|+++-... +.
T Consensus 265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf-s~Ds~y~aTrnd~~Pna 343 (447)
T KOG4497|consen 265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF-SCDSTYAATRNDKYPNA 343 (447)
T ss_pred hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee-cCCceEEeeecCCCCce
Confidence 0011111111112221111111110000 0001111111 0111 123677888 9999999987644 68
Q ss_pred EEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceeeeecc---cCceeeeccC
Q 009266 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVLIPD---HIRWFALGDD 443 (538)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~ 443 (538)
+.+||++..++...+. ...+|....|.|....|+.+.....+++|.+........++..-.|..+. ++..|+..+.
T Consensus 344 lW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 344 LWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred EEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 9999998887766664 35689999999999999988888889999999988888887777777776 5557777777
Q ss_pred CCC
Q 009266 444 DDG 446 (538)
Q Consensus 444 d~~ 446 (538)
|.-
T Consensus 423 Daf 425 (447)
T KOG4497|consen 423 DAF 425 (447)
T ss_pred Cce
Confidence 653
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=5.6e-19 Score=172.63 Aligned_cols=352 Identities=22% Similarity=0.363 Sum_probs=248.4
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc-CcEEEEEE-cCCCC-EEEEecC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSF-NTDGD-ILISGSD 81 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-s~~g~-~l~t~~~ 81 (538)
.+.+.+..++.++.++.+.+|+...+... ...+.++. ..+..+.+ ++++. +++..+.
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (466)
T COG2319 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKL--------------------IKSLEGLHDSSVSKLALSSPDGNSILLASSS 131 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcee--------------------EEEEeccCCCceeeEEEECCCcceEEeccCC
Confidence 45677888888889999999999866411 23445433 47777777 88887 5555444
Q ss_pred -CCeEEEEECCC-CceeeeeccCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 82 -DRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 82 -d~~i~iw~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
++.+++|++.. ......+ ..|...|..++|+| ++.++++++. ++.+++|++.....+.. +..|...|.+++|
T Consensus 132 ~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~ 206 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLST--LAGHTDPVSSLAF 206 (466)
T ss_pred CCccEEEEEecCCCeEEEEE-ecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEe--eccCCCceEEEEE
Confidence 89999999987 5555555 78999999999999 8888888885 99999999987555554 6679999999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEecCCCCeee-eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcc
Q 009266 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
+|+++.++++++.++.|++|+...+.... .+..+. . .. ...|+|+ +.++++++.++.+++|+++...
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------~--~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS--------D--SV-VSSFSPD-GSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC--------c--ce-eEeECCC-CCEEEEecCCCcEEEeeecCCC
Confidence 99885355666999999999888666665 333322 1 22 2289997 4788899999999999998764
Q ss_pred ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCC
Q 009266 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
. ..... ..|...+.++.|.|++..+++++ ++.+.+|+..+..
T Consensus 275 ~-------------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------- 317 (466)
T COG2319 275 S-------------LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK----------------------- 317 (466)
T ss_pred c-------------EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-----------------------
Confidence 2 00111 34578899999999888877765 5579999876532
Q ss_pred ccccCCCCCCCCcccCCcee--eccccceeeeEEEEecCCCcEEEEe-ccCCeEEEeeccCcceeEEeecCcceeeEEee
Q 009266 317 TSAASPSTANTDVRIAPQVY--KGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~v~~~s~~~~~l~~g-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (538)
..... ..|... +..+.| .+++..++.+ ..++.+++|++...........+ ..+..+.+
T Consensus 318 ---------------~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 378 (466)
T COG2319 318 ---------------LLSSLTLKGHEGP--VSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSF 378 (466)
T ss_pred ---------------eEEEeeecccCCc--eEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEE
Confidence 11222 245543 778887 6664555555 67899999999887733333322 23889999
Q ss_pred cCCCCeEEE-eecCCceEEecCCCCcccccCccc-eeeeecc--cCc-eeeeccCCCCCcee
Q 009266 394 HPHSTVLAS-SGIESDIKILTPNAADRATLPTNI-EQVLIPD--HIR-WFALGDDDDGDYYF 450 (538)
Q Consensus 394 s~~~~~l~s-~~~dg~v~vw~~~~~~~~~~~~~~-~~~~~~~--~~~-~l~s~~~d~~~~~~ 450 (538)
++ ...++. +..++.+.+|+............. ..+.... +.+ .+++++.+.....+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 99 544444 688999999999987664443333 4444333 444 56665555544444
No 177
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.1e-21 Score=163.14 Aligned_cols=318 Identities=16% Similarity=0.205 Sum_probs=212.9
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEe-eeeeEEc-CCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-GIYAKLD-KHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
|+.++++||+|+.|..++||++.. ++.+ +. +++.... .|...|.|++|...++.|.+|+.++
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de--~~~~--------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDE--LMVR--------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred eccCCeEEeecCCcceeeeechHH--HHhh--------------cCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 666799999999999999999983 2211 11 2233322 3558999999999999999999999
Q ss_pred eEEEEECCCCceeeeec-cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce-eeeeeccccCCCcEEEEEcCC
Q 009266 84 RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~ 161 (538)
+|.+.++.+.+.+..+. ....+.|+.+..+| ..+.|++.+.++.|.+|+.+.... .....+.........+.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 99999999988876652 22345999999999 789999999999999999986652 222223344567889999999
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
.+.+|++.+..+-+-+||++..+.. .++......++. ......++.|+|. |+.|++--...--.+||+-+.++. .
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~-~~~~~~~~~L~~--~~~~~M~~~~~~~-G~Q~msiRR~~~P~~~D~~S~R~~-V 280 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARP-VYQRSMFKGLPQ--ENTEWMGSLWSPS-GNQFMSIRRGKCPLYFDFISQRCF-V 280 (609)
T ss_pred CceeEEeccccCCCCceeeccccch-HHhhhccccCcc--cchhhhheeeCCC-CCeehhhhccCCCEEeeeecccce-e
Confidence 9999999999999999999865432 111111111110 1223467889997 666666555455567787664320 0
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
+++......+ .....+.+++|..+-. +++|++. .|++|.+.......-+... ..+...+.
T Consensus 281 ~k~D~N~~GY-------~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~I-----------G~~~~~~~ 341 (609)
T KOG4227|consen 281 LKSDHNPNGY-------CNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQI-----------GHDEEEMP 341 (609)
T ss_pred EeccCCCCcc-------eeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCcccc-----------CcchhhCc
Confidence 1111000000 1134577888876654 8888877 8999998653221111000 00000000
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
........+..++||... +..|.| +|...+|++.+-.+.++||.-
T Consensus 342 ----~~~~i~~~~~VLrGHRSv--~NQVRF-~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 342 ----SEIFIEKELTVLRGHRSV--PNQVRF-SQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ----hhheecceeEEEeccccc--ccceee-cCCcceEeccchhhheecccc
Confidence 001124456789999987 889998 999999999999999999975
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.5e-21 Score=175.12 Aligned_cols=255 Identities=18% Similarity=0.201 Sum_probs=184.5
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-|+|-.+.|++++.+|+|++|+++... ......++++.+|++|.++|.|+++.+++.++.+|+.||+
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~-------------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAK-------------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccC-------------CccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 467788899999999999999995311 1223456788999999999999999999999999999999
Q ss_pred EEEEECCCC---------ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEE
Q 009266 85 VILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (538)
Q Consensus 85 i~iw~~~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~ 155 (538)
|+.|++... ..+...+.||...|+.+++++ ....|++|+.||+|++|....... .+.....-.+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS--TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecc--cccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999976421 133444589999999999999 888999999999999999876544 22111222233455
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
+.+-...+.+.++...-+.--++++........+. ....++......+..+.++|. ..+.+++..++.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~---s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE---SSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeecc---ccCCCcccccCccceEEecCC-CCeeEecccCCceecccccc
Confidence 55554432333333333333344444444333333 222233223346788899997 68999999999999999998
Q ss_pred ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCC
Q 009266 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~ 294 (538)
+.+ ......|...++++++.|+|-+|++++ ++.+++|.+.....
T Consensus 521 ~~~---------------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 521 GKI---------------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ccc---------------chheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 863 344455788999999999999999998 66999999876433
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=3.2e-20 Score=155.21 Aligned_cols=285 Identities=13% Similarity=0.127 Sum_probs=199.9
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcC-CcCcEEEEEEc-------CCCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFN-------TDGD 74 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s-------~~g~ 74 (538)
.|..+|+|..|++-+.|..+++|++...-.... .+....++..-.++- ....|...+|- |+..
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~---------~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK---------ADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccC---------CCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 466789999999999999999999973222111 111122222222221 23456666765 5678
Q ss_pred EEEEecCCCeEEEEECCCCceeeeec-cCCCC---CeEEEEEeecCCCceEEEEeCCCcEEEeecc-cCceeeeeecc--
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSFH-SGHND---NVFQAKIMPFTDDRSIVTCAADGQVRHAQIL-ERGGVETKLLG-- 147 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~~-~~~~~---~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~-- 147 (538)
++|+.+.+.-|++||.-+|+....+. -.|.. ...+|+|+| +|..|++|-. ..|+++++. .+.........
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeeccc-ceEEEeeccCCCCCCcchhhhhc
Confidence 99999999999999999999876662 12332 456899999 9999988764 789999994 33322221122
Q ss_pred ---ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC
Q 009266 148 ---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 148 ---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 224 (538)
+..+.|.+++|+|..+.+++.++...++-||.-..+.++..+.. +.+.|+.++|.++ |+.|++|..
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg----------h~gGvThL~~~ed-Gn~lfsGaR 270 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG----------HGGGVTHLQWCED-GNKLFSGAR 270 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc----------cCCCeeeEEeccC-cCeeccccc
Confidence 34678999999999878999999999999999888888877764 4448999999998 677777764
Q ss_pred -CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCcc-ceE--EEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCC
Q 009266 225 -DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GIT--GLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (538)
Q Consensus 225 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~--~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~ 299 (538)
+-.|..||+|..+. +...+..|.. .-. -+...|.+++|++|+ +|.|++||+...
T Consensus 271 k~dkIl~WDiR~~~~--------------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~------- 329 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRD--------------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL------- 329 (406)
T ss_pred CCCeEEEEeehhccc--------------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-------
Confidence 77899999998652 1111111211 222 344568999999995 889999999863
Q ss_pred CCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC
Q 009266 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
...+..+..+... ++.|++ +|--.++|+++..
T Consensus 330 ------------------------------gn~~sv~~~~sd~--vNgvsl-nP~mpilatssGq 361 (406)
T KOG2919|consen 330 ------------------------------GNEVSVTGNYSDT--VNGVSL-NPIMPILATSSGQ 361 (406)
T ss_pred ------------------------------CCccccccccccc--ccceec-CcccceeeeccCc
Confidence 2234445555554 888888 8887777777643
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=2.1e-18 Score=168.51 Aligned_cols=316 Identities=26% Similarity=0.426 Sum_probs=234.4
Q ss_pred CCCCc-eEEee-ccCCceEEeeecc-CceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC-C
Q 009266 7 NNNNK-RARTS-VDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-D 82 (538)
Q Consensus 7 ~~~~~-~l~t~-~~d~~v~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~-d 82 (538)
.+++. +++.. ..++.+++|+... ... ...+..|...|.+++|+|++.++++++. +
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 177 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKL---------------------IRTLEGHSESVTSLAFSPDGKLLASGSSLD 177 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeE---------------------EEEEecCcccEEEEEECCCCCEEEecCCCC
Confidence 34444 44544 4499999999985 333 4678899999999999999999999885 9
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCc-eEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCC
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
+.+++|++..+..+..+ .+|...|.+++|+| ++. .+++++.++.|++|+...+..... .+..|...+ ...|+|+
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~ 252 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPD 252 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCC
Confidence 99999999987776666 67999999999998 887 555558999999998875555441 377787775 4489999
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCe-eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
+ .++++++.++.+++|+++.... ...+.. +...+.++.|.|. +..+++++.++.+++|++.......
T Consensus 253 ~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 253 G-SLLASGSSDGTIRLWDLRSSSSLLRTLSG----------HSSSVLSVAFSPD-GKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred C-CEEEEecCCCcEEEeeecCCCcEEEEEec----------CCccEEEEEECCC-CCEEEEeeCCCcEEEEEcCCCceEE
Confidence 8 6888999999999999987765 333311 3447899999996 5677778888999999888765321
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE-c-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcc
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
.. . ...|...+..+.|.+++..++.+ . ++.+.+|++....
T Consensus 321 ~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------------- 362 (466)
T COG2319 321 SL------------T-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK------------------------- 362 (466)
T ss_pred Ee------------e-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-------------------------
Confidence 10 0 12344478888884332455555 3 5578889987631
Q ss_pred ccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE-eccCCeEEEeeccCcceeEEeecCcceeeEEeecCCC
Q 009266 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~-gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 397 (538)
......... .+..+.+ ++ ...++. +..++.+.+|+............+...+..+.+++.+
T Consensus 363 -------------~~~~~~~~~---~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (466)
T COG2319 363 -------------PLKTLEGHS---NVLSVSF-SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424 (466)
T ss_pred -------------eeEEecCCc---eEEEEEE-CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCC
Confidence 111111111 1667777 66 444444 7889999999999888877766554689999999999
Q ss_pred CeEEEeecCCceEEecCCC
Q 009266 398 TVLASSGIESDIKILTPNA 416 (538)
Q Consensus 398 ~~l~s~~~dg~v~vw~~~~ 416 (538)
.++++++.++.+++|++..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 425 KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEecCCCcEEEEeccC
Confidence 9999999999999999987
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=3.6e-20 Score=152.48 Aligned_cols=281 Identities=16% Similarity=0.176 Sum_probs=190.8
Q ss_pred eEEcCCcCcEEEEEEcC-CCCEEEEecCC-------CeEEEEECCCC---------ceeeeeccCCCCCeEEEEEeecCC
Q 009266 55 AKLDKHRGCVNTVSFNT-DGDILISGSDD-------RRVILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTD 117 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~-~g~~l~t~~~d-------~~i~iw~~~~~---------~~~~~~~~~~~~~v~~l~~~~~~~ 117 (538)
+.|..|.+.|+.|+-+| +.++|+|+..+ ..+.||.+... +++..+-..+-+.|.|+.|.| +
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P--n 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP--N 134 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC--C
Confidence 45677899999999999 45667766432 24789988543 233334345667999999999 9
Q ss_pred CceEEEEeCCCcEEEeecccCceeee----eeccccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEEecCCCCeeeeeeec
Q 009266 118 DRSIVTCAADGQVRHAQILERGGVET----KLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (538)
Q Consensus 118 ~~~l~s~~~dg~v~vwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 192 (538)
+..|++-. +..|.+|++..+..+.. ..-..+....++-+|+|.. .+.++ ...+++++.||+++.++...+.-.
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhh
Confidence 99998877 78999999987765221 1122356678888999932 24444 456789999999998877665522
Q ss_pred ccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC
Q 009266 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (538)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 272 (538)
|...|..+.|+|....+|++++.||.|+|||+|..+ .+......|...|.++.|+|.
T Consensus 213 ---------Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------------~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 213 ---------HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------------FPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred ---------hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------------ccccccCCCceEEEEEEecCc
Confidence 444799999999877789999999999999999865 355666778999999999996
Q ss_pred -CCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE
Q 009266 273 -SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 273 -~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
.++|++++ +..|.+|-...-.....+........ .++.. ....-.......+.++..|... |++++|
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese------~e~~d---seer~kpL~dg~l~tydehEDS--VY~~aW 338 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE------SEDED---SEERVKPLQDGQLETYDEHEDS--VYALAW 338 (370)
T ss_pred cceEEEecCCCceeEEEecccccccccccccccccc------Ccchh---hHHhcccccccccccccccccc--eEEEee
Confidence 45666666 44888887654322111110000000 00000 0000001113345678888887 999999
Q ss_pred ecCCCcEEEEeccCCeEEEeecc
Q 009266 351 FGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 351 ~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
.+.+.=.+|+-+.||++.|=.+.
T Consensus 339 SsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccCCCeeEEEeccCceEEeecCC
Confidence 44455567889999999886653
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=5.1e-19 Score=164.46 Aligned_cols=288 Identities=11% Similarity=0.178 Sum_probs=177.3
Q ss_pred EEeeccCCceEEeeecc-CceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEec-CCCeEEEEEC
Q 009266 13 ARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS-DDRRVILWDW 90 (538)
Q Consensus 13 l~t~~~d~~v~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~-~d~~i~iw~~ 90 (538)
.++...++.|++|++.+ |++. .++.+. +.+....++++|++++|++++ .++.|.+|++
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~-------------------~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALT-------------------LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEcCCCCCEEEEEECCCCcee-------------------eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 34447789999999964 4321 234443 345677899999999887654 5788999998
Q ss_pred C-CCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCceee--eeeccccCCCcEEEEEcCCCCcEE
Q 009266 91 K-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVE--TKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 91 ~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
. ++.....-..........++|+| ++++|++++. ++.|.+|++.+...+. ...+. +...+..++++|+++.++
T Consensus 65 ~~~g~l~~~~~~~~~~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 65 ADDGALTFAAESPLPGSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLW 141 (330)
T ss_pred CCCCceEEeeeecCCCCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEE
Confidence 6 34321111112334567899999 9999888774 7899999996432211 11122 234467889999996555
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC-CCeEEEEEcCCc--cccCCCC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRKY--KWDGSTD 243 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~--~~~~~~~ 243 (538)
++...++.|.+|++.+...+........... .......++|+|+ +++++++.. ++.|.+|++... ++.....
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~----~g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV----EGAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecC----CCCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 6777789999999987432211000000000 1113567899998 677766665 899999999742 2110000
Q ss_pred CCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
+ .. .+.. . .+......+.|+|++++|+++. .+.|.+|++......
T Consensus 217 ~----~~-~p~~-~-~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-------------------------- 263 (330)
T PRK11028 217 L----DM-MPAD-F-SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-------------------------- 263 (330)
T ss_pred E----ec-CCCc-C-CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe--------------------------
Confidence 0 00 0000 0 0122345789999999988875 458999998642110
Q ss_pred CCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc-CCeEEEeecc
Q 009266 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK 373 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~-dg~i~iwd~~ 373 (538)
........... ....+.+ +|+|++|+++.. +++|.+|++.
T Consensus 264 --------~~~~~~~~~~~---~p~~~~~-~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 264 --------LSFEGHQPTET---QPRGFNI-DHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred --------EEEeEEEeccc---cCCceEE-CCCCCEEEEEEccCCcEEEEEEc
Confidence 00111111111 2456777 999999998775 8899999874
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.2e-19 Score=143.32 Aligned_cols=283 Identities=14% Similarity=0.167 Sum_probs=192.9
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCC---------CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKT---------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~---------~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
..|.+-+++|.+++|+.|+.+|+|.++.+.+ ++.......+|.++|+.++|.. .+|++|+. |.|+=
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d----~~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD----DFLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh----hheeeccC-ceEEE
Confidence 4566778999999999999999999998853 2322222379999999999974 67777775 99999
Q ss_pred eecccCce------eeeeeccccC-----CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcc
Q 009266 133 AQILERGG------VETKLLGKHQ-----GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (538)
Q Consensus 133 wd~~~~~~------~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (538)
|..+.... +.....+.|. -.|+++.+.|.... ++.++.|+.++-||+++++....++.|..
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtD------- 157 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTD------- 157 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcc-------
Confidence 98764322 1111122233 35889999988744 55566899999999999999999987543
Q ss_pred eeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC
Q 009266 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (538)
Q Consensus 202 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (538)
.|.++..-.. ...+++|++||++|+||+++.+....+..-. .+..+..+....|.+++.+ ..+|++|+.
T Consensus 158 ---YvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk-----~~~~lRp~~g~wigala~~--edWlvCGgG 226 (325)
T KOG0649|consen 158 ---YVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEPYK-----NPNLLRPDWGKWIGALAVN--EDWLVCGGG 226 (325)
T ss_pred ---eeeeeeeccc-CcceeecCCCccEEEEeccccceeEEecccc-----ChhhcCcccCceeEEEecc--CceEEecCC
Confidence 7888887544 3578999999999999999988654432211 1112222234456666654 458888888
Q ss_pred CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe
Q 009266 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g 361 (538)
..+.+|.++... +..++.-.. .+..+.| ....++++
T Consensus 227 p~lslwhLrsse--------------------------------------~t~vfpipa---~v~~v~F---~~d~vl~~ 262 (325)
T KOG0649|consen 227 PKLSLWHLRSSE--------------------------------------STCVFPIPA---RVHLVDF---VDDCVLIG 262 (325)
T ss_pred CceeEEeccCCC--------------------------------------ceEEEeccc---ceeEeee---ecceEEEe
Confidence 899999998743 222332211 1666777 35578888
Q ss_pred ccCCeEEEeeccCcceeEEeecCcceeeEEeecCC-CCeEEEeecCCceEEec
Q 009266 362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH-STVLASSGIESDIKILT 413 (538)
Q Consensus 362 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~vw~ 413 (538)
+..+.|.-|.+ +|.+....+......++..|+.. -++|-.++....+.|+.
T Consensus 263 G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 263 GEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 88888999987 45555555544445555555433 24566667677776653
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=1.8e-19 Score=170.35 Aligned_cols=286 Identities=13% Similarity=0.129 Sum_probs=202.6
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee----eeeccccCCCcEEEEE
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE----TKLLGKHQGRAHKLAI 158 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~~~v~~~~~ 158 (538)
+.+.||++......... -.....|++++|+|+ +..+||.|..+|+|.+||++.+.... ......|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999876322222 345679999999995 77889999999999999998776521 1223468889999999
Q ss_pred cCCCC-cEEEEEcCCCcEEEEecCCCCeeeeeeecccCC--CCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 009266 159 EPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 159 ~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
..+-. .-|++++.||.|+.|+++.-............. .........+++++|.|.+.+.|++|+..|.|.-=....
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 76431 348899999999999887554322111111111 011123447899999998889999999999887633333
Q ss_pred ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCC
Q 009266 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (538)
.+.. +...+.++.....|.++|+++.++|=+. ++.++++.+++||.....
T Consensus 380 ~~~~-------~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~---------------------- 430 (555)
T KOG1587|consen 380 YTPA-------PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI---------------------- 430 (555)
T ss_pred Cccc-------ccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----------------------
Confidence 2211 1112233445556789999999999764 566666779999987621
Q ss_pred CCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC-cEEEEeccCCeEEEeeccCc--ceeEEeecCcceeeEE
Q 009266 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGG--ELIRVIEADRHVVNCI 391 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~l~~gs~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~ 391 (538)
..++..+..+... +++++| ||-. ..+|++..+|.|.|||+... .++.+.+.+....+.+
T Consensus 431 ---------------~~Pl~~~~~~~~~--v~~vaW-SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~ 492 (555)
T KOG1587|consen 431 ---------------ASPLLSLDSSPDY--VTDVAW-SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV 492 (555)
T ss_pred ---------------CCcchhhhhccce--eeeeEE-cCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence 2334444444444 899999 8865 47778888999999998643 5556666666777889
Q ss_pred eecCCCCeEEEeecCCceEEecCCCC
Q 009266 392 EPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 392 ~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
.|++.|+.|+.|...|++++|++...
T Consensus 493 ~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 493 RWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ecCCCCcEEEEecCCCcEEEEEcCch
Confidence 99999999999999999999999643
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=1.7e-19 Score=148.59 Aligned_cols=272 Identities=18% Similarity=0.242 Sum_probs=196.4
Q ss_pred CCeEEEEECCCC--ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-------CcEEEeecccCceee-------eee
Q 009266 82 DRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------GQVRHAQILERGGVE-------TKL 145 (538)
Q Consensus 82 d~~i~iw~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-------g~v~vwd~~~~~~~~-------~~~ 145 (538)
++.|.+..+..+ ......+..|.+.|+.|+-+|+ +...|+++..+ ..+.||.+....... ...
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~-d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF-DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCC-CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 577888776544 3444455678899999999994 66677776542 247799986543220 011
Q ss_pred cc-ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe-eeeeeecccCCCCCcceeeeeEEEEEcC-CCCcEEEEE
Q 009266 146 LG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVA 222 (538)
Q Consensus 146 ~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~ 222 (538)
+. .+-+.|.|+.|.|++. .+++-. +..|.+|++..+.. +..+....... +....++-+|+| .+++.+++
T Consensus 118 Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-----~~~~ftsg~WspHHdgnqv~t- 189 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-----MRHSFTSGAWSPHHDGNQVAT- 189 (370)
T ss_pred CCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeeccccccc-----ccceecccccCCCCccceEEE-
Confidence 22 3456899999999884 555544 78999999988766 33333222111 233678889999 34666665
Q ss_pred eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCE-EEEEc-CCeEEEeeccCCCCCCCCCC
Q 009266 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LVSYN-DEFIYLFTQDMGLGPNPPPS 300 (538)
Q Consensus 223 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~-~~~i~~~d~~~~~~~~~~~~ 300 (538)
..+++++.||+|+.+ +...+...|...|+.+.|+|+.+. |++++ ++.|++||.+..
T Consensus 190 t~d~tl~~~D~RT~~--------------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-------- 247 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMK--------------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-------- 247 (370)
T ss_pred eCCCcEEEEEccchh--------------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------
Confidence 468999999999876 334556667788999999998764 66676 458999999875
Q ss_pred CCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC-CCcEEEEeccCCeEEEeeccCc----
Q 009266 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGG---- 375 (538)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~~gs~dg~i~iwd~~~~---- 375 (538)
..+++.+.+|... +++|.| .| ..++|++|+.|..|.+|...+-
T Consensus 248 -----------------------------k~pv~el~~HsHW--vW~VRf-n~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 248 -----------------------------KFPVQELPGHSHW--VWAVRF-NPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred -----------------------------CccccccCCCceE--EEEEEe-cCccceEEEecCCCceeEEEecccccccc
Confidence 4567888999987 999999 55 4578889999999999976321
Q ss_pred -------------------------ceeEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCC
Q 009266 376 -------------------------ELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNA 416 (538)
Q Consensus 376 -------------------------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~ 416 (538)
..+.++..|...|++++||.-.+ .+|+-+.||.|.|=++..
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 12346677999999999998877 578889999999877654
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=6.5e-20 Score=176.21 Aligned_cols=298 Identities=20% Similarity=0.261 Sum_probs=209.1
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccC--CCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
....-..+.|+|=...++++...-.|++||.+.++.+..|..+ ....|+.+.+....+..++++|+.||.||||+--.
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3446677889998889999987779999999999987776332 33578888887544667899999999999997432
Q ss_pred Cc--e-eeee---ecc----ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 138 RG--G-VETK---LLG----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 138 ~~--~-~~~~---~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
.. . .... .+. +..+.-.-+.|..... +|+++|.-..|+|||+.......-+... ....++
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~---------s~t~vT 1212 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYG---------SSTLVT 1212 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccC---------CCccce
Confidence 21 1 1100 011 1112223456777664 4555555789999999988777666533 233577
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccc--eEEEEEcCCCCE-EEEEc-CCe
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG--ITGLAFSDQSEL-LVSYN-DEF 283 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~-l~~~~-~~~ 283 (538)
++.-+..+|++|++|..||.|++||.|..... ++......|+.. |..+.+.+.|-- |++++ +|.
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPD------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCcc------------ccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 77666556899999999999999999975421 223333445555 999999997754 66666 789
Q ss_pred EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccce-eeeEEEEecCCCcEEEEec
Q 009266 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV-TVKGVNFFGPKCEYVVSGS 362 (538)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~~~s~~~~~l~~gs 362 (538)
|++||+++.... .......|.... .++++.. ++....+|+|+
T Consensus 1281 I~~~DlR~~~~e------------------------------------~~~~iv~~~~yGs~lTal~V-H~hapiiAsGs 1323 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKE------------------------------------TFLTIVAHWEYGSALTALTV-HEHAPIIASGS 1323 (1387)
T ss_pred EEEEecccCccc------------------------------------ccceeeeccccCccceeeee-ccCCCeeeecC
Confidence 999999874111 111222222111 3677777 88999999999
Q ss_pred cCCeEEEeeccCcceeEEeecC-------cceeeEEeecCCCCeEEEeecCCceEEecCCCCc
Q 009266 363 DCGRIFIWKKKGGELIRVIEAD-------RHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 418 (538)
. +.|+||++ .|+.+..++.+ .+.+.|++|+|..-+||+|+.|.+|.||....++
T Consensus 1324 ~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1324 A-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred c-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 8 99999998 45555444422 2568999999999999999999999999877654
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=8.3e-19 Score=163.04 Aligned_cols=282 Identities=12% Similarity=0.133 Sum_probs=173.7
Q ss_pred EEecCCCeEEEEECCC-Cc--eeeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeeccc-CceeeeeeccccCC
Q 009266 77 ISGSDDRRVILWDWKT-ER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILE-RGGVETKLLGKHQG 151 (538)
Q Consensus 77 ~t~~~d~~i~iw~~~~-~~--~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~-~~~~~~~~~~~~~~ 151 (538)
++...++.|++|++.+ ++ .+..+ .+.+....++++| ++++|++++ .++.|.+|++.. +........ ....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~ 80 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPG 80 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCC
Confidence 3446689999999964 33 22333 3446678899999 999887765 478899999973 322211111 1234
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC-eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEE
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 230 (538)
....++|+|+++.++++...++.|.+|++.+.. ......... ......+++++|++..++++...++.|.+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--------GLEGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--------CCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 567899999995444444458899999997432 211111100 11235678899985444456667799999
Q ss_pred EEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCcccccc
Q 009266 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (538)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (538)
|++.+....... ...............++|+|+|++|+++. .+.|.+|++......
T Consensus 153 ~d~~~~g~l~~~---------~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~------------- 210 (330)
T PRK11028 153 FTLSDDGHLVAQ---------EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE------------- 210 (330)
T ss_pred EEECCCCccccc---------CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-------------
Confidence 999763211100 00000000123467899999999987776 568999998742100
Q ss_pred ccccCCCCccccCCCCCCCCcccCCceeecc----ccceeeeEEEEecCCCcEEEEecc-CCeEEEeeccCcceeEEeec
Q 009266 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGH----RNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGGELIRVIEA 383 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~v~~~s~~~~~l~~gs~-dg~i~iwd~~~~~~~~~~~~ 383 (538)
......+... ........+.+ +|++++|+++.. ++.|.+|++........+.+
T Consensus 211 ---------------------~~~~~~~~~~p~~~~~~~~~~~i~~-~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 211 ---------------------IECVQTLDMMPADFSDTRWAADIHI-TPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred ---------------------EEEEEEEecCCCcCCCCccceeEEE-CCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 0001111110 00111335777 999999998854 68999999865432222222
Q ss_pred Cc---ceeeEEeecCCCCeEEEeec-CCceEEecCC
Q 009266 384 DR---HVVNCIEPHPHSTVLASSGI-ESDIKILTPN 415 (538)
Q Consensus 384 h~---~~v~~~~~s~~~~~l~s~~~-dg~v~vw~~~ 415 (538)
+. .....++|+|+|++|++++. +++|.+|++.
T Consensus 269 ~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 269 HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 21 24578999999999887775 8999999874
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=3.4e-19 Score=146.92 Aligned_cols=209 Identities=22% Similarity=0.271 Sum_probs=162.1
Q ss_pred CCcCcEEEEEEcCCC-----CEEEEecCCCeEEEEECCC--Ccee-eee-----ccCCCCCeEEEEEeecCCCceEEEEe
Q 009266 59 KHRGCVNTVSFNTDG-----DILISGSDDRRVILWDWKT--ERVK-LSF-----HSGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g-----~~l~t~~~d~~i~iw~~~~--~~~~-~~~-----~~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
.|.-+++.+.|.|+. .+|||++ -.+|||.+.. .+.. ... ...+..++++..|+. .+.++|.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne-~dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE-VDPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccccc-CCcceeEeec
Confidence 488899999999975 3677665 3799999873 2211 111 134667999999987 3778999999
Q ss_pred CCCcEEEeecccCce--eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 126 ADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
-|.+..||++.++.. +. ..+-.|...|..|+|...+..+|++++.||.||+||++.......+...+. ..
T Consensus 171 iDTTCTiWdie~~~~~~vk-TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-------~~ 242 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVK-TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-------PS 242 (364)
T ss_pred ccCeEEEEEEeecccccee-eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-------CC
Confidence 999999999998732 33 346789999999999998888999999999999999998765544432221 23
Q ss_pred eeeEEEEEcCCCCcEEEEEeCC-CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-CEEEEEcC
Q 009266 204 VNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYND 281 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~ 281 (538)
.++..++|++++.+++|+-..+ ..|.|.|+|... .+...+..|.+.|++++|.|.. ..|+++++
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------------tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------------TPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------------cceehhhcCcccccceEecCCCCceeeecCC
Confidence 4788999999988998886655 579999999753 2445566789999999999964 57888887
Q ss_pred C-eEEEeeccCC
Q 009266 282 E-FIYLFTQDMG 292 (538)
Q Consensus 282 ~-~i~~~d~~~~ 292 (538)
+ .+.+||+...
T Consensus 309 D~qaliWDl~q~ 320 (364)
T KOG0290|consen 309 DCQALIWDLQQM 320 (364)
T ss_pred cceEEEEecccc
Confidence 7 7999999864
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=9.1e-20 Score=157.23 Aligned_cols=162 Identities=20% Similarity=0.249 Sum_probs=136.1
Q ss_pred cCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCce--------eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERV--------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 61 ~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
..+|.++.|.++.. .||||+.|..|+||.+..+.. ....+..|...|+++.|+| +|.+|++|+.+|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeeeecCCCceEE
Confidence 46899999999766 999999999999998864332 1223578999999999999 999999999999999
Q ss_pred Eeecc--------c------CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCC
Q 009266 132 HAQIL--------E------RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (538)
Q Consensus 132 vwd~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (538)
+|... + ...+..+.+.+|...|..++|+|++ +++++++.|..+++||+..++....+..+
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh----- 164 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDH----- 164 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeecccc-----
Confidence 99876 2 2244556688999999999999999 78999999999999999999988777653
Q ss_pred CCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 198 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
...+..++|.|- .+++++-+.|...+.+.+...
T Consensus 165 -----~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 165 -----EHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred -----ccccceeecchh-hhhhhhhccCcccceeeeeee
Confidence 347899999998 689999999887777777654
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=7.2e-19 Score=147.12 Aligned_cols=222 Identities=14% Similarity=0.093 Sum_probs=167.9
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec-
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI- 135 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~- 135 (538)
-..+|+|.+|++++..+|.+-....|.||...... ..+++ ..|...|+.|.|+| ..+.|++|+.|..-+||..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap--~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAP--KSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecC--CCCceeEccCCCCccccccC
Confidence 45789999999999999999999999999987655 33444 88999999999999 9999999999999999998
Q ss_pred ccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCC
Q 009266 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (538)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 215 (538)
..++..++..+..+...++++.|+|.. +.|++|+.-..|.||-++...--..-+ |.. ......|.++.|+|.
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsK-hik-----kPirStv~sldWhpn- 157 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSK-HIK-----KPIRSTVTSLDWHPN- 157 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhh-hhC-----CccccceeeeeccCC-
Confidence 566667777788899999999999998 789999999999999887654322111 100 013447999999997
Q ss_pred CcEEEEEeCCCeEEEEEcCCccccCCC---CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccC
Q 009266 216 ANLFAVAGSDEYTRLYDIRKYKWDGST---DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (538)
Q Consensus 216 ~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (538)
+-+|++|+.|+..|+|..--..+.... ..+.....-++........+.+..+.|+|.|..|+-.+ +..+.+-|...
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 689999999999999987544332221 11111111111122224467899999999999998776 66888888765
Q ss_pred C
Q 009266 292 G 292 (538)
Q Consensus 292 ~ 292 (538)
.
T Consensus 238 p 238 (361)
T KOG1523|consen 238 P 238 (361)
T ss_pred C
Confidence 4
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=6e-18 Score=144.50 Aligned_cols=239 Identities=15% Similarity=0.256 Sum_probs=175.5
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC--CcEEEeecccC
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--GQVRHAQILER 138 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d--g~v~vwd~~~~ 138 (538)
...+..+.|+.+...|..|+.+| .++|+.......... ......|--+-|+. .++|..+.+ +.+++.+++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeeccc----ceeEEEecCCCceEEEEEcccC
Confidence 45677788999999999999998 688887654432222 22233566666754 667666654 45889998877
Q ss_pred ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
..+.... ....|.++.++.+ .|+++-.+ .|+|||++..+.+.++...+. +...+.++.+++. +.+
T Consensus 79 ~~ICe~~---fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~-------n~~gl~AlS~n~~-n~y 143 (391)
T KOG2110|consen 79 TTICEIF---FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPP-------NPKGLCALSPNNA-NCY 143 (391)
T ss_pred ceEEEEe---cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCC-------CccceEeeccCCC-Cce
Confidence 7666543 3467999999874 35555554 499999999999888765433 3334666666665 356
Q ss_pred EEEEe--CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-C-eEEEeeccCCCC
Q 009266 219 FAVAG--SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E-FIYLFTQDMGLG 294 (538)
Q Consensus 219 l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~-~i~~~d~~~~~~ 294 (538)
++.-+ ..|.|+|||+.+.+ +...+..|.+.+.+++|+++|.+||++++ | -||||.+..+
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~---------------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-- 206 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQ---------------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-- 206 (391)
T ss_pred EEecCCCCCceEEEEEcccce---------------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc--
Confidence 66432 46899999998865 35566689999999999999999999995 4 4899999874
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccC
Q 009266 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~ 374 (538)
..+..|+.-..++.|.+++| +|++++|++.+..++|+||.+..
T Consensus 207 ------------------------------------~kl~eFRRG~~~~~IySL~F-s~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 ------------------------------------QKLYEFRRGTYPVSIYSLSF-SPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ------------------------------------cEeeeeeCCceeeEEEEEEE-CCCCCeEEEecCCCeEEEEEecc
Confidence 34445554444667999999 99999999999999999999853
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=4.3e-19 Score=146.33 Aligned_cols=289 Identities=14% Similarity=0.175 Sum_probs=203.9
Q ss_pred eeEEcCCcCcEEEEEEcC---CCCEEEEecC----CCeEEEEEC--CCCceeeeeccCCCCCeEEEEEeecCCC-----c
Q 009266 54 YAKLDKHRGCVNTVSFNT---DGDILISGSD----DRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDD-----R 119 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~---~g~~l~t~~~----d~~i~iw~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~-----~ 119 (538)
+..+..+ -.+.++.|+. .+.+||.|+. .+.|.|-.+ .+++.+..-...|.-+++.+.|.| +. .
T Consensus 38 iy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiP--d~~g~~pd 114 (364)
T KOG0290|consen 38 IYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIP--DSKGVYPD 114 (364)
T ss_pred EEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecC--CccccCcc
Confidence 4444433 4688899984 2457888875 356766654 445554443357899999999999 44 4
Q ss_pred eEEEEeCCCcEEEeeccc--Cceeeee-----eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe---eeee
Q 009266 120 SIVTCAADGQVRHAQILE--RGGVETK-----LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELF 189 (538)
Q Consensus 120 ~l~s~~~dg~v~vwd~~~--~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~ 189 (538)
+||+++ -.+|+|.+.. ....... .-..+..++++..|+.-.+++|.+++-|-+..|||+.++.. ..++
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 566665 4799999873 2221111 12345678999999998889999999999999999999733 2222
Q ss_pred eecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEE
Q 009266 190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (538)
-. |...|..++|...+..+||+.+.||.||+||+|...-. ++.+.. .....+...++|
T Consensus 193 IA----------HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~-----------p~~~~pLlRLsw 250 (364)
T KOG0290|consen 193 IA----------HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIYED-----------PSPSTPLLRLSW 250 (364)
T ss_pred Ee----------cCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEecC-----------CCCCCcceeecc
Confidence 22 55589999999976789999999999999999986521 111111 111457788999
Q ss_pred cCCC-CEEEEEcC--CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeee
Q 009266 270 SDQS-ELLVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (538)
Q Consensus 270 s~~~-~~l~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (538)
+++. +++|+... ..|.|.|++.. ..++..+++|... |+
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P-------------------------------------~tpva~L~~H~a~--VN 291 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVP-------------------------------------CTPVARLRNHQAS--VN 291 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCC-------------------------------------CcceehhhcCccc--cc
Confidence 9864 56777663 37999999864 4567889999997 99
Q ss_pred EEEEecCC-CcEEEEeccCCeEEEeeccCcce------eEEeecCcceeeEEeecCCCC-eEEEeecCCceEE
Q 009266 347 GVNFFGPK-CEYVVSGSDCGRIFIWKKKGGEL------IRVIEADRHVVNCIEPHPHST-VLASSGIESDIKI 411 (538)
Q Consensus 347 ~v~~~s~~-~~~l~~gs~dg~i~iwd~~~~~~------~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~v 411 (538)
.++| .|. ...|++++.|..+.|||+...-. +..+. ..+.|+.+.|++... +|+.+.. +++.+
T Consensus 292 gIaW-aPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 292 GIAW-APHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ceEe-cCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 9999 664 56899999999999999975422 22223 456899999997654 7776653 34433
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-18 Score=164.14 Aligned_cols=345 Identities=14% Similarity=0.134 Sum_probs=226.4
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
.+|+++++|+|..+|.|.||.--....- . ...+.+..|...|++++|+++|.+|++||..|.+
T Consensus 213 ~spn~~~~Aa~d~dGrI~vw~d~~~~~~----------------~-~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VL 275 (792)
T KOG1963|consen 213 LSPNERYLAAGDSDGRILVWRDFGSSDD----------------S-ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVL 275 (792)
T ss_pred eccccceEEEeccCCcEEEEeccccccc----------------c-ccceEEEecccccceeEEecCCceEeecccceEE
Confidence 6899999999999999999975420110 0 1135678899999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee-ee--------ccccCCCcEEE
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KL--------LGKHQGRAHKL 156 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~--------~~~~~~~v~~~ 156 (538)
.+|.+.+++ ++++..-.++|..+.++| ++.+.+....|+.|.+....+...... .. -.+..+-.+.+
T Consensus 276 v~Wq~~T~~--kqfLPRLgs~I~~i~vS~--ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 276 VLWQLETGK--KQFLPRLGSPILHIVVSP--DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred EEEeecCCC--cccccccCCeeEEEEEcC--CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 999999988 677788889999999999 999999999999999998754432211 00 11124456788
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCc-ceeeeeEEEEEcCCCCcEEEEEe--------CC--
Q 009266 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY-MTVVNLNAIAIDPRNANLFAVAG--------SD-- 225 (538)
Q Consensus 157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~--------~d-- 225 (538)
++.|.- +.++-.+..|.|.+||+-+.+.+..+..-......+. .....+++++.+-. +++++|.- .+
T Consensus 352 ~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~-gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 352 SIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF-GSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred EEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-ceEEEEeeeeehhhhccCce
Confidence 899954 5678888999999999999887766655433333333 34557888888886 78888864 22
Q ss_pred CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCC-EEEEEc-CCeEEEeeccCCCCCCCCCCCC
Q 009266 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (538)
-.+++|-.......-. ....+...|...+...++.+ ... .+++++ ++.+++|-+..........
T Consensus 430 ~~LKFW~~n~~~kt~~----------L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~--- 496 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFI----------LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS--- 496 (792)
T ss_pred EEEEEEEEcCCcceeE----------EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc---
Confidence 3467787654321100 00112233454455555544 332 566665 7799999986533222211
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceeec--cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc-ceeE
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIR 379 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~-~~~~ 379 (538)
..-.....+ |..+ +.+++| +.+|..|+++ .+++|.+||..+. .+..
T Consensus 497 ---------------------------s~W~c~~i~sy~k~~--i~a~~f-s~dGslla~s-~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 497 ---------------------------SNWTCKAIGSYHKTP--ITALCF-SQDGSLLAVS-FDDTITIWDYDTKNELLC 545 (792)
T ss_pred ---------------------------cceEEeeeeccccCc--ccchhh-cCCCcEEEEe-cCCEEEEecCCChhhhhc
Confidence 000111111 3333 888998 9999766655 5889999999873 3333
Q ss_pred EeecCcceeeEEeecCCCC--eEEEeecCCceEEecCCCC
Q 009266 380 VIEADRHVVNCIEPHPHST--VLASSGIESDIKILTPNAA 417 (538)
Q Consensus 380 ~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~v~vw~~~~~ 417 (538)
.......++..+.+..... ..+.......+.+|++.+.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~ 585 (792)
T KOG1963|consen 546 TEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSM 585 (792)
T ss_pred cccccccchHhHhhhcccccccceeeccCceEehHhhhhh
Confidence 3322233444444433221 2233334567888887654
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=5.2e-19 Score=172.76 Aligned_cols=316 Identities=19% Similarity=0.191 Sum_probs=205.9
Q ss_pred EEeeeeeEEcCCcCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCC-------ceeeeeccCCCCCeEEEEEeecCCCce
Q 009266 49 LRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDDRS 120 (538)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~ 120 (538)
.+-.++..|..|...|..++.++.. .+++|||.||+||+|++..- +...++ ......+.++...+ .+..
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~--~~~~ 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCG--NGDQ 1112 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEecc--CCCe
Confidence 3445577888999999999998754 99999999999999997532 122233 33567899999999 9999
Q ss_pred EEEEeCCCcEEEeecccCce-------eeeeeccccCCCcEEEEEcCCCC-cEEEEEcCCCcEEEEecCCCCeeeeeeec
Q 009266 121 IVTCAADGQVRHAQILERGG-------VETKLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (538)
Q Consensus 121 l~s~~~dg~v~vwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 192 (538)
+|+++.||.|++..+..... ............|..-+|..... ..|+.+..-+.|..||++.......++..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 99999999999999875211 11111111222233334443322 37888888899999999988877766543
Q ss_pred ccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC
Q 009266 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (538)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 272 (538)
. ..+.|++++.+|. ++++++|+..|.+.+||+|-+..... +...+..+|+.+..+|-
T Consensus 1193 ~--------~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~s--------------w~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1193 L--------RHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILS--------------WEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred c--------cccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeec--------------ccCcccCCcceEEeecc
Confidence 3 3347999999997 78999999999999999997653322 22234567777777764
Q ss_pred ---CCEEEEEcC---CeEEEeeccCCCCCCCCCCC-CccccccccccCCCCccccCCCCCCCCcccCCceeeccccceee
Q 009266 273 ---SELLVSYND---EFIYLFTQDMGLGPNPPPSS-PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (538)
Q Consensus 273 ---~~~l~~~~~---~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (538)
....++++. +.|.+|++.++.+...+..+ ........ ..+.. ... ......
T Consensus 1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~-----------~Ps~~----~~k-------p~~~~~ 1307 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYA-----------LPSND----ARK-------PDSLAG 1307 (1431)
T ss_pred CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhh-----------ccccc----CCC-------CCcccc
Confidence 245555543 47999999998655554322 11000000 00000 000 111112
Q ss_pred eEEEEecCCCcEEEEeccCCeEEEeeccCccee-----------------------------------------------
Q 009266 346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI----------------------------------------------- 378 (538)
Q Consensus 346 ~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~----------------------------------------------- 378 (538)
..+++ ...+.++.+|+.|..||.||....+..
T Consensus 1308 ~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~ 1386 (1431)
T KOG1240|consen 1308 ISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRE 1386 (1431)
T ss_pred eeeec-ccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhccc
Confidence 22333 334568899999999999997432111
Q ss_pred -EEe--------ecCcceeeEEeecCCC-CeEEEeecCCceEEec
Q 009266 379 -RVI--------EADRHVVNCIEPHPHS-TVLASSGIESDIKILT 413 (538)
Q Consensus 379 -~~~--------~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~vw~ 413 (538)
..+ ..|..+|+.|++.... .+|++++.||.|+||.
T Consensus 1387 ~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1387 NQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 1355678888776544 4889999999999994
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=2.1e-18 Score=163.23 Aligned_cols=257 Identities=16% Similarity=0.190 Sum_probs=178.3
Q ss_pred CcCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCCcee-----eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 60 HRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 60 h~~~v~~~~~s~-~g~~l~t~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
-...|+|+.|+| +..+||.|..+|+|.+||+..+... ......|..+++.+.|.....+.-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467899999999 5678899999999999999876642 2223578999999999873334559999999999999
Q ss_pred ecccCceeeee-ec---c------ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeee--eeeecccCCCCCcc
Q 009266 134 QILERGGVETK-LL---G------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE--LFTCRPIDDRRNYM 201 (538)
Q Consensus 134 d~~~~~~~~~~-~~---~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~ 201 (538)
+++.-...... .+ . .....+++++|.+..++.|+.|+..|.|..-.....+... .++.+.. . ..
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~--~--~~ 396 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST--F--IT 396 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc--c--cc
Confidence 88654331110 00 0 1234689999999999999999999998874433322221 1111111 0 11
Q ss_pred eeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEc
Q 009266 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN 280 (538)
Q Consensus 202 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~ 280 (538)
|.++|+++.++|-...+|++++ |-+|+||...... .|......+...+++++|||... .++++.
T Consensus 397 h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~--------------~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 397 HIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA--------------SPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred cCcceEeeecCCCccceeeeec-cceeEeccccCCC--------------CcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 5668999999998555666665 9999999987322 23444444566799999999764 445554
Q ss_pred -CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEE
Q 009266 281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (538)
Q Consensus 281 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~ 359 (538)
+|.|.+||+...... +..+...+.. ..+.+.| ++.|+.|+
T Consensus 462 ~~G~l~iWDLl~~~~~------------------------------------Pv~s~~~~~~--~l~~~~~-s~~g~~la 502 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEE------------------------------------PVLSQKVCSP--ALTRVRW-SPNGKLLA 502 (555)
T ss_pred CCCceehhhhhccccC------------------------------------Cccccccccc--ccceeec-CCCCcEEE
Confidence 679999999764322 1222222222 1445555 99999999
Q ss_pred EeccCCeEEEeeccC
Q 009266 360 SGSDCGRIFIWKKKG 374 (538)
Q Consensus 360 ~gs~dg~i~iwd~~~ 374 (538)
+|...|++++|++..
T Consensus 503 vGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 503 VGDANGTTHILKLSE 517 (555)
T ss_pred EecCCCcEEEEEcCc
Confidence 999999999999853
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=4.1e-19 Score=152.62 Aligned_cols=211 Identities=16% Similarity=0.178 Sum_probs=159.3
Q ss_pred eEEcCCcCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCCcee------eeeccCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 55 AKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVK------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~-~g~~l~t~~~d~~i~iw~~~~~~~~------~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
-...||+++|..++|+| +...||+||.|.+|+||.+..+... ...+.+|...|..++|+|. -.+.|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt-A~NVLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT-APNVLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc-chhhHhhccCC
Confidence 34679999999999999 6678999999999999998755331 3334899999999999993 56789999999
Q ss_pred CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
.+|.+|++.++..+.. +. |...|.++.|+.+| .+|++++.|..|||||.++++.+..-..|.. ..+ .
T Consensus 154 n~v~iWnv~tgeali~--l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG--------~k~-~ 220 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALIT--LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG--------AKP-A 220 (472)
T ss_pred ceEEEEeccCCceeee--cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccC--------CCc-c
Confidence 9999999999988766 55 99999999999999 6899999999999999999998877654432 222 3
Q ss_pred EEEEcCCCCcEEEEEe---CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CC
Q 009266 208 AIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DE 282 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~ 282 (538)
.+.|-.+ +.++.+|. .+.++-+|+..+... |. ..........|.---|.++..+|..++ ++
T Consensus 221 Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~e--------P~-----~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~ 286 (472)
T KOG0303|consen 221 RAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEE--------PI-----ALQELDTSNGVLLPFYDPDTSIVYLCGKGDS 286 (472)
T ss_pred eeEEecc-CceeeeccccccccceeccCcccccC--------cc-----eeEEeccCCceEEeeecCCCCEEEEEecCCc
Confidence 3445554 55555543 467899999877542 11 000111234455555778887776665 55
Q ss_pred eEEEeeccCCC
Q 009266 283 FIYLFTQDMGL 293 (538)
Q Consensus 283 ~i~~~d~~~~~ 293 (538)
.|+.|.+....
T Consensus 287 ~IRYyEit~d~ 297 (472)
T KOG0303|consen 287 SIRYFEITNEP 297 (472)
T ss_pred ceEEEEecCCC
Confidence 89999987653
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=9.1e-18 Score=135.06 Aligned_cols=245 Identities=14% Similarity=0.140 Sum_probs=168.1
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
.+|.+++|++|...|+|.++.+.+-- +++....-+ .++...++|.++|+.++|. ..+|++|+ ||.|
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~----------s~sa~~~gk-~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V 83 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLD----------SGSAEPPGK-LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLV 83 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhh----------ccccCCCCC-cceeeccccCCCeeeeeee--hhheeecc-CceE
Confidence 35778899999999999999987311 111111111 1233458999999999998 55777776 4999
Q ss_pred EEEECCCCce------eeee-ccCCC-----CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCc
Q 009266 86 ILWDWKTERV------KLSF-HSGHN-----DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (538)
Q Consensus 86 ~iw~~~~~~~------~~~~-~~~~~-----~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v 153 (538)
+-|....... +... ...|. ..|++|...| ..+.++.++.|+.++-||+++++.... +++|+..|
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP--~enSi~~AgGD~~~y~~dlE~G~i~r~--~rGHtDYv 159 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP--SENSILFAGGDGVIYQVDLEDGRIQRE--YRGHTDYV 159 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc--CCCcEEEecCCeEEEEEEecCCEEEEE--EcCCccee
Confidence 9998753221 1111 11222 3688999998 777777777999999999999987765 99999999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 009266 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 233 (538)
.+++--... ..+++|+.||++|+||.++++.++.+...........-....|.+++-+. ..+++|+ ...+.+|.+
T Consensus 160 H~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhL 234 (325)
T KOG0649|consen 160 HSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHL 234 (325)
T ss_pred eeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEec
Confidence 999984444 25899999999999999999998887654432221111233677787765 3666654 457899999
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccC
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (538)
+..+....+. -..++..+.|..+ .+++++ .+.+.-|.+..
T Consensus 235 rsse~t~vfp----------------ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 235 RSSESTCVFP----------------IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cCCCceEEEe----------------cccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 9876322211 1345667777543 455555 44788887653
No 198
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=4e-19 Score=152.64 Aligned_cols=208 Identities=17% Similarity=0.198 Sum_probs=162.2
Q ss_pred CCCCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC-CCEEEEe
Q 009266 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISG 79 (538)
Q Consensus 1 ~~~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~ 79 (538)
+|.+|.|.+...||+|+.|.+|.||.+..+.+... -..++..|.||...|.-++|+|. .+.|+++
T Consensus 85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~--------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD--------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred cccccCccCCceeecCCCCceEEEEECCCcccccC--------------cccceEEEeecceeEEEEeecccchhhHhhc
Confidence 57889999999999999999999999986655422 11567889999999999999995 4788999
Q ss_pred cCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC-CcEEEEE
Q 009266 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-RAHKLAI 158 (538)
Q Consensus 80 ~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~-~v~~~~~ 158 (538)
+.|.+|.||++.+|+.+.++ . |...|+++.|+. +|.+|++++.|..|||||.++++.+.. -.+|.+ .-..+.|
T Consensus 151 g~Dn~v~iWnv~tgeali~l-~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e--~~~heG~k~~Raif 224 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITL-D-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSE--GVAHEGAKPARAIF 224 (472)
T ss_pred cCCceEEEEeccCCceeeec-C-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeee--cccccCCCcceeEE
Confidence 99999999999999988887 3 999999999999 999999999999999999999988766 355654 3455667
Q ss_pred cCCCCcEEEEEc---CCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 009266 159 EPGSPHVFYTCG---EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 159 ~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
..++ .++.||. .+..+-+|+...-+....+.... ....|.---|.|+.+.+.++|-.|+.||.|.+..
T Consensus 225 l~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--------tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 225 LASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELD--------TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eccC-ceeeeccccccccceeccCcccccCcceeEEec--------cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 7777 4444442 35679999877654332222111 2234666667887555667777899999999987
Q ss_pred cc
Q 009266 236 YK 237 (538)
Q Consensus 236 ~~ 237 (538)
..
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 53
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.3e-18 Score=165.76 Aligned_cols=296 Identities=13% Similarity=0.153 Sum_probs=198.5
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC--CCCEEEEecCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDD 82 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~t~~~d 82 (538)
-++|..+.++++...-.|+|||.+.++++.. | ..-......|+.|.+-. +-.+|++|+.|
T Consensus 1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~-F-----------------~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNG-F-----------------DNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred eecCCCceeEEcCCcceEEEEecccCceecc-c-----------------cCCCCCCCccceeeeecccchhheeeeccC
Confidence 4677888899998788999999998887522 0 00112346788888876 45789999999
Q ss_pred CeEEEEECC-CC----ceeeee------ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC
Q 009266 83 RRVILWDWK-TE----RVKLSF------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (538)
Q Consensus 83 ~~i~iw~~~-~~----~~~~~~------~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 151 (538)
|.||||+-. .+ +.+..+ +.+..+.=.-+.|.. ...+|++++.-..|+|||........... .+...
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ--~~G~Ll~tGd~r~IRIWDa~~E~~~~diP-~~s~t 1209 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ--QSGHLLVTGDVRSIRIWDAHKEQVVADIP-YGSST 1209 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh--hCCeEEecCCeeEEEEEecccceeEeecc-cCCCc
Confidence 999999632 22 121111 111111113456776 55666666667899999998766554432 23455
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee---eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeE
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT---ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 228 (538)
.|+++.-.....+++++|..||.|++||.+....- ...+.| ....+|..+.+.+.|-..|++|+.+|.|
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h--------~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREH--------NDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeeccc--------CCcccceeEEeecCCCcceeeeccCCeE
Confidence 67777666544479999999999999999866442 222222 1222488899988744469999999999
Q ss_pred EEEEcCCccccCCCCCCCCCcccCCCCccCCC--ccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCcccc
Q 009266 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE--QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTR 306 (538)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 306 (538)
++||+|....... .....+- .+..+++..++....+|+|+...|+||++...+.....
T Consensus 1282 ~~~DlR~~~~e~~------------~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k-------- 1341 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETF------------LTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK-------- 1341 (1387)
T ss_pred EEEecccCccccc------------ceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc--------
Confidence 9999998421111 1111111 12489999999999999999999999998754322111
Q ss_pred ccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
....|.+.... .+.+++| +|..-+||+|+.|..|.||......
T Consensus 1342 -------------------------~n~~F~~q~~g-s~scL~F-HP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1342 -------------------------YNPGFMGQRIG-SVSCLAF-HPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -------------------------cCcccccCcCC-Ccceeee-cchhHhhhhccCCceEEEeecCCcC
Confidence 00111121111 2678998 9999999999999999999876543
No 200
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.82 E-value=3.6e-17 Score=150.98 Aligned_cols=320 Identities=15% Similarity=0.139 Sum_probs=196.8
Q ss_pred EEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 009266 13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT 92 (538)
Q Consensus 13 l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~ 92 (538)
+++-..++.|.|.|..+.+.+ ..+......-..+.|+|+|+++.+++.||.|.++|+.+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~---------------------~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~ 67 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVV---------------------ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT 67 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEE---------------------EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS
T ss_pred EEEecCCCEEEEEECCCCeEE---------------------EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc
Confidence 456667899999999988775 45554444445578999999999999999999999999
Q ss_pred CceeeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeecccCceeeeeeccc-----cCCCcEEEEEcCCCCcEE
Q 009266 93 ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGK-----HQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 93 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l 166 (538)
++.+.++..+ .....+++++ +|++++++. ..+.+.++|..+.+.+......+ ...++..|..+|..+.++
T Consensus 68 ~~~v~~i~~G--~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV 143 (369)
T PF02239_consen 68 GKVVATIKVG--GNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV 143 (369)
T ss_dssp SSEEEEEE-S--SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred ccEEEEEecC--CCcceEEEcC--CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence 9998888433 3578899999 999998776 58999999999887776533322 234678888888885555
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 246 (538)
++.-..+.|.+.|....+.+..-... .........|+|++..++++......|.++|..++++......+.
T Consensus 144 v~lkd~~~I~vVdy~d~~~~~~~~i~---------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~ 214 (369)
T PF02239_consen 144 VNLKDTGEIWVVDYSDPKNLKVTTIK---------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK 214 (369)
T ss_dssp EEETTTTEEEEEETTTSSCEEEEEEE-----------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS
T ss_pred EEEccCCeEEEEEeccccccceeeec---------ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc
Confidence 66666688988898776544322211 111356789999843344555677899999999876543322211
Q ss_pred CCcccCCCCccCCCccceEEEEEcCC-CCEEEEEc----------CCeEEEeeccCCCCCCCCCCCCccccccccccCCC
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN----------DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (538)
..|..++..+ .+|. |...++.. .+.+.+|+...
T Consensus 215 -----------~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~------------------------ 258 (369)
T PF02239_consen 215 -----------KPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA------------------------ 258 (369)
T ss_dssp -----------SBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB------------------------
T ss_pred -----------cccccccccc-cCCCcceEEeeccccceecccccCCccccchhhc------------------------
Confidence 1122233333 2222 22233332 22233343332
Q ss_pred CccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe----ccCCeEEEeeccCcceeEEeecCc-ceeeE
Q 009266 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG----SDCGRIFIWKKKGGELIRVIEADR-HVVNC 390 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g----s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~ 390 (538)
.+.++.+...... .-+.. +|++++|.+. ...++|.|+|.++.+.+.++.... ..+..
T Consensus 259 --------------wkvv~~I~~~G~g---lFi~t-hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h 320 (369)
T PF02239_consen 259 --------------WKVVKTIPTQGGG---LFIKT-HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVH 320 (369)
T ss_dssp --------------TSEEEEEE-SSSS-----EE---TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEE
T ss_pred --------------CeEEEEEECCCCc---ceeec-CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEec
Confidence 4455566654443 34444 8999999987 445899999999998887775333 35899
Q ss_pred EeecCCCCeEEEeecC--CceEEecCCCCccc
Q 009266 391 IEPHPHSTVLASSGIE--SDIKILTPNAADRA 420 (538)
Q Consensus 391 ~~~s~~~~~l~s~~~d--g~v~vw~~~~~~~~ 420 (538)
+.|+++|+.+..+..+ +.|.|||..+.+..
T Consensus 321 ~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 321 MEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp EEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred cEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 9999999966555444 36999999987653
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=2.2e-17 Score=141.08 Aligned_cols=237 Identities=11% Similarity=0.124 Sum_probs=174.5
Q ss_pred CCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC--CcEEEEecC
Q 009266 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLR 181 (538)
Q Consensus 104 ~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~ 181 (538)
...+..+.|+. +...|..|+.+| .+++.......... .......|.-+-|+. .++|..+.+ +.+++++++
T Consensus 5 ~~ti~~~~~Nq--d~~~lsvGs~~G-yk~~~~~~~~k~~~--~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQ--DSTLLSVGSKDG-YKIFSCSPFEKCFS--KDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred Ccceeeeeecc--ceeEEEccCCCc-eeEEecCchHHhhc--ccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcc
Confidence 34567777887 888888888877 57777654333111 111223455556665 355555444 459999999
Q ss_pred CCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCc
Q 009266 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (538)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (538)
.+..+..+.. +.+|.++.++.+ .|++.-.+ .|+|||++..+++.++.. ...+.
T Consensus 77 k~~~ICe~~f-----------pt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t------------~~~n~ 129 (391)
T KOG2110|consen 77 KKTTICEIFF-----------PTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIET------------TPPNP 129 (391)
T ss_pred cCceEEEEec-----------CCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhc------------cCCCc
Confidence 8887777663 337999999864 44444443 499999999987655322 11234
Q ss_pred cceEEEEEcCCCCEEEEEc---CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec
Q 009266 262 VGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (538)
Q Consensus 262 ~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
..+.++++++.+.+||.-+ .|.|++||+.+ .+....+..
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--------------------------------------l~~v~~I~a 171 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--------------------------------------LQPVNTINA 171 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEccc--------------------------------------ceeeeEEEe
Confidence 5577777777777888654 56899999877 556778889
Q ss_pred cccceeeeEEEEecCCCcEEEEeccCCe-EEEeeccCcceeEEeecCc--ceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEADR--HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 339 ~~~~~~i~~v~~~s~~~~~l~~gs~dg~-i~iwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
|.+. +.+++| +++|.+||++|..|+ ||||.+.+|+.+..|+-.. ..|.+++|+|++++|++.|..++|.||.+.
T Consensus 172 H~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 172 HKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred cCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 9987 999999 999999999999997 7999999999999987433 468999999999999999999999999886
Q ss_pred C
Q 009266 416 A 416 (538)
Q Consensus 416 ~ 416 (538)
.
T Consensus 249 ~ 249 (391)
T KOG2110|consen 249 K 249 (391)
T ss_pred c
Confidence 5
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=7.1e-19 Score=143.11 Aligned_cols=284 Identities=17% Similarity=0.195 Sum_probs=189.7
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEc-CCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
..+|.+|..-|.|++|.+++..-. ..++ .|...|+.+.--|+ ..|.|-+.|+.+.+|
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~r~~---------------------~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTERDL---------------------PLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred chhhhcccccceEEEEEeecCccc---------------------hhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 346999999999999999976543 3355 46788999999887 568889999999999
Q ss_pred ECCCCceeeeeccCCCCCeEEEEEeecC---CC----ceEEEEeCCC-cEEEeecccCceeee--eeccccCCCcEEEEE
Q 009266 89 DWKTERVKLSFHSGHNDNVFQAKIMPFT---DD----RSIVTCAADG-QVRHAQILERGGVET--KLLGKHQGRAHKLAI 158 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~----~~l~s~~~dg-~v~vwd~~~~~~~~~--~~~~~~~~~v~~~~~ 158 (538)
++.-+..+ .-|.-.++++.|.++. .+ ..++.-+... .+.+-|......+.. ..-.+..+.+.+..+
T Consensus 83 ~ia~s~~i----~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 83 TIAYSAFI----SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EccCcceE----EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 98865432 2344556666666510 11 1122111110 011122111111111 111233455666664
Q ss_pred cC-CC-CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 159 EP-GS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 159 ~~-~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
.. .+ ..+|++|..+|.|.+||+.++..+..++.......+...+..+|.++.|.+. ...=++|+.+..+..|++...
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeeccc
Confidence 32 22 2456778889999999999986554444332222233346678999999886 456678888888999988753
Q ss_pred cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCC
Q 009266 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (538)
... ........-.+..|..+.+-|+++.+|+++ +++|+||+.++
T Consensus 238 ~gs-----------lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt------------------------ 282 (323)
T KOG0322|consen 238 TGS-----------LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT------------------------ 282 (323)
T ss_pred cCc-----------ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc------------------------
Confidence 210 011222222355788899999999999999 77999999988
Q ss_pred CccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
..++..++-|... |++++| +|+..++|+++.|++|.+|++
T Consensus 283 --------------l~pLAVLkyHsag--vn~vAf-spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 --------------LNPLAVLKYHSAG--VNAVAF-SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --------------CCchhhhhhhhcc--eeEEEe-CCCCchhhhccCCceEEeeec
Confidence 5667888889876 999999 999999999999999999986
No 203
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-17 Score=162.52 Aligned_cols=343 Identities=14% Similarity=0.076 Sum_probs=200.8
Q ss_pred CCCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC
Q 009266 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (538)
Q Consensus 2 ~~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~ 81 (538)
+.|-.++++.+++||+.||+||||+...-..- . ...+...++..-...+.++.+.+.+..+|.++.
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------------~--~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------------G--GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcC------------c--ceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 46778899999999999999999998731110 0 111222333335678999999999999999999
Q ss_pred CCeEEEEECCCCce--e----eeeccCCC-C-CeEEEEEeecCCCc-eEEEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 82 DRRVILWDWKTERV--K----LSFHSGHN-D-NVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 82 d~~i~iw~~~~~~~--~----~~~~~~~~-~-~v~~l~~~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
||.|++.++..-.. . ......+. + .|...+|.. ..+. .|+.+..-+.|..||+++.............+.
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~-~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA-IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccc-cccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 99999999865211 0 11111222 2 333444443 2334 788888889999999988766655445555678
Q ss_pred cEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC--cEEE-EEe-CCCeE
Q 009266 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFA-VAG-SDEYT 228 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~-~~~-~dg~v 228 (538)
|++++.+|.+ +++++|+..|.+.+||++-+..+.....+ +..+++.+..+|--+ ...+ ++. ..+.|
T Consensus 1198 vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P---------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1198 VTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHP---------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred eeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCc---------ccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 9999999999 79999999999999999988877665422 223556565555322 3444 444 57889
Q ss_pred EEEEcCCccccCCCCCC--CCC-cccCCCC--ccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCC-CCCCCC
Q 009266 229 RLYDIRKYKWDGSTDFG--QPA-DYFCPPN--LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN-PPPSSP 302 (538)
Q Consensus 229 ~iwd~~~~~~~~~~~~~--~~~-~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~-~~~~~~ 302 (538)
.+|++.++......-.+ .|. ....+.. ...+....+.+..-.+++-.+.++++..|+.||........ .++...
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s 1347 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPS 1347 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcc
Confidence 99999988433222221 111 1111111 00111122333333344444445557799999988765441 111110
Q ss_pred cccccc----ccccCCCCccccC-----CCCCCC--------CcccCCceeeccccceeeeEEEEecCCCcEEEEeccCC
Q 009266 303 VSTRSE----ASEMGSDHTSAAS-----PSTANT--------DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (538)
Q Consensus 303 ~~~~~~----~~~~~~~~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg 365 (538)
...... .....++.+.+.. .....+ ........-..|... |+.++++-.+..+|++++.+|
T Consensus 1348 ~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~--Itdma~~~~~q~llvs~s~dG 1425 (1431)
T KOG1240|consen 1348 TSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP--ITDMATLKSEQPLLVSSSRDG 1425 (1431)
T ss_pred ccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccch--hhhhhhhccCccEEEEecCCC
Confidence 000000 0000111111100 000111 001111222345554 777777545567999999999
Q ss_pred eEEEee
Q 009266 366 RIFIWK 371 (538)
Q Consensus 366 ~i~iwd 371 (538)
.|+||.
T Consensus 1426 ~IkiWk 1431 (1431)
T KOG1240|consen 1426 VIKIWK 1431 (1431)
T ss_pred eeeecC
Confidence 999994
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.3e-19 Score=169.99 Aligned_cols=272 Identities=15% Similarity=0.193 Sum_probs=200.2
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
|.|...+.+++||+.|..|+||..+++.++ ..++||.+.|+.++.+.+..++|++|.|.
T Consensus 196 a~fDrtg~~Iitgsdd~lvKiwS~et~~~l---------------------As~rGhs~ditdlavs~~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSDDRLVKIWSMETARCL---------------------ASCRGHSGDITDLAVSSNNTMIAAASNDK 254 (1113)
T ss_pred eeeccccceEeecCccceeeeeeccchhhh---------------------ccCCCCccccchhccchhhhhhhhcccCc
Confidence 457788999999999999999999999886 56899999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc-Cceeeeeecc-ccCCCcEEEEEcCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLLG-KHQGRAHKLAIEPG 161 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~-~~~~~v~~~~~~~~ 161 (538)
.|++|.+..+.++..+ .+|++.|++|+|+| ..+.+.||++++|+.+- ........+. .....+.++.|...
T Consensus 255 vIrvWrl~~~~pvsvL-rghtgavtaiafsP------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVSVL-RGHTGAVTAIAFSP------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN 327 (1113)
T ss_pred eEEEEecCCCchHHHH-hccccceeeeccCc------cccCCCCCceEeccccccccccCCCCCCcccccceeeeecccc
Confidence 9999999999987665 89999999999999 23778899999999871 1110001111 12245667777777
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
+ .-++|++.++.-..|.+........ .+.-+.++.+-..+.+++-.+-.+.+|++.++.+
T Consensus 328 ~-~~f~Tgs~d~ea~n~e~~~l~~~~~----------------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l--- 387 (1113)
T KOG0644|consen 328 G-DRFLTGSRDGEARNHEFEQLAWRSN----------------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL--- 387 (1113)
T ss_pred c-cccccccCCcccccchhhHhhhhcc----------------ceEEEeccccccccceeeeeeeEeeeeecccchh---
Confidence 7 5689999999988886643221111 1111122212234666677777889999998863
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE-EEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccc
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
.+...+|...+..+.++|-...+ .+++ +|.+.|||+..+.+.
T Consensus 388 ------------~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi------------------------ 431 (1113)
T KOG0644|consen 388 ------------LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI------------------------ 431 (1113)
T ss_pred ------------hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc------------------------
Confidence 45566778899999999966544 3444 789999999875321
Q ss_pred cCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
...+.+|.. +....| |++|..++....-|.++|.....++
T Consensus 432 -------------k~y~~gh~k---l~d~kF-Sqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 432 -------------KHYFIGHGK---LVDGKF-SQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred -------------eeeecccce---eecccc-CCCCceEecCCCCCceEEeccCCCc
Confidence 122234332 667777 9999999988888999998865443
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.6e-19 Score=157.16 Aligned_cols=305 Identities=17% Similarity=0.225 Sum_probs=214.8
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC--CCEEEEecC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISGSD 81 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~t~~~ 81 (538)
..|+..+..|++|+.|..|.+|++.++... ..-..||...|....|-|. -+.|++++.
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------LSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcc--------------------cccccccccchhhhhccCCCCCcCceeccc
Confidence 347788999999999999999999977764 3445689999998899984 478999999
Q ss_pred CCeEEEEECC-CCcee-eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccc-cCC---CcEE
Q 009266 82 DRRVILWDWK-TERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-HQG---RAHK 155 (538)
Q Consensus 82 d~~i~iw~~~-~~~~~-~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~~---~v~~ 155 (538)
||.|++=.+. ++.+. ...+..|.++|..++.-|. ....|.+++.|+.|.-+|++............ +.. ....
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT 286 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence 9999998764 34333 2334789999999999983 45678999999999999998765543322222 223 4678
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCCCCee------eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEE
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT------ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 229 (538)
++..|..++.+++++.+..+++||.+.-... ..+..+.... .....|++++|+.+ +.-|+++..|-.|+
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~----d~~v~ITgl~Ysh~-~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE----DDPVNITGLVYSHD-GSELLASYNDEDIY 361 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc----cCcccceeEEecCC-ccceeeeecccceE
Confidence 9999999889999999999999998754322 2222211111 14457999999987 45566667788899
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCC--ccceEEEEE-cCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCccc
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDE--QVGITGLAF-SDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVST 305 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~-s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~ 305 (538)
++.-..+. -.......|...+.+ ....+| ...|.++-| -|...|+++|++- .|.||+..+
T Consensus 362 LF~~~~~~-G~~p~~~s~~~~~~k-~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t-------------- 425 (559)
T KOG1334|consen 362 LFNKSMGD-GSEPDPSSPREQYVK-RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT-------------- 425 (559)
T ss_pred Eecccccc-CCCCCCCcchhhccc-hhhcccccccccceeeeccCccceEEecCccceEEEEecch--------------
Confidence 99433221 111111111112222 212233 235777766 5788999999974 899999887
Q ss_pred cccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcce
Q 009266 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~ 377 (538)
...++.+.+-... |+|+.- +|--..||+.+-|..|+||-..+.+.
T Consensus 426 ------------------------~eii~~MegDr~V--VNCLEp-HP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 426 ------------------------GEIIRFMEGDRHV--VNCLEP-HPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred ------------------------hHHHHHhhcccce--EeccCC-CCCCchhhccCCccceeeecCCcccc
Confidence 3445555655553 888887 88889999999999999998755443
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=4.7e-18 Score=162.68 Aligned_cols=237 Identities=12% Similarity=0.151 Sum_probs=161.0
Q ss_pred CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC---CcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
+..|+|||..... ...+ ..|...+..++|+| +|+.|+.++.+ ..|++|++.++.......+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEe-ccCCCccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence 4789999986544 3444 56788899999999 99999987653 4699999987765443334443 346899
Q ss_pred cCCCCcEEEEEcCCCcEEEE--ecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 159 EPGSPHVFYTCGEDGLVQHF--DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
+|++..++++...+|.+.|| ++.++.... +.. +...+...+|+|++..+++++..+|..+||.+...
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~----------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTS----------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ecc----------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 99995444445567765555 666655432 221 22246789999984444555556788899987543
Q ss_pred cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCC
Q 009266 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
... ..... +.. ....|+|+|++|+..+...+.+|++.++..
T Consensus 325 ~~~--------------~~~l~-~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---------------------- 365 (429)
T PRK01742 325 GGG--------------ASLVG-GRG--YSAQISADGKTLVMINGDNVVKQDLTSGST---------------------- 365 (429)
T ss_pred CCC--------------eEEec-CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCe----------------------
Confidence 210 00111 111 357899999999888777788899876421
Q ss_pred ccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec--cCcceeEEeecCcceeeEEeec
Q 009266 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK--KGGELIRVIEADRHVVNCIEPH 394 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~s 394 (538)
..+..... ...+.| +|+|++|+.++.++.+.+|.+ .+|+.++.+..|.+.+..++|+
T Consensus 366 -----------------~~lt~~~~---~~~~~~-sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 366 -----------------EVLSSTFL---DESPSI-SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred -----------------EEecCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 11111111 234567 999999999999998888875 3688888998888889999999
Q ss_pred CC
Q 009266 395 PH 396 (538)
Q Consensus 395 ~~ 396 (538)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.5e-17 Score=144.80 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=135.0
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEE
Q 009266 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (538)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~ 286 (538)
.+++|+++ +..|++++.||++|+|+..+... ......|...|.++.|+|+|++|++.+.+..+|
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t---------------~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLT---------------ILEEIAHHAEVKDLDFSPDGKFLASIGADSARV 211 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchh---------------hhhhHhhcCccccceeCCCCcEEEEecCCceEE
Confidence 78999997 78999999999999999776542 233445678999999999999999999779999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCC--------------ccccC--CCCCCC-CcccCCceeeccccceeeeEEE
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDH--------------TSAAS--PSTANT-DVRIAPQVYKGHRNCVTVKGVN 349 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~i~~v~ 349 (538)
|++.++.................-.++.+. ..+.. .+.|.. ...+..+.+..+. .|.+++
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~---siSsl~ 288 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK---SISSLA 288 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC---cceeEE
Confidence 999998544443311111111111111111 11100 111111 0011111222222 388999
Q ss_pred EecCCCcEEEEeccCCeEEEeeccCcceeEEe-ecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 350 FFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 350 ~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
. |++|+++|.|+.+|.|.|++..+.+++... +.|...|+.+.|+|+.+++++.+.+..+.|..+.-
T Consensus 289 V-S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 V-SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred E-cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 8 999999999999999999999998888665 47899999999999999999999999999988764
No 208
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=3.4e-17 Score=137.68 Aligned_cols=308 Identities=18% Similarity=0.239 Sum_probs=200.9
Q ss_pred eEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCC-EEEEecCCCeEEEEEC
Q 009266 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDW 90 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~ 90 (538)
.|.....++.|.+|++...+. ...+.....++.+++|||+|+ +|.+...+-.|.+|.+
T Consensus 63 ilC~~yk~~~vqvwsl~Qpew---------------------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL 121 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSLVQPEW---------------------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSL 121 (447)
T ss_pred eeeeeeccceEEEEEeeccee---------------------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence 355567888999999985554 355666788999999999995 5556677889999999
Q ss_pred CCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccC-ceeeeeeccccCCCcEEEEEcCCCCcEEEEE
Q 009266 91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (538)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (538)
.+.+.... .-.+..+..++|+| +|++.+.++.--.....++..- ..+....+.-.+-..+.|.|+|+| +.|+
T Consensus 122 ~t~~~~~~--~~pK~~~kg~~f~~--dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~la-- 194 (447)
T KOG4497|consen 122 NTQKGYLL--PHPKTNVKGYAFHP--DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-NWLA-- 194 (447)
T ss_pred ccceeEEe--cccccCceeEEECC--CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-cEEE--
Confidence 88775433 23344678899999 9999998886422222222111 111111233345567889999999 5554
Q ss_pred cCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC-------
Q 009266 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST------- 242 (538)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~------- 242 (538)
+||---.-.+..+. ....+..++|+|. +++|++|+.|+.+|+.+--+-+..+.+
T Consensus 195 -------Vwd~~Leykv~aYe-----------~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~ 255 (447)
T KOG4497|consen 195 -------VWDNVLEYKVYAYE-----------RGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYH 255 (447)
T ss_pred -------Eecchhhheeeeee-----------eccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhcc
Confidence 45432222222222 1125889999997 799999999999988554322111000
Q ss_pred ----------------------CCCC--------------------C--CcccCCCCccCCCccceEEEEEcCCCCEEEE
Q 009266 243 ----------------------DFGQ--------------------P--ADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (538)
Q Consensus 243 ----------------------~~~~--------------------~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 278 (538)
.+.+ | +....+..-.......+.-++|+++..++++
T Consensus 256 dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aT 335 (447)
T KOG4497|consen 256 DPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAAT 335 (447)
T ss_pred CchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEee
Confidence 0000 0 1111222222333456778999999999999
Q ss_pred EcCC---eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC
Q 009266 279 YNDE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (538)
Q Consensus 279 ~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 355 (538)
-.+. .+-+||++..+ ....+. ...+ |....| +|..
T Consensus 336 rnd~~PnalW~Wdlq~l~--------------------------------------l~avLi-Qk~p--iraf~W-dP~~ 373 (447)
T KOG4497|consen 336 RNDKYPNALWLWDLQNLK--------------------------------------LHAVLI-QKHP--IRAFEW-DPGR 373 (447)
T ss_pred ecCCCCceEEEEechhhh--------------------------------------hhhhhh-hccc--eeEEEe-CCCC
Confidence 8865 58999987631 111111 2222 788888 9998
Q ss_pred cEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCce
Q 009266 356 EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI 409 (538)
Q Consensus 356 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v 409 (538)
..|+.+....++++|.......+..- ...-.|..+.|.-.|..++.++.|...
T Consensus 374 prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred ceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCceE
Confidence 88988888889999998665554433 333579999999999999999988543
No 209
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.7e-19 Score=170.30 Aligned_cols=220 Identities=12% Similarity=0.117 Sum_probs=151.2
Q ss_pred cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC-cEEEEe
Q 009266 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-LVQHFD 179 (538)
Q Consensus 101 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd 179 (538)
..|....+|++|+. +.++|+.|+..|.|+++++.++..... ..+|..+|+.+.-+.+|..+|.+++... ...+|+
T Consensus 1098 rd~~~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~s--~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEES--VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hccccceeeEEeec--CCceEEeeeccceEEEEEccCcccccc--ccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 66888999999998 999999999999999999999877665 8899999999999999965555555444 578998
Q ss_pred cCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccC
Q 009266 180 LRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (538)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
+.. +.....|. .-.++.|+.. .+.-+.|+....+.+||+.++....++.. -..
T Consensus 1174 ~~s~~~~~Hsf~--------------ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt-----------~~~ 1227 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD--------------EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLT-----------DTV 1227 (1516)
T ss_pred cccccCcccccc--------------ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcC-----------cch
Confidence 864 23333332 4578889876 45556666667899999999764322111 001
Q ss_pred CCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec
Q 009266 259 DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (538)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
.....-+++.|+|+.+++.--+ .+||++.. ..++.|..
T Consensus 1228 ~~~y~~n~a~FsP~D~LIlndG----vLWDvR~~--------------------------------------~aIh~FD~ 1265 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLILNDG----VLWDVRIP--------------------------------------EAIHRFDQ 1265 (1516)
T ss_pred hhhhhccccccCCCcceEeeCc----eeeeeccH--------------------------------------HHHhhhhh
Confidence 1122337788999988776322 48998762 22333332
Q ss_pred cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEe
Q 009266 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 339 ~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
.... +. -. |+|+|..++.-+. |||+.+.+++...+.-. -..+.|+..|..+...
T Consensus 1266 ft~~--~~-G~-FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1266 FTDY--GG-GG-FHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred heec--cc-cc-ccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccCccchhhh
Confidence 2211 11 22 4999999998885 99999998887655322 3567788877755433
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=7.7e-18 Score=150.52 Aligned_cols=203 Identities=14% Similarity=0.242 Sum_probs=152.2
Q ss_pred eEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 009266 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~ 91 (538)
.++.++.||.+.|-+-. |+. .+...+|.+.|.|-.|+|+|.-|+|++.||.|++|. .
T Consensus 77 ~~~i~s~DGkf~il~k~-~rV---------------------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-r 133 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS-ARV---------------------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-R 133 (737)
T ss_pred eEEEEcCCceEEEeccc-chh---------------------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-c
Confidence 46777778888887655 443 356788999999999999999999999999999999 4
Q ss_pred CCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC
Q 009266 92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (538)
Q Consensus 92 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 171 (538)
+|-...++ .....+|+|++|.| +...++.|.. +.+.|=.+..+..+.. .+.|.+-|.++.|++.+ .++++|+.
T Consensus 134 sGMLRStl-~Q~~~~v~c~~W~p--~S~~vl~c~g-~h~~IKpL~~n~k~i~--WkAHDGiiL~~~W~~~s-~lI~sgGE 206 (737)
T KOG1524|consen 134 SGMLRSTV-VQNEESIRCARWAP--NSNSIVFCQG-GHISIKPLAANSKIIR--WRAHDGLVLSLSWSTQS-NIIASGGE 206 (737)
T ss_pred cchHHHHH-hhcCceeEEEEECC--CCCceEEecC-CeEEEeecccccceeE--EeccCcEEEEeecCccc-cceeecCC
Confidence 56553333 56677999999999 7766665554 4566666655544443 78899999999999998 79999999
Q ss_pred CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCccc
Q 009266 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (538)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 251 (538)
|-..+|||... ..+..-.. +..+|++++|+|+ ..++.++. .++|+ .+
T Consensus 207 D~kfKvWD~~G-~~Lf~S~~----------~ey~ITSva~npd--~~~~v~S~-nt~R~---~~---------------- 253 (737)
T KOG1524|consen 207 DFRFKIWDAQG-ANLFTSAA----------EEYAITSVAFNPE--KDYLLWSY-NTARF---SS---------------- 253 (737)
T ss_pred ceeEEeecccC-cccccCCh----------hccceeeeeeccc--cceeeeee-eeeee---cC----------------
Confidence 99999999654 33322222 5558999999997 56665553 23331 11
Q ss_pred CCCCccCCCccceEEEEEcCCCCEEEEEc-CCeE
Q 009266 252 CPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (538)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (538)
...+.|..++||++|..+++++ .|.+
T Consensus 254 -------p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 254 -------PRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred -------CCccceEEEEEcCCCceeeccccCceE
Confidence 1246799999999999999887 4543
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2e-17 Score=142.36 Aligned_cols=258 Identities=18% Similarity=0.258 Sum_probs=182.2
Q ss_pred CcCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCCceeee-----eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 60 HRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERVKLS-----FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 60 h~~~v~~~~~s~~g--~~l~t~~~d~~i~iw~~~~~~~~~~-----~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
-...|+.++|.-++ ..|...+.+..+..+.+........ .......+|..++.. + ..|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---d-g~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---D-GTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---C-CEEEEEecCCcEEE
Confidence 34678888887654 4566665777788887766554433 224556678777775 3 57888888999999
Q ss_pred eecccCc--eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC--CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 133 AQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 133 wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
|....+. ......+..+ ..+..+.-++..++++++|+.. ..+.|||+.+.+.+..-+..+...+ +..-+.+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L-~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL-GLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc-cceeeeeecc
Confidence 9998543 1111123323 4567777788888888999999 8899999998855544443322111 1113345566
Q ss_pred EEEcCC-CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEe
Q 009266 209 IAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (538)
Q Consensus 209 ~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~ 287 (538)
+.|-|. ..+.||+++.-+.|++||.+.++ .+|.++.|.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qR------------------------RPV~~fd~~----------------- 246 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQR------------------------RPVAQFDFL----------------- 246 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccC------------------------cceeEeccc-----------------
Confidence 666652 03566777777777777766432 233333332
Q ss_pred eccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeE
Q 009266 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (538)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i 367 (538)
..+ +.++.. .|.+++|++|..-|.+
T Consensus 247 ----------------------------------------------------E~~--is~~~l-~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 247 ----------------------------------------------------ENP--ISSTGL-TPSGNFIYTGNTKGQL 271 (412)
T ss_pred ----------------------------------------------------cCc--ceeeee-cCCCcEEEEecccchh
Confidence 222 677777 8999999999999999
Q ss_pred EEeeccCcceeEE-eecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 368 FIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 368 ~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
..||+..++++.. +++-.+.|+++..+|..++||+||.|..|||+++.+.++
T Consensus 272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred heecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 9999999998876 888999999999999999999999999999999998655
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.6e-18 Score=148.59 Aligned_cols=203 Identities=18% Similarity=0.232 Sum_probs=154.0
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee
Q 009266 65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (538)
Q Consensus 65 ~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 144 (538)
.+++|+++|..|++|+.||++|||++.+...+... ..|...|.+|.|+| +|++|++.+.+ ..+||++.++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~--dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSP--DGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCC--CCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999998888777666 78999999999999 99999999999 9999999999776654
Q ss_pred eccccCCCcEEEEEcCCC---CcEEEE-EcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 145 LLGKHQGRAHKLAIEPGS---PHVFYT-CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~---~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
.-......+..+.|+.++ ..++++ ...-+.|+.|++.....-..++..+... ....|.+++.+++ |++++
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-----~~~siSsl~VS~d-Gkf~A 297 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-----RFKSISSLAVSDD-GKFLA 297 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-----ccCcceeEEEcCC-CcEEE
Confidence 434445567777887655 223333 2334567777665433211111111110 1226999999998 89999
Q ss_pred EEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccC
Q 009266 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDM 291 (538)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~ 291 (538)
.|+.+|.|.|++..+.+ +.+.....|...|+.+.|+|+.+++++.+.+ .+.+..+..
T Consensus 298 lGT~dGsVai~~~~~lq--------------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQ--------------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceee--------------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999876 3455566788899999999999999887744 677776654
No 213
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1e-17 Score=149.68 Aligned_cols=208 Identities=16% Similarity=0.244 Sum_probs=159.1
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCc
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v 153 (538)
..|+.++.||.+.|.+ ..++....+ .+|.+.|.+-.|+| +|.-|++++.||.|++|.-. + ....++.....+|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSrs-G--MLRStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSRS-G--MLRSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCC--CCceeeeecCCceEEEEecc-c--hHHHHHhhcCcee
Confidence 5788889999999988 456665555 89999999999999 99999999999999999843 2 2223355677889
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 009266 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 233 (538)
+|++|.|+..+++++.+ +.+.|=.+.....+...+. |.+-|.++.|+|. ..++++|++|-..++||.
T Consensus 149 ~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkA----------HDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRA----------HDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDA 215 (737)
T ss_pred EEEEECCCCCceEEecC--CeEEEeecccccceeEEec----------cCcEEEEeecCcc-ccceeecCCceeEEeecc
Confidence 99999999977777766 4566655554444444443 4557999999998 799999999999999998
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccC
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (538)
.... ......|..+|++++|+|+ +.++.++.+.+++=..+
T Consensus 216 ~G~~----------------Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~----------------------- 255 (737)
T KOG1524|consen 216 QGAN----------------LFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPR----------------------- 255 (737)
T ss_pred cCcc----------------cccCChhccceeeeeeccc-cceeeeeeeeeeecCCC-----------------------
Confidence 6542 2233456889999999999 77776666555522211
Q ss_pred CCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
.+ .|..++| |++|..+++|+..|.+.+=
T Consensus 256 --------------------------~G--SifnlsW-S~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 256 --------------------------VG--SIFNLSW-SADGTQATCGTSTGQLIVA 283 (737)
T ss_pred --------------------------cc--ceEEEEE-cCCCceeeccccCceEEEe
Confidence 12 3899999 9999999999999987653
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.5e-17 Score=145.94 Aligned_cols=327 Identities=17% Similarity=0.199 Sum_probs=220.8
Q ss_pred ceEEeeeccCceeccccch----hhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEE-EEecCCCeEEEEECCCCce
Q 009266 21 LVDVWLRELGQLSTRNFAL----RRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTERV 95 (538)
Q Consensus 21 ~v~iwd~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~t~~~d~~i~iw~~~~~~~ 95 (538)
-|+||++..|+-+....+. ...-..+...++.+++.|. |...-+.|..+|||+|| |||..-..|++|++..-.+
T Consensus 8 dVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL 86 (703)
T KOG2321|consen 8 DVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL 86 (703)
T ss_pred ceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEccccee
Confidence 5889999877765442221 1122222334556666665 78888999999999976 5677788999999986554
Q ss_pred eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcE
Q 009266 96 KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (538)
Q Consensus 96 ~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (538)
...- .--...|.-.-.+- +-..++.-..|.+|.+...-. ..-.+ .+ ...-..++++.-. .-|++++....|
T Consensus 87 KFER-hlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~G-~hy~~-RI---P~~GRDm~y~~~s-cDly~~gsg~ev 157 (703)
T KOG2321|consen 87 KFER-HLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKYG-RHYRT-RI---PKFGRDMKYHKPS-CDLYLVGSGSEV 157 (703)
T ss_pred eeee-cccccceeEEEecc--chhhheEeecCceeeehhhcC-eeeee-ec---CcCCccccccCCC-ccEEEeecCcce
Confidence 3222 11223444444444 555566666777777654321 11111 11 1233456666544 235555666789
Q ss_pred EEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCC
Q 009266 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (538)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
+-+++..|..+..+... ...++++..++- ..+|++|+.+|.|..||.+.....+.+.....+. ..
T Consensus 158 YRlNLEqGrfL~P~~~~----------~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~----s~ 222 (703)
T KOG2321|consen 158 YRLNLEQGRFLNPFETD----------SGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN----SH 222 (703)
T ss_pred EEEEccccccccccccc----------cccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccC----CC
Confidence 99999999988877643 347999999997 5699999999999999999887655544332211 11
Q ss_pred ccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCc
Q 009266 256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (538)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
........|+++.|+.+|-.+++|+ .|.++|||+++.. ..
T Consensus 223 pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~---------------------------------------pl 263 (703)
T KOG2321|consen 223 PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK---------------------------------------PL 263 (703)
T ss_pred ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC---------------------------------------ce
Confidence 1122344699999999999999988 7799999998742 23
Q ss_pred eeeccccceeeeEEEEecCC--CcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 335 VYKGHRNCVTVKGVNFFGPK--CEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 335 ~~~~~~~~~~i~~v~~~s~~--~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
..+.|.....|..+.| -+. +..|++. ....++||+-.+|+....+.. ...++.+++-|++.++++|-.++.+..|
T Consensus 264 ~~kdh~~e~pi~~l~~-~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDW-QDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred eecccCCccceeeecc-cccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeE
Confidence 4455666666888888 454 2344444 356799999999999988874 4459999999999999999888877665
Q ss_pred cC
Q 009266 413 TP 414 (538)
Q Consensus 413 ~~ 414 (538)
=+
T Consensus 341 yi 342 (703)
T KOG2321|consen 341 YI 342 (703)
T ss_pred Ec
Confidence 43
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=1.2e-16 Score=134.03 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=176.6
Q ss_pred CCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc-eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecC
Q 009266 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (538)
Q Consensus 103 ~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 181 (538)
-..+|+|.+|++ +...+|++.....|.||...... ....+++..|...|+.|.|+|.. +.|++|+.|..-++|...
T Consensus 9 ~~~pitchAwn~--drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNS--DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecC--CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccC
Confidence 356899999999 99999999999999999998877 66677899999999999999998 578999999999999984
Q ss_pred -CCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC
Q 009266 182 -TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (538)
Q Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (538)
.++-..++...+ .....+++.|+|. ++.||+|+.-..|.||-+....- -...+++...+
T Consensus 86 ~~~~WkptlvLlR--------iNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENd-----------WWVsKhikkPi 145 (361)
T KOG1523|consen 86 SGGTWKPTLVLLR--------INRAATCVKWSPK-ENKFAVGSGARLISVCYYEQEND-----------WWVSKHIKKPI 145 (361)
T ss_pred CCCeeccceeEEE--------eccceeeEeecCc-CceEEeccCccEEEEEEEecccc-----------eehhhhhCCcc
Confidence 343333333222 3447899999997 89999999999999998875431 00112344456
Q ss_pred ccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecc
Q 009266 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
...|+++.|+|++-+|++|+ +++.++|..--...-......|-... ...+.....+..
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk--------------------~PFG~lm~E~~~- 204 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSK--------------------MPFGQLMSEASS- 204 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccC--------------------CcHHHHHHhhcc-
Confidence 78899999999999999998 77888887532111000000000000 011222223322
Q ss_pred ccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc-eeEEeecCcceeeEEeecCC
Q 009266 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPH 396 (538)
Q Consensus 340 ~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~ 396 (538)
....+..+.| +|.|..|+-.+.|..|.+-|..... .+..+....-+..++.|-..
T Consensus 205 -~ggwvh~v~f-s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 205 -SGGWVHGVLF-SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred -CCCceeeeEe-CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 2234999999 9999999999999999999876654 34443333356677776544
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.77 E-value=6.6e-17 Score=136.79 Aligned_cols=272 Identities=15% Similarity=0.235 Sum_probs=179.9
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCce----eeeeccCCC------------CCeEEEEEeecCCCceEEEE
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHSGHN------------DNVFQAKIMPFTDDRSIVTC 124 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~----~~~~~~~~~------------~~v~~l~~~~~~~~~~l~s~ 124 (538)
..-|.++.|...|.+||||...|.|.+|.-..... ..+....|. ..|..+.|.+..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46799999999999999999999999996432221 122223332 46889999985556678888
Q ss_pred eCCCcEEEeecccCceee------------------e----------------eeccccCCCcEEEEEcCCCCcEEEEEc
Q 009266 125 AADGQVRHAQILERGGVE------------------T----------------KLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 125 ~~dg~v~vwd~~~~~~~~------------------~----------------~~~~~~~~~v~~~~~~~~~~~~l~s~~ 170 (538)
+.+.+|++|.+....... . ..-..|+..|++|.++.+. ..++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec-
Confidence 889999999986432211 0 0113588889999999998 455554
Q ss_pred CCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC--CCCCCCC
Q 009266 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS--TDFGQPA 248 (538)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~ 248 (538)
.|=.|.+|++.-......+.-..+..... -..-|++..|+|...++|+-.+..|+|++-|+|...+-.. ..+..|.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEe--LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHH--HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 56789999987433222211111100000 1225889999998788999999999999999996543111 0111111
Q ss_pred cccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCC
Q 009266 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
.. ..+..+..-...|..+.|+++|+++++-..-+|++||+....
T Consensus 261 dp-~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~----------------------------------- 304 (433)
T KOG1354|consen 261 DP-SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA----------------------------------- 304 (433)
T ss_pred CC-cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC-----------------------------------
Confidence 00 011122222457889999999999999888899999997642
Q ss_pred cccCCceeecccc-------------ceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc
Q 009266 329 VRIAPQVYKGHRN-------------CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 329 ~~~~~~~~~~~~~-------------~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
.++.+++-|.. -..-..++| +-++.++++|+....+++|++..|
T Consensus 305 --~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~-sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 305 --KPVETYPVHEYLRSKLCSLYENDAIFDKFECSW-SGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred --CcceEEeehHhHHHHHHHHhhccchhheeEEEE-cCCcceEecccccceEEEecCCCC
Confidence 22333333321 011346677 888899999999999999996554
No 217
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.1e-15 Score=137.97 Aligned_cols=316 Identities=11% Similarity=0.131 Sum_probs=206.8
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEec--
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS-- 80 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~-- 80 (538)
.++++++|+++|.+. +..|+|++..++..+ +..+. ..+.++.|+|.|.+|.|--
T Consensus 39 v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~--------------------lt~~~---~~~~~L~fSP~g~yL~T~e~~ 94 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSD-NQVVKVFEIATLKVV--------------------LCVEL---KKTYDLLFSPKGNYLLTWEPW 94 (566)
T ss_pred eEEEcCCCcEEEEEc-CCeEEEEEccCCcEE--------------------EEecc---ceeeeeeeccccccccccccc
Confidence 456788887777665 668999999877533 12222 2689999999999998631
Q ss_pred --------CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 81 --------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 81 --------~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
....+++|++.++.....+....... +++.|++ +.. |+.--..+.|.+|++...+.+.. .-|...
T Consensus 95 ~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~--dEs-l~arlv~nev~f~~~~~f~~~~~---kl~~~~ 167 (566)
T KOG2315|consen 95 AIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSI--DES-LAARLVSNEVQFYDLGSFKTIQH---KLSVSG 167 (566)
T ss_pred ccccCCCCCCCceeeeeeccceehhheehhhhcC-ccccccc--chh-hhhhhhcceEEEEecCCccceee---eeeccc
Confidence 12458899999966555553333333 6889997 554 44334457899999887444332 236778
Q ss_pred cEEEEEcCCC-CcEEEE-----EcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC--
Q 009266 153 AHKLAIEPGS-PHVFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-- 224 (538)
Q Consensus 153 v~~~~~~~~~-~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 224 (538)
|+.+.++|.. +..+++ .+.-+.|+||........+.+..... ....-..+.|++-+..+|+.++.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-------Fkadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-------FKADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-------cccceeEEEeccCCceEEEEEEEee
Confidence 9999999973 334443 34556799998763333222221111 11123457788765455554442
Q ss_pred ---------CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC---CeEEEeeccCC
Q 009266 225 ---------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---EFIYLFTQDMG 292 (538)
Q Consensus 225 ---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---~~i~~~d~~~~ 292 (538)
..+++++.+..... .......++|.++.|+|+|+-++++.. -++.||+++..
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~----------------~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESV----------------SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred cCCCccccccceEEEEEecCceE----------------EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 23677777763221 111123679999999999987666542 37999998742
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC---CeEEE
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFI 369 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d---g~i~i 369 (538)
.+..+. .++ -+++-| +|.|++|+.++-+ |.|-|
T Consensus 305 ---------------------------------------~v~df~--egp--RN~~~f-np~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 305 ---------------------------------------PVFDFP--EGP--RNTAFF-NPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred ---------------------------------------EeEeCC--CCC--ccceEE-CCCCCEEEEeecCCCCCceEE
Confidence 222222 221 345555 9999999877654 88999
Q ss_pred eeccCcceeEEeecCcceeeEEeecCCCCeEEEeec------CCceEEecCCCCc
Q 009266 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAAD 418 (538)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~v~vw~~~~~~ 418 (538)
||+.+.+++..+.+.. -+-+.|+|+|++|+|+.. |+.++||+..+..
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 9999999998887654 466899999999988865 6889999987653
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.4e-16 Score=131.81 Aligned_cols=305 Identities=11% Similarity=0.071 Sum_probs=191.3
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 140 (538)
.-.+..++|++--..+|++..|-.|++|+-.. .+...+.......|++++|-|. .+.-|+.|+. +-|++|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl-saselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL-SASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC-Ccceeeeeec-ceeEEEEcCcccc
Confidence 45688899999767788999999999999766 5545554556678999999994 3456666665 5589998643211
Q ss_pred ------------eeeeeccccCCCcEEEEEcCCCCcEEEEEcC-CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 141 ------------VETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 141 ------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
.....-.+| .+|++|.|.++| ..+++++. +..|+||++.++..+..... ..+.+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~----------glgg~s 242 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPK----------GLGGFS 242 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccccc----------CCCcee
Confidence 111112344 689999999999 56777665 56799999999987765521 233688
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEe
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~ 287 (538)
-+.|+|+ +.+|++++-|+..++|........ .+... ..+.|...+|+|.|++|..+..+.-++|
T Consensus 243 lLkwSPd-gd~lfaAt~davfrlw~e~q~wt~-------------erw~l--gsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 243 LLKWSPD-GDVLFAATCDAVFRLWQENQSWTK-------------ERWIL--GSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred eEEEcCC-CCEEEEecccceeeeehhccccee-------------cceec--cCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 9999998 789999999999999965443211 11111 2348999999999999988888877777
Q ss_pred eccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccc-cceeeeEEEEecCCCcEEEEeccCC-
Q 009266 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-NCVTVKGVNFFGPKCEYVVSGSDCG- 365 (538)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~s~~~~~l~~gs~dg- 365 (538)
.+........+............ . .........+.. -...+.+++| .|.|.|||+.-..+
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lli-------------a----DL~e~ti~ag~~l~cgeaq~law-DpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLI-------------A----DLQEVTICAGQRLCCGEAQCLAW-DPSGEYLAVIFKGQS 368 (445)
T ss_pred EEeecCCCccccCcccceeeeee-------------c----cchhhhhhcCcccccCccceeeE-CCCCCEEEEEEcCCc
Confidence 76543322221110000000000 0 001111111110 0123778999 99999999865433
Q ss_pred -------eEEEeeccCcceeEEee-c--CcceeeEEeecC---CCCeEEEeecCCceEEecC
Q 009266 366 -------RIFIWKKKGGELIRVIE-A--DRHVVNCIEPHP---HSTVLASSGIESDIKILTP 414 (538)
Q Consensus 366 -------~i~iwd~~~~~~~~~~~-~--h~~~v~~~~~s~---~~~~l~s~~~dg~v~vw~~ 414 (538)
.|.+|+....-.+.-.. + .......++|+| ++++|..+=..|.+.-|.+
T Consensus 369 ~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 369 FVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 35677765443332221 1 112245566665 3556666655666665554
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=3.5e-15 Score=125.30 Aligned_cols=276 Identities=12% Similarity=0.139 Sum_probs=178.3
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCC--CCeEEEEEeecCCCceEEE-EeCC------CcEEEee
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVT-CAAD------GQVRHAQ 134 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~l~s-~~~d------g~v~vwd 134 (538)
..+++|+.|...++.|..+| .+||+..--+...+. ..+. -.+..|-|- .++|+- |+.. ..|.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLfR----~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLFR----SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhhh----hceEEEecCCCCCCCCCceEEEEe
Confidence 44599999999999998876 899998653321111 1112 233333342 345543 3332 5799999
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecC-CCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
=...+++.... ...+|.++.+.++. |++.- .+.|+||... ..+.+..+.... .+..+.+++-+.
T Consensus 82 D~k~~~i~el~---f~~~I~~V~l~r~r---iVvvl-~~~I~VytF~~n~k~l~~~et~~--------NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 82 DLKERCIIELS---FNSEIKAVKLRRDR---IVVVL-ENKIYVYTFPDNPKLLHVIETRS--------NPKGLCSLCPTS 146 (346)
T ss_pred cccCcEEEEEE---eccceeeEEEcCCe---EEEEe-cCeEEEEEcCCChhheeeeeccc--------CCCceEeecCCC
Confidence 55555555432 56789999999854 44443 4789999987 445555444322 111344444333
Q ss_pred CCCcEEEE-EeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CC-eEEEeecc
Q 009266 214 RNANLFAV-AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQD 290 (538)
Q Consensus 214 ~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~-~i~~~d~~ 290 (538)
. ..+||. |-.-|.|+|-++...+. .+...+..|...|.|++++.+|.+||+++ .| -|+|||..
T Consensus 147 ~-k~~LafPg~k~GqvQi~dL~~~~~-------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 147 N-KSLLAFPGFKTGQVQIVDLASTKP-------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred C-ceEEEcCCCccceEEEEEhhhcCc-------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 2 344444 44669999999987652 13466778899999999999999999999 55 49999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
++. .++.++.-.....|.+++| ||+..+||++|..|+|+||
T Consensus 213 ~g~--------------------------------------~l~E~RRG~d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 213 DGT--------------------------------------LLQELRRGVDRADIYCIAF-SPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred CCc--------------------------------------EeeeeecCCchheEEEEEe-CCCccEEEEEcCCCeEEEE
Confidence 853 4444544444445999999 9999999999999999999
Q ss_pred eccCcceeE------------------------EeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 371 KKKGGELIR------------------------VIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 371 d~~~~~~~~------------------------~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
.+.....-. .++-..+....++|..+.+.++..+.||..+-+.
T Consensus 254 ~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 254 SLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 986432111 1122233445556665555555566666655443
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=8.9e-18 Score=147.54 Aligned_cols=225 Identities=15% Similarity=0.214 Sum_probs=182.5
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
|..+|++|+.|++.|.|-.+|+.++++.. .+. -...|..+.|..+.+++|.+-. ..+
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---------------------Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~ 193 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHF---------------------EIN-VMETVRDVTFLHNEQFFAVAQK-KYV 193 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeee---------------------eee-hhhhhhhhhhhcchHHHHhhhh-ceE
Confidence 55789999999999999999999988752 222 3467889999999999988765 689
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcE
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
.||| ..|..++++ ..| ..|..+.|.| ..-+|++++..|.++.-|+.+++.+.. +....+.+..++-+|-+ .+
T Consensus 194 yvYD-~~GtElHCl-k~~-~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~--~~t~~G~~~vm~qNP~N-aV 265 (545)
T KOG1272|consen 194 YVYD-NNGTELHCL-KRH-IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVAS--IRTGAGRTDVMKQNPYN-AV 265 (545)
T ss_pred EEec-CCCcEEeeh-hhc-Cchhhhcccc--hhheeeecccCCceEEEeechhhhhHH--HHccCCccchhhcCCcc-ce
Confidence 9999 457777777 333 5799999999 888899999999999999999988876 66677888999999988 68
Q ss_pred EEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
+-+|...|+|.+|.....+++..+.+| .++|.+|++.+. |++++|++.|..|+|||++......
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLcH----------~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~----- 329 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILCH----------RGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLH----- 329 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHhc----------CCCcceEEECCC-CcEEeecccccceeEeeeccccccc-----
Confidence 889999999999999999888877774 448999999997 8999999999999999999865221
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeec
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~ 289 (538)
.... ..+...++||..| +||.+....+.||.=
T Consensus 330 ---------t~~t--p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 330 ---------TYRT--PHPASNLSLSQKG-LLALSYGDHVQIWKD 361 (545)
T ss_pred ---------eeec--CCCcccccccccc-ceeeecCCeeeeehh
Confidence 1111 2356677887665 556666678999963
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=1.3e-17 Score=146.55 Aligned_cols=273 Identities=15% Similarity=0.190 Sum_probs=200.0
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 141 (538)
-.-..+.++.+|++|+.|+..|.|..+|+.++++...+ .-...|..+.|.. +.+++|++-. ..+.|||-. + .
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LH--neq~~AVAQK-~y~yvYD~~-G--t 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLH--NEQFFAVAQK-KYVYVYDNN-G--T 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhc--chHHHHhhhh-ceEEEecCC-C--c
Confidence 34567889999999999999999999999999987776 3456799999987 7777777664 678999843 3 2
Q ss_pred eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
..+.+..| ..|..+.|.|.. .+|++++..|.++.-|+.+|+.+..+... .+.+..++-+|- ...+-+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~----------~G~~~vm~qNP~-NaVih~ 268 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTG----------AGRTDVMKQNPY-NAVIHL 268 (545)
T ss_pred EEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHcc----------CCccchhhcCCc-cceEEE
Confidence 33445544 568899999988 89999999999999999999998877643 336788899997 468899
Q ss_pred EeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCC
Q 009266 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPS 300 (538)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~ 300 (538)
|...|+|.+|...... +...+..|.++|.++++.++|+++|+++ +..++|||+++..
T Consensus 269 GhsnGtVSlWSP~ske---------------PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~------- 326 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKE---------------PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY------- 326 (545)
T ss_pred cCCCceEEecCCCCcc---------------hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-------
Confidence 9999999999988764 2333445789999999999999999988 6689999998732
Q ss_pred CCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc-C--cce
Q 009266 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-G--GEL 377 (538)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~-~--~~~ 377 (538)
.+.++.. +.....+++ |..| +++.+....|.||.=. . +..
T Consensus 327 -------------------------------ql~t~~t---p~~a~~ls~-Sqkg--lLA~~~G~~v~iw~d~~~~s~~~ 369 (545)
T KOG1272|consen 327 -------------------------------QLHTYRT---PHPASNLSL-SQKG--LLALSYGDHVQIWKDALKGSGHG 369 (545)
T ss_pred -------------------------------ccceeec---CCCcccccc-cccc--ceeeecCCeeeeehhhhcCCCCC
Confidence 2333332 112556776 6555 3334445678999632 2 122
Q ss_pred eEEeecC--cceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 378 IRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 378 ~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
-..+-.| .++|..+.|.|-...|-.|-.-|.-.+.=+
T Consensus 370 ~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVP 408 (545)
T KOG1272|consen 370 ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVP 408 (545)
T ss_pred CcchhhhccCcccccceeccHHHeeeccccCCceeEecc
Confidence 2222223 258999999997666666655544444333
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.3e-16 Score=151.09 Aligned_cols=211 Identities=10% Similarity=0.080 Sum_probs=139.5
Q ss_pred CCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC---CeEEEEECCCCce
Q 009266 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKTERV 95 (538)
Q Consensus 19 d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d---~~i~iw~~~~~~~ 95 (538)
+..|+|||..... . +.+..|...+.+.+|+|+|++|+.++.+ ..|++|++.+++.
T Consensus 183 ~~~i~i~d~dg~~-~---------------------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~ 240 (429)
T PRK01742 183 PYEVRVADYDGFN-Q---------------------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR 240 (429)
T ss_pred eEEEEEECCCCCC-c---------------------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce
Confidence 4689999987332 2 3466788899999999999999987653 4799999988764
Q ss_pred eeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEe--ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC
Q 009266 96 KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHA--QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (538)
Q Consensus 96 ~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vw--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 172 (538)
... ....+....++|+| +|++|+.++ .+|.+.|| ++.++... .+..+...+....|+|++..+++++..+
T Consensus 241 ~~l--~~~~g~~~~~~wSP--DG~~La~~~~~~g~~~Iy~~d~~~~~~~---~lt~~~~~~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 241 KVV--ASFRGHNGAPAFSP--DGSRLAFASSKDGVLNIYVMGANGGTPS---QLTSGAGNNTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred EEE--ecCCCccCceeECC--CCCEEEEEEecCCcEEEEEEECCCCCeE---eeccCCCCcCCEEECCCCCEEEEEECCC
Confidence 221 11222344689999 999888765 67876666 55444332 2555667788999999996555566677
Q ss_pred CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccC
Q 009266 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (538)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 252 (538)
+..+||.+........... +. . .++.|+|+ +++|+.++.++ +.+||+.+++....
T Consensus 314 g~~~I~~~~~~~~~~~~l~----------~~-~-~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~l----------- 368 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVG----------GR-G-YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVL----------- 368 (429)
T ss_pred CCceEEEEECCCCCeEEec----------CC-C-CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEe-----------
Confidence 8888887754322111111 11 1 34689998 67777776655 55699887652110
Q ss_pred CCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeec
Q 009266 253 PPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (538)
Q Consensus 253 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (538)
... ....++.|+|+|++|+.++ ++.+.+|.+
T Consensus 369 ----t~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 369 ----SST--FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ----cCC--CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 000 1124578999999998877 556666664
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=1.7e-15 Score=135.79 Aligned_cols=252 Identities=15% Similarity=0.161 Sum_probs=166.5
Q ss_pred CCceEEEEeCCCcEEEeecccCce----eeeeeccccCCCcEEEEE-----cCCCCcEEEEEcCCCcEEEEecCCCCeee
Q 009266 117 DDRSIVTCAADGQVRHAQILERGG----VETKLLGKHQGRAHKLAI-----EPGSPHVFYTCGEDGLVQHFDLRTGAATE 187 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~----~~~~~~~~~~~~v~~~~~-----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 187 (538)
.|.+|+-.-. ..+.+|..+.+.. +....+.+ ....|-.| .|.+ .-|+.|-.-|.|.+.+....+..+
T Consensus 134 ~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp~~~~~sk 209 (636)
T KOG2394|consen 134 KGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDPINFEVSK 209 (636)
T ss_pred CCCEEEEecC-CeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCC-cceEEeeccCceEEecchhhHHHH
Confidence 5555554332 4577887763322 22221221 12223333 2444 456778888999999887744333
Q ss_pred eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCC---C----------CcccCCC
Q 009266 188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ---P----------ADYFCPP 254 (538)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~----------~~~~~~~ 254 (538)
.+... .+.....|+|+.|-|-+..+|+++..+|.+++|+....--.....+.. + .....|.
T Consensus 210 lfne~------r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 210 LFNEE------RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhhhc------ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 33221 122445899999999877899999999999999873221110000000 0 0000111
Q ss_pred CccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCC
Q 009266 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (538)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
....-....|..++|+|+|++||+.+ ++.++||+..+. ..+
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------------------------------------eLl 325 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------------------------------------ELL 325 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH--------------------------------------HHH
Confidence 11111245789999999999999998 679999998763 233
Q ss_pred ceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCC-----------------
Q 009266 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH----------------- 396 (538)
Q Consensus 334 ~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~----------------- 396 (538)
..++..-+. ..+|+| ||||+||++|+.|-.|.||.+..++.+..-++|+..|..++|.|-
T Consensus 326 g~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~ 402 (636)
T KOG2394|consen 326 GVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTF 402 (636)
T ss_pred HHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccc
Confidence 333333333 899999 999999999999999999999999999999999999999999730
Q ss_pred ------------------C-------------CeEEEeecCCceEEecCCCCcc
Q 009266 397 ------------------S-------------TVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 397 ------------------~-------------~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+ -.|.+.+.|..+.+||+....+
T Consensus 403 ~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 403 SDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 1 2477889999999999976433
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=8e-15 Score=123.17 Aligned_cols=240 Identities=14% Similarity=0.157 Sum_probs=161.7
Q ss_pred CeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC------CcEEEEe
Q 009266 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFD 179 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd 179 (538)
...+++|+. +...+++|...| .+||+..--+......+....-.+..+-|-.+ .+.++|+.. ..|.|||
T Consensus 7 ~~lsvs~NQ--D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N--~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQ--DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSN--YLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEcc--CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhc--eEEEecCCCCCCCCCceEEEEe
Confidence 345589998 888888777655 89999865333222111111122223333221 344445443 4699999
Q ss_pred cCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ccccCCCCCCCCCcccCCCCccC
Q 009266 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIG 258 (538)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
=...+++..+.. ..+|.++.+.++ +++++ ..+.|.+|.... .++... .....
T Consensus 82 D~k~~~i~el~f-----------~~~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~------------~et~~ 134 (346)
T KOG2111|consen 82 DLKERCIIELSF-----------NSEIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHV------------IETRS 134 (346)
T ss_pred cccCcEEEEEEe-----------ccceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheee------------eeccc
Confidence 777777777763 347999999985 34333 357899999884 332111 11111
Q ss_pred CCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCcee
Q 009266 259 DEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (538)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
......+++-+.+..+||.-+ -|.|+|-++.... ......+
T Consensus 135 -NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~------------------------------------~~~p~~I 177 (346)
T KOG2111|consen 135 -NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK------------------------------------PNAPSII 177 (346)
T ss_pred -CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC------------------------------------cCCceEE
Confidence 122233333333455666655 4689999987632 1135778
Q ss_pred eccccceeeeEEEEecCCCcEEEEeccCCe-EEEeeccCcceeEEeecC--cceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 337 ~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~-i~iwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
..|... |.+++. +.+|.+||++|..|+ |||||..+|+++..++-. ...|.+|+|||++.+||++|.-|+|.||.
T Consensus 178 ~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 178 NAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 899987 889998 999999999999997 799999999999998732 35799999999999999999999999999
Q ss_pred CCCC
Q 009266 414 PNAA 417 (538)
Q Consensus 414 ~~~~ 417 (538)
+...
T Consensus 255 l~~~ 258 (346)
T KOG2111|consen 255 LRDT 258 (346)
T ss_pred eecC
Confidence 8753
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.3e-15 Score=126.26 Aligned_cols=234 Identities=14% Similarity=0.102 Sum_probs=150.9
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEc-CCcCcEEEEEEcCC-CCEEEEecCCCeE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTD-GDILISGSDDRRV 85 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~-g~~l~t~~~d~~i 85 (538)
+.-..+|++..|-+|+||+-.. +.. ..++ .-...|+|++|-|. +.-|+.|+..| |
T Consensus 108 qH~~~fava~nddvVriy~kss-t~p---------------------t~Lks~sQrnvtclawRPlsaselavgCr~g-I 164 (445)
T KOG2139|consen 108 QHIIAFAVATNDDVVRIYDKSS-TCP---------------------TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-I 164 (445)
T ss_pred hhhhhhhhhccCcEEEEeccCC-CCC---------------------ceecchhhcceeEEEeccCCcceeeeeecce-e
Confidence 3444567778888999998774 322 1222 23567999999995 56788888754 9
Q ss_pred EEEECCCCcee-----------eee--ccCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCceeeeeeccccCC
Q 009266 86 ILWDWKTERVK-----------LSF--HSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQG 151 (538)
Q Consensus 86 ~iw~~~~~~~~-----------~~~--~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~ 151 (538)
.||.....-.. ..+ ..+| .+|++|+|.+ +|..+++++. +..|+||+..++..++.. ....+
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~~glg 239 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTGQKIPLI--PKGLG 239 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeecccCcceEEEEcCCCCCccccc--ccCCC
Confidence 99986421110 011 1344 6899999999 9999999885 678999999998887753 34456
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 231 (538)
.++-+.|+|++ .+|+++.-|+..++|+............ ..+.|...+|+|.|..+|++.+..- ++|
T Consensus 240 g~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~l----------gsgrvqtacWspcGsfLLf~~sgsp--~ly 306 (445)
T KOG2139|consen 240 GFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWIL----------GSGRVQTACWSPCGSFLLFACSGSP--RLY 306 (445)
T ss_pred ceeeEEEcCCC-CEEEEecccceeeeehhcccceecceec----------cCCceeeeeecCCCCEEEEEEcCCc--eEE
Confidence 78899999999 6888999999999996544322222211 2337999999999666666665444 455
Q ss_pred EcCCccccCCCCCCC------CCcccCCCCc---cCCCccceEEEEEcCCCCEEEEEcCC
Q 009266 232 DIRKYKWDGSTDFGQ------PADYFCPPNL---IGDEQVGITGLAFSDQSELLVSYNDE 282 (538)
Q Consensus 232 d~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (538)
.+.-........-.. ++.-.....+ ..--.+.+.+++|.|.|.+||+.-.+
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 544322111111000 0000000000 01113578999999999999987644
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.4e-16 Score=139.32 Aligned_cols=243 Identities=17% Similarity=0.232 Sum_probs=159.4
Q ss_pred ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEE
Q 009266 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHF 178 (538)
Q Consensus 100 ~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iw 178 (538)
+.+|.+.|+++.|+. +|.+|++|+.|-.+.|||.-..+.+. ..-.+|...|.++.|-|.. ..++++|..|..|+++
T Consensus 46 L~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kllh-sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLLH-SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hccccceecceeecC--CCCEEeecCCcceEEeecchhcceee-eeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 489999999999999 99999999999999999998655544 3457899999999999853 3688999999999999
Q ss_pred ecCCCC----------eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCC
Q 009266 179 DLRTGA----------ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (538)
Q Consensus 179 d~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (538)
|+...+ ....+.+ |...|..|+-.|.+.+.|.++++||+|+-||++....-...
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~c----------ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~------ 186 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSC----------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD------ 186 (758)
T ss_pred ecccccccccccCccchhhhhhh----------hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc------
Confidence 998522 1222233 44478899999987799999999999999999975321110
Q ss_pred cccCCCCcc--CCCccceEEEEEcCCC-CEEEEEcCC-eEEEeeccCCCCCCCCC----CCCccccccccccCCCCcccc
Q 009266 249 DYFCPPNLI--GDEQVGITGLAFSDQS-ELLVSYNDE-FIYLFTQDMGLGPNPPP----SSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 249 ~~~~~~~~~--~~~~~~i~~~~~s~~~-~~l~~~~~~-~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 320 (538)
.-++..+. ....-...++.++|.. .+|++|+.+ ..++||.+...+...-. ..|.........++|++.
T Consensus 187 -~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl--- 262 (758)
T KOG1310|consen 187 -EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL--- 262 (758)
T ss_pred -ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---
Confidence 00111111 1112456889999965 567777766 79999975432221111 001000001111222221
Q ss_pred CCCCCCCCcccCCceeec-cccc-eeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeE
Q 009266 321 SPSTANTDVRIAPQVYKG-HRNC-VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~-~~~~-~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~ 379 (538)
+...+ .... ..++-+.| +|+|.-|++.-..-.|+++++..++...
T Consensus 263 -------------kn~~gn~~~~~~~~t~vtf-npNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 263 -------------KNSQGNLDRYITCCTYVTF-NPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred -------------cCcccccccceeeeEEEEE-CCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 01111 0000 01556677 9999876665555689999998776553
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.5e-15 Score=145.76 Aligned_cols=234 Identities=10% Similarity=0.036 Sum_probs=151.5
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC---CCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
..|.+||.... ....+ ..+...+.+.+|+| +|+.|+.++. ...|.+|++.++..... ..+.....+++|+
T Consensus 184 ~~l~i~D~~g~-~~~~l-t~~~~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGY-NPQTI-LRSAEPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCC-CceEe-ecCCCccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceEC
Confidence 46899998644 33444 45677899999999 9999998774 34699999987765432 2334445678999
Q ss_pred CCCCcEEEEEcCCC--cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCCe--EEEEEcC
Q 009266 160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEY--TRLYDIR 234 (538)
Q Consensus 160 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--v~iwd~~ 234 (538)
|++.+++++.+.++ .|++|++.+++...... +.......+|+|+ ++.|+.++ ..|. |+++++.
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-----------~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-----------HFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-----------CCCCccceEECCC-CCEEEEEECCCCCceEEEEECC
Confidence 99966666666655 59999998876543221 1112456899998 56555544 4554 5566665
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C-C--eEEEeeccCCCCCCCCCCCCcccccccc
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-E--FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (538)
+++... .. . .......++|+|+|++|+..+ . + .|++|++.++..
T Consensus 325 ~g~~~~-------------lt-~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---------------- 372 (433)
T PRK04922 325 GGSAER-------------LT-F--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---------------- 372 (433)
T ss_pred CCCeEE-------------ee-c--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe----------------
Confidence 543210 00 1 112344689999999988764 2 2 589999876421
Q ss_pred ccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC---CeEEEeeccCcceeEEeecCcce
Q 009266 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHV 387 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d---g~i~iwd~~~~~~~~~~~~h~~~ 387 (538)
..+.... . .....| +|+|++|+..+.. +.|+++++ ++.....+..+.+.
T Consensus 373 -----------------------~~Lt~~~-~--~~~p~~-spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~~~g~ 424 (433)
T PRK04922 373 -----------------------RTLTPGS-L--DESPSF-APNGSMVLYATREGGRGVLAAVST-DGRVRQRLVSADGE 424 (433)
T ss_pred -----------------------EECCCCC-C--CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEEcccCCCC
Confidence 1111111 1 234567 9999988876653 46888887 45556666666677
Q ss_pred eeEEeecC
Q 009266 388 VNCIEPHP 395 (538)
Q Consensus 388 v~~~~~s~ 395 (538)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 88888887
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=7.7e-15 Score=140.18 Aligned_cols=235 Identities=12% Similarity=0.099 Sum_probs=153.8
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC---CCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
..|.+||...... ..+ ..+...+...+|+| +|+.|+..+. ...|.+|++.+++......+ ...+..++|+
T Consensus 179 ~~l~~~d~dg~~~-~~l-t~~~~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~~~~~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQVASF---PRHNGAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCC-EEe-ecCCCceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---CCCcCCeEEC
Confidence 4789999875543 334 34667899999999 9999987642 45799999987765443223 3335578999
Q ss_pred CCCCcEEEEEcCCC--cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCCeEEEE--EcC
Q 009266 160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLY--DIR 234 (538)
Q Consensus 160 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iw--d~~ 234 (538)
|+|..++++...+| .|++|++.+++...... ....+....|+|+ ++.|+..+ ..+...|| ++.
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-----------~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-----------CCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECC
Confidence 99965555555555 48899998876544322 1124678899998 56555544 44554555 554
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C-C--eEEEeeccCCCCCCCCCCCCcccccccc
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-E--FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (538)
+++.. .+ ...........|+|+|++|+..+ . + .|++|++.++.
T Consensus 320 ~g~~~---------------~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------------- 366 (429)
T PRK03629 320 GGAPQ---------------RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------------- 366 (429)
T ss_pred CCCeE---------------Ee-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-----------------
Confidence 43211 00 11122345688999999987765 2 2 58888887642
Q ss_pred ccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCe---EEEeeccCcceeEEeecCcce
Q 009266 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR---IFIWKKKGGELIRVIEADRHV 387 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~---i~iwd~~~~~~~~~~~~h~~~ 387 (538)
...+.... ......| +|+|++|+.++.++. ++++++ +|+....+.+|.+.
T Consensus 367 ----------------------~~~Lt~~~---~~~~p~~-SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~ 419 (429)
T PRK03629 367 ----------------------VQVLTDTF---LDETPSI-APNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ 419 (429)
T ss_pred ----------------------eEEeCCCC---CCCCceE-CCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC
Confidence 11122111 1234566 999999998887754 677777 57777788888888
Q ss_pred eeEEeecCC
Q 009266 388 VNCIEPHPH 396 (538)
Q Consensus 388 v~~~~~s~~ 396 (538)
+...+|+|-
T Consensus 420 ~~~p~Wsp~ 428 (429)
T PRK03629 420 VKFPAWSPY 428 (429)
T ss_pred cCCcccCCC
Confidence 999999983
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.69 E-value=2.9e-15 Score=127.06 Aligned_cols=252 Identities=15% Similarity=0.173 Sum_probs=182.0
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE-CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCc
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD-WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~ 129 (538)
..+++.++||...|+....-|-..-+++.+.|.++|||- ...++.-..+...-..+++++.+.+ ....|+++-..|+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecce
Confidence 345678899999999999999888899999999999994 4556655555445567899999999 8999999999999
Q ss_pred EEEeecccC--ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 130 VRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 130 v~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
+.-+.+... +....+....|..+|..+.|+... .++++.+.|..+.---.+.+..+..+.... ...
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-----------~~t 159 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFET-----------PAS 159 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeec-----------cCC
Confidence 998876532 222233466799999999998766 688899998877665566665544333111 112
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEE
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYL 286 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~ 286 (538)
++.+.- . +...|...|.|.+-.+....+ .+.....+|...+.+++|.|..++|.++..+ .+.+
T Consensus 160 ~~~~d~--~-~~fvGd~~gqvt~lr~~~~~~-------------~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~ 223 (404)
T KOG1409|consen 160 ALQFDA--L-YAFVGDHSGQITMLKLEQNGC-------------QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIM 223 (404)
T ss_pred CCceee--E-EEEecccccceEEEEEeecCC-------------ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEE
Confidence 222221 1 445555666666555543321 2344556788999999999999999988855 8999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCe
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~ 366 (538)
|++-.. ......+.+|... |..+++ -+--+.|++++.||.
T Consensus 224 wdigg~-------------------------------------~g~~~el~gh~~k--V~~l~~-~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 224 WDIGGR-------------------------------------KGTAYELQGHNDK--VQALSY-AQHTRQLISCGEDGG 263 (404)
T ss_pred EeccCC-------------------------------------cceeeeeccchhh--hhhhhh-hhhheeeeeccCCCe
Confidence 998753 2334566777776 777777 677789999999999
Q ss_pred EEEeec
Q 009266 367 IFIWKK 372 (538)
Q Consensus 367 i~iwd~ 372 (538)
|.+|++
T Consensus 264 i~~w~m 269 (404)
T KOG1409|consen 264 IVVWNM 269 (404)
T ss_pred EEEEec
Confidence 999997
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=2.7e-15 Score=134.56 Aligned_cols=200 Identities=13% Similarity=0.130 Sum_probs=138.5
Q ss_pred CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC--CEEEEEcCCeEEEeeccCCC
Q 009266 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGL 293 (538)
Q Consensus 216 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~i~~~d~~~~~ 293 (538)
+.-++.|-.-|.|.+++....+..+.+... ....+..++++.|-|.+ .+|++-..+.+++|+.....
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~-----------r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~ 253 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEE-----------RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC 253 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhc-----------ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc
Confidence 567888888999999998774432211111 11124689999999954 56666678999999873211
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
. .........+.+..+++........+.++..+.--.. .|...+| +|+|++||+.+.||.+|||+..
T Consensus 254 ~----------~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fd 320 (636)
T KOG2394|consen 254 G----------ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFD 320 (636)
T ss_pred c----------CCCCcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeecc
Confidence 1 1111111122222222222222222234444443333 3899998 9999999999999999999999
Q ss_pred CcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc-cccCccceeeeecccCceee
Q 009266 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVLIPDHIRWFA 439 (538)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 439 (538)
+.+++..++..-+...|++|||||+||++|+.|-.|.||.+..++. ..=.+|...|..++++-+..
T Consensus 321 t~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt 387 (636)
T KOG2394|consen 321 TQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTT 387 (636)
T ss_pred HHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccc
Confidence 9999988887778999999999999999999999999999988776 44577888888777665433
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=2.7e-14 Score=131.98 Aligned_cols=292 Identities=13% Similarity=0.088 Sum_probs=172.7
Q ss_pred EEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEE
Q 009266 76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (538)
Q Consensus 76 l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~ 155 (538)
+++-..++.|.+.|..+.+.+.++..++ ..-..+.|+| +|+++++++.+|.|.++|+.+.+.+.. +.. ......
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~--i~~-G~~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVAT--IKV-GGNPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEE--EE--SSEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEE--Eec-CCCcce
Confidence 3455668999999999999988884333 3344577899 999999999999999999999987765 332 234678
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
++++++|+.++++....+.+.++|.++.+.++.+......... ....+.++..+|....++++--.-+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999655556667899999999999998887654321110 2235778888886433555555568888888766
Q ss_pred ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccC
Q 009266 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (538)
.+.. ...............|+|++++++++. .+.|.++|..+++....+..
T Consensus 160 ~~~~--------------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~------------- 212 (369)
T PF02239_consen 160 PKNL--------------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT------------- 212 (369)
T ss_dssp SSCE--------------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------------
T ss_pred cccc--------------ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec-------------
Confidence 4311 000111234567889999999877765 55899999876432111000
Q ss_pred CCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEee
Q 009266 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (538)
.... ......-..|.....++... ..+.+.++.-....+.+|+..+.+.++++....++ ..+..
T Consensus 213 -----------g~~p-~~~~~~~~php~~g~vw~~~---~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 213 -----------GKKP-HPGPGANFPHPGFGPVWATS---GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp -----------SSSB-EETTEEEEEETTTEEEEEEE---BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred -----------cccc-cccccccccCCCcceEEeec---cccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 0000 00000001233222233322 22333333333345668999999999999987666 88889
Q ss_pred cCCCCeEEEe----ecCCceEEecCCCCcc
Q 009266 394 HPHSTVLASS----GIESDIKILTPNAADR 419 (538)
Q Consensus 394 s~~~~~l~s~----~~dg~v~vw~~~~~~~ 419 (538)
+|++++|.+. .....|.|+|..+.+.
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 9999999888 4458999999998754
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.67 E-value=1.8e-12 Score=120.40 Aligned_cols=305 Identities=14% Similarity=0.149 Sum_probs=182.1
Q ss_pred EEeeccC----CceEEeee--ccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC----C
Q 009266 13 ARTSVDK----ALVDVWLR--ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----D 82 (538)
Q Consensus 13 l~t~~~d----~~v~iwd~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~----d 82 (538)
++.|+.. +.|.+|.+ .+|++. .+.... -......|+++|++++|.+... .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~-------------------~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~ 61 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLT-------------------LVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDS 61 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEE-------------------EEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCce-------------------Eeeeec-CCCCCceEEEEeCCCEEEEEEccccCC
Confidence 4455555 78999998 445542 122222 3445677899999999988766 5
Q ss_pred CeEEEEECCCC--ce--eeeeccCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCceeeee--ec---------
Q 009266 83 RRVILWDWKTE--RV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETK--LL--------- 146 (538)
Q Consensus 83 ~~i~iw~~~~~--~~--~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~--~~--------- 146 (538)
+.|..|.+... ++ +.+. .........++++| ++++|+++.. .|.|.++++.....+... .+
T Consensus 62 g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 62 GGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDP--DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred CCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEec--CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 78999988764 32 2222 21334556799999 9999999875 899999999874332221 11
Q ss_pred -cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC--eee--eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 147 -GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATE--LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 147 -~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
........++.|+|+++.++++.-....|++|++.... ... .+... .....+.++|+|++..++++
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~---------~G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP---------PGSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS---------TTSSEEEEEE-TTSSEEEEE
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc---------cCCCCcEEEEcCCcCEEEEe
Confidence 11234578999999996555555555689999997765 322 12211 22246889999985445566
Q ss_pred EeCCCeEEEEEcC--CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCC
Q 009266 222 AGSDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNP 297 (538)
Q Consensus 222 ~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~ 297 (538)
.-..+.|.+|++. .+++...... ..... ..........|+++|+|++|.++. .+.|.+|++......
T Consensus 210 ~e~s~~v~v~~~~~~~g~~~~~~~~------~~~~~-~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-- 280 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSDGSLTEIQTI------STLPE-GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-- 280 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEE------ESCET-TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT--
T ss_pred cCCCCcEEEEeecccCCceeEEEEe------eeccc-cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc--
Confidence 6678899999988 3322110000 00000 011123688999999999988877 448999998431000
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-cCCeEEEeec--cC
Q 009266 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KG 374 (538)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-~dg~i~iwd~--~~ 374 (538)
...+..+... ......+++ +|+|++|+++. .++.|.+|++ .+
T Consensus 281 --------------------------------l~~~~~~~~~--G~~Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 281 --------------------------------LTLVQTVPTG--GKFPRHFAF-SPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp --------------------------------EEEEEEEEES--SSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred --------------------------------eEEEEEEeCC--CCCccEEEE-eCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 1111222221 112578888 99999998876 4578999977 46
Q ss_pred cceeEEee-cCcceeeEEee
Q 009266 375 GELIRVIE-ADRHVVNCIEP 393 (538)
Q Consensus 375 ~~~~~~~~-~h~~~v~~~~~ 393 (538)
|++...-. ..-....||.|
T Consensus 326 G~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 326 GKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TEEEEEEEEEESSSEEEEEE
T ss_pred CcEEEecccccCCCCEEEeC
Confidence 65543332 12234566665
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.6e-14 Score=135.07 Aligned_cols=235 Identities=11% Similarity=0.077 Sum_probs=148.3
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC---CcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
..|.+|+.. |.....+ ..+...+.+.+|+| +|+.|+..+.. ..|.+|++.+++.... ......+...+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCC-CCCceEe-ccCCCCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEEC
Confidence 467777864 4444444 46777899999999 99999887643 4599999988765433 2233456689999
Q ss_pred CCCCcEEEEEcCCCcEEEEe--cCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE-EEeCCCeEEEEEcC--
Q 009266 160 PGSPHVFYTCGEDGLVQHFD--LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEYTRLYDIR-- 234 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~v~iwd~~-- 234 (538)
|++..++++.+.++...||. +.++.. ..+.. +........|+|+ ++.|+ ++...|...||.+.
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~----------~~~~~~~~~wSpD-G~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ----------SSGIDTEPFFSPD-GRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCc-EECCC----------CCCCCcCeEEcCC-CCEEEEEecCCCCcEEEEEECC
Confidence 99965656777888766665 444432 22221 1113456789998 55555 44445666777654
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CC---eEEEeeccCCCCCCCCCCCCcccccccc
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (538)
.++.. ... . ........+|+|+|++|+..+ .+ .|++|++.++..
T Consensus 317 ~g~~~-------------~lt-~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---------------- 364 (427)
T PRK02889 317 GGAAQ-------------RVT-F--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---------------- 364 (427)
T ss_pred CCceE-------------EEe-c--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----------------
Confidence 22210 000 0 112234578999999988765 22 599999876421
Q ss_pred ccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCC---eEEEeeccCcceeEEeecCcce
Q 009266 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRHV 387 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg---~i~iwd~~~~~~~~~~~~h~~~ 387 (538)
+.+.... . .....| +|+|++|+.++.++ .+++.++ +++....+..+.+.
T Consensus 365 -----------------------~~lt~~~-~--~~~p~~-spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~ 416 (427)
T PRK02889 365 -----------------------TALTDTT-R--DESPSF-APNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGD 416 (427)
T ss_pred -----------------------EEccCCC-C--ccCceE-CCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCC
Confidence 1111111 1 345667 99999988776543 4666666 56667777767778
Q ss_pred eeEEeecCC
Q 009266 388 VNCIEPHPH 396 (538)
Q Consensus 388 v~~~~~s~~ 396 (538)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 888899874
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=8.1e-14 Score=134.14 Aligned_cols=235 Identities=12% Similarity=0.119 Sum_probs=151.6
Q ss_pred CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC---CCcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
...|.+|+..... ...+ ..|...+.+.+|+| +|+.|+..+. +..|.+|++.++.... +..+...+...+|
T Consensus 181 ~~~l~~~d~dg~~-~~~l-t~~~~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~ 253 (435)
T PRK05137 181 IKRLAIMDQDGAN-VRYL-TDGSSLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRF 253 (435)
T ss_pred ceEEEEECCCCCC-cEEE-ecCCCCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEE
Confidence 3478899976443 3444 56788999999999 9999888764 4689999998776533 3445567778999
Q ss_pred cCCCCcEEEEEcCCCc--EEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCC--eEEEEEc
Q 009266 159 EPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDE--YTRLYDI 233 (538)
Q Consensus 159 ~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~v~iwd~ 233 (538)
+|+|..++++.+.++. |++|++.++....... +........|+|+ ++.|+..+ ..| .|++|++
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-----------~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-----------SPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCceEEccC-----------CCCccCceeEcCC-CCEEEEEECCCCCCeEEEEEC
Confidence 9999666667766665 7777888776543221 1123566899998 56655554 444 5777787
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC--C--eEEEeeccCCCCCCCCCCCCccccccc
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (538)
..++.. .+. .....+....|+|+|++|+.... + .|.+|++..+.
T Consensus 322 ~g~~~~---------------~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---------------- 369 (435)
T PRK05137 322 DGSNPR---------------RIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---------------- 369 (435)
T ss_pred CCCCeE---------------Eee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----------------
Confidence 654321 111 11234566889999999887652 2 57888865421
Q ss_pred cccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC------CeEEEeeccCcceeEEeec
Q 009266 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC------GRIFIWKKKGGELIRVIEA 383 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d------g~i~iwd~~~~~~~~~~~~ 383 (538)
.+.+.. .. .+..+.| +|+|++|+..+.. ..|+++++..+.. ..+.
T Consensus 370 -----------------------~~~lt~-~~--~~~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~- 420 (435)
T PRK05137 370 -----------------------ERILTS-GF--LVEGPTW-APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP- 420 (435)
T ss_pred -----------------------eEeccC-CC--CCCCCeE-CCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-
Confidence 111111 11 1456677 9999988765442 3688888865544 4444
Q ss_pred CcceeeEEeecCC
Q 009266 384 DRHVVNCIEPHPH 396 (538)
Q Consensus 384 h~~~v~~~~~s~~ 396 (538)
..+.+...+|+|-
T Consensus 421 ~~~~~~~p~Wsp~ 433 (435)
T PRK05137 421 TPGDASDPAWSPL 433 (435)
T ss_pred CCCCccCcccCCC
Confidence 2445677788773
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.5e-14 Score=133.43 Aligned_cols=228 Identities=15% Similarity=0.125 Sum_probs=143.7
Q ss_pred CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEc--CCCcEEEEecCCCCeeeeeeecccCCCCCcceeee
Q 009266 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
..|.+||........ +..+...+...+|+|+|..++++.. ....|++|++.+++........ ..
T Consensus 179 ~~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-----------~~ 244 (429)
T PRK03629 179 YELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-----------RH 244 (429)
T ss_pred eeEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-----------CC
Confidence 368888876544322 3446678999999999954433332 2357999999887654332211 12
Q ss_pred eEEEEEcCCCCcEEE-EEeCCC--eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-
Q 009266 206 LNAIAIDPRNANLFA-VAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND- 281 (538)
Q Consensus 206 v~~~~~~~~~~~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~- 281 (538)
+..++|+|+ ++.|+ +...+| .|++|++.+++.. .+. .+...+....|+|+|+.|+..++
T Consensus 245 ~~~~~~SPD-G~~La~~~~~~g~~~I~~~d~~tg~~~---------------~lt-~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 245 NGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQIR---------------QVT-DGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred cCCeEECCC-CCEEEEEEcCCCCcEEEEEECCCCCEE---------------Ecc-CCCCCcCceEECCCCCEEEEEeCC
Confidence 456899998 45554 445555 5888998876431 111 12335678899999998877663
Q ss_pred -C--eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEE
Q 009266 282 -E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (538)
Q Consensus 282 -~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l 358 (538)
+ .|+++++.++. ...+...... .....| +|+|++|
T Consensus 308 ~g~~~Iy~~d~~~g~---------------------------------------~~~lt~~~~~--~~~~~~-SpDG~~I 345 (429)
T PRK03629 308 AGRPQVYKVNINGGA---------------------------------------PQRITWEGSQ--NQDADV-SSDGKFM 345 (429)
T ss_pred CCCceEEEEECCCCC---------------------------------------eEEeecCCCC--ccCEEE-CCCCCEE
Confidence 3 35555554421 1222222221 345677 9999999
Q ss_pred EEeccC---CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCc---eEEecCCCCcccccCccceeee
Q 009266 359 VSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESD---IKILTPNAADRATLPTNIEQVL 430 (538)
Q Consensus 359 ~~gs~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~---v~vw~~~~~~~~~~~~~~~~~~ 430 (538)
+..+.+ ..|++|++.+++.. .+.. ........|+|+|++|+.++.++. +.++++.......+..+...+.
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 421 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcC
Confidence 876543 46889999887643 3332 123456789999999999887765 6777887666666666555443
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=6.3e-14 Score=134.67 Aligned_cols=200 Identities=15% Similarity=0.172 Sum_probs=131.5
Q ss_pred EEcCCcCcEEEEEEcCCCCEEEEecC---CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEE-EEeCCC--c
Q 009266 56 KLDKHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADG--Q 129 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~g~~l~t~~~---d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~-s~~~dg--~ 129 (538)
.+..|...+.+.+|+|+|+.|+..+. ...|.+|++.+++... + ..+.+...+++|+| +|+.|+ +.+.+| .
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~Sp--DG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSP--DGRRLALTLSRDGNPE 273 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECC--CCCEEEEEEeCCCCce
Confidence 45567788999999999999998764 3479999998877532 2 33445566889999 998775 445555 5
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCc--EEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
|.+|++.++.... +..+.......+|+|++..++++....|. |+++++.+++.... ... .....
T Consensus 274 Iy~~d~~~g~~~~---lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~----------g~~~~ 339 (433)
T PRK04922 274 IYVMDLGSRQLTR---LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQ----------GNYNA 339 (433)
T ss_pred EEEEECCCCCeEE---CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecC----------CCCcc
Confidence 9999998776432 44555556788999999544445445554 66667766654322 211 11234
Q ss_pred EEEEcCCCCcEEEEEeCCC---eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC--C
Q 009266 208 AIAIDPRNANLFAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E 282 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~ 282 (538)
.++|+|+ +++|+..+.++ .|.+|++.+++.. .+.. ........|+|+|++|+..+. +
T Consensus 340 ~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~---------------~Lt~--~~~~~~p~~spdG~~i~~~s~~~g 401 (433)
T PRK04922 340 RASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR---------------TLTP--GSLDESPSFAPNGSMVLYATREGG 401 (433)
T ss_pred CEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE---------------ECCC--CCCCCCceECCCCCEEEEEEecCC
Confidence 6899998 56666554332 6899998776521 1111 112345689999998877653 2
Q ss_pred --eEEEeeccC
Q 009266 283 --FIYLFTQDM 291 (538)
Q Consensus 283 --~i~~~d~~~ 291 (538)
.|+++++..
T Consensus 402 ~~~L~~~~~~g 412 (433)
T PRK04922 402 RGVLAAVSTDG 412 (433)
T ss_pred ceEEEEEECCC
Confidence 577777753
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.2e-13 Score=131.18 Aligned_cols=220 Identities=12% Similarity=0.047 Sum_probs=139.7
Q ss_pred CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC---CCcEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
..|.+|+...... .. +..|...+.+.+|+|++. .|+..+. +..|++|++.+++...... ...
T Consensus 182 ~~l~~~d~dg~~~-~~--lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~-----------~~g 246 (435)
T PRK05137 182 KRLAIMDQDGANV-RY--LTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVGN-----------FPG 246 (435)
T ss_pred eEEEEECCCCCCc-EE--EecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEeec-----------CCC
Confidence 3788888754333 22 556778899999999995 5555432 4679999998886543221 112
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCe--EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND- 281 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~- 281 (538)
.+...+|+|++..++++.+.++. |++|++.+++.. .+..+........|+|+|+.|+..++
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----------------RLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----------------EccCCCCccCceeEcCCCCEEEEEECC
Confidence 45678999985445556666655 777788765421 11122334567899999998887763
Q ss_pred -C--eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEE
Q 009266 282 -E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (538)
Q Consensus 282 -~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l 358 (538)
+ .|++|++..+. .+.+..+... +....| +|+|++|
T Consensus 311 ~g~~~Iy~~d~~g~~---------------------------------------~~~lt~~~~~--~~~~~~-SpdG~~i 348 (435)
T PRK05137 311 SGSPQLYVMNADGSN---------------------------------------PRRISFGGGR--YSTPVW-SPRGDLI 348 (435)
T ss_pred CCCCeEEEEECCCCC---------------------------------------eEEeecCCCc--ccCeEE-CCCCCEE
Confidence 2 58888865421 1222222222 455677 9999999
Q ss_pred EEeccC---CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecC------CceEEecCCCCccccc
Q 009266 359 VSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE------SDIKILTPNAADRATL 422 (538)
Q Consensus 359 ~~gs~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~v~vw~~~~~~~~~~ 422 (538)
+..+.+ ..|.+|++.++. ...+. ....+..+.|+|+|++|+..+.. ..|+++++.++....+
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 876543 368889975544 33333 22357788999999988765543 2577777766554433
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=9.3e-14 Score=125.90 Aligned_cols=279 Identities=13% Similarity=0.121 Sum_probs=191.1
Q ss_pred CCCCce-EEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc--CcEEEEEEcCCCCEEEEecCCC
Q 009266 7 NNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR--GCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 7 ~~~~~~-l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+|+|++ ||||...-.|++|++..-.+ .+..|. ..|.-.-++-|-..++.-..|.
T Consensus 60 s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------KFERhlDae~V~feiLsDD~SK~v~L~~DR 116 (703)
T KOG2321|consen 60 SPDGQYLLATGTYKPQIKVYDLANLSL-----------------------KFERHLDAEVVDFEILSDDYSKSVFLQNDR 116 (703)
T ss_pred cCCCcEEEEecccCCceEEEEccccee-----------------------eeeecccccceeEEEeccchhhheEeecCc
Confidence 578887 77888999999999983222 233343 3455555665655555556677
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
+|-+..- -|..-..- -...-..|+++. -..-|++++....|+-+++..+..+.. +......+++|..++-.
T Consensus 117 ~IefHak-~G~hy~~R---IP~~GRDm~y~~--~scDly~~gsg~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~~h- 187 (703)
T KOG2321|consen 117 TIEFHAK-YGRHYRTR---IPKFGRDMKYHK--PSCDLYLVGSGSEVYRLNLEQGRFLNP--FETDSGELNVVSINEEH- 187 (703)
T ss_pred eeeehhh-cCeeeeee---cCcCCccccccC--CCccEEEeecCcceEEEEccccccccc--cccccccceeeeecCcc-
Confidence 7776542 23321111 112334566665 344455555567788899998887765 66667899999999988
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeeccc-CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPI-DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
.+|++|+.+|.|..||.+....+..+..... ...++.-....|+++.|+.+ |..+++|+..|.|.|||+++.+..
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl--- 263 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPL--- 263 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCce---
Confidence 6999999999999999999888777665433 11222223446999999987 899999999999999999987521
Q ss_pred CCCCCCcccCCCCccCCCccceEEEEEcCC--CCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
...-.....+|..+.|.+. +..|++.....++||+-.+++....
T Consensus 264 -----------~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~as----------------------- 309 (703)
T KOG2321|consen 264 -----------LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMAS----------------------- 309 (703)
T ss_pred -----------eecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceee-----------------------
Confidence 1111223467899999886 4567766667899999887643222
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccC
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~ 374 (538)
+.. . ..+..+|+ -|++-++++|-..+.+..|=+..
T Consensus 310 ---------------iEp-t--~~lND~C~-~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 310 ---------------IEP-T--SDLNDFCF-VPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ---------------ccc-c--CCcCceee-ecCCceEEEecCCCcceeEEccc
Confidence 111 1 12778888 68888999998888877776644
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=9.4e-13 Score=122.36 Aligned_cols=291 Identities=13% Similarity=0.170 Sum_probs=173.5
Q ss_pred EEEecCC----CeEEEEEC--CCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC----CCcEEEeecccC--ceeee
Q 009266 76 LISGSDD----RRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILER--GGVET 143 (538)
Q Consensus 76 l~t~~~d----~~i~iw~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~----dg~v~vwd~~~~--~~~~~ 143 (538)
++.|+.. +.|.+|.+ .+++....-..........|+++| ++++|+++.. .+.|..|.+... .....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 4445554 68999988 455442222122445667789999 9999998876 578999998764 33222
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC-Ceeeeeeec--c-cCCCCCcceeeeeEEEEEcCCCCcEE
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCR--P-IDDRRNYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l 219 (538)
............++++|++..++++....|.|.++++... ......... . ..............++.|+|++..++
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 2233234456789999999655555567899999999874 333221111 0 00000011223467899999843344
Q ss_pred EEEeCCCeEEEEEcCCcc--ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCC
Q 009266 220 AVAGSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGP 295 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~ 295 (538)
++.-....|++|++.... +... ...........+.++|+|+++++.+.. .+.|.+|++......
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~------------~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPV------------DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEE------------EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred EEecCCCEEEEEEEeCCCceEEEe------------eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 444456689999997654 2110 011112345688999999999887776 558999988731100
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec----cccceeeeEEEEecCCCcEEEEec-cCCeEEEe
Q 009266 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG----HRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIW 370 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~v~~~s~~~~~l~~gs-~dg~i~iw 370 (538)
....+.+.. .........+++ +|+|++|+++. ..+.|.+|
T Consensus 228 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 228 ----------------------------------LTEIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp ----------------------------------EEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEE
T ss_pred ----------------------------------eeEEEEeeeccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEE
Confidence 001111110 111112567887 99999988755 45789999
Q ss_pred ecc--Ccc--eeEEeecCcceeeEEeecCCCCeEEEee-cCCceEEecCC
Q 009266 371 KKK--GGE--LIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN 415 (538)
Q Consensus 371 d~~--~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~ 415 (538)
++. +++ .+..+.......+.++++|+|++|+++. .++.|.+|++.
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 993 333 3344444344589999999999888776 56789999764
No 240
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=6.5e-13 Score=120.05 Aligned_cols=318 Identities=13% Similarity=0.162 Sum_probs=201.2
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC----
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD---- 81 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~---- 81 (538)
++|.|.+|+|-...| |.+|--.+-..+ +.+. |. .|.-+.|||..+||+|-+.
T Consensus 218 wSP~GTYL~t~Hk~G-I~lWGG~~f~r~---------------------~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 218 WSPKGTYLVTFHKQG-IALWGGESFDRI---------------------QRFY-HP-GVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred ecCCceEEEEEeccc-eeeecCccHHHH---------------------Hhcc-CC-CceeeecCCccceEEEecCCccc
Confidence 578999999988776 788866543332 2232 44 4888999999999999754
Q ss_pred -------CCeEEEEECCCCceeeeecc--CCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 82 -------DRRVILWDWKTERVKLSFHS--GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 82 -------d~~i~iw~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
-..++|||+.+|...+.+.. .....-.-..||. +++++|.-.. ..|.|+...+-..+..+.+ ....
T Consensus 274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--ki~g 348 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTG-NSISIYETPSFMLLDKKSL--KISG 348 (698)
T ss_pred cCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc--CCceeEEecc-ceEEEEecCceeeeccccc--CCcc
Confidence 25799999999998888743 2222334568998 9999998776 5789998766444333222 3456
Q ss_pred cEEEEEcCCCCcEEEEEcC-----CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE-----
Q 009266 153 AHKLAIEPGSPHVFYTCGE-----DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA----- 222 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----- 222 (538)
|....|+|.+ ++||-=.. -.++.+..+.+++.+....... ..=..+.|-.+ |.+|+.-
T Consensus 349 Ir~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn----------VsDckLhWQk~-gdyLcvkvdR~t 416 (698)
T KOG2314|consen 349 IRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN----------VSDCKLHWQKS-GDYLCVKVDRHT 416 (698)
T ss_pred ccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeecccee----------eeccEEEeccC-CcEEEEEEEeec
Confidence 8889999987 56654221 1345666666665554433221 11233455554 4555532
Q ss_pred -----eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC----CeEEEeeccCCC
Q 009266 223 -----GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDMGL 293 (538)
Q Consensus 223 -----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----~~i~~~d~~~~~ 293 (538)
+.-..+.|+.++.... | .. .-.-...|...+|-|.|..+++.+. .++.+|-+.+..
T Consensus 417 K~~~~g~f~n~eIfrireKdI--------p------ve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 417 KSKVKGQFSNLEIFRIREKDI--------P------VE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred cccccceEeeEEEEEeeccCC--------C------ce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence 1122455666665432 1 11 1112457889999999987766552 268888877421
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe---ccCCeEEEe
Q 009266 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG---SDCGRIFIW 370 (538)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g---s~dg~i~iw 370 (538)
. +...+..+... ..+.+.| +|.|++++.+ |..|.+.++
T Consensus 482 ~----------------------------------~~~lVk~~dk~----~~N~vfw-sPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 482 K----------------------------------KPSLVKELDKK----FANTVFW-SPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred C----------------------------------chhhhhhhccc----ccceEEE-cCCCcEEEEEEecccccceEEE
Confidence 1 12233333331 2667877 9999998875 456889999
Q ss_pred eccCcceeEEeecCcceeeEEeecCCCCeEEEeec------CCceEEecCCCCc
Q 009266 371 KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAAD 418 (538)
Q Consensus 371 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~v~vw~~~~~~ 418 (538)
|+.-..+..+-.......+.+.|.|.|+|++|++. |..-+||++++..
T Consensus 523 D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 523 DTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred ecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 98743333222222235688999999999999976 4556788877643
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.61 E-value=2.3e-12 Score=115.50 Aligned_cols=314 Identities=13% Similarity=0.152 Sum_probs=205.5
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
++.++|.|.+|++....+ |.+|....+..+ ..+. ...|.-+.|+|.++||.|-+..
T Consensus 37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l---------------------~~~~--~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 37 YVSESPLGTYLFSEHAAG-VECWGGPSKAKL---------------------VRFR--HPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred heeecCcchheehhhccc-eEEccccchhhe---------------------eeee--cCCceecccCcccceeeeeccC
Confidence 456789999999887664 889988755432 2233 3468999999999999986553
Q ss_pred C---------------eEEEEECCCCceeeeeccCCCCC--eE-EEEEeecCCCceEEEEeCCCcEEEeecccCceeeee
Q 009266 83 R---------------RVILWDWKTERVKLSFHSGHNDN--VF-QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (538)
Q Consensus 83 ~---------------~i~iw~~~~~~~~~~~~~~~~~~--v~-~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 144 (538)
+ .+.+||+.+|..+..+ .....+ .+ -+.|+- +..++|-. ....++|+++ +..... .
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~--~D~y~ARv-v~~sl~i~e~-t~n~~~-~ 166 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSI--DDKYVARV-VGSSLYIHEI-TDNIEE-H 166 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeee--cchhhhhh-ccCeEEEEec-CCcccc-C
Confidence 3 4999999999998887 444443 44 678888 77777755 3457999997 332211 1
Q ss_pred eccc-cCCCcEEEEEcCCCCc-EEEE-----EcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 145 LLGK-HQGRAHKLAIEPGSPH-VFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 145 ~~~~-~~~~v~~~~~~~~~~~-~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
.+.. ....|....|+|.+.+ .|+. .+..+++++|.+..+..+.+...... .-..+.|.+. +.
T Consensus 167 p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~----------~~~qLkW~~~-g~ 235 (561)
T COG5354 167 PFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV----------SGVQLKWQVL-GK 235 (561)
T ss_pred chhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee----------cccEEEEecC-Cc
Confidence 1111 1356788899987422 2332 45678899999987666554433221 2356788887 44
Q ss_pred EEEEEe-----------CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc---CCe
Q 009266 218 LFAVAG-----------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEF 283 (538)
Q Consensus 218 ~l~~~~-----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~~~ 283 (538)
+|++-. ....++|++++.... +... ...++|..++|.|.++.+++.+ .-.
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i--------------~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI--------------PVEK--DLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccccc--------------ceec--cccccceeeeecccCCceeEEecccccc
Confidence 443311 124567777764331 1111 3367899999999988776655 236
Q ss_pred EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc
Q 009266 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (538)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~ 363 (538)
+.+++++... .+...... -..+.| +|.+++++.++-
T Consensus 300 ~s~~~lr~Nl-----------------------------------------~~~~Pe~~--rNT~~f-sp~~r~il~agF 335 (561)
T COG5354 300 VSVFDLRGNL-----------------------------------------RFYFPEQK--RNTIFF-SPHERYILFAGF 335 (561)
T ss_pred eeecccccce-----------------------------------------EEecCCcc--cccccc-cCcccEEEEecC
Confidence 8888887531 11111111 234555 999999998776
Q ss_pred C---CeEEEeeccCcceeE-EeecCcceeeEEeecCCCCeEEEee------cCCceEEecCCCCcc
Q 009266 364 C---GRIFIWKKKGGELIR-VIEADRHVVNCIEPHPHSTVLASSG------IESDIKILTPNAADR 419 (538)
Q Consensus 364 d---g~i~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~------~dg~v~vw~~~~~~~ 419 (538)
+ |.|-+|+......+. .+.+.. ..-+.|+|+++++.+.. .|..|+||++.....
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 5 789999987665443 565433 45678999999877663 378899999987544
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.8e-13 Score=129.66 Aligned_cols=216 Identities=12% Similarity=0.064 Sum_probs=129.2
Q ss_pred CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC-C--CcEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-D--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
..|.++|... ..... +..+...+.+.+|+|++. .|+..+. + ..|++|++.+++....... ..
T Consensus 176 ~~L~~~D~dG-~~~~~--l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-----------~g 240 (427)
T PRK02889 176 YQLQISDADG-QNAQS--ALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVANF-----------KG 240 (427)
T ss_pred cEEEEECCCC-CCceE--eccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEeecC-----------CC
Confidence 3566666643 22222 445777899999999995 5554443 2 4599999998876433221 11
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEEEEcC--CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND- 281 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~- 281 (538)
.+.+.+|+|++..++++.+.+|...||.+. .+.. .. ...+........|+|+|+.|+..++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---------------~~-lt~~~~~~~~~~wSpDG~~l~f~s~~ 304 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL---------------RR-LTQSSGIDTEPFFSPDGRSIYFTSDR 304 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCc---------------EE-CCCCCCCCcCeEEcCCCCEEEEEecC
Confidence 356789999844444567778877776653 3221 11 1112334566789999998876663
Q ss_pred -CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE
Q 009266 282 -EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (538)
Q Consensus 282 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~ 360 (538)
+...+|.+.... . ....+...... .....| ||+|++|+.
T Consensus 305 ~g~~~Iy~~~~~~------------------------------------g-~~~~lt~~g~~--~~~~~~-SpDG~~Ia~ 344 (427)
T PRK02889 305 GGAPQIYRMPASG------------------------------------G-AAQRVTFTGSY--NTSPRI-SPDGKLLAY 344 (427)
T ss_pred CCCcEEEEEECCC------------------------------------C-ceEEEecCCCC--cCceEE-CCCCCEEEE
Confidence 345555443210 0 01111111111 334567 999999987
Q ss_pred eccCC---eEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCC-c--eEEecCCC
Q 009266 361 GSDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES-D--IKILTPNA 416 (538)
Q Consensus 361 gs~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~--v~vw~~~~ 416 (538)
.+..+ .|++|++.+++... +.. ........|+|++++|+.++.++ . +.+.++..
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 76554 69999998876543 332 23457789999999888776544 2 44444533
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.2e-13 Score=117.88 Aligned_cols=207 Identities=11% Similarity=0.114 Sum_probs=150.1
Q ss_pred EEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeccCCCCCeEEEEEeecCCCceEEEEeCC--Cc
Q 009266 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--GQ 129 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d--g~ 129 (538)
......++|..++.. ...|++|-.+|.+.+|....+. .+..+ .....+..|.-+| .....+++|+.. ..
T Consensus 100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~-~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTD-TDPYIVATGGKENINE 174 (412)
T ss_pred ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCC-CCCceEecCchhcccc
Confidence 344456777777765 3467788888999999988543 12222 2235677777776 234556668888 88
Q ss_pred EEEeecccCceeeeeecc-------ccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEEecCCCC-eeeeeeecccCCCCCc
Q 009266 130 VRHAQILERGGVETKLLG-------KHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNY 200 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 200 (538)
++||++...+.+....-. .-.-.++.+.|.+.. ++.|++++.-+.||+||.+.++ ++..+...
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-------- 246 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-------- 246 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--------
Confidence 999999877544321100 012346788888761 2689999999999999998653 44444432
Q ss_pred ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc
Q 009266 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (538)
Q Consensus 201 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (538)
..+++++...|. +++|++|..-|.+..||++.+++. ...+.+-.+.|+++..+|.+++|++++
T Consensus 247 --E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~--------------g~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 247 --ENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLL--------------GCGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred --cCcceeeeecCC-CcEEEEecccchhheecccCceee--------------ccccCCccCCcceEEEcCCCceEEeec
Confidence 337999999997 899999999999999999998753 233445578899999999999999999
Q ss_pred -CCeEEEeeccCC
Q 009266 281 -DEFIYLFTQDMG 292 (538)
Q Consensus 281 -~~~i~~~d~~~~ 292 (538)
+..++|+|+.+.
T Consensus 310 LDRyvRIhD~ktr 322 (412)
T KOG3881|consen 310 LDRYVRIHDIKTR 322 (412)
T ss_pred cceeEEEeecccc
Confidence 669999999874
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=1.5e-13 Score=115.28 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=86.9
Q ss_pred ccceEEEEEcCCCCEEEEEc---CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee
Q 009266 261 QVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
..+|..++|+|+|+.+|+.. ...|.+|+++. ..+..+.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------------------------------------~~i~~~~ 99 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------------------------------------KKIFSFG 99 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------------------------------------cEeEeec
Confidence 45699999999998876553 34799999852 1223333
Q ss_pred ccccceeeeEEEEecCCCcEEEEecc---CCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeec------CCc
Q 009266 338 GHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESD 408 (538)
Q Consensus 338 ~~~~~~~i~~v~~~s~~~~~l~~gs~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~ 408 (538)
.. .+..+.| +|+|++|++|+. .|.|.+||+.+.+.+..+. |. .++.++|+|+|++|+++.. |..
T Consensus 100 --~~--~~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng 172 (194)
T PF08662_consen 100 --TQ--PRNTISW-SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNG 172 (194)
T ss_pred --CC--CceEEEE-CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceecccc
Confidence 22 2678888 999999999864 3679999999888887765 33 4789999999999998864 788
Q ss_pred eEEecCCCCcc
Q 009266 409 IKILTPNAADR 419 (538)
Q Consensus 409 v~vw~~~~~~~ 419 (538)
++||+..+..+
T Consensus 173 ~~Iw~~~G~~l 183 (194)
T PF08662_consen 173 FKIWSFQGRLL 183 (194)
T ss_pred EEEEEecCeEe
Confidence 99999976544
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.58 E-value=1.8e-12 Score=107.97 Aligned_cols=206 Identities=16% Similarity=0.216 Sum_probs=146.6
Q ss_pred cCcEEEEEEcC---CCC-EEEEecCCCeEEEEECCCCceeeeeccCCC---C---CeEEEEEeecCCCceEEEEeCCCcE
Q 009266 61 RGCVNTVSFNT---DGD-ILISGSDDRRVILWDWKTERVKLSFHSGHN---D---NVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 61 ~~~v~~~~~s~---~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~---~---~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
...+..|.|.. +|. .|+-+-..|.|.++..........+ .+-. - ...++.|++ .+..++++-.+|.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSI 145 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeec--cCceEEEEcCCCcE
Confidence 44566677764 444 5667778899999987654433333 2211 1 244677888 88889999999999
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
.+-+...........++.|.-.+..+.|+...++++++|+.|+.+..||+|..+ ...+...+ .|...|.+|.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~k-------vH~~GV~SI~ 217 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSK-------VHTSGVVSIY 217 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecce-------eeecceEEEe
Confidence 966665555544456889999999999999888999999999999999999433 11222111 1566899999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC--CCEEEEEcCCeEEEee
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFT 288 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~i~~~d 288 (538)
-+|..+.+|++|+.|-.|++||.|+... |+ ......+.|..+.++|. +++|+++-.+..+|.+
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl-------~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGK--------PL-------FKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccC--------cc-------ccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 9987789999999999999999996531 11 11122478999999995 4566666666667777
Q ss_pred ccCC
Q 009266 289 QDMG 292 (538)
Q Consensus 289 ~~~~ 292 (538)
+...
T Consensus 283 ~~~~ 286 (339)
T KOG0280|consen 283 SSDK 286 (339)
T ss_pred eccc
Confidence 6653
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=127.42 Aligned_cols=149 Identities=22% Similarity=0.323 Sum_probs=124.2
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
++++.-++++|+.-+.|.+|....-... ..+.||.+.|..+.|+-+|+++++.|.|+++
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsi 199 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKP---------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSI 199 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCc---------------------ceecccCCceEEEEEccCCcEEEEEecCcce
Confidence 4566778999999999999998822211 2688999999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC-CCcEEEEEcCCCCc
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPH 164 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 164 (538)
|+|.+.+++......-+|...|+.++|.| + +++|++.|.+.++|...- ..+. .+..|. ..|..++..+.. .
T Consensus 200 RlW~i~s~~~~~~~~fgHsaRvw~~~~~~--n--~i~t~gedctcrvW~~~~-~~l~--~y~~h~g~~iw~~~~~~~~-~ 271 (967)
T KOG0974|consen 200 RLWPIDSREVLGCTGFGHSARVWACCFLP--N--RIITVGEDCTCRVWGVNG-TQLE--VYDEHSGKGIWKIAVPIGV-I 271 (967)
T ss_pred eeeecccccccCcccccccceeEEEEecc--c--eeEEeccceEEEEEeccc-ceeh--hhhhhhhcceeEEEEcCCc-e
Confidence 99999999877644469999999999998 5 999999999999996543 2222 355665 468899999887 6
Q ss_pred EEEEEcCCCcEEEEecCCC
Q 009266 165 VFYTCGEDGLVQHFDLRTG 183 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~ 183 (538)
+++|++.|+.+++|++...
T Consensus 272 ~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEeeccCcchhhhhhhcc
Confidence 8999999999999998653
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1e-10 Score=101.19 Aligned_cols=301 Identities=14% Similarity=0.152 Sum_probs=184.9
Q ss_pred CCceEEeeecc--CceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC---CCeEEEEECCC-
Q 009266 19 KALVDVWLREL--GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKT- 92 (538)
Q Consensus 19 d~~v~iwd~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~---d~~i~iw~~~~- 92 (538)
..-|++|++.+ |++. ...+-.+.+.++-|+|+|++++|.++.. .|.|..|.+..
T Consensus 15 s~gI~v~~ld~~~g~l~--------------------~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~ 74 (346)
T COG2706 15 SQGIYVFNLDTKTGELS--------------------LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD 74 (346)
T ss_pred CCceEEEEEeCcccccc--------------------hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC
Confidence 56799999874 3321 1223346788999999999999988755 47788887764
Q ss_pred -Cceeeeec-cCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCcee-eeeeccccCCC----------cEEEEE
Q 009266 93 -ERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGV-ETKLLGKHQGR----------AHKLAI 158 (538)
Q Consensus 93 -~~~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~-~~~~~~~~~~~----------v~~~~~ 158 (538)
|+....-. .....+-..+++++ ++++|+++.. .|.|.++-+.....+ ....+..|... +....+
T Consensus 75 ~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~ 152 (346)
T COG2706 75 DGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF 152 (346)
T ss_pred CCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee
Confidence 44321110 11223447899999 9999999875 589999998763322 22123334444 888999
Q ss_pred cCCCCcEEEEEc-CCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCc
Q 009266 159 EPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRKY 236 (538)
Q Consensus 159 ~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~ 236 (538)
.|++ ++|++.. .--.|.+|++..++....-...-. .....+-|.|+|+ +++..+.+ -+++|-+|.....
T Consensus 153 tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-------~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 153 TPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-------PGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCCC-CEEEEeecCCceEEEEEcccCccccccccccC-------CCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCC
Confidence 9999 4555553 334699999997765433222111 2234688999998 56655544 5889999998873
Q ss_pred --cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC--eEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 237 --KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
++... ....+++.-. ........|.++|+|++|.++..+ .|.+|.+......
T Consensus 224 ~g~~~~l------Q~i~tlP~dF-~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~----------------- 279 (346)
T COG2706 224 VGKFEEL------QTIDTLPEDF-TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK----------------- 279 (346)
T ss_pred CceEEEe------eeeccCcccc-CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------------
Confidence 22111 0011111111 124577889999999999999855 7888887642110
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC-CeEEEeecc--CcceeEEee-cCccee
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKK--GGELIRVIE-ADRHVV 388 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d-g~i~iwd~~--~~~~~~~~~-~h~~~v 388 (538)
.........+.. .-....| +|.|++|+++..+ ..|.+|.+. +|++-.... ......
T Consensus 280 -----------------L~~~~~~~teg~--~PR~F~i-~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~P 339 (346)
T COG2706 280 -----------------LELVGITPTEGQ--FPRDFNI-NPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEP 339 (346)
T ss_pred -----------------EEEEEEeccCCc--CCcccee-CCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCc
Confidence 000111111111 1456666 9999999988876 468888764 555443332 233445
Q ss_pred eEEeec
Q 009266 389 NCIEPH 394 (538)
Q Consensus 389 ~~~~~s 394 (538)
.||.|.
T Consensus 340 vcv~f~ 345 (346)
T COG2706 340 VCVKFL 345 (346)
T ss_pred EEEEEc
Confidence 666664
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=8.1e-13 Score=110.84 Aligned_cols=151 Identities=11% Similarity=0.202 Sum_probs=105.7
Q ss_pred EEEEEcCCCCEEEEecC----------CCeEEEEECCCC-ceeeeeccCCCCCeEEEEEeecCCCceEEEE--eCCCcEE
Q 009266 65 NTVSFNTDGDILISGSD----------DRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC--AADGQVR 131 (538)
Q Consensus 65 ~~~~~s~~g~~l~t~~~----------d~~i~iw~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~--~~dg~v~ 131 (538)
..+.|+|.|.+|+.-.. -+...||.+... .....+.....++|.+++|+| +|..||++ ...+.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP--~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP--NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc--CCCEEEEEEccCCcccE
Confidence 45789999988765322 234666666332 333333233456799999999 88887654 3567999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC---CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
+|+++ .+.+.. + +...+..|.|+|+| ++|++++. .|.|.+||+++.+.+.... +. .+..
T Consensus 87 lyd~~-~~~i~~--~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----------~~-~~t~ 148 (194)
T PF08662_consen 87 LYDVK-GKKIFS--F--GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTFE-----------HS-DATD 148 (194)
T ss_pred EEcCc-ccEeEe--e--cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeeccc-----------cC-cEEE
Confidence 99996 333322 3 35678899999999 57777654 4679999999877766554 11 4689
Q ss_pred EEEcCCCCcEEEEEeC------CCeEEEEEcCCc
Q 009266 209 IAIDPRNANLFAVAGS------DEYTRLYDIRKY 236 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~------dg~v~iwd~~~~ 236 (538)
++|+|+ |++|+++.. |..++||+....
T Consensus 149 ~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 149 VEWSPD-GRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEcCC-CCEEEEEEeccceeccccEEEEEecCe
Confidence 999998 788887764 678899998643
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=3.9e-13 Score=114.31 Aligned_cols=259 Identities=12% Similarity=0.196 Sum_probs=165.4
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCC------------cCcEEEEEEcCCC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH------------RGCVNTVSFNTDG 73 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~s~~g 73 (538)
|...|.+||||...|.|.++....... ..+.....++.| ...|+.++|.+++
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~----------------~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYK----------------GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccc----------------cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 567899999999999999997662211 011122233333 3578999999865
Q ss_pred --CEEEEecCCCeEEEEECCCCc-----------------------------------eeeeeccCCCCCeEEEEEeecC
Q 009266 74 --DILISGSDDRRVILWDWKTER-----------------------------------VKLSFHSGHNDNVFQAKIMPFT 116 (538)
Q Consensus 74 --~~l~t~~~d~~i~iw~~~~~~-----------------------------------~~~~~~~~~~~~v~~l~~~~~~ 116 (538)
..++..+.|.+|++|.+.... +.+.+..+|.-.|++|.++.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-- 174 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-- 174 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC--
Confidence 456666789999999875321 11223357888899999998
Q ss_pred CCceEEEEeCCCcEEEeecccCcee-eeeeccc-----cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee----
Q 009266 117 DDRSIVTCAADGQVRHAQILERGGV-ETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT---- 186 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---- 186 (538)
+...++++. |=.|.+|++.-.... ...-++. .+.-|++..|+|..-++|+-.+..|+|++-|++.....
T Consensus 175 D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 175 DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 888888876 568999998643221 1111222 23568899999988788899999999999999954321
Q ss_pred eeeeecccCCCCC-c-ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCC-----
Q 009266 187 ELFTCRPIDDRRN-Y-MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD----- 259 (538)
Q Consensus 187 ~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 259 (538)
+.+..+.....+. . .-...|..+.|++. |+++++-.. -+|++||+.... .|+..+..+.....
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~--------~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEA--------KPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccC--------CcceEEeehHhHHHHHHHH
Confidence 1121111110000 0 02246888999997 788886432 689999995432 12222111111100
Q ss_pred -Cc---cceEEEEEcCCCCEEEEEcC-CeEEEeeccCCC
Q 009266 260 -EQ---VGITGLAFSDQSELLVSYND-EFIYLFTQDMGL 293 (538)
Q Consensus 260 -~~---~~i~~~~~s~~~~~l~~~~~-~~i~~~d~~~~~ 293 (538)
.. -.-..++|+.++.++++|+. +.+++|++..+.
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 01 11245789999999999994 578999976554
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=1e-12 Score=127.70 Aligned_cols=280 Identities=14% Similarity=0.110 Sum_probs=190.3
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeE---EEEEeecCCCceEEEEeCCCcEEEeecc
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF---QAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~---~l~~~~~~~~~~l~s~~~dg~v~vwd~~ 136 (538)
|-+++++.++-. .||+.|.. ..|.+|++..+..+..+...+.-.+. ...- - .+.+++++..-+.+..=...
T Consensus 6 ~~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-l--~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-L--LSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccce-e--ccceEEEEEeecceeecchh
Confidence 345555555544 67776654 57999999988765554322222222 0000 0 23455666554444432221
Q ss_pred cCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
... .......|....+.... ..++.+..+..+.+|+...+.....+.....- .-....-+.+++. .
T Consensus 80 ~~~------~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~------~l~~~~~~g~s~~-~ 145 (967)
T KOG0974|consen 80 NQI------IERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERC------TLYSSLIIGDSAE-E 145 (967)
T ss_pred hhh------hhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceE------EEEeEEEEeccCc-E
Confidence 110 11223334444455445 46777788889999999887766555432210 1112233445665 6
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGP 295 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~ 295 (538)
-++++|+.-+.|.+|.....+ ++....+|.+.|.++.++.+|+++++.+++ .+++|.+.+..
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn---------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~-- 208 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDN---------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE-- 208 (967)
T ss_pred EEEEeccccccEEEEeccccC---------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc--
Confidence 789999999999999988332 223566789999999999999999999977 89999998842
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc
Q 009266 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
......-+|... ++.++| .|+ +|++++.|.+.++|.. .+
T Consensus 209 -----------------------------------~~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~-~~ 247 (967)
T KOG0974|consen 209 -----------------------------------VLGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGV-NG 247 (967)
T ss_pred -----------------------------------ccCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEec-cc
Confidence 222356678776 999998 787 9999999999999975 56
Q ss_pred ceeEEeecCc-ceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 376 ELIRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 376 ~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
+.+..+..|. ..|..++..+....++|++.|+.+++|++...
T Consensus 248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 6666888887 57999999999999999999999999998754
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.1e-10 Score=101.02 Aligned_cols=287 Identities=11% Similarity=0.174 Sum_probs=176.9
Q ss_pred CCeEEEEECCC--CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC---CcEEEeeccc--CceeeeeeccccCCCcE
Q 009266 82 DRRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILE--RGGVETKLLGKHQGRAH 154 (538)
Q Consensus 82 d~~i~iw~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~v~vwd~~~--~~~~~~~~~~~~~~~v~ 154 (538)
..-|.+|++.+ |+.....+..+.+.++-|+|+| ++++|+++... |.|..|.+.. ++............+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 35699999874 3332222346778899999999 99999988654 7788887764 33322221222233448
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEecCC-CCeeeeeee--cccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCCeEEE
Q 009266 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTC--RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRL 230 (538)
Q Consensus 155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~i 230 (538)
.+++++++..++.+-..-|.|.++-++. |........ +........+....+.+..|.|+ +++|++.. .--.|.+
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFL 171 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEE
Confidence 8999999954444444568899999976 333222111 11110000011223678899998 56666554 4457999
Q ss_pred EEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCC-CCCCCCCCCccccc
Q 009266 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGL-GPNPPPSSPVSTRS 307 (538)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~-~~~~~~~~~~~~~~ 307 (538)
|++..+++..... ... ......+.|+|+|++++..... +++|.+|...... .+..++
T Consensus 172 y~~~dg~L~~~~~----------~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ-------- 231 (346)
T COG2706 172 YDLDDGKLTPADP----------AEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ-------- 231 (346)
T ss_pred EEcccCccccccc----------ccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee--------
Confidence 9999877543311 111 2345678999999999877766 6799999987631 111110
Q ss_pred cccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC-CeEEEeeccCc-cee---EEee
Q 009266 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGG-ELI---RVIE 382 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d-g~i~iwd~~~~-~~~---~~~~ 382 (538)
........|.+... ...+.. +|+|++|.++..- ..|.+|.+... ..+ ....
T Consensus 232 --------------------~i~tlP~dF~g~~~---~aaIhi-s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~ 287 (346)
T COG2706 232 --------------------TIDTLPEDFTGTNW---AAAIHI-SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP 287 (346)
T ss_pred --------------------eeccCccccCCCCc---eeEEEE-CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec
Confidence 00111222333332 567777 9999999887543 47888887543 222 2233
Q ss_pred cCcceeeEEeecCCCCeEEEeecC-CceEEecCC
Q 009266 383 ADRHVVNCIEPHPHSTVLASSGIE-SDIKILTPN 415 (538)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~d-g~v~vw~~~ 415 (538)
.+....+.+.|+|.+++|++++.+ .+|.||...
T Consensus 288 teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 288 TEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 344557999999999998888765 468888764
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.52 E-value=1.7e-10 Score=104.22 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=167.4
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC----------CCcEEEeecccCceeeeeecccc---
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVETKLLGKH--- 149 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~~~~--- 149 (538)
++|.+.|..+++.+.++..+..... + ++| +++.|+++.. +..|.+||+.+.+.+....+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 8899999999998888855543332 4 999 9998887766 78999999999988766444221
Q ss_pred --CCCcEEEEEcCCCCcEEEEEc-C-CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC
Q 009266 150 --QGRAHKLAIEPGSPHVFYTCG-E-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (538)
Q Consensus 150 --~~~v~~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 225 (538)
......++++|+|+ +|++.. . +..|.++|+.+++.+..+..... ..-...++. ..+ +-+.|
T Consensus 102 ~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-----------~~vy~t~e~-~~~--~~~~D 166 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-----------YHIFPTAND-TFF--MHCRD 166 (352)
T ss_pred hccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-----------cEEEEecCC-ccE--EEeec
Confidence 22345789999995 555444 4 78999999999999887764221 111112211 111 22233
Q ss_pred CeEEEEEcCCccccCCCCCCCCCcccCC-CCccCCCccceEEEEEcC-CCCEEEEEcCCeEEEeeccCCCCCCCCCCCCc
Q 009266 226 EYTRLYDIRKYKWDGSTDFGQPADYFCP-PNLIGDEQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPV 303 (538)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~ 303 (538)
|......+......... ..++ +.. ..... ..+ .|.+ +|+++.....|.|++.|+........
T Consensus 167 g~~~~v~~d~~g~~~~~--~~~v--f~~~~~~v~--~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~------ 230 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIK--PTEV--FHPEDEYLI--NHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFL------ 230 (352)
T ss_pred CceEEEEecCCCceEEe--eeee--ecCCccccc--cCC----ceEcCCCcEEEEecCCeEEEEecCCCcceec------
Confidence 33333222211100000 0000 000 00000 111 3455 88888888789999999754321110
Q ss_pred cccccccccCCCCccccCCCCCCCCcccCCceeec-----cccceeeeEEEEecCCCcEEEEec----------cCCeEE
Q 009266 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-----HRNCVTVKGVNFFGPKCEYVVSGS----------DCGRIF 368 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~v~~~s~~~~~l~~gs----------~dg~i~ 368 (538)
.....+.. .-.+..+..+++ +|++++|++.. ..+.|.
T Consensus 231 ---------------------------~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 231 ---------------------------PAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred ---------------------------ceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCCEEE
Confidence 00011100 001111334777 99998887742 225799
Q ss_pred EeeccCcceeEEeecCcceeeEEeecCCCC-eEEEee-cCCceEEecCCCCcccc
Q 009266 369 IWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRAT 421 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~v~vw~~~~~~~~~ 421 (538)
++|+.+++.+..+.. ...+..++++|+++ +|++.. .++.|.|.|+.+++...
T Consensus 283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 999999999998874 34789999999999 877666 67889999998876543
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=5.6e-12 Score=121.82 Aligned_cols=233 Identities=12% Similarity=0.098 Sum_probs=143.7
Q ss_pred CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC---CcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
...|.+++...+. ...+ ..+...+...+|+| +|++|+.+... ..|++|++.++.... +..+...+.+++|
T Consensus 169 ~~~l~~~d~~g~~-~~~l-~~~~~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~ 241 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTI-TRSREPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAF 241 (417)
T ss_pred cceEEEEcCCCCC-CEEe-ecCCCceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEE
Confidence 3468888875443 3444 35666789999999 99999887653 479999998775543 2334556677999
Q ss_pred cCCCCcEEEEEcCCC--cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCC--eEEEEEc
Q 009266 159 EPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDE--YTRLYDI 233 (538)
Q Consensus 159 ~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~v~iwd~ 233 (538)
+|++..++++.+.++ .|++|++.++....... . ........|+|+ ++.|+..+ ..+ .|+++++
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~----------~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-G----------PGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEEECCC-C----------CCCCCCEEECCC-CCEEEEEECCCCCceEEEEEC
Confidence 999965656665554 58889988776443322 1 112345689998 55555444 344 5777777
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC----eEEEeeccCCCCCCCCCCCCccccccc
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (538)
.+++.. . ...+...+..+.|+|+|++|+.+..+ .|++|++.++.
T Consensus 310 ~~~~~~---------------~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~---------------- 357 (417)
T TIGR02800 310 DGGEVR---------------R-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG---------------- 357 (417)
T ss_pred CCCCEE---------------E-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC----------------
Confidence 654321 0 11123345678999999988877632 68888876531
Q ss_pred cccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCC---eEEEeeccCcceeEEeecCcc
Q 009266 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRH 386 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg---~i~iwd~~~~~~~~~~~~h~~ 386 (538)
.+.+..... .....| +|+|++|+..+.++ .+++.+. +++....+..+.+
T Consensus 358 -----------------------~~~l~~~~~---~~~p~~-spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g 409 (417)
T TIGR02800 358 -----------------------ERVLTDTGL---DESPSF-APNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNG 409 (417)
T ss_pred -----------------------eEEccCCCC---CCCceE-CCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCC
Confidence 111111111 223456 99999888776653 4555554 4555555554445
Q ss_pred eeeEEee
Q 009266 387 VVNCIEP 393 (538)
Q Consensus 387 ~v~~~~~ 393 (538)
.+..++|
T Consensus 410 ~~~~~~w 416 (417)
T TIGR02800 410 DVREPAW 416 (417)
T ss_pred CcCCCCC
Confidence 5555555
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.8e-12 Score=121.56 Aligned_cols=235 Identities=13% Similarity=0.110 Sum_probs=143.4
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC---CcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
.|.+++...... ..+ ..+...+.+.+|+| +|+.|+..+.. ..|.+|++.+++......+ .......+|+|
T Consensus 199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCc-eEe-ecCCCcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECC
Confidence 677778655443 333 45677899999999 99998876542 3588889887665433222 23345789999
Q ss_pred CCCcEEEEEcCCCc--EEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCc
Q 009266 161 GSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKY 236 (538)
Q Consensus 161 ~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~ 236 (538)
++..++++...++. |++|++.+++...... +.......+|+|++..++++....+ .|+++++.++
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-----------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALTRITR-----------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-----------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99666666666665 7778888776443222 1113466889998444444444444 4555666655
Q ss_pred cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC--C--eEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
+.... . .. .......+|+|+|++|+..+. + .|.++++.++..
T Consensus 341 ~~~~L-------------t-~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~------------------ 386 (448)
T PRK04792 341 KVSRL-------------T-FE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM------------------ 386 (448)
T ss_pred CEEEE-------------e-cC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe------------------
Confidence 42110 0 01 112335689999998877652 3 466667655321
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC-C--eEEEeeccCcceeEEeecCcceee
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-G--RIFIWKKKGGELIRVIEADRHVVN 389 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d-g--~i~iwd~~~~~~~~~~~~h~~~v~ 389 (538)
..+..... .....| +|+|++|+..+.. + .|++++. +|+....+..+.+.+.
T Consensus 387 ---------------------~~lt~~~~---d~~ps~-spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~ 440 (448)
T PRK04792 387 ---------------------QVLTSTRL---DESPSV-APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVK 440 (448)
T ss_pred ---------------------EEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence 11111110 112356 9999988765543 3 4777786 6777777776667788
Q ss_pred EEeecCC
Q 009266 390 CIEPHPH 396 (538)
Q Consensus 390 ~~~~s~~ 396 (538)
..+|+|-
T Consensus 441 ~p~Wsp~ 447 (448)
T PRK04792 441 SPAWSPF 447 (448)
T ss_pred CCccCCC
Confidence 8899873
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=2.3e-10 Score=103.34 Aligned_cols=291 Identities=12% Similarity=0.108 Sum_probs=168.0
Q ss_pred CCceEEeeccC-----CceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC--
Q 009266 9 NNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-- 81 (538)
Q Consensus 9 ~~~~l~t~~~d-----~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~-- 81 (538)
++++++..... ++|.|.|..+++.+. .+..-..+- .+ +||+|+.|..+..
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g---------------------~i~~G~~P~-~~-~spDg~~lyva~~~~ 67 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLG---------------------MTDGGFLPN-PV-VASDGSFFAHASTVY 67 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEE---------------------EEEccCCCc-ee-ECCCCCEEEEEeccc
Confidence 34455444433 899999999888752 222222221 24 9999998877655
Q ss_pred --------CCeEEEEECCCCceeeeeccCC------CCCeEEEEEeecCCCceEEEEe-C-CCcEEEeecccCceeeeee
Q 009266 82 --------DRRVILWDWKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCA-A-DGQVRHAQILERGGVETKL 145 (538)
Q Consensus 82 --------d~~i~iw~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~~l~s~~-~-dg~v~vwd~~~~~~~~~~~ 145 (538)
+..|.+||+.+++.+..+..+. ......++++| +|++|++.. . +..|.+.|+.+++.+....
T Consensus 68 ~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 68 SRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred cccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 6789999999999988874321 12334788999 999999876 3 6899999999988776533
Q ss_pred ccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC
Q 009266 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (538)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 225 (538)
.. ....-...++.. + .+.+.||......+............-...........+ .|.+.++.++++...
T Consensus 146 vp---~~~~vy~t~e~~-~--~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e- 214 (352)
T TIGR02658 146 VP---DCYHIFPTANDT-F--FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT- 214 (352)
T ss_pred CC---CCcEEEEecCCc-c--EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-
Confidence 32 111122222222 1 222344444443333221111111000000000000111 445523667766666
Q ss_pred CeEEEEEcCCccccCCCCCCCCCcccCCCCc-cCCCccceEEEEEcCCCCEEEEEc-----------CCeEEEeeccCCC
Q 009266 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQDMGL 293 (538)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~-----------~~~i~~~d~~~~~ 293 (538)
|+|.+.|+......... +...+..... ..-....+.-++++|+++.|.+.. .+.|.++|..+.
T Consensus 215 G~V~~id~~~~~~~~~~----~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~- 289 (352)
T TIGR02658 215 GKIFQIDLSSGDAKFLP----AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG- 289 (352)
T ss_pred CeEEEEecCCCcceecc----eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-
Confidence 99999997554321110 0000000000 011233444599999998777632 146889998773
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc-EEEEec-cCCeEEEee
Q 009266 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRIFIWK 371 (538)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~~gs-~dg~i~iwd 371 (538)
+.+..+..-. .+..+++ +|+++ +|++.. .++.|.++|
T Consensus 290 -------------------------------------kvi~~i~vG~---~~~~iav-S~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 290 -------------------------------------KRLRKIELGH---EIDSINV-SQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred -------------------------------------eEEEEEeCCC---ceeeEEE-CCCCCeEEEEeCCCCCcEEEEE
Confidence 3334333222 2789998 99999 777665 578899999
Q ss_pred ccCcceeEEe
Q 009266 372 KKGGELIRVI 381 (538)
Q Consensus 372 ~~~~~~~~~~ 381 (538)
+.+++.++++
T Consensus 329 ~~t~k~i~~i 338 (352)
T TIGR02658 329 AETGKELSSV 338 (352)
T ss_pred CcCCeEEeee
Confidence 9999999887
No 256
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.8e-11 Score=109.68 Aligned_cols=305 Identities=12% Similarity=0.113 Sum_probs=188.6
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC-----------CCcEEE
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----------DGQVRH 132 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-----------dg~v~v 132 (538)
=+-+.|||-|.||+|--.-| |.+|--.+-..++++ .|. .|.-+.||| +.+||+|-+. ...++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp-~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHP-GVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCC-CceeeecCC--ccceEEEecCCccccCcccCCCceEEE
Confidence 46789999999999998866 999976666666666 354 588899999 9999998764 257999
Q ss_pred eecccCceeeeeeccccCCCc-EEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 133 AQILERGGVETKLLGKHQGRA-HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
||+.+|..............+ .-+.||.++ +++|.-.. ..|.||...+..++..-.. ....|....|
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Ksl----------ki~gIr~Fsw 354 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSL----------KISGIRDFSW 354 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeeccccc----------CCccccCccc
Confidence 999999876653222122222 345789988 56666555 5799998765333222111 2226888999
Q ss_pred cCCCCcEEEEEeC-----CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-----
Q 009266 212 DPRNANLFAVAGS-----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----- 281 (538)
Q Consensus 212 ~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----- 281 (538)
+|. +++||--.. -..+.|..+.+++.++. ..-++-.=..|-|..+|.+|+.--+
T Consensus 355 sP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt---------------~nlfnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 355 SPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRT---------------KNLFNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred CCC-cceEEEEcccccCCcceEEEEecCccceeee---------------ccceeeeccEEEeccCCcEEEEEEEeeccc
Confidence 996 677764332 12445555555442221 1111122234677888988886432
Q ss_pred ---C---eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC
Q 009266 282 ---E---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (538)
Q Consensus 282 ---~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 355 (538)
+ .+.|+.++.. ..++..+.- .. .|...+| -|.|
T Consensus 419 ~~~g~f~n~eIfrireK-------------------------------------dIpve~vel-ke--~vi~FaW-EP~g 457 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREK-------------------------------------DIPVEVVEL-KE--SVIAFAW-EPHG 457 (698)
T ss_pred cccceEeeEEEEEeecc-------------------------------------CCCceeeec-ch--heeeeee-ccCC
Confidence 1 2445555432 111111211 11 3788888 9999
Q ss_pred cEEEEecc---CCeEEEeeccC----cceeEEeecCcceeeEEeecCCCCeEEEe---ecCCceEEecCCCC--cccccC
Q 009266 356 EYVVSGSD---CGRIFIWKKKG----GELIRVIEADRHVVNCIEPHPHSTVLASS---GIESDIKILTPNAA--DRATLP 423 (538)
Q Consensus 356 ~~l~~gs~---dg~i~iwd~~~----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---~~dg~v~vw~~~~~--~~~~~~ 423 (538)
..+++-+. ..++.+|.+++ .+++..+.. ...+.+.|+|.|++++.+ |..|.+.++|+.-. +....+
T Consensus 458 dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~ 535 (698)
T KOG2314|consen 458 DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP 535 (698)
T ss_pred CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc
Confidence 87775443 36788998863 234445543 456889999999988766 45789999998742 333333
Q ss_pred ccceeeee-cccCc-eeeeccCCC
Q 009266 424 TNIEQVLI-PDHIR-WFALGDDDD 445 (538)
Q Consensus 424 ~~~~~~~~-~~~~~-~l~s~~~d~ 445 (538)
.|...... -.|.| +++++++..
T Consensus 536 eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 536 EHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccccccceECCCCCEEEEeeehh
Confidence 44332211 12666 666666554
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.4e-12 Score=117.70 Aligned_cols=278 Identities=10% Similarity=0.119 Sum_probs=188.3
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--------------eeeeccCCCCCeEEEEEeecCCCceEEEEe
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--------------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~--------------~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
......|++|+....++|+|+.||.+++-.+.+... +.+.+.+|...|.-+.|+. +.+.|-+..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--~~QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--NNQKLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--ccccccccC
Confidence 456789999999999999999999999998765321 1223579999999999998 888999999
Q ss_pred CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeee-eeeecccCCCCCcceee
Q 009266 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~ 204 (538)
.+|.|.||-+-.+.......-....+.|.+++|+.+| ..++....||.|.+=.+...+.-. .++. .
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg------------~ 157 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKG------------Q 157 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcch------------h
Confidence 9999999999888776554445567789999999999 577888888888876665443221 1111 1
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCC---ccCCCccceEEEEEc--------CCC
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN---LIGDEQVGITGLAFS--------DQS 273 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s--------~~~ 273 (538)
....+.|+++ ...++.+-.+|.+.+||....-. .. ....|... ........|..+.|. |+.
T Consensus 158 ~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~-~K------l~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 158 LLAHVLWSED-LEQALFKKANGETHLYDNQGNFE-RK------LEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred eccceeeccc-HHHHHhhhcCCcEEEecccccHH-Hh------hhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 3457889998 57777788899999999764311 00 00001000 001111224444443 355
Q ss_pred CEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEec
Q 009266 274 ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (538)
Q Consensus 274 ~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s 352 (538)
..|+++. .|.+.+..-.+. ..+..+... ..+....| +
T Consensus 230 P~lavcy~nGr~QiMR~eND--------------------------------------~~Pvv~dtg---m~~vgakW-n 267 (1189)
T KOG2041|consen 230 PRLAVCYANGRMQIMRSEND--------------------------------------PEPVVVDTG---MKIVGAKW-N 267 (1189)
T ss_pred CEEEEEEcCceehhhhhcCC--------------------------------------CCCeEEecc---cEeeccee-c
Confidence 5666655 556666543331 111111111 23778888 9
Q ss_pred CCCcEEEEeccC---------CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEe
Q 009266 353 PKCEYVVSGSDC---------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 353 ~~~~~l~~gs~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
++|.+||+++.+ +.|.+|. .-|+.+.+++.....|++++|-..|-.+|.+
T Consensus 268 h~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 268 HNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred CCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 999999988754 3566666 3678889999888899999997776555543
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=1.6e-11 Score=118.65 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=132.5
Q ss_pred CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC---CcEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
..|.+++...... . .+..+...+...+|+|++. .|+.+... ..|++|++.+++....... ..
T Consensus 170 ~~l~~~d~~g~~~-~--~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-----------~~ 234 (417)
T TIGR02800 170 YELQVADYDGANP-Q--TITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVASF-----------PG 234 (417)
T ss_pred ceEEEEcCCCCCC-E--EeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEeecC-----------CC
Confidence 3577777653332 2 2444666788999999995 55554432 4799999998765433221 12
Q ss_pred eeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-
Q 009266 205 NLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND- 281 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~- 281 (538)
.+.+++|+|++..++++.+.++ .|++|++.+++.... ..+........|+|+|+.|+..++
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l----------------~~~~~~~~~~~~s~dg~~l~~~s~~ 298 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL----------------TNGPGIDTEPSWSPDGKSIAFTSDR 298 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC----------------CCCCCCCCCEEECCCCCEEEEEECC
Confidence 3566899998444445555554 588888876542111 111223345689999998876652
Q ss_pred -C--eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEE
Q 009266 282 -E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (538)
Q Consensus 282 -~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l 358 (538)
+ .|+++++.++. ...+..+... +..+.| +|+|++|
T Consensus 299 ~g~~~iy~~d~~~~~---------------------------------------~~~l~~~~~~--~~~~~~-spdg~~i 336 (417)
T TIGR02800 299 GGSPQIYMMDADGGE---------------------------------------VRRLTFRGGY--NASPSW-SPDGDLI 336 (417)
T ss_pred CCCceEEEEECCCCC---------------------------------------EEEeecCCCC--ccCeEE-CCCCCEE
Confidence 2 57777765421 1122222222 456677 9999999
Q ss_pred EEeccCC---eEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCC---ceEEecCCCC
Q 009266 359 VSGSDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNAA 417 (538)
Q Consensus 359 ~~gs~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~v~vw~~~~~ 417 (538)
+.++.++ .|.+|++.++.. ..+..+ ......+|+|++++|+.++.++ .+++.+....
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 9887765 789999887544 333322 2345678999999888777654 3455554443
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.5e-11 Score=118.92 Aligned_cols=235 Identities=9% Similarity=0.085 Sum_probs=145.3
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC---CcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
.|.+++...+.. ..+ ..+...+...+|+| +|+.|+..+.. ..|.+|++.++..... ......+...+|+|
T Consensus 180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~l---~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTL-LQSREPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQI---TNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eEE-ecCCCceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEEc---cCCCCCcCCeEECC
Confidence 477778765443 444 45677899999999 99999876643 4688999987765432 22334455789999
Q ss_pred CCCcEEEEEcCCC--cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCc
Q 009266 161 GSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKY 236 (538)
Q Consensus 161 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~ 236 (538)
+|..++++...++ .|++|++.++....... .........|+|++..++++....| .|+++++.++
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-----------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN-----------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEEccc-----------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9965555665555 58888998876543221 1113456789998544444444444 4666777665
Q ss_pred cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC--C--eEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
+.... . .. ........|+|+|++|+.... + .|.+|++.++..
T Consensus 322 ~~~~l-------------t-~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------------ 367 (430)
T PRK00178 322 RAERV-------------T-FV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------------ 367 (430)
T ss_pred CEEEe-------------e-cC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------------
Confidence 42110 0 00 112345689999999887652 2 478888776421
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC---CeEEEeeccCcceeEEeecCcceee
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVN 389 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d---g~i~iwd~~~~~~~~~~~~h~~~v~ 389 (538)
+.+... .. .....| +|+|++|+..+.. ..|+++++. +.....+..+.+.+.
T Consensus 368 ---------------------~~lt~~-~~--~~~p~~-spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 368 ---------------------RILTDT-SL--DESPSV-APNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR 421 (430)
T ss_pred ---------------------EEccCC-CC--CCCceE-CCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence 111111 11 123456 9999998876544 357777774 444555655566778
Q ss_pred EEeecCC
Q 009266 390 CIEPHPH 396 (538)
Q Consensus 390 ~~~~s~~ 396 (538)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 8888873
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.9e-11 Score=116.90 Aligned_cols=199 Identities=11% Similarity=0.109 Sum_probs=127.4
Q ss_pred EEcCCcCcEEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEE-EeCCC--c
Q 009266 56 KLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADG--Q 129 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~g~~l~t~~~d---~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s-~~~dg--~ 129 (538)
.+..+...+...+|+|+|+.|+..+.. ..|.+|++.+++... + ....+.+...+|+| +|+.|+. ...+| .
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~Sp--DG~~la~~~~~~g~~~ 268 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSP--DGSKLAFVLSKDGNPE 268 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECC--CCCEEEEEEccCCCce
Confidence 345577789999999999999876543 469999998886533 2 23334556789999 9988874 44444 5
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC--cEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
|.+|++.++.... +..+........|+|++..++++....+ .|+++++.+++...... .. ....
T Consensus 269 Iy~~d~~~~~~~~---lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~----------~~~~ 334 (430)
T PRK00178 269 IYVMDLASRQLSR---VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VG----------NYNA 334 (430)
T ss_pred EEEEECCCCCeEE---cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CC----------CCcc
Confidence 7888888765432 4445556677899999965555554444 57777887776433221 10 1234
Q ss_pred EEEEcCCCCcEEEEEeC-CC--eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CC
Q 009266 208 AIAIDPRNANLFAVAGS-DE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DE 282 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~ 282 (538)
...|+|+ ++.|+..+. ++ .|.+|++.+++.... .. ........|+|+|++|+..+ .+
T Consensus 335 ~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~~l---------------t~--~~~~~~p~~spdg~~i~~~~~~~g 396 (430)
T PRK00178 335 RPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVRIL---------------TD--TSLDESPSVAPNGTMLIYATRQQG 396 (430)
T ss_pred ceEECCC-CCEEEEEEccCCceEEEEEECCCCCEEEc---------------cC--CCCCCCceECCCCCEEEEEEecCC
Confidence 5689998 556655543 33 578888877642110 00 01112458999999887765 23
Q ss_pred --eEEEeecc
Q 009266 283 --FIYLFTQD 290 (538)
Q Consensus 283 --~i~~~d~~ 290 (538)
.|+++++.
T Consensus 397 ~~~l~~~~~~ 406 (430)
T PRK00178 397 RGVLMLVSIN 406 (430)
T ss_pred ceEEEEEECC
Confidence 46666664
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=3.1e-12 Score=116.93 Aligned_cols=210 Identities=15% Similarity=0.161 Sum_probs=155.4
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccc-eEEeeeeeEEcCCcCcEEEEEE----cCCCCEEEEec
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDL-VLRLGIYAKLDKHRGCVNTVSF----NTDGDILISGS 80 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~----s~~g~~l~t~~ 80 (538)
+||...++|....+|.+|||+..++++. +.|.|.+..+... ...+.+.... -.....++.+ +.+-..||-|.
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~-~e~~p~~~~s~t~~~~~w~L~~~~--s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQ-QEFAPIASLSGTCTYTKWGLSADY--SPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceee-eeeccchhccCcceeEEEEEEecc--chHHHHhHHHHhhccCCceEEEeec
Confidence 4677889999999999999999988764 4455544332222 1222211111 1111222222 12345778888
Q ss_pred CCCeEEEEECCCCceeeeec-cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 81 DDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
..|.|.+|++..|+...++. ..|.+.|.++.++. +-..|.+++.++.+.+|+......++. ....+..+.+++++
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~--~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRI--WKEQKPLVSSLCIS 153 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeee--eccCCCccceEEEc
Confidence 89999999999999877775 57999999999998 889999999999999999988777665 77778889999999
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC-----CCcEEEEEeCCCeEEEEEcC
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR-----NANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~v~iwd~~ 234 (538)
|++ .+|++++ +.|++|++++++.+..|..| .++|++++|--. +..+|.+......+.+|-+.
T Consensus 154 ~D~-~~l~~as--~~ik~~~~~~kevv~~ftgh----------~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 154 PDG-KILLTAS--RQIKVLDIETKEVVITFTGH----------GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCC-CEEEecc--ceEEEEEccCceEEEEecCC----------CcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 998 6888887 58999999999999999864 447888888764 33455555666777888776
Q ss_pred C
Q 009266 235 K 235 (538)
Q Consensus 235 ~ 235 (538)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.47 E-value=1e-10 Score=111.04 Aligned_cols=307 Identities=15% Similarity=0.112 Sum_probs=178.3
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
+.++++++.++.|..+|..+|+.+-+ ..+. .....+.+. ++..++.++.++.|..+|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~-------------------~~~~--~~~~~~p~v--~~~~v~v~~~~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWR-------------------VDLD--ERLSGGVGA--DGGLVFVGTEKGEVIALD 121 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeee-------------------ecCC--CCcccceEE--cCCEEEEEcCCCEEEEEE
Confidence 45678888889999999888887521 0111 111111222 466788888899999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC---CcEEEEEcCCCCcEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPHVF 166 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l 166 (538)
..+|+.+.+... ...+.+.... .+..++.++.++.|..||..+++.+.......... ...+..+. + ..+
T Consensus 122 ~~tG~~~W~~~~--~~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~--~~v 193 (377)
T TIGR03300 122 AEDGKELWRAKL--SSEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D--GGV 193 (377)
T ss_pred CCCCcEeeeecc--CceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C--CEE
Confidence 999998776532 2223221111 34567777889999999999888765532221110 00111122 2 256
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee-EEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
+.+..++.+..+|+++++.+...................+ .+..+. +..+++++.+|.++.|+..+++.......
T Consensus 194 ~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~- 269 (377)
T TIGR03300 194 LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDA- 269 (377)
T ss_pred EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence 7788889999999999987655432111000000000000 111122 24677788899999999988764322110
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
......+. .++++++...++.++.++..++.......
T Consensus 270 ----------------~~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~-------------------------- 306 (377)
T TIGR03300 270 ----------------SSYQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKND-------------------------- 306 (377)
T ss_pred ----------------CCccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccc--------------------------
Confidence 00111122 13444444447799999988764322110
Q ss_pred CCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceee-EEeecCCCCeEEEee
Q 009266 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTVLASSG 404 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~ 404 (538)
.+.... ..+... .+.+|++++.+|.|++++..+++.+.+++.+...+. +.++. + ..|+.++
T Consensus 307 ---------~~~~~~----~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~ 368 (377)
T TIGR03300 307 ---------ELKYRQ----LTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQT 368 (377)
T ss_pred ---------cccCCc----cccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEe
Confidence 011100 111111 356888899999999999999999998886664433 22332 3 3588888
Q ss_pred cCCceEEe
Q 009266 405 IESDIKIL 412 (538)
Q Consensus 405 ~dg~v~vw 412 (538)
.||.|+.|
T Consensus 369 ~dG~l~~~ 376 (377)
T TIGR03300 369 RDGDLYAF 376 (377)
T ss_pred CCceEEEe
Confidence 89999876
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=5.5e-11 Score=114.31 Aligned_cols=199 Identities=13% Similarity=0.153 Sum_probs=121.7
Q ss_pred EEcCCcCcEEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEE-EeCCCc--
Q 009266 56 KLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADGQ-- 129 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~g~~l~t~~~d---~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s-~~~dg~-- 129 (538)
.+..+...+.+.+|+|+|+.|+..+.. ..|.+|++.+++... + ....+.....+|+| +|+.|+. .+.+|.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSP--DG~~La~~~~~~g~~~ 287 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSP--DGKKLALVLSKDGQPE 287 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECC--CCCEEEEEEeCCCCeE
Confidence 344567788999999999999876542 368899998876522 2 22233445789999 9998865 455664
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC--cEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
|.++++.++.... +..+.......+|+|++..++++....+ .|.++++.+++.... .... ....
T Consensus 288 Iy~~dl~tg~~~~---lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g----------~~~~ 353 (448)
T PRK04792 288 IYVVDIATKALTR---ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEG----------EQNL 353 (448)
T ss_pred EEEEECCCCCeEE---CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCC----------CCCc
Confidence 7777877665432 4445556678899999965555554444 466667777664332 2111 1223
Q ss_pred EEEEcCCCCcEEEEE-eCCC--eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CC
Q 009266 208 AIAIDPRNANLFAVA-GSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DE 282 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~-~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~ 282 (538)
..+|+|++ ++|+.. ...+ .|.++++.+++... +... .......|+|+|++|+... .+
T Consensus 354 ~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~~---------------lt~~--~~d~~ps~spdG~~I~~~~~~~g 415 (448)
T PRK04792 354 GGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQV---------------LTST--RLDESPSVAPNGTMVIYSTTYQG 415 (448)
T ss_pred CeeECCCC-CEEEEEEecCCceEEEEEECCCCCeEE---------------ccCC--CCCCCceECCCCCEEEEEEecCC
Confidence 46899984 555544 4444 45556766654210 0000 0112347999999887655 23
Q ss_pred --eEEEeecc
Q 009266 283 --FIYLFTQD 290 (538)
Q Consensus 283 --~i~~~d~~ 290 (538)
.+++++..
T Consensus 416 ~~~l~~~~~~ 425 (448)
T PRK04792 416 KQVLAAVSID 425 (448)
T ss_pred ceEEEEEECC
Confidence 36677654
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.44 E-value=4.4e-12 Score=106.56 Aligned_cols=270 Identities=14% Similarity=0.201 Sum_probs=170.5
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeee---ccCCC------------CCeEEEEEeecCCCceEEE
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSF---HSGHN------------DNVFQAKIMPFTDDRSIVT 123 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~-~~~~~---~~~~~------------~~v~~l~~~~~~~~~~l~s 123 (538)
....|+++.|...|.||+||...|.|.+|.-.... +...+ .++|. ..|..|.|...+.-..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999754332 11111 13343 3688888886333456777
Q ss_pred EeCCCcEEEeecccCcee----------------------------------------eee-eccccCCCcEEEEEcCCC
Q 009266 124 CAADGQVRHAQILERGGV----------------------------------------ETK-LLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 124 ~~~dg~v~vwd~~~~~~~----------------------------------------~~~-~~~~~~~~v~~~~~~~~~ 162 (538)
.+.+.+|++|.+...... +.+ ....|+..|.++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 788999999988543100 000 113577788999999887
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
..+++ +.+-.|.+|++.-......+.-..+ ..-..-..-|++..|+|...+++.-.+..|.|++-|+|...+-...
T Consensus 185 -et~lS-aDdLrINLWnl~i~D~sFnIVDiKP--~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 185 -ETLLS-ADDLRINLWNLEIIDGSFNIVDIKP--HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred -heeee-ccceeeeeccccccCCceEEEeccC--ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 45454 4567899999875432222211111 0000012357899999987788888899999999999965431110
Q ss_pred --CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 243 --DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 243 --~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
.+...... .-...+..-...|..+.|+++|+++++-..-++++||++..+.
T Consensus 261 ~klfe~~~D~-v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~-------------------------- 313 (460)
T COG5170 261 KKLFELTIDG-VDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKN-------------------------- 313 (460)
T ss_pred hhhhhhccCc-ccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccC--------------------------
Confidence 00000000 0011112224578889999999999999888999999987532
Q ss_pred CCCCCCCCcccCCceeecccc-------------ceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 321 SPSTANTDVRIAPQVYKGHRN-------------CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
+++++.-|.. -..-..+.| |-+.+.+.+|+..+..-+|-+
T Consensus 314 -----------pikTi~~h~~l~~~l~d~YEnDaifdkFeisf-Sgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 314 -----------PIKTIPMHCDLMDELNDVYENDAIFDKFEISF-SGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred -----------CceeechHHHHHHHHHhhhhccceeeeEEEEe-cCCcccccccccccceeeecc
Confidence 2222222210 001235666 888889999998888777764
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=1.1e-11 Score=103.48 Aligned_cols=206 Identities=12% Similarity=0.009 Sum_probs=141.7
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceee-eeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 142 (538)
-.++.|++.+..++++-.+|.+.+-+........ +..++|.-+++...|+.. +.+++++|+.|+.+..||++.++.-.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCccee
Confidence 4578889989889999889998855544443322 244899999999999873 56789999999999999998444322
Q ss_pred eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC-CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
-...+.|...|.+|.-+|..+.+++||+.|-.|++||.|.. +++..-. ..+.|..+.++|.....++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-----------v~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-----------VGGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-----------cccceEEEEecchhhhHHHH
Confidence 22345688999999999988899999999999999999854 4433222 23479999999974444555
Q ss_pred EeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEE-EeeccC
Q 009266 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIY-LFTQDM 291 (538)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~-~~d~~~ 291 (538)
++.-.-.+|-+.......-. ........|.+-+..-.|.....+||+++ +..++ +|-.-+
T Consensus 272 ~CMh~G~ki~~~~~~~~e~~----------~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 272 ACMHNGAKILDSSDKVLEFQ----------IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred HHHhcCceEEEecccccchh----------eeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 56666678888776542200 11222333444455555644446788876 44544 775544
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.43 E-value=2.1e-10 Score=103.25 Aligned_cols=282 Identities=17% Similarity=0.134 Sum_probs=185.4
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC-----------
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG----------- 128 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg----------- 128 (538)
-.-++..++|||.|.+|++....+ |.+|.-..+..+.++ ....|..+.|+| .+++|++-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~---~~~~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF---RHPDVKYLDFSP--NEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeee---ecCCceecccCc--ccceeeeeccCCccChhhccCCc
Confidence 456789999999999999987764 999998777655555 234799999999 999999976543
Q ss_pred ----cEEEeecccCceeeeeeccccCCCcE-EEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 129 ----QVRHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 129 ----~v~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
.+.+||+.++..+............. -+.|+-+. .+++-. ....++|+++ ++... ....+.. ..
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~l-------r~ 173 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIE-EHPFKNL-------RP 173 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccc-cCchhhc-------cc
Confidence 49999999988776633333332244 56777776 344333 3356999997 44332 1111111 12
Q ss_pred eeeEEEEEcCC-CCcEEEE-----EeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEE
Q 009266 204 VNLNAIAIDPR-NANLFAV-----AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (538)
Q Consensus 204 ~~v~~~~~~~~-~~~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 277 (538)
..|....|+|. ++..|+. .+..+.++||.+..++.+.+ ..+. ...-..+.|.+.|++|+
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t------------k~lf---k~~~~qLkW~~~g~~ll 238 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT------------KNLF---KVSGVQLKWQVLGKYLL 238 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee------------eeeE---eecccEEEEecCCceEE
Confidence 35888889986 2223333 45678899999886543222 1111 12234578899998776
Q ss_pred EEc------------CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceee
Q 009266 278 SYN------------DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (538)
Q Consensus 278 ~~~------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (538)
+-. ...++|+++... .+.......++ |
T Consensus 239 ~l~~t~~ksnKsyfgesnLyl~~~~e~---------------------------------------~i~V~~~~~~p--V 277 (561)
T COG5354 239 VLVMTHTKSNKSYFGESNLYLLRITER---------------------------------------SIPVEKDLKDP--V 277 (561)
T ss_pred EEEEEeeecccceeccceEEEEeeccc---------------------------------------ccceecccccc--c
Confidence 431 134777776531 11112133444 8
Q ss_pred eEEEEecCCCcEEEEe--ccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecC---CceEEecCCCCc
Q 009266 346 KGVNFFGPKCEYVVSG--SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAAD 418 (538)
Q Consensus 346 ~~v~~~s~~~~~l~~g--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~v~vw~~~~~~ 418 (538)
...+| .|.++.+++. -....+.++++... +... ...+.-+.+.|+|.+++++.++-+ |.|-+|+.....
T Consensus 278 hdf~W-~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 278 HDFTW-EPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred eeeee-cccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCce
Confidence 99999 9998877654 46788999998654 3333 345556788999999999887764 789999987653
No 267
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=133.60 Aligned_cols=186 Identities=18% Similarity=0.229 Sum_probs=146.9
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
+|...+-+||+.||.|++|....++.+- .....|. ..|+.++|+.+|..+..+..||.+.
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~-------------------~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVV-------------------CFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEE-------------------EeeccCc-chhhhhhhcccCCceeeeccCCcee
Confidence 5677788999999999999998777641 1122233 8899999999999999999999999
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC---CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
+|.+. .++.... +.|.......+|.. ..+++++. ++.+.+||..-....... ...|.+.++++++.|..
T Consensus 2277 l~q~~-pk~~~s~-qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~- 2348 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSW-QCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKH- 2348 (2439)
T ss_pred ecccC-Ccceecc-ccCCccccceeeee----hhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcc-
Confidence 99977 4444444 78999999999974 67777654 689999997543322211 26899999999999998
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
++|++|+.+|.|++||++..+.+..++. +. . ..+|++|+..|.++||++....+...
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~-------------------~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA-------------------LD-T-REYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh-------------------hh-h-hheeeccCcccceEEEEccccchhhc
Confidence 7999999999999999999887766551 33 2 57999999999999999998765544
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=8.4e-11 Score=112.05 Aligned_cols=228 Identities=14% Similarity=0.117 Sum_probs=131.8
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc--EEEEEcCCC--cEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH--VFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
.|.+.+........ +......+..-+|+|+|.+ ++++...++ .|.+.++.+++........ .
T Consensus 166 ~l~~~d~dG~~~~~---lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-----------g 231 (428)
T PRK01029 166 ELWSVDYDGQNLRP---LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-----------G 231 (428)
T ss_pred eEEEEcCCCCCceE---cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-----------C
Confidence 56666665443322 4444556677899999964 333444443 5888888877654433211 1
Q ss_pred eeEEEEEcCCCCcEEEE-EeCCC----eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE
Q 009266 205 NLNAIAIDPRNANLFAV-AGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~-~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (538)
.....+|+|+ |+.|+. ....| .+.+|++..+.. +. +..+...........+|+|+|+.|+..
T Consensus 232 ~~~~p~wSPD-G~~Laf~s~~~g~~di~~~~~~~~~g~~------g~------~~~lt~~~~~~~~~p~wSPDG~~Laf~ 298 (428)
T PRK01029 232 NQLMPTFSPR-KKLLAFISDRYGNPDLFIQSFSLETGAI------GK------PRRLLNEAFGTQGNPSFSPDGTRLVFV 298 (428)
T ss_pred CccceEECCC-CCEEEEEECCCCCcceeEEEeecccCCC------Cc------ceEeecCCCCCcCCeEECCCCCEEEEE
Confidence 3456799998 555554 43333 344466654310 00 111111112234567999999988876
Q ss_pred c--CCe--EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC
Q 009266 280 N--DEF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (538)
Q Consensus 280 ~--~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 355 (538)
+ ++. |+++++... ......+..+... +....| ||+|
T Consensus 299 s~~~g~~~ly~~~~~~~-------------------------------------g~~~~~lt~~~~~--~~~p~w-SPDG 338 (428)
T PRK01029 299 SNKDGRPRIYIMQIDPE-------------------------------------GQSPRLLTKKYRN--SSCPAW-SPDG 338 (428)
T ss_pred ECCCCCceEEEEECccc-------------------------------------ccceEEeccCCCC--ccceeE-CCCC
Confidence 5 343 444444321 0111223222222 456777 9999
Q ss_pred cEEEEeccC---CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeec---CCceEEecCCCCcccccCc
Q 009266 356 EYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---ESDIKILTPNAADRATLPT 424 (538)
Q Consensus 356 ~~l~~gs~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~v~vw~~~~~~~~~~~~ 424 (538)
++|+..+.. ..|++|++.+++... +......+....|+|+|++|+.... ...|++|++.+++...+..
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 998876543 479999998887643 3323345678999999997765432 3568888888776655443
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.2e-12 Score=118.32 Aligned_cols=176 Identities=20% Similarity=0.282 Sum_probs=129.1
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-------CceeeeeccCCCCCeEEEEEeecCCCceEEEEe
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
.++.+.||+..|..++--.+.+-+++++.|++|++|.+.. ..+..++ ..|+.+|..+.|.. +.++++++
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~--~lr~i~Sc- 802 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLA--DLRSIASC- 802 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeee--ccceeeec-
Confidence 3467889999999998877788899999999999999853 2244555 78999999999998 77777766
Q ss_pred CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCC-CCcEEEE-EcCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-SPHVFYT-CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
||.|.+||.--++.+....-....+.+..+...|+ ...++++ ++...+|+++|.+.......++.-.... ..
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~-----Pn 876 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG-----PN 876 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC-----Cc
Confidence 57899999866655432212222233444444443 2234444 4788999999999988776665432111 23
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcccc
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (538)
.-+++++..|. |+.++++-..|.|.+.|.++++..
T Consensus 877 a~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 877 ALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred hheeEEEeccC-cchhhHHhcCCcEEEEecCCCcee
Confidence 46789999997 799999999999999999999754
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=1.9e-12 Score=121.02 Aligned_cols=291 Identities=14% Similarity=0.171 Sum_probs=187.7
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec-cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
.+++.++..+|.|+-+|.++.-| +.+-++...-....++ .-..-.|-.+.|+|..--.+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788999999999999999877 4555665433323332 112235667788884444444444445566789986443
Q ss_pred e-eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeee-eeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 140 G-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 140 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
. .....+.+|+..|+.+.|+|+.+-++++++.|-.+..||+++..... .+... ......++|+-.+++
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w----------~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW----------RSAASQVKWNYKDPN 172 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc----------cccCceeeecccCcc
Confidence 2 22345889999999999999999999999999999999999875432 22111 114567888877565
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC--CCEEEEEcCCeEEEeeccCCCCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGP 295 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~i~~~d~~~~~~~ 295 (538)
.+| .+....|++||++.+. .+......|...|.++.|..- +..+-+..+++|+.|+.......
T Consensus 173 vla-sshg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 173 VLA-SSHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred hhh-hccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 555 4566789999999875 234445557788888888763 44555556889999998764221
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc--EEEE--e-------ccC
Q 009266 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVS--G-------SDC 364 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~--~l~~--g-------s~d 364 (538)
.. ++.. ... .|+.-+| -|-|. ++.- | --+
T Consensus 238 ~~------------------------------------~~vt-t~~--piw~~r~-~Pfg~g~~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 238 SK------------------------------------RTVT-TNF--PIWRGRY-LPFGEGYCIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred cc------------------------------------eecc-ccC--cceeccc-cccCceeEeccccCCeeeeecccc
Confidence 11 0000 001 1222233 33222 1111 1 112
Q ss_pred CeEEEeeccC-cceeEEeecCcceeeEEeecCCC--------C--eEEEeecCCceEEecCCCC
Q 009266 365 GRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHS--------T--VLASSGIESDIKILTPNAA 417 (538)
Q Consensus 365 g~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~--------~--~l~s~~~dg~v~vw~~~~~ 417 (538)
.....|+..+ .+++.+|.||...|..+.|-..+ + .|+|-+.|..+|+|-+...
T Consensus 278 n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 278 NSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred chhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 2233455444 36789999999988877775432 2 6999999999999988754
No 271
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.7e-10 Score=102.88 Aligned_cols=305 Identities=12% Similarity=0.163 Sum_probs=191.6
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe----------CCCcEE
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVR 131 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~----------~dg~v~ 131 (538)
...+..+++++|+++|.+.. ..++|++..++..+.+... . .++.+.|+| -+.+|.+-- ....++
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVEL--K-KTYDLLFSP--KGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEecc--c-eeeeeeecc--cccccccccccccccCCCCCCCcee
Confidence 44778899999999888764 6899999988875555522 2 799999999 888887631 124578
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
+|++.++..... +......-.++.|+++.. |++--..+.+++|++...+.....- +...|+.+.+
T Consensus 109 v~~vet~~~~s~--~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~kl-----------~~~~i~~f~l 173 (566)
T KOG2315|consen 109 VYNVETGVQRSQ--IQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQHKL-----------SVSGITMLSL 173 (566)
T ss_pred eeeeccceehhh--eehhhhcCcccccccchh--hhhhhhcceEEEEecCCccceeeee-----------eccceeeEEe
Confidence 999998433322 222222225889999873 4444445789999988743322111 3346888999
Q ss_pred cCCCC-cEEEE-----EeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE--EEEc--C
Q 009266 212 DPRNA-NLFAV-----AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL--VSYN--D 281 (538)
Q Consensus 212 ~~~~~-~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l--~~~~--~ 281 (538)
+|... ..+|+ .+.-+.|+||.......... + ..+.+. ...-..+.|++-|.-| ++.+ +
T Consensus 174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~------~---a~ksFF---kadkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP------V---ANKSFF---KADKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred cCCCCCceEEEEccCCCCCCcEEEEeccccccccch------h---hhcccc---ccceeEEEeccCCceEEEEEEEeec
Confidence 98522 34443 45567899999874321110 0 011111 2233457788877632 2221 1
Q ss_pred ---------CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEec
Q 009266 282 ---------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (538)
Q Consensus 282 ---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s 352 (538)
.+++++.+... .....+. ..+ .|+++.| +
T Consensus 242 ktn~SYYGEq~Lyll~t~g~--------------------------------------s~~V~L~-k~G--PVhdv~W-~ 279 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGE--------------------------------------SVSVPLL-KEG--PVHDVTW-S 279 (566)
T ss_pred CCCccccccceEEEEEecCc--------------------------------------eEEEecC-CCC--CceEEEE-C
Confidence 14777766521 1111111 123 3999999 9
Q ss_pred CCCcEEEE--eccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeec---CCceEEecCCCCcccccC-ccc
Q 009266 353 PKCEYVVS--GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---ESDIKILTPNAADRATLP-TNI 426 (538)
Q Consensus 353 ~~~~~l~~--gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~v~vw~~~~~~~~~~~-~~~ 426 (538)
|+++-+++ |-.-.++.||++ .+.++..+ ..++-+++-|+|.|++|+.+|- -|.|-|||+.+.++..-. ...
T Consensus 280 ~s~~EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~ 356 (566)
T KOG2315|consen 280 PSGREFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN 356 (566)
T ss_pred CCCCEEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC
Confidence 99976554 556688999997 45666555 3667799999999999988875 488999999986654333 333
Q ss_pred eeeeecccCc-eeeeccCC
Q 009266 427 EQVLIPDHIR-WFALGDDD 444 (538)
Q Consensus 427 ~~~~~~~~~~-~l~s~~~d 444 (538)
..+....|+| +++++...
T Consensus 357 tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred ceEEEEcCCCcEEEEEecc
Confidence 4444455788 66655544
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.42 E-value=3.4e-10 Score=107.49 Aligned_cols=307 Identities=11% Similarity=0.024 Sum_probs=178.9
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
+..|++++.++.|..+|..+|+.+.++. ........++ . ++..++.++.++.|..+|..+++.+....+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~--v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~ 136 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVG--A--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---E 136 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceE--E--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---e
Confidence 6688888889999999999999877652 2221111222 2 56788888899999999999888776533322 1
Q ss_pred cEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 009266 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 232 (538)
+.+.-... + ..++.++.++.|+.||.++++.+..+........ .. ...+..+. + ..++.+..+|.+..+|
T Consensus 137 ~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~----~~-~~~sp~~~-~--~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 137 VLSPPLVA-N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALT----LR-GSASPVIA-D--GGVLVGFAGGKLVALD 206 (377)
T ss_pred eecCCEEE-C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCcee----ec-CCCCCEEE-C--CEEEEECCCCEEEEEE
Confidence 21111111 2 3567777889999999999998777654321000 00 00111122 1 3667788889999999
Q ss_pred cCCccccCCCCCCCCCcccCCCCccCCCccce-EEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccc
Q 009266 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI-TGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (538)
+++++.........+......... ..+ ....+ .++.++++..++.++.|+..++.....
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~-----~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~-------------- 266 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERL-----VDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWK-------------- 266 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhh-----hccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEe--------------
Confidence 988875433221111000000000 000 01111 144455555578999999887532211
Q ss_pred cCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCc-ceeeE
Q 009266 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR-HVVNC 390 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~-~~v~~ 390 (538)
.. ... .... ...+..|++++.+|.|+.++..+++.+-...... ....+
T Consensus 267 ------------------------~~-~~~---~~~p---~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss 315 (377)
T TIGR03300 267 ------------------------RD-ASS---YQGP---AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA 315 (377)
T ss_pred ------------------------ec-cCC---ccCc---eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc
Confidence 11 000 1111 1245677788889999999999998775542211 11222
Q ss_pred EeecCCCCeEEEeecCCceEEecCCCCcccc-cCccceeeeec-c-cCceeeeccCCCCCcee
Q 009266 391 IEPHPHSTVLASSGIESDIKILTPNAADRAT-LPTNIEQVLIP-D-HIRWFALGDDDDGDYYF 450 (538)
Q Consensus 391 ~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~-~~~~~~~~~~~-~-~~~~l~s~~~d~~~~~~ 450 (538)
... .+..|++++.+|.|++|+..+++... +..+...+... . .++.|+.++.+|..|.|
T Consensus 316 p~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 316 PAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 222 35688899999999999998887643 22233233222 2 45567788888877655
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.42 E-value=9.7e-10 Score=98.10 Aligned_cols=212 Identities=14% Similarity=0.145 Sum_probs=134.1
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccC-CCCCcceeeeeEEEE-EcCCCCcEEEEEeCCCeEEEEEcCCcc
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
.+|+++++. ..|.|.+||..+.+..+.--..+.. .........+..-+. |++-+|.+++..+. |+..|.+...+-
T Consensus 276 sDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 276 SDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 345433433 3467999998876543321110111 000000111122222 44545778887765 555565544432
Q ss_pred ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CC-eEEEeeccCCCCCCCCCCCCccccccccccCCC
Q 009266 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (538)
.+.-++...|+-..+..+++-++.+. ++ .+-||+..++.
T Consensus 353 -----------------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---------------------- 393 (668)
T COG4946 353 -----------------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---------------------- 393 (668)
T ss_pred -----------------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----------------------
Confidence 12223456688888877777666666 55 89999988742
Q ss_pred CccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecC
Q 009266 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (538)
.+.+...-+. |.++.. +|+|++++++.....|.+.++.++.....-+...+-|+.+.|||
T Consensus 394 -----------------~kr~e~~lg~--I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ 453 (668)
T COG4946 394 -----------------VKRIEKDLGN--IEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP 453 (668)
T ss_pred -----------------EEEeeCCccc--eEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC
Confidence 2333333333 888998 99999999999999999999999987666566668899999999
Q ss_pred CCCeEEEeecCC----ceEEecCCCCcccccCccceeeeecc
Q 009266 396 HSTVLASSGIES----DIKILTPNAADRATLPTNIEQVLIPD 433 (538)
Q Consensus 396 ~~~~l~s~~~dg----~v~vw~~~~~~~~~~~~~~~~~~~~~ 433 (538)
++++||-+--+| .|+++++.+++...+....+--.+++
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPa 495 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPA 495 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcc
Confidence 999999876554 68999999887655444433333444
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.7e-11 Score=113.15 Aligned_cols=245 Identities=14% Similarity=0.113 Sum_probs=167.0
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+..+.+..++|+|+.||.++|..+.+...-.... +++ ....+...++|.||.+.|.-+.|+...+.|-|...+|
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-gla-----a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS-GLA-----AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCccccc-ccc-----cccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4456778899999999999999988654321111 111 1234566789999999999999999999999999999
Q ss_pred eEEEEECCCCceeeeec-cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 84 RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
.|.+|-+-.|....... ...++.|.+++|+. +|..++..-.||.|.|=.+..++ +.-+.+.+. ....+.|+++.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~--~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQ--LLAHVLWSEDL 168 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccce-ecchhcchh--eccceeecccH
Confidence 99999998887644432 34566799999999 99999999999999887765432 222223322 23478899998
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeeee-----eeecccCCCCCcceeeeeEEEEEc--------CCCCcEEEEEeCCCeEE
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATEL-----FTCRPIDDRRNYMTVVNLNAIAID--------PRNANLFAVAGSDEYTR 229 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~dg~v~ 229 (538)
..++.+-..|.+.+||....-..+. ........ . .+..|..+.|. |+ ...|+++...|.+.
T Consensus 169 -~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s--~--~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 169 -EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS--N--FPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQ 242 (1189)
T ss_pred -HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec--C--CCccccceeeccCccccCCCC-CCEEEEEEcCceeh
Confidence 5667777889999999764311110 11000000 0 11134555554 44 56888999999888
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (538)
|..-.+... |..+ .....+..+.|+++|.+|++++.
T Consensus 243 iMR~eND~~--------------Pvv~--dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 243 IMRSENDPE--------------PVVV--DTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred hhhhcCCCC--------------CeEE--ecccEeecceecCCCcEEEEccC
Confidence 765544321 1111 12357889999999999999874
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.2e-10 Score=106.77 Aligned_cols=193 Identities=15% Similarity=0.168 Sum_probs=151.2
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeeccC--CCCCeEEEEEe------e------------cCCCceEEEEeCCCc
Q 009266 70 NTDGDILISGSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIM------P------------FTDDRSIVTCAADGQ 129 (538)
Q Consensus 70 s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~--~~~~v~~l~~~------~------------~~~~~~l~s~~~dg~ 129 (538)
.|...++|....+|.+|||+..+++....+... -.+..++..|. | ..+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 355789999999999999999988876655211 12334444443 2 124457888889999
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
|.++++..++......-..|.+.|.++.++.+- ..|.+++.|+.+..|+....+.+..+.+.+. .+.++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~----------~~~sl 150 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKP----------LVSSL 150 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCC----------ccceE
Confidence 999999988887776667899999999999887 5899999999999999999988888776543 68899
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-----CCEEEEEcC--C
Q 009266 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-----SELLVSYND--E 282 (538)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~--~ 282 (538)
+.+|+ +.++++++ ++|++|++.+.++ ...+.+|.++|++++|.-. |.++.+... .
T Consensus 151 ~is~D-~~~l~~as--~~ik~~~~~~kev---------------v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 151 CISPD-GKILLTAS--RQIKVLDIETKEV---------------VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred EEcCC-CCEEEecc--ceEEEEEccCceE---------------EEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 99998 77888776 5899999999874 4556788999999999877 777766653 3
Q ss_pred eEEEeeccC
Q 009266 283 FIYLFTQDM 291 (538)
Q Consensus 283 ~i~~~d~~~ 291 (538)
.|.+|-+..
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 577887654
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.4e-10 Score=107.88 Aligned_cols=242 Identities=10% Similarity=0.107 Sum_probs=138.8
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCce--E-EEEeCC--CcEEEeecccCceeeeeeccccCCCcEEEE
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS--I-VTCAAD--GQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--l-~s~~~d--g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (538)
..|.+.+...+.. ..+ ......+..-+|+| +|+. + ++...+ ..|.+.++..+...... ...+.....+
T Consensus 165 ~~l~~~d~dG~~~-~~l-t~~~~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---~~~g~~~~p~ 237 (428)
T PRK01029 165 GELWSVDYDGQNL-RPL-TQEHSLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---ALQGNQLMPT 237 (428)
T ss_pred ceEEEEcCCCCCc-eEc-ccCCCCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceEee---cCCCCccceE
Confidence 3677777765543 334 34555677889999 9875 2 244333 35777788776554432 2334455689
Q ss_pred EcCCCCcEEEEEcCCC----cEEEEecCCC---CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE-EEeCCCeEE
Q 009266 158 IEPGSPHVFYTCGEDG----LVQHFDLRTG---AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEYTR 229 (538)
Q Consensus 158 ~~~~~~~~l~s~~~dg----~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~v~ 229 (538)
|+|+|.+++++....| .+.+|++..+ ........ ........+|+|+ |+.|+ +...+|...
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~----------~~~~~~~p~wSPD-G~~Laf~s~~~g~~~ 306 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE----------AFGTQGNPSFSPD-GTRLVFVSNKDGRPR 306 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC----------CCCCcCCeEECCC-CCEEEEEECCCCCce
Confidence 9999965555554333 3444676653 22222111 0112356799998 55544 444567656
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC----CeEEEeeccCCCCCCCCCCCCccc
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDMGLGPNPPPSSPVST 305 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~ 305 (538)
||.+....... . ..........+....|+|+|+.|+.... ..|++|++.++..
T Consensus 307 ly~~~~~~~g~-----------~-~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----------- 363 (428)
T PRK01029 307 IYIMQIDPEGQ-----------S-PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----------- 363 (428)
T ss_pred EEEEECccccc-----------c-eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-----------
Confidence 66543210000 0 0111112345677899999998887652 2699999876421
Q ss_pred cccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc---CCeEEEeeccCcceeEEee
Q 009266 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFIWKKKGGELIRVIE 382 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~---dg~i~iwd~~~~~~~~~~~ 382 (538)
..+..... .+....| +|+|++|+..+. ...|++|++.+++.....
T Consensus 364 ----------------------------~~Lt~~~~--~~~~p~w-SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt- 411 (428)
T PRK01029 364 ----------------------------YQLTTSPE--NKESPSW-AIDSLHLVYSAGNSNESELYLISLITKKTRKIV- 411 (428)
T ss_pred ----------------------------EEccCCCC--CccceEE-CCCCCEEEEEECCCCCceEEEEECCCCCEEEee-
Confidence 12221111 1456777 999998875432 357889999877654443
Q ss_pred cCcceeeEEeecCCC
Q 009266 383 ADRHVVNCIEPHPHS 397 (538)
Q Consensus 383 ~h~~~v~~~~~s~~~ 397 (538)
...+.+...+|+|-.
T Consensus 412 ~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 IGSGEKRFPSWGAFP 426 (428)
T ss_pred cCCCcccCceecCCC
Confidence 344567778888753
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=2.5e-11 Score=103.59 Aligned_cols=248 Identities=16% Similarity=0.229 Sum_probs=171.7
Q ss_pred eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEE
Q 009266 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (538)
Q Consensus 99 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 178 (538)
...||...|+....-| ...-+++.+.|.++|||--+...............+++++.+.+.. ..|++|-..|++.-+
T Consensus 19 ~~eG~~d~vn~~~l~~--~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIP--KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEF 95 (404)
T ss_pred hhcCchhhhhhheecc--CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEE
Confidence 3478999999988888 7788999999999999975543332222233456789999999988 688999999999888
Q ss_pred ecCCC----CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCC
Q 009266 179 DLRTG----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (538)
Q Consensus 179 d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (538)
.+... ...+.... |...+..+-|+-. ..++++.+.|..+.---.+.+..++.+.+..+
T Consensus 96 s~sedfnkm~~~r~~~~----------h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~------- 157 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLA----------HQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFETP------- 157 (404)
T ss_pred Ehhhhhhhcchhhhhhh----------hhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEeecc-------
Confidence 76532 22222222 4557888888875 67888999888876555555543322111100
Q ss_pred CccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCC
Q 009266 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (538)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
.+.+.+.-. +...+. .+.|.+..+... ....+
T Consensus 158 ---------~t~~~~d~~--~~fvGd~~gqvt~lr~~~~------------------------------------~~~~i 190 (404)
T KOG1409|consen 158 ---------ASALQFDAL--YAFVGDHSGQITMLKLEQN------------------------------------GCQLI 190 (404)
T ss_pred ---------CCCCceeeE--EEEecccccceEEEEEeec------------------------------------CCceE
Confidence 000000000 111111 233333332211 13456
Q ss_pred ceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCccee-EEeecCcceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 334 ~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
.++.+|... +.+++| .|..+.|++|..|..|.+||+.-.+-+ ..+.+|...|..+...+.-+.|++++.||.|.+|
T Consensus 191 ~~~~~h~~~--~~~l~W-d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w 267 (404)
T KOG1409|consen 191 TTFNGHTGE--VTCLKW-DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVW 267 (404)
T ss_pred EEEcCcccc--eEEEEE-cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEE
Confidence 788899987 899999 999999999999999999999765544 5678899999999999999999999999999999
Q ss_pred cCCCC
Q 009266 413 TPNAA 417 (538)
Q Consensus 413 ~~~~~ 417 (538)
+++..
T Consensus 268 ~mn~~ 272 (404)
T KOG1409|consen 268 NMNVK 272 (404)
T ss_pred eccce
Confidence 98753
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=1.3e-11 Score=126.43 Aligned_cols=199 Identities=16% Similarity=0.208 Sum_probs=153.4
Q ss_pred EcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc
Q 009266 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~ 136 (538)
++.|-..|.++.=+|.-.+-+||+.||.|++|....++.+..+.......|+.+.|+. .|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH--QGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc--cCCceeeeccCCceeecccC
Confidence 4445677888888998899999999999999999999988888766679999999999 99999999999999999987
Q ss_pred cCceeeeeeccccCCCcEEEEEcCCCCcEEEEEc---CCCcEEEEecCCCCeeeee-eecccCCCCCcceeeeeEEEEEc
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
++.. ...+.|......+.|.. .++++++ .++.+.+||..-......+ ++ |...++++++.
T Consensus 2282 -pk~~--~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~----------H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2282 -PKPY--TSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC----------HDGGATVLAYA 2345 (2439)
T ss_pred -Ccce--eccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeee----------cCCCceEEEEc
Confidence 2222 34778998888998887 3467665 4578999996543322222 23 45579999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccC
Q 009266 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (538)
|. .++|++|+.+|.|++||++..++...+ +. +. ...++++++ .|.|+||++..
T Consensus 2346 P~-~qllisggr~G~v~l~D~rqrql~h~~--------------------~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2346 PK-HQLLISGGRKGEVCLFDIRQRQLRHTF--------------------QA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred Cc-ceEEEecCCcCcEEEeehHHHHHHHHh--------------------hh----hh-hhheeeccCcccceEEEEccc
Confidence 97 799999999999999999987753221 11 33 445677776 78999999987
Q ss_pred CCCCCCCC
Q 009266 292 GLGPNPPP 299 (538)
Q Consensus 292 ~~~~~~~~ 299 (538)
......++
T Consensus 2400 ~~ll~~~p 2407 (2439)
T KOG1064|consen 2400 FGLLHTFP 2407 (2439)
T ss_pred cchhhcCc
Confidence 54444433
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.32 E-value=2.1e-09 Score=96.06 Aligned_cols=174 Identities=15% Similarity=0.108 Sum_probs=128.1
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC-
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR- 83 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~- 83 (538)
|..-+|.+++..+ .|.+-|.+...|-.+ .-+|.+.|.-..+.-+++-++.|..||
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~i-----------------------qv~~~~~VrY~r~~~~~e~~vigt~dgD 382 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSI-----------------------QVGKKGGVRYRRIQVDPEGDVIGTNDGD 382 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeE-----------------------EcCCCCceEEEEEccCCcceEEeccCCc
Confidence 3445666766666 445555555433332 346788899999988888899999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
.|-|++..+++.. .+ ...-+.|.++..+| +|++++.+.....+.+.++.++..... -+...+-|+.+.|+|++
T Consensus 383 ~l~iyd~~~~e~k-r~-e~~lg~I~av~vs~--dGK~~vvaNdr~el~vididngnv~~i--dkS~~~lItdf~~~~ns- 455 (668)
T COG4946 383 KLGIYDKDGGEVK-RI-EKDLGNIEAVKVSP--DGKKVVVANDRFELWVIDIDNGNVRLI--DKSEYGLITDFDWHPNS- 455 (668)
T ss_pred eEEEEecCCceEE-Ee-eCCccceEEEEEcC--CCcEEEEEcCceEEEEEEecCCCeeEe--cccccceeEEEEEcCCc-
Confidence 8999999887753 33 46678999999999 999999999999999999998876544 34456779999999999
Q ss_pred cEEEEEcCCC----cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 164 HVFYTCGEDG----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 164 ~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
.++|-+--+| .|+++|+.+++....-. ..+.=.+-+|.|+ +++|.-
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-----------~ta~DfsPaFD~d-~ryLYf 505 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-----------PTAYDFSPAFDPD-GRYLYF 505 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCCeEEEecC-----------CcccccCcccCCC-CcEEEE
Confidence 6777765544 69999999887654433 1112345678887 565543
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.31 E-value=7.3e-10 Score=91.51 Aligned_cols=247 Identities=12% Similarity=-0.022 Sum_probs=162.2
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC-CCEEEEecCCCeEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILW 88 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~d~~i~iw 88 (538)
...||.|+..|...+|...+.+.. .+....|...|+-+.=..+ ..-+..++.|.++++.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h--------------------~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGH--------------------LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTM 143 (344)
T ss_pred ccEEEeccccceeeeecccCcccc--------------------eeeecccccchhhhhhhcccccceeeccCCcceeEE
Confidence 456899999999999999876653 2223334433322211111 2345567888899999
Q ss_pred ECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee-eeeccccCCCcEEEEEcCCCCcEEE
Q 009266 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFY 167 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (538)
.+..+......... .-.+.++++++ +++++++.+....|-.|.+....... .......+..-.+..|+... ..+|
T Consensus 144 ~~~~~s~~~~~h~~-~~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FA 219 (344)
T KOG4532|consen 144 VVSGDSNKFAVHNQ-NLTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFA 219 (344)
T ss_pred EEecCcccceeecc-ccceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEE
Confidence 88765543333111 12388999999 99999999999999999987554322 22344555666788999887 6899
Q ss_pred EEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC-cEEEEEeCCCeEEEEEcCCccccCCCCCCC
Q 009266 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA-NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (538)
Q Consensus 168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 246 (538)
++..||++.|||++............. +. +.+.++.+.|+|-|. .+|+..-.-+.+.+.|+|+++-.+.+...
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm~~~sstr---p~--hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~- 293 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPMAEISSTR---PH--HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP- 293 (344)
T ss_pred EEecCCcEEEEEecccccchhhhcccC---CC--CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC-
Confidence 999999999999998765443332211 11 666899999998532 23444455678999999998643222111
Q ss_pred CCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCC
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (538)
......+....|....|+.++.-+.+.+...+.-|++...
T Consensus 294 ------~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 294 ------DDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred ------ccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 1112222233488888888888777777777777777653
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=4e-09 Score=99.95 Aligned_cols=371 Identities=14% Similarity=0.093 Sum_probs=214.1
Q ss_pred ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCC------------CEEEE
Q 009266 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG------------DILIS 78 (538)
Q Consensus 11 ~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g------------~~l~t 78 (538)
.+||-|+.. .|.|-|..+-++ ++.+.-|...|+.+.|.|-. -+||+
T Consensus 27 GLiAygshs-lV~VVDs~s~q~---------------------iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 27 GLIAYGSHS-LVSVVDSRSLQL---------------------IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred ceEEEecCc-eEEEEehhhhhh---------------------hhccccCccceeEEEeccCCCchhccCccccceeEEe
Confidence 356666543 566767665554 46788899999999998731 25778
Q ss_pred ecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCC--ceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEE
Q 009266 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD--RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (538)
Q Consensus 79 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~ 156 (538)
+...|.|.|||...+..+..+ ..|..++..++|-|..+. ..|+.-....+|.+|+..+|..... .........|+
T Consensus 85 aD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~f 161 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSCF 161 (1062)
T ss_pred ccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--cccCCcceeee
Confidence 888899999999988876666 788999999999884333 3566666778999999999988766 33344567779
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEecCCC----CeeeeeeecccCCC---------CCcce---------eeeeEEEEEcCC
Q 009266 157 AIEPGSPHVFYTCGEDGLVQHFDLRTG----AATELFTCRPIDDR---------RNYMT---------VVNLNAIAIDPR 214 (538)
Q Consensus 157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~---------~~~~~---------~~~v~~~~~~~~ 214 (538)
.+.|-.++.+..-+..|.|.+-+.-.. ...+.++......- .+..+ ......++|+|.
T Consensus 162 ~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~ 241 (1062)
T KOG1912|consen 162 RVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH 241 (1062)
T ss_pred eeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence 999877666676677787777765321 11222222111000 00000 001224577887
Q ss_pred CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC--EEEEEc-CCeEEEeeccC
Q 009266 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE--LLVSYN-DEFIYLFTQDM 291 (538)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~-~~~i~~~d~~~ 291 (538)
-.++++ ......+.++|+.-...... ..-..+.+.-+.+-|+++ .|.+.. +|.+.+|-.+.
T Consensus 242 ~rn~lf-i~~prellv~dle~~~~l~v---------------vpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 242 WRNILF-ITFPRELLVFDLEYECCLAV---------------VPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhceEE-EEeccceEEEcchhhceeEE---------------EEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 444444 44567789999886543222 111234455667777654 455554 77888887654
Q ss_pred CCCCCCCCC---------------CCccccccccccCCC-CccccC-------------------C------------CC
Q 009266 292 GLGPNPPPS---------------SPVSTRSEASEMGSD-HTSAAS-------------------P------------ST 324 (538)
Q Consensus 292 ~~~~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~-------------------~------------~~ 324 (538)
.......+. .....++..+...|. ...+++ . .+
T Consensus 306 ~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f 385 (1062)
T KOG1912|consen 306 EPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDF 385 (1062)
T ss_pred cCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccc
Confidence 211111100 000001111111111 000000 0 00
Q ss_pred CCCCc------ccCCceeeccccceee---------eEEEEecCCC-------cEEEEeccCCeEEEeeccCcceeEEee
Q 009266 325 ANTDV------RIAPQVYKGHRNCVTV---------KGVNFFGPKC-------EYVVSGSDCGRIFIWKKKGGELIRVIE 382 (538)
Q Consensus 325 ~~~~~------~~~~~~~~~~~~~~~i---------~~v~~~s~~~-------~~l~~gs~dg~i~iwd~~~~~~~~~~~ 382 (538)
..... ...+..-.+|....++ .-+.. .|.+ .++|.|...|+|.++|+.++..-+.+.
T Consensus 386 ~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~-~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs 464 (1062)
T KOG1912|consen 386 NLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVEN-DPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS 464 (1062)
T ss_pred cCceeehhhccccchhhcCCCCCCceeeecccCcccceeec-CCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc
Confidence 00000 0000001122222111 11111 2333 267889999999999999999999999
Q ss_pred cCcceeeEEeecCCCCeEEEe---------ecCCceEEecCCCCcccccC
Q 009266 383 ADRHVVNCIEPHPHSTVLASS---------GIESDIKILTPNAADRATLP 423 (538)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~---------~~dg~v~vw~~~~~~~~~~~ 423 (538)
.|...|.++.|-...+++-.+ +.-+.+.|-++.+|....+.
T Consensus 465 vht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR 514 (1062)
T KOG1912|consen 465 VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFR 514 (1062)
T ss_pred ccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccc
Confidence 999999999998766644322 22345677888888655544
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.30 E-value=9.7e-11 Score=96.13 Aligned_cols=200 Identities=14% Similarity=0.104 Sum_probs=124.8
Q ss_pred eEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 009266 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~ 91 (538)
.|+++..++.+......++.++.. .++..+..+.+.+..|+++-.+-+.+-.+..++++..||.+.+++..
T Consensus 49 ~lf~~e~~~~~ss~g~~r~~~~~~---------~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~ 119 (319)
T KOG4714|consen 49 ILFTGETSSQIISLGKGRGRCISL---------WERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTD 119 (319)
T ss_pred eeecccchhheeeeccceEEEech---------hhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEech
Confidence 355666666665555554444311 12223334445555566655555555567789999999999999876
Q ss_pred CCce-eeeeccCCCCCeEEEEEeecCCCceEEEEe-----CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcE
Q 009266 92 TERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-----ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 92 ~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-----~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
.-.. ..++...|.+ -.+.++.. .+.+|.++. .-+..+.|++...+..... ......|.+++-+|...++
T Consensus 120 ~~~~~~~~i~~~~~~-~as~~~~~--~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--~~~~~~v~~l~~hp~qq~~ 194 (319)
T KOG4714|consen 120 KDLALMSRIPSIHSG-SASRKICR--HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--KKALDAVTALCSHPAQQHL 194 (319)
T ss_pred HHHhhhhhccccccc-ccccceee--cccEEecCCcceEeeccceeeeccccccccccc--ccccccchhhhCCcccccE
Confidence 5211 1111111221 11222333 344444433 2345666776544333221 1122349999999988889
Q ss_pred EEEEcCCCcEEEEecCCCCeeeee-eecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 009266 166 FYTCGEDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
+++|+.+|.+.+||.+.......+ +. |..+++.+.|+|.++..|+++++||.+..||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~a----------hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKA----------HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHH----------hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999987443322 22 5558999999999999999999999999999864
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.30 E-value=3.2e-08 Score=102.29 Aligned_cols=371 Identities=13% Similarity=0.062 Sum_probs=203.1
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccc-----------cchhhcccccceEEe---e--------e------e
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRN-----------FALRRRASEDLVLRL---G--------I------Y 54 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~-----------~~~~~~~~~~~~~~~---~--------~------~ 54 (538)
.+..+|+..+|+....+++|.+-... ...+... +...-.|++....+- + + .
T Consensus 125 a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~ 203 (928)
T PF04762_consen 125 AASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDE 203 (928)
T ss_pred EEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcccc
Confidence 45678999999999889888876543 3322220 000111111111000 0 0 1
Q ss_pred eEEcCCcCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC--
Q 009266 55 AKLDKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-- 126 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l~t~~~------d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-- 126 (538)
..+. +...-..|+|-.||+++|+.+. -+.||||+-+ |....+. ..-.+--.+++|.| .|++||+...
T Consensus 204 ~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrP--sG~lIA~~q~~~ 278 (928)
T PF04762_consen 204 GKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRP--SGNLIASSQRLP 278 (928)
T ss_pred Cccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCC--CCCEEEEEEEcC
Confidence 1223 4456678999999999998764 3579999965 6654433 33444456789999 9999998875
Q ss_pred -CCcEEEeecccCceeeeeecc--ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 127 -DGQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 127 -dg~v~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
...|.+|.-+ |-.-....++ .....|..|.|++++ .+|+....+. |.+|-..+..-.......-. ..
T Consensus 279 ~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-------~~ 348 (928)
T PF04762_consen 279 DRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-------SS 348 (928)
T ss_pred CCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-------CC
Confidence 3456666643 2222222232 455689999999999 6788766554 99998877654332222111 11
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC-------------------------CCCCCCCcccCCCCccC
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS-------------------------TDFGQPADYFCPPNLIG 258 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~ 258 (538)
..+..+.|+|.....|...+..|.+..+++.-...... ....+|...+ . -
T Consensus 349 ~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~---~--l 423 (928)
T PF04762_consen 349 ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY---E--L 423 (928)
T ss_pred CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce---E--E
Confidence 23455999998778888888777776554431111000 0011111111 1 1
Q ss_pred CCccceEEEEEcCCCCEEEEE-cCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee
Q 009266 259 DEQVGITGLAFSDQSELLVSY-NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (538)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.-..+|..++|++++..+++. +++.|.+|............ +... .. .... ........
T Consensus 424 ~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~--~~~~----~~----------~~~~----~~~~~~~~ 483 (928)
T PF04762_consen 424 ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKP--PKLL----SS----------ISLD----SMDISDSE 483 (928)
T ss_pred cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccC--cchh----hh----------cccc----cccccccc
Confidence 124689999999988755554 47778888755432111000 0000 00 0000 00000000
Q ss_pred ccccceeeeEEEEecCCCcEEEEecc---CCeEEEeeccCcc---eeEEeecCcceeeEEeecCCCCeEEEeecCCceEE
Q 009266 338 GHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFIWKKKGGE---LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411 (538)
Q Consensus 338 ~~~~~~~i~~v~~~s~~~~~l~~gs~---dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~v 411 (538)
.....+..++|++ ...+++.... -..+.++++...+ .+.....-.+.+..+...+....++.-..+|.|..
T Consensus 484 --~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 484 --LPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred --cccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 1111367888844 4444444433 3678888874332 22333333456666666666655666677888886
Q ss_pred ecCCCC
Q 009266 412 LTPNAA 417 (538)
Q Consensus 412 w~~~~~ 417 (538)
.+....
T Consensus 561 ~~~~~~ 566 (928)
T PF04762_consen 561 LSSDGE 566 (928)
T ss_pred eecCCC
Confidence 655443
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=3e-09 Score=111.94 Aligned_cols=288 Identities=11% Similarity=0.055 Sum_probs=162.8
Q ss_pred EEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccc------------cCCCcEEEEEcCCCCcEEEEEcCCCcE
Q 009266 108 FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK------------HQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (538)
Q Consensus 108 ~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (538)
..+++.+. ++.++++-+..+.|++|+.... .+....-.+ +-.....|++.+++..++++-...+.|
T Consensus 571 ~gvavd~~-~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLL-NNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECC-CCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 45778761 3556666677889999997643 222111101 112467899999874344555556789
Q ss_pred EEEecCCCCeeeeeeecccC--CCCC-c----ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCC
Q 009266 176 QHFDLRTGAATELFTCRPID--DRRN-Y----MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (538)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~--~~~~-~----~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (538)
+++++.++.. ..+...... ...+ . ........++|+|+++.++++.+.++.|++|+..++........+...
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877643 222211000 0000 0 001134679999965778888888999999998776432110000000
Q ss_pred cccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 009266 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
.. .........-.....++++|++..|+++. +++|++|++.++.........+.. + ..+ .....
T Consensus 728 ~~-~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~---------~--~~l--~~fG~ 793 (1057)
T PLN02919 728 NL-NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF---------S--DNL--FKFGD 793 (1057)
T ss_pred cC-CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc---------C--ccc--ccccC
Confidence 00 00000001123567899999998555444 458999998764211000000000 0 000 00000
Q ss_pred CCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee-------------cCcceeeEEee
Q 009266 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-------------ADRHVVNCIEP 393 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~~~~ 393 (538)
. ..........+ ...+++ +++|+++++-+.+++|++|+..++....... +.-..+..|++
T Consensus 794 ~-dG~g~~~~l~~-----P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 794 H-DGVGSEVLLQH-----PLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred C-CCchhhhhccC-----CceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 0 00000000011 347777 9999999999999999999998776543221 11135788999
Q ss_pred cCCCCeEEEeecCCceEEecCCCCcc
Q 009266 394 HPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 394 s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+++|+++++-+.++.|++|++.+++.
T Consensus 867 d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 867 GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999999999999999987654
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=1.5e-08 Score=104.74 Aligned_cols=203 Identities=14% Similarity=0.188 Sum_probs=134.3
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEE----ECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILW----DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw----~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~ 135 (538)
..+.|.++.|.++...|+.+..+|.|.+. +..+... .....-...|.+++||| |+..|+.++.+++|.+..-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEec
Confidence 35789999999999989999999999999 5443332 22233456899999999 9999999999888877532
Q ss_pred c----c---------C--cee------e-----------------e--------eeccccCCCcEEEEEcCCCCcEEEEE
Q 009266 136 L----E---------R--GGV------E-----------------T--------KLLGKHQGRAHKLAIEPGSPHVFYTC 169 (538)
Q Consensus 136 ~----~---------~--~~~------~-----------------~--------~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (538)
. . + +.+ + . ..+. +...-..|+|-.|| .+||+.
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVs 227 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVS 227 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEE
Confidence 1 0 0 000 0 0 0011 22345678999999 677776
Q ss_pred cC---C---CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC---CCeEEEEEcCCccccC
Q 009266 170 GE---D---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---DEYTRLYDIRKYKWDG 240 (538)
Q Consensus 170 ~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~ 240 (538)
+. . ..||||+-. |.....-... .+--.+++|.|. |++||+.-. ...|.+|.-+..+ .+
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v----------~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfErNGLr-hg 294 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPV----------DGLEGALSWRPS-GNLIASSQRLPDRHDVVFFERNGLR-HG 294 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccC----------CCccCCccCCCC-CCEEEEEEEcCCCcEEEEEecCCcE-ee
Confidence 54 2 579999854 5433332211 112357899998 789888764 3456677644332 11
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCC
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (538)
. |.++. ......|..++|++++..||....+.|.+|...+-
T Consensus 295 e---------F~l~~--~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY 335 (928)
T PF04762_consen 295 E---------FTLRF--DPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNY 335 (928)
T ss_pred e---------EecCC--CCCCceeeEEEECCCCCEEEEEecCCceEEEeeCC
Confidence 1 11111 23356789999999999999988888999987753
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=9.3e-10 Score=104.10 Aligned_cols=302 Identities=15% Similarity=0.126 Sum_probs=191.1
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecC----------CCceEEEEeCCCcEE
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT----------DDRSIVTCAADGQVR 131 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~----------~~~~l~s~~~dg~v~ 131 (538)
..-.++.|+|.| +||.|+. ..|.+-|..+-+.+..+ ..|...|+.+.|.|.. -.-+||++...|.|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 346788999987 7777775 47889998888887777 7899999999999821 123567778889999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCC---CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPG---SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
+||+.....+.. +..|..++..++|-|. .+.+|++-....+|.+|+..+|+....+.... ....|
T Consensus 93 l~d~~~~s~~~~--l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~----------~iLs~ 160 (1062)
T KOG1912|consen 93 LVDFVLASVINW--LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH----------EILSC 160 (1062)
T ss_pred EEEehhhhhhhh--hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC----------cceee
Confidence 999988766655 7888999999999763 33567777777899999999999887765422 24677
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCc----------------cCCC---ccceEEEEE
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL----------------IGDE---QVGITGLAF 269 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~---~~~i~~~~~ 269 (538)
+.+.|-+.+.|..-+..|.|.+-+.-..+.... .++.+++.....- .... ......++|
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~--pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV--PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCC--CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 899987777888878888877766543321110 0111111111000 0000 001224677
Q ss_pred cCCCCEEEEE-cCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEE
Q 009266 270 SDQSELLVSY-NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV 348 (538)
Q Consensus 270 s~~~~~l~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 348 (538)
+|.-+.++.. -...+.++|++-. .++....-..+...+..+
T Consensus 239 ~p~~rn~lfi~~prellv~dle~~--------------------------------------~~l~vvpier~~akfv~v 280 (1062)
T KOG1912|consen 239 SPHWRNILFITFPRELLVFDLEYE--------------------------------------CCLAVVPIERGGAKFVDV 280 (1062)
T ss_pred ChhhhceEEEEeccceEEEcchhh--------------------------------------ceeEEEEeccCCcceeEe
Confidence 8865544433 3557889988753 223333333333224444
Q ss_pred EEecCCCcEEEEeccCCeEEEeeccCc----------------ceeEEeecC-cceeeEEeecCC-CCeEEEeecCCceE
Q 009266 349 NFFGPKCEYVVSGSDCGRIFIWKKKGG----------------ELIRVIEAD-RHVVNCIEPHPH-STVLASSGIESDIK 410 (538)
Q Consensus 349 ~~~s~~~~~l~~gs~dg~i~iwd~~~~----------------~~~~~~~~h-~~~v~~~~~s~~-~~~l~s~~~dg~v~ 410 (538)
.- .|....|++.-.+|.+.||-.+.. ..+..+..- .-.+...+..|. ...++.--.+|.+.
T Consensus 281 lP-~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~ 359 (1062)
T KOG1912|consen 281 LP-DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDST 359 (1062)
T ss_pred cc-CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhH
Confidence 33 455568999999999999986542 222222111 122334444555 33455555678889
Q ss_pred EecCCCCcc
Q 009266 411 ILTPNAADR 419 (538)
Q Consensus 411 vw~~~~~~~ 419 (538)
+|.+.+++.
T Consensus 360 ~w~l~~~ri 368 (1062)
T KOG1912|consen 360 FWQLSNGRI 368 (1062)
T ss_pred HHhhhcCCc
Confidence 999986544
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.22 E-value=3.1e-10 Score=99.21 Aligned_cols=167 Identities=12% Similarity=0.122 Sum_probs=120.5
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
+..+++.+++||++.......++++...... .++.....+......|+.+..+......-.++..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~---------------~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKG---------------AKLLDVSCVPKRPTAISFIREDTSVLVADKAGDV 131 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCc---------------ceeeeEeecccCcceeeeeeccceEEEEeecCCc
Confidence 3457889999999988888878887632210 1111122233233445555554444334445566
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
..+.+|....+.+... -+|-+.++.|+|+| |+++|+++..|..|+|-.+.....+.. ..-+|+.-|..+++-++.
T Consensus 132 ~~~di~s~~~~~~~~~--lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~f~Ies-fclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 132 YSFDILSADSGRCEPI--LGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPATFVIES-FCLGHKEFVSTISLTDNY 206 (390)
T ss_pred eeeeeecccccCcchh--hhhhhhhheeeecC--CCCEEEEecCCceEEEEecCcccchhh-hccccHhheeeeeeccCc
Confidence 6788888776555433 59999999999999 999999999999999988765544443 355799999999999875
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeeeeeee
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 191 (538)
.|++++.|++|++||+++++.+..+..
T Consensus 207 --~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 207 --LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred --eeeecCCCCcEEEEecccCCcccccch
Confidence 589999999999999999998865543
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=2.6e-08 Score=104.99 Aligned_cols=280 Identities=11% Similarity=0.104 Sum_probs=162.8
Q ss_pred EEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeecc-C------------CCCCeEEEEEeecCCCceEEEEe-CCCc
Q 009266 65 NTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHS-G------------HNDNVFQAKIMPFTDDRSIVTCA-ADGQ 129 (538)
Q Consensus 65 ~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~~~~~~~~~-~------------~~~~v~~l~~~~~~~~~~l~s~~-~dg~ 129 (538)
..+++++. +.++++-+..+.|++|+.. +..+..+-. + +-.....|++.+ ++..|+++. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence 46788874 6677777888999999975 554444321 1 112457899998 777666654 4578
Q ss_pred EEEeecccCceeeeee-------ccc-------cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeeccc-
Q 009266 130 VRHAQILERGGVETKL-------LGK-------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI- 194 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~-------~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~- 194 (538)
|+++++.++....... ..+ .-.....++|+|++..++++.+.++.|++|+..++.... +.....
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999987654221100 000 012346899999554777888888999999998765432 211100
Q ss_pred CCCCCc----ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCcc-------CCCccc
Q 009266 195 DDRRNY----MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-------GDEQVG 263 (538)
Q Consensus 195 ~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 263 (538)
....+. ........|+++|+++.++++-+.++.|++|++.++...... .+.+.......... ......
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-GGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-ecccccCcccccccCCCCchhhhhccC
Confidence 000000 011245679999985557777778899999999865421000 00000000000000 001123
Q ss_pred eEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccc
Q 009266 264 ITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC 342 (538)
Q Consensus 264 i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
..+++++++|.++++-. +++|++|+..++....... ... . ...+ . ....+.-.
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~----------------~-G~~d----G---~~~~a~l~- 859 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGK----------------A-GFKD----G---KALKAQLS- 859 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCC----------------c-CCCC----C---cccccccC-
Confidence 46899999998777766 5599999987643211100 000 0 0000 0 00111111
Q ss_pred eeeeEEEEecCCCcEEEEeccCCeEEEeeccCcce
Q 009266 343 VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (538)
Q Consensus 343 ~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~ 377 (538)
....+++ +++|+++++-+.+++|++|++.+++.
T Consensus 860 -~P~GIav-d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 860 -EPAGLAL-GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -CceEEEE-eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1567888 99999999999999999999988765
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=4.3e-11 Score=108.55 Aligned_cols=249 Identities=12% Similarity=0.143 Sum_probs=166.2
Q ss_pred cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccC-----ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcE
Q 009266 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-----GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (538)
Q Consensus 101 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (538)
.+|...|..++-.. +.+.+++++.|.+|++|.++.. ......++..|+.+|..+.|..+. +.+++ -||.|
T Consensus 732 ~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~gi 806 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGI 806 (1034)
T ss_pred cCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceeee--ccCcc
Confidence 78999999888776 8889999999999999998642 122334588999999999999877 45554 56889
Q ss_pred EEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCC
Q 009266 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (538)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
++||.--++.+.+....+. +.....|.|+.--.. ..+++.++...+|+++|.+...+...... .
T Consensus 807 HlWDPFigr~Laq~~dapk-----~~a~~~ikcl~nv~~-~iliAgcsaeSTVKl~DaRsce~~~E~kV----------c 870 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPK-----EGAGGNIKCLENVDR-HILIAGCSAESTVKLFDARSCEWTCELKV----------C 870 (1034)
T ss_pred eeecccccchhHhhhcCcc-----cCCCceeEecccCcc-hheeeeccchhhheeeecccccceeeEEe----------c
Confidence 9999877776654432221 113334555543221 23444447889999999998876443222 1
Q ss_pred ccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCc
Q 009266 256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (538)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
.....+..+++++..+.|.+++++- .|+|.+.|.++++....
T Consensus 871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs------------------------------------- 913 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS------------------------------------- 913 (1034)
T ss_pred cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc-------------------------------------
Confidence 1123356789999999999998875 77999999998643222
Q ss_pred eeeccccceeeeEEEEecCCCcEEEEeccCCeEEE-eeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI-WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 335 ~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~i-wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
++.-... ...++ .|..+.|+....+.++.| |....+....+.+....+..- ...-|+.|+++.....+.||.
T Consensus 914 -wrpmecd--llqla--apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahf--lqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 914 -WRPMECD--LLQLA--APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHF--LQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred -CCcccch--hhhhc--CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhh--hhccCceeEEeccCcEEEEEe
Confidence 1111111 33444 467778888888888888 988777665555533332221 122466777777777788875
Q ss_pred C
Q 009266 414 P 414 (538)
Q Consensus 414 ~ 414 (538)
-
T Consensus 987 d 987 (1034)
T KOG4190|consen 987 D 987 (1034)
T ss_pred c
Confidence 3
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.21 E-value=4.1e-09 Score=87.18 Aligned_cols=207 Identities=13% Similarity=0.034 Sum_probs=137.2
Q ss_pred EEEEEcC-----CCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 65 NTVSFNT-----DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 65 ~~~~~s~-----~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
+.|.|-| .-.+||.||.-|...+|...+.+....+...|...|.-+.=.. ....-+..++.|.++++..+.-+.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c-d~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC-DLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhc-ccccceeeccCCcceeEEEEecCc
Confidence 4455655 2358999999999999999877765555455555443222111 022356777888899988886543
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee-eeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
.... +.-..-.+.++++++++ .++++.+....|..|.+...... ..+.... ....-.+..|+.. ...
T Consensus 150 ~~~~--~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~--------t~D~gF~~S~s~~-~~~ 217 (344)
T KOG4532|consen 150 NKFA--VHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAP--------TSDHGFYNSFSEN-DLQ 217 (344)
T ss_pred ccce--eeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecc--------cCCCceeeeeccC-cce
Confidence 3222 11111237889999998 68899999999999988754322 2212111 1123467788886 689
Q ss_pred EEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCE---EEEEcCCeEEEeeccCCCC
Q 009266 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL---LVSYNDEFIYLFTQDMGLG 294 (538)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~---l~~~~~~~i~~~d~~~~~~ 294 (538)
+|++..||++.|||+|....... .......+|++.++.+.|++-|.+ +++-.-+.+.+.|+++...
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~----------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMA----------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred EEEEecCCcEEEEEecccccchh----------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 99999999999999998653111 123344568999999999987652 3333356899999988643
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.20 E-value=1.6e-08 Score=85.19 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=92.9
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCc--e--eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee
Q 009266 66 TVSFNTDGDILISGSDDRRVILWDWKTER--V--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (538)
Q Consensus 66 ~~~~s~~g~~l~t~~~d~~i~iw~~~~~~--~--~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 141 (538)
.++.+.+|++||.-- |..|-|-.....- . ..++.+.....-+.++||| ++.+||.+...|+|+++|+......
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccceeE
Confidence 467788999888764 5677776654321 1 1233334445678899999 9999999999999999998753322
Q ss_pred eee----eccccCCCcEEEEEcCCC-----CcEEEEEcCCCcEEEEecCCCC-----eeeeeeecccCCCCCcceeeeeE
Q 009266 142 ETK----LLGKHQGRAHKLAIEPGS-----PHVFYTCGEDGLVQHFDLRTGA-----ATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 142 ~~~----~~~~~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
... ....-...|..|.|.+.. ...|++-...|.++-|-+..+. ....+..... .+..|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~-------yp~Gi~ 151 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH-------YPHGIN 151 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc-------CCCcee
Confidence 110 011123567777776533 2356777788888888764322 2222222111 334799
Q ss_pred EEEEcCCCCcEEEEEeC
Q 009266 208 AIAIDPRNANLFAVAGS 224 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~ 224 (538)
++.++|. .++|++|+.
T Consensus 152 ~~vy~p~-h~LLlVgG~ 167 (282)
T PF15492_consen 152 SAVYHPK-HRLLLVGGC 167 (282)
T ss_pred EEEEcCC-CCEEEEecc
Confidence 9999997 567666654
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.9e-10 Score=99.24 Aligned_cols=269 Identities=11% Similarity=0.010 Sum_probs=174.7
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC-CCeE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-DRRV 85 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~-d~~i 85 (538)
+...+++.+++.||.++.|.-..-.. ...+..++.|-+.|.+++.+.+|.+++|.+. |..+
T Consensus 17 ~tka~fiiqASlDGh~KFWkKs~isG------------------vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 17 PTKAKFIIQASLDGHKKFWKKSRISG------------------VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred eehhheEEeeecchhhhhcCCCCccc------------------eeehhhhHHHHHHHHhhhccccceeEeeccCcccce
Confidence 44567899999999999998762111 1335667889999999999999999999777 9999
Q ss_pred EEEECCCCceeeeec-cCCCCCeEEEEEeecCCC-ceEE-EEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 86 ILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDD-RSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~-~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
+++++.+-..+.-+. .--.+.+ ++..+| .+. ..|+ +.-.++.+.|+|-....+.....-.-|..+|.++.++|.+
T Consensus 79 KvfDvEn~DminmiKL~~lPg~a-~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKLVDLPGFA-EWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred eEEEeeccchhhhcccccCCCce-EEecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 999987655432211 1111111 112222 011 1233 3335788999997766555444456799999999999998
Q ss_pred CcEEEEEcCCCcEEEEecCC------CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 163 PHVFYTCGEDGLVQHFDLRT------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
..+++....|.|.-|.... .+....++..... ..-........++.|+|+ +..+.+-+.|..|+++.++++
T Consensus 157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL-y~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL-YGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred -cceeeccccceeEeecCCCcccCccccccccccccchh-hcccccccCccceEEccc-cCcccccCcccEEEEEEeccc
Confidence 5788888899999998773 1111111100000 000002345789999998 789999999999999999999
Q ss_pred cccCCCCCCCCCcc------cCCC------------CccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCC
Q 009266 237 KWDGSTDFGQPADY------FCPP------------NLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (538)
Q Consensus 237 ~~~~~~~~~~~~~~------~~~~------------~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~ 298 (538)
++.+.+.-...... +.+. .+..+....-+.+.|...|++|+-++-=.|++.++.++.....+
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 87654322111100 0000 01112234456788999999999888778999999887654443
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.2e-09 Score=96.94 Aligned_cols=299 Identities=10% Similarity=0.086 Sum_probs=185.3
Q ss_pred CCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--CceeeeeccCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeec
Q 009266 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQI 135 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~ 135 (538)
-|...|+.+... -.+++++++.||.++.|.-.. |-........|...|.+++.+. ++.++.|.+. |..++++++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEEEe
Confidence 388888887665 467999999999999997432 2222333368899999999998 9999999777 999999999
Q ss_pred ccCceeeeeeccccCCCcEEEEEcCCCC--cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 136 LERGGVETKLLGKHQGRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
.+-..+....+....+.+.. ..+|..+ .+.++.-.++.|.++|-....+...+.. .. |..+|.++.++|
T Consensus 84 En~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk-kl-------H~sPV~~i~y~q 154 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK-KL-------HFSPVKKIRYNQ 154 (558)
T ss_pred eccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec-cc-------ccCceEEEEeec
Confidence 87654433223333333322 2233211 2333445678899999776553322211 11 566899999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCC-ccccCC-CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeecc
Q 009266 214 RNANLFAVAGSDEYTRLYDIRK-YKWDGS-TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQD 290 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~ 290 (538)
. +..+++....|.|.-|.... .+.... ..+....... ............++.|+|+|..+.+.+.+ .|+++...
T Consensus 155 a-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd--Ly~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 155 A-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD--LYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred c-ccceeeccccceeEeecCCCcccCccccccccccccch--hhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 7 78899999999999999873 211111 1111111000 01111235678899999999999988855 89999999
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
++.....+............+ + ..+...... .+....+.+..|... .-+.++| ...|++|+-|+-=| |+|.
T Consensus 232 tGklvqeiDE~~t~~~~q~ks--~--y~l~~Velg--RRmaverelek~~~~-~~~~~~f-des~~flly~t~~g-ikvi 302 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKS--P--YGLMHVELG--RRMAVERELEKHGST-VGTNAVF-DESGNFLLYGTILG-IKVI 302 (558)
T ss_pred cchhhhhhhccchhhhhcccc--c--cccceeehh--hhhhHHhhHhhhcCc-ccceeEE-cCCCCEEEeeccee-EEEE
Confidence 998777665443322221111 0 000000000 001111222233332 2445666 99999999988655 8999
Q ss_pred eccCcceeEEe
Q 009266 371 KKKGGELIRVI 381 (538)
Q Consensus 371 d~~~~~~~~~~ 381 (538)
++.++.+++.+
T Consensus 303 n~~tn~v~ri~ 313 (558)
T KOG0882|consen 303 NLDTNTVVRIL 313 (558)
T ss_pred EeecCeEEEEe
Confidence 99998887765
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.16 E-value=1.7e-09 Score=94.70 Aligned_cols=165 Identities=13% Similarity=0.144 Sum_probs=113.3
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec--cCCCCCeEEEEEeecCCCceEEEEeCC---CcEEEeeccc
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILE 137 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~v~vwd~~~ 137 (538)
.+..+..+|.+++||.+.......++++.......++. ..-...-+++.|.. +...+..+..- ..+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~--~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR--EDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee--ccceEEEEeecCCceeeeeecccc
Confidence 34556677889999988887777777665433211111 11222334455554 44555554444 4455555554
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
+.+. .+-+|-..++.++|+|++ ++|+++..|..|||-.......+..+.. | |..-|..++.-++ +
T Consensus 142 ~~~~---~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesfcl-------G--H~eFVS~isl~~~--~ 206 (390)
T KOG3914|consen 142 GRCE---PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCL-------G--HKEFVSTISLTDN--Y 206 (390)
T ss_pred cCcc---hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhcc-------c--cHhheeeeeeccC--c
Confidence 3332 366899999999999999 7999999999999988776665555542 2 4447899999884 7
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (538)
.|++|+.|++|++||+++++.+....+
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeeecCCCCcEEEEecccCCcccccch
Confidence 899999999999999999987755443
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=3.7e-08 Score=93.37 Aligned_cols=173 Identities=9% Similarity=0.067 Sum_probs=102.5
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCce-EEEEeC---CCcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
..|.+=|... .....+..+ . .+...+|+| +|+. ++..+. ...|.++++.+++.... ....+......|
T Consensus 169 ~~l~~~d~dg-~~~~~~~~~-~-~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l---t~~~g~~~~~~~ 240 (419)
T PRK04043 169 SNIVLADYTL-TYQKVIVKG-G-LNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEKI---ASSQGMLVVSDV 240 (419)
T ss_pred ceEEEECCCC-CceeEEccC-C-CeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEEE---ecCCCcEEeeEE
Confidence 4555556543 333444333 3 778899999 9985 554443 35688889887765443 224455667889
Q ss_pred cCCCCcEEEEEcCC--CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC--eEEEEEcC
Q 009266 159 EPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIR 234 (538)
Q Consensus 159 ~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~iwd~~ 234 (538)
+|+|.+++++.+.+ ..|.++++.++...+... .. .......|+|++..++++....+ .|.++++.
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~-~~----------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN-YP----------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc-CC----------CccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 99997676666555 458888887776443222 11 11234579998545555554444 56777776
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC--------C--eEEEeeccCC
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--------E--FIYLFTQDMG 292 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--------~--~i~~~d~~~~ 292 (538)
+++.... ...+. ....|+|+|++|+.... + .|++.++.++
T Consensus 310 ~g~~~rl--------------t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 310 SGSVEQV--------------VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCCeEeC--------------ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 6542110 11111 12489999998876652 2 4667776553
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=4e-08 Score=93.16 Aligned_cols=200 Identities=13% Similarity=0.117 Sum_probs=119.9
Q ss_pred CcEEEEEcCCCCcEEEEEcC---CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC--C
Q 009266 152 RAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--E 226 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g 226 (538)
.+....|+|++.++++..+. ...|.++++.+++....... ........|+|++..++++.+.+ .
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-----------~g~~~~~~~SPDG~~la~~~~~~g~~ 257 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-----------QGMLVVSDVSKDGSKLLLTMAPKGQP 257 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-----------CCcEEeeEECCCCCEEEEEEccCCCc
Confidence 67789999999643454333 35699999988876554431 11345678999855555555544 4
Q ss_pred eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC----eEEEeeccCCCCCCCCCCCC
Q 009266 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 227 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~----~i~~~d~~~~~~~~~~~~~~ 302 (538)
.|.++++..++... +. .+........|+|+|+.|+..++. .|+++++.++...
T Consensus 258 ~Iy~~dl~~g~~~~---------------LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~------- 314 (419)
T PRK04043 258 DIYLYDTNTKTLTQ---------------IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE------- 314 (419)
T ss_pred EEEEEECCCCcEEE---------------cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-------
Confidence 67777876654211 11 111122345799999988777632 5888887654210
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC---------CeEEEeecc
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---------GRIFIWKKK 373 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d---------g~i~iwd~~ 373 (538)
..++.+. . ...| ||+|++|+..+.. ..|++.++.
T Consensus 315 ------------------------------rlt~~g~--~----~~~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 315 ------------------------------QVVFHGK--N----NSSV-STYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred ------------------------------eCccCCC--c----CceE-CCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 0111111 1 1256 9999988865543 368888988
Q ss_pred CcceeEEeecCcceeeEEeecCCCCeEEEeecC-C--ceEEecCCCCcccccCc
Q 009266 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIE-S--DIKILTPNAADRATLPT 424 (538)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g--~v~vw~~~~~~~~~~~~ 424 (538)
++.. ..+... .......|+|+|+.|+..... + .|.+.++.......++.
T Consensus 358 ~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 358 SDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 7764 344332 233468999999977665433 2 35566666654444443
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.13 E-value=2.8e-07 Score=81.72 Aligned_cols=226 Identities=17% Similarity=0.172 Sum_probs=134.1
Q ss_pred EEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEe-ecCCCceEEEEeCCCcEEEeecccCceeee
Q 009266 66 TVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIM-PFTDDRSIVTCAADGQVRHAQILERGGVET 143 (538)
Q Consensus 66 ~~~~s~-~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 143 (538)
+++|.+ ++.++++--..+.|..|+..++....... . ....+++. + + ..|+.+... .+.++++.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~--~~~G~~~~~~--~-g~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--P--GPNGMAFDRP--D-GRLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--S--SEEEEEEECT--T-SEEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--C--CCceEEEEcc--C-CEEEEEEcC-ceEEEecCCCcEEEE
Confidence 578888 77777887788999999998876543221 1 17777887 4 5 455555554 455668887755443
Q ss_pred eec--cc-cCCCcEEEEEcCCCCcEEEEEcCC--------CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 144 KLL--GK-HQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 144 ~~~--~~-~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
... .. .....+.+++.|+| ++.++.... |.|..++.. ++...... .....+.|+|+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----------~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----------GLGFPNGIAFS 142 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----------EESSEEEEEEE
T ss_pred eeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEec-----------CcccccceEEC
Confidence 333 12 34568889999999 566655433 345555555 33332222 11135677777
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCC
Q 009266 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (538)
|++..++++-+..+.|..|++..... .+... -.++++.
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~------------------------~~~~~----------------~~~~~~~-- 180 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGG------------------------ELSNR----------------RVFIDFP-- 180 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTC------------------------CEEEE----------------EEEEE-S--
T ss_pred CcchheeecccccceeEEEecccccc------------------------ceeee----------------eeEEEcC--
Confidence 77333444555566666666543210 00000 0001110
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
.... ..-.+++ ..+|++.++....+.|.+++.
T Consensus 181 ---------------------------------------------~~~g--~pDG~~v-D~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 181 ---------------------------------------------GGPG--YPDGLAV-DSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ---------------------------------------------SSSC--EEEEEEE-BTTS-EEEEEETTTEEEEEET
T ss_pred ---------------------------------------------CCCc--CCCcceE-cCCCCEEEEEcCCCEEEEECC
Confidence 0001 2556777 899998888778899999997
Q ss_pred cCcceeEEeecCcceeeEEee-cCCCCeEEEe
Q 009266 373 KGGELIRVIEADRHVVNCIEP-HPHSTVLASS 403 (538)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~ 403 (538)
. |+++..+......+++++| .++.+.|+..
T Consensus 213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 213 D-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp T-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred C-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 6 9998888876568999999 4666655443
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.12 E-value=1.2e-07 Score=90.36 Aligned_cols=316 Identities=12% Similarity=0.095 Sum_probs=175.6
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeee-EEcCC-cCcEE-EEEEcCCCCEEEEecCCCeEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYA-KLDKH-RGCVN-TVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h-~~~v~-~~~~s~~g~~l~t~~~d~~i~ 86 (538)
+.++++++.+|.|.-+|..+|+.+-+.. +.... .+... ...+. .+.. .+..|+.++.++.|.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~-------------~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ 133 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVD-------------LSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVY 133 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEc-------------CCCcccccccccccccccccEE--ECCEEEEEcCCCEEE
Confidence 5577888888899999999888752200 00000 00000 00111 1111 355677788889999
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC---CcEEEEEcCCCC
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSP 163 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~ 163 (538)
.+|..+|+.+.+... . ..+.+ +|...+..++.+..++.|..+|..+++.+.......... ....-... .+
T Consensus 134 ald~~tG~~~W~~~~-~-~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~- 206 (394)
T PRK11138 134 ALNAEDGEVAWQTKV-A-GEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG- 206 (394)
T ss_pred EEECCCCCCcccccC-C-Cceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-
Confidence 999999998877632 2 22222 111134567777888999999999998776533321100 00011111 22
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC--CCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
.++.++.++.+..++..+++.+............ .......+..+| . +..+++++.+|.+..+|+.+++..-.
T Consensus 207 -~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~---~~~~~~~~~~sP~v~-~~~vy~~~~~g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 207 -GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT---EIDRLVDVDTTPVVV-GGVVYALAYNGNLVALDLRSGQIVWK 281 (394)
T ss_pred -EEEEEcCCCEEEEEEccCChhhheeccccCCCcc---chhcccccCCCcEEE-CCEEEEEEcCCeEEEEECCCCCEEEe
Confidence 4667778899999999999877655432110000 000000111111 1 23566677889999999998864332
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
..++ ....+.. ..+++++...++.++.++..++.......
T Consensus 282 ~~~~-----------------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~---------------------- 321 (394)
T PRK11138 282 REYG-----------------SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQS---------------------- 321 (394)
T ss_pred ecCC-----------------CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEccc----------------------
Confidence 1110 0111122 23445555557789999987764322110
Q ss_pred CCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeE-EeecCCCCeE
Q 009266 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNC-IEPHPHSTVL 400 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l 400 (538)
.+.... ..+... .+.+|+.++.+|.|++++..+|+.+...+.....+.+ ..+ .+..|
T Consensus 322 -------------~~~~~~----~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l 379 (394)
T PRK11138 322 -------------DLLHRL----LTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKL 379 (394)
T ss_pred -------------ccCCCc----ccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEE
Confidence 000000 111111 2457788889999999999999998777654333322 222 24578
Q ss_pred EEeecCCceEEecC
Q 009266 401 ASSGIESDIKILTP 414 (538)
Q Consensus 401 ~s~~~dg~v~vw~~ 414 (538)
+.++.+|.|+.+++
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88899999988764
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.11 E-value=1.4e-07 Score=82.32 Aligned_cols=240 Identities=19% Similarity=0.177 Sum_probs=153.6
Q ss_pred CCCCCCceEEeeccCCc-eEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEe----
Q 009266 5 SNNNNNKRARTSVDKAL-VDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG---- 79 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~-v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~---- 79 (538)
..|..+..++.+-+=|+ ..+||..+|+.++. +.-..-+.|.|| -.|||+|++|.|.
T Consensus 12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-------------~~a~~gRHFyGH------g~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-------------LWAPPGRHFYGH------GVFSPDGRLLYTTENDY 72 (305)
T ss_pred eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-------------EcCCCCCEEecC------EEEcCCCCEEEEecccc
Confidence 34445666666665554 58899999988643 111334556666 4699999999986
Q ss_pred -cCCCeEEEEECC-CCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC------------------CCcEEEeecccCc
Q 009266 80 -SDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA------------------DGQVRHAQILERG 139 (538)
Q Consensus 80 -~~d~~i~iw~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~------------------dg~v~vwd~~~~~ 139 (538)
...|.|-|||.. +-+.+..+ ..|.-.-..|.+.| +|+.|+++.. +..+.+.|..+++
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~p--DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMP--DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcC--CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence 345899999998 44455555 66766778889999 9988887642 2345555667777
Q ss_pred eeeeeec--cccCCCcEEEEEcCCCCcEEEEEcCCC-------cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 140 GVETKLL--GKHQGRAHKLAIEPGSPHVFYTCGEDG-------LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 140 ~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
.+....+ .-|...|+.|++.++| ..++..-..| .|-++ +.++.+..+...... .......+-+|+
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~--~~g~~~~~~~~p~~~---~~~l~~Y~gSIa 223 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALH--RRGGALRLLPAPEEQ---WRRLNGYIGSIA 223 (305)
T ss_pred eeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEE--cCCCcceeccCChHH---HHhhCCceEEEE
Confidence 6666556 4477889999999998 3433332222 23333 333333333221110 001234789999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeecc
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (538)
+++++..+.+|+-..+.+.+||..++++..... -..+..++..+++ ++++.+.|.+......
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----------------l~D~cGva~~~~~-f~~ssG~G~~~~~~~~ 285 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----------------LPDACGVAPTDDG-FLVSSGQGQLIRLSPD 285 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----------------cCceeeeeecCCc-eEEeCCCccEEEccCc
Confidence 999844455666678899999999987654311 2346677777777 7777777775554433
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.09 E-value=2.3e-07 Score=78.31 Aligned_cols=235 Identities=11% Similarity=0.038 Sum_probs=130.9
Q ss_pred EEEeecCCCceEEEEeCCCcEEEeecccCc--eeeeee-ccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee
Q 009266 110 AKIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKL-LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (538)
Q Consensus 110 l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 186 (538)
++.+. +|+.||..- |..|.|-..+..- .+.+.. .+...-.-+.++|+|++ .+||.+...|+|++||+.....
T Consensus 3 ~~~~~--~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l- 77 (282)
T PF15492_consen 3 LALSS--DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL- 77 (282)
T ss_pred eeecC--CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccccee-
Confidence 45555 777776654 4555555443221 111111 22222345789999999 7999999999999999986433
Q ss_pred eeeeecccCCCCCcceeeeeEEEEEcCCC-----CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCc
Q 009266 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRN-----ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (538)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (538)
..+..... ..+ .....|..+.|.+-. ...|++-...|.++-|-+..+...+. .......+..+..
T Consensus 78 f~I~p~~~--~~~-d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y-------~e~hsfsf~~~yp 147 (282)
T PF15492_consen 78 FVIPPAMS--FPG-DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY-------QENHSFSFSSHYP 147 (282)
T ss_pred EEcCcccc--cCC-ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc-------eeeEEEEecccCC
Confidence 33332111 111 123356667665431 23566677788888887643321000 0000112233446
Q ss_pred cceEEEEEcCCCCEEEEEcCC-e-----------EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCc
Q 009266 262 VGITGLAFSDQSELLVSYNDE-F-----------IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (538)
Q Consensus 262 ~~i~~~~~s~~~~~l~~~~~~-~-----------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
..|.++.++|..++|++++.. . +..|.+-.
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-------------------------------------- 189 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-------------------------------------- 189 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC--------------------------------------
Confidence 789999999998888777621 1 12222111
Q ss_pred ccCCceeeccccceeeeEEEEecCCCcEEEEeccCC------eEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEe
Q 009266 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
+ +|..+.+. ...++ +..+|.+-+.+...........|..|..||+|++||+.
T Consensus 190 --------~-------------~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i 247 (282)
T PF15492_consen 190 --------D-------------SPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI 247 (282)
T ss_pred --------C-------------CCcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence 1 12211111 11111 11234433322222222245689999999999999999
Q ss_pred ecCCceEEecCCCCcc
Q 009266 404 GIESDIKILTPNAADR 419 (538)
Q Consensus 404 ~~dg~v~vw~~~~~~~ 419 (538)
..+|.|.+|.+-+-.+
T Consensus 248 h~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 248 HFSGSLSLWEIPSLRL 263 (282)
T ss_pred EcCCeEEEEecCcchh
Confidence 9999999999876544
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=2.3e-09 Score=90.56 Aligned_cols=246 Identities=14% Similarity=0.093 Sum_probs=145.1
Q ss_pred CCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce---eeeeeccccC------------CCcEEEEEcC-CCCcEE
Q 009266 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG---VETKLLGKHQ------------GRAHKLAIEP-GSPHVF 166 (538)
Q Consensus 103 ~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~~~~~------------~~v~~~~~~~-~~~~~l 166 (538)
....|+++.|.. .|.+|++|...|.|.++.-..... .....+++|. ..|..|.|.. .+...+
T Consensus 25 ead~ItaVefd~--tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 25 EADKITAVEFDE--TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceeeEEEecc--ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 345799999998 899999999999999998654331 1111244443 3477777764 445567
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE------EEEcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA------IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
+..+.+.+|++|.+............-.... .....+++++ -..+.. ..++++. -
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~-~~~~~g~~~s~~~l~lprls~h--d~iiaa~--------p-------- 163 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSF-HSPMGGPLTSTKELLLPRLSEH--DEIIAAK--------P-------- 163 (460)
T ss_pred EEecCCceeeeeeeecccchhhhcccccccc-ccccCCCcCCHHHhhccccccc--ceEEEec--------c--------
Confidence 7888999999999886543221110000000 0000001111 011111 0111110 0
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
.+.....|...|.++.|+.+.+.++++.+=+|.+|++.-......
T Consensus 164 ------------~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFn----------------------- 208 (460)
T COG5170 164 ------------CRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFN----------------------- 208 (460)
T ss_pred ------------ceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceE-----------------------
Confidence 011223467789999999999999998888999999865321110
Q ss_pred CCCCCCCCcccCCceeecccc---ceeeeEEEEecCCC-cEEEEeccCCeEEEeeccCccee------E--Ee-------
Q 009266 321 SPSTANTDVRIAPQVYKGHRN---CVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELI------R--VI------- 381 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~s~~~-~~l~~gs~dg~i~iwd~~~~~~~------~--~~------- 381 (538)
+.-++.|.. ..-|++..| +|.. ..+.-.+..|.|++-|++...+. . ++
T Consensus 209 ------------IVDiKP~nmeeLteVItSaeF-hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~f 275 (460)
T COG5170 209 ------------IVDIKPHNMEELTEVITSAEF-HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDF 275 (460)
T ss_pred ------------EEeccCccHHHHHHHHhhccc-CHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchh
Confidence 111111211 011667777 7754 45566777899999998733211 1 11
Q ss_pred -ecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCc
Q 009266 382 -EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 382 -~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 418 (538)
..-...|..+.|+++|+++++-+. -+|+||++...+
T Consensus 276 f~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 276 FEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred HHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 122256888999999999998765 689999998654
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.01 E-value=1.3e-06 Score=83.31 Aligned_cols=309 Identities=11% Similarity=0.013 Sum_probs=174.9
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeE------EEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeec
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF------QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL 146 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~------~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 146 (538)
+..|++++.++.|.-+|..+|+.+.+........+. .+.-.|...+..++.++.+|.+..+|..+++.+....+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 567777888899999999999987765322111010 00111111456777888899999999999988766433
Q ss_pred cccCCCcEE-EEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccC-CCCCcceeeeeEEEEEcCCCCcEEEEEeC
Q 009266 147 GKHQGRAHK-LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 147 ~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 224 (538)
.+. +.+ ..+. ++ .++.+..++.|..+|..+++.+..+...... ...+ . .+-.... + .++.++.
T Consensus 149 ~~~---~~ssP~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~--~----~sP~v~~--~-~v~~~~~ 213 (394)
T PRK11138 149 AGE---ALSRPVVS-DG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG--E----SAPATAF--G-GAIVGGD 213 (394)
T ss_pred CCc---eecCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC--C----CCCEEEC--C-EEEEEcC
Confidence 321 111 1121 23 5667788899999999999988777542110 0000 0 0111111 2 4666778
Q ss_pred CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC---CCCEEEEEcCCeEEEeeccCCCCCCCCCCC
Q 009266 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYNDEFIYLFTQDMGLGPNPPPSS 301 (538)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~ 301 (538)
+|.+..++..+++..-......+...... .....+..+| ++.+++++.++.++.++..++.......
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~--------~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-- 283 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEI--------DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-- 283 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccch--------hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec--
Confidence 89999999988875443222221100000 0000111112 4555555557789999988764322100
Q ss_pred CccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEe
Q 009266 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (538)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~ 381 (538)
+.. ...+.. .+..|+.++.+|.|+.++..+|+.+-..
T Consensus 284 ----------------------------------~~~------~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 284 ----------------------------------YGS------VNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred ----------------------------------CCC------ccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 000 111122 3556777788999999999998776433
Q ss_pred ecCc-ceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCc-cceeeee-cc-cCceeeeccCCCCCceee
Q 009266 382 EADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT-NIEQVLI-PD-HIRWFALGDDDDGDYYFY 451 (538)
Q Consensus 382 ~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~-~~-~~~~l~s~~~d~~~~~~~ 451 (538)
..-. ....+... .+.+|+.++.+|.|++.+..+++...... ....+.. +. .++.|+.++.+|..|.|.
T Consensus 321 ~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 321 SDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred cccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 2111 11122222 25677888999999999999887632211 1122222 22 556788888888776653
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.98 E-value=5.4e-09 Score=86.12 Aligned_cols=150 Identities=17% Similarity=0.255 Sum_probs=97.2
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEc-CCcCcEEEEEEcCCCCEEEEecC-----C
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSD-----D 82 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~t~~~-----d 82 (538)
.+..++++..||.+.+++.+. .++ ..+++. .|.+.. +.++...+..|.++.- -
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~--~~~------------------~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK--DLA------------------LMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred cCCceEecCCCceEEEEechH--HHh------------------hhhhccccccccc-ccceeecccEEecCCcceEeec
Confidence 356789999999999998874 110 001111 122211 1122223444444321 2
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
+..++|+++..+.+... ......|.+++-+|. ....+++|+.+|.+.+|+++.... +...+..|..++..+.|+|..
T Consensus 159 d~~~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPS-KKALDAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred cceeeeccccccccccc-ccccccchhhhCCcc-cccEEEEecCCCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCC
Confidence 34566766543332222 112234999999992 455677788899999999987743 334578899999999999999
Q ss_pred CcEEEEEcCCCcEEEEecCC
Q 009266 163 PHVFYTCGEDGLVQHFDLRT 182 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~ 182 (538)
+..|++++.||.+..||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 88999999999999999874
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-07 Score=83.57 Aligned_cols=96 Identities=13% Similarity=0.177 Sum_probs=76.2
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|+..+..+-+... ++.+|...|..|+|+|+ +..++..++.+..|+|.++.+...+.. +..+ ..+.+++|.-+..+
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~-~~GLl~~asl~nkiki~dlet~~~vss--y~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPF-NEGLLGLASLGNKIKIMDLETSCVVSS--YIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCcc-ccceeeeeccCceEEEEecccceeeeh--eecc-CCceeeeeccCCcc
Confidence 4444444444433 55788889999999993 333788899999999999998877765 4445 78999999998889
Q ss_pred EEEEEcCCCcEEEEecCCCCe
Q 009266 165 VFYTCGEDGLVQHFDLRTGAA 185 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~ 185 (538)
+|++|-..|.|.|||++..+.
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eeEEeccCceEEEEEccCCCc
Confidence 999999999999999997653
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=3.4e-09 Score=90.83 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=116.2
Q ss_pred EEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC-----e
Q 009266 111 KIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-----A 185 (538)
Q Consensus 111 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~ 185 (538)
+|+-..-+.. ++.+.+..|-+-++.++.... +. ..+.|.++.|...+ +++..|...|.|..+|++.+. +
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qs---f~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS---FQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccc---cc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcc
Confidence 5554223444 566667788888888775532 33 56778899999877 689999999999999999762 2
Q ss_pred eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceE
Q 009266 186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT 265 (538)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (538)
...+. |...|+++..-...+++|++.+.+|+|++||+|..+.
T Consensus 292 a~rly-----------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--------------------------- 333 (425)
T KOG2695|consen 292 AQRLY-----------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--------------------------- 333 (425)
T ss_pred eEEEE-----------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc---------------------------
Confidence 22222 4556777766552356778888888888888876431
Q ss_pred EEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceee
Q 009266 266 GLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (538)
Q Consensus 266 ~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (538)
...++++.||.+...-
T Consensus 334 ----------------------------------------------------------------~~~V~qYeGHvN~~a~ 349 (425)
T KOG2695|consen 334 ----------------------------------------------------------------KKSVMQYEGHVNLSAY 349 (425)
T ss_pred ----------------------------------------------------------------ccceeeeecccccccc
Confidence 1124566677655333
Q ss_pred eEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCc
Q 009266 346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (538)
Q Consensus 346 ~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~ 385 (538)
.-+.. .+....|++++.|...|||.+..|.++.+++...
T Consensus 350 l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 350 LPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccc-ccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 33333 6777889999999999999999999998887443
No 306
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=9.5e-09 Score=96.93 Aligned_cols=221 Identities=14% Similarity=0.134 Sum_probs=143.1
Q ss_pred eeEEcCCcCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 54 YAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
...+.||...|+.+.|.|.. ..||+++.|..+..|++.+.....-....-......|+|+. ....+++.+....|++
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny--k~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY--KDPNVLASSHGNDIFV 184 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc--cCcchhhhccCCceEE
Confidence 45678999999999999964 68999999999999999876543322234445677889987 4455555566688999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
|+++.+.... ..+++|...|+.+.|..---..+.+++.|++|+.|+......-...... ...+|..-++.
T Consensus 185 wd~r~gs~pl-~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt---------t~~piw~~r~~ 254 (1081)
T KOG0309|consen 185 WDLRKGSTPL-CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT---------TNFPIWRGRYL 254 (1081)
T ss_pred EeccCCCcce-EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc---------ccCcceecccc
Confidence 9998776544 3477899999999998755457899999999999998755432222211 22345555666
Q ss_pred CCCCcEEEEEe-CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC----------EEEEEcC
Q 009266 213 PRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE----------LLVSYND 281 (538)
Q Consensus 213 ~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~----------~l~~~~~ 281 (538)
|-+.-+++--. .+..|.+++.++..+... ......+...+.+|...|..+.|-..+. .|++-+.
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n-----~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWN-----VFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhc-----cccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence 65322222211 122444444443322110 0011134555666777777666654332 5777774
Q ss_pred -CeEEEeeccC
Q 009266 282 -EFIYLFTQDM 291 (538)
Q Consensus 282 -~~i~~~d~~~ 291 (538)
..+++|-+..
T Consensus 330 D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 330 DQTLRLWPIDS 340 (1081)
T ss_pred CCceEeeeccH
Confidence 4899998865
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.92 E-value=5.2e-09 Score=62.27 Aligned_cols=38 Identities=29% Similarity=0.653 Sum_probs=35.8
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
++++++++|.+.|++|+|+|++.+|++|+.|+.|++|+
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35688999999999999999999999999999999997
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.92 E-value=2.5e-06 Score=74.57 Aligned_cols=206 Identities=14% Similarity=0.120 Sum_probs=127.1
Q ss_pred EEEEEEcC-CCCEEEEecCCCe-EEEEECCCCceeeeeccCCCCC--eEEEEEeecCCCceEEEEe-----CCCcEEEee
Q 009266 64 VNTVSFNT-DGDILISGSDDRR-VILWDWKTERVKLSFHSGHNDN--VFQAKIMPFTDDRSIVTCA-----ADGQVRHAQ 134 (538)
Q Consensus 64 v~~~~~s~-~g~~l~t~~~d~~-i~iw~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~~~l~s~~-----~dg~v~vwd 134 (538)
...++.+| .+..++.+-.-|+ ..+||..+++.+..+. ...+. --.-+|+| +|++|++.= ..|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEE
Confidence 34577888 5566666665554 7889999998876663 22221 12468999 999999874 358999999
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEE------------------cCCCcEEEEecCCCCeeeeeeecccCC
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC------------------GEDGLVQHFDLRTGAATELFTCRPIDD 196 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (538)
.. ......-.+..|.-....+.+.|+++ .|+++ ..+..+.+.|..+++.+.+.......
T Consensus 84 ~~-~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~- 160 (305)
T PF07433_consen 84 AA-RGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL- 160 (305)
T ss_pred Cc-CCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc-
Confidence 98 22333334666666677889999995 44443 12345666677777776665432211
Q ss_pred CCCcceeeeeEEEEEcCCCCcEEEEEeCCCe-------EEEEEcCCccccCCCCCCCCCcccC-CCCccCCCccceEEEE
Q 009266 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEY-------TRLYDIRKYKWDGSTDFGQPADYFC-PPNLIGDEQVGITGLA 268 (538)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 268 (538)
+..+|+-+++.++ +..++..-..|. |-++.... +...+. +......-...+-+|+
T Consensus 161 -----~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~g~-----------~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 161 -----HQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRRGG-----------ALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred -----cccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcCCC-----------cceeccCChHHHHhhCCceEEEE
Confidence 3347888999987 444443322221 22222111 110000 1111122356899999
Q ss_pred EcCCCCEEEEEc--CCeEEEeeccCC
Q 009266 269 FSDQSELLVSYN--DEFIYLFTQDMG 292 (538)
Q Consensus 269 ~s~~~~~l~~~~--~~~i~~~d~~~~ 292 (538)
+++++.++++.+ .+.+.+|+..++
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCC
Confidence 999999888877 458999998875
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.5e-07 Score=90.10 Aligned_cols=184 Identities=14% Similarity=0.166 Sum_probs=128.0
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
.++++-|..+|.|++.+.+ |.. ++...|+.. ...|.+++|||.||+|.|-.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~----------------------~~~~~~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNP----------------------KTNFDHSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred cceeeeccccceEEEEecC-Ccc----------------------ccccccccc------ccCCceEEEecCCCcEEEee
Confidence 5678888888888888877 332 112223333 55799999999999999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeec---CCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
+.+.+...++ ....++.+|+++|. ...+.+++|+..| +.++.-.--.......+..-.++|.++.|.. +++
T Consensus 100 l~~~~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lI 173 (846)
T KOG2066|consen 100 LFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLI 173 (846)
T ss_pred ccCCccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEE
Confidence 9988876665 34568999999991 1257899999888 7776543222222223556678999999985 577
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
|-+...| |+|||+.+++.+..++....... .......+.|.+. ..|+.| ...+|+|..++.+
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQDE--DRLVIG-WGDSVKICSIKKR 235 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecCC--CeEEEe-cCCeEEEEEEecc
Confidence 7777766 89999999988777665442211 2223456888885 455555 4457999998843
No 310
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=2.5e-05 Score=65.20 Aligned_cols=145 Identities=17% Similarity=0.073 Sum_probs=94.3
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
..+++.|+..+.+.--|.++|.++- ..+- ..+|-+-+.- -|.+++.|...|.+++.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~W--------------------e~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIW--------------------EAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEe--------------------ehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 4567888888888888998888752 1111 2333333332 478899999999999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (538)
+.+|.....+.....-.+.. ...+ ++.++..++.|++.+..|..+..++.+.... .....+-++.|-. .-|+.+
T Consensus 80 ~~tGs~~w~f~~~~~vk~~a-~~d~--~~glIycgshd~~~yalD~~~~~cVykskcg--G~~f~sP~i~~g~-~sly~a 153 (354)
T KOG4649|consen 80 VKTGSQIWNFVILETVKVRA-QCDF--DGGLIYCGSHDGNFYALDPKTYGCVYKSKCG--GGTFVSPVIAPGD-GSLYAA 153 (354)
T ss_pred ecchhheeeeeehhhhccce-EEcC--CCceEEEecCCCcEEEecccccceEEecccC--CceeccceecCCC-ceEEEE
Confidence 99998777763322222222 2344 8899999999999999999998888763332 2323333445522 234555
Q ss_pred cCCCcEEEEecCCC
Q 009266 170 GEDGLVQHFDLRTG 183 (538)
Q Consensus 170 ~~dg~i~iwd~~~~ 183 (538)
...|.|.--..+..
T Consensus 154 ~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 154 ITAGAVLAVTKNPY 167 (354)
T ss_pred eccceEEEEccCCC
Confidence 55566665555544
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.87 E-value=1.4e-06 Score=77.06 Aligned_cols=234 Identities=16% Similarity=0.116 Sum_probs=134.8
Q ss_pred CCeEEEEECCCCceeeeeccCC-CCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 82 DRRVILWDWKTERVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
+|+|..||..+|+.+.+..... .....+. ..+ .+.++++++.++.|..|+..+++.+....+....... ....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEE--ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeec
Confidence 6889999999999888773211 1222222 233 5677888889999999999999887765553322222 1222
Q ss_pred CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
.+ .+++++.++.|+.+|+.+++.+............ ........+. +..++++...+.|..+|+++++...
T Consensus 76 ~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 76 GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEE
T ss_pred cc--ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEe---cCEEEEEeccCcEEEEecCCCcEEE
Confidence 23 4566667889999999999998874221111000 0011222333 4577788889999999999988644
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
......+... ........+.+-.+..++.++++..++.+..+++.++.
T Consensus 147 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~--------------------------- 194 (238)
T PF13360_consen 147 KYPVGEPRGS-----SPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGE--------------------------- 194 (238)
T ss_dssp EEESSTT-SS-------EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTE---------------------------
T ss_pred EeecCCCCCC-----cceeeecccccceEEECCEEEEEcCCCeEEEEECCCCC---------------------------
Confidence 4322111000 00000112223333335555555556654444887742
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeE
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~ 379 (538)
.+ ....... +..+ . .+.+..|++++.++.|..||+.+|+.+-
T Consensus 195 -----------~~--w~~~~~~--~~~~-~-~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 195 -----------KL--WSKPISG--IYSL-P-SVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -----------EE--EEECSS---ECEC-E-ECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -----------EE--EEecCCC--ccCC-c-eeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 11 1111111 2221 2 4567788887799999999999998764
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=4.8e-09 Score=62.42 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=37.0
Q ss_pred cceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
++++.++.+|.+.|++|+|+|++++|++++.|+.|+||+
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999996
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=2.2e-06 Score=75.80 Aligned_cols=229 Identities=16% Similarity=0.100 Sum_probs=130.6
Q ss_pred CCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 009266 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLS 98 (538)
Q Consensus 19 d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~ 98 (538)
+|+|..||..+|+.+-+ ..+..-.....+.. .+.+.+|++++.++.|..|+..+|+.+.+
T Consensus 2 ~g~l~~~d~~tG~~~W~-------------------~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~~W~ 61 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS-------------------YDLGPGIGGPVATA-VPDGGRVYVASGDGNLYALDAKTGKVLWR 61 (238)
T ss_dssp TSEEEEEETTTTEEEEE-------------------EECSSSCSSEEETE-EEETTEEEEEETTSEEEEEETTTSEEEEE
T ss_pred CCEEEEEECCCCCEEEE-------------------EECCCCCCCccceE-EEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 68899999998988632 11211112222222 23466777778899999999999998877
Q ss_pred eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee-eccccC-CCcEEEEEcCCCCcEEEEEcCCCcEE
Q 009266 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQ 176 (538)
Q Consensus 99 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~ 176 (538)
+.. ...+...... .+..+++++.++.|+.++..+++.+... ...... .....+.....+ ..++++...+.|.
T Consensus 62 ~~~--~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 62 FDL--PGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLV 135 (238)
T ss_dssp EEC--SSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEE
T ss_pred eec--cccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEE
Confidence 732 2222221222 4567777778889999999999887652 211111 111222222224 4677777789999
Q ss_pred EEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCc
Q 009266 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (538)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (538)
.+|+++|+.+...................+..-....+ + .++.++.++.+..+|+.+++..-.
T Consensus 136 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~~g~~~~~d~~tg~~~w~--------------- 198 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD-G-RVYVSSGDGRVVAVDLATGEKLWS--------------- 198 (238)
T ss_dssp EEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT-T-EEEEECCTSSEEEEETTTTEEEEE---------------
T ss_pred EEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC-C-EEEEEcCCCeEEEEECCCCCEEEE---------------
Confidence 99999999988776633211100000011122222223 4 666666667533349988763210
Q ss_pred cCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCC
Q 009266 257 IGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (538)
Q Consensus 257 ~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (538)
.. ...+..+ ..+.+..|++++ ++.|+.||+.+++
T Consensus 199 -~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 199 -KP-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EC-SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred -ec-CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 00 1112221 345555665555 7899999999864
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=9.6e-07 Score=85.47 Aligned_cols=220 Identities=14% Similarity=0.132 Sum_probs=135.4
Q ss_pred EEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC-----cEEEEecCCCCe
Q 009266 111 KIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAA 185 (538)
Q Consensus 111 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~ 185 (538)
+|++ .+..+|.|+.+|.|.+.+-. ......++.+...+...-+.-++..+|++.+.|+ .|+||++.....
T Consensus 30 c~~s--~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSS--STGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcC--CCceEEEeeccccEEEeccc---ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 4566 78899999999988877632 2221335566655333333444436778777664 499999875421
Q ss_pred ---eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCcc
Q 009266 186 ---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (538)
Q Consensus 186 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (538)
.+.+..+.....+....+.++.+++.+.+ -+.+|+|-.+|.|..+.-.-.+-.+. ..........
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgs-----------r~~~~~~~~~ 172 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGS-----------RQDYSHRGKE 172 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcccc-----------ceeeeccCCC
Confidence 11121112222122224567889999987 68999999999999886433221110 1122223467
Q ss_pred ceEEEEEcCCCCE-EEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccc
Q 009266 263 GITGLAFSDQSEL-LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (538)
Q Consensus 263 ~i~~~~~s~~~~~-l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (538)
+|+++++..+++. +.+++...|.+|.+... .+..+.+..|..
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr-------------------------------------~p~~~~ld~~G~ 215 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGR-------------------------------------TPSLKVLDNNGI 215 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCC-------------------------------------CcceeeeccCCc
Confidence 9999999998887 55666778999998742 112334555544
Q ss_pred ceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee-cCccee
Q 009266 342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVV 388 (538)
Q Consensus 342 ~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~-~h~~~v 388 (538)
. +.+..| ++....+++++. .-|.+|+....++-..+. +|....
T Consensus 216 ~--lnCss~-~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 216 S--LNCSSF-SDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred c--ceeeec-CCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence 4 778877 554443555543 468999987766666676 665443
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=6.3e-06 Score=73.14 Aligned_cols=220 Identities=15% Similarity=0.158 Sum_probs=135.3
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEc-CCCCEEEEecCCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN-TDGDILISGSDDR 83 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~t~~~d~ 83 (538)
|.+..+.++++....+.|..|+..+++.. .+.... ...+++. +++.++++. ..
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----------------------~~~~~~--~~G~~~~~~~g~l~v~~-~~- 60 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVE----------------------VIDLPG--PNGMAFDRPDGRLYVAD-SG- 60 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEE----------------------EEESSS--EEEEEEECTTSEEEEEE-TT-
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEE----------------------EEecCC--CceEEEEccCCEEEEEE-cC-
Confidence 33447777888888899999999877643 122111 6777777 676655554 43
Q ss_pred eEEEEECCCCceeeeecc---C-CCCCeEEEEEeecCCCceEEEEeCC--------CcEEEeecccCceeeeeeccccCC
Q 009266 84 RVILWDWKTERVKLSFHS---G-HNDNVFQAKIMPFTDDRSIVTCAAD--------GQVRHAQILERGGVETKLLGKHQG 151 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~---~-~~~~v~~l~~~~~~~~~~l~s~~~d--------g~v~vwd~~~~~~~~~~~~~~~~~ 151 (538)
.+.++++.+++....... . .....+.+++.| +|.+.++.... |.|..++.. ++. .. +...-.
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~--~~~~~~ 134 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TV--VADGLG 134 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EE--EEEEES
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC-CeE-EE--EecCcc
Confidence 466669988865333311 1 345788999999 99977776543 445556655 232 21 222345
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe-ee-eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEE
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 229 (538)
..+.|+|+|+++.++++-+..+.|..|++..... +. ......... .....-.+++..+ +++.++....+.|.
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~g~pDG~~vD~~-G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-----GPGYPDGLAVDSD-GNLWVADWGGGRIV 208 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-----SSCEEEEEEEBTT-S-EEEEEETTTEEE
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-----CCcCCCcceEcCC-CCEEEEEcCCCEEE
Confidence 6789999999965666788889999999864332 11 111111100 1124678999997 78888888899999
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEc-CCCCEEEE
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVS 278 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~ 278 (538)
+++.. +++...+.+ . ...+++++|. ++.+.|..
T Consensus 209 ~~~p~-G~~~~~i~~--------------p-~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 209 VFDPD-GKLLREIEL--------------P-VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEETT-SCEEEEEE---------------S-SSSEEEEEEESTTSSEEEE
T ss_pred EECCC-ccEEEEEcC--------------C-CCCEEEEEEECCCCCEEEE
Confidence 99987 553322111 1 2368999994 56554443
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.82 E-value=1.6e-07 Score=91.15 Aligned_cols=186 Identities=13% Similarity=0.146 Sum_probs=136.0
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
++..++.|+....+...|+.+++.. +...-....|+-|+. ++++|.+|...|+|.+-
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~---------------------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET---------------------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLR 202 (1118)
T ss_pred CCcceeecchhhheeeeecccceee---------------------eeeeccCCceEEEEe--cCcEEEeecccceEEee
Confidence 3455666766667777787766553 222222334666665 48999999999999999
Q ss_pred ECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC---------CCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---------DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
|..+.+.++++ .+|.+.|..+.. .|++|++|+. |.-|+|||++..+.+.. +.-+.++ .-+.|+
T Consensus 203 D~~s~~~iht~-~aHs~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~P-~flrf~ 274 (1118)
T KOG1275|consen 203 DPNSFETIHTF-DAHSGSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYGP-QFLRFH 274 (1118)
T ss_pred cCCcCceeeee-eccccceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCC--cccccCc-hhhhhc
Confidence 99999999999 899999987666 6789999985 45689999998777655 3334333 567889
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCC-e-eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGA-A-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
|.-...+++++..|...+-|..+-. + ...+..++ ....+.++.+++. +..++.|..+|.|.+|.-+
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p--------~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP--------NGSGISAFDISSN-GDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEcc--------CCCcceeEEecCC-CceEEEecccCcEeeecCC
Confidence 9877788999999999999843221 1 12222221 2235899999997 8999999999999999833
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2.1e-08 Score=86.18 Aligned_cols=162 Identities=16% Similarity=0.210 Sum_probs=117.1
Q ss_pred EEEcCC--CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce---e
Q 009266 67 VSFNTD--GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG---V 141 (538)
Q Consensus 67 ~~~s~~--g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~---~ 141 (538)
++|+-+ |-. ++.+.+..|-|-++.+|.. ..| ...+.|.++.|.. .+++++.|+..|.|.+.|++.+.. -
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-ccc--ccchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCc
Confidence 366532 334 4455567789999998765 333 3667899999997 889999999999999999986521 1
Q ss_pred eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe---eeeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
+.. .-.|...|+++.......+.|++.+.+|+|++||++.-++ +.++..| .....-.-+...+. ...
T Consensus 291 ~a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH--------vN~~a~l~~~v~~e-eg~ 360 (425)
T KOG2695|consen 291 CAQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH--------VNLSAYLPAHVKEE-EGS 360 (425)
T ss_pred ceE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc--------cccccccccccccc-cce
Confidence 112 2348899999988773336788899999999999997776 5555543 23333344555666 457
Q ss_pred EEEEeCCCeEEEEEcCCccccCCCCC
Q 009266 219 FAVAGSDEYTRLYDIRKYKWDGSTDF 244 (538)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (538)
+++++.|...|||.++.+.+.....+
T Consensus 361 I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 361 IFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEccCeeEEEEEecccCceeeccCC
Confidence 78899999999999999887665443
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.79 E-value=1.9e-06 Score=82.54 Aligned_cols=334 Identities=7% Similarity=-0.033 Sum_probs=172.0
Q ss_pred EEeeccCCceEEeeeccCceecc--ccchhhcccccceEEe-eeeeE-E-cC--CcCcEEEEEEc-----CCCCEEEEec
Q 009266 13 ARTSVDKALVDVWLRELGQLSTR--NFALRRRASEDLVLRL-GIYAK-L-DK--HRGCVNTVSFN-----TDGDILISGS 80 (538)
Q Consensus 13 l~t~~~d~~v~iwd~~~g~~~~~--~~~~~~~~~~~~~~~~-~~~~~-~-~~--h~~~v~~~~~s-----~~g~~l~t~~ 80 (538)
+.+|+..|.|+|+=+.+++.+.. +|.+-...+....-.- +++.. . .+ .-+......+| .+|+||..-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 78899999999999999988865 4554332222221110 01100 0 00 01111222222 3688888765
Q ss_pred C-CCeEEEEECCCCceeeeeccCCCCCeEEEEEe--e--------------c-CCCceEEEE-eCCCcEEEeecccCcee
Q 009266 81 D-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIM--P--------------F-TDDRSIVTC-AADGQVRHAQILERGGV 141 (538)
Q Consensus 81 ~-d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~--~--------------~-~~~~~l~s~-~~dg~v~vwd~~~~~~~ 141 (538)
. ...|..-++...++-..+.......+..++|- | . .+|+.+... -..+.+.+.|..+.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 45566666665544322222233333333332 2 0 044433222 22356667777665544
Q ss_pred eeeeccccCCCcEEEEEcCCCCcEEEEEcCC----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
......+ ....+.++|+++ ++++.+.+ .++...+......+..+.... ..++.++ |+
T Consensus 229 ~qV~Vdg---npd~v~~spdGk-~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--------------iea~vkd-GK 289 (635)
T PRK02888 229 WQVMVDG---NLDNVDTDYDGK-YAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--------------IEEAVKA-GK 289 (635)
T ss_pred EEEEeCC---CcccceECCCCC-EEEEeccCcccCcceeeeccccCceEEEEchHH--------------HHHhhhC-CC
Confidence 4433322 456678899884 55555421 233333332222221111100 0133444 45
Q ss_pred EEEEEeCCCeEEEEEcCC-----ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeecc
Q 009266 218 LFAVAGSDEYTRLYDIRK-----YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQD 290 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~ 290 (538)
+... .++.|.+.|.++ .++...+ .-......+.++|+|+++++++ ++.+.|+|+.
T Consensus 290 ~~~V--~gn~V~VID~~t~~~~~~~v~~yI----------------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 290 FKTI--GGSKVPVVDGRKAANAGSALTRYV----------------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred EEEE--CCCEEEEEECCccccCCcceEEEE----------------ECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 5554 357899999887 2221110 0134567899999999998887 5689999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
+.+....-... .+........--.+ -...+| +++|+...+-.-|..|..|
T Consensus 352 k~k~~~~~~~~--------------------------~~~~vvaevevGlG---PLHTaF-Dg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 352 KLDDLFDGKIK--------------------------PRDAVVAEPELGLG---PLHTAF-DGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred hhhhhhhccCC--------------------------ccceEEEeeccCCC---cceEEE-CCCCCEEEeEeecceeEEE
Confidence 74321100000 00000111111111 345667 8999888888899999999
Q ss_pred eccC----------cceeEEeecCccee-----eEEeecCCCCeEEEeecCCceEEec
Q 009266 371 KKKG----------GELIRVIEADRHVV-----NCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 371 d~~~----------~~~~~~~~~h~~~v-----~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
++.. ...+..+..|-.+. ..=.-.|+|++|++...=..=|+..
T Consensus 402 n~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~ 459 (635)
T PRK02888 402 NIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLP 459 (635)
T ss_pred ehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccC
Confidence 9876 23445554443322 2222468899998875433333333
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.78 E-value=9.8e-06 Score=79.27 Aligned_cols=213 Identities=14% Similarity=0.117 Sum_probs=113.2
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcE--EEEEEcCCCCEEEEecCCCeEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCV--NTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
+.+++.++.++.|.-.|..+|+.+-+... ......+...+ ..+++. ++..++.++.++.|.-
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~---------------~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~A 124 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDP---------------KLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVA 124 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCC---------------CCCccccccccccCCcEEc-cCCeEEEecCCCeEEE
Confidence 34566777778888888888876522100 00000000000 011111 2257777888999999
Q ss_pred EECCCCceeeeeccCCCC-CeEEEEEeecCCCceEEEEe---------CCCcEEEeecccCceeeeeeccccC-------
Q 009266 88 WDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCA---------ADGQVRHAQILERGGVETKLLGKHQ------- 150 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~l~s~~---------~dg~v~vwd~~~~~~~~~~~~~~~~------- 150 (538)
+|..+|+.+.++...... .-..+.-+|...+.+++.++ .++.|..+|..+++.+....+....
T Consensus 125 lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 125 LDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred EECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 999999998776322110 00111112211234455543 3678888999888876653332110
Q ss_pred -----------CCc-EEEEEcCCCCcEEEEEcCCC------------------cEEEEecCCCCeeeeeeecccCCC--C
Q 009266 151 -----------GRA-HKLAIEPGSPHVFYTCGEDG------------------LVQHFDLRTGAATELFTCRPIDDR--R 198 (538)
Q Consensus 151 -----------~~v-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~--~ 198 (538)
..+ ...++.+.+ .+++.++.++ .|.-+|+.+++.+..++....... .
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~ 283 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD 283 (488)
T ss_pred CCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence 001 123444444 4567776554 799999999999888764321100 0
Q ss_pred CcceeeeeEEEE-EcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 199 NYMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 199 ~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
.. ....+..+. ..-.....+++++.+|.+..+|.++++..-
T Consensus 284 ~~-s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 284 GP-NQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred cC-CCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 00 000111111 111001367888899999999999987543
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=5.5e-07 Score=86.44 Aligned_cols=191 Identities=13% Similarity=0.153 Sum_probs=130.3
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 140 (538)
...++|++++ +++|+-|+..|.|++++.+ +.. .+. ..|... .. .|.+++||+.||+|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~-~~~s~~------~~--~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTN-FDHSSS------IL--EGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccc-cccccc------cc--CCceEEEecCCCcEEEeeccCCcc
Confidence 4678888887 7899999999999999976 443 222 244433 33 899999999999999999888776
Q ss_pred eeeeeccccCCCcEEEEEcCC----CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 141 VETKLLGKHQGRAHKLAIEPG----SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
..... ...++.+++++|+ ..+.+++|+..| +.++.-+=........ .+...++|.++.|. |
T Consensus 106 ~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~--------l~~~eG~I~~i~W~---g 170 (846)
T KOG2066|consen 106 ITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV--------LSEGEGPIHSIKWR---G 170 (846)
T ss_pred ceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee--------eecCccceEEEEec---C
Confidence 55433 4467999999997 235789999988 7776532111111111 12256689999998 5
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeecc
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (538)
+++|-++..| |++||+.+.+......... .... .......+.|.++.+++ .|=.++|+|..++
T Consensus 171 ~lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~~R-------~e~fpphl~W~~~~~LV-IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 171 NLIAWANDDG-VKVYDTPTRQRLTNIPPPS--QSVR-------PELFPPHLHWQDEDRLV-IGWGDSVKICSIK 233 (846)
T ss_pred cEEEEecCCC-cEEEeccccceeeccCCCC--CCCC-------cccCCCceEecCCCeEE-EecCCeEEEEEEe
Confidence 7888887766 8999999987655533322 1111 12233457888776544 4445578888877
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=1.5e-07 Score=91.31 Aligned_cols=185 Identities=18% Similarity=0.263 Sum_probs=135.1
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
+..++-|+....+..+|+.+.+..... .-..+.|+-|+. +++++.+|...|+|.+-|..+.+.+.. +..|++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht--~~aHs~s 219 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHT--FDAHSGS 219 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeee-eccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeee--eeccccc
Confidence 456777777778888999888775554 333444666665 678999999999999999988777655 8999999
Q ss_pred cEEEEEcCCCCcEEEEEcC---------CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 153 AHKLAIEPGSPHVFYTCGE---------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
|..+... | ++|++||. |..|+|||++..+.+..+..+.. ..-+.|+|.-...+++++
T Consensus 220 iSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~-----------P~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 220 ISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG-----------PQFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred eeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccC-----------chhhhhcccccceEEEEe
Confidence 9877665 4 67888875 45689999999887766654332 255778887667899999
Q ss_pred CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeec
Q 009266 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (538)
..|...+-|..+.. .|.. ...........+..+.++++|..|+.+. .|.|.+|.-
T Consensus 286 ~sGq~q~vd~~~ls--------NP~~---~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLS--------NPPA---GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccceeeccccccC--------CCcc---ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 99999999844322 1100 0111112234599999999999999998 779999983
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=5.2e-07 Score=86.96 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=87.3
Q ss_pred CcEEEEEEcCCCCEEEEecC----CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 62 GCVNTVSFNTDGDILISGSD----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~----d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
+.-+-..|+|...+||.++. .|.|.||- .+|++.... ...-.+++++|+| ..-.|+.|=.-|.+.+|...+
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHp--e~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHP--EEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccCh--HHHHHhhccccceeEEEecCC
Confidence 33445689999999988754 57899985 667764433 1223467799999 777888888889999999876
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 182 (538)
.+.-. ....|+.+|..+.|+|+| ..|+++..-|.|.+|....
T Consensus 91 ~e~ht--v~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 91 TETHT--VVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceeee--eccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence 54433 256799999999999999 6899999999999998763
No 323
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.76 E-value=6.5e-06 Score=71.12 Aligned_cols=221 Identities=14% Similarity=0.188 Sum_probs=120.4
Q ss_pred eeEEcCCcCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 54 YAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
.+.+.+-...++.|+|.|+. .++++....+.|...+. +|+.+.++.-...+..-.|++.. ++.++++.-.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g--~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG--NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S--TTEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC--CCEEEEEEcCCCcEEE
Confidence 45566767779999999975 56667777888888886 47877776433346788899986 7777776666899999
Q ss_pred eecccCce------eeeeec---cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC---CCeeeeeeecccCCCCCc
Q 009266 133 AQILERGG------VETKLL---GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNY 200 (538)
Q Consensus 133 wd~~~~~~------~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~ 200 (538)
+.+..... .....+ ..+...+-.|+|.|.+. .|+.+-...-.+||.+.. ...+........... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~--~ 167 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD--K 167 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H--T
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccc--c
Confidence 98843211 111111 13455689999999884 455555555666776654 222211111110000 0
Q ss_pred ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc
Q 009266 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (538)
Q Consensus 201 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (538)
.....+.+++++|..+.+++.+.....|..+| .+++......+.... .-....-.+.-.|+|.++|++.++.-
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~------~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF------HGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG------GG-SS---SEEEEEE-TT--EEEEET
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc------cCcccccCCccEEEECCCCCEEEEcC
Confidence 02235789999999888999999999999999 444433221111100 00011234678999999998888877
Q ss_pred CCeEEEe
Q 009266 281 DEFIYLF 287 (538)
Q Consensus 281 ~~~i~~~ 287 (538)
-+..++|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 6666665
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.2e-06 Score=81.27 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=108.0
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
|...|.--++...+++|+.|+.-|.+.+|+-..++....-..+..+.+..+..++ +..++|.|+..|.|.++.+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhccC
Confidence 3445555566677999999999999999998777654333234455666777888 88888999999999999887643
Q ss_pred eeee----eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCC
Q 009266 140 GVET----KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (538)
Q Consensus 140 ~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 215 (538)
.... ..-..|...|++++|++++ ..|++|...|.|.+-.+.+. .......+.... ..+.|-.+.+..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~-----~ds~IVQlD~~q-- 180 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSR-QAFLSKSQEILS-----EDSEIVQLDYLQ-- 180 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechh-hhhccccceeec-----cCcceEEeeccc--
Confidence 2211 1123478899999999999 68999999999999888772 111111111111 233677777765
Q ss_pred CcEEEEEeCCCeEEEEEcCC
Q 009266 216 ANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 216 ~~~l~~~~~dg~v~iwd~~~ 235 (538)
+.+|++..... .++++..
T Consensus 181 ~~LLVStl~r~--~Lc~tE~ 198 (726)
T KOG3621|consen 181 SYLLVSTLTRC--ILCQTEA 198 (726)
T ss_pred ceehHhhhhhh--heeecch
Confidence 34555444322 3444443
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.74 E-value=1.3e-05 Score=80.89 Aligned_cols=265 Identities=13% Similarity=0.118 Sum_probs=147.1
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 140 (538)
...|.++.|..++..++.+...|.|.+-+.++..... ...-...|.+++|+| ++..++..+..+++.+-.. +-..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~vd~GI~aaswS~--Dee~l~liT~~~tll~mT~-~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGNVDNGISAASWSP--DEELLALITGRQTLLFMTK-DFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee--eeeccCceEEEeecC--CCcEEEEEeCCcEEEEEec-cccc
Confidence 3689999999999888888889999999887765422 133566899999999 9999999998887766432 1122
Q ss_pred eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
+..+.+. ..-.+.+ .++.++....=.-+.-..++....-+...........-...=++|.|--+ |.++|
T Consensus 143 i~E~~L~--------~d~~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fA 211 (1265)
T KOG1920|consen 143 IAEKPLD--------ADDERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFA 211 (1265)
T ss_pred hhccccc--------ccccccc--ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEE
Confidence 2211120 0111111 12333332211111111111100000000000000000112357899987 77888
Q ss_pred EE-----eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc----CCeEEEeeccC
Q 009266 221 VA-----GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDM 291 (538)
Q Consensus 221 ~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~~~i~~~d~~~ 291 (538)
+. ...+.|++|+.. +.+... .......-.+++|-|.|.++++.. ++.|.+|..+.
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~---------------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNST---------------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcc---------------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 73 233799999987 543211 111234456899999999998864 34688887553
Q ss_pred CCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE---eccCCeEE
Q 009266 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS---GSDCGRIF 368 (538)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~---gs~dg~i~ 368 (538)
-.. +.....+..... .+..++| +.++..||+ ......|+
T Consensus 276 L~h-----------------------------------g~f~l~~p~de~--~ve~L~W-ns~sdiLAv~~~~~e~~~v~ 317 (1265)
T KOG1920|consen 276 LRH-----------------------------------GEFVLPFPLDEK--EVEELAW-NSNSDILAVVTSNLENSLVQ 317 (1265)
T ss_pred ccc-----------------------------------cccccCCccccc--chheeee-cCCCCceeeeecccccceEE
Confidence 211 111111111122 2789999 899999987 55555699
Q ss_pred EeeccCcc--eeEEeecCcceeeEEeecCCC
Q 009266 369 IWKKKGGE--LIRVIEADRHVVNCIEPHPHS 397 (538)
Q Consensus 369 iwd~~~~~--~~~~~~~h~~~v~~~~~s~~~ 397 (538)
+|-+.+.. +.+.+....... +.|+|.-
T Consensus 318 lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~ 346 (1265)
T KOG1920|consen 318 LWTTGNYHWYLKQELQFSQKAL--LMWDPVT 346 (1265)
T ss_pred EEEecCeEEEEEEEEecccccc--ccccCCC
Confidence 99987653 223333222222 6677643
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.3e-06 Score=76.94 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=71.7
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcE
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
+..+.+.+|...|..|+|||..+ +|..++.+.+|+|.++.+..++..+ ..| ..+++++|... +..+|+.|-..|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDld-e~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLD-ERHVIYAGLQNGMV 260 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccC-CcceeEEeccCceE
Confidence 44556778899999999999766 7888999999999999998887777 455 78999999872 35677788889999
Q ss_pred EEeecccCcee
Q 009266 131 RHAQILERGGV 141 (538)
Q Consensus 131 ~vwd~~~~~~~ 141 (538)
.|||++.....
T Consensus 261 lvyD~R~~~~~ 271 (463)
T KOG1645|consen 261 LVYDMRQPEGP 271 (463)
T ss_pred EEEEccCCCch
Confidence 99999876543
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=1.9e-08 Score=93.58 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=134.8
Q ss_pred cCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCCcee-eeeccCCCCCeEEEEEeecCCCceEEEEe----CCCcEEEe
Q 009266 61 RGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCA----ADGQVRHA 133 (538)
Q Consensus 61 ~~~v~~~~~s~~g--~~l~t~~~d~~i~iw~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~~l~s~~----~dg~v~vw 133 (538)
...+.|+++..+. .+++.|..+|.|-+-.+....-. +.+..+|..+.++++|++. +...||.|- .+..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc-cHHHHHhhhhhhcccCCccce
Confidence 4567888887643 57889999999999887654432 5555789999999999984 667777774 35779999
Q ss_pred ecccCceee--eeeccc-cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 134 QILERGGVE--TKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 134 d~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
++.++-..+ ...+.+ ......+++|..+. +++++|.....++++|++......... ....+..+.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~sv-----------nTk~vqG~t 202 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSV-----------NTKYVQGIT 202 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhh-----------hhhhcccce
Confidence 998762221 111222 33456688888776 688899988899999998432221111 111456677
Q ss_pred EcCCCCcEEEEEeCCCeEEEEE-cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEc--CCeEEE
Q 009266 211 IDPRNANLFAVAGSDEYTRLYD-IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN--DEFIYL 286 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~--~~~i~~ 286 (538)
..|-.+.++++-. +|.|.+|| .++.+ .|+.. ...........+..++|.|... +|++.. .++|++
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnie--------npl~~--i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIE--------NPLQI--ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhc--------cHHHH--HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 7775467777655 99999999 43322 11111 0111111223688999999643 455555 348999
Q ss_pred eeccC
Q 009266 287 FTQDM 291 (538)
Q Consensus 287 ~d~~~ 291 (538)
|++..
T Consensus 272 ydi~~ 276 (783)
T KOG1008|consen 272 YDICV 276 (783)
T ss_pred ecccc
Confidence 99864
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=0.00012 Score=61.20 Aligned_cols=111 Identities=13% Similarity=0.081 Sum_probs=82.1
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
..+++.|+..+.++--|.++|+.+....- ...|-+-+.- -|++++.|+..|.+++.++.++........- ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeeh---hh
Confidence 46788899999999999999998766532 3344444443 4678999999999999999999766542221 11
Q ss_pred cE-EEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeec
Q 009266 153 AH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (538)
Q Consensus 153 v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 192 (538)
|. .....+++ .++..++.|++.+..|.++..++...++.
T Consensus 95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred hccceEEcCCC-ceEEEecCCCcEEEecccccceEEecccC
Confidence 21 23445666 68999999999999999999988876653
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.69 E-value=2.2e-08 Score=93.16 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=132.0
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC-CCCEEEEec--
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS-- 80 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~t~~-- 80 (538)
+|+..+...+++|..+|.|-+-.+....-. -.....+|....++++|++ |..+||.|-
T Consensus 64 ~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldk 124 (783)
T KOG1008|consen 64 SFYGNDRCILAVGSATGNISLLSVRHPHDS-------------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDK 124 (783)
T ss_pred hhcCCchhhhhhccccCceEEeecCCcccc-------------------cceecccccccccccccccccHHHHHhhhhh
Confidence 456666778899999998888776532211 0133567888999999998 567777763
Q ss_pred --CCCeEEEEECCCCc--e--eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcE
Q 009266 81 --DDRRVILWDWKTER--V--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (538)
Q Consensus 81 --~d~~i~iw~~~~~~--~--~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~ 154 (538)
.+..+.||++.++- + ...+..+......+++|.. +.++|++|.....+++++++...... ..-.+..+.
T Consensus 125 hrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr--d~klvlaGm~sr~~~ifdlRqs~~~~---~svnTk~vq 199 (783)
T KOG1008|consen 125 HRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR--DTKLVLAGMTSRSVHIFDLRQSLDSV---SSVNTKYVQ 199 (783)
T ss_pred hcccCCccceecccccCCCccccccccccccCcccccccc--Ccchhhcccccchhhhhhhhhhhhhh---hhhhhhhcc
Confidence 24579999998762 2 1222222344566889987 88999999999999999987432211 112344577
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEe-cCCCCe-eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC-CCeEEEE
Q 009266 155 KLAIEPGSPHVFYTCGEDGLVQHFD-LRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRLY 231 (538)
Q Consensus 155 ~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~iw 231 (538)
.+.+.|-.+.++++- .+|.|.+|| .+.-+. +..+. +.... ....+..++|.|....++++... .++|++|
T Consensus 200 G~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~-~~~N~-----~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIIL-RNENK-----KPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred cceecCCCCCceecc-ccCceeeccchhhhccHHHHHh-hCCCC-----cccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 788888555665554 599999999 443322 22221 11111 12258899999975556666554 4789999
Q ss_pred EcCCc
Q 009266 232 DIRKY 236 (538)
Q Consensus 232 d~~~~ 236 (538)
++...
T Consensus 273 di~~v 277 (783)
T KOG1008|consen 273 DICVV 277 (783)
T ss_pred ccccc
Confidence 98753
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=5.9e-06 Score=80.22 Aligned_cols=199 Identities=14% Similarity=0.200 Sum_probs=128.1
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCC-eEEEEEeecCCCceEEEEeCCC-----cEEEeecc
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-VFQAKIMPFTDDRSIVTCAADG-----QVRHAQIL 136 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~l~s~~~dg-----~v~vwd~~ 136 (538)
.|+| |++.+..+|.|+.+|.|.+.+- .-+.+..+ .++... |..+.... ...+|++.+.|+ .|+||++.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEeccc
Confidence 5555 5677889999999998877763 23333555 556655 44444433 346888877664 48999986
Q ss_pred cC------ceeeeeecc-----ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecC--CCCeeeeeeecccCCCCCccee
Q 009266 137 ER------GGVETKLLG-----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR--TGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 137 ~~------~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
.. .++..+.+. ..+.++.+++++.+- +.+|+|-.+|.|..+.-. ..+-.+..- .|...
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~--------~~~~~ 171 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDY--------SHRGK 171 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceee--------eccCC
Confidence 43 122111122 235678899999886 789999999999988421 111111111 11245
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCe
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 283 (538)
.+|+.+++..++...++++ .-..|.+|.+.... ........+...+.|.+|++....+++++...
T Consensus 172 ~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~gr~--------------p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~ 236 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVA-TTEQVMLYSLSGRT--------------PSLKVLDNNGISLNCSSFSDGTYQFICAGSEF 236 (933)
T ss_pred CCceeeEEecCCceeEEEE-ecceeEEEEecCCC--------------cceeeeccCCccceeeecCCCCccEEEecCce
Confidence 5899999988744423333 33578999988432 11233455677889999998777788888889
Q ss_pred EEEeeccC
Q 009266 284 IYLFTQDM 291 (538)
Q Consensus 284 i~~~d~~~ 291 (538)
+++|+...
T Consensus 237 l~fY~sd~ 244 (933)
T KOG2114|consen 237 LYFYDSDG 244 (933)
T ss_pred EEEEcCCC
Confidence 99999765
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=8.2e-06 Score=77.60 Aligned_cols=152 Identities=11% Similarity=0.113 Sum_probs=106.6
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
....++|+.|+.-|.|++|+..+|+.. .....+-.+.+..+..++...++|.|+..|.|.
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~--------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMR--------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVS 101 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhh--------------------cccccCccceEEEEEecchhHhhhhhcCCceEE
Confidence 456788999999999999999987765 223334556777788899999999999999999
Q ss_pred EEECCCCcee-----eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce--eeeeeccccCCCcEEEEEc
Q 009266 87 LWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 87 iw~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~ 159 (538)
++-++.+.+. ......|...|++++|++ ++..|++|...|+|.+-.+.+... .....+......|..|...
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9988764432 122244788999999999 999999999999999988876211 0111233345667777766
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCC
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGA 184 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~ 184 (538)
.. .+|++.... ..+++++.+.
T Consensus 180 q~--~LLVStl~r--~~Lc~tE~et 200 (726)
T KOG3621|consen 180 QS--YLLVSTLTR--CILCQTEAET 200 (726)
T ss_pred cc--eehHhhhhh--hheeecchhH
Confidence 52 345544432 3444544443
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.63 E-value=6.7e-06 Score=72.87 Aligned_cols=279 Identities=11% Similarity=0.061 Sum_probs=153.8
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC----------CCcEEEeecccCceeeeeecccc-C-
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVETKLLGKH-Q- 150 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~~~~-~- 150 (538)
+++.|+|..+++.+..+..+. .-.+..+| +++.+++++. .-.|.+||..+-.......++.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 479999999999877774444 33466789 9999887642 34689999988766554444431 1
Q ss_pred ---CCcEEEEEcCCCCcEEEEE--cCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC
Q 009266 151 ---GRAHKLAIEPGSPHVFYTC--GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (538)
Q Consensus 151 ---~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 225 (538)
.....++++.+++ +++.. +--..|.|.|+..++.+..+..+ -|...-|.+..-|.+-|.|
T Consensus 92 ~~~~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--------------GC~~iyP~~~~~F~~lC~D 156 (342)
T PF06433_consen 92 QVVPYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDTP--------------GCWLIYPSGNRGFSMLCGD 156 (342)
T ss_dssp -BS--GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEGT--------------SEEEEEEEETTEEEEEETT
T ss_pred eecccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecCC--------------CEEEEEecCCCceEEEecC
Confidence 1234467788884 44443 22346888888888887776632 1222223334568888999
Q ss_pred CeEEEEEcCC-ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEcCCeEEEeeccCCCCCCCCCCCCc
Q 009266 226 EYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPV 303 (538)
Q Consensus 226 g~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~ 303 (538)
|.+....+.. ++.... . ...+.......+..-++.. .++++.....|.|+-.++.........+
T Consensus 157 Gsl~~v~Ld~~Gk~~~~---------~-t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~---- 222 (342)
T PF06433_consen 157 GSLLTVTLDADGKEAQK---------S-TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP---- 222 (342)
T ss_dssp SCEEEEEETSTSSEEEE---------E-EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE----
T ss_pred CceEEEEECCCCCEeEe---------e-ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc----
Confidence 9999888873 332100 0 0001111111222333443 3455556667888888776532100000
Q ss_pred cccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec---cC-------CeEEEeecc
Q 009266 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DC-------GRIFIWKKK 373 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs---~d-------g~i~iwd~~ 373 (538)
+... . .... ...-.+....-+++ ++..+.|++-- .. ..|.+||++
T Consensus 223 ------~~~~---------t----~~e~-----~~~WrPGG~Q~~A~-~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 223 ------WSLL---------T----DAEK-----ADGWRPGGWQLIAY-HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp ------EESS--------------HHHH-----HTTEEE-SSS-EEE-ETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred ------cccc---------C----cccc-----ccCcCCcceeeeee-ccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 0000 0 0000 00000001223444 44333333211 11 258899999
Q ss_pred CcceeEEeecCcceeeEEeecCCCC-eEEEe-ecCCceEEecCCCCcccc
Q 009266 374 GGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADRAT 421 (538)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~-~~dg~v~vw~~~~~~~~~ 421 (538)
+++.+.++.. ..++.+|+.+.+.+ +|++. ..++.|.|||..+++...
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 9999999875 34688999998877 66554 467999999999987644
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.61 E-value=9.9e-05 Score=69.21 Aligned_cols=302 Identities=13% Similarity=0.085 Sum_probs=152.7
Q ss_pred CCCCceEEee---------ccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEE
Q 009266 7 NNNNKRARTS---------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (538)
Q Consensus 7 ~~~~~~l~t~---------~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 77 (538)
+|++++++.. +..+.+.|+++.+++.. .+......+....|||+|+.||
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~----------------------~l~~~~~~~~~~~~sP~g~~~~ 58 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT----------------------PLTPPPPKLQDAKWSPDGKYIA 58 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE----------------------ESS-EETTBSEEEE-SSSTEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE----------------------ECcCCccccccceeecCCCeeE
Confidence 5777777763 33467888888877653 2222267789999999999999
Q ss_pred EecCCCeEEEEECCCCceeeeeccCC----------------CCCeEEEEEeecCCCceEEEEeCC-CcEEEeecccCce
Q 009266 78 SGSDDRRVILWDWKTERVKLSFHSGH----------------NDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQILERGG 140 (538)
Q Consensus 78 t~~~d~~i~iw~~~~~~~~~~~~~~~----------------~~~v~~l~~~~~~~~~~l~s~~~d-g~v~vwd~~~~~~ 140 (538)
... ++.|.++++.++...+-...+- -+.-..+.||| ++++||....| ..|+.+.+..
T Consensus 59 ~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~~~d~~~v~~~~~~~--- 132 (353)
T PF00930_consen 59 FVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFLRFDEREVPEYPLPD--- 132 (353)
T ss_dssp EEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEEEEE-TTS-EEEEEE---
T ss_pred EEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEEEECCcCCceEEeec---
Confidence 886 4789999988775432221220 11235688999 99999877643 4454444321
Q ss_pred eeeeeccccC---CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 141 VETKLLGKHQ---GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 141 ~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
..... -.+..+.+-.-|... .. -.+.|+++.+++....-...... .....+..+.|.++ +.
T Consensus 133 -----~~~~~~~yp~~~~~~YPk~G~~n-p~----v~l~v~~~~~~~~~~~~~~~~~~-----~~~~yl~~v~W~~d-~~ 196 (353)
T PF00930_consen 133 -----YSPPDSQYPEVESIRYPKAGDPN-PR----VSLFVVDLASGKTTELDPPNSLN-----PQDYYLTRVGWSPD-GK 196 (353)
T ss_dssp -----ESSSTESS-EEEEEE--BTTS----E----EEEEEEESSSTCCCEE---HHHH-----TSSEEEEEEEEEET-TE
T ss_pred -----cCCccccCCcccccccCCCCCcC-Cc----eEEEEEECCCCcEEEeeeccccC-----CCccCcccceecCC-Cc
Confidence 11111 123344443223111 11 14777898887764222110000 02346889999998 45
Q ss_pred EEEEE--eCCC---eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEc-CCCCEEEEEc--CC--eEEEe
Q 009266 218 LFAVA--GSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN--DE--FIYLF 287 (538)
Q Consensus 218 ~l~~~--~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~--~~--~i~~~ 287 (538)
.|+.. ..+. .+.++|..++...... ........ .....+.|. +++..++..+ +| .|+++
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~-------~e~~~~Wv----~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGETRVVL-------EETSDGWV----DVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTCEEEE-------EEESSSSS----SSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred EEEEEEcccCCCEEEEEEEECCCCceeEEE-------EecCCcce----eeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 33332 2222 3566676654321000 00000111 111234443 6655443333 45 57777
Q ss_pred eccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEE-EeccC--
Q 009266 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDC-- 364 (538)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~-~gs~d-- 364 (538)
+...+. .+.+....- .|..+..+++.++.|+ ++..+
T Consensus 266 ~~~~~~---------------------------------------~~~lT~G~~--~V~~i~~~d~~~~~iyf~a~~~~p 304 (353)
T PF00930_consen 266 DLDGGK---------------------------------------PRQLTSGDW--EVTSILGWDEDNNRIYFTANGDNP 304 (353)
T ss_dssp ETTSSE---------------------------------------EEESS-SSS---EEEEEEEECTSSEEEEEESSGGT
T ss_pred cccccc---------------------------------------eeccccCce--eecccceEcCCCCEEEEEecCCCC
Confidence 766531 122222222 2555444477776554 45442
Q ss_pred --CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEee
Q 009266 365 --GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG 404 (538)
Q Consensus 365 --g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 404 (538)
..|+.-++..+..+..|....+.-..+.|||++++++-..
T Consensus 305 ~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 305 GERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 3566666663444555554333336899999999776543
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.56 E-value=2.5e-05 Score=73.01 Aligned_cols=246 Identities=13% Similarity=0.071 Sum_probs=132.3
Q ss_pred CeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee-----------------------------------------eee
Q 009266 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-----------------------------------------ETK 144 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~-----------------------------------------~~~ 144 (538)
.|+++.|.+ ...-|+++...|.|.||.+..++.. +..
T Consensus 3 ~v~~vs~a~--~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSFAP--ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEEET--TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEecC--CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 578888888 7778888888899988876433211 111
Q ss_pred eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC----CC---Cc
Q 009266 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP----RN---AN 217 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~ 217 (538)
.+....++|++++.+.-| +++.|..+|.+.|.|+|....+..-.... ..........++++.|.- ++ .-
T Consensus 81 l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~--~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE--SFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred heeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccc--cccccccccCeeEEEEEEEecCCCcccce
Confidence 123356889999998776 78999999999999999888776644333 111122344677777752 11 25
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEE-EcCC---------------------CCE
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA-FSDQ---------------------SEL 275 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~---------------------~~~ 275 (538)
++++|+..|.+.+|.+.-... +.+.. ........+..+|..+. |+.+ ..+
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~-g~f~v-------~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSN-GRFSV-------QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GG-G-EEE-------EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred EEEEEeCCCCEEEEEEecCCC-CceEE-------EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 789999999999998852110 00000 00000011223333333 2111 126
Q ss_pred EEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEe----
Q 009266 276 LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF---- 351 (538)
Q Consensus 276 l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~---- 351 (538)
+++++...++++...+.+ ...+.+ .....+..+++.
T Consensus 229 vVvvSe~~irv~~~~~~k-------------------------------------~~~K~~---~~~~~~~~~~vv~~~~ 268 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSK-------------------------------------GAHKSF---DDPFLCSSASVVPTIS 268 (395)
T ss_dssp EEEE-SSEEEEE-TT----------------------------------------EEEEE----SS-EEEEEEEEEEEE-
T ss_pred EEEEcccceEEEeCCCCc-------------------------------------ccceee---ccccccceEEEEeecc
Confidence 677777788888765521 111222 111112233331
Q ss_pred cCCCcEEEEeccCCeEEEeeccCcceeEEeecCc----ceeeEEeecCCCCeEEEeec
Q 009266 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR----HVVNCIEPHPHSTVLASSGI 405 (538)
Q Consensus 352 s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~ 405 (538)
...+..|++-..+|.|++|.+...+.+..++.+. ..+....++++|..++-.+.
T Consensus 269 ~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 269 RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred cCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 2356678888899999999999999888776543 35667788999997766654
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.54 E-value=4e-05 Score=73.84 Aligned_cols=265 Identities=10% Similarity=0.000 Sum_probs=147.8
Q ss_pred EEEEecCCCeEEEEECCCCceeeeecc---------------------CCC------CCeEEEEEee---cCCCceEEEE
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSFHS---------------------GHN------DNVFQAKIMP---FTDDRSIVTC 124 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~~~---------------------~~~------~~v~~l~~~~---~~~~~~l~s~ 124 (538)
.+.||+..|.|+|+-+.+++.+..+.. ++. +......+|. ..+|++|+.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 367899999999999988877655410 010 0011111111 1256777776
Q ss_pred eC-CCcEEEeecccCceeeeeeccccCCCcEEEE-------------------EcCCCCcEEEEEcCCCcEEEEecCCCC
Q 009266 125 AA-DGQVRHAQILERGGVETKLLGKHQGRAHKLA-------------------IEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (538)
Q Consensus 125 ~~-dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~-------------------~~~~~~~~l~s~~~dg~i~iwd~~~~~ 184 (538)
.. ...|...++...++.....++ ....+..++ +.|+|..+..+.-..+.+.+.|..+.+
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iP-n~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELP-NVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCC-CccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 64 455555555544433222111 111222222 334552222233344667788888777
Q ss_pred eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC---C-CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC
Q 009266 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---D-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (538)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (538)
...++.... ....++++|+ +.++++.+. . .++...+....
T Consensus 227 V~~qV~Vdg-----------npd~v~~spd-Gk~afvTsyNsE~G~tl~em~a~e~------------------------ 270 (635)
T PRK02888 227 VAWQVMVDG-----------NLDNVDTDYD-GKYAFSTCYNSEEGVTLAEMMAAER------------------------ 270 (635)
T ss_pred EEEEEEeCC-----------CcccceECCC-CCEEEEeccCcccCcceeeeccccC------------------------
Confidence 666655322 3466788997 556655542 2 22222222111
Q ss_pred ccceEEE------EEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCc
Q 009266 261 QVGITGL------AFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (538)
Q Consensus 261 ~~~i~~~------~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
..+..+ ++.++|++... ..++|.++|..+.... ......
T Consensus 271 -d~~vvfni~~iea~vkdGK~~~V-~gn~V~VID~~t~~~~---------------------------------~~~v~~ 315 (635)
T PRK02888 271 -DWVVVFNIARIEEAVKAGKFKTI-GGSKVPVVDGRKAANA---------------------------------GSALTR 315 (635)
T ss_pred -ceEEEEchHHHHHhhhCCCEEEE-CCCEEEEEECCccccC---------------------------------CcceEE
Confidence 111111 33457776555 4567999997651000 011222
Q ss_pred eeeccccceeeeEEEEecCCCcEEEEec-cCCeEEEeeccCcce------------eEEeecCcceeeEEeecCCCCeEE
Q 009266 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGEL------------IRVIEADRHVVNCIEPHPHSTVLA 401 (538)
Q Consensus 335 ~~~~~~~~~~i~~v~~~s~~~~~l~~gs-~dg~i~iwd~~~~~~------------~~~~~~h~~~v~~~~~s~~~~~l~ 401 (538)
.+..-.. .+.+.+ +|+|+++++++ .+.+|.|+|+.+.+. +.+... .......+|.++|+...
T Consensus 316 yIPVGKs---PHGV~v-SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~ayt 390 (635)
T PRK02888 316 YVPVPKN---PHGVNT-SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYT 390 (635)
T ss_pred EEECCCC---ccceEE-CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEE
Confidence 2222222 678888 99999887655 578999999987653 333332 23456778999999888
Q ss_pred EeecCCceEEecCCC
Q 009266 402 SSGIESDIKILTPNA 416 (538)
Q Consensus 402 s~~~dg~v~vw~~~~ 416 (538)
|-..|..|..|++..
T Consensus 391 slf~dsqv~kwn~~~ 405 (635)
T PRK02888 391 TLFLDSQIVKWNIEA 405 (635)
T ss_pred eEeecceeEEEehHH
Confidence 999999999999876
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.50 E-value=0.001 Score=65.45 Aligned_cols=208 Identities=16% Similarity=0.130 Sum_probs=114.2
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcE-------EEEEEcCCCCEEEEecCC
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCV-------NTVSFNTDGDILISGSDD 82 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~s~~g~~l~t~~~d 82 (538)
+.+|++++.++.|+-.|..+|+.+-+.... .......+ ..+++. +..|+.++.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~-----------------~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~d 129 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPK-----------------LPDDVIPVMCCDVVNRGVALY--DGKVFFGTLD 129 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCC-----------------CCcccccccccccccccceEE--CCEEEEEcCC
Confidence 456777777888888898888875321100 00000000 112222 3466777889
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecC-CCceEEEEe------CCCcEEEeecccCceeeeeeccccC-----
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCA------ADGQVRHAQILERGGVETKLLGKHQ----- 150 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~~----- 150 (538)
+.|.-.|..+|+.+.+........-..+.-+|.. ++ .|+++. .+|.|..+|..+++.+.........
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~ 208 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD 208 (527)
T ss_pred CEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc
Confidence 9999999999998876632211110111112211 34 455443 2688999999888776442221110
Q ss_pred ------------------------CCc-EEEEEcCCCCcEEEEEcC-----CC-----------cEEEEecCCCCeeeee
Q 009266 151 ------------------------GRA-HKLAIEPGSPHVFYTCGE-----DG-----------LVQHFDLRTGAATELF 189 (538)
Q Consensus 151 ------------------------~~v-~~~~~~~~~~~~l~s~~~-----dg-----------~i~iwd~~~~~~~~~~ 189 (538)
..+ ..+++.|.. .+++.+.. .+ .|.-.|++|++....+
T Consensus 209 ~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 209 KADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred ccccccccccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 011 123555555 34555441 12 6788899999998877
Q ss_pred eecccCCCCCcceeeeeEEEEEcCCCC--cEEEEEeCCCeEEEEEcCCcccc
Q 009266 190 TCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWD 239 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~ 239 (538)
+........ +.......-+.+..++. ..++.+..+|.+.+.|.++++++
T Consensus 288 Q~~~~D~wD-~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 288 QTTPHDEWD-YDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eCCCCCCcc-ccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 754332211 00111112222223322 37889999999999999999875
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.50 E-value=8.3e-05 Score=66.14 Aligned_cols=278 Identities=14% Similarity=0.110 Sum_probs=148.4
Q ss_pred CceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC----------CCeEEEEE
Q 009266 20 ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----------DRRVILWD 89 (538)
Q Consensus 20 ~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~----------d~~i~iw~ 89 (538)
+.|.|.|..+++++.. +. .+..-.+..+|+++.+.+++. .-.|.+||
T Consensus 17 ~rv~viD~d~~k~lGm---------------------i~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D 73 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGM---------------------ID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWD 73 (342)
T ss_dssp EEEEEEETTTTEEEEE---------------------EE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ceEEEEECCCCcEEEE---------------------ee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEe
Confidence 4688888887776521 11 122334668999998886532 33699999
Q ss_pred CCCCceeeeeccCC--CC----CeEEEEEeecCCCceEEEEeC--CCcEEEeecccCceeeeeeccccCCCcEEEEEcCC
Q 009266 90 WKTERVKLSFHSGH--ND----NVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 90 ~~~~~~~~~~~~~~--~~----~v~~l~~~~~~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
..+-.....+.... +. ....++++. ++++++.... -..|.|-|+..++.+......+ |...-|.
T Consensus 74 ~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~--dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~ 145 (342)
T PF06433_consen 74 TQTLSPTGEIEIPPKPRAQVVPYKNMFALSA--DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPS 145 (342)
T ss_dssp TTTTEEEEEEEETTS-B--BS--GGGEEE-T--TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEE
T ss_pred cCcCcccceEecCCcchheecccccceEEcc--CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEec
Confidence 99987765442221 11 233456777 8888877643 4678888888877765533332 3333454
Q ss_pred CCcEEEEEcCCCcEEEEecC-CCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 162 SPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
++.-|.+.+.||.+....+. .|+....... ..... ...-+..-++... +..++-.+..|.|+-.++......-
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~-~F~~~----~dp~f~~~~~~~~-~~~~~F~Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTK-VFDPD----DDPLFEHPAYSRD-GGRLYFVSYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEE-ESSTT----TS-B-S--EEETT-TTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeecc-ccCCC----CcccccccceECC-CCeEEEEecCCEEEEEeccCCcccc
Confidence 44568888899999999887 4554422111 00000 0001122233333 3344446778888887776543110
Q ss_pred CCCCCCCCcccCCCCcc----CCCccceEEEEEcCCCCEEEEEc----C-----C--eEEEeeccCCCCCCCCCCCCccc
Q 009266 241 STDFGQPADYFCPPNLI----GDEQVGITGLAFSDQSELLVSYN----D-----E--FIYLFTQDMGLGPNPPPSSPVST 305 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~----~-----~--~i~~~d~~~~~~~~~~~~~~~~~ 305 (538)
. .+ ..+..-. .-..+...-+++++....|.+.- . . .|.+||+.+
T Consensus 220 ~----~~---~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-------------- 278 (342)
T PF06433_consen 220 G----KP---WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-------------- 278 (342)
T ss_dssp E----EE---EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT--------------
T ss_pred c----Cc---ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC--------------
Confidence 0 00 0000000 00112333466766443333221 1 1 266666655
Q ss_pred cccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc-EEEE-eccCCeEEEeeccCcceeEEeec
Q 009266 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVS-GSDCGRIFIWKKKGGELIRVIEA 383 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~~-gs~dg~i~iwd~~~~~~~~~~~~ 383 (538)
++.+.++.... .+.++.. +.+.+ +|++ ...++.|.+||..+|++++++..
T Consensus 279 ------------------------~krv~Ri~l~~---~~~Si~V-sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 279 ------------------------HKRVARIPLEH---PIDSIAV-SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ------------------------TEEEEEEEEEE---EESEEEE-ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ------------------------CeEEEEEeCCC---ccceEEE-ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 33444444221 2668887 77766 5544 34579999999999999988874
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.46 E-value=8.4e-05 Score=69.55 Aligned_cols=263 Identities=14% Similarity=0.109 Sum_probs=139.5
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceec-c--------ccch-------------hhcccccceEEeeeeeEEcCCcC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLST-R--------NFAL-------------RRRASEDLVLRLGIYAKLDKHRG 62 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~-~--------~~~~-------------~~~~~~~~~~~~~~~~~~~~h~~ 62 (538)
.+.+...-|++|...|.|.||.+...+.-. + .+.+ ..........-|.+...+....+
T Consensus 8 s~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g 87 (395)
T PF08596_consen 8 SFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQG 87 (395)
T ss_dssp EEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-
T ss_pred EecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCC
Confidence 355666779999999999999987654332 1 0000 00011111233567777777899
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec-c------CCCCCeEEEEEeec---CCC---ceEEEEeCCCc
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-S------GHNDNVFQAKIMPF---TDD---RSIVTCAADGQ 129 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~-~------~~~~~v~~l~~~~~---~~~---~~l~s~~~dg~ 129 (538)
+|++++.|.-| ++|.|..+|.+.|.|++....+..-. . .....|+++.|+.. .++ -+|++|...|.
T Consensus 88 ~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 88 PVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred cEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 99999998655 99999999999999998776655421 1 23446888888741 122 46888999999
Q ss_pred EEEeeccc-C-c-ee-e-eeeccccCCCcEEEE-EcCCC--------------------CcEEEEEcCCCcEEEEecCCC
Q 009266 130 VRHAQILE-R-G-GV-E-TKLLGKHQGRAHKLA-IEPGS--------------------PHVFYTCGEDGLVQHFDLRTG 183 (538)
Q Consensus 130 v~vwd~~~-~-~-~~-~-~~~~~~~~~~v~~~~-~~~~~--------------------~~~l~s~~~dg~i~iwd~~~~ 183 (538)
+.+|.+.- . . .. . ......+..+|..|. |..+. +.+++++ ....+|++.+.+.
T Consensus 167 v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~ 245 (395)
T PF08596_consen 167 VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKS 245 (395)
T ss_dssp EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT--
T ss_pred EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCC
Confidence 99998752 1 1 11 1 111123556666554 32110 1234444 4568999998877
Q ss_pred CeeeeeeecccCCCCCcceeeeeEEEEEc----CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCC
Q 009266 184 AATELFTCRPIDDRRNYMTVVNLNAIAID----PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (538)
+....... .......+++- ..++..|++-..+|.|++|.+...+......+. ...
T Consensus 246 k~~~K~~~----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~-----------~~~ 304 (395)
T PF08596_consen 246 KGAHKSFD----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP-----------PPL 304 (395)
T ss_dssp -EEEEE-S----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S-----------S--
T ss_pred cccceeec----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC-----------Ccc
Confidence 66544331 11122333332 113678888899999999999987754332221 111
Q ss_pred CccceEEEEEcCCCCEEEEEcCCeEEEeecc
Q 009266 260 EQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (538)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (538)
....+....++++|..++-.+...+.++.+-
T Consensus 305 d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 305 DSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp -HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred ccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 1234456778999998888877666555544
No 339
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.46 E-value=0.0012 Score=65.11 Aligned_cols=209 Identities=15% Similarity=0.079 Sum_probs=113.9
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeE----------EEEEeecCCCceEEEEeCCCcEEEeecccCceee
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF----------QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~----------~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 142 (538)
+..|+.++.++.|+-.|..+|+.+.++...-...+. .+++ .+..++.++.++.|.-.|..+++.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 456777777888999999999988776322111111 1222 23567788889999999999998876
Q ss_pred eeeccccCC--CcEE-EEEcCCCCcEEEEEc------CCCcEEEEecCCCCeeeeeeecccCCC------------C---
Q 009266 143 TKLLGKHQG--RAHK-LAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDR------------R--- 198 (538)
Q Consensus 143 ~~~~~~~~~--~v~~-~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~------------~--- 198 (538)
...+..+.. .+++ -.+. ++ . ++++. .+|.|..+|+++++.+..+........ .
T Consensus 145 ~~~~~~~~~~~~~tssP~v~-~g-~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~ 221 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVV-KG-K-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK 221 (527)
T ss_pred ecccccccccccccCCcEEE-CC-E-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence 543322221 1111 1111 33 3 44443 268999999999998877654322100 0
Q ss_pred -------CcceeeeeEEEEEcCCCCcEEEEEeCC-----C-----------eEEEEEcCCccccCCCCCCCCCcccCCCC
Q 009266 199 -------NYMTVVNLNAIAIDPRNANLFAVAGSD-----E-----------YTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (538)
Q Consensus 199 -------~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
.+.....-..+++.|. ..+|+.+..+ + .|.-.|++++++.-.++..+ .-
T Consensus 222 tw~~~~~~~gg~~~W~~~s~D~~-~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~-------~D 293 (527)
T TIGR03075 222 TWPGDAWKTGGGATWGTGSYDPE-TNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP-------HD 293 (527)
T ss_pred CCCCCccccCCCCccCceeEcCC-CCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC-------CC
Confidence 0001111224577776 3455555422 2 46666777776543322210 00
Q ss_pred ccCC-CccceEEEEEcCCCC---EEEEEc-CCeEEEeeccCCCCCC
Q 009266 256 LIGD-EQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPN 296 (538)
Q Consensus 256 ~~~~-~~~~i~~~~~s~~~~---~l~~~~-~~~i~~~d~~~~~~~~ 296 (538)
...- ......-+.+..+|+ .|+.+. .|.++++|..+++.+.
T Consensus 294 ~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 294 EWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 0000 001112222334665 565666 6789999999987653
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.46 E-value=0.00048 Score=64.99 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=58.9
Q ss_pred eeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 345 i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
+.++++ +|+...|+.|+.||.|.+||...+.. .+..+.-.++.++|+|+|.++++|+..|.|.+||+.-
T Consensus 262 v~~ca~-sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 262 VICCAR-SPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ceEEec-CcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 888888 99999999999999999999866532 2333445679999999999999999999999999864
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1e-05 Score=78.40 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=81.1
Q ss_pred CCCCCCceEEeec----cCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEec
Q 009266 5 SNNNNNKRARTSV----DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (538)
Q Consensus 5 ~~~~~~~~l~t~~----~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~ 80 (538)
..+|..+++++++ +.|.|.||- .+|+.-.. -+. .-.+++++|+|..-.|+.|-
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-------------------Vt~---P~hatSLCWHpe~~vLa~gw 78 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-------------------VTY---PVHATSLCWHPEEFVLAQGW 78 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-------------------ccc---ceehhhhccChHHHHHhhcc
Confidence 4567777877775 447777774 33553211 011 12356799999998999999
Q ss_pred CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc
Q 009266 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~ 136 (538)
.-|.+.+|...+.+. ++....|..+|..+.||| +|..|+++..-|.|.+|...
T Consensus 79 e~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccceeEEEecCCcee-eeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEee
Confidence 999999999776554 666678999999999999 99999999999999999876
No 342
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.43 E-value=0.0028 Score=63.55 Aligned_cols=80 Identities=6% Similarity=0.002 Sum_probs=58.9
Q ss_pred ceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 334 ~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
+....+.-...+.++.. -+|++||.-+ ..|++|++.+.+.++.-..|..++..+...-.+..+|.|..-+.|.+..
T Consensus 821 ~~v~e~~v~Gav~aL~~--fngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVE--FNGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhh--hCCeEEEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 33333333334666654 3788887654 5799999988877777677888999999999999999999888888766
Q ss_pred CCCC
Q 009266 414 PNAA 417 (538)
Q Consensus 414 ~~~~ 417 (538)
....
T Consensus 897 y~~~ 900 (1096)
T KOG1897|consen 897 YKGD 900 (1096)
T ss_pred Eecc
Confidence 5543
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.42 E-value=0.00054 Score=67.20 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=94.3
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCC-----CCeE--EEEEeecCCCceEEEEeCCCcEEEeecccCceeeeee
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHN-----DNVF--QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~-----~~v~--~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 145 (538)
+..|..++.++.|.-.|..+|+.+.++..... ..+. .+++. ++..++.++.++.|.-+|..+++.+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 44566777789999999999998777632221 0110 11111 22688888889999999999998876644
Q ss_pred ccccCCC---c-EEEEEcCCCCcEEEEEc---------CCCcEEEEecCCCCeeeeeeecccCC--CCCc---------c
Q 009266 146 LGKHQGR---A-HKLAIEPGSPHVFYTCG---------EDGLVQHFDLRTGAATELFTCRPIDD--RRNY---------M 201 (538)
Q Consensus 146 ~~~~~~~---v-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~---------~ 201 (538)
+..+... + ....+.. + +++.++ .++.|..+|..+++.+..+....... .+.. .
T Consensus 138 ~~~~~~~~~~i~ssP~v~~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVK-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred CCCCcCcceEecCCCEEEC-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 4332100 1 1112222 2 344443 46789999999999888776532110 0000 0
Q ss_pred eeeeeEEEEEcCCCCcEEEEEeCCC------------------eEEEEEcCCccccCC
Q 009266 202 TVVNLNAIAIDPRNANLFAVAGSDE------------------YTRLYDIRKYKWDGS 241 (538)
Q Consensus 202 ~~~~v~~~~~~~~~~~~l~~~~~dg------------------~v~iwd~~~~~~~~~ 241 (538)
....-.+.++.+. +.+++.++.++ .|.-+|+.+++..-.
T Consensus 215 g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~ 271 (488)
T cd00216 215 GGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF 271 (488)
T ss_pred CCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE
Confidence 0000113455554 35666676554 688889988876544
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.41 E-value=0.00011 Score=68.93 Aligned_cols=283 Identities=14% Similarity=0.164 Sum_probs=140.0
Q ss_pred cCCCCEEEEe---------cCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce
Q 009266 70 NTDGDILISG---------SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (538)
Q Consensus 70 s~~g~~l~t~---------~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 140 (538)
||++++++.. +..+.+.||++.+++..... . ....+....|+| +|+.++... ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-~-~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-P-PPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-C-Cccccccceeec--CCCeeEEEe-cCceEEEECCCCCe
Confidence 6788877763 23467999999987754333 2 267889999999 999998887 47899999877644
Q ss_pred eeeeeccc-------c---------CCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 141 VETKLLGK-------H---------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 141 ~~~~~~~~-------~---------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
.+. +..+ - -..-..+-|+|++.++++.--.+..|+.+.+........ .-.
T Consensus 76 ~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------------~yp 141 (353)
T PF00930_consen 76 TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------------QYP 141 (353)
T ss_dssp EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------------SS-
T ss_pred EEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------------cCC
Confidence 332 1222 0 123356889999965444444444455444321111000 000
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEc-C-
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-D- 281 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~- 281 (538)
.+..+.+-.-|... ... .+.++++.+++.... .+..........+..+.|.++++ +++.-. .
T Consensus 142 ~~~~~~YPk~G~~n-p~v----~l~v~~~~~~~~~~~----------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~ 206 (353)
T PF00930_consen 142 EVESIRYPKAGDPN-PRV----SLFVVDLASGKTTEL----------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD 206 (353)
T ss_dssp EEEEEE--BTTS----EE----EEEEEESSSTCCCEE-------------HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred cccccccCCCCCcC-Cce----EEEEEECCCCcEEEe----------eeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence 23444442221111 111 367788877653210 01111122356789999999998 444333 2
Q ss_pred -C--eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccccee-eeEEEEecCCC-c
Q 009266 282 -E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT-VKGVNFFGPKC-E 356 (538)
Q Consensus 282 -~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~v~~~s~~~-~ 356 (538)
+ .+.+++..++..... . .......+. .....|+.+++ .
T Consensus 207 q~~~~l~~~d~~tg~~~~~------------------------------------~-~e~~~~Wv~~~~~~~~~~~~~~~ 249 (353)
T PF00930_consen 207 QNRLDLVLCDASTGETRVV------------------------------------L-EETSDGWVDVYDPPHFLGPDGNE 249 (353)
T ss_dssp STEEEEEEEEECTTTCEEE------------------------------------E-EEESSSSSSSSSEEEE-TTTSSE
T ss_pred CCEEEEEEEECCCCceeEE------------------------------------E-EecCCcceeeecccccccCCCCE
Confidence 2 356666655321100 0 001111100 12334422444 4
Q ss_pred EEEEeccCC--eEEEeeccCcceeEEeecCcceee-EEeecCCCCeE-EEeecC--C--ceEEecCC-CCcccccCc
Q 009266 357 YVVSGSDCG--RIFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTVL-ASSGIE--S--DIKILTPN-AADRATLPT 424 (538)
Q Consensus 357 ~l~~gs~dg--~i~iwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l-~s~~~d--g--~v~vw~~~-~~~~~~~~~ 424 (538)
+|.....+| .|++++...+. ...+....-.|+ -+.|.++++.| +++..+ + .|+.-++. ++....+..
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred EEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 555555666 45566665554 345544445564 47788887754 344432 2 34444555 555544443
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.32 E-value=0.0019 Score=58.96 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=77.7
Q ss_pred EEEcCCCCEEEEecC-C--CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee
Q 009266 67 VSFNTDGDILISGSD-D--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (538)
Q Consensus 67 ~~~s~~g~~l~t~~~-d--~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 143 (538)
=+|.++|+.|+.++. + ..+.+-|+.+++...-. .+.........++| +.+.|+-......|+-.++.+.+....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~--~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSP--DDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-T--TSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEec--CCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 356778876665544 4 45777788887764332 33223344566778 778877666667888889988776544
Q ss_pred eeccccCCCcEEEEEc--CCCCcEEEEE----------------------cCCCcEEEEecCCCCeeeeeeecccCCCCC
Q 009266 144 KLLGKHQGRAHKLAIE--PGSPHVFYTC----------------------GEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~--~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (538)
+.-....+-...|. .++ .+++-. --...|...++.+++....+.
T Consensus 118 --y~~p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--------- 185 (386)
T PF14583_consen 118 --YEVPDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--------- 185 (386)
T ss_dssp --EE--TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE---------
T ss_pred --EECCcccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe---------
Confidence 22233334334443 344 333221 112356667788877766665
Q ss_pred cceeeeeEEEEEcCCCCcEEEEEeCC---C-eEEEEEcCC
Q 009266 200 YMTVVNLNAIAIDPRNANLFAVAGSD---E-YTRLYDIRK 235 (538)
Q Consensus 200 ~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~v~iwd~~~ 235 (538)
....+.-+.|+|.++.+|+-|-+. . .-|||-+++
T Consensus 186 --~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 186 --DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp --ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred --cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 334678899999877777766532 2 136676664
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.32 E-value=0.001 Score=60.22 Aligned_cols=243 Identities=14% Similarity=0.114 Sum_probs=130.7
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeee------
Q 009266 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL------ 145 (538)
Q Consensus 72 ~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~------ 145 (538)
.++.|+.|..+| |.++++.......++ .+...|..|...| .-+.|++-+ |+.++++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEec--ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 478899998888 899998433333333 2334599999998 766666665 4999999987654433110
Q ss_pred ------ccccCCCcEEEE--EcCCCCcEEEEEcCCCcEEEEecCCC-----CeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 146 ------LGKHQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTG-----AATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 146 ------~~~~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
.......+...+ -.+.+...|+++ ....|.+|..... +..+.+.. ...+.+++|.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-----------p~~~~~i~~~ 147 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISL-----------PDPPSSIAFL 147 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEc-----------CCCcEEEEEe
Confidence 111223344444 123332344444 4458888887663 23333332 2368889998
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCC
Q 009266 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (538)
+ +.|+.|..+ ...+.|+.++............ . ..........++..+.. +++.+|++.. ..-...+...
T Consensus 148 ~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~-~~~e~Ll~~~-~~g~fv~~~G- 217 (275)
T PF00780_consen 148 G---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSS--S-SFKSRNSSSKPLGIFQL-SDNEFLLCYD-NIGVFVNKNG- 217 (275)
T ss_pred C---CEEEEEeCC-ceEEEecCCCCceEEeCccCCc--c-hhhhcccCCCceEEEEe-CCceEEEEec-ceEEEEcCCC-
Confidence 5 466666654 4778898876532221111110 0 00000111223333333 4456666543 2222233221
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
.+. + ...+.-... ..++++.. .||++.+. +.|.||++
T Consensus 218 ~~~----------------------------------r--~~~i~W~~~---p~~~~~~~---pyli~~~~-~~iEV~~~ 254 (275)
T PF00780_consen 218 EPS----------------------------------R--KSTIQWSSA---PQSVAYSS---PYLIAFSS-NSIEVRSL 254 (275)
T ss_pred CcC----------------------------------c--ccEEEcCCc---hhEEEEEC---CEEEEECC-CEEEEEEC
Confidence 100 0 122222222 44565523 37777665 55999999
Q ss_pred cCcceeEEeecCc
Q 009266 373 KGGELIRVIEADR 385 (538)
Q Consensus 373 ~~~~~~~~~~~h~ 385 (538)
.++++++++..+.
T Consensus 255 ~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 255 ETGELVQTIPLPN 267 (275)
T ss_pred cCCcEEEEEECCC
Confidence 9999999887543
No 347
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=98.31 E-value=3e-07 Score=82.41 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=8.0
Q ss_pred CCchhhccCCCCCCCC
Q 009266 511 ESNEEAISYSDFDDYD 526 (538)
Q Consensus 511 ~~~~~~~~~~~~~~~~ 526 (538)
++..+.++|.-|-+.|
T Consensus 98 ddG~~TDnE~GFAdSD 113 (458)
T PF10446_consen 98 DDGNETDNEAGFADSD 113 (458)
T ss_pred ccCccCcccccccccc
Confidence 3444555555554443
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=0.00019 Score=72.98 Aligned_cols=212 Identities=12% Similarity=0.112 Sum_probs=128.0
Q ss_pred CCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEE
Q 009266 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (538)
Q Consensus 150 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 229 (538)
...|.++.|..+. +-++.+...|.|.+-|..+......-. -...|.+++|+|+ +.+++..+..++|.
T Consensus 68 d~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~-----------vd~GI~aaswS~D-ee~l~liT~~~tll 134 (1265)
T KOG1920|consen 68 DDEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGN-----------VDNGISAASWSPD-EELLALITGRQTLL 134 (1265)
T ss_pred CcceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeee-----------ccCceEEEeecCC-CcEEEEEeCCcEEE
Confidence 3579999999888 566777888999999887765432222 2337999999998 78888888877776
Q ss_pred EEEc----CCcccc----------CCCCCCCCCcccC-------CCCcc------C--CCccceEEEEEcCCCCEEEEE-
Q 009266 230 LYDI----RKYKWD----------GSTDFGQPADYFC-------PPNLI------G--DEQVGITGLAFSDQSELLVSY- 279 (538)
Q Consensus 230 iwd~----~~~~~~----------~~~~~~~~~~~~~-------~~~~~------~--~~~~~i~~~~~s~~~~~l~~~- 279 (538)
+-.- -..+.. ....+++....+. +.... . .....=+++.|--+|+++|+.
T Consensus 135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 5432 111111 0011111111111 00000 0 011223468999999999883
Q ss_pred ----cC-CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCC
Q 009266 280 ----ND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (538)
Q Consensus 280 ----~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~ 354 (538)
.+ .+|++|+... ..... +.+....-.+++| -|.
T Consensus 215 ~~~~~~~RkirV~drEg-~Lns~----------------------------------------se~~~~l~~~LsW-kPs 252 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDREG-ALNST----------------------------------------SEPVEGLQHSLSW-KPS 252 (1265)
T ss_pred EeccCCceeEEEecccc-hhhcc----------------------------------------cCcccccccceee-cCC
Confidence 34 4799999762 11000 0000011346777 899
Q ss_pred CcEEEEe---ccCCeEEEeeccC---cceeEEeecCcceeeEEeecCCCCeEEE---eecCCceEEecCCC
Q 009266 355 CEYVVSG---SDCGRIFIWKKKG---GELIRVIEADRHVVNCIEPHPHSTVLAS---SGIESDIKILTPNA 416 (538)
Q Consensus 355 ~~~l~~g---s~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s---~~~dg~v~vw~~~~ 416 (538)
|..+|+- +.++.|.+|..+. |.....++.....|..++|+.++..||+ ......|++|-+.+
T Consensus 253 gs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 253 GSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 9998874 3456799998532 2222223333445999999999999887 55555699998876
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=3.9e-05 Score=72.05 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=63.6
Q ss_pred CCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
.....|.|++++|+...|+.|+.||.|++||...+.... ..+.-.++.++|+| +|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---~ka~~~P~~iaWHp--~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---AKAEFIPTLIAWHP--DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---eeecccceEEEEcC--CCcEEEEEcCCceEEEEEeec
Confidence 467899999999999999999999999999987664332 23445688999999 999999999999999999864
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.29 E-value=0.00032 Score=66.65 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=113.8
Q ss_pred CCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC
Q 009266 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (538)
Q Consensus 103 ~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 182 (538)
..-....|.++| +|+++++++ +|...|+.....+.. ..+....++|.+.+ .+|+-...++|.|+.--+
T Consensus 31 ~~~~p~~ls~np--ngr~v~V~g-~geY~iyt~~~~r~k-------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNP--NGRFVLVCG-DGEYEIYTALAWRNK-------AFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-T--TSSEEEEEE-TTEEEEEETTTTEEE-------EEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECC--CCCEEEEEc-CCEEEEEEccCCccc-------ccCceeEEEEecCc--cEEEEECCCeEEEEEcCc
Confidence 334578899999 999988855 677777773322221 12334578898855 467777788899973222
Q ss_pred CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCcc
Q 009266 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (538)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (538)
......+... ..+..|-. |.+|+..+.+ .|.+||+.+++..+... -.
T Consensus 99 ~~~~k~i~~~-----------~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~-----------------v~ 145 (443)
T PF04053_consen 99 NEVVKSIKLP-----------FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRID-----------------VS 145 (443)
T ss_dssp E-TT-----S-----------S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES-----------------S-
T ss_pred cccceEEcCC-----------cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEe-----------------cC
Confidence 2222233311 12333332 4566665544 89999999987544322 12
Q ss_pred ceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcc--cCCceeeccc
Q 009266 263 GITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR--IAPQVYKGHR 340 (538)
Q Consensus 263 ~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 340 (538)
+|..+.|+++|.+++..+.+.+++++........ . ...+ .....+. .
T Consensus 146 ~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~-~----------------------------~~~g~e~~f~~~~--E 194 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA-I----------------------------PEEGVEDAFELIH--E 194 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH-B----------------------------TTTB-GGGEEEEE--E
T ss_pred CCcEEEEECCCCEEEEEeCCeEEEEEecchhccc-c----------------------------cccCchhceEEEE--E
Confidence 4899999999999999998888888754310000 0 0000 0112222 2
Q ss_pred cceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 341 ~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
-...|.+.+| .-+ -+|.+.. . +|+. +-.|+. .++..-..++.-+...|..+.|.....++.|..+.+..
T Consensus 195 ~~~~IkSg~W-~~d-~fiYtT~-~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 195 ISERIKSGCW-VED-CFIYTTS-N-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp E-S--SEEEE-ETT-EEEEE-T-T-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ecceeEEEEE-EcC-EEEEEcC-C-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 1223788888 333 3333333 3 6665 333322 22222234677778888778888888999999887764
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.25 E-value=0.00012 Score=69.25 Aligned_cols=174 Identities=10% Similarity=0.090 Sum_probs=104.3
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe---CC-CcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA---AD-GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~---~d-g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
.+.+=|.. |.....+ ......+..-+|+| ++..++... .. ..+.++++.++.......+.++. ..-+|+
T Consensus 174 ~l~~~D~d-g~~~~~l-~~~~~~~~~p~ws~--~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fs 246 (425)
T COG0823 174 ELALGDYD-GYNQQKL-TDSGSLILTPAWSP--DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFS 246 (425)
T ss_pred eEEEEccC-CcceeEe-cccCcceeccccCc--CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCC
Confidence 34444433 4443333 34445677778999 888766553 22 46899999988776654444443 456899
Q ss_pred CCCCcEEEEEcCCCc--EEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEc--CC
Q 009266 160 PGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI--RK 235 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~--~~ 235 (538)
|+|++++++...+|. |.++|+.++...+ +... .+.-..=.|+|+|..++++.+..|.-.||-+ ..
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~----------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNG----------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCccee-cccC----------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 999888888888876 6666777766333 2211 1112255789997666677777776555544 33
Q ss_pred ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCe--EEEeeccC
Q 009266 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEF--IYLFTQDM 291 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~--i~~~d~~~ 291 (538)
.... ..... ...-..-.|+|+|++|+..+ .+. |.+.++.+
T Consensus 316 ~~~~-------------riT~~---~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 316 SQVT-------------RLTFS---GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred Ccee-------------Eeecc---CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 3210 00111 11112667999999998877 444 55666554
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.25 E-value=0.00034 Score=63.63 Aligned_cols=291 Identities=11% Similarity=0.065 Sum_probs=127.3
Q ss_pred ECCCCceeeeeccCCCC-----CeEEEEEeecCCCceEEEEeC-CC--cEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 89 DWKTERVKLSFHSGHND-----NVFQAKIMPFTDDRSIVTCAA-DG--QVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
|..||..+.++. .+.. ..+.=+|.+ +|+.|+.++. +| .+.+.|+.+++..+.. .+.........++|
T Consensus 16 D~~TG~~VtrLT-~~~~~~h~~YF~~~~ft~--dG~kllF~s~~dg~~nly~lDL~t~~i~QLT--dg~g~~~~g~~~s~ 90 (386)
T PF14583_consen 16 DPDTGHRVTRLT-PPDGHSHRLYFYQNCFTD--DGRKLLFASDFDGNRNLYLLDLATGEITQLT--DGPGDNTFGGFLSP 90 (386)
T ss_dssp -TTT--EEEE-S--TTS-EE---TTS--B-T--TS-EEEEEE-TTSS-EEEEEETTT-EEEE-----SS-B-TTT-EE-T
T ss_pred CCCCCceEEEec-CCCCcccceeecCCCcCC--CCCEEEEEeccCCCcceEEEEcccCEEEECc--cCCCCCccceEEec
Confidence 556666665552 2222 222335676 8876665554 44 5666677777665532 22112233566778
Q ss_pred CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc-CCCCcEEEEEeC---------------
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNANLFAVAGS--------------- 224 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~--------------- 224 (538)
+.+ .++-......|+-.|+.+.+....+..+.. .+....|. +.++.+++-.-.
T Consensus 91 ~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~----------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 91 DDR-ALYYVKNGRSLRRVDLDTLEERVVYEVPDD----------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp TSS-EEEEEETTTEEEEEETTT--EEEEEE--TT----------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred CCC-eEEEEECCCeEEEEECCcCcEEEEEECCcc----------cccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence 874 444444456899999999887766665432 23233442 212444432211
Q ss_pred -------CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-CEEEEEcCC---e--EEEeeccC
Q 009266 225 -------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE---F--IYLFTQDM 291 (538)
Q Consensus 225 -------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~---~--i~~~d~~~ 291 (538)
...|...++.+++. ..+......+..+.|+|.. .+|+.|-.| . -+||-+.+
T Consensus 160 e~~~a~p~~~i~~idl~tG~~----------------~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLKTGER----------------KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp HHHHC---EEEEEEETTT--E----------------EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred HHHhhCCCceEEEEECCCCce----------------eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 01233333433321 1111124567789999965 455555554 2 37887765
Q ss_pred CCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE-----eccCCe
Q 009266 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-----GSDCGR 366 (538)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~-----gs~dg~ 366 (538)
. ....+.+..+... .+..=.||.|+|..|.- ++.+..
T Consensus 224 d-------------------------------------g~~~~~v~~~~~~-e~~gHEfw~~DG~~i~y~~~~~~~~~~~ 265 (386)
T PF14583_consen 224 D-------------------------------------GSNVKKVHRRMEG-ESVGHEFWVPDGSTIWYDSYTPGGQDFW 265 (386)
T ss_dssp T-------------------------------------S---EESS---TT-EEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred C-------------------------------------CCcceeeecCCCC-cccccccccCCCCEEEEEeecCCCCceE
Confidence 3 1122222222221 24444556999987654 233456
Q ss_pred EEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCC----------------ceEEecCCCCcccccCccce---
Q 009266 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES----------------DIKILTPNAADRATLPTNIE--- 427 (538)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg----------------~v~vw~~~~~~~~~~~~~~~--- 427 (538)
|.-+++.+++....... .....+..+++|+++|-=+.|. -|+++++..+....+..|..
T Consensus 266 i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~ 343 (386)
T PF14583_consen 266 IAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWK 343 (386)
T ss_dssp EEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE------
T ss_pred EEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcce
Confidence 77788888765433222 2344556678888877545442 46678887765544433321
Q ss_pred ----------eeeecccCc--eeeeccCCCCCceee
Q 009266 428 ----------QVLIPDHIR--WFALGDDDDGDYYFY 451 (538)
Q Consensus 428 ----------~~~~~~~~~--~l~s~~~d~~~~~~~ 451 (538)
+-....|++ .|......|...+|.
T Consensus 344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 344 VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp -BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 111222566 556666666665554
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.24 E-value=0.00039 Score=60.30 Aligned_cols=222 Identities=12% Similarity=0.101 Sum_probs=112.8
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
+.+.+-...+..|+|.|+...++++....+.|..+++ +++.+..+..... ...-.|++... +.++++.-
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~---------~D~EgI~y~g~-~~~vl~~E 83 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF---------GDYEGITYLGN-GRYVLSEE 83 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS----------SSEEEEEE-ST-TEEEEEET
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC---------CCceeEEEECC-CEEEEEEc
Confidence 4466667779999999987678888888899999986 4777777665422 24677888765 56666665
Q ss_pred CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCC
Q 009266 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (538)
.++.+.++.+......-.. .....+. ......++..+-.++|.|.+..|..+. ..-..+|.+........+.
T Consensus 84 r~~~L~~~~~~~~~~~~~~---~~~~~~~-l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~--- 156 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDR---ADVQKIS-LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF--- 156 (248)
T ss_dssp TTTEEEEEEE----TT--E---EEEEEEE----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E---
T ss_pred CCCcEEEEEEeccccccch---hhceEEe-cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee---
Confidence 6899999998543210000 0000000 111123466799999999866665555 3345566654311000000
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceee-ccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEe
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~ 381 (538)
......+. .......+.++++....+++++.......|.+++ .+|+++..+
T Consensus 157 ---------------------------~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 157 ---------------------------VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp ---------------------------EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred ---------------------------eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 00000000 0000112567777333566777788888999999 578877665
Q ss_pred ecCc---------ceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 382 EADR---------HVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 382 ~~h~---------~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
.-.. ...-.|+|.++|++.++. .-+..++|
T Consensus 209 ~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 209 SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp E-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 4322 246789999998755554 44444443
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.20 E-value=0.0042 Score=59.19 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=47.3
Q ss_pred eeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecC-cceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 345 i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
+..++. ||+|++||.-..+|.+.|....-.+.+..+... ...+..|.|+-+...++.- ...|.+...
T Consensus 219 i~~iav-Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~ 286 (410)
T PF04841_consen 219 IIKIAV-SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP 286 (410)
T ss_pred eEEEEE-CCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC
Confidence 889998 999999999999999999887666666666544 3466788887665433333 334555443
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.16 E-value=0.00031 Score=66.75 Aligned_cols=148 Identities=11% Similarity=0.098 Sum_probs=81.7
Q ss_pred eEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe-
Q 009266 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA- 133 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw- 133 (538)
+.+....-....|.++|+|++++.++ +|...|+.....+... .+.-...+|.+ .+. +|+-...++|.|+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~------~G~g~~~vw~~--~n~-yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA------FGSGLSFVWSS--RNR-YAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE------EEE-SEEEE-T--SSE-EEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc------cCceeEEEEec--Ccc-EEEEECCCeEEEEE
Confidence 44444556689999999999999855 6788888844333211 23455678886 555 6666668889996
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
++.... .....+. ..+..|.. | .+|+..+. +.|.+||+.+++.+..+... +|..+.|++
T Consensus 96 n~~~~~-~k~i~~~---~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~i~~i~v~------------~vk~V~Ws~ 154 (443)
T PF04053_consen 96 NFKNEV-VKSIKLP---FSVEKIFG---G-NLLGVKSS-DFICFYDWETGKLIRRIDVS------------AVKYVIWSD 154 (443)
T ss_dssp TTEE-T-T-----S---S-EEEEE----S-SSEEEEET-TEEEEE-TTT--EEEEESS-------------E-EEEEE-T
T ss_pred cCcccc-ceEEcCC---cccceEEc---C-cEEEEECC-CCEEEEEhhHcceeeEEecC------------CCcEEEEEC
Confidence 443222 1111121 12344433 6 45555544 48999999999998887632 489999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCC
Q 009266 214 RNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
+ +.+++..+.+ .+.|++...
T Consensus 155 ~-g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 155 D-GELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp T-SSEEEEE-S--SEEEEEE-H
T ss_pred C-CCEEEEEeCC-eEEEEEecc
Confidence 8 6788777655 567766554
No 356
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=0.0016 Score=56.13 Aligned_cols=222 Identities=12% Similarity=0.134 Sum_probs=137.5
Q ss_pred EcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc
Q 009266 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~ 136 (538)
+.|-...|.++.|+|+.+.|++......-.||=...|+.+.++....-...-.|.|.. ++.++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig--~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG--GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec--CCEEEEEehhcceEEEEEEc
Confidence 3444556999999999999988888888888877889988887433344556778887 78888877788888888876
Q ss_pred cCceee-----eeecc--cc-CCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 137 ERGGVE-----TKLLG--KH-QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 137 ~~~~~~-----~~~~~--~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
....+. ...+. .+ ....-.++|.|.. +.|+.+-...-+.||.+.........................|.+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 553221 11121 12 5567889999988 566777676777777766333111111111100000012336788
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEee
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d 288 (538)
+.|++..+.+++.+.+.+.|.-.+..... ........ -..-......+...++..++|.+.+++--+-.+.|.
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~------g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F~ 310 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGEV-IELLSLTK------GNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRFT 310 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCCe-eeeEEecc------CCCCCcccCCCcceeEECCCCCEEEEecCCcceecc
Confidence 99998878888888888888888776542 11100000 001111123345678888888776666555444443
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.0024 Score=59.15 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=82.2
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCC-----CceEEEEeC---------C-CcEEEeecccC----ceeee
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-----DRSIVTCAA---------D-GQVRHAQILER----GGVET 143 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~~~l~s~~~---------d-g~v~vwd~~~~----~~~~~ 143 (538)
..|+|.|..+.+.+.++.-.....+.+++...+.. ..+|++|+. . |.|.++.+... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36889998888877666444555677666655332 467777753 2 88999999874 22222
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC-eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
..-....++|++|+-. .+ +++++.+ +.|++|++...+ ....-... ....+.++... +++|++|
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~g--~~l~v~~l~~~~~l~~~~~~~---------~~~~i~sl~~~---~~~I~vg 145 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAVG--NKLYVYDLDNSKTLLKKAFYD---------SPFYITSLSVF---KNYILVG 145 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEET--TEEEEEEEETTSSEEEEEEE----------BSSSEEEEEEE---TTEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEeec--CEEEEEEccCcccchhhheec---------ceEEEEEEecc---ccEEEEE
Confidence 2223456889988877 34 4444443 789999999887 33332221 11145555554 3577777
Q ss_pred eCCCeEEEEEcC
Q 009266 223 GSDEYTRLYDIR 234 (538)
Q Consensus 223 ~~dg~v~iwd~~ 234 (538)
..-..|.++...
T Consensus 146 D~~~sv~~~~~~ 157 (321)
T PF03178_consen 146 DAMKSVSLLRYD 157 (321)
T ss_dssp ESSSSEEEEEEE
T ss_pred EcccCEEEEEEE
Confidence 776667666443
No 358
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.11 E-value=0.008 Score=56.33 Aligned_cols=92 Identities=22% Similarity=0.302 Sum_probs=59.8
Q ss_pred EEEEcCCCCEEEEecCCCeEEE---EECC-CC----ceeeeec--cCCC--CCeEEEEEeec---------CCCceEEEE
Q 009266 66 TVSFNTDGDILISGSDDRRVIL---WDWK-TE----RVKLSFH--SGHN--DNVFQAKIMPF---------TDDRSIVTC 124 (538)
Q Consensus 66 ~~~~s~~g~~l~t~~~d~~i~i---w~~~-~~----~~~~~~~--~~~~--~~v~~l~~~~~---------~~~~~l~s~ 124 (538)
.++.+|++.+||.+.....+.+ |+.. .+ ....... ..+. ..|+++.|.|. .+...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999987776655 5331 11 1111111 1122 58999998885 346788999
Q ss_pred eCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 125 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
...|.|++|.. ++..+.. ..-|..+|..|.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~--Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLS--QLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHH--HhcCccceEEEEecc
Confidence 99999999986 3444433 334677777776643
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=0.00057 Score=58.22 Aligned_cols=198 Identities=16% Similarity=0.196 Sum_probs=114.8
Q ss_pred EEcCCCCEEEEecC-----CCeEEEEECCCCce-eeeeccCCCCCeEEEEEeecCCCceEEEEeCC--------------
Q 009266 68 SFNTDGDILISGSD-----DRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------------- 127 (538)
Q Consensus 68 ~~s~~g~~l~t~~~-----d~~i~iw~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-------------- 127 (538)
.|||+|.+|...-. -|.|-|||...+-. +..+ ..|.-....+.|.+ ||+.|+.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~--DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMA--DGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEec--CCcEEEEeCCceecccccCccccch
Confidence 58999999976533 37899999875543 3334 67877888999999 99999887631
Q ss_pred ----CcEEEeecccCceeeeeecc--ccCCCcEEEEEcCCCCcEEEEEcCCCc-----EEEEecCCCCeeeeeeecccCC
Q 009266 128 ----GQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDGL-----VQHFDLRTGAATELFTCRPIDD 196 (538)
Q Consensus 128 ----g~v~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~ 196 (538)
-.+.+.+..++..+.+.++. .+.-.|+.+...+++ .+++.+-..|. -.+=-...++.++.+...+..
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~- 274 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQ- 274 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHH-
Confidence 12334444455555555554 455668888888888 44443322221 111112333333333221110
Q ss_pred CCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE
Q 009266 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (538)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 276 (538)
.......|-+|+.+...+...+++-..+...+||..++.+.....+ .....++-- .+-+.
T Consensus 275 --~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-----------------~daaGva~~-~~gf~ 334 (366)
T COG3490 275 --TAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-----------------PDAAGVAAA-KGGFA 334 (366)
T ss_pred --HHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-----------------cccccceec-cCceE
Confidence 0002235778888876565666666667788999999875332110 011222222 23466
Q ss_pred EEEcCCeEEEeecc
Q 009266 277 VSYNDEFIYLFTQD 290 (538)
Q Consensus 277 ~~~~~~~i~~~d~~ 290 (538)
++.+.|.+..+.-.
T Consensus 335 vssg~G~~~~~s~~ 348 (366)
T COG3490 335 VSSGQGRIIFYSRA 348 (366)
T ss_pred EecCCceEEecccc
Confidence 77778888887543
No 360
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=98.10 E-value=0.008 Score=56.47 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=87.9
Q ss_pred CCEEEEecCCCeEEEEECCCCcee---eeeccCCCCCeEEEEEeec---CCCceEEEEeCCCcEEEeecccCc-------
Q 009266 73 GDILISGSDDRRVILWDWKTERVK---LSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERG------- 139 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~---~~~~~~~~~~v~~l~~~~~---~~~~~l~s~~~dg~v~vwd~~~~~------- 139 (538)
...|++||..|.++||....+... .-+...-..+|..|..-++ .....||+ -.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998544311 1111234568888876543 12233444 445678888873221
Q ss_pred eeeeeeccccC--CCcEEEEEcC----CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 140 GVETKLLGKHQ--GRAHKLAIEP----GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 140 ~~~~~~~~~~~--~~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
......+..|. .....+++-| .++.+|.+-+.||.+.+|+-+.-.....+... - . ...++|.|
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~---l-----l---PgPl~Y~~ 184 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF---L-----L---PGPLCYCP 184 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC---C-----C---CcCeEEee
Confidence 11111122232 2233344433 22467888999999999986544332222210 0 1 24567777
Q ss_pred CCCcEEEEEeCCCeEEEEEcCC
Q 009266 214 RNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
. ...|++++....|..|....
T Consensus 185 ~-tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 185 R-TDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred c-CCEEEEecCceeEEEecHHH
Confidence 6 57888888888898888754
No 361
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.10 E-value=0.011 Score=59.58 Aligned_cols=355 Identities=13% Similarity=0.095 Sum_probs=167.5
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCC----ceEEEEeCCCcEEEeeccc
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD----RSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~----~~l~s~~~dg~v~vwd~~~ 137 (538)
+.+++.+.+.+...++.++..+.+....+..+.........-...|.|+.++|..++ ++++.|..+..+.+.-...
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 445555555566677777776777777766655333332334568999999984333 3677787766655544332
Q ss_pred Cceeeeee-ccc--cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC--CCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 138 RGGVETKL-LGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT--GAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 138 ~~~~~~~~-~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
......+. +.. -...|.-..|-.+. ++|+++..||.+..|-+.. ++....-+. +....++.--.|+
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~--------~lGt~P~~Lr~f~ 638 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVLDINTGQLSDRKKV--------TLGTQPISLRTFS 638 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEEEcccceEcccccc--------ccCCCCcEEEEEe
Confidence 22222211 211 12334444555555 7899999999988776544 332211110 1122244444555
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEE-EEEcCC--CCEEEEEcCCeEEEeec
Q 009266 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG-LAFSDQ--SELLVSYNDEFIYLFTQ 289 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~--~~~l~~~~~~~i~~~d~ 289 (538)
..+++.+++. .|+-..+|..+..-.. .+... ..+.. ..|+.+ ...|+++..+.+++.-+
T Consensus 639 sk~~t~vfa~-sdrP~viY~~n~kLv~------------spls~-----kev~~~c~f~s~a~~d~l~~~~~~~l~i~ti 700 (1096)
T KOG1897|consen 639 SKSRTAVFAL-SDRPTVIYSSNGKLVY------------SPLSL-----KEVNHMCPFNSDAYPDSLASANGGALTIGTI 700 (1096)
T ss_pred eCCceEEEEe-CCCCEEEEecCCcEEE------------eccch-----HHhhhhcccccccCCceEEEecCCceEEEEe
Confidence 5434444443 4444555554432110 00000 00111 112222 34566777666666655
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCC---------CCCCCc--------ccCCceeeccc-----cceeeeE
Q 009266 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS---------TANTDV--------RIAPQVYKGHR-----NCVTVKG 347 (538)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--------~~~~~~~~~~~-----~~~~i~~ 347 (538)
..-..... +..|....+...+..+....+...+ ...... .+....+..|. ....+.+
T Consensus 701 d~iqkl~i-rtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s 779 (1096)
T KOG1897|consen 701 DEIQKLHI-RTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIIS 779 (1096)
T ss_pred cchhhcce-eeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeee
Confidence 43221111 0011111111111111000000000 000000 11112222222 2223555
Q ss_pred EEEecCC-CcEEEEec----------cCCeEEEeeccCcceeEEeecC--cceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 348 VNFFGPK-CEYVVSGS----------DCGRIFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 348 v~~~s~~-~~~l~~gs----------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
+.| ..+ +.++++|+ ..|+|.||....++.++....+ .+.|.++.. -+|++||.-+ ..|++|+.
T Consensus 780 ~~~-~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In--~~vrLye~ 855 (1096)
T KOG1897|consen 780 CKF-TDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGIN--QSVRLYEW 855 (1096)
T ss_pred eee-cCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecC--cEEEEEEc
Confidence 667 555 77888876 3488999988775444444322 245555543 2567777654 68999998
Q ss_pred CCCcccc-cCccceeeee--cccCc-eeeeccCCCCCc
Q 009266 415 NAADRAT-LPTNIEQVLI--PDHIR-WFALGDDDDGDY 448 (538)
Q Consensus 415 ~~~~~~~-~~~~~~~~~~--~~~~~-~l~s~~~d~~~~ 448 (538)
.+.+... -..+...+.. +...+ .++.|..-+..-
T Consensus 856 t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 856 TTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSIT 893 (1096)
T ss_pred cccceehhhhcccCCeEEEEEEecCcEEEEeeccceEE
Confidence 8874333 2333333333 33333 677766655433
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0095 Score=56.43 Aligned_cols=266 Identities=12% Similarity=0.142 Sum_probs=161.4
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
+.+++..+......+ ..+. ....+.+.| .+..++... ....+.+.+.. ...... ....-......+++++.++
T Consensus 13 ~~v~~~~~~~~~~~~-~~~~-~~~~v~~~~--~g~~~~v~~~~~~~~~~~~~~-~n~~~~-~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAI-SLGR-GPGGVAVNP--DGTQVYVANSGSNDVSVIDAT-SNTVTQ-SLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEe-ecCC-CCceeEEcC--ccCEEEEEeecCceeeecccc-cceeee-eccCCCccccceeeCCCCC
Confidence 666666655554444 2222 556667777 665444433 22245555544 211111 1111114456788899887
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCccccCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~ 241 (538)
+.+++......|.+.|..+.+......... ....++++|+++.+.++-. .++++.+.|..+.++...
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-----------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-----------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc-----------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 677777778999999988877776665322 3578999998545555544 368899999888765332
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccc
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
... + ..+ ..+++.|+|..+..+. .+.|.+++........ .
T Consensus 156 ~~v--------------G-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~-------------------- 197 (381)
T COG3391 156 IPV--------------G-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--G-------------------- 197 (381)
T ss_pred Eec--------------C-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--c--------------------
Confidence 111 1 122 7899999999776665 6689999966532110 0
Q ss_pred cCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC---CeEEEeeccCcceeEE-eecCcceeeEEeecC
Q 009266 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRV-IEADRHVVNCIEPHP 395 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d---g~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~ 395 (538)
........... -..+.+ +|+|+++.+.... +.+.+.+..++..... +.........+..+|
T Consensus 198 -----------~~~~~~~~~~~---P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 198 -----------SVGSLVGVGTG---PAGIAV-DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred -----------ccccccccCCC---CceEEE-CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 00001111111 245566 8999966654433 5899999988877765 221111467789999
Q ss_pred CCCeEEEeec-CCceEEecCCCCccc
Q 009266 396 HSTVLASSGI-ESDIKILTPNAADRA 420 (538)
Q Consensus 396 ~~~~l~s~~~-dg~v~vw~~~~~~~~ 420 (538)
+|+.+.+... .+.|.+-+..+....
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCcee
Confidence 9998877744 478888887765443
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.06 E-value=0.012 Score=56.14 Aligned_cols=177 Identities=10% Similarity=0.050 Sum_probs=90.0
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeee-----ccccCCCcEEEEE
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL-----LGKHQGRAHKLAI 158 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-----~~~~~~~v~~~~~ 158 (538)
.|+||+.. |+.+.++.-.+ +.|.++.|+. ...|++...+|.++++++.... ..... ..-....+....+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~---~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTD---DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCC-CCEeEEEEECC-CCEEEEEECC---CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccccccc
Confidence 59999955 77766663333 8999999985 5677777889999999986322 11000 0111122223344
Q ss_pred cCCCCcEEEEEcCCCcEEEEecCCCC-eeeeeeecccCCCCCcceeeeeEE-EEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 159 EPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNA-IAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
...| ++.-..++.+.+..--... ....+...+......+... .+.. ..++.+ ....+.....+.+.+.+....
T Consensus 136 ~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~-~~~~i~~l~~~-~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 136 YKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP-SWTVIPLLSSD-RVVEILLANGETIYIIDENSF 210 (410)
T ss_pred CCCC---EEEECCCCeEEEEeCccccchhhccccCCCccccccccc-ccccceEeecC-cceEEEEecCCEEEEEEcccc
Confidence 4455 2333344444444322211 1111110000000000010 1111 234443 344444455566664443321
Q ss_pred cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeecc
Q 009266 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (538)
+ . . ...+++..+++||+|++||... .|.+.+....
T Consensus 211 ~-----------------~-i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 211 K-----------------Q-I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred c-----------------c-c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 1 0 1 1245799999999999999888 4677777644
No 364
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00025 Score=67.10 Aligned_cols=190 Identities=18% Similarity=0.134 Sum_probs=112.7
Q ss_pred ccccCCCcEEEEEcCCCCcEEEEEcCC---CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE
Q 009266 146 LGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
+......+..-+|+|++..+.+..-.. ..+.++++.+++......... .-..-+|+|++.+++++.
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g-----------~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG-----------NNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC-----------ccCCccCCCCCCEEEEEE
Confidence 333445566778999885543332222 459999999988766665322 345668999976777777
Q ss_pred eCCCe--EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC--C--eEEEeeccCCCCCC
Q 009266 223 GSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPN 296 (538)
Q Consensus 223 ~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~--~i~~~d~~~~~~~~ 296 (538)
..+|. |.++|+...++.+ +....+.-..-.|+|+|+.|+..++ | .|++++.....
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~----------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--- 317 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPR----------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--- 317 (425)
T ss_pred CCCCCccEEEEcCCCCccee----------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc---
Confidence 77876 4555666554211 1111222235679999999988874 3 46666665431
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC-Ce--EEEeecc
Q 009266 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GR--IFIWKKK 373 (538)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d-g~--i~iwd~~ 373 (538)
...+...... -..-.+ +|+|++|+..+.. |. |.+.++.
T Consensus 318 ------------------------------------~~riT~~~~~--~~~p~~-SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 318 ------------------------------------VTRLTFSGGG--NSNPVW-SPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred ------------------------------------eeEeeccCCC--CcCccC-CCCCCEEEEEeccCCceeeEEeccC
Confidence 1222222111 112334 9999999876643 44 6667766
Q ss_pred CcceeEEeecCcceeeEEeecCCCCeEEEeec
Q 009266 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (538)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (538)
++..++.+. +......-.|.|+++.|...+.
T Consensus 359 ~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 359 SGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 665444443 3334556678888887665543
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.02 E-value=0.00057 Score=68.73 Aligned_cols=204 Identities=11% Similarity=0.087 Sum_probs=115.9
Q ss_pred CEEEE-ecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeec---CCCceEEEEeCCCcEEEeecccCc--eeeee-ec
Q 009266 74 DILIS-GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERG--GVETK-LL 146 (538)
Q Consensus 74 ~~l~t-~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~-~~ 146 (538)
++|+. ......|+-.|+..|+.+..+......+|..++-... ......+.|-.+..+..||.+-.. .+... ..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 34443 3345778889999999988884333334555432210 023456677778899999988543 22110 11
Q ss_pred cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC
Q 009266 147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (538)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 226 (538)
.......+|++-..+| .||+|+.+|.||+||--..+....++ + -..+|..|..+.+ |++|++.+ +.
T Consensus 574 Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp--------~--lG~pI~~iDvt~D-GkwilaTc-~t 639 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALP--------G--LGDPIIGIDVTAD-GKWILATC-KT 639 (794)
T ss_pred cccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCC--------C--CCCCeeEEEecCC-CcEEEEee-cc
Confidence 1244568888888887 58999999999999943222222222 1 2348999999998 56665544 45
Q ss_pred eEEEEEcC--CccccCCCCCCCCCc-----ccCCCCccC----------CCccceEEEEEcC----CCCEEEEEcCCeEE
Q 009266 227 YTRLYDIR--KYKWDGSTDFGQPAD-----YFCPPNLIG----------DEQVGITGLAFSD----QSELLVSYNDEFIY 285 (538)
Q Consensus 227 ~v~iwd~~--~~~~~~~~~~~~~~~-----~~~~~~~~~----------~~~~~i~~~~~s~----~~~~l~~~~~~~i~ 285 (538)
.|.|+++. .++-.+...|..... ......+.. ...-..+...|+. ..+.|++++...+.
T Consensus 640 yLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v 719 (794)
T PF08553_consen 640 YLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVV 719 (794)
T ss_pred eEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEE
Confidence 77787764 222222222211110 000011111 1112334455542 34577777788999
Q ss_pred EeeccC
Q 009266 286 LFTQDM 291 (538)
Q Consensus 286 ~~d~~~ 291 (538)
+|++..
T Consensus 720 ~Wnf~k 725 (794)
T PF08553_consen 720 TWNFKK 725 (794)
T ss_pred EEEHHH
Confidence 999875
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.014 Score=55.26 Aligned_cols=267 Identities=14% Similarity=0.131 Sum_probs=159.6
Q ss_pred cEEEEEEcCCCCEEEEe-cCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEE-EEeCCCcEEEeecccCce
Q 009266 63 CVNTVSFNTDGDILISG-SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGG 140 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~-~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~-s~~~dg~v~vwd~~~~~~ 140 (538)
....+.+.|.+..+... .....+...+.. ..........-...-..+++++ .+..++ +....+.|.+.+..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~--~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNP--AGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCC--CCCeEEEecCCCCeEEEEcCcccce
Confidence 55667788888444333 222345555544 2222221111113445677887 777554 444568999999777666
Q ss_pred eeeeeccccCCCcEEEEEcCCCCcEEEEEc--CCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
....... . ....+++.|+++.+.++-. .++++.+.|..+.+.+.....-. .+ ..+++.|++...
T Consensus 109 ~~~~~vG-~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~----------~P-~~~a~~p~g~~v 174 (381)
T COG3391 109 LGSIPVG-L--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN----------TP-TGVAVDPDGNKV 174 (381)
T ss_pred eeEeeec-c--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC----------Cc-ceEEECCCCCeE
Confidence 5543222 2 6678999999965555555 36899999999888877744211 13 789999985445
Q ss_pred EEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC----CeEEEeeccCCCC
Q 009266 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDMGLG 294 (538)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----~~i~~~d~~~~~~ 294 (538)
+++-..++.|.+.+........ ... .. ..........+.++|+|..+..... +.+...+..++..
T Consensus 175 yv~~~~~~~v~vi~~~~~~v~~-~~~---------~~-~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 175 YVTNSDDNTVSVIDTSGNSVVR-GSV---------GS-LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEEecCCCeEEEEeCCCcceec-ccc---------cc-ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 5555688999999977665331 000 00 0111234567889999986665542 3677777665321
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-cCCeEEEeecc
Q 009266 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK 373 (538)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-~dg~i~iwd~~ 373 (538)
... .+..... ....+.+ +|.|+++.+.. ..+.+.+.+..
T Consensus 244 ~~~-------------------------------------~~~~~~~--~~~~v~~-~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 244 TAT-------------------------------------DLPVGSG--APRGVAV-DPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred EEe-------------------------------------ccccccC--CCCceeE-CCCCCEEEEEecCCCeEEEEeCC
Confidence 110 0111110 1334566 89999888774 45889999998
Q ss_pred CcceeEEeecCc---ceeeEEeecCCC
Q 009266 374 GGELIRVIEADR---HVVNCIEPHPHS 397 (538)
Q Consensus 374 ~~~~~~~~~~h~---~~v~~~~~s~~~ 397 (538)
+......+.... ..+..+++.+..
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 284 TDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred CCceeeeecccccccccceeccceeec
Confidence 888777665433 245566665543
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.96 E-value=0.0083 Score=58.01 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=72.4
Q ss_pred cEEEEEEcCCCCEEEEe-cC----CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC---------
Q 009266 63 CVNTVSFNTDGDILISG-SD----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--------- 128 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~-~~----d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg--------- 128 (538)
.+..+++||+|++||.+ +. ...|+++|+.+|+.+...+... ....+.|.+ +++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~--d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD--DGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT--TSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC--CCCEEEEEEeCcccccccCCC
Confidence 44568899999998854 22 2469999999998765432221 223399999 877776655332
Q ss_pred --cEEEeecccCceeeeeeccccCCC--cEEEEEcCCCCcEEEEEcCC---CcEEEEecCCC
Q 009266 129 --QVRHAQILERGGVETKLLGKHQGR--AHKLAIEPGSPHVFYTCGED---GLVQHFDLRTG 183 (538)
Q Consensus 129 --~v~vwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~ 183 (538)
.|+.|.+.+........+...... ...+..++++..+++..... ..|.+.++..+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 377888776544322334443333 56788899996555544443 34788888765
No 368
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.95 E-value=0.007 Score=52.31 Aligned_cols=217 Identities=13% Similarity=0.036 Sum_probs=120.6
Q ss_pred EEeeeeeEEcCC-cCcEEEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe
Q 009266 49 LRLGIYAKLDKH-RGCVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 49 ~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~t~~~d~--~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
..+++++++... ..-...+.|..+|.++-+.+.-| .|+.+++.+|+.+....-...----.|+.. +++...-.=
T Consensus 31 ~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTW 107 (264)
T PF05096_consen 31 YSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEES
T ss_pred eeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEe
Confidence 345666666522 34567788878888888887766 699999999987655422222222233443 334444444
Q ss_pred CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeee
Q 009266 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
..+...+||..+-+.+....+. ..=..|+ .++..+ +.......|+++|..+.+....+....... ....
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~L-i~SDGS~~L~~~dP~~f~~~~~i~V~~~g~-----pv~~ 176 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKRL-IMSDGSSRLYFLDPETFKEVRTIQVTDNGR-----PVSN 176 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S---SS--EEE--ECSSCE-EEE-SSSEEEEE-TTT-SEEEEEE-EETTE-----E---
T ss_pred cCCeEEEEccccceEEEEEecC---CcceEEE--cCCCEE-EEECCccceEEECCcccceEEEEEEEECCE-----ECCC
Confidence 5789999999887777664443 3445565 345344 444445789999999888777766542211 2224
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC
Q 009266 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (538)
++-+.|.. |.+.|-.-....|...|..++++.....+..................-.+.||+.|....|...+.
T Consensus 177 LNELE~i~--G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 177 LNELEYIN--GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEET--TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cEeEEEEc--CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 66677763 566666666677777788877765543332211100000111112456899999987665554443
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0062 Score=55.01 Aligned_cols=227 Identities=16% Similarity=0.095 Sum_probs=119.4
Q ss_pred EEeecCCCc-eEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeee
Q 009266 111 KIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELF 189 (538)
Q Consensus 111 ~~~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 189 (538)
.|.+ +.. ++.+--..+.|.-|+..+++... +. +...+.++.....+ ..|+++.. -++++++.++..+..+
T Consensus 31 ~w~~--~~~~L~w~DI~~~~i~r~~~~~g~~~~---~~-~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDP--DRGALLWVDILGGRIHRLDPETGKKRV---FP-SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcC--CCCEEEEEeCCCCeEEEecCCcCceEE---EE-CCCCcccceeecCC-CeEEEEcc--ccEEEeccCCceeEEe
Confidence 3555 555 34444456788888876554322 22 22333444443333 24555543 3667777666553332
Q ss_pred eecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC-----------CCeEEEEEcCCccccCCCCCCCCCcccCCCCccC
Q 009266 190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-----------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
....... .....+.+...|+ |.+.++... -|.|+.++. .+. ...+..
T Consensus 102 ~~~~~~~-----~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~---------------~~~l~~ 159 (307)
T COG3386 102 AEPEDGL-----PLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG---------------VVRLLD 159 (307)
T ss_pred ccccCCC-----CcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcC-CCC---------------EEEeec
Confidence 2211110 1124667888887 445444332 122333332 121 112222
Q ss_pred CCccceEEEEEcCCCCEEEEEcC--CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCcee
Q 009266 259 DEQVGITGLAFSDQSELLVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (538)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
.+-...++|+|||+++.|..+.. +.|+.|++...... . ........
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~-~-------------------------------~~~~~~~~ 207 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP-I-------------------------------GGRRGFVD 207 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc-c-------------------------------CCcceEEE
Confidence 23445678999999987777663 57777776520000 0 01111111
Q ss_pred e-ccccceeeeEEEEecCCCcEEEEeccCC-eEEEeeccCcceeEEeecCcceeeEEeec-CCCCeEEEee
Q 009266 337 K-GHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSG 404 (538)
Q Consensus 337 ~-~~~~~~~i~~v~~~s~~~~~l~~gs~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~ 404 (538)
. .... ..-.++. ..+|.+-+++-..| .|.+|+.. |+++..+..+...+++++|- |+.+.|...+
T Consensus 208 ~~~~~G--~PDG~~v-DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 208 FDEEPG--LPDGMAV-DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ccCCCC--CCCceEE-eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 1 1111 1334555 77888776555554 89999987 99999988876788888885 4555544443
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.88 E-value=0.001 Score=48.60 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=69.4
Q ss_pred EEEEEEcC---CC-CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 64 VNTVSFNT---DG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 64 v~~~~~s~---~g-~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
|++|++.. +| ..|+.||.|..||+|+- ...+..+ .-...|++|+-.. +..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei--~e~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEI--TETDKVTSLCSLG---GGRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEE--ecccceEEEEEcC---CCEEEEEecCCEEEEEeCccee
Confidence 67777765 32 58999999999999973 3555555 3456788888875 4789999999999999864332
Q ss_pred eeeeeeccccCCCcEEEEEcC---CCCcEEEEEcCCCcEEE
Q 009266 140 GVETKLLGKHQGRAHKLAIEP---GSPHVFYTCGEDGLVQH 177 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~dg~i~i 177 (538)
.. .+ ....+.++++.. +|..-|++|-.+|.|-+
T Consensus 75 WR----iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WR----IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ee----ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 21 22 223355665543 44446888888887643
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.85 E-value=0.011 Score=53.43 Aligned_cols=248 Identities=11% Similarity=0.079 Sum_probs=126.7
Q ss_pred CCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeee-cccC
Q 009266 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC-RPID 195 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 195 (538)
.++.|+.|+.+| |.++++........ .. +...|..+...|.-. +|++-+ |+.|+++++..-........ ....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~-i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTR-IL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcccee-Ee--ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccc
Confidence 678999999888 88888832222111 11 233499999999773 444443 49999999987655442110 0000
Q ss_pred C---CCCcceeeeeEEEE--EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEc
Q 009266 196 D---RRNYMTVVNLNAIA--IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (538)
Q Consensus 196 ~---~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 270 (538)
. .........+..++ -.+. +...++.....+|.+|.......... .. ...+ .-...+.+++|.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~-~~~~L~va~kk~i~i~~~~~~~~~f~----~~-----~ke~--~lp~~~~~i~~~ 147 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHE-GSRRLCVAVKKKILIYEWNDPRNSFS----KL-----LKEI--SLPDPPSSIAFL 147 (275)
T ss_pred cccccccccccCCeeEEeeccccc-cceEEEEEECCEEEEEEEECCccccc----ce-----eEEE--EcCCCcEEEEEe
Confidence 0 00000111334444 1222 33444444555899998876421100 00 0010 113578888888
Q ss_pred CCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE
Q 009266 271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 271 ~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
+..|+.+..+...+.++.++.....+..... .............+..+..
T Consensus 148 --~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 197 (275)
T PF00780_consen 148 --GNKICVGTSKGFYLIDLNTGSPSELLDPSDS----------------------------SSSFKSRNSSSKPLGIFQL 197 (275)
T ss_pred --CCEEEEEeCCceEEEecCCCCceEEeCccCC----------------------------cchhhhcccCCCceEEEEe
Confidence 5678888777888999886432211110000 0000000011111333332
Q ss_pred ecCCCcEEEEeccCCeEEEeeccCcceeE--EeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccc
Q 009266 351 FGPKCEYVVSGSDCGRIFIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (538)
Q Consensus 351 ~s~~~~~l~~gs~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 421 (538)
+++.+|++-. ..-.+.+ ..|++.+ .+.... .+.++++. .++|+..+. +.|.||++.++++..
T Consensus 198 --~~~e~Ll~~~--~~g~fv~-~~G~~~r~~~i~W~~-~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 198 --SDNEFLLCYD--NIGVFVN-KNGEPSRKSTIQWSS-APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred --CCceEEEEec--ceEEEEc-CCCCcCcccEEEcCC-chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence 4567777543 2223333 3555443 344333 45566663 357777666 559999999986643
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.84 E-value=0.0012 Score=66.52 Aligned_cols=147 Identities=9% Similarity=0.134 Sum_probs=88.5
Q ss_pred CcEEEEE-eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC------CCCEEEEEcCCeEEEee
Q 009266 216 ANLFAVA-GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD------QSELLVSYNDEFIYLFT 288 (538)
Q Consensus 216 ~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~~~i~~~d 288 (538)
.++|+.. .....|+-.|+..++++....+.. ..+|..++-.. ..+.++..+.+.+..||
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~--------------~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHD--------------DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCC--------------CcceeEecccccccccCCCceEEEECCCceEEec
Confidence 3444433 456788999999888654433321 22233332211 23456667788999999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
.+....... ....+.+.... ...+++- +.+| +||+|+.+|.||
T Consensus 559 pR~~~~k~v--------------------------------~~~~k~Y~~~~---~Fs~~aT-t~~G-~iavgs~~G~IR 601 (794)
T PF08553_consen 559 PRLSGNKLV--------------------------------DSQSKQYSSKN---NFSCFAT-TEDG-YIAVGSNKGDIR 601 (794)
T ss_pred cCCCCCcee--------------------------------eccccccccCC---CceEEEe-cCCc-eEEEEeCCCcEE
Confidence 875310000 00112222111 2566665 5555 899999999999
Q ss_pred EeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
+|+.-..+....|++-..+|..|..+.+|++|++.+. ..|.|++.
T Consensus 602 Lyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 602 LYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred eecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 9995433334456676789999999999998776654 45555553
No 373
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.82 E-value=0.033 Score=53.14 Aligned_cols=158 Identities=11% Similarity=0.092 Sum_probs=87.7
Q ss_pred cCcEEEEEEcCCCCEE-EEec--CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecC--CCceEEEEeCCCcEEEeec
Q 009266 61 RGCVNTVSFNTDGDIL-ISGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT--DDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l-~t~~--~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~~l~s~~~dg~v~vwd~ 135 (538)
-.+|..++|. ||+.+ +|.- ..|.++.=| .+.+ +.-..|..+.|.|.. +-..|++......|.||.+
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 4578899996 55544 4431 122222211 1222 344569999999831 2335666666789999998
Q ss_pred ccC-----ceeeeeecc---ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 136 LER-----GGVETKLLG---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 136 ~~~-----~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
... +.+...+.. ...--...+.|+|.. .+|++-.....-.+++++........... ..+.|.
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~---------~~G~Ih 159 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIK---------TSGLIH 159 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEecc---------CCceEE
Confidence 622 222111100 011123467899988 45555544444455566544333222211 344799
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCcc
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
|.+|.++|.+++++.+..=.-+|||-....
T Consensus 160 CACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 160 CACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred EEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 999999966666666665567888866543
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.80 E-value=7.4e-05 Score=43.72 Aligned_cols=37 Identities=43% Similarity=0.760 Sum_probs=33.1
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
+...+..|...|+++.|.|.+.++++++.++.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3466778999999999999999999999999999995
No 375
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.79 E-value=0.0051 Score=56.99 Aligned_cols=145 Identities=9% Similarity=0.071 Sum_probs=90.7
Q ss_pred CCEEEEecC----------CCeEEEEECCCC-----ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 73 GDILISGSD----------DRRVILWDWKTE-----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 73 g~~l~t~~~----------d~~i~iw~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
..+|+.|.. .|.|.++.+... +..........++|++|+-- .+. |+++. .+.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~---~~~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF---NGR-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE---TTE-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh---CCE-EEEee-cCEEEEEEccC
Confidence 467776643 289999999884 22222223567889998876 455 44333 37999999988
Q ss_pred Cc-eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe-eeeeeecccCCCCCcceeeeeEEEEEcCCC
Q 009266 138 RG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (538)
Q Consensus 138 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 215 (538)
.+ ......+. ....+.++.... .+++.|..-..|.++....... +..+.. .. ....++++.|-+++
T Consensus 117 ~~~l~~~~~~~-~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~-------~~~~v~~~~~l~d~ 184 (321)
T PF03178_consen 117 SKTLLKKAFYD-SPFYITSLSVFK---NYILVGDAMKSVSLLRYDEENNKLILVAR-DY-------QPRWVTAAEFLVDE 184 (321)
T ss_dssp TSSEEEEEEE--BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTTE-EEEEEE-ES-------S-BEEEEEEEE-SS
T ss_pred cccchhhheec-ceEEEEEEeccc---cEEEEEEcccCEEEEEEEccCCEEEEEEe-cC-------CCccEEEEEEecCC
Confidence 87 44433232 333566666653 4788888878888876554222 222221 11 23368889998663
Q ss_pred CcEEEEEeCCCeEEEEEcCC
Q 009266 216 ANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 216 ~~~l~~~~~dg~v~iwd~~~ 235 (538)
..++++..+|.|.++....
T Consensus 185 -~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 185 -DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SEEEEEETTSEEEEEEE-S
T ss_pred -cEEEEEcCCCeEEEEEECC
Confidence 6999999999999999864
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.78 E-value=7.6e-05 Score=43.68 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=34.6
Q ss_pred cceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
++++..+..|...|+++.|++.++++++++.++.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778889999999999999999999999999996
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=8.9e-05 Score=61.02 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=50.7
Q ss_pred CCCcEEEEeccCCeEEEeeccCcceeEEeecCc-ceeeEEeecCCCCeEEEe--ecCCceEEecCCC
Q 009266 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR-HVVNCIEPHPHSTVLASS--GIESDIKILTPNA 416 (538)
Q Consensus 353 ~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~--~~dg~v~vw~~~~ 416 (538)
.++.+..++..+|.||.|+++..+.+.....|. .++..+..+..+++|+.+ |.+..++.|++..
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 345578889999999999999999888877777 566666666677777777 7788888888764
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.028 Score=50.86 Aligned_cols=195 Identities=15% Similarity=0.194 Sum_probs=107.0
Q ss_pred EEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee-
Q 009266 67 VSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK- 144 (538)
Q Consensus 67 ~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~- 144 (538)
-.|.++.. ++.+--..+.|.-|+..+++... + .+...+.++.... .+..|+++.. .+.++++.++..+...
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~--~~p~~~~~~~~~d--~~g~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-F--PSPGGFSSGALID--AGGRLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-E--ECCCCcccceeec--CCCeEEEEcc--ccEEEeccCCceeEEec
Confidence 34677666 44555567889999988776422 2 2333445555443 5556666553 3566666544442111
Q ss_pred -eccc-cCCCcEEEEEcCCCCcEEEEEcC-----------CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 145 -LLGK-HQGRAHKLAIEPGSPHVFYTCGE-----------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 145 -~~~~-~~~~v~~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
...+ .....+.+.+.|+|. +.++... -|.|+.++. .+.....+.. +-..-+.|+|
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~----------~~~~~NGla~ 170 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD----------DLTIPNGLAF 170 (307)
T ss_pred cccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC----------cEEecCceEE
Confidence 1111 224567888999984 4333222 133444433 3444433332 1224578999
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCC--ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CC-eEEEe
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLF 287 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~-~i~~~ 287 (538)
+|++..++++=+..+.|+-|++.. +..... ..........+..-.++...+|.+.+++. .+ .|.+|
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----------~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGR----------RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcccCccCCc----------ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 999545555555668888888763 111000 11111122345666788888888876544 33 89999
Q ss_pred ecc
Q 009266 288 TQD 290 (538)
Q Consensus 288 d~~ 290 (538)
+..
T Consensus 241 ~pd 243 (307)
T COG3386 241 NPD 243 (307)
T ss_pred CCC
Confidence 876
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.68 E-value=0.0038 Score=45.66 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=68.0
Q ss_pred CeEEEEEeecCC--CceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC
Q 009266 106 NVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (538)
Q Consensus 106 ~v~~l~~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (538)
.|++|++..+.. .+.|++|+.|..||+|+-.. .+.. + .-+..|++++-...+ .|+.+..+|+|-+|+-.
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--i-~e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~-- 71 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--I-TETDKVTSLCSLGGG--RFAYALANGTVGVYDRS-- 71 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--E-ecccceEEEEEcCCC--EEEEEecCCEEEEEeCc--
Confidence 367888876422 26899999999999998432 2222 2 245678888877764 58999999999999753
Q ss_pred CeeeeeeecccCCCCCcceeeeeEEEEEc---CCCCcEEEEEeCCCeEE
Q 009266 184 AATELFTCRPIDDRRNYMTVVNLNAIAID---PRNANLFAVAGSDEYTR 229 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~v~ 229 (538)
..+..++. ...+.++++. .++-.-|++|-.+|.|-
T Consensus 72 ~RlWRiKS-----------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKS-----------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeecc-----------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22333331 1134555544 33345788998888874
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00026 Score=66.91 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=78.4
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeE-EEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF-QAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
.-.|.-+.|+|.-.+||++..+|.|.+..+. .+.+.++ .-|...++ +++|.| +|++||.|-.||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRP--DGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecC--CCCEEEEEecCCeEEEEEccCCC
Confidence 3568889999999999999999999999988 6666777 44666777 999999 99999999999999999999887
Q ss_pred eeeeeeccccCCCcEEEEEcC
Q 009266 140 GVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~ 160 (538)
.+... .......|.++.|.+
T Consensus 96 ~l~~~-~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSF-LFSVETDISKGIWDR 115 (665)
T ss_pred ceecc-ccccccchheeeccc
Confidence 76543 233456788888875
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.61 E-value=0.064 Score=51.90 Aligned_cols=253 Identities=15% Similarity=0.098 Sum_probs=124.3
Q ss_pred eEEEEEeecCCCceEEEE-eCCC----cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC---------
Q 009266 107 VFQAKIMPFTDDRSIVTC-AADG----QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--------- 172 (538)
Q Consensus 107 v~~l~~~~~~~~~~l~s~-~~dg----~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------- 172 (538)
+..++++| ++++||.+ +..| .|+++|+.+++.+... +... ....+.|.+++..++++....
T Consensus 126 ~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 126 LGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeeeeECC--CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34567888 99988855 3333 5999999998665432 2211 223499999985555555332
Q ss_pred -CcEEEEecCCCCee--eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE-EEeCCC---eEEEEEcCCccccCCCCCC
Q 009266 173 -GLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDE---YTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 173 -g~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg---~v~iwd~~~~~~~~~~~~~ 245 (538)
..|+.|.+.+.... ..+..... ......+..++++ ++|+ ...... .|.+.++.....
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~--------~~~~~~~~~s~d~-~~l~i~~~~~~~~s~v~~~d~~~~~~------- 264 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDE--------PFWFVSVSRSKDG-RYLFISSSSGTSESEVYLLDLDDGGS------- 264 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTC--------TTSEEEEEE-TTS-SEEEEEEESSSSEEEEEEEECCCTTT-------
T ss_pred CcEEEEEECCCChHhCeeEEeecCC--------CcEEEEEEecCcc-cEEEEEEEccccCCeEEEEeccccCC-------
Confidence 23788888776543 23332211 1125678889984 5544 444333 467777765310
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC----CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
+. ..+..+... ...+....-+..+.+++.... +.|...++.....
T Consensus 265 -~~--~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~--------------------------- 313 (414)
T PF02897_consen 265 -PD--AKPKLLSPR-EDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP--------------------------- 313 (414)
T ss_dssp -SS---SEEEEEES-SSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG---------------------------
T ss_pred -Cc--CCcEEEeCC-CCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccc---------------------------
Confidence 00 001111111 122222222224444444432 2455555544210
Q ss_pred CCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCC--eEEEeeccCcceeEEeec-CcceeeEEeecCCCC
Q 009266 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG--RIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHST 398 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg--~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~ 398 (538)
......+..+.....+..+..+ .+.+++....++ .|+++++..+.....+.. -.+.|..+...+.+.
T Consensus 314 --------~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 314 --------AEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp --------GGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred --------ccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCC
Confidence 0111244444443345565541 233444444443 688999883444444433 234567777667666
Q ss_pred eE-EEe-ec--CCceEEecCCCCcccc
Q 009266 399 VL-ASS-GI--ESDIKILTPNAADRAT 421 (538)
Q Consensus 399 ~l-~s~-~~--dg~v~vw~~~~~~~~~ 421 (538)
.| ++. |. -++|+.|++.+++...
T Consensus 384 ~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 384 ELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 33 222 22 3678888888876544
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0038 Score=58.16 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=96.0
Q ss_pred EEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc------EEEEEcCCCcEEEEecCCCCeeeeeeeccc
Q 009266 121 IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH------VFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (538)
Q Consensus 121 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (538)
|.++.....++-.|+..++.+....+ +.. |+-+.+.|+... --+.|-.+..|.-||++-...- .+...+.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~ 424 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQS 424 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeec
Confidence 34555667788888888888776333 333 666677775421 1244667788999999843321 1111111
Q ss_pred CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC
Q 009266 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (538)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (538)
. .+.......|++-..+ -+|++|+.+|.||+|+- .++. ..+.+++-..+|..+..+.+|+
T Consensus 425 k---qy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdr-i~~~--------------AKTAlPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 425 K---QYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDR-IGRR--------------AKTALPGLGDAIKHVDVTADGK 484 (644)
T ss_pred c---ccccccccceeeecCC--ceEEEeecCCcEEeehh-hhhh--------------hhhcccccCCceeeEEeeccCc
Confidence 1 1113335667776664 48999999999999997 4331 2334445567899999999999
Q ss_pred EEEEEcCCeEEEeecc
Q 009266 275 LLVSYNDEFIYLFTQD 290 (538)
Q Consensus 275 ~l~~~~~~~i~~~d~~ 290 (538)
+|++.+...+.+.++.
T Consensus 485 wil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 485 WILATCKTYLLLIDTL 500 (644)
T ss_pred EEEEecccEEEEEEEe
Confidence 9999999988887764
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0027 Score=59.12 Aligned_cols=142 Identities=12% Similarity=0.132 Sum_probs=86.7
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC--------CEEEEEcCCeEEEee
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--------ELLVSYNDEFIYLFT 288 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--------~~l~~~~~~~i~~~d 288 (538)
.+|.++.....|+-.|+..++.+....+.. .|+-+.+.|+. +.|+.-++..|.-||
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~----------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFED----------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccC----------------CcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 345556666778888888887654433321 14445555543 245566677899999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccc--ceeeeEEEEecCCCcEEEEeccCCe
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN--CVTVKGVNFFGPKCEYVVSGSDCGR 366 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~v~~~s~~~~~l~~gs~dg~ 366 (538)
.+-... ..+...++|.- .....|.+. ..+ -+||+||.+|.
T Consensus 411 pRv~~~------------------------------------~kl~~~q~kqy~~k~nFsc~aT-T~s-G~IvvgS~~Gd 452 (644)
T KOG2395|consen 411 PRVQGK------------------------------------NKLAVVQSKQYSTKNNFSCFAT-TES-GYIVVGSLKGD 452 (644)
T ss_pred ccccCc------------------------------------ceeeeeeccccccccccceeee-cCC-ceEEEeecCCc
Confidence 873210 01111122211 101344443 334 48999999999
Q ss_pred EEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
||+|+.-..+....|++-..+|..+..+.+|++|+..+.. .+.+-+
T Consensus 453 IRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~ 498 (644)
T KOG2395|consen 453 IRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLID 498 (644)
T ss_pred EEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEE
Confidence 9999974334445677888899999999999987766543 444433
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.52 E-value=0.035 Score=51.43 Aligned_cols=252 Identities=15% Similarity=0.088 Sum_probs=106.3
Q ss_pred CCceEEeec-cCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcC---Cc----CcEEEEEEcCCCCEEEEe-
Q 009266 9 NNKRARTSV-DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HR----GCVNTVSFNTDGDILISG- 79 (538)
Q Consensus 9 ~~~~l~t~~-~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~~~~s~~g~~l~t~- 79 (538)
..++|+..+ ..+.|.|.|+.+.-... ++.+.+.. +. ..-..+-.-|+|++++|+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-----------------~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~l 148 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-----------------RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISAL 148 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS------------------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-----------------ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEec
Confidence 455565555 88999999998533211 11122221 11 122233345788888875
Q ss_pred -----cCCCeEEEEECCCCceeeeeccCC--CCCeEEEEEeecCCCceEEEEeC--------------------CCcEEE
Q 009266 80 -----SDDRRVILWDWKTERVKLSFHSGH--NDNVFQAKIMPFTDDRSIVTCAA--------------------DGQVRH 132 (538)
Q Consensus 80 -----~~d~~i~iw~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~~l~s~~~--------------------dg~v~v 132 (538)
..-|-+.+.|-++.+.+.+..... ...-+.+.|.| ..+.++|... ..++.+
T Consensus 149 Gd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~v 226 (461)
T PF05694_consen 149 GDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHV 226 (461)
T ss_dssp EETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEE
T ss_pred cCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEE
Confidence 223568888888777766653322 23455677777 7777777642 368999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEc--CCCCcEEEEEcCCCcEEEEec-CCCCe--eeeeeecccCCCCCc-------
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIE--PGSPHVFYTCGEDGLVQHFDL-RTGAA--TELFTCRPIDDRRNY------- 200 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~-~~~~~--~~~~~~~~~~~~~~~------- 200 (538)
||+.+.+.++...+......+..|.|. |....-++.+.-.+.|..|-- ..++- .+.+...... ..+.
T Consensus 227 WD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~-v~~~~lp~ml~ 305 (461)
T PF05694_consen 227 WDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK-VEGWILPEMLK 305 (461)
T ss_dssp EETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE---SS---GGGG
T ss_pred EECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc-cCccccccccc
Confidence 999999888876665433445667765 444334454444555555543 33321 1122221110 0000
Q ss_pred ---ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcc---ccCCCCCCCCCcccCCCCcc-CCCccceEEEEEcCCC
Q 009266 201 ---MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK---WDGSTDFGQPADYFCPPNLI-GDEQVGITGLAFSDQS 273 (538)
Q Consensus 201 ---~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~ 273 (538)
..+.-|+.|.+|.++..+.++.-..|.|+.||+.... +..+..++..+......... ..-.+...-+..|.+|
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DG 385 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDG 385 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTS
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCC
Confidence 0123578899999865555666689999999998643 22222222111111000000 0112345667888888
Q ss_pred CEEEEEc
Q 009266 274 ELLVSYN 280 (538)
Q Consensus 274 ~~l~~~~ 280 (538)
+.|...+
T Consensus 386 kRlYvTn 392 (461)
T PF05694_consen 386 KRLYVTN 392 (461)
T ss_dssp SEEEEE-
T ss_pred eEEEEEe
Confidence 8776654
No 385
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.48 E-value=0.073 Score=50.94 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=76.1
Q ss_pred CCcCcEEEEEEcCCC----CEEEEecCCCeEEEEECC-----CCceeeeec----cCCCCCeEEEEEeecCCCceEEEEe
Q 009266 59 KHRGCVNTVSFNTDG----DILISGSDDRRVILWDWK-----TERVKLSFH----SGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g----~~l~t~~~d~~i~iw~~~-----~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
|.-..|..+.|.|-+ ..|++......|.||.+. +++.+..-. ....---..+.|+| ....|++-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEe
Confidence 344679999999953 234444556789999875 222222110 01111123567999 777777776
Q ss_pred CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC
Q 009266 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (538)
....-.++++.......+.-+ ...+.|.|.+|.++|.+++++.+..=.-+|||-...
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 655555666654433332223 356789999999999777777777667889986544
No 386
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.48 E-value=0.089 Score=48.79 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=47.6
Q ss_pred CceeeccccceeeeEEEEec------CCCcEEEEeccCCeEEEeeccCcceeE---E-eecCcceeeEEeecCCCCeEEE
Q 009266 333 PQVYKGHRNCVTVKGVNFFG------PKCEYVVSGSDCGRIFIWKKKGGELIR---V-IEADRHVVNCIEPHPHSTVLAS 402 (538)
Q Consensus 333 ~~~~~~~~~~~~i~~v~~~s------~~~~~l~~gs~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~~~~s~~~~~l~s 402 (538)
...+..|.. +..+.|.. -.|.+|++.-..+.|....+.....+. . +.....++..+++.|+|.++++
T Consensus 246 ~~~~~~~~a---p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~ 322 (331)
T PF07995_consen 246 VFAYPPHSA---PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVS 322 (331)
T ss_dssp SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEE
T ss_pred ceeecCccc---cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEE
Confidence 344454533 56666632 156678777777888888887553332 2 2234448999999999999998
Q ss_pred eecCCceE
Q 009266 403 SGIESDIK 410 (538)
Q Consensus 403 ~~~dg~v~ 410 (538)
...+|.|+
T Consensus 323 ~d~~G~iy 330 (331)
T PF07995_consen 323 DDSDGKIY 330 (331)
T ss_dssp E-TTTTEE
T ss_pred ECCCCeEe
Confidence 88888875
No 387
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00061 Score=64.51 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=75.0
Q ss_pred CCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcE-EEEEcCCCCcEEEEEcCCCcEEEEecCC
Q 009266 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (538)
Q Consensus 104 ~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 182 (538)
...|.-+.|+| .-.++|.+..+|.|.+..+. .+.+.. ++-|...++ +++|.|+| ++|+.|-.||+|++.|+.+
T Consensus 20 ~~~i~~~ewnP--~~dLiA~~t~~gelli~R~n-~qRlwt--ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNP--KMDLIATRTEKGELLIHRLN-WQRLWT--IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcC--ccchhheeccCCcEEEEEec-cceeEe--ccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccC
Confidence 34688899999 88999999999999999887 444444 555666666 99999999 7999999999999999999
Q ss_pred CCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
+..+..+... ....|.++.|.|
T Consensus 94 ~~~l~~~~~s---------~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFS---------VETDISKGIWDR 115 (665)
T ss_pred CCceeccccc---------cccchheeeccc
Confidence 9887663211 223677787875
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.064 Score=46.26 Aligned_cols=213 Identities=12% Similarity=0.121 Sum_probs=111.6
Q ss_pred EEEEcCC-CCEEEEecCCCe-EEEEECCCCceeeeeccCCCC-CeEEEEEeecCCCceEEEEeC-----CCcEEEeeccc
Q 009266 66 TVSFNTD-GDILISGSDDRR-VILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQILE 137 (538)
Q Consensus 66 ~~~~s~~-g~~l~t~~~d~~-i~iw~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~l~s~~~-----dg~v~vwd~~~ 137 (538)
.|+|+|. ..-++.+-.-|+ ..++|....+.+.++...... -.-.=.||| +|.+|+..-. -|.|-|||...
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~--dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP--DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC--CCcEEEeecCCCCCCCceEEEEeccc
Confidence 4778884 345555555444 578888877765554221111 112336899 9999987644 38899999874
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC------------------CCcEEEEecCCCCeeeeeeecccCCCCC
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE------------------DGLVQHFDLRTGAATELFTCRPIDDRRN 199 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (538)
+ ....-.+..|.-....+.+.++|. +++.+.. .-.+.+.+..++..+.+...+..
T Consensus 150 ~-fqrvgE~~t~GiGpHev~lm~DGr-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~----- 222 (366)
T COG3490 150 G-FQRVGEFSTHGIGPHEVTLMADGR-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS----- 222 (366)
T ss_pred c-cceecccccCCcCcceeEEecCCc-EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh-----
Confidence 3 223334667777778899999994 5554421 12334444444444433332211
Q ss_pred cceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCC-CccCCCccceEEEEEcCCCCEEEE
Q 009266 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP-NLIGDEQVGITGLAFSDQSELLVS 278 (538)
Q Consensus 200 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~ 278 (538)
.....+.-++..++ +..++.+-..|.-. |. ..+.....-+.|+..+... .........|-+++.+....+++.
T Consensus 223 -l~~lSiRHld~g~d-gtvwfgcQy~G~~~--d~--ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~l 296 (366)
T COG3490 223 -LRQLSIRHLDIGRD-GTVWFGCQYRGPRN--DL--PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVAL 296 (366)
T ss_pred -hhhcceeeeeeCCC-CcEEEEEEeeCCCc--cC--CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEE
Confidence 12235677777776 33333221111000 00 0000001111121111111 111112356788888877667666
Q ss_pred Ec-CC-eEEEeeccCCC
Q 009266 279 YN-DE-FIYLFTQDMGL 293 (538)
Q Consensus 279 ~~-~~-~i~~~d~~~~~ 293 (538)
.+ .| ...+||..++.
T Consensus 297 TSP~GN~~vi~da~tG~ 313 (366)
T COG3490 297 TSPRGNRAVIWDAATGA 313 (366)
T ss_pred ecCCCCeEEEEEcCCCc
Confidence 66 44 78999998864
No 389
>PHA02713 hypothetical protein; Provisional
Probab=97.42 E-value=0.029 Score=56.10 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=49.9
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC------CcEEEeecccCceeeeeeccccCCCcEEEE
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (538)
.+..|+..+++............-.+++.. ++..++.|+.+ ..+..|+..++.......+....... +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l---~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV---DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE---CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence 467788877653211100111111223332 67777777753 34777888777654332222111222 222
Q ss_pred EcCCCCcEEEEEcCCC-----cEEEEecCCCCe
Q 009266 158 IEPGSPHVFYTCGEDG-----LVQHFDLRTGAA 185 (538)
Q Consensus 158 ~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~ 185 (538)
.. ++ ++.+.||.++ .+..||..+.+-
T Consensus 349 ~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 349 VI-DD-TIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred EE-CC-EEEEECCcCCCCCCceEEEEECCCCeE
Confidence 22 34 6778888754 478899887643
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.38 E-value=0.13 Score=48.46 Aligned_cols=75 Identities=11% Similarity=0.206 Sum_probs=52.8
Q ss_pred eeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcce----eeEEeecCC--------------CC-eEEEeec
Q 009266 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV----VNCIEPHPH--------------ST-VLASSGI 405 (538)
Q Consensus 345 i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~----v~~~~~s~~--------------~~-~l~s~~~ 405 (538)
+.+++. +|.+++.|+...=|+|.++|+.++..++.+++.... +....-... .. +++-+-.
T Consensus 310 ~~~i~~-sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 310 GESICL-SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEEEE-CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 778888 999998888877799999999999999888865431 111111110 11 3455667
Q ss_pred CCceEEecCCCCccc
Q 009266 406 ESDIKILTPNAADRA 420 (538)
Q Consensus 406 dg~v~vw~~~~~~~~ 420 (538)
-|.|-||.++.+.+.
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 899999999877553
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.38 E-value=0.072 Score=46.26 Aligned_cols=186 Identities=12% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCceEEeeccCC--ceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 9 NNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 9 ~~~~l~t~~~d~--~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
++.++-+.+.-| .|+.+++.+|+.+++ ..+.. .--=-.|+... .++..-.-..+...
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~-------------------~~l~~-~~FgEGit~~~-d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETGKVLQS-------------------VPLPP-RYFGEGITILG-DKLYQLTWKEGTGF 113 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTSSEEEE-------------------EE-TT-T--EEEEEEET-TEEEEEESSSSEEE
T ss_pred CCEEEEeCCCCCcEEEEEEECCCCcEEEE-------------------EECCc-cccceeEEEEC-CEEEEEEecCCeEE
Confidence 344445554433 788888888887632 11221 11112233332 23333345678999
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC---CCcEEEEEcCCCC
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIEPGSP 163 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 163 (538)
+||..+.+.+.++. ..+.=+.|+ . ++..|+.+.....+.++|..+.+........... ..++-+.+. +|
T Consensus 114 ~yd~~tl~~~~~~~--y~~EGWGLt--~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G- 185 (264)
T PF05096_consen 114 VYDPNTLKKIGTFP--YPGEGWGLT--S--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG- 185 (264)
T ss_dssp EEETTTTEEEEEEE---SSS--EEE--E--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-
T ss_pred EEccccceEEEEEe--cCCcceEEE--c--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-
Confidence 99999988887773 234556666 3 7888888888889999998876665543333332 345667776 45
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCC-----CCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-----RNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
.+.|=.-....|...|..+|+....+........ ..+....-.+.||+.|..+++++||-
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5666667777899999999998877654332211 01112345899999998777777763
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.35 E-value=0.019 Score=56.65 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=86.7
Q ss_pred EEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
+.+.....+...-..++-+.-|.-++.-++-+....+.|||...+.....-.-.....|..+.|...++++.+++.+..+
T Consensus 17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 44444555555555566666666566555555566899999988875444322457899999998777999999999999
Q ss_pred cEEEeeccc-------C--ceeeeeeccccC-CCcEEEEEcCCCCcEEEEEcCCCcEEEEec
Q 009266 129 QVRHAQILE-------R--GGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (538)
Q Consensus 129 ~v~vwd~~~-------~--~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (538)
.|.++.-.. + ..+....+..|+ .+|....|.++| .+++.++ +.+.|++-
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEEEEeC--CEEEEECC
Confidence 999986421 1 122233344455 689999999999 4444333 46888864
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.35 E-value=0.055 Score=54.02 Aligned_cols=162 Identities=14% Similarity=0.150 Sum_probs=84.7
Q ss_pred CcCcEEEEEEcCCCCEEEEec------CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-CcEEE
Q 009266 60 HRGCVNTVSFNTDGDILISGS------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRH 132 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~------~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-g~v~v 132 (538)
....+...+++|+|+.+|..- .++.-.||-...+.....+..+. ..+.-.|+| +|..|++.... ..+++
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWsp--DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSL--DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECC--CCCceEEEecCcceEEE
Confidence 334688999999999887654 24333444332232223343333 388889999 98888777533 12222
Q ss_pred eecccCceeeeeecc------ccCCCcEEEEEcCCCCcEEEEEcCCCcEEE---EecCCCCeeeeeeecccCCCCCccee
Q 009266 133 AQILERGGVETKLLG------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQH---FDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 133 wd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
..-.....+....+. .....|..+.|+|+|.+++++. ++.|++ -....+. ...-...... .+ ..
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~--~~--l~ 496 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVG--PG--LG 496 (591)
T ss_pred eccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEee--cc--cC
Confidence 221111111110010 2345799999999996555444 367776 4433443 1110000000 00 11
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
..+..+.|.++ +.+ +++..++...+|.+.
T Consensus 497 ~~~~~l~W~~~-~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 497 DTAVSLDWRTG-DSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred CccccceEecC-CEE-EEEecCCCCceEEEe
Confidence 13577899997 454 455555555555544
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.33 E-value=0.072 Score=44.55 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=39.5
Q ss_pred cCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCC
Q 009266 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH 396 (538)
Q Consensus 352 s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 396 (538)
...|++.++.-..++|...|..+|+.+.+++-....|++++|--.
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 567888888888899999999999999999988899999999643
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.32 E-value=0.06 Score=53.77 Aligned_cols=153 Identities=15% Similarity=0.170 Sum_probs=88.6
Q ss_pred CCCCEEEEecCC------CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC------CcEEEeecccC
Q 009266 71 TDGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILER 138 (538)
Q Consensus 71 ~~g~~l~t~~~d------~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d------g~v~vwd~~~~ 138 (538)
..+.+++.||.. ..+..||..++.........+...-.++++. ++...++|+.+ .++..||..++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE---CCEEEEEccccCCCcccceEEEecCCCC
Confidence 346677778776 3688899888754333222333445556665 67888889888 35677888777
Q ss_pred ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCc-----EEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL-----VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
+......+...........+ .| .+.++||.+|. |-.||..+.+....-.-.. .......+.+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--------~r~~~gv~~~-- 426 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--------RRSGHGVAVL-- 426 (571)
T ss_pred ceeccCCccCccccceeEEE--CC-EEEEEeccccccccccEEEecCCCCcccccCCCCc--------ceeeeEEEEE--
Confidence 76553323322222222222 34 68889998864 7778877665432211100 0111222222
Q ss_pred CCCcEEEEEeCCC------eEEEEEcCCccccC
Q 009266 214 RNANLFAVAGSDE------YTRLYDIRKYKWDG 240 (538)
Q Consensus 214 ~~~~~l~~~~~dg------~v~iwd~~~~~~~~ 240 (538)
++.+.++|+.++ +|..||..+.++..
T Consensus 427 -~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 427 -GGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred -CCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 367888888554 57789988877643
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.011 Score=60.00 Aligned_cols=74 Identities=23% Similarity=0.464 Sum_probs=54.4
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeec-CCCceEEEEeCCCcEEEeecc
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTCAADGQVRHAQIL 136 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~~l~s~~~dg~v~vwd~~ 136 (538)
-.++|++++|+.+|++++.|-.+|.|.+||+..++.++.+ ..|..+.+.+-+.-. ..+..++++...|. +|.+.
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 3579999999999999999999999999999988876665 445554444433321 15556888877776 56653
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.0017 Score=53.74 Aligned_cols=105 Identities=15% Similarity=0.271 Sum_probs=61.9
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEE-EEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC-
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQA-KIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ- 150 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l-~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~- 150 (538)
+..|+.|+.+|.|.+|+...-.........-...|-++ .-.. ++.+..+++.+|.|+.|++.-.+.+.. ...|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~--~~~~~c~~~~dg~ir~~n~~p~k~~g~--~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR--DSSLGCVGAQDGRIRACNIKPNKVLGY--VGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceecccccc--ccceeEEeccCCceeeeccccCceeee--eccccC
Confidence 46788899999999998762222111112222233332 2222 556888999999999999987766654 44555
Q ss_pred CCcEEEEEcCCCCcEEEEE--cCCCcEEEEecCC
Q 009266 151 GRAHKLAIEPGSPHVFYTC--GEDGLVQHFDLRT 182 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~ 182 (538)
.++..+..+..+ .+++.+ +.+..++.|++..
T Consensus 146 ~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 344444443333 344444 5556666666543
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.17 Score=44.13 Aligned_cols=145 Identities=12% Similarity=0.130 Sum_probs=87.1
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
..+|...-...+..+.+.+-...+.++.|+|+. +.|++......-.|+=...|+.+..+...... ..-.|
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~---------DpE~I 134 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS---------DPETI 134 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccC---------ChhHe
Confidence 444544333333333355666679999999999 56666666666667766778888777654321 23556
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-CeEEEee
Q 009266 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFT 288 (538)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~i~~~d 288 (538)
.+... ++++++--.++.+.++.+......-... ... .+.......+.....++|.|..+.|..+-. +-+.||.
T Consensus 135 eyig~-n~fvi~dER~~~l~~~~vd~~t~~~~~~----~~~-i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~ 208 (316)
T COG3204 135 EYIGG-NQFVIVDERDRALYLFTVDADTTVISAK----VQK-IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFE 208 (316)
T ss_pred EEecC-CEEEEEehhcceEEEEEEcCCccEEecc----ceE-EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEE
Confidence 67664 5666666678888888776542111100 001 111222223678899999998887777764 4455555
Q ss_pred cc
Q 009266 289 QD 290 (538)
Q Consensus 289 ~~ 290 (538)
+.
T Consensus 209 ~~ 210 (316)
T COG3204 209 VT 210 (316)
T ss_pred Ee
Confidence 44
No 399
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.17 Score=44.04 Aligned_cols=204 Identities=16% Similarity=0.106 Sum_probs=112.1
Q ss_pred eEEcCCc-CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 55 AKLDKHR-GCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 55 ~~~~~h~-~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
..+.+|- +.|..+.....-.++.+|-.---+-+|+..... .+..+ ..-..-+..+.++. ++++.+..+.-++
T Consensus 35 ~~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~-i~~~~l~~Dv~vse----~yvyvad~ssGL~ 109 (370)
T COG5276 35 YAYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSV-INARDLFADVRVSE----EYVYVADWSSGLR 109 (370)
T ss_pred eEEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEE-EehhhhhheeEecc----cEEEEEcCCCceE
Confidence 3455676 556666665444444443222223345443211 11222 12345667777764 7788888888899
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
|.|+.+........+....+.-.++..+ | +++..+..+.-+.++|+.+.+..+....-.. ....-..++.
T Consensus 110 IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdpssP~lagrya~-------~~~d~~~v~I 179 (370)
T COG5276 110 IVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-------PGGDTHDVAI 179 (370)
T ss_pred EEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCCCceeeeeecc-------CCCCceeEEE
Confidence 9999887665432222222344455554 4 5677777666788889887654332211110 1111244555
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCC-C-ccceEEEEEcCCCCEEEEEcCCeEEEeec
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD-E-QVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~s~~~~~l~~~~~~~i~~~d~ 289 (538)
+ |++...+..++-+.|.|+..... +.+..+ . ...+.++..+++--+++....+ +.+-+.
T Consensus 180 S---Gn~AYvA~~d~GL~ivDVSnp~s---------------Pvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~ 240 (370)
T COG5276 180 S---GNYAYVAWRDGGLTIVDVSNPHS---------------PVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDV 240 (370)
T ss_pred e---cCeEEEEEeCCCeEEEEccCCCC---------------CeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEec
Confidence 5 56778888999999999987531 111111 1 1257777777776666655443 444454
Q ss_pred cCC
Q 009266 290 DMG 292 (538)
Q Consensus 290 ~~~ 292 (538)
...
T Consensus 241 s~~ 243 (370)
T COG5276 241 SGP 243 (370)
T ss_pred CCC
Confidence 443
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.07 E-value=0.19 Score=45.31 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=79.9
Q ss_pred cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEec
Q 009266 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (538)
Q Consensus 101 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (538)
..-.+.+..+..++ +|.+++++.....+.-|+.-.....+. -.....+|..|.|.|++ .+.+ ....|.|+.=+.
T Consensus 141 ~~~~gs~~~~~r~~--dG~~vavs~~G~~~~s~~~G~~~w~~~--~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~ 214 (302)
T PF14870_consen 141 SETSGSINDITRSS--DGRYVAVSSRGNFYSSWDPGQTTWQPH--NRNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDD 214 (302)
T ss_dssp -S----EEEEEE-T--TS-EEEEETTSSEEEEE-TT-SS-EEE--E--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-
T ss_pred cCCcceeEeEEECC--CCcEEEEECcccEEEEecCCCccceEE--ccCccceehhceecCCC-CEEE-EeCCcEEEEccC
Confidence 45567888888888 999988888766667787543333332 33356789999999998 4444 447788888762
Q ss_pred CCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC
Q 009266 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (538)
.. ....+..+.... ......+..++|.+. ..+.++| ..|.+ +.....++-= ........-
T Consensus 215 ~~--~~~~w~~~~~~~---~~~~~~~ld~a~~~~-~~~wa~g-g~G~l-~~S~DgGktW------------~~~~~~~~~ 274 (302)
T PF14870_consen 215 PD--DGETWSEPIIPI---KTNGYGILDLAYRPP-NEIWAVG-GSGTL-LVSTDGGKTW------------QKDRVGENV 274 (302)
T ss_dssp TT--EEEEE---B-TT---SS--S-EEEEEESSS-S-EEEEE-STT-E-EEESSTTSS-------------EE-GGGTTS
T ss_pred CC--CccccccccCCc---ccCceeeEEEEecCC-CCEEEEe-CCccE-EEeCCCCccc------------eECccccCC
Confidence 21 111111110000 012235789999986 4555554 44544 3333333210 000111122
Q ss_pred ccceEEEEEcCCCCEEEEEcCCeEEEe
Q 009266 261 QVGITGLAFSDQSELLVSYNDEFIYLF 287 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~~~~i~~~ 287 (538)
...+..+.|.+..+-++.+.+|.|.-|
T Consensus 275 ~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 275 PSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCceEEEEEcCCCceEEECCCcEEEEe
Confidence 456888999888888999999977655
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.06 E-value=0.13 Score=51.54 Aligned_cols=229 Identities=15% Similarity=0.180 Sum_probs=122.0
Q ss_pred CCceEEEEeCC------CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC------CcEEEEecCCCC
Q 009266 117 DDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGA 184 (538)
Q Consensus 117 ~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 184 (538)
.+.+++.|+.. ..+..+|..++.......+. ....-.++++.. + .+.++||.+ .++..||.++.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCc
Confidence 45566777765 46778888887665543343 223344555554 3 688899988 357888988877
Q ss_pred eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCe-----EEEEEcCCccccCCCCCCCCCcccCCCCccCC
Q 009266 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY-----TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (538)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (538)
-... .+....+ . . ..++.. ++.+.|+|+.+|. |-.||..+.++... ...
T Consensus 361 W~~~---a~M~~~R---~--~-~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-------------a~m-- 414 (571)
T KOG4441|consen 361 WTPV---APMNTKR---S--D-FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-------------APM-- 414 (571)
T ss_pred eecc---CCccCcc---c--c-ceeEEE--CCEEEEEeccccccccccEEEecCCCCccccc-------------CCC--
Confidence 4331 1111100 1 1 112222 3789999998864 67788877764322 000
Q ss_pred CccceEEE-EEcCCCCEEEEEc-CC------eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCccc
Q 009266 260 EQVGITGL-AFSDQSELLVSYN-DE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (538)
Q Consensus 260 ~~~~i~~~-~~s~~~~~l~~~~-~~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
.....+. ...-+|++.++|+ ++ .+..||..++....
T Consensus 415 -~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~----------------------------------- 458 (571)
T KOG4441|consen 415 -LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL----------------------------------- 458 (571)
T ss_pred -CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee-----------------------------------
Confidence 1111111 1223566666665 22 37788877643211
Q ss_pred CCceeeccccceeeeEEEEecCCCcEEEEeccCC-----eEEEeeccCcceeE--EeecCcceeeEEeecCCCCeEEEee
Q 009266 332 APQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-----RIFIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSG 404 (538)
Q Consensus 332 ~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~ 404 (538)
+..+..... -..++ .-++.+.+.|+.++ +|..||..+.+-.. .+......+..+.+ .+++.|+|+
T Consensus 459 -~~~M~~~R~---~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG 530 (571)
T KOG4441|consen 459 -IAPMNTRRS---GFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGG 530 (571)
T ss_pred -cCCcccccc---cceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEec
Confidence 111111111 11233 24778888888776 36678876654332 22222222222222 556778888
Q ss_pred cCC-----ceEEecCCCCc
Q 009266 405 IES-----DIKILTPNAAD 418 (538)
Q Consensus 405 ~dg-----~v~vw~~~~~~ 418 (538)
.+| +|..|++.+.+
T Consensus 531 ~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 531 FDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccCccccceeEEcCCCCCc
Confidence 775 46677776654
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.05 E-value=0.0026 Score=38.66 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=30.1
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV 95 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~ 95 (538)
...|.+++|+|...+||.|+.+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4544
No 403
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.04 E-value=0.16 Score=50.77 Aligned_cols=165 Identities=9% Similarity=0.002 Sum_probs=82.6
Q ss_pred CCeEEEEEeecCCCceEEEEe------CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-CcEEE
Q 009266 105 DNVFQAKIMPFTDDRSIVTCA------ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQH 177 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~i 177 (538)
..+...+++| +|+.++... .+..-.||-...+..... .+.+. ..+.-.|+|+|. .|++.... ..+++
T Consensus 350 ~~vsspaiSp--dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~-lt~g~--~~t~PsWspDG~-~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSR--SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ-VLEGH--SLTRPSWSLDAD-AVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECC--CCCEEEEEEeecCCCCCcceEEEEEeCCCccee-eecCC--CCCCceECCCCC-ceEEEecCcceEEE
Confidence 4678899999 999887765 244445554332322222 12222 378889999984 45555432 22333
Q ss_pred EecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEE---EEcCCccccCCCCCCCCCcccCCC
Q 009266 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL---YDIRKYKWDGSTDFGQPADYFCPP 254 (538)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i---wd~~~~~~~~~~~~~~~~~~~~~~ 254 (538)
..-.....+..+......... .....|..+.|+|+ |..|+... .|.|++ -....+.. .+. .+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpD-G~RiA~i~-~g~v~Va~Vvr~~~G~~----~l~------~~~ 489 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRD-GVRAAMII-GGKVYLAVVEQTEDGQY----ALT------NPR 489 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCC-CCEEEEEE-CCEEEEEEEEeCCCCce----eec------ccE
Confidence 332221122211111100000 02336999999999 55555544 467776 33222220 000 111
Q ss_pred CccCCCccceEEEEEcCCCCEEEEEcCCeEEEeec
Q 009266 255 NLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (538)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~ 289 (538)
.+.......+.++.|.+++.+++........+|.+
T Consensus 490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred EeecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence 12222223457899999999765544443334443
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.91 E-value=0.055 Score=54.12 Aligned_cols=150 Identities=9% Similarity=0.136 Sum_probs=79.8
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC------------------
Q 009266 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG------------------ 128 (538)
Q Consensus 72 ~g~~l~t~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg------------------ 128 (538)
+|++.+.||.++ .+..|+..+.+-...-.-.+...-.+++ .- ++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EE--CCEEEEEeCCCccccccccccccccccccc
Confidence 577777887653 4888998776532211001111111222 22 677777777542
Q ss_pred -----cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC------CcEEEEecCC-CCeeeeeeecccCC
Q 009266 129 -----QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRT-GAATELFTCRPIDD 196 (538)
Q Consensus 129 -----~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~ 196 (538)
.|..||..+.+......+....... +++.. ++ ++.+.|+.+ ..+..||..+ .+-......+.
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--- 501 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--- 501 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccC-cEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc---
Confidence 4777888777665432222111111 22222 34 567777754 2467899887 44332211110
Q ss_pred CCCcceeeeeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCccc
Q 009266 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKW 238 (538)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~ 238 (538)
.......+++ ++.+.++|+.+| .+..||..+.++
T Consensus 502 -----~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 502 -----RLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred -----ccccceeEEE---CCEEEEEeeecceeehhhcCcccccc
Confidence 0111222333 368899999888 777888887764
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.88 E-value=0.29 Score=43.38 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=86.5
Q ss_pred cEEEEEEcCCCCEEEEec---CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEee-cccC
Q 009266 63 CVNTVSFNTDGDILISGS---DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ-ILER 138 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~---~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd-~~~~ 138 (538)
.+.+.+++++++.+|... ....++++. .+........+ ..+....|.+ ++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~--~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDP--DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccC--CCCEEEEEcCCCceEEEEecCCC
Confidence 689999999999877655 233455554 44433433233 3788889999 877766666667777774 2333
Q ss_pred ceeeeee-ccccCCCcEEEEEcCCCCcEEEEE--cCCCcEEEEecCCCCee--eeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 139 GGVETKL-LGKHQGRAHKLAIEPGSPHVFYTC--GEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 139 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
....... .......|+.+.++|+|.++.+.. ...+.|.+--+.....- ..+..... .. ......+..+.|.+
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~-~~--~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR-VA--PPLLSDVTDVAWSD 175 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE-ec--ccccCcceeeeecC
Confidence 3222111 111122899999999996555444 23466776655422111 11110000 00 00223688999999
Q ss_pred CCCcEEEEEeCCC
Q 009266 214 RNANLFAVAGSDE 226 (538)
Q Consensus 214 ~~~~~l~~~~~dg 226 (538)
+ ..+++.+...+
T Consensus 176 ~-~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 D-STLVVLGRSAG 187 (253)
T ss_pred C-CEEEEEeCCCC
Confidence 7 55655554433
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.81 E-value=0.33 Score=43.01 Aligned_cols=114 Identities=14% Similarity=0.059 Sum_probs=65.4
Q ss_pred CcEEEEEcCCCCcEEEEEc--CCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEE
Q 009266 152 RAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 229 (538)
.+.+.++++++..+.+... ....|+++. .+....... ....+..-.|+++ +.+.+........+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-----------~g~~l~~PS~d~~-g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-----------TGGSLTRPSWDPD-GWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-----------cCCccccccccCC-CCEEEEEcCCCceE
Confidence 6889999999954444442 333455554 333333322 1115677889998 66666666666666
Q ss_pred EEE-cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc----CCeEEEeeccC
Q 009266 230 LYD-IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDM 291 (538)
Q Consensus 230 iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~~~i~~~d~~~ 291 (538)
++. ...++.. +. ..... .....|+.+.+||+|..++... .+.|++--+..
T Consensus 91 ~~~~~~~g~~~-------~~----~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 91 VVRDSASGTGE-------PV----EVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred EEEecCCCcce-------eE----Eeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 664 2332211 00 00000 0011899999999999887765 45777776654
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.025 Score=58.03 Aligned_cols=151 Identities=15% Similarity=0.057 Sum_probs=95.6
Q ss_pred CCeEEEEEeecCCCceEEEEe--CCCcEEEeecccCceee---eeeccc------cCCCcEEEEEcCCCCcEEEEEcCCC
Q 009266 105 DNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVE---TKLLGK------HQGRAHKLAIEPGSPHVFYTCGEDG 173 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~--~dg~v~vwd~~~~~~~~---~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~dg 173 (538)
-+|..+...+ ++...++.. .+-.|..||+.+-..-. ...+.. ......++.|+|.-+...+.+..|+
T Consensus 101 ~pi~~~v~~~--D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFH--DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred ccceEEEecc--CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence 3555566666 765555443 33478889987532211 111222 2234667889987766678888999
Q ss_pred cEEEEecCCCCe-eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccC
Q 009266 174 LVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (538)
Q Consensus 174 ~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 252 (538)
.|++..+..... ...+. .....++++|+|. |..++.|-..|++.-|-..-... . .+.+
T Consensus 179 sl~V~~~~~~~~~v~s~p-----------~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~leik-~--------~ip~ 237 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFP-----------VTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLEIK-S--------EIPE 237 (1405)
T ss_pred chhhhhhhhhhhhhcccC-----------cccceeeEEeccc-cceeeEecCCCeEEEeeccccee-e--------cccC
Confidence 999887653322 12222 2336899999997 79999999999998887543211 0 0112
Q ss_pred CCCccCCCccceEEEEEcCCCCEEEEEcC
Q 009266 253 PPNLIGDEQVGITGLAFSDQSELLVSYND 281 (538)
Q Consensus 253 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (538)
+.... ...|.+++|.....+|++.+.
T Consensus 238 Pp~~e---~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 238 PPVEE---NYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred CCcCC---CcceeEEEEecceeEEEEecc
Confidence 22221 578999999999888887653
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.76 E-value=0.78 Score=47.03 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=67.1
Q ss_pred ceEEeeccCCceEEeeeccCceeccccchhhccc-ccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRAS-EDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 11 ~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
+.|+.+. ++.+.+|+-....++........... .....++..+.....-.-.|..|.++|+|++||..|..|.+ |-.
T Consensus 34 rNLl~~~-d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~-V~~ 111 (717)
T PF10168_consen 34 RNLLACR-DGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVV-VLE 111 (717)
T ss_pred eeeEEEe-CCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEE-EEE
Confidence 3344444 68999999885554332111111111 11112222222222334579999999999999999887644 333
Q ss_pred CCC----------Cce--eee-e-------ccCCCCCeEEEEEeecC-CCceEEEEeCCCcEEEeec
Q 009266 90 WKT----------ERV--KLS-F-------HSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 90 ~~~----------~~~--~~~-~-------~~~~~~~v~~l~~~~~~-~~~~l~s~~~dg~v~vwd~ 135 (538)
+.. |+. .++ + ...+...|..+.|+|.+ .+.+|+.-..|+++|+|++
T Consensus 112 LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 112 LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 321 111 111 1 12334467777777732 3567777777777777775
No 409
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.072 Score=54.57 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=74.9
Q ss_pred CCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCC
Q 009266 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (538)
-+..++.|+..|.|...++...-+... .-..-.++|++++|+.+| .+++.|-.+|.|.+||+..++..+.+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~-~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a-- 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLH-QNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEHGA-- 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhh-cCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeecCC--
Confidence 456788999999999988875422111 112345789999999999 6889999999999999999998888775543
Q ss_pred CCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
++. .|-.+.+..+ +..++++...|. +|.+.
T Consensus 174 ----p~t-~vi~v~~t~~-nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 174 ----PVT-GVIFVGRTSQ-NSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ----ccc-eEEEEEEeCC-CcEEEEccCCCc--eEEEE
Confidence 123 3334444444 457888888776 56554
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.69 E-value=0.59 Score=44.24 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=56.2
Q ss_pred CcEEEEEEcCCCCEEEEec-----------CCC-eEEEEECCC--Cce--eeeeccCCCCCeEEEEEeecCCCceEEEEe
Q 009266 62 GCVNTVSFNTDGDILISGS-----------DDR-RVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~-----------~d~-~i~iw~~~~--~~~--~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
.....|+|.++|+++++-. ..+ .|.++.-.. |+. ...+ .........|++.+ ++ +++ +.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~--~G-lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAV--GG-VYV-AT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEec--CC-EEE-eC
Confidence 4567899999999877743 223 677776443 332 1223 22334568899988 77 444 44
Q ss_pred CCCcEEEeecccC-----c-eeeeeeccc----cCCCcEEEEEcCCCCcEEEEEc
Q 009266 126 ADGQVRHAQILER-----G-GVETKLLGK----HQGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 126 ~dg~v~vwd~~~~-----~-~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~ 170 (538)
.....++.+.... + .+....+.. +......++|.|+| .+.++.+
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 4433333344221 1 111111222 23457789999999 4555444
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.67 E-value=0.42 Score=44.65 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=31.2
Q ss_pred ceeeEEeecCCCCeEEEee-cCCceEEecCCCCcccccCccc--------eeeeecc----cCc-eeeeccCCCCCcee
Q 009266 386 HVVNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLPTNI--------EQVLIPD----HIR-WFALGDDDDGDYYF 450 (538)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~~~~~~~~~~~~--------~~~~~~~----~~~-~l~s~~~d~~~~~~ 450 (538)
.-|+.+..|.+.++|..++ ..|.||.||+......++.+.. .....+. ..+ .++.-|.||...++
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 4579999999999876554 5899999999876554443320 1111111 233 67777777755554
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.51 Score=46.81 Aligned_cols=237 Identities=8% Similarity=0.083 Sum_probs=116.9
Q ss_pred CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccC
Q 009266 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (538)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 252 (538)
..|+||++. |+.+..+.... ..+-.+.|+.+ ..|++...+|++++|++........ ..+.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~----------~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~------ 123 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKH----------GELIGMGWSDD--EELICVQKDGTVHVYGLLGEFIESN-SVGF------ 123 (829)
T ss_pred eeEEEEecc-ccchHHHHhcC----------CCeeeecccCC--ceEEEEeccceEEEeecchhhhccc-cccc------
Confidence 468888864 55544443221 15788999985 5777788999999999875432111 1111
Q ss_pred CCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCC--CCCCCCCccccccccccCCCCccccCC--------
Q 009266 253 PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP--NPPPSSPVSTRSEASEMGSDHTSAASP-------- 322 (538)
Q Consensus 253 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 322 (538)
......|.-+.|..+|-.+.+.+..-+.+.+....... ..++..... ..+++....+......
T Consensus 124 -----e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~--~~~Wt~~~~~~~~~~ll~v~~~v~ 196 (829)
T KOG2280|consen 124 -----ESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELP--KSCWTVFQPHRQSTILLDVDVAVG 196 (829)
T ss_pred -----ccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCC--CcceeEecCCCcceeEEeechhhh
Confidence 11123455555555665555554444444444432211 111211111 1222222221111100
Q ss_pred --CCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecC-cceeeEEeecCCCCe
Q 009266 323 --STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTV 399 (538)
Q Consensus 323 --~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~ 399 (538)
.............+.... ..+..+.. ||+.++|+-=...|.|.+-.....+.+..+... ..+...++|.-+.
T Consensus 197 ~~~~q~~~~~~q~~~~~~~~--~~~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd-- 271 (829)
T KOG2280|consen 197 LHICQVEESRVQLHALSWPN--SSVVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND-- 271 (829)
T ss_pred hcccceecccccccccCCCC--ceEEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC--
Confidence 000000111111111111 13677777 999999999999999999988877777666521 1233467776544
Q ss_pred EEEeecCCceEEecCCCCcccccCccceeeeecccCc-eeeecc
Q 009266 400 LASSGIESDIKILTPNAADRATLPTNIEQVLIPDHIR-WFALGD 442 (538)
Q Consensus 400 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~ 442 (538)
-++.+....|.+....+....-+..+.. +..+-.+| .|++.+
T Consensus 272 aVvl~~e~~l~lvgp~gd~V~f~yd~t~-~l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 272 AVVLSWEVNLMLVGPPGDSVQFYYDETA-ILSAEVDGVRIITST 314 (829)
T ss_pred ceEEEEeeeEEEEcCCCCccccccCCCc-eeeeccCeeEEeccc
Confidence 2233334444444444433332222322 33333555 555443
No 413
>PRK10115 protease 2; Provisional
Probab=96.62 E-value=1.1 Score=46.34 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=66.9
Q ss_pred CcEEEEEEcCCCCEEEEecC-----CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC------CcE
Q 009266 62 GCVNTVSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQV 130 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d------g~v 130 (538)
-.+..+.|+|+|++|+.+.. ...|++-++.+|..+...+.+- -..++|++ +++.|+.+..+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~--D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWAN--DSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence 45778899999998886532 3468899998887544432221 15699999 88776655432 367
Q ss_pred EEeecccCceeeeeeccccCCCcE-EEEEcCCCCcEEEEEcC--CCcEEEEec
Q 009266 131 RHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCGE--DGLVQHFDL 180 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~--dg~i~iwd~ 180 (538)
..+++.++.......+........ .+..+.++..+++.+.. ++.+.+|+.
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 777887763222222332222232 33334466444433322 356888885
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.61 E-value=0.35 Score=40.65 Aligned_cols=141 Identities=19% Similarity=0.196 Sum_probs=81.8
Q ss_pred CeEEEEEeecCCCceEEEEeC---------CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEE
Q 009266 106 NVFQAKIMPFTDDRSIVTCAA---------DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 176 (538)
..+.-..+| +|++++-.-. .|.++.|-... .+.. +...-..-+.++|..+.+.+.++-+.+-.|.
T Consensus 110 R~NDgkvdP--~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~--i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 110 RLNDGKVDP--DGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVEL--IWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred ccccCccCC--CCceeeeeeccccccccccccEEEEeccCC--Ccee--eehhccCCccccccccCcEEEEEccCceEEe
Confidence 455556788 8888443222 24455554321 1111 2222334467889888766667777788887
Q ss_pred EEe--cCCCCeeee---eeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCccc
Q 009266 177 HFD--LRTGAATEL---FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (538)
Q Consensus 177 iwd--~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 251 (538)
-|| ..++..... +......... + ...-.+++... |++.++.-..++|...|..+++++..+.+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e---~-~~PDGm~ID~e-G~L~Va~~ng~~V~~~dp~tGK~L~eikl------- 251 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFE---S-LEPDGMTIDTE-GNLYVATFNGGTVQKVDPTTGKILLEIKL------- 251 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcC---C-CCCCcceEccC-CcEEEEEecCcEEEEECCCCCcEEEEEEc-------
Confidence 787 666654322 2221111110 0 01123445555 78888888999999999999986544332
Q ss_pred CCCCccCCCccceEEEEEcCC
Q 009266 252 CPPNLIGDEQVGITGLAFSDQ 272 (538)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~ 272 (538)
....|+|++|--.
T Consensus 252 --------Pt~qitsccFgGk 264 (310)
T KOG4499|consen 252 --------PTPQITSCCFGGK 264 (310)
T ss_pred --------CCCceEEEEecCC
Confidence 1457899999653
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.57 E-value=1 Score=46.60 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=116.3
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEc----------------CCC
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN----------------TDG 73 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------~~g 73 (538)
+..|+.++.++.|.-.|..||+.+-+......... . ..| .....+++. ..+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~-~-----------~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~ 260 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEA-G-----------RQH-QTCRGVSYYDAPAAAAGPAAPAAPADCA 260 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccc-c-----------ccc-ccccceEEecCCcccccccccccccccC
Confidence 55688888889999999999987643211100000 0 000 000111111 134
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCCCe-------------EEEEEeecCCCceEEEEeC----------CCcE
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNV-------------FQAKIMPFTDDRSIVTCAA----------DGQV 130 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v-------------~~l~~~~~~~~~~l~s~~~----------dg~v 130 (538)
..|+.++.|+.|.-.|..+|+.+..+- ..+.| ..+.-.|..-+..+++++. .|.|
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 578888889999999999999887652 11111 1111122112345666643 6889
Q ss_pred EEeecccCceeeeeeccc---------------cCCCc-EEEEEcCCCCcEEEEE------------------cCCCcEE
Q 009266 131 RHAQILERGGVETKLLGK---------------HQGRA-HKLAIEPGSPHVFYTC------------------GEDGLVQ 176 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~---------------~~~~v-~~~~~~~~~~~~l~s~------------------~~dg~i~ 176 (538)
+-+|+.+++.+-...... -...+ ..+++.|.. .+++.+ ...+.|.
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999998765432210 00011 223444433 222221 1235677
Q ss_pred EEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC---cEEEEEeCCCeEEEEEcCCccccCC
Q 009266 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
-.|+++++....++........ +-......-+.+...++ ..++.++.+|.+.++|.++++.+..
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD-~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWD-MDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EEeCCCCceEEEecccCCcccc-ccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 8888999888777642211110 00001111122222123 3789999999999999999886544
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.46 E-value=0.0094 Score=36.23 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.9
Q ss_pred cceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 385 RHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
...|..++|+|...+||.+..+|.|.|+.+..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 35699999999999999999999999999844
No 417
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=1.1 Score=44.67 Aligned_cols=107 Identities=12% Similarity=0.030 Sum_probs=62.3
Q ss_pred CcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce
Q 009266 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (538)
Q Consensus 62 ~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 140 (538)
+..-++..+|..- -+. +.-..|+||++. |+.+.++.-.|. .+-.+.|+ +...|++...+|++.++++.....
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~~~w~~~-~lI~mgWs---~~eeLI~v~k~g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGRILWKHG-ELIGMGWS---DDEELICVQKDGTVHVYGLLGEFI 116 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchHHHHhcCC-Ceeeeccc---CCceEEEEeccceEEEeecchhhh
Confidence 4444555555321 111 344579999965 777777644444 78889999 567888889999999999863221
Q ss_pred eee-eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEE
Q 009266 141 VET-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (538)
Q Consensus 141 ~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 178 (538)
... .........|..+.|..+| +++-..+|.+.+.
T Consensus 117 e~~svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i 152 (829)
T KOG2280|consen 117 ESNSVGFESQMSDIVECRFFHNG---VAVLTVSGQVILI 152 (829)
T ss_pred cccccccccccCceeEEEEecCc---eEEEecCCcEEEE
Confidence 110 1112223345555665566 3333444555444
No 418
>PHA03098 kelch-like protein; Provisional
Probab=96.39 E-value=0.33 Score=48.77 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=76.7
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC------CcEEEeecccCce
Q 009266 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGG 140 (538)
Q Consensus 72 ~g~~l~t~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d------g~v~vwd~~~~~~ 140 (538)
++++.+.||.+ ..+..|+..+++....-...+...-.+++. - ++..++.|+.. ..+..||+.+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-V--NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-E--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 56777778765 357788877665322110011111112222 2 66777777732 4578889887665
Q ss_pred eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC--------cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--------LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
.....+....... +++.. ++ .+++.|+... .+.+||+.+.+-...-.... +. . ....+.+
T Consensus 419 ~~~~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~r--~--~~~~~~~- 486 (534)
T PHA03098 419 SKGSPLPISHYGG-CAIYH-DG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF----PR--I--NASLCIF- 486 (534)
T ss_pred eecCCCCccccCc-eEEEE-CC-EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc----cc--c--cceEEEE-
Confidence 4432222111111 22222 34 5677776432 38889988765443211110 00 0 1122222
Q ss_pred CCCCcEEEEEeCC-----CeEEEEEcCCccc
Q 009266 213 PRNANLFAVAGSD-----EYTRLYDIRKYKW 238 (538)
Q Consensus 213 ~~~~~~l~~~~~d-----g~v~iwd~~~~~~ 238 (538)
+ +.+++.|+.. ..|.+||..+.++
T Consensus 487 -~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 487 -N-NKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred -C-CEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 2 5677777654 4688888887664
No 419
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.38 E-value=0.72 Score=41.67 Aligned_cols=276 Identities=12% Similarity=0.088 Sum_probs=120.4
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CCceeeeec-cCC---CCCeEEEEEeecCCCceEEEEeCCCcEEEeec
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWK-TERVKLSFH-SGH---NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~-~~~~~~~~~-~~~---~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~ 135 (538)
...+..|.|.....-+|+|.. +. |+... .|+.=.... ... .-..++|.|. +...+++ +..+. .+...
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~-g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~---~~~g~iv-G~~g~-ll~T~ 87 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAY-GT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD---GNEGWIV-GEPGL-LLHTT 87 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETT-TE--EEEESSTTSS-EE-----S-----EEEEEEEE---TTEEEEE-EETTE-EEEES
T ss_pred CCceEEEEEecCCEEEEEecC-CE--EEEECCCCccccccccCCCccceeeEEEEEec---CCceEEE-cCCce-EEEec
Confidence 458999999966666666654 53 33333 333211110 111 1246677775 3344444 44443 23332
Q ss_pred ccCceeeeeecc-ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 136 LERGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 136 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
..++.-....+. .-......+.....+ ..+++ +..|.| |.... ++.-+.+.. . ....+..+..++
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~i--y~T~DgG~tW~~~~~-~--------~~gs~~~~~r~~ 154 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAI--YRTTDGGKTWQAVVS-E--------TSGSINDITRSS 154 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--E--EEESSTTSSEEEEE--S------------EEEEEE-T
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcE--EEeCCCCCCeeEccc-C--------CcceeEeEEECC
Confidence 323221111111 112233334443333 33333 333443 33333 332222221 1 234688888888
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCC
Q 009266 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~ 293 (538)
+ +.+++++..-..+.-|+--.... ..........|.+|.|.|++.+.+.+..+.|+.=+.....
T Consensus 155 d-G~~vavs~~G~~~~s~~~G~~~w---------------~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 155 D-GRYVAVSSRGNFYSSWDPGQTTW---------------QPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG 218 (302)
T ss_dssp T-S-EEEEETTSSEEEEE-TT-SS----------------EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE
T ss_pred C-CcEEEEECcccEEEEecCCCccc---------------eEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc
Confidence 7 78888876666666777543211 0111113568999999999998887777777776511100
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
. ...............+..++| .+++...|+|+. |.+ +....
T Consensus 219 ~-----------------------------------~w~~~~~~~~~~~~~~ld~a~-~~~~~~wa~gg~-G~l-~~S~D 260 (302)
T PF14870_consen 219 E-----------------------------------TWSEPIIPIKTNGYGILDLAY-RPPNEIWAVGGS-GTL-LVSTD 260 (302)
T ss_dssp E-----------------------------------EE---B-TTSS--S-EEEEEE-SSSS-EEEEEST-T-E-EEESS
T ss_pred c-----------------------------------ccccccCCcccCceeeEEEEe-cCCCCEEEEeCC-ccE-EEeCC
Confidence 0 000000111112223789999 887777777664 433 34445
Q ss_pred CcceeEEeec---CcceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 374 GGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 374 ~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
.|+.-+..+. -...++.+.|.+..+-+|. +.+|.|.-|
T Consensus 261 gGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 261 GGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 5665554432 2345788888766554554 467777655
No 420
>PHA03098 kelch-like protein; Provisional
Probab=96.22 E-value=0.67 Score=46.61 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=76.1
Q ss_pred CCCEEEEecCCC------eEEEEECCCCceeeeec-cCCCCCeEEEEEeecCCCceEEEEeCC-----CcEEEeecccCc
Q 009266 72 DGDILISGSDDR------RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERG 139 (538)
Q Consensus 72 ~g~~l~t~~~d~------~i~iw~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~d-----g~v~vwd~~~~~ 139 (538)
++.+++.||.++ .+..||..+.+....-. ....... +++ .- ++..++.|+.+ ..+..|+..+++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 456667776542 57788877765422110 1111111 222 22 67777788764 357778887766
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC------CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
......+...... .+++.. ++ ++++.||.. ..+..||+.+.+-...-..+. .. .-.+++...
T Consensus 370 W~~~~~lp~~r~~-~~~~~~-~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r-------~~~~~~~~~ 437 (534)
T PHA03098 370 WREEPPLIFPRYN-PCVVNV-NN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI--SH-------YGGCAIYHD 437 (534)
T ss_pred eeeCCCcCcCCcc-ceEEEE-CC-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc--cc-------cCceEEEEC
Confidence 5443222211111 122222 34 577777732 358889988765432211110 00 011222222
Q ss_pred CCCcEEEEEeCC--------CeEEEEEcCCcccc
Q 009266 214 RNANLFAVAGSD--------EYTRLYDIRKYKWD 239 (538)
Q Consensus 214 ~~~~~l~~~~~d--------g~v~iwd~~~~~~~ 239 (538)
+.+++.|+.. ..+.+||..+.++.
T Consensus 438 --~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 438 --GKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred --CEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 4677777643 23888998887654
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.20 E-value=1.2 Score=42.25 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=54.6
Q ss_pred CCeEEEEEeecCCCceEEEEe-----------CCC-cEEEeecccC--ceeeeeeccccCCCcEEEEEcCCCCcEEEEEc
Q 009266 105 DNVFQAKIMPFTDDRSIVTCA-----------ADG-QVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~-----------~dg-~v~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 170 (538)
.....|+|.+ +|+++++-. ..+ .|.++.-..+ +......+.......+.|++.+++ +++ +.
T Consensus 14 ~~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-AT 88 (367)
T ss_pred CCCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eC
Confidence 4566788888 888776643 123 6766654432 222222233334456889999877 444 44
Q ss_pred CCCcEEEEecCCC-----CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 171 EDGLVQHFDLRTG-----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 171 ~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
....+++.+.... +....+....... . .+......++|.|+ +.+.++-+
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~--~-~~~~~~~~l~~gpD-G~LYv~~G 142 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQI--N-NHHHSLNSLAWGPD-GWLYFNHG 142 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCC--C-cccccccCceECCC-CCEEEecc
Confidence 4433334344321 1111221111100 0 01124678999998 55555433
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.13 Score=53.19 Aligned_cols=215 Identities=12% Similarity=0.042 Sum_probs=117.5
Q ss_pred CcEEEEEEcCCCCEEEEe--cCCCeEEEEECCCCceee----eecc------CCCCCeEEEEEeecCCCceEEEEeCCCc
Q 009266 62 GCVNTVSFNTDGDILISG--SDDRRVILWDWKTERVKL----SFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~--~~d~~i~iw~~~~~~~~~----~~~~------~~~~~v~~l~~~~~~~~~~l~s~~~dg~ 129 (538)
-+|..+...+++...++. +.+-.|..||+.+-..-. ..+. ....-..++.|+|. -....+.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccc
Confidence 456677777887655443 333478888986532211 1111 12234567889883 2345667778899
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
|++..+........ -......+++++|+|.| +.++.|-..|++.-|-.. .+....+.+.+.. ....|.+|
T Consensus 180 l~V~~~~~~~~~v~--s~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~------e~yrvl~v 249 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVT--SFPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE------ENYRVLSV 249 (1405)
T ss_pred hhhhhhhhhhhhhc--ccCcccceeeEEecccc-ceeeEecCCCeEEEeecc-cceeecccCCCcC------CCcceeEE
Confidence 99888754333222 12355678999999999 678999999999988654 3444444443332 23579999
Q ss_pred EEcCCCCcEEEEEeCCCe-----EEEEEcC--CccccCCCCCCCCCcccCCC--CccCCCccceEEEEEcCCCC-EEEEE
Q 009266 210 AIDPRNANLFAVAGSDEY-----TRLYDIR--KYKWDGSTDFGQPADYFCPP--NLIGDEQVGITGLAFSDQSE-LLVSY 279 (538)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~-----v~iwd~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~-~l~~~ 279 (538)
+|-.. +-+++....++ =..|+.+ ..+......|..+....++. ....+|...++-..|.++.+ +++++
T Consensus 250 ~Wl~t--~eflvvy~n~ts~~~dpd~y~~~~~k~kp~g~~nF~E~~d~tppfg~~~rq~h~y~~~L~~W~~~~~~vVvva 327 (1405)
T KOG3630|consen 250 TWLST--QEFLVVYGNVTSETDDPDSYDQKMYKIKPDGSANFQETFDITPPFGQIVRQPHMYKVTLSGWIEPDANVVVVA 327 (1405)
T ss_pred EEecc--eeEEEEecccccCcCCchhhhhccccccCcceeeeccccCCCCCccccCccchhHHHhhhhhcccccceEEEe
Confidence 99864 33333222221 0111111 11123333444443333332 22334444555567776544 44444
Q ss_pred cC--CeEEEeec
Q 009266 280 ND--EFIYLFTQ 289 (538)
Q Consensus 280 ~~--~~i~~~d~ 289 (538)
+. -.|-+|..
T Consensus 328 nsaSsEvsila~ 339 (1405)
T KOG3630|consen 328 NSASSEVSILAS 339 (1405)
T ss_pred cccccchhhhhh
Confidence 32 24666665
No 423
>PRK10115 protease 2; Provisional
Probab=96.14 E-value=2 Score=44.41 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=46.7
Q ss_pred CeEEEEEeecCCCceEEEEeC-----CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----CcE
Q 009266 106 NVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLV 175 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i 175 (538)
.+..+.|+| ++++|+.+.. ...|++.++.++..+.. .+.. . -..++|.+++..++++...+ ..|
T Consensus 128 ~l~~~~~Sp--dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITP--DNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-LLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECC--CCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-cccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 466788999 9998886543 24588888887753322 1221 1 14699999986555554422 367
Q ss_pred EEEecCCC
Q 009266 176 QHFDLRTG 183 (538)
Q Consensus 176 ~iwd~~~~ 183 (538)
+.+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 88888877
No 424
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.12 E-value=0.69 Score=41.78 Aligned_cols=199 Identities=16% Similarity=0.163 Sum_probs=99.5
Q ss_pred cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC-----cEEEEEeCCCeEEEEEcCCccccCCCC---CC
Q 009266 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA-----NLFAVAGSDEYTRLYDIRKYKWDGSTD---FG 245 (538)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~ 245 (538)
.|.+||+.+.+.++.+..+..... ..+.+..+.+....+ ...++=...+.|.+||+.+++.-+... ..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~----~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~ 110 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP----PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSP 110 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-----TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTT
T ss_pred EEEEEECCCCcEEEEEECChHHcc----cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcce
Confidence 578899999998888876654332 234577787776322 234444455789999999876422211 00
Q ss_pred CCC-cccCCCCccCCCccceEEEEEcC---CCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 246 QPA-DYFCPPNLIGDEQVGITGLAFSD---QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 246 ~~~-~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
.|. ..+............+.+++.+| ++++|.-..-...++|.+.+......-.
T Consensus 111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~---------------------- 168 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSL---------------------- 168 (287)
T ss_dssp S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT-----------------------
T ss_pred eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccc----------------------
Confidence 110 00000000011123477777766 6777776654434444444321111100
Q ss_pred CCCCCCC-cccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc---ceeEEee-cC--cceeeEEeec
Q 009266 322 PSTANTD-VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---ELIRVIE-AD--RHVVNCIEPH 394 (538)
Q Consensus 322 ~~~~~~~-~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~---~~~~~~~-~h--~~~v~~~~~s 394 (538)
.... .....+.+ +.+.. ....+++ +++|.++++--..+.|..|+..+. +.+..+. .. -..+..+++.
T Consensus 169 ---~~~~~~~~~v~~l-G~k~~-~s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~ 242 (287)
T PF03022_consen 169 ---SDAQALASQVQDL-GDKGS-QSDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID 242 (287)
T ss_dssp ----HHH-HHHT-EEE-EE----SECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred ---cccccccccceec-cccCC-CCceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence 0000 01112222 22211 2456676 899999999999999999998652 1222222 11 2467888998
Q ss_pred C--CCCeEEEee
Q 009266 395 P--HSTVLASSG 404 (538)
Q Consensus 395 ~--~~~~l~s~~ 404 (538)
+ ++.+.+.+.
T Consensus 243 ~~~~g~L~v~sn 254 (287)
T PF03022_consen 243 PEGDGYLWVLSN 254 (287)
T ss_dssp T--TS-EEEEE-
T ss_pred cccCceEEEEEC
Confidence 8 777655553
No 425
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.09 E-value=0.83 Score=39.57 Aligned_cols=241 Identities=15% Similarity=0.135 Sum_probs=142.1
Q ss_pred CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 184 (538)
..-+.|+-.| +|..-+++...+.|--.|..+++.... --+.......|..-|++... ++-+.. .|.-.+.++..
T Consensus 62 ~ap~dvapap--dG~VWft~qg~gaiGhLdP~tGev~~y--pLg~Ga~Phgiv~gpdg~~W-itd~~~-aI~R~dpkt~e 135 (353)
T COG4257 62 SAPFDVAPAP--DGAVWFTAQGTGAIGHLDPATGEVETY--PLGSGASPHGIVVGPDGSAW-ITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCccccccCC--CCceEEecCccccceecCCCCCceEEE--ecCCCCCCceEEECCCCCee-EecCcc-eeEEecCcccc
Confidence 3445667777 888888888888888888888876543 22344556778889998543 333222 56666665554
Q ss_pred eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC---------CeEEEEEcCCccccCCCCCCCCCcccCCCC
Q 009266 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---------EYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (538)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
.. .+..... .....+....|.+. |++-+++... +.|++|....+
T Consensus 136 vt-~f~lp~~------~a~~nlet~vfD~~-G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------- 188 (353)
T COG4257 136 VT-RFPLPLE------HADANLETAVFDPW-GNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------- 188 (353)
T ss_pred eE-Eeecccc------cCCCcccceeeCCC-ccEEEeeccccceecCcccCceeeeccCCC-------------------
Confidence 33 2322211 13346788999997 6777776521 33455554432
Q ss_pred ccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCc
Q 009266 256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (538)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
.....|+..|+|...++.- .+.|-..|...+..... + ...
T Consensus 189 ------~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~-p--------------------------------~P~ 229 (353)
T COG4257 189 ------GGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVV-P--------------------------------QPN 229 (353)
T ss_pred ------CCCcceEECCCCcEEEEeccccceEEcccccCCccee-c--------------------------------CCC
Confidence 3457789999998766654 55777777655421100 0 000
Q ss_pred eeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCccee-EEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 335 ~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
.+ +.. ...+-- +|.|+.-++-...+.++.||-....-. ..|.+.+....++.....++.-.+--.-|.|.-+|
T Consensus 230 ~~--~~g---sRriws-dpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 230 AL--KAG---SRRIWS-DPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred cc--ccc---cccccc-CccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecC
Confidence 00 111 122222 778887787777788888886554321 23334444556677766666555555556777777
Q ss_pred CCCCcccccC
Q 009266 414 PNAADRATLP 423 (538)
Q Consensus 414 ~~~~~~~~~~ 423 (538)
..+.+...++
T Consensus 304 peta~ftv~p 313 (353)
T COG4257 304 PETARFTVLP 313 (353)
T ss_pred cccceEEEec
Confidence 7766554443
No 426
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.91 E-value=0.69 Score=46.58 Aligned_cols=152 Identities=11% Similarity=0.075 Sum_probs=93.1
Q ss_pred CCEEEEecCCCeEEEEECCCCceee------eec---------------cCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 73 GDILISGSDDRRVILWDWKTERVKL------SFH---------------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~------~~~---------------~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
..+|+++. .+.|.||++..-.... .+. ......|+.|...-+.+...|+.|..+|.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56777765 5789999875322111 110 0012246666666555778999999999999
Q ss_pred Eeeccc-------C----ce------eeeeeccccCCCcEEEEEc--CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeec
Q 009266 132 HAQILE-------R----GG------VETKLLGKHQGRAHKLAIE--PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (538)
Q Consensus 132 vwd~~~-------~----~~------~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 192 (538)
+|.+.+ . .. +...........++.++++ ... ++||+++....|.||-+..........
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTVFaf~l~~~r~~~~-- 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTVFAFALVDERFYHV-- 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEEEEEeccccccccc--
Confidence 997632 0 00 0001111234578889998 655 688888888888888665431111100
Q ss_pred ccCCCCCcceeeeeEEEEEcCCC----C-cEEEEEeCCCeEEEEEc
Q 009266 193 PIDDRRNYMTVVNLNAIAIDPRN----A-NLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~----~-~~l~~~~~dg~v~iwd~ 233 (538)
+.+.+...|.+|+|-++. | ..|++++-.|.+.+|++
T Consensus 205 -----~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 -----PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -----cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 011244478999998763 2 27888999999999888
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.88 E-value=1.2 Score=39.51 Aligned_cols=243 Identities=11% Similarity=0.070 Sum_probs=124.3
Q ss_pred CCeEEEEEeecCCCceEEEEeCCCcEEEeecc------cCceeeeeeccc-----cCCCcEEEEEcCCC-----------
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL------ERGGVETKLLGK-----HQGRAHKLAIEPGS----------- 162 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~------~~~~~~~~~~~~-----~~~~v~~~~~~~~~----------- 162 (538)
..-+.|+++| .+.+-++....+...+|+.. ....+. ..+.. .....+.+.|+...
T Consensus 23 ~N~WGia~~p--~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~-vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 23 RNAWGLSYRP--GGPFWVANTGTGTATLYVGNPDTQPLVQDPLV-VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cccceeEecC--CCCEEEecCCcceEEeecCCcccccCCccceE-EEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 3567899999 88888888888999999986 121111 12221 22457777777432
Q ss_pred CcEEEEEcCCCcEEEEecCCCCe---eeeeeecccCCCCCcceeeeeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCCcc
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
+..++.++.+|+|.-|...-... ...+..... . ...-.+.+++.+. +..+.++--..++|.+||-.-.+
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s--~----~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~ 173 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS--Q----QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP 173 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccC--C----CcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence 12367788999999998543322 111111100 0 1112344555432 23455555578999999876543
Q ss_pred ccCCCCCCCC--CcccCCCCccC-CCccceEEEEEcCCCCE-EEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccC
Q 009266 238 WDGSTDFGQP--ADYFCPPNLIG-DEQVGITGLAFSDQSEL-LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (538)
Q Consensus 238 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~i~~~~~s~~~~~-l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (538)
+...-.+..| ...+.|..+.. ...-.|+-..-.++++. ++..+-+.|-+|++..
T Consensus 174 ~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---------------------- 231 (336)
T TIGR03118 174 PPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---------------------- 231 (336)
T ss_pred ccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----------------------
Confidence 3211111111 00000100000 00111122222222211 1122234677777653
Q ss_pred CCCccccCCCCCCCCcccCCceeeccccceeeeEEEE-----ecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcc--
Q 009266 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-----FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH-- 386 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~-----~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~-- 386 (538)
..++++.....-..-+.|+. -...|.+|+---.||+|.+||..+++.+..+....+
T Consensus 232 -----------------~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p 294 (336)
T TIGR03118 232 -----------------QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP 294 (336)
T ss_pred -----------------cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence 23333321111111233333 134677888777799999999999998888765432
Q ss_pred ----eeeEEeecC
Q 009266 387 ----VVNCIEPHP 395 (538)
Q Consensus 387 ----~v~~~~~s~ 395 (538)
.++.|+|..
T Consensus 295 i~i~GLWgL~fGn 307 (336)
T TIGR03118 295 VKVDGLWSLTFGN 307 (336)
T ss_pred EEecCeEEeeeCC
Confidence 357777765
No 428
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.87 E-value=0.35 Score=48.56 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=78.1
Q ss_pred CcEEEEEEcC--CCCEEEEecCCCeEEEEECCC-------C----c-------eeeeeccCCCCCeEEEEEe--ecCCCc
Q 009266 62 GCVNTVSFNT--DGDILISGSDDRRVILWDWKT-------E----R-------VKLSFHSGHNDNVFQAKIM--PFTDDR 119 (538)
Q Consensus 62 ~~v~~~~~s~--~g~~l~t~~~d~~i~iw~~~~-------~----~-------~~~~~~~~~~~~v~~l~~~--~~~~~~ 119 (538)
..|+.|.... ...+|+.|..||.|.+|.+++ . . ....+...-...++.|+++ . ..+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~--~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK--KSR 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC--cce
Confidence 3466665544 457899999999999997621 0 0 0011112234578999998 6 778
Q ss_pred eEEEEeCCCcEEEeecccCce-eeeeeccccCCCcEEEEEcCCC--Cc---EEEEEcCCCcEEEEec
Q 009266 120 SIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGS--PH---VFYTCGEDGLVQHFDL 180 (538)
Q Consensus 120 ~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~---~l~s~~~dg~i~iwd~ 180 (538)
+||+++....|.||-+..... .....-..|...|-+|+|.++. +. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888889999987765211 1111122366789999998754 22 6788899999999887
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=95.80 E-value=1.4 Score=43.39 Aligned_cols=146 Identities=10% Similarity=-0.058 Sum_probs=73.6
Q ss_pred CCCEEEEecCC--CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC---cEEEeecccCceeeeeec
Q 009266 72 DGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKLL 146 (538)
Q Consensus 72 ~g~~l~t~~~d--~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~ 146 (538)
+|.+.+.||.+ ..+..|+..+++....-.-.+...-.+++. - ++...+.|+.++ .+..|+..+........+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-I--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-E--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 57777777753 357788876554321110011111112222 2 677778877543 477888877766543222
Q ss_pred cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC-
Q 009266 147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD- 225 (538)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 225 (538)
....... +++ .-++ ++.+.|+ .+.+||..+.+-...-.... ..... +++.. ++++.++|+.+
T Consensus 395 ~~~r~~~-~~~-~~~~-~IYv~GG---~~e~ydp~~~~W~~~~~m~~--------~r~~~-~~~v~--~~~IYviGG~~~ 457 (480)
T PHA02790 395 YYPHYKS-CAL-VFGR-RLFLVGR---NAEFYCESSNTWTLIDDPIY--------PRDNP-ELIIV--DNKLLLIGGFYR 457 (480)
T ss_pred CCccccc-eEE-EECC-EEEEECC---ceEEecCCCCcEeEcCCCCC--------Ccccc-EEEEE--CCEEEEECCcCC
Confidence 2222222 222 2234 5656663 57889987765432211110 00112 22232 25788888754
Q ss_pred ----CeEEEEEcCCcc
Q 009266 226 ----EYTRLYDIRKYK 237 (538)
Q Consensus 226 ----g~v~iwd~~~~~ 237 (538)
..|..||..+.+
T Consensus 458 ~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 458 GSYIDTIEVYNNRTYS 473 (480)
T ss_pred CcccceEEEEECCCCe
Confidence 356777777654
No 430
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.74 E-value=3.1 Score=43.30 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=71.7
Q ss_pred CCceEEEEeCCCcEEEeecccCceeeeeeccccCC------CcEEEEEcCC---------------CCcEEEEEcCCCcE
Q 009266 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG------RAHKLAIEPG---------------SPHVFYTCGEDGLV 175 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~------~v~~~~~~~~---------------~~~~l~s~~~dg~i 175 (538)
-+..|+.++.++.|.-.|..+++.+-......... ..+.+++... ....++.++.|+.|
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 45677788888889989988888766533322111 1222333211 11367888899999
Q ss_pred EEEecCCCCeeeeeeecccCCCC-Ccc-eeeeeEEEEEcCC-CCcEEEEEeC----------CCeEEEEEcCCccccCCC
Q 009266 176 QHFDLRTGAATELFTCRPIDDRR-NYM-TVVNLNAIAIDPR-NANLFAVAGS----------DEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~-~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~ 242 (538)
.-.|.++++....+......... +.. .......+.-.|- -+..+++|+. .|.|+-+|.+++++.-..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999999988765421100000 000 0000000111110 0135555542 688999999999877655
Q ss_pred CCC
Q 009266 243 DFG 245 (538)
Q Consensus 243 ~~~ 245 (538)
..+
T Consensus 353 ~~g 355 (764)
T TIGR03074 353 DPG 355 (764)
T ss_pred ecC
Confidence 443
No 431
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=95.66 E-value=2.9 Score=43.78 Aligned_cols=66 Identities=12% Similarity=-0.034 Sum_probs=49.5
Q ss_pred eeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEe----ec---------------CcceeeEEeecCCCCeEEEee
Q 009266 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI----EA---------------DRHVVNCIEPHPHSTVLASSG 404 (538)
Q Consensus 344 ~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~----~~---------------h~~~v~~~~~s~~~~~l~s~~ 404 (538)
.|.++.. ..-+.+|+..-.||+|.++|..+.+.+... .. +-..+..++|||.+..++.-.
T Consensus 261 ~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 261 RVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred eEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 3777776 666779999999999999998887655433 10 011344588999999999999
Q ss_pred cCCceE
Q 009266 405 IESDIK 410 (538)
Q Consensus 405 ~dg~v~ 410 (538)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999865
No 432
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.58 E-value=3.7 Score=43.18 Aligned_cols=87 Identities=14% Similarity=0.192 Sum_probs=56.8
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCc--cCCCccceEEEEEcCCCCEEEEEcC
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL--IGDEQVGITGLAFSDQSELLVSYND 281 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (538)
.+...++|+|.....||+....|...||++............ .....+ ..+ -.........+.|.++-..|+.++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-eccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 356789999987789999999999999999322211110000 000000 001 0111245568899999889999999
Q ss_pred CeEEEeeccCC
Q 009266 282 EFIYLFTQDMG 292 (538)
Q Consensus 282 ~~i~~~d~~~~ 292 (538)
.++.++++.+.
T Consensus 224 ~~l~~~d~~~~ 234 (765)
T PF10214_consen 224 SKLMLIDFESN 234 (765)
T ss_pred CceEEEECCCC
Confidence 99999999874
No 433
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.50 E-value=0.081 Score=48.78 Aligned_cols=257 Identities=15% Similarity=0.104 Sum_probs=131.8
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceecc---ccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTR---NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
-+|..+..+.|..+|.+.+...+-...... .|.+ ....+.+....++..|...-..++...+ +.+++.+..
T Consensus 123 ~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~-----g~~p~aLd~qgr~leh~~~~lalA~~~~-~qf~~~~~t 196 (733)
T COG4590 123 TPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPP-----GLEPLALDEQGRLLEHPLQQLALALTAE-AQFATYDNT 196 (733)
T ss_pred CCCCCceEEEeccCCeEEEEeccccccCCCCCccCCC-----CCCccccCcccCcccchHHHhhhccchh-hHHHHhhhh
Confidence 457788899999999999887652221110 0100 0000111111112222211111222111 233333333
Q ss_pred CeEEEEEC--CCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC----CcE-E
Q 009266 83 RRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG----RAH-K 155 (538)
Q Consensus 83 ~~i~iw~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~----~v~-~ 155 (538)
..+++-.. .+.+.+.+++......|..+-..| +|+.|+.-+. .++.++.+.+......+......+ .|+ .
T Consensus 197 ~~~~~L~g~~t~q~e~i~~L~~~~~~v~qllL~P--dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~ 273 (733)
T COG4590 197 QQIQILRGDRTTQQEIIRLLSVPFSDVSQLLLTP--DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQ 273 (733)
T ss_pred hhhhhhhcccCchhhhhhhcCCCccchHhhEECC--CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHH
Confidence 33333321 222233333455667888899999 9999888776 688888887554322211211111 122 1
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEE-ecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHF-DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
+.....+ .-|+++..||.|.-| |++.... ..+........ ...++..+.-.. +.+-+++-...|++.++...
T Consensus 274 l~lL~Gg-~SLLv~~~dG~vsQWFdvr~~~~-p~l~h~R~f~l----~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st 346 (733)
T COG4590 274 LYLLSGG-FSLLVVHEDGLVSQWFDVRRDGQ-PHLNHIRNFKL----APAEVQFLLPET-NRKGFYSLYRNGTLQSFYST 346 (733)
T ss_pred HHHHhCc-eeEEEEcCCCceeeeeeeecCCC-Ccceeeecccc----Ccccceeecccc-ccceEEEEcCCCceeeeecc
Confidence 2222333 457778888888777 5443322 11111100000 112233332222 24567777888888877765
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCC
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~ 294 (538)
..+.. +....-..+.-+++||.+.+|++-..++|+++.+.+..+
T Consensus 347 ~~~~l----------------L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 347 SEKLL----------------LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cCcce----------------ehhhhhcCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence 44321 111112356678999999999999999999999887654
No 434
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.44 E-value=1.6 Score=37.94 Aligned_cols=200 Identities=14% Similarity=0.119 Sum_probs=118.8
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 231 (538)
....++-.|+| ..-+++...+.|--.|.++++....--. ....-..|..-|+++..|.-++ . .|.-+
T Consensus 63 ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg----------~Ga~Phgiv~gpdg~~Witd~~-~-aI~R~ 129 (353)
T COG4257 63 APFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLG----------SGASPHGIVVGPDGSAWITDTG-L-AIGRL 129 (353)
T ss_pred CccccccCCCC-ceEEecCccccceecCCCCCceEEEecC----------CCCCCceEEECCCCCeeEecCc-c-eeEEe
Confidence 44567888998 5778888888898999999876543322 1123456777887444433222 2 45555
Q ss_pred EcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccc
Q 009266 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (538)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (538)
+-++..... +.+ ...+.........|.+.|.+..++..|.---.|..
T Consensus 130 dpkt~evt~----------f~l--p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa--------------------- 176 (353)
T COG4257 130 DPKTLEVTR----------FPL--PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPA--------------------- 176 (353)
T ss_pred cCcccceEE----------eec--ccccCCCcccceeeCCCccEEEeeccccceecCcc---------------------
Confidence 555543211 111 12334567888999999998888775421111211
Q ss_pred cCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee---cCccee
Q 009266 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVV 388 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~---~h~~~v 388 (538)
...+..+....+. .-..+|. .|+|..-++.-....|-..|..++.. ..+. .....-
T Consensus 177 ------------------~~~i~vfpaPqG~-gpyGi~a-tpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gs 235 (353)
T COG4257 177 ------------------RNVISVFPAPQGG-GPYGICA-TPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGS 235 (353)
T ss_pred ------------------cCceeeeccCCCC-CCcceEE-CCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccc
Confidence 1222333332222 2456676 89998777766666777777666522 2222 212234
Q ss_pred eEEeecCCCCeEEEeecCCceEEecCCCCc
Q 009266 389 NCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 389 ~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 418 (538)
+.+--+|.++.-+|....+.+..++.....
T Consensus 236 Rriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 236 RRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cccccCccCcEEEeccCCceeeEeCccccc
Confidence 555667888888888778888888877653
No 435
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.42 E-value=0.69 Score=46.09 Aligned_cols=126 Identities=10% Similarity=0.108 Sum_probs=71.6
Q ss_pred CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc--CCCCcEEEEEeCCCeE
Q 009266 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID--PRNANLFAVAGSDEYT 228 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~v 228 (538)
..+.-+.-+.-+ +..++-+....+.|||.+.+......... ....|..+.|. |+ ++.+++.+-.+.|
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~---------~~~~I~dLDWtst~d-~qsiLaVGf~~~v 98 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFS---------EDDPIRDLDWTSTPD-GQSILAVGFPHHV 98 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeec---------CCCceeeceeeecCC-CCEEEEEEcCcEE
Confidence 344555555545 44444444567999999987743332221 23468888775 55 5677777788888
Q ss_pred EEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccC
Q 009266 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (538)
.+|.-...........-.++... .+......+|....|.++|.++ +++++.+.|++-.-
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i---~i~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKI---DISSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDKWL 157 (631)
T ss_pred EEEEccchhhhcCCcccceeEEE---EeecCCCCCccceeEecCCeEE-EEeCCEEEEECCCc
Confidence 88865432211110000111111 1122233578899999999654 45566788887543
No 436
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.28 E-value=0.11 Score=30.52 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=26.8
Q ss_pred CcEEEEEEcCC-C--CEEEEecCCCeEEEEECCCC
Q 009266 62 GCVNTVSFNTD-G--DILISGSDDRRVILWDWKTE 93 (538)
Q Consensus 62 ~~v~~~~~s~~-g--~~l~t~~~d~~i~iw~~~~~ 93 (538)
++|.+|.|||. + .+|+.+-.-+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999984 4 58888888899999999864
No 437
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.016 Score=59.46 Aligned_cols=10 Identities=10% Similarity=0.042 Sum_probs=3.9
Q ss_pred EEeeeccCce
Q 009266 23 DVWLRELGQL 32 (538)
Q Consensus 23 ~iwd~~~g~~ 32 (538)
+++++.+|+.
T Consensus 807 ~~~~~anGKa 816 (3015)
T KOG0943|consen 807 CIFDLANGKA 816 (3015)
T ss_pred EEEEccCCch
Confidence 3333333333
No 438
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.24 E-value=0.48 Score=47.59 Aligned_cols=151 Identities=10% Similarity=0.070 Sum_probs=91.0
Q ss_pred CceEEEEeCCCcEEEeecccC--ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccC
Q 009266 118 DRSIVTCAADGQVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (538)
Q Consensus 118 ~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (538)
...+..++..+.+.++.-... +.............+.++.+++.. +..|.-+|++-.|--.-... .... .
T Consensus 547 ~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S---lgagl~dgt~a~y~rap~gS---wd~e--p 618 (925)
T KOG3522|consen 547 HPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS---LGAGLIDGTLAVYGRAPSGS---WDGE--P 618 (925)
T ss_pred CCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc---cccCccCCccccccCCCCCC---CCCC--C
Confidence 346777888888888875522 122222223334567777777744 56677777776653221111 0000 0
Q ss_pred CCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCE
Q 009266 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (538)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 275 (538)
...-+....+|.+.++..+ ++.++.+|.|.++...+....+. ......+...|+++....+|-+
T Consensus 619 ~~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~------------leahqee~~~Vthm~~~~~gVw 682 (925)
T KOG3522|consen 619 NISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWD------------LEAHQEEAHSVTHMLYLDNGVW 682 (925)
T ss_pred ccccccCCccccchhhhhc----eeeeecCCceEEEechhccccch------------hHHHHhhcceEEEEEeeCCceE
Confidence 0011124457888888764 55677889999999877542211 1122234568999999999988
Q ss_pred EEEEcCCeEEEeeccCC
Q 009266 276 LVSYNDEFIYLFTQDMG 292 (538)
Q Consensus 276 l~~~~~~~i~~~d~~~~ 292 (538)
++.++...++++...+-
T Consensus 683 vafasG~~~rlfhtetl 699 (925)
T KOG3522|consen 683 VAFASGDEERLFHTETL 699 (925)
T ss_pred EEEcCCCEEEEeccccc
Confidence 88888888888876653
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=95.20 E-value=2.1 Score=42.20 Aligned_cols=148 Identities=10% Similarity=-0.007 Sum_probs=74.1
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC--CcEEEeecccCceeeee
Q 009266 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--GQVRHAQILERGGVETK 144 (538)
Q Consensus 72 ~g~~l~t~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d--g~v~vwd~~~~~~~~~~ 144 (538)
.+.+++.||.++ .+..|+..+++....-.......-.+++ .- ++...+.|+.+ ..+..|+..+++.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE--CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 355667777542 5677887766532211001111112222 23 77777888753 45778887766554433
Q ss_pred eccccCCCcEEEEEcCCCCcEEEEEcCCC---cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
.+.........+++ ++ ++.+.||.++ .+..||.++.+-...-.. . . .......+++ ++.+.+.
T Consensus 348 ~l~~~r~~~~~~~~--~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m--~--~----~r~~~~~~~~---~~~IYv~ 413 (480)
T PHA02790 348 SLLKPRCNPAVASI--NN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPST--Y--Y----PHYKSCALVF---GRRLFLV 413 (480)
T ss_pred CCCCCCcccEEEEE--CC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCC--C--C----ccccceEEEE---CCEEEEE
Confidence 33322222222222 34 6777777653 477888876643321110 0 0 0001112222 2566676
Q ss_pred EeCCCeEEEEEcCCcccc
Q 009266 222 AGSDEYTRLYDIRKYKWD 239 (538)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~ 239 (538)
|+ .+.+|+..+.++.
T Consensus 414 GG---~~e~ydp~~~~W~ 428 (480)
T PHA02790 414 GR---NAEFYCESSNTWT 428 (480)
T ss_pred CC---ceEEecCCCCcEe
Confidence 63 5778998877654
No 440
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.16 E-value=2.7 Score=39.05 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=51.8
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC----CCEEEEecCC
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GDILISGSDD 82 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----g~~l~t~~~d 82 (538)
.|+++++++ -+.|.|++++ ..|..... + ..+ .............++|+|+ +.+.++.+..
T Consensus 10 ~pdG~l~v~-e~~G~i~~~~-~~g~~~~~-v-----------~~~--~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 10 LPDGRLLVA-ERSGRIWVVD-KDGSLKTP-V-----------ADL--PEVFADGERGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp ETTSCEEEE-ETTTEEEEEE-TTTEECEE-E-----------EE---TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred eCCCcEEEE-eCCceEEEEe-CCCcCcce-e-----------ccc--ccccccccCCcccceeccccCCCCEEEEEEEcc
Confidence 466766554 5599999988 33443100 0 000 0123345667899999994 3333333311
Q ss_pred --------CeEEEEECCCC-------ceeeeecc---CCCCCeEEEEEeecCCCceEEEEeCCCc
Q 009266 83 --------RRVILWDWKTE-------RVKLSFHS---GHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (538)
Q Consensus 83 --------~~i~iw~~~~~-------~~~~~~~~---~~~~~v~~l~~~~~~~~~~l~s~~~dg~ 129 (538)
..|.-|.+..+ +.+..... .....-..|+|.| +|.+.++.+..+.
T Consensus 74 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp--DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 74 DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP--DGKLYVSVGDGGN 136 (331)
T ss_dssp -TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T--TSEEEEEEB-TTT
T ss_pred cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC--CCcEEEEeCCCCC
Confidence 23444544433 11211111 1233556799999 9977777776554
No 441
>PRK13684 Ycf48-like protein; Provisional
Probab=95.13 E-value=2.8 Score=39.02 Aligned_cols=160 Identities=10% Similarity=0.071 Sum_probs=85.9
Q ss_pred CCCCCeEEEEEeecCCCceEEEEeCCCcEEE-eecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEec
Q 009266 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRH-AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (538)
Q Consensus 102 ~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v-wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (538)
.-...++.+.+.| ++.+++++. .|.+.. ++-........ ...-...++.+.+.+++ .++++ +..|.+++=..
T Consensus 170 ~~~g~~~~i~~~~--~g~~v~~g~-~G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~ 242 (334)
T PRK13684 170 DAAGVVRNLRRSP--DGKYVAVSS-RGNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDP 242 (334)
T ss_pred CCcceEEEEEECC--CCeEEEEeC-CceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCCC-CEEEE-ecCCEEEEccC
Confidence 3356788999998 776665555 454432 22111112221 23345678999999988 45454 45576653223
Q ss_pred CCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC
Q 009266 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (538)
..+..-.....+.. .....+..+.+.|. +.+++ ++..|.|. .....++. .........-
T Consensus 243 d~G~sW~~~~~~~~------~~~~~l~~v~~~~~-~~~~~-~G~~G~v~-~S~d~G~t------------W~~~~~~~~~ 301 (334)
T PRK13684 243 DDLESWSKPIIPEI------TNGYGYLDLAYRTP-GEIWA-GGGNGTLL-VSKDGGKT------------WEKDPVGEEV 301 (334)
T ss_pred CCCCccccccCCcc------ccccceeeEEEcCC-CCEEE-EcCCCeEE-EeCCCCCC------------CeECCcCCCC
Confidence 33332222111100 01124778899986 45544 55667554 33333220 0000000111
Q ss_pred ccceEEEEEcCCCCEEEEEcCCeEEEeec
Q 009266 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~~~~i~~~d~ 289 (538)
......+.|..+++.++++..|.|..|+-
T Consensus 302 ~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 302 PSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CcceEEEEEeCCCceEEECCCceEEEecC
Confidence 24678888888889999999998887763
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.03 E-value=0.13 Score=30.26 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCC--cEEEEEcCCCcEEEEecCCC
Q 009266 151 GRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTG 183 (538)
Q Consensus 151 ~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~ 183 (538)
+.|+++.|+|... .+|+.+-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999998663 58888888899999999963
No 443
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=95.02 E-value=4.8 Score=42.17 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=107.9
Q ss_pred EEEEecCCCeEEEEECCCCceeeee-------ccCCCCCeEEEEEeecCCCceEEEEeCC---CcEEEeeccc--C--c-
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSF-------HSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILE--R--G- 139 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~v~vwd~~~--~--~- 139 (538)
-+++-...|.|++|=.+........ ...-...|+..++.+..+|+.++.++.+ +.|++|.+.- + .
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 3455567799999976322211111 1123456777676643467666555544 7888876531 1 0
Q ss_pred -----eeeeeecc--------c-------------cCCCcEEEEEcC------CCCcEEEEEcC----CCcEEEEecCCC
Q 009266 140 -----GVETKLLG--------K-------------HQGRAHKLAIEP------GSPHVFYTCGE----DGLVQHFDLRTG 183 (538)
Q Consensus 140 -----~~~~~~~~--------~-------------~~~~v~~~~~~~------~~~~~l~s~~~----dg~i~iwd~~~~ 183 (538)
..+...+. . .-..++.+.|-+ ..+.+|++.+. ...|.-|.++..
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 00110010 0 113566777765 22345555442 346999998765
Q ss_pred Cee-eee-eecc---cC-----------CCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC-CCCC
Q 009266 184 AAT-ELF-TCRP---ID-----------DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST-DFGQ 246 (538)
Q Consensus 184 ~~~-~~~-~~~~---~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~ 246 (538)
... ... .... .. ..........|.+++...- +.+++.+..||+|.++|-.+.+..... ..+.
T Consensus 224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 311 110 0000 00 0000012345667776665 678999999999999999988665443 1111
Q ss_pred CCc---ccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEE
Q 009266 247 PAD---YFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (538)
Q Consensus 247 ~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~ 285 (538)
+.. ......+.-.....+..++|||.+..++... ++.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 110 0000001111122566799999998777766 55544
No 444
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.01 E-value=3.2 Score=40.20 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=40.5
Q ss_pred eeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee--cC---cceeeEEeecCCCCe-EEEeecCCceEEecCCCC
Q 009266 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE--AD---RHVVNCIEPHPHSTV-LASSGIESDIKILTPNAA 417 (538)
Q Consensus 345 i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~--~h---~~~v~~~~~s~~~~~-l~s~~~dg~v~vw~~~~~ 417 (538)
|..+.- .|+++ |..|+.+|.++. +.+.++....+. .| ...|..+..-|++++ |++|+ .|..|+-+..
T Consensus 421 V~aive-d~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~---gva~~~sq~~ 493 (671)
T COG3292 421 VSAIVE-DPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAGS---GVAAWESQRR 493 (671)
T ss_pred eeeeee-cCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEecc---eeeeeccccc
Confidence 566665 78888 778888886654 333333333322 11 245788889999994 55543 3566665544
No 445
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=95.01 E-value=6.2 Score=42.34 Aligned_cols=21 Identities=14% Similarity=0.204 Sum_probs=15.2
Q ss_pred CccceEEEEEcCCCCEEEEEc
Q 009266 260 EQVGITGLAFSDQSELLVSYN 280 (538)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~ 280 (538)
+-..+.++|.+|+|..+++-.
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred ccCCcceEEECCCCcEEEecC
Confidence 345678899999997766544
No 446
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=1.5 Score=36.43 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=78.2
Q ss_pred CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC---CCcEEEE
Q 009266 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLA 157 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---~~v~~~~ 157 (538)
.+|.-.++|..+-+++.++ ...+.=+.++. ++..|+.+....+++.-|..+-....+....-.. ..++-+.
T Consensus 109 ~egvaf~~d~~t~~~lg~~--~y~GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE 182 (262)
T COG3823 109 KEGVAFKYDADTLEELGRF--SYEGEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELE 182 (262)
T ss_pred ccceeEEEChHHhhhhccc--ccCCcceeeec----CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeeccccccee
Confidence 4677788888887777666 23344455544 6677777777777887776654433222121112 2334444
Q ss_pred EcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCc--ceeeeeEEEEEcCCCCcEEEEE
Q 009266 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
|-. | .+.+-.-....|...+..+|+.+..+........-+. .+..-.+.|++.|+..+++++|
T Consensus 183 ~Vd-G-~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 183 WVD-G-ELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eec-c-EEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 443 4 3445555556677778888887776654433221111 1233578899999866777776
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=1 Score=41.94 Aligned_cols=122 Identities=16% Similarity=0.307 Sum_probs=80.0
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec---cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~ 136 (538)
..++|.++.||+|.+.||.--.+++|.+++....+...... +.....|....|+. ..-+|..+..| +-+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEEEEc
Confidence 46799999999999999999999999999985444332221 23345688899985 45666665544 5666554
Q ss_pred cCceeeeeeccccCCCcEEEEEcCCCCcEEEEEc-CCCcEEEEecCCCCee
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAAT 186 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~ 186 (538)
..+... +....|.-.|.-..|.++..-.|++.+ ..+++.=+-++++...
T Consensus 141 pekrsl-RlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 141 PEKRSL-RLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred hhhhhh-hhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 332211 225668888988999988744444444 4445555555555443
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.86 E-value=2 Score=36.06 Aligned_cols=118 Identities=15% Similarity=0.073 Sum_probs=64.5
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC---C---eEEEE-EcCCc
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---E---YTRLY-DIRKY 236 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g---~v~iw-d~~~~ 236 (538)
.+|++ ...+.|.+|++.+..+....... .-+.|..+.++.. |.+|++-=.+ . .+|+| +++..
T Consensus 30 ~Lfva-~~g~~Vev~~l~~~~~~~~~~F~---------Tv~~V~~l~y~~~-GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 30 ALFVA-ASGCKVEVYDLEQEECPLLCTFS---------TVGRVLQLVYSEA-GDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred eEEEE-cCCCEEEEEEcccCCCceeEEEc---------chhheeEEEeccc-cceEEEEEeecCCccceEEEEEEEhhhh
Confidence 34443 55678999999844433322222 3347899999997 7888875432 2 55664 23322
Q ss_pred cc----cCCCCCCCCCcccC-------CCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCC
Q 009266 237 KW----DGSTDFGQPADYFC-------PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (538)
Q Consensus 237 ~~----~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (538)
+. ......|.+..... ...+.-.-..++.+++..|-.--|+.++.+.+.+|.+...
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 11 11011111111000 0011112245778888888655677778888999987653
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=94.76 E-value=3.5 Score=38.35 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEE-EEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCe
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRL-YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 283 (538)
.+..+.+.|+ +.+++++ ..|.+.. ++-...... .........++++.+.+++++++++..+.
T Consensus 174 ~~~~i~~~~~-g~~v~~g-~~G~i~~s~~~gg~tW~---------------~~~~~~~~~l~~i~~~~~g~~~~vg~~G~ 236 (334)
T PRK13684 174 VVRNLRRSPD-GKYVAVS-SRGNFYSTWEPGQTAWT---------------PHQRNSSRRLQSMGFQPDGNLWMLARGGQ 236 (334)
T ss_pred eEEEEEECCC-CeEEEEe-CCceEEEEcCCCCCeEE---------------EeeCCCcccceeeeEcCCCCEEEEecCCE
Confidence 6788999996 5555544 4554432 111111110 01112345789999999999888887776
Q ss_pred EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc
Q 009266 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (538)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~ 363 (538)
+++=....+..-. .+. .........+..+.+ .|+++.+++| .
T Consensus 237 ~~~~s~d~G~sW~-----------------------------------~~~-~~~~~~~~~l~~v~~-~~~~~~~~~G-~ 278 (334)
T PRK13684 237 IRFNDPDDLESWS-----------------------------------KPI-IPEITNGYGYLDLAY-RTPGEIWAGG-G 278 (334)
T ss_pred EEEccCCCCCccc-----------------------------------ccc-CCccccccceeeEEE-cCCCCEEEEc-C
Confidence 5432222221100 000 000001112677887 8887766655 4
Q ss_pred CCeEEEeeccCcceeEEeec---CcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 364 CGRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
.|.|. .....++....+.. -....+.+.|..+++.++ .+..|.|..|+-.
T Consensus 279 ~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 279 NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecCC
Confidence 56554 34445554444332 123577788877766665 4456888777643
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.53 E-value=0.013 Score=58.46 Aligned_cols=119 Identities=13% Similarity=0.038 Sum_probs=69.4
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEE-----------EeecCCCceEEEEeCCCcEEE
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAK-----------IMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~-----------~~~~~~~~~l~s~~~dg~v~v 132 (538)
|.-+-|.+...++..+-.++.|++.++.+... .+..+|...+..++ .+| ||..|+.++.||.++.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSP--DGTVFAWAISDGSVGF 261 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCC--CCcEEEEeecCCccce
Confidence 33333444667888888889998887664432 33355766655443 577 9999999999999999
Q ss_pred eeccc-Ccee--eeeeccccC-CCcEEEEEcCCCC--------cEEEEEc-CCCcEEEEecCCCCee
Q 009266 133 AQILE-RGGV--ETKLLGKHQ-GRAHKLAIEPGSP--------HVFYTCG-EDGLVQHFDLRTGAAT 186 (538)
Q Consensus 133 wd~~~-~~~~--~~~~~~~~~-~~v~~~~~~~~~~--------~~l~s~~-~dg~i~iwd~~~~~~~ 186 (538)
|.+.- ++.. ..+....|. ++-.|..|+.+.. .++++++ ....+++|.-...+|.
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 98642 2111 112234455 2333333333210 1234443 3455888887766665
No 451
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=2.4 Score=35.20 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=39.4
Q ss_pred cEEEEEcCC--CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 164 HVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 164 ~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
+++.+.+.- ..|++|++.+++.+...+..+...+ ...++.+ +..+.+..-.+|.-.+||..+.+..+.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~F-----gEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVF-----GEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCcccc-----ccceeec-----cceEEEEEeccceeEEEChHHhhhhcc
Confidence 667766654 3599999999988766554421100 0012211 123344445677778899888765444
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.45 E-value=1.2 Score=42.11 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=44.4
Q ss_pred CCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 354 ~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
..-|||+|+..|-|++||.-.-.....+++-...|..+..+.+|++|++.+. ..|.+-++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 3459999999999999997555555566777788999999999997655543 34444444
No 453
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.41 E-value=3.4 Score=42.63 Aligned_cols=94 Identities=7% Similarity=0.109 Sum_probs=55.5
Q ss_pred ccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCC-CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecc
Q 009266 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP-NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
.-.|..+.++|+|++|+..+...|.|..+...-.. ..+............ ..-...+..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~-------------------~v~~~~~~~- 143 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTV-------------------PVDERFFTS- 143 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEE-------------------EechhhccC-
Confidence 35799999999999999998777777766432100 001000000000000 000011111
Q ss_pred ccceeeeEEEEecCC---CcEEEEeccCCeEEEeeccCc
Q 009266 340 RNCVTVKGVNFFGPK---CEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 340 ~~~~~i~~v~~~s~~---~~~l~~gs~dg~i~iwd~~~~ 375 (538)
.....|..+.| +|. +..|++=+.|++||+||+...
T Consensus 144 ~~~~~i~qv~W-hP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRW-HPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEE-cCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 22235889999 776 578999999999999999654
No 454
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.22 E-value=3.8 Score=36.46 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=119.1
Q ss_pred CCcEEEEEcCCCCcEEEEEcCCCcEEEEecC------CCCeeeeeeecccCCCCCcceeeeeEEEEEcCC----------
Q 009266 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR------TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---------- 214 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------- 214 (538)
..-+.|+++|.+ .+.++....+...+|+.. ..+.+ ....... .+.......+.+.|+..
T Consensus 23 ~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L-~vtiP~~---~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 23 RNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPL-VVVIPAP---PPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred cccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccce-EEEecCC---CCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 345789999988 466777777899999986 11111 1221111 01111224566666632
Q ss_pred -CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCC-CccceEEEEEcCC--CCEEEEEc--CCeEEEee
Q 009266 215 -NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD-EQVGITGLAFSDQ--SELLVSYN--DEFIYLFT 288 (538)
Q Consensus 215 -~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~--~~~l~~~~--~~~i~~~d 288 (538)
+...++.++++|+|.-|...-...... . .....-.. ...--..+++... +.+|..+. .++|.+||
T Consensus 98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~-------~--~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 98 TGPSRFLFVTEDGTLSGWAPALGTTRMT-------R--AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred ccceeEEEEeCCceEEeecCcCCccccc-------c--cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 113467788999999998543321000 0 00000001 1122344555543 56666665 56899998
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
-.-.+....-...... ....-...-+..-.....|+-..- .++++.=+.|..-|.|-
T Consensus 169 ~~f~~~~~~g~F~DP~----------------------iPagyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~Vd 225 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPA----------------------LPAGYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVN 225 (336)
T ss_pred CccccccCCCCccCCC----------------------CCCCCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEE
Confidence 6543221110000000 000000011111111111222222 44444445566668999
Q ss_pred EeeccCcceeEEeec--CcceeeEEeecC------CCCeEEEeecCCceEEecCCCCcc
Q 009266 369 IWKKKGGELIRVIEA--DRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 369 iwd~~~~~~~~~~~~--h~~~v~~~~~s~------~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+|++ .|++++++.. .-...+.|+..| .+.+|+---.||+|.+||..+++.
T Consensus 226 vFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 226 VFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred EEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 9997 7888887742 224567777755 456777667799999999987654
No 455
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.20 E-value=0.05 Score=54.48 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=52.6
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEEecC--CCCeeeeeeecccCCCCCccee
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLR--TGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
.+.|++-+..+.-. ....+++.++.|..+.|.... ++.. -.-|.+.||++. .|+....+..+.......
T Consensus 110 ~~~vrvaN~~~sm~-~~~l~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs---- 181 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMR-HNELAKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS---- 181 (1283)
T ss_pred hhhhhhccCcchhH-HHHHHhcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCC----
Confidence 46677777654322 112256777888888885422 2221 223667888765 455544444333222211
Q ss_pred eeeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCC
Q 009266 204 VNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 204 ~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~ 235 (538)
.+.-+.|.|- +..++..+-.++.|++..+..
T Consensus 182 -~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 182 -DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR 214 (1283)
T ss_pred -CcceeeecccccccceeeeccCCCceeEeeech
Confidence 2333444431 245666666777777766654
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=1.1 Score=42.68 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred CceEEeeccCCceEEeeeccCceeccccc-hhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFA-LRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
.+.++.+-.| .+..|+....-++...+. +...+.....+.++.+.-...-.-.|..+..++.|..++-.|.+|.+.++
T Consensus 52 trN~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 52 TRNVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred ccchhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEE
Q ss_pred ECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC--CcEE
Q 009266 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS--PHVF 166 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l 166 (538)
=......-..+ ......|+|=.+.- +.+++.+.+. +. +..++|+|+. ...|
T Consensus 131 Lp~rwG~~s~~-eDgk~~v~CRt~~i--~~~~ftss~~-------------------lt-----l~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 131 LPKRWGKNSEF-EDGKSTVNCRTTPV--AERFFTSSTS-------------------LT-----LKQAAWHPSSILDPHL 183 (741)
T ss_pred chhhcCcccee-cCCCceEEEEeecc--cceeeccCCc-------------------ee-----eeeccccCCccCCceE
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
+.-+.|..||+|++.....+........... ....+.++
T Consensus 184 ~iL~sdnviRiy~lS~~telylqpgepgRS~----tn~Si~sF 222 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYLQPGEPGRSP----TNVSILSF 222 (741)
T ss_pred EEEecCcEEEEEecCCcchhhccCCCcCCCC----ccceeecc
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.14 E-value=0.37 Score=41.46 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=51.5
Q ss_pred CcEEEEEeCCCeEEEEEcCCccccCCC-CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCC
Q 009266 216 ANLFAVAGSDEYTRLYDIRKYKWDGST-DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (538)
Q Consensus 216 ~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (538)
+.+|++-+.+|.+++||+.+++..-.. .+.+.... .. .........|..+.++.+|.-|++-+++..+.|+...+
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~-~~-~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS-SP-VSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc-cc-cccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 578999999999999999998754331 10000000 00 00003467899999999999999999999999987753
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.81 E-value=6.3 Score=37.51 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=81.1
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee-eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce-
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG- 140 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~- 140 (538)
....+..+++|.+++.+..-..++-|+ .|... ..........++.+.|.+ ++.+++++. .|.+. |....+..
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~--dg~l~l~g~-~G~l~-~S~d~G~~~ 313 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRA--DGGLWLLTR-GGGLY-VSKGTGLTE 313 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcC--CCCEEEEeC-CceEE-EecCCCCcc
Confidence 345566778888887776543334444 33321 112234456789999988 887776664 45543 33333321
Q ss_pred ----eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 141 ----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 141 ----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
............+..+.|.+++ . ++.++..|.+.... ..++.-........ ....++.+.|.+. +
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~-------~~~~ly~v~f~~~-~ 382 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKK-E-AWAAGGSGILLRST-DGGKSWKRDKGADN-------IAANLYSVKFFDD-K 382 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCC-c-EEEEECCCcEEEeC-CCCcceeEccccCC-------CCcceeEEEEcCC-C
Confidence 1111111122358889999877 4 45556667766653 33433222221110 1235788998775 3
Q ss_pred cEEEEEeCCCeEEEE
Q 009266 217 NLFAVAGSDEYTRLY 231 (538)
Q Consensus 217 ~~l~~~~~dg~v~iw 231 (538)
...+.+.+|.|.-|
T Consensus 383 -~g~~~G~~G~il~~ 396 (398)
T PLN00033 383 -KGFVLGNDGVLLRY 396 (398)
T ss_pred -ceEEEeCCcEEEEe
Confidence 44445667776554
No 459
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.74 E-value=5.8 Score=36.84 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=86.5
Q ss_pred CCCeEEEEEeecCCCceEEEEeCCCc------EEEeecccC----ce---eeeeeccccCC--------CcEEEEEcCCC
Q 009266 104 NDNVFQAKIMPFTDDRSIVTCAADGQ------VRHAQILER----GG---VETKLLGKHQG--------RAHKLAIEPGS 162 (538)
Q Consensus 104 ~~~v~~l~~~~~~~~~~l~s~~~dg~------v~vwd~~~~----~~---~~~~~~~~~~~--------~v~~~~~~~~~ 162 (538)
-+.+..|.+.| ++..+++.+.+|. +..+.+... .. .....+....+ -.-+|++.+++
T Consensus 19 ~GGlSgl~~~~--~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDP--DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeC--CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 45677888886 5555666666666 554444331 00 11111221111 23478886666
Q ss_pred CcEEEEEcCC------CcEEEEecCCCCeeeeeeecccCCC-----CCcceeeeeEEEEEcCCCCcEEEEEeCCC-----
Q 009266 163 PHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDR-----RNYMTVVNLNAIAIDPRNANLFAVAGSDE----- 226 (538)
Q Consensus 163 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----- 226 (538)
.++++.-.. ..|+.++.. ++....+..+..... .+......+-+|+++|+ ++.|+++.+..
T Consensus 97 -~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~d-G~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 97 -SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPD-GRTLFAAMESPLKQDG 173 (326)
T ss_pred -CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCC-CCEEEEEECccccCCC
Confidence 666766666 788888876 666655533322100 23335567899999998 56555544322
Q ss_pred ---------eEEEEEcCCcc---ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE
Q 009266 227 ---------YTRLYDIRKYK---WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (538)
Q Consensus 227 ---------~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (538)
.++|+...... ....+.+... ..........|..+.+.+++++|+.-
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld------~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLD------PPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCC------ccccccCCCCceeEEEECCCcEEEEE
Confidence 14454443221 1111110000 00000035678889999999877753
No 460
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.51 E-value=7.2 Score=37.23 Aligned_cols=154 Identities=10% Similarity=0.089 Sum_probs=82.9
Q ss_pred CCceEEEEeCCCcEEEeecccCceee--eeeccccCCCcEEEEEcC---CCCcEEEEEcCCCcEEEEecCCCC-------
Q 009266 117 DDRSIVTCAADGQVRHAQILERGGVE--TKLLGKHQGRAHKLAIEP---GSPHVFYTCGEDGLVQHFDLRTGA------- 184 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~------- 184 (538)
+...|++|+..|.++|+......... ...-..-..+|..|..-+ ....+.++.-.-..+.||.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 45689999999999999986543211 111122346777776542 222233344556778888873221
Q ss_pred --eeeeeeecccCCCCCcceeeeeEEEEEcCC-CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCc
Q 009266 185 --ATELFTCRPIDDRRNYMTVVNLNAIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (538)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (538)
.+..+..|.. +. .........|-.. +..+|.+-+.||.+.+|+-........ .+..+
T Consensus 116 ~~~L~~~yeh~l---~~--~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~----------lp~~l----- 175 (418)
T PF14727_consen 116 QYQLELIYEHSL---QR--TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF----------LPDFL----- 175 (418)
T ss_pred EEEEEEEEEEec---cc--ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE----------cCCCC-----
Confidence 1111111111 00 1112222233221 246888999999999999776432111 11111
Q ss_pred cceEEEEEcCCCCEEEEEcCC-eEEEeeccC
Q 009266 262 VGITGLAFSDQSELLVSYNDE-FIYLFTQDM 291 (538)
Q Consensus 262 ~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~ 291 (538)
-...++|.+.-..+++++.. .+..|....
T Consensus 176 -lPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 176 -LPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred -CCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 12236777777777777654 788887643
No 461
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.44 E-value=4.2 Score=34.28 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=87.7
Q ss_pred ceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC---C---cEEEE-ecCCC----Ceee
Q 009266 119 RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---G---LVQHF-DLRTG----AATE 187 (538)
Q Consensus 119 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g---~i~iw-d~~~~----~~~~ 187 (538)
..|+.+...+.|.+|++....+.....+. .-+.|..+.++..| .+|+|--.+ . .+|+| +.+.. ..+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 55555566788999999855554444454 34789999999999 577775322 2 56765 22222 1111
Q ss_pred -eeeecccCCCCC-----------cceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcccc-CCCCCCCCCcccCCC
Q 009266 188 -LFTCRPIDDRRN-----------YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD-GSTDFGQPADYFCPP 254 (538)
Q Consensus 188 -~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~ 254 (538)
.+..+....... .....++.+++-.|-.|++++. .++++.||.++..... .... ..-+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~~~~~~~~~----~lDFe~~ 180 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQTIQSEKFS----FLDFERS 180 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEEEEeccccc----EEechhh
Confidence 111111100000 0012356788888876766664 3468999998876531 1100 0011111
Q ss_pred CccCCCccceEEEEEcCCCCEEEEEcCCeEEEeecc
Q 009266 255 NLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (538)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (538)
.+..+..-.+..+++. +.++|..++..++++.+.
T Consensus 181 l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred hhheecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 1111112234555554 568888888888887653
No 462
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.38 E-value=6.2 Score=36.10 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=39.7
Q ss_pred CCEEEEecCCCeEEEEECCCC-ceeeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeeccc
Q 009266 73 GDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILE 137 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~ 137 (538)
+++|+.|..+|...+ ++... .....+ .+..+|+++...+ .-+.|++-+ ....++++++..
T Consensus 13 ~~~lL~GTe~Gly~~-~~~~~~~~~~kl--~~~~~v~q~~v~~--~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 13 GKWLLVGTEEGLYVL-NISDQPGTLEKL--IGRRSVTQIWVLE--ENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred CcEEEEEeCCceEEE-EcccCCCCeEEe--cCcCceEEEEEEh--hhCEEEEEeCCcceEEEEEHHH
Confidence 368999999985444 45542 222333 3667899999998 666665544 344599999843
No 463
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.34 E-value=2.9 Score=32.12 Aligned_cols=117 Identities=10% Similarity=0.105 Sum_probs=71.8
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCce-------eeeeccCCCCCeEEEEEeec---CCCceEEEEeCCCcEEEee
Q 009266 65 NTVSFNTDGDILISGSDDRRVILWDWKTERV-------KLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQ 134 (538)
Q Consensus 65 ~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~-------~~~~~~~~~~~v~~l~~~~~---~~~~~l~s~~~dg~v~vwd 134 (538)
..-.|......|+.++.-|+|.|++...... ..+++ .-...|++|+-.|+ .....|+.|+. ..+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 3445666667888888889999998654321 11221 34557888876663 13456666664 6799999
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCC--CcEEEEEcCCCcEEEEecCCCCee
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGS--PHVFYTCGEDGLVQHFDLRTGAAT 186 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~ 186 (538)
+..+..+.. +.-...|+++.+-.-+ +.-|+..+.+..|.-||....+..
T Consensus 80 V~~N~d~Fy---ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 80 VENNSDLFY---KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred cccCchhhh---hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 988776553 3334667777663211 122444455577888876655443
No 464
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.26 E-value=12 Score=39.24 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=29.8
Q ss_pred cCcEEEEEEcCCC------CEEEEecCCCeEEEEECCCCceeee
Q 009266 61 RGCVNTVSFNTDG------DILISGSDDRRVILWDWKTERVKLS 98 (538)
Q Consensus 61 ~~~v~~~~~s~~g------~~l~t~~~d~~i~iw~~~~~~~~~~ 98 (538)
...|.|+++.++. ++++.|+.++++++..+.-..++..
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ 625 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQP 625 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEE
Confidence 4678999998864 6799999999999999875444333
No 465
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.10 E-value=1.3 Score=36.52 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=24.5
Q ss_pred eeeEEEEecCCC------cEEEEeccCCeEEEeeccC
Q 009266 344 TVKGVNFFGPKC------EYVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 344 ~i~~v~~~s~~~------~~l~~gs~dg~i~iwd~~~ 374 (538)
.+..++| ||.| -+||+-+.++.|.||....
T Consensus 87 ~vv~~aW-SP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAW-SPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEE-CCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4889998 9854 3788999999999998653
No 466
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.05 E-value=1 Score=38.79 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=48.6
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCCceeeee------cc-------CCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec
Q 009266 69 FNTDGDILISGSDDRRVILWDWKTERVKLSF------HS-------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 69 ~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~------~~-------~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~ 135 (538)
+...+.+|++-+.+|.+++||+.+++.+..- +. .....|..+.++. +|.-|++-+ +|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEecc
Confidence 3446889999999999999999988764332 22 3455677777776 776666654 467777876
Q ss_pred ccCcee
Q 009266 136 LERGGV 141 (538)
Q Consensus 136 ~~~~~~ 141 (538)
.-+..+
T Consensus 95 ~L~~W~ 100 (219)
T PF07569_consen 95 DLGCWI 100 (219)
T ss_pred ccceeE
Confidence 544443
No 467
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.34 E-value=3.7 Score=39.12 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=87.2
Q ss_pred CCceEE-EEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC-------cEEEEEcCCCcEEEEecCCCC-eee
Q 009266 117 DDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP-------HVFYTCGEDGLVQHFDLRTGA-ATE 187 (538)
Q Consensus 117 ~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~s~~~dg~i~iwd~~~~~-~~~ 187 (538)
+..+|+ .++....++-.|+..++.+.. ..-|... -+.|.|... +.| +|-.+..|.-.|.+-.. .+.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvvee--W~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEE--WDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeE--eecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCcee
Confidence 444444 344455666677777776665 3334332 456666431 233 34445556656665433 222
Q ss_pred eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEE
Q 009266 188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL 267 (538)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (538)
...... +.......+..-... -++|+++..|-|++||--..+ ....+++-...|..+
T Consensus 553 v~esKd------Y~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r---------------AKtalP~lG~aIk~i 609 (776)
T COG5167 553 VVESKD------YKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR---------------AKTALPGLGDAIKHI 609 (776)
T ss_pred eeeehh------ccccccccccccccC--ceEEEecCCCceeeehhhcch---------------hhhcCcccccceeee
Confidence 222111 112223444444443 489999999999999964432 223333445689999
Q ss_pred EEcCCCCEEEEEcCCeEEEeeccC
Q 009266 268 AFSDQSELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 268 ~~s~~~~~l~~~~~~~i~~~d~~~ 291 (538)
..+.+|++|++.+...+.+.++.-
T Consensus 610 dvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 610 DVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred EeecCCcEEEEeecceEEEEeccc
Confidence 999999999999999998888764
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.73 E-value=5.3 Score=40.00 Aligned_cols=328 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 143 (538)
++++.-+|.|+-++.++.||.|++|++...+..... ....+-..+.| .+.-|+++..|..+.-|.-..-...+.
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~--~~~~p~~nlv~----tnhgl~~~tsdrr~la~~~dgvvqqqf 90 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC--EEAKPKENLVF----TNHGLVTATSDRRALAWKEDGVVQQQF 90 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccchhhhh--hhcCCccceee----eccceEEEeccchhheeeccCcchhhc
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcC------------------------CCcEEEEecCCCCeeeeeeecccCCCCC
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGE------------------------DGLVQHFDLRTGAATELFTCRPIDDRRN 199 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (538)
-.-........++...|...+.+-+.+. -..|.+-|+.++.....+.....
T Consensus 91 dyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~----- 165 (1636)
T KOG3616|consen 91 DYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGL----- 165 (1636)
T ss_pred cccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCc-----
Q ss_pred cceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE
Q 009266 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (538)
Q Consensus 200 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (538)
.|--+.+. |....+.+....+|.|=|+.+.+ ...+.-..+.-.---|-.........
T Consensus 166 -----aidelkil--gkdryli~~ts~siii~d~es~r----------------fsei~wqgsgg~ekfffd~~n~cli~ 222 (1636)
T KOG3616|consen 166 -----AIDELKIL--GKDRYLIAHTSESIIIADLESNR----------------FSEIAWQGSGGHEKFFFDFENCCLIF 222 (1636)
T ss_pred -----chhhhhhc--cccceEEeeccccEEEeecccch----------------hhhhhcccCCCcceeeeecCcEEEEE
Q ss_pred cCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCc------------------------------
Q 009266 280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV------------------------------ 329 (538)
Q Consensus 280 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 329 (538)
..|.+.+........+..+...-.........+...-.......++....
T Consensus 223 nageltlveyg~d~slg~vrte~~nphlisvqike~~qksygrnfdse~n~~~a~~~di~tgqicvfsdflqrrtssvff 302 (1636)
T KOG3616|consen 223 NAGELTLVEYGNDDSLGSVRTEFMNPHLISVQIKEACQKSYGRNFDSEDNKKLAEHIDIKTGQICVFSDFLQRRTSSVFF 302 (1636)
T ss_pred ecCeeEEEEecCCCcchhhhhhhcCceeeehHHHHHHHHhhCCCCCcchhhhHHHHhccccCceeeehhhhhhcccccee
Q ss_pred ------------------------ccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCc
Q 009266 330 ------------------------RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (538)
Q Consensus 330 ------------------------~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~ 385 (538)
+.....+..|.+. |--+.. ...+..|..-...-.+.++|+.+.+....+.
T Consensus 303 iikakakifndlqlphi~ipvdli~g~~~~~inh~~~--vdwiel-ne~~~kllfrdkk~kl~l~di~s~qksmiln--- 376 (1636)
T KOG3616|consen 303 IIKAKAKIFNDLQLPHIAIPVDLIGGQNEGFINHEGA--VDWIEL-NERAHKLLFRDKKLKLHLVDIESCQKSMILN--- 376 (1636)
T ss_pred eehhhhhhcccccCcceeeeeecccCccccccccccc--ccceec-cchhhhhhcccccceeEEEEcccchHHHHHH---
Q ss_pred ceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceeeeec
Q 009266 386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVLIP 432 (538)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 432 (538)
-.+-+.|-|-+..|+.-+.|....-|++..+++.+.....+.+..+
T Consensus 377 -fcsymqwvp~sdvivaqn~dnl~iwyn~d~peqvt~~kikgdv~~l 422 (1636)
T KOG3616|consen 377 -FCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQVTMFKIKGDVEAL 422 (1636)
T ss_pred -HhhhheeccCcceEEecCCCceEEEecCCcchhheeeEecccchhh
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.65 E-value=2 Score=35.41 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCC-----CcEEEEEcCCCcEEEEecCC
Q 009266 151 GRAHKLAIEPGS-----PHVFYTCGEDGLVQHFDLRT 182 (538)
Q Consensus 151 ~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~ 182 (538)
..|..++|+|.| ..+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 46889999999999997654
No 470
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.39 E-value=0.99 Score=26.50 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=27.7
Q ss_pred CCCcEEEEec-cCCeEEEeeccCcceeEEeecCcceeeEEee
Q 009266 353 PKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (538)
Q Consensus 353 ~~~~~l~~gs-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (538)
|++++|+++. ..++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5667666544 5789999999999888877753 33445554
No 471
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.38 E-value=0.03 Score=52.01 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=99.8
Q ss_pred CCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC
Q 009266 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (538)
Q Consensus 103 ~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 182 (538)
+-.......|-| .+.-++.++.+..|..||-....... . ..++....++|..+++..++.+-..+.+.+|++.+
T Consensus 33 alv~pi~~~w~~--e~~nlavaca~tiv~~YD~agq~~le---~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 33 ALVGPIIHRWRP--EGHNLAVACANTIVIYYDKAGQVILE---L-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred hccccceeeEec--CCCceehhhhhhHHHhhhhhcceecc---c-CCchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence 333444567888 77778888888889999854322211 1 23455677888888888888888889999999987
Q ss_pred CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCcc
Q 009266 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (538)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (538)
....+.-.... + .-.-+.|++- ...++.+...|.++|++..+.+. ....+.|..
T Consensus 107 eytqqLE~gg~--------~--s~sll~wsKg-~~el~ig~~~gn~viynhgtsR~---------------iiv~Gkh~R 160 (615)
T KOG2247|consen 107 EYTQQLESGGT--------S--SKSLLAWSKG-TPELVIGNNAGNIVIYNHGTSRR---------------IIVMGKHQR 160 (615)
T ss_pred hhHHHHhccCc--------c--hHHHHhhccC-CccccccccccceEEEeccchhh---------------hhhhccccc
Confidence 54332211110 1 1122678884 67888888999999999887642 222334788
Q ss_pred ceEEEEEcCCCCEEEEEcC
Q 009266 263 GITGLAFSDQSELLVSYND 281 (538)
Q Consensus 263 ~i~~~~~s~~~~~l~~~~~ 281 (538)
.++++++.+.+..+....+
T Consensus 161 Rgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 161 RGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred ceeEEEecccceeeecCcH
Confidence 9999999998876655443
No 472
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.34 E-value=14 Score=35.30 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=64.6
Q ss_pred ccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccc
Q 009266 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
...+.++.|.+++.+++++..+.+.. ....+..-.. ..........
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~---------------------------------~~f~~~~~~~ 325 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEED---------------------------------FDFEEADIKS 325 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccc---------------------------------cceeecccCC
Confidence 45688999999999998887776543 3222210000 0011111111
Q ss_pred cceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee---cCcceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 341 ~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
....+..+.| .+++..+++|. .|.|.... ..|+.....+ .-....+.+.|.++++.+++| .+|.|.-|
T Consensus 326 ~~~~l~~v~~-~~d~~~~a~G~-~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 326 RGFGILDVGY-RSKKEAWAAGG-SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceEEEEE-cCCCcEEEEEC-CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 1123788888 77777666654 67665543 4555544433 223467899998877766655 46766544
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.21 E-value=13 Score=34.84 Aligned_cols=199 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCce--EEEEeCC----CcEEEeecccCceeee
Q 009266 70 NTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS--IVTCAAD----GQVRHAQILERGGVET 143 (538)
Q Consensus 70 s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--l~s~~~d----g~v~vwd~~~~~~~~~ 143 (538)
.|...+|+...+.+-+.+|+++ |+.+..+..+....| .|.+.-.-+|+. |+.++.. .+|++|.+........
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-Dvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-DVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-EEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred CcccceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-eeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Q ss_pred ee------ccccCCCcEEEEEc---CCCCcEEEEEcCCCcEEEEecC-------CCCeeeeeeecccCCCCCcceeeeeE
Q 009266 144 KL------LGKHQGRAHKLAIE---PGSPHVFYTCGEDGLVQHFDLR-------TGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 144 ~~------~~~~~~~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
.. +......+..+|+. .++..+++....+|.+..|-+. +.+.++.|. -...+.
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-----------~~sQ~E 211 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-----------VGSQPE 211 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE------------SS-EE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-----------CCCcce
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC---EEEEEcCC--
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE---LLVSYNDE-- 282 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~~-- 282 (538)
.+..... ...|+.+-++.-|.-|+..-. ..............+....|..|++-.... ||++++.+
T Consensus 212 GCVVDDe-~g~LYvgEE~~GIW~y~Aep~--------~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 212 GCVVDDE-TGRLYVGEEDVGIWRYDAEPE--------GGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp EEEEETT-TTEEEEEETTTEEEEEESSCC--------C-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred EEEEecc-cCCEEEecCccEEEEEecCCC--------CCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Q ss_pred eEEEeecc
Q 009266 283 FIYLFTQD 290 (538)
Q Consensus 283 ~i~~~d~~ 290 (538)
...+|+..
T Consensus 283 sf~Vy~r~ 290 (381)
T PF02333_consen 283 SFAVYDRE 290 (381)
T ss_dssp EEEEEESS
T ss_pred eEEEEecC
No 474
>PLN02193 nitrile-specifier protein
Probab=91.11 E-value=17 Score=35.89 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=76.3
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceeeeecc---CCCCCeEEEEEeecCCCceEEEEeCCC-----cEEEeecccC
Q 009266 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHS---GHNDNVFQAKIMPFTDDRSIVTCAADG-----QVRHAQILER 138 (538)
Q Consensus 72 ~g~~l~t~~~d-----~~i~iw~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~~l~s~~~dg-----~v~vwd~~~~ 138 (538)
.+.+.+.|+.+ ..+.+||+.+.+....... .....-.+++. - ++++++.|+..+ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~--~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-D--EENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-E--CCEEEEECCCCCCCCcceEEEEECCCC
Confidence 45666667654 3578888877653221100 01111122222 2 567777777543 4667887766
Q ss_pred ceeeeeecc---ccCCCcEEEEEcCCCCcEEEEEcCC----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 139 GGVETKLLG---KHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 139 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
+........ ..... ..++.. ++ ++++.++.+ ..|.+||+.+.+-.......... . ......++.+
T Consensus 305 ~W~~~~~~~~~~~~R~~-~~~~~~-~g-kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P-~----~R~~~~~~~~ 376 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGG-AGLEVV-QG-KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRP-S----ERSVFASAAV 376 (470)
T ss_pred EEEeCCCCCCCCCCCCC-cEEEEE-CC-cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCC-C----CcceeEEEEE
Confidence 554321110 11111 122222 34 566777655 45889999877654332110000 0 0011122233
Q ss_pred cCCCCcEEEEEeCC--------------CeEEEEEcCCccccC
Q 009266 212 DPRNANLFAVAGSD--------------EYTRLYDIRKYKWDG 240 (538)
Q Consensus 212 ~~~~~~~l~~~~~d--------------g~v~iwd~~~~~~~~ 240 (538)
++++++.|+.. ..+.+||+.+.++..
T Consensus 377 ---~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~ 416 (470)
T PLN02193 377 ---GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWER 416 (470)
T ss_pred ---CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEE
Confidence 25677777753 247889988877643
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.03 E-value=7.3 Score=42.07 Aligned_cols=32 Identities=6% Similarity=-0.006 Sum_probs=26.7
Q ss_pred CCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 104 ~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
......++|.| ...+++.+...|.|+++-...
T Consensus 35 ~~~~~~~afD~--~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDP--TQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeecc--ccceEEEEEecccEEEecccc
Confidence 34566789999 899999999999999997653
No 476
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.96 E-value=0.032 Score=51.87 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=87.1
Q ss_pred eEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEE-EecCCCeEEEEEC
Q 009266 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI-SGSDDRRVILWDW 90 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-t~~~d~~i~iw~~ 90 (538)
-++.++.+..|..||-. |+.+.. + .-.+....++|..+|..++ .+-..+.+.||++
T Consensus 48 nlavaca~tiv~~YD~a-gq~~le---------------------~-n~tg~aldm~wDkegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 48 NLAVACANTIVIYYDKA-GQVILE---------------------L-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred ceehhhhhhHHHhhhhh-cceecc---------------------c-CCchhHhhhhhccccchhhhhhhcCCCeeechh
Confidence 36666667777777766 443311 1 1234556678887776554 4556788999999
Q ss_pred CCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEc
Q 009266 91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 170 (538)
.+... .++..+....-.-+.|++ ....++.+...|.+.|++..+.+.+.. ...|..+++++++.+.+ +.+.++
T Consensus 105 n~eyt-qqLE~gg~~s~sll~wsK--g~~el~ig~~~gn~viynhgtsR~iiv--~Gkh~RRgtq~av~lEd--~vil~d 177 (615)
T KOG2247|consen 105 NSEYT-QQLESGGTSSKSLLAWSK--GTPELVIGNNAGNIVIYNHGTSRRIIV--MGKHQRRGTQIAVTLED--YVILCD 177 (615)
T ss_pred hhhhH-HHHhccCcchHHHHhhcc--CCccccccccccceEEEeccchhhhhh--hcccccceeEEEecccc--eeeecC
Confidence 76543 222223233333378998 888999999999999999887766554 55599999999999987 344444
Q ss_pred CC
Q 009266 171 ED 172 (538)
Q Consensus 171 ~d 172 (538)
-+
T Consensus 178 cd 179 (615)
T KOG2247|consen 178 CD 179 (615)
T ss_pred cH
Confidence 33
No 477
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.87 E-value=13 Score=34.38 Aligned_cols=228 Identities=10% Similarity=0.001 Sum_probs=0.0
Q ss_pred CCceEEeeccCCc---------------eEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCC
Q 009266 9 NNKRARTSVDKAL---------------VDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG 73 (538)
Q Consensus 9 ~~~~l~t~~~d~~---------------v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 73 (538)
++.+++.|+.+.. |.+++....+. ++.....+........++++ ++
T Consensus 13 ~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~-----------------~W~~~~~lp~~r~~~~~~~~--~~ 73 (323)
T TIGR03548 13 GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNL-----------------KWVKDGQLPYEAAYGASVSV--EN 73 (323)
T ss_pred CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCce-----------------eEEEcccCCccccceEEEEE--CC
Q ss_pred CEEEEecCC-----CeEEEEECCCCce---eeeeccCCCCCeEEEEEeecCCCceEEEEeC-----CCcEEEeecccCce
Q 009266 74 DILISGSDD-----RRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQILERGG 140 (538)
Q Consensus 74 ~~l~t~~~d-----~~i~iw~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-----dg~v~vwd~~~~~~ 140 (538)
.+++.|+.+ ..+..|++.+.+. ...+.......-...+..- ++.+.+.|+. -..+..||+.+.+.
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCe
Q ss_pred eeeeeccccCCCcEEEEEcCCCCcEEEEEcCC----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
.....+......-.+++...+. +.+.|+.+ ..+.+||+.+.+-...-.......... ......+...++
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~--iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~-----~~~~~~~~~~~~ 224 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNE--LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPIS-----LLGAASIKINES 224 (323)
T ss_pred eECCCCCCCCCCcceEEEECCE--EEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCcee-----ccceeEEEECCC
Q ss_pred cEEEEEeCC-------------------------------------CeEEEEEcCCccccCCCCCCCCCcccCCCCccCC
Q 009266 217 NLFAVAGSD-------------------------------------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (538)
Q Consensus 217 ~~l~~~~~d-------------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (538)
.+++.|+.+ ..|.+||+.+.+
T Consensus 225 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~---------------------- 282 (323)
T TIGR03548 225 LLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGK---------------------- 282 (323)
T ss_pred EEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCe----------------------
Q ss_pred CccceEEEEEcCCCCEEEEEcCCeEEEe
Q 009266 260 EQVGITGLAFSDQSELLVSYNDEFIYLF 287 (538)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~~~~i~~~ 287 (538)
=..+..+...+....-++.-++.|+++
T Consensus 283 -W~~~~~~p~~~r~~~~~~~~~~~iyv~ 309 (323)
T TIGR03548 283 -WKSIGNSPFFARCGAALLLTGNNIFSI 309 (323)
T ss_pred -eeEcccccccccCchheEEECCEEEEE
No 478
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.77 E-value=6.6 Score=34.28 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC---CCcEEEeeccc----CceeeeeeccccCCCcEEEEEc
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILE----RGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~---dg~v~vwd~~~----~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
+||+.+++...-. .....-+.+-++.| +|++|.+|+. ...+++++... .........-.....--.+...
T Consensus 50 ~yD~~tn~~rpl~-v~td~FCSgg~~L~--dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 50 EYDPNTNTFRPLT-VQTDTFCSGGAFLP--DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEecCCCcEEecc-CCCCCcccCcCCCC--CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcc
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
|+| ++|+.|+......-+-.........................--..+...|+ |++|+.+.... .|||..+.+
T Consensus 127 ~DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPd-G~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 127 PDG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPD-GNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred CCC-CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCC-CCEEEEEcCCc--EEEeCCCCe
No 479
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=90.77 E-value=0.071 Score=53.80 Aligned_cols=66 Identities=14% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCCCC
Q 009266 473 DDGGGGGSGGGGDVDSDDDEEDDDDDNIDDNVDNDNDDESNEEAISYSDFDDYDVDLDVDDGVDGN 538 (538)
Q Consensus 473 ~~~~~~~~~~~~~~~~ddd~ddd~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (538)
++...+...+.++++++++++++++++++++++++++++++++.+++++.+...++....+++.++
T Consensus 437 qes~~e~~aEteedeEeEe~edeeeeEEeedddEEEEeede~D~deeedve~~~e~~~~~~eeee~ 502 (713)
T PF03344_consen 437 QESPTESKAETEEDEEEEEDEDEEEEEEEEDDDEEEEEEDEEDEDEEEDVEGSQEDDKDDDEEEED 502 (713)
T ss_dssp ------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
No 480
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=90.72 E-value=0.087 Score=49.90 Aligned_cols=59 Identities=37% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCCCC
Q 009266 480 SGGGGDVDSDDDEEDDDDDNIDDNVDNDNDDESNEEAISYSDFDDYDVDLDVDDGVDGN 538 (538)
Q Consensus 480 ~~~~~~~~~ddd~ddd~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (538)
++..+++++++++++++.++++++.+.++++++..+.+.+++++|..+++++++.+.+|
T Consensus 274 DG~~d~~~~e~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~~~~~~ 332 (375)
T PF03153_consen 274 DGAGDDSDDEEDDDDDDDDEDDEDKDKDEDDEDAINSDLDDSDDDVSDEDDEDDFDTDN 332 (375)
T ss_dssp ----------------------------------------------B-------STTS-
T ss_pred cCCCCCccccccccccccccccccccccccccccccCCcCCccccccccccccccCcCC
No 481
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=90.71 E-value=0.22 Score=47.91 Aligned_cols=56 Identities=29% Similarity=0.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCCCC
Q 009266 483 GGDVDSDDDEEDDDDDNIDDNVDNDNDDESNEEAISYSDFDDYDVDLDVDDGVDGN 538 (538)
Q Consensus 483 ~~~~~~ddd~ddd~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (538)
+.+++.|+.+++-.+++..+++..|+.+++++.++..++-+++++..+..|+|+|+
T Consensus 926 gsddE~deseeEvSEyeaS~dd~sdet~edees~e~seD~sedeSe~~~~DeE~gE 981 (1001)
T COG5406 926 GSDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGE 981 (1001)
T ss_pred CCcccccccchhhhhhhccCCCcccccccccccccccccccccccccccccccccc
No 482
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.63 E-value=25 Score=37.16 Aligned_cols=248 Identities=11% Similarity=-0.002 Sum_probs=0.0
Q ss_pred eeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCC
Q 009266 25 WLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN 104 (538)
Q Consensus 25 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~ 104 (538)
||...+.++......-............++....|..+.+..|+.-....+-.....+..+++--+.......-. ..-.
T Consensus 1 ~DP~~~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-i~~~ 79 (765)
T PF10214_consen 1 YDPTVGSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWS-IDDG 79 (765)
T ss_pred CCCCcCccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeE-cCCC
Q ss_pred CCeEEEEEe------ecCCCceEEEEeCCCcEEEee----------------cccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 105 DNVFQAKIM------PFTDDRSIVTCAADGQVRHAQ----------------ILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 105 ~~v~~l~~~------~~~~~~~l~s~~~dg~v~vwd----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
.+|..|+|. - ....++..-....+.|+. +.-.-......-.....+...++|+|..
T Consensus 80 ~PI~qI~fa~~~~~~~--~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 80 SPIKQIKFATLSESFD--EKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCeeEEEecccccccC--CcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Q ss_pred CcEEEEEcCCCcEEEEec----CCCCeeeeeeecccCCC-CCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcc
Q 009266 163 PHVFYTCGEDGLVQHFDL----RTGAATELFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
...||+....|...||++ +.......+........ ...........|.|.++ ...|++++. ..+.++|+.+..
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~-~~~lLv~~r-~~l~~~d~~~~~ 235 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSD-SNRLLVCNR-SKLMLIDFESNW 235 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCC-CCEEEEEcC-CceEEEECCCCC
Q ss_pred ccCCCCCCCCCcccCCC-CccCCCccceEEEEEcCC-CCEEEEEcCCeEEEeeccC
Q 009266 238 WDGSTDFGQPADYFCPP-NLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~i~~~d~~~ 291 (538)
... .........|..+.-+|. -.++...+...|..+++..
T Consensus 236 --------------~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 236 --------------QTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred --------------ccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.56 E-value=7.2 Score=35.00 Aligned_cols=118 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred eEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEec------CCCeEEEEECCCCce
Q 009266 22 VDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS------DDRRVILWDWKTERV 95 (538)
Q Consensus 22 v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~------~d~~i~iw~~~~~~~ 95 (538)
|++||..+.+.. ....+-.+.|+.|.|..+.++++.|. ....+..|++.+...
T Consensus 18 lC~yd~~~~qW~---------------------~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 18 LCLYDTDNSQWS---------------------SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred EEEEECCCCEee---------------------cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Q ss_pred eeeec---cCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeecccCceeeeee-ccccCCCcEEEEEcC
Q 009266 96 KLSFH---SGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKL-LGKHQGRAHKLAIEP 160 (538)
Q Consensus 96 ~~~~~---~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~ 160 (538)
...-- ..-.++|..+.+......++.+.|. ..+...|......+...... .......|..+.+-|
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
No 484
>PLN02153 epithiospecifier protein
Probab=90.55 E-value=15 Score=34.40 Aligned_cols=244 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCceEEeeccCC-------ceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcE---EEEEEcCCCCEEEE
Q 009266 9 NNKRARTSVDKA-------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCV---NTVSFNTDGDILIS 78 (538)
Q Consensus 9 ~~~~l~t~~~d~-------~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~~~~s~~g~~l~t 78 (538)
++++.+.|+.+. .+.++|+.+.+.. .....+..... ...+..-.+++++.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~--------------------~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 91 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS--------------------IAPANGDVPRISCLGVRMVAVGTKLYIF 91 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEE--------------------EcCccCCCCCCccCceEEEEECCEEEEE
Q ss_pred ecCC-----CeEEEEECCCCceeeeecc-----CCCCCeEEEEEeecCCCceEEEEeCC-----------CcEEEeeccc
Q 009266 79 GSDD-----RRVILWDWKTERVKLSFHS-----GHNDNVFQAKIMPFTDDRSIVTCAAD-----------GQVRHAQILE 137 (538)
Q Consensus 79 ~~~d-----~~i~iw~~~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~~~l~s~~~d-----------g~v~vwd~~~ 137 (538)
|+.+ ..+.+||+.+.+-...-.. .....-.+++.. ++++++.|+.+ ..|.+||+.+
T Consensus 92 GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~ 168 (341)
T PLN02153 92 GGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD---ENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD 168 (341)
T ss_pred CCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE---CCEEEEECCccCCCccCCCcccceEEEEECCC
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-------------CcEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
..............+-.......-+.++++.++.+ ..|.+||+.+.+-...-..... ...
T Consensus 169 ~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~-------P~~ 241 (341)
T PLN02153 169 GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAK-------PSA 241 (341)
T ss_pred CeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCC-------CCC
Q ss_pred eeEEEEEcCCCCcEEEEEeCC--------------CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEc
Q 009266 205 NLNAIAIDPRNANLFAVAGSD--------------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~d--------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 270 (538)
.....+..-. +.+++.|+.. ..|..||+.+.+.... ................++...
T Consensus 242 r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~--------~~~~~~~~pr~~~~~~~~~v~ 312 (341)
T PLN02153 242 RSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL--------GECGEPAMPRGWTAYTTATVY 312 (341)
T ss_pred cceeeeEEEC-CEEEEECcccCCccccccccccccccEEEEEcCccEEEec--------cCCCCCCCCCccccccccccC
Q ss_pred CCCCEEEEEcC-------CeEEEeeccC
Q 009266 271 DQSELLVSYND-------EFIYLFTQDM 291 (538)
Q Consensus 271 ~~~~~l~~~~~-------~~i~~~d~~~ 291 (538)
.++++++.++. +.++.|++..
T Consensus 313 ~~~~~~~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 313 GKNGLLMHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred CcceEEEEcCcCCCCccccceEEEeccc
No 485
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.54 E-value=23 Score=37.47 Aligned_cols=182 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred ceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC--CCCEEEEecC-----------CCeEEE
Q 009266 21 LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSD-----------DRRVIL 87 (538)
Q Consensus 21 ~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~t~~~-----------d~~i~i 87 (538)
.|++.|..+|+.+ ..+.+.+. ...-.|..+.|+. ...+++.|.. +|.++.
T Consensus 854 ~I~~~d~~s~~~~---------------~~~~l~~n--e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~yt 916 (1205)
T KOG1898|consen 854 SIRVFDPKSGKII---------------CLVELGQN--EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYT 916 (1205)
T ss_pred eEEEEcCCCCceE---------------EEEeecCC--cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEE
Q ss_pred EECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEE
Q 009266 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (538)
|++-.......++....-+-.-++..| -..++++|-. ..+++|++...+.+.+..++..+..|+.+.+.. ..++
T Consensus 917 yk~~~~g~~lellh~T~~~~~v~Ai~~--f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~---~RI~ 990 (1205)
T KOG1898|consen 917 YKFVRNGDKLELLHKTEIPGPVGAICP--FQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG---ARIV 990 (1205)
T ss_pred EEEEecCceeeeeeccCCCccceEEec--cCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEeecc---eEEE
Q ss_pred EEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
+|...-.|.++-.+........-.-.. .+..|+++.+-.. ..+|.+..=|.+.+..+.
T Consensus 991 VgD~qeSV~~~~y~~~~n~l~~fadD~-------~pR~Vt~~~~lD~--~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 991 VGDIQESVHFVRYRREDNQLIVFADDP-------VPRHVTALELLDY--DTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EeeccceEEEEEEecCCCeEEEEeCCC-------ccceeeEEEEecC--CceeeccccCcEEEEECC
No 486
>PLN02193 nitrile-specifier protein
Probab=90.38 E-value=20 Score=35.44 Aligned_cols=202 Identities=8% Similarity=-0.033 Sum_probs=0.0
Q ss_pred CCceEEeeccC-----CceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 9 NNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 9 ~~~~l~t~~~d-----~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
++++.+.|+.+ ..+.++|+.+.+.. ++...-......-.+.+..-++++.+.|+.++
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~------------------~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~ 289 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWK------------------LLTPVEEGPTPRSFHSMAADEENVYVFGGVSA 289 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEE------------------EcCcCCCCCCCccceEEEEECCEEEEECCCCC
Q ss_pred e-----EEEEECCCCceeeeec---cCCCCCeEEEEEeecCCCceEEEEeCC----CcEEEeecccCceeeeeeccccCC
Q 009266 84 R-----VILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQG 151 (538)
Q Consensus 84 ~-----i~iw~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~ 151 (538)
. +..||+.+.+-...-. ......-..++.. ++++++.++.+ ..|.++|+.+.+............
T Consensus 290 ~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~ 366 (470)
T PLN02193 290 TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPS 366 (470)
T ss_pred CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE---CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCC
Q ss_pred CcEEEEEcCCCCcEEEEEcCCC--------------cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDG--------------LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
+-...+...-+.++++.|+... .+.+||+.+.+-............+................ ..
T Consensus 367 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~-~~ 445 (470)
T PLN02193 367 ERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGK-KG 445 (470)
T ss_pred CcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCC-ce
Q ss_pred EEEEEeCCCeEEEEE
Q 009266 218 LFAVAGSDEYTRLYD 232 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd 232 (538)
+++.|+....=..++
T Consensus 446 ~~~fGG~~~~~~~~~ 460 (470)
T PLN02193 446 LVMHGGKAPTNDRFD 460 (470)
T ss_pred EEEEcCCCCcccccc
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.98 E-value=10 Score=36.86 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEEC-------CCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDW-------KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
.....+..|...|..+++. +..+.||+. ..+.....+..++...+.+|..-. ...|.|+.|
T Consensus 26 ~~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v~lv~----------p~~G~v~f~ 93 (422)
T PF08801_consen 26 QSPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGVGLVK----------PKTGRVVFW 93 (422)
T ss_dssp TTS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SEEEEE-----------TT-EEEEE
T ss_pred ccceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceEEEEE----------cCCCCEEec
Q ss_pred ecccCceeeeeecc----------ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCC-------
Q 009266 134 QILERGGVETKLLG----------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD------- 196 (538)
Q Consensus 134 d~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------- 196 (538)
+--+.......... -...........-.. .-++.+...|+|...-.+....+..+.......
T Consensus 94 ~~I~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~-~~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~ 172 (422)
T PF08801_consen 94 ESISHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEP-SGFIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINH 172 (422)
T ss_dssp S-TT-TT--EEEE------------------EEEEEEET-TTEEEEETT--EEEEEE-TTS-EEEEE-TT----------
T ss_pred ccchhhhhcCccccccccccceeeecCCceEEECCCCce-EEEEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCcccccc
Q ss_pred ---------CCC-cceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 009266 197 ---------RRN-YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 197 ---------~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 233 (538)
.+. ......|.+++..+. .+++++.+.+|.|.+|++
T Consensus 173 ~~~~~~~~~~p~~~~~~~~I~~v~~d~~-r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 173 TSSSIFSSLLPSFSDPRPKIVQVAVDPS-RRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp -------------------EEEEEEETT-TTEEEEEESSE-EEEEEE
T ss_pred ccCceeccccCCcccchhceeeEEecCC-cCEEEEEeCCCcEEEEEE
No 488
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=89.84 E-value=0.54 Score=43.58 Aligned_cols=73 Identities=19% Similarity=0.341 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCC
Q 009266 463 DDDDFDDDDDDDGGGGGSGGGGDVDSDDDEEDDDDDNIDDNVDNDNDDESNEEAISYSDFDDYDVDLDVDDGV 535 (538)
Q Consensus 463 ~~~~~~~d~~~~~~~~~~~~~~~~~~ddd~ddd~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (538)
+++-.++.++++.+++....+++++.-.++.+-.|.-+.++.+--+++.++.+.+.-+..+++..|+.+.+-|
T Consensus 224 ~d~~~ed~de~d~~d~~p~~~e~~e~g~eE~egsd~~~~deae~t~~e~eege~daaea~~d~~sde~de~~e 296 (620)
T COG4547 224 DDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTE 296 (620)
T ss_pred CCcCCCCccccccccCCCCCCcccccccccccccccCccchhhcccccccccccchhcCCccccccccccCcc
No 489
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.70 E-value=17 Score=33.72 Aligned_cols=189 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCceEEeeccC-----CceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC--
Q 009266 9 NNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-- 81 (538)
Q Consensus 9 ~~~~l~t~~~d-----~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~-- 81 (538)
++.+.+.|+.+ ..+..+++.+.+.. ..+.....+........++.+. +++.+.|+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~---------------~~~~~~~~lp~~~~~~~~~~~~--~~iYv~GG~~~ 134 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEE---------------LICETIGNLPFTFENGSACYKD--GTLYVGGGNRN 134 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCcee---------------eeeeEcCCCCcCccCceEEEEC--CEEEEEeCcCC
Q ss_pred ---CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC----CcEEEeecccCceeeeeec---cccCC
Q 009266 82 ---DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLL---GKHQG 151 (538)
Q Consensus 82 ---d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~---~~~~~ 151 (538)
...+..||+.+.+-...-...........+... ++++.+.|+.+ ..+.+||+.+.+....... .....
T Consensus 135 ~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 135 GKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKL--QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPIS 212 (323)
T ss_pred CccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEE--CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCcee
Q ss_pred CcEEEEEcCCCCcEEEEEcCC-------------------------------------CcEEEEecCCCCeeeeeeeccc
Q 009266 152 RAHKLAIEPGSPHVFYTCGED-------------------------------------GLVQHFDLRTGAATELFTCRPI 194 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~d-------------------------------------g~i~iwd~~~~~~~~~~~~~~~ 194 (538)
......+...+.++++.|+.+ ..|.+||+.+.+-...-..+..
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 292 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF 292 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc
Q ss_pred CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC
Q 009266 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (538)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 226 (538)
.......+.+. +.+++.|+...
T Consensus 293 -------~r~~~~~~~~~---~~iyv~GG~~~ 314 (323)
T TIGR03548 293 -------ARCGAALLLTG---NNIFSINGELK 314 (323)
T ss_pred -------ccCchheEEEC---CEEEEEecccc
No 490
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.67 E-value=19 Score=34.26 Aligned_cols=245 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCCC--CCeEEEEEeecCCCceEEEEeCCC-----------cEEEeecccCcee
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVTCAADG-----------QVRHAQILERGGV 141 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~l~s~~~dg-----------~v~vwd~~~~~~~ 141 (538)
+++.|.....+.++++.........+..-. .........- ++.+.+.|+... .+..||..+....
T Consensus 42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~ 119 (376)
T PRK14131 42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI--DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQ 119 (376)
T ss_pred EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEE
Q ss_pred eeeeccccCCCcEEEEEcCCCCcEEEEEcCC---------------------------------------CcEEEEecCC
Q 009266 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---------------------------------------GLVQHFDLRT 182 (538)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------------------------------------g~i~iwd~~~ 182 (538)
...........-.+++..-++ ++++.|+.. ..|.+||..+
T Consensus 120 ~~~~~~p~~~~~~~~~~~~~~-~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t 198 (376)
T PRK14131 120 KLDTRSPVGLAGHVAVSLHNG-KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPST 198 (376)
T ss_pred eCCCCCCCcccceEEEEeeCC-EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCC
Q ss_pred CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC----CeEEEE----EcCCccccCCCCCCCCCcccCCC
Q 009266 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLY----DIRKYKWDGSTDFGQPADYFCPP 254 (538)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~iw----d~~~~~~~~~~~~~~~~~~~~~~ 254 (538)
.+-...-..+.. .....+....++++++.|+.. .+..+| +..+.++.....+ ...
T Consensus 199 ~~W~~~~~~p~~----------~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-------p~~ 261 (376)
T PRK14131 199 NQWKNAGESPFL----------GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL-------PPA 261 (376)
T ss_pred CeeeECCcCCCC----------CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC-------CCC
Q ss_pred CccCCCccceEEEEEcCCCCEEEEEcCC-----------------------eEEEeeccCCCCCCCCCCCCccccccccc
Q 009266 255 NLIGDEQVGITGLAFSDQSELLVSYNDE-----------------------FIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (538)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~-----------------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (538)
.....+.......+...++++++.|+.+ .+.+|++.+.+
T Consensus 262 ~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~------------------ 323 (376)
T PRK14131 262 PGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK------------------ 323 (376)
T ss_pred CcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc------------------
Q ss_pred cCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCC------eEEEeeccCcceeEE
Q 009266 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG------RIFIWKKKGGELIRV 380 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg------~i~iwd~~~~~~~~~ 380 (538)
...+..+...... ...+.+ +++++++|+... .|..+....++.+.+
T Consensus 324 ------------------W~~~~~lp~~r~~--~~av~~---~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~~ 375 (376)
T PRK14131 324 ------------------WQKVGELPQGLAY--GVSVSW---NNGVLLIGGETAGGKAVSDVTLLSWDGKKLTVE 375 (376)
T ss_pred ------------------ccccCcCCCCccc--eEEEEe---CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEEe
No 491
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.65 E-value=21 Score=34.65 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
+..........+...-...+.|+|.|++ .+|++--..|.|++++..++...............+ ...+..|+|+|+
T Consensus 14 ~~~p~~f~~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~g---e~GLlglal~Pd 89 (454)
T TIGR03606 14 KAASENFDKKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQ---HNGLLGLALHPD 89 (454)
T ss_pred ccCCCCcEEEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCC---CCceeeEEECCC
Q ss_pred C-----CcEEEEEe----------CCCeEEEEEcC--CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEE
Q 009266 215 N-----ANLFAVAG----------SDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (538)
Q Consensus 215 ~-----~~~l~~~~----------~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 277 (538)
= ..+|.+.. ....|.-|.+. ...+.....+ +..........-..|+|.|+|++++
T Consensus 90 F~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~I--------l~~lP~~~~H~GgrI~FgPDG~LYV 161 (454)
T TIGR03606 90 FMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDL--------LAGLPAGNDHNGGRLVFGPDGKIYY 161 (454)
T ss_pred ccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEE--------EecCCCCCCcCCceEEECCCCcEEE
Q ss_pred EEcCCeE-------------------------------EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 009266 278 SYNDEFI-------------------------------YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (538)
Q Consensus 278 ~~~~~~i-------------------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
+.++..- +|+.+...-....
T Consensus 162 s~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~----------------------------- 212 (454)
T TIGR03606 162 TIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPK----------------------------- 212 (454)
T ss_pred EECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCC-----------------------------
Q ss_pred CCcccCC-------ceeeccccceeeeEEEEecCCCcEEEE
Q 009266 327 TDVRIAP-------QVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (538)
Q Consensus 327 ~~~~~~~-------~~~~~~~~~~~i~~v~~~s~~~~~l~~ 360 (538)
..+. .--.+|++ ...++| +|+|++.++
T Consensus 213 ---dNPf~~g~~~eIyA~G~RN---p~Gla~-dp~G~Lw~~ 246 (454)
T TIGR03606 213 ---DNPSINGVVSHIFTYGHRN---PQGLAF-TPDGTLYAS 246 (454)
T ss_pred ---CCCccCCCcceEEEEeccc---cceeEE-CCCCCEEEE
No 492
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=89.63 E-value=0.43 Score=49.99 Aligned_cols=67 Identities=33% Similarity=0.462 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------CCCCCchhhccCCCCCCCCCCCCCCCC
Q 009266 471 DDDDGGGGGSGGGGDVDSDDDEEDDDDDNIDDNVDND----------------NDDESNEEAISYSDFDDYDVDLDVDDG 534 (538)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~ddd~ddd~d~~~~~~~~~d----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (538)
++-+.+++..-...++-+..+.++.+++.+++++++| |+++|+|...+.+++++.+++.+++++
T Consensus 1313 dd~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ddddas~~k~~~k~~~~~dYe~~de~e~~~~~~~e~~~~~e~~e~d~ 1392 (1640)
T KOG0262|consen 1313 DDADPDDGNEVDNNDEVGGEDNEDSDDESEDDEDDDDASDAKLHKKTEEEADYESEDEDERVEEREDEGDEDEESDEDDE 1392 (1640)
T ss_pred ccCCccccccCCccccccCCccccccccccccCcccchhHHHHhhhhccccCcCCCchhhhhhhhhcccccccccccchh
Q ss_pred CCC
Q 009266 535 VDG 537 (538)
Q Consensus 535 ~~~ 537 (538)
|.|
T Consensus 1393 e~g 1395 (1640)
T KOG0262|consen 1393 EVG 1395 (1640)
T ss_pred hcc
No 493
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.52 E-value=18 Score=35.79 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCCEEEEe---cCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeecc
Q 009266 71 TDGDILISG---SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG 147 (538)
Q Consensus 71 ~~g~~l~t~---~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 147 (538)
.+|-++++. ...+.+.+.| ..|.....+ .........+...+ +|.+++... ..++.+|+. ++.+....+.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~-~~~~~~~~~~~~l~--nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~ 185 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYL-PLDSGSDNSFKQLP--NGNLLIGSG--NRLYEIDLL-GKVIWEYDLP 185 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE--GGGT--SSEEE-T--TS-EEEEEB--TEEEEE-TT---EEEEEE--
T ss_pred CCcEEEEeCCCCCCCceEEEEC-CCccEEEEE-ccCccccceeeEcC--CCCEEEecC--CceEEEcCC-CCEEEeeecC
Q ss_pred ccC-CCcEEEEEcCCCCcEEEEEc--------------CCCcEEEEecCCCCeeeeeeecccCCCCCc------------
Q 009266 148 KHQ-GRAHKLAIEPGSPHVFYTCG--------------EDGLVQHFDLRTGAATELFTCRPIDDRRNY------------ 200 (538)
Q Consensus 148 ~~~-~~v~~~~~~~~~~~~l~s~~--------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------ 200 (538)
... ..=..+...|+| ++|+.+. .|. |..+| .+|+.+..+...........
T Consensus 186 ~~~~~~HHD~~~l~nG-n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~ 262 (477)
T PF05935_consen 186 GGYYDFHHDIDELPNG-NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDIS 262 (477)
T ss_dssp TTEE-B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred CcccccccccEECCCC-CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccc
Q ss_pred --------ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccc
Q 009266 201 --------MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (538)
Q Consensus 201 --------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 238 (538)
.| ++++.+.+.+..+|+++-.-..|...+.+++++
T Consensus 263 ~~~~~~DW~H---~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 263 GSGGGRDWLH---INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp -SSTTSBS-----EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred cCCCCCCccc---cCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
No 494
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.51 E-value=25 Score=35.64 Aligned_cols=178 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEEC--CCCceeeeeccCCCCCeEEEEEeecCCCc--------eEEEE--eCCC
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDR--------SIVTC--AADG 128 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--------~l~s~--~~dg 128 (538)
...|-.+.|.++++.+++.-..|.|.+|+. ...+.+..+...+...+.--+|-+ +.. ++++. +..-
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~--~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVN--DFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhc--ccccccCCceEEEEEEcCCCcE
Q ss_pred cEEEeec--ccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee
Q 009266 129 QVRHAQI--LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (538)
Q Consensus 129 ~v~vwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (538)
..+++.+ .............+........|.-..+.+..- .+++|.+|.+..-+...++.......... ...|
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~---~~~v 281 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKES---DDLV 281 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcccc---ccce
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCc
Q 009266 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (538)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 249 (538)
.-.+.+|+ +.|++ .+.+|++.|+.-..+........+..
T Consensus 282 Sl~~~s~n--RvLLs--~~nkIyLld~~~~siLse~~~s~~~~ 320 (670)
T PF10395_consen 282 SLKPPSPN--RVLLS--VNNKIYLLDLKFESILSEFELSHPKP 320 (670)
T ss_pred EeecCCCC--eEEEE--cCCEEEEEeehhhhhhhhhhccCCcc
No 495
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=89.49 E-value=0.34 Score=47.65 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCC
Q 009266 463 DDDDFDDDDDDDGGGGGSGGGGDVDSDDDEEDDDDDNIDDNVDNDNDDESNEEAISYSDFDDYDVDLDVDDGVD 536 (538)
Q Consensus 463 ~~~~~~~d~~~~~~~~~~~~~~~~~~ddd~ddd~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (538)
..++.+-++....+.++.++.+.++++..++.++-...+.++++++.+..++++..+++..++|.--..+.+..
T Consensus 202 ~~~eqe~dd~~m~~~Ee~e~e~~e~~e~~~~~~~sgs~~~~e~e~e~~~~de~~e~~~~~~d~d~i~E~~~~~i 275 (822)
T KOG2141|consen 202 EKEEQELDDDGMEGEEEFEDEESEDSESGDEEDDSGSEDEDESEDEKDSVDEEEESEEDNEDDDGISEISNSEI 275 (822)
T ss_pred hhhhhhhhccCCccccccccccccccccccccccccCcccchhhhhccchhhhhhhhhcccCCccccccccccc
No 496
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.48 E-value=20 Score=38.96 Aligned_cols=240 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccC
Q 009266 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~ 138 (538)
|-......++|+|...++|.+...|.|++|-...-+............+..+.+-. ....+........+.+|.....
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~--~~s~~~~l~~~~~~~~~~~~~~ 110 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV--GISRNLVLSDDDSLHLWSIKIK 110 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee--cccccceeecccceeeeccccc
Q ss_pred ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
..+. +...+++....+-- .+ +-+ ..+.+++|+..-............ ....+.....++. ..
T Consensus 111 ~~~~------~~~~~~~~~~~~~~-~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~--~~ 172 (993)
T KOG1983|consen 111 TGVF------LKQEITSFVTDPPP-DW-LIG-ENGLVKVSDVLRHQLSDLKYAGTE-------SSNFVPYESLSPT--LS 172 (993)
T ss_pred ceee------cCCcceeccCCCCc-ch-hcc-cCceeeEeeechhhhccceecccc-------ccccceeeeeccc--ee
Q ss_pred EEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCC
Q 009266 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (538)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~ 298 (538)
+..--.+-.-.+|.+.. ++ ....-+...+.+..+......+..+..+.+.+|+.........+
T Consensus 173 ~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (993)
T KOG1983|consen 173 IEGLVIDLDTVLISLPD----------------AY-LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAY 235 (993)
T ss_pred eeccccccccceeeccc----------------cc-ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhc
Q ss_pred CCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCccee
Q 009266 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (538)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~ 378 (538)
. +..... ++++..++++..||.+.+|+...++.
T Consensus 236 ~---------------------------------------------~~~~~~-~~~~~~~v~~h~Dgs~~fWd~s~g~~- 268 (993)
T KOG1983|consen 236 L---------------------------------------------PNGQLE-SRDGSHFVSYHTDGSYAFWDVSSGKL- 268 (993)
T ss_pred c---------------------------------------------cccccC-ccCCceEEEEEecCCEEeeecCCCce-
Q ss_pred EEee
Q 009266 379 RVIE 382 (538)
Q Consensus 379 ~~~~ 382 (538)
..+.
T Consensus 269 ~~~~ 272 (993)
T KOG1983|consen 269 QIAR 272 (993)
T ss_pred eecC
No 497
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=89.48 E-value=0.35 Score=49.33 Aligned_cols=76 Identities=28% Similarity=0.395 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCC
Q 009266 453 IYGEGNDDDDDDDDFDDDDDDDGGGGGSGGGGDVDSDDDEEDDDDDNIDDNVDNDNDDESNEEAISYSDFDDYDVD 528 (538)
Q Consensus 453 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ddd~ddd~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 528 (538)
...+++.++++.++++++++.+....++...+--..+-+.||+.++++++++++++...-.+.++.+.+-.+...+
T Consensus 35 ~~~~de~D~~e~~e~~~dd~~~~~~k~~s~~gf~~~e~dvDdeveddd~~~edEed~~~~~~ie~~e~~~~d~~~~ 110 (1024)
T KOG1999|consen 35 EDTEDEGDEEEYDEDRKDDEPDEKDKKESGGGFIDREADVDDEVEDDDDDEEDEEDIELHNDIEESEEDLPDERGD 110 (1024)
T ss_pred ccccccccchhhcccccCcchhhhccccccccccccccccccccccccchhccCcchhhcccchhccccccccccc
No 498
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=89.42 E-value=0.27 Score=53.14 Aligned_cols=46 Identities=37% Similarity=0.445 Sum_probs=0.0
Q ss_pred CCCC---------CCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCC
Q 009266 491 DEED---------DDDDNIDDNVDNDNDDESNEEAISYSDFDDYDVDLDVDDGVD 536 (538)
Q Consensus 491 d~dd---------d~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (538)
+++| |+|+++++++|+|++++++++..+++-..=+|+++.+..+||
T Consensus 141 ~eed~~~~~~~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~de~~~~~~ge~ 195 (2849)
T PTZ00415 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195 (2849)
T ss_pred chhhcCcccccccCCccccccccccccccccccccccccccCCCchhccCCCCcc
No 499
>PHA02608 67 prohead core protein; Provisional
Probab=89.33 E-value=0.27 Score=32.60 Aligned_cols=35 Identities=46% Similarity=0.802 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCch
Q 009266 480 SGGGGDVDSDDDEEDDDDDNIDDNVDNDNDDESNE 514 (538)
Q Consensus 480 ~~~~~~~~~ddd~ddd~d~~~~~~~~~d~~~~~~~ 514 (538)
.++..++++++++++++++.++.+++++++++++|
T Consensus 46 EGEe~ed~ddd~~~d~~~~~~~k~~dd~~dDedDE 80 (80)
T PHA02608 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80 (80)
T ss_pred cCCCCccccchhhhhhhcccccccccccccccccC
No 500
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=89.24 E-value=0.68 Score=42.96 Aligned_cols=74 Identities=24% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCC
Q 009266 457 GNDDDDDDDDFDDDDDDDGGGGGSGGGGDVDSDDDEEDDDDDNIDDNVDNDNDDESNEEAISYSDFDDYDVDLD 530 (538)
Q Consensus 457 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ddd~ddd~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 530 (538)
.+++..++.++++.+|+..+..+.++.+.++++-.+.-..|+.+-.+++..+.+.+.-+..+++..++.|++.+
T Consensus 223 ~~d~~~ed~de~d~~d~~p~~~e~~e~g~eE~egsd~~~~deae~t~~e~eege~daaea~~d~~sde~de~~e 296 (620)
T COG4547 223 GDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTE 296 (620)
T ss_pred CCCcCCCCccccccccCCCCCCcccccccccccccccCccchhhcccccccccccchhcCCccccccccccCcc
Done!