Query 009266
Match_columns 538
No_of_seqs 867 out of 3347
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 22:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.3E-51 7.7E-56 414.7 42.1 421 5-452 66-609 (611)
2 1nr0_A Actin interacting prote 100.0 1.8E-50 6E-55 408.2 41.7 409 5-452 25-565 (611)
3 1vyh_C Platelet-activating fac 100.0 8E-49 2.7E-53 376.3 37.3 290 53-415 100-410 (410)
4 2ymu_A WD-40 repeat protein; u 100.0 4.5E-48 1.5E-52 390.1 44.1 366 5-450 187-576 (577)
5 1got_B GT-beta; complex (GTP-b 100.0 1.3E-47 4.5E-52 358.7 39.8 294 50-413 44-340 (340)
6 3ow8_A WD repeat-containing pr 100.0 9.6E-48 3.3E-52 355.8 36.9 289 54-414 25-319 (321)
7 2ynn_A Coatomer subunit beta'; 100.0 2E-47 6.9E-52 351.6 37.5 294 51-416 3-302 (304)
8 3iz6_a 40S ribosomal protein R 100.0 6.2E-48 2.1E-52 366.7 33.9 306 52-418 57-377 (380)
9 4g56_B MGC81050 protein; prote 100.0 1.8E-47 6.3E-52 359.5 34.8 292 57-417 38-344 (357)
10 2ymu_A WD-40 repeat protein; u 100.0 8.4E-47 2.9E-51 380.8 41.6 385 5-451 23-495 (577)
11 2pbi_B Guanine nucleotide-bind 100.0 9.5E-47 3.2E-51 354.5 38.6 295 51-413 54-354 (354)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-46 8E-51 350.8 36.9 319 51-419 5-338 (345)
13 4ery_A WD repeat-containing pr 100.0 7.6E-46 2.6E-50 343.2 39.4 296 51-415 13-311 (312)
14 4gqb_B Methylosome protein 50; 100.0 5.9E-46 2E-50 346.1 34.6 294 4-419 36-334 (344)
15 2pm9_A Protein WEB1, protein t 100.0 6.8E-46 2.3E-50 358.5 33.0 333 4-417 18-415 (416)
16 3frx_A Guanine nucleotide-bind 100.0 5.3E-45 1.8E-49 337.7 36.1 293 50-417 6-318 (319)
17 1erj_A Transcriptional repress 100.0 1.4E-44 4.6E-49 345.3 39.1 308 53-416 57-389 (393)
18 1vyh_C Platelet-activating fac 100.0 3.8E-45 1.3E-49 350.8 35.0 275 5-372 115-409 (410)
19 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-44 3.6E-49 378.6 39.6 413 5-452 24-659 (902)
20 2xzm_R RACK1; ribosome, transl 100.0 2.7E-44 9.1E-49 336.9 37.9 297 49-417 9-341 (343)
21 1r5m_A SIR4-interacting protei 100.0 2.8E-44 9.7E-49 348.2 38.6 324 5-415 52-424 (425)
22 3ow8_A WD repeat-containing pr 100.0 2.3E-44 8E-49 333.1 35.0 272 9-372 47-319 (321)
23 1pgu_A Actin interacting prote 100.0 5.8E-44 2E-48 363.1 38.2 394 4-452 24-612 (615)
24 3sfz_A APAF-1, apoptotic pepti 100.0 8.5E-44 2.9E-48 390.1 41.1 400 5-452 622-1072(1249)
25 1got_B GT-beta; complex (GTP-b 100.0 2.3E-43 7.8E-48 330.0 37.1 274 6-371 63-340 (340)
26 2hes_X YDR267CP; beta-propelle 100.0 1.4E-43 4.9E-48 329.7 34.9 302 52-416 5-328 (330)
27 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-43 6.5E-48 387.3 41.4 419 5-452 664-1247(1249)
28 3frx_A Guanine nucleotide-bind 100.0 1.5E-43 5.1E-48 327.9 34.0 290 4-375 24-318 (319)
29 1gxr_A ESG1, transducin-like e 100.0 4.2E-43 1.4E-47 328.9 37.3 315 5-414 16-335 (337)
30 3vl1_A 26S proteasome regulato 100.0 2.4E-43 8.2E-48 341.0 35.1 329 5-416 63-419 (420)
31 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.9E-43 2E-47 327.8 35.9 312 6-382 24-343 (345)
32 4g56_B MGC81050 protein; prote 100.0 1.5E-43 5.1E-48 332.9 30.8 286 4-376 48-345 (357)
33 2xzm_R RACK1; ribosome, transl 100.0 1.8E-42 6.2E-47 324.5 37.6 297 6-376 35-342 (343)
34 4aow_A Guanine nucleotide-bind 100.0 3.4E-42 1.1E-46 323.1 38.0 296 51-418 28-339 (340)
35 2ynn_A Coatomer subunit beta'; 100.0 1.6E-42 5.6E-47 318.8 34.6 279 5-374 20-302 (304)
36 4gqb_B Methylosome protein 50; 100.0 5.1E-43 1.7E-47 326.3 30.7 285 58-452 27-329 (344)
37 1r5m_A SIR4-interacting protei 100.0 2.7E-42 9.2E-47 334.3 35.7 329 58-451 42-422 (425)
38 2pbi_B Guanine nucleotide-bind 100.0 3.8E-42 1.3E-46 323.1 35.4 276 5-371 71-354 (354)
39 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-43 4.9E-48 346.1 26.7 323 7-417 170-518 (524)
40 2pm9_A Protein WEB1, protein t 100.0 9.1E-43 3.1E-47 336.6 31.2 332 61-452 12-412 (416)
41 1sq9_A Antiviral protein SKI8; 100.0 6.5E-42 2.2E-46 328.4 34.3 298 51-417 6-396 (397)
42 2oaj_A Protein SNI1; WD40 repe 100.0 4.3E-42 1.5E-46 358.9 35.2 381 6-419 66-667 (902)
43 1pgu_A Actin interacting prote 100.0 2.7E-41 9.2E-46 343.5 39.9 348 6-416 72-614 (615)
44 3iz6_a 40S ribosomal protein R 100.0 2.4E-42 8.1E-47 328.2 29.4 292 6-376 74-377 (380)
45 4e54_B DNA damage-binding prot 100.0 4.9E-42 1.7E-46 332.4 32.1 319 52-420 110-434 (435)
46 3zwl_B Eukaryotic translation 100.0 6.8E-41 2.3E-45 318.0 37.5 302 53-419 24-349 (369)
47 3dm0_A Maltose-binding peripla 100.0 2.2E-41 7.5E-46 347.6 36.2 294 52-415 373-692 (694)
48 3i2n_A WD repeat-containing pr 100.0 2.9E-41 9.8E-46 319.1 33.0 301 54-418 11-355 (357)
49 3ei3_B DNA damage-binding prot 100.0 1.2E-40 4.2E-45 317.7 37.4 314 51-416 63-382 (383)
50 3mkq_A Coatomer beta'-subunit; 100.0 3E-41 1E-45 354.4 36.3 378 5-451 20-457 (814)
51 3gre_A Serine/threonine-protei 100.0 1.5E-41 5.1E-46 330.1 29.5 336 6-413 35-437 (437)
52 3odt_A Protein DOA1; ubiquitin 100.0 2.6E-40 9E-45 306.4 36.4 294 51-422 8-302 (313)
53 4a11_B DNA excision repair pro 100.0 2.1E-40 7.1E-45 319.2 36.9 363 18-451 21-402 (408)
54 4ery_A WD repeat-containing pr 100.0 3.5E-40 1.2E-44 305.1 36.7 276 5-373 30-311 (312)
55 1k8k_C P40, ARP2/3 complex 41 100.0 9.3E-41 3.2E-45 317.5 32.1 309 57-418 4-363 (372)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.3E-40 1.8E-44 319.7 38.0 305 7-417 126-443 (445)
57 1erj_A Transcriptional repress 100.0 3.2E-40 1.1E-44 315.1 35.0 312 5-375 71-390 (393)
58 2hes_X YDR267CP; beta-propelle 100.0 3.1E-40 1E-44 307.3 32.8 285 12-374 26-328 (330)
59 3v7d_B Cell division control p 100.0 1.3E-39 4.4E-44 319.0 38.0 307 8-413 130-460 (464)
60 3k26_A Polycomb protein EED; W 100.0 1.6E-40 5.3E-45 315.1 30.4 319 55-415 12-365 (366)
61 1gxr_A ESG1, transducin-like e 100.0 4E-40 1.4E-44 308.6 32.6 319 60-452 8-335 (337)
62 4aow_A Guanine nucleotide-bind 100.0 9E-40 3.1E-44 306.6 34.4 295 3-376 44-339 (340)
63 3dm0_A Maltose-binding peripla 100.0 2E-39 6.8E-44 333.1 37.4 302 4-373 389-692 (694)
64 2pm7_B Protein transport prote 100.0 1.5E-39 5.2E-44 297.9 32.4 269 54-416 2-285 (297)
65 3dwl_C Actin-related protein 2 100.0 1.9E-40 6.4E-45 315.9 25.9 305 57-414 7-377 (377)
66 3dw8_B Serine/threonine-protei 100.0 9.8E-39 3.3E-43 311.4 37.5 297 59-414 26-444 (447)
67 3v7d_B Cell division control p 100.0 1E-38 3.4E-43 312.7 36.7 324 53-450 113-459 (464)
68 3mkq_A Coatomer beta'-subunit; 100.0 6.3E-39 2.2E-43 336.7 37.3 298 50-418 2-304 (814)
69 4h5i_A Guanine nucleotide-exch 100.0 2.9E-40 9.8E-45 311.3 24.2 289 61-417 14-344 (365)
70 3vl1_A 26S proteasome regulato 100.0 2.1E-39 7.2E-44 313.4 30.6 329 63-451 58-416 (420)
71 1yfq_A Cell cycle arrest prote 100.0 1.2E-38 3.9E-43 299.3 32.7 290 55-414 5-322 (342)
72 4gga_A P55CDC, cell division c 100.0 7.6E-38 2.6E-42 301.7 38.7 284 63-419 107-398 (420)
73 4e54_B DNA damage-binding prot 100.0 2E-39 6.7E-44 314.2 27.7 302 3-378 125-434 (435)
74 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.7E-38 2.3E-42 304.8 38.0 308 52-446 109-430 (445)
75 3mmy_A MRNA export factor; mRN 100.0 1.3E-38 4.5E-43 302.1 31.8 297 51-416 29-346 (368)
76 4gga_A P55CDC, cell division c 100.0 3.6E-38 1.2E-42 303.9 35.1 293 10-393 116-414 (420)
77 3bg1_A Protein SEC13 homolog; 100.0 2.3E-39 7.7E-44 299.5 25.5 274 55-415 7-292 (316)
78 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-38 4.5E-43 302.6 31.5 316 4-377 14-364 (372)
79 4aez_A CDC20, WD repeat-contai 100.0 3.6E-38 1.2E-42 302.1 33.5 287 57-420 87-384 (401)
80 4ggc_A P55CDC, cell division c 100.0 2E-37 6.8E-42 287.7 37.4 282 63-417 27-316 (318)
81 3dwl_C Actin-related protein 2 100.0 4.7E-39 1.6E-43 306.2 26.9 329 3-372 16-377 (377)
82 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-39 7.2E-44 316.7 23.9 324 60-453 132-516 (524)
83 4aez_A CDC20, WD repeat-contai 100.0 1.2E-37 4.1E-42 298.5 35.1 282 9-382 102-388 (401)
84 3i2n_A WD repeat-containing pr 100.0 8.2E-38 2.8E-42 295.3 32.1 302 6-377 26-356 (357)
85 3zwl_B Eukaryotic translation 100.0 1.6E-37 5.4E-42 294.7 33.8 283 5-381 39-353 (369)
86 1sq9_A Antiviral protein SKI8; 100.0 4.6E-38 1.6E-42 301.7 30.3 295 11-376 27-397 (397)
87 4a11_B DNA excision repair pro 100.0 4.8E-37 1.6E-41 295.7 35.6 339 6-415 51-404 (408)
88 3ei3_B DNA damage-binding prot 100.0 3.2E-37 1.1E-41 294.1 32.7 290 6-374 81-382 (383)
89 3f3f_A Nucleoporin SEH1; struc 100.0 4.2E-37 1.5E-41 289.4 31.4 310 54-419 4-340 (351)
90 4ggc_A P55CDC, cell division c 100.0 1.4E-36 4.9E-41 281.9 33.7 279 7-376 34-317 (318)
91 2j04_A TAU60, YPL007P, hypothe 100.0 5E-38 1.7E-42 298.1 21.8 313 3-442 20-349 (588)
92 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-36 5.1E-41 294.2 32.4 282 55-420 127-418 (435)
93 3k26_A Polycomb protein EED; W 100.0 5.5E-37 1.9E-41 290.7 28.2 307 9-373 33-365 (366)
94 2pm7_B Protein transport prote 100.0 3.3E-36 1.1E-40 275.7 31.1 245 5-291 16-285 (297)
95 3jrp_A Fusion protein of prote 100.0 1.5E-36 5.3E-41 289.1 29.9 261 54-417 4-288 (379)
96 3gre_A Serine/threonine-protei 100.0 1.4E-37 5E-42 302.0 23.1 318 68-450 34-436 (437)
97 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-35 3.9E-40 275.2 32.5 274 8-382 27-304 (313)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-36 7E-41 290.2 26.8 283 11-377 48-345 (402)
99 4h5i_A Guanine nucleotide-exch 100.0 2E-36 6.8E-41 285.1 25.5 290 5-375 21-344 (365)
100 3bg1_A Protein SEC13 homolog; 100.0 9.4E-36 3.2E-40 275.2 28.1 198 6-235 21-247 (316)
101 3dw8_B Serine/threonine-protei 100.0 5.3E-35 1.8E-39 285.0 32.3 328 5-372 35-444 (447)
102 1p22_A F-BOX/WD-repeat protein 100.0 4.6E-35 1.6E-39 283.7 31.2 292 8-395 141-434 (435)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-35 3.4E-40 285.5 25.2 292 62-419 35-345 (402)
104 1l0q_A Surface layer protein; 100.0 1E-33 3.5E-38 270.7 38.6 311 11-419 3-345 (391)
105 2xyi_A Probable histone-bindin 100.0 1.4E-34 4.9E-39 279.5 30.7 253 56-417 123-411 (430)
106 1yfq_A Cell cycle arrest prote 100.0 4.2E-34 1.4E-38 268.2 32.3 278 99-446 6-315 (342)
107 3jro_A Fusion protein of prote 100.0 3.7E-35 1.3E-39 302.8 27.3 259 54-417 2-286 (753)
108 3f3f_A Nucleoporin SEH1; struc 100.0 2.5E-34 8.5E-39 270.5 30.7 294 5-382 18-345 (351)
109 2j04_A TAU60, YPL007P, hypothe 100.0 3.1E-35 1.1E-39 279.1 24.3 282 58-415 12-296 (588)
110 3vu4_A KMHSV2; beta-propeller 100.0 3.2E-34 1.1E-38 269.3 30.4 295 54-418 12-338 (355)
111 3bws_A Protein LP49; two-domai 100.0 7.7E-34 2.6E-38 275.5 34.0 287 54-416 116-432 (433)
112 4gq1_A NUP37; propeller, trans 100.0 8.9E-35 3E-39 277.1 25.8 330 4-414 24-387 (393)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.6E-34 3.3E-38 275.6 32.9 310 61-416 4-391 (450)
114 3jrp_A Fusion protein of prote 100.0 1.7E-34 5.9E-39 274.9 26.1 248 5-291 18-287 (379)
115 3lrv_A PRE-mRNA-splicing facto 100.0 3.8E-34 1.3E-38 268.1 26.9 276 68-416 43-333 (343)
116 3mmy_A MRNA export factor; mRN 100.0 3.2E-33 1.1E-37 265.0 31.6 290 88-450 24-342 (368)
117 3jro_A Fusion protein of prote 100.0 4.9E-33 1.7E-37 287.0 28.5 249 5-292 16-286 (753)
118 2w18_A PALB2, fancn, partner a 100.0 2.4E-32 8.1E-37 243.4 28.1 280 12-414 56-355 (356)
119 3lrv_A PRE-mRNA-splicing facto 100.0 3.7E-32 1.3E-36 254.5 30.5 269 8-372 46-331 (343)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.8E-32 1.6E-36 263.7 31.5 315 6-374 12-391 (450)
121 4gq1_A NUP37; propeller, trans 100.0 3.5E-33 1.2E-37 266.1 22.7 253 4-291 95-389 (393)
122 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-31 4.5E-36 251.5 32.1 263 87-418 3-273 (355)
123 1l0q_A Surface layer protein; 100.0 4.6E-31 1.6E-35 252.3 34.4 269 74-419 3-278 (391)
124 1nir_A Nitrite reductase; hemo 100.0 5.8E-31 2E-35 259.5 35.7 335 6-421 145-519 (543)
125 3bws_A Protein LP49; two-domai 100.0 3.7E-31 1.3E-35 256.6 32.9 278 4-374 129-432 (433)
126 2xyi_A Probable histone-bindin 100.0 1.7E-31 5.7E-36 258.0 28.1 263 4-292 135-411 (430)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.8E-30 6.1E-35 248.6 29.4 294 7-398 72-410 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 8.4E-30 2.9E-34 244.0 25.8 298 60-433 61-404 (415)
129 1nir_A Nitrite reductase; hemo 100.0 7.8E-29 2.7E-33 244.3 31.4 308 68-439 144-494 (543)
130 1k32_A Tricorn protease; prote 100.0 6.7E-29 2.3E-33 265.9 33.0 387 11-450 25-498 (1045)
131 2ecf_A Dipeptidyl peptidase IV 100.0 6E-28 2.1E-32 250.4 28.3 339 5-418 43-461 (741)
132 2w18_A PALB2, fancn, partner a 100.0 4.7E-27 1.6E-31 209.4 23.7 207 4-233 117-355 (356)
133 1xfd_A DIP, dipeptidyl aminope 100.0 1.3E-26 4.3E-31 239.9 28.5 313 5-404 23-428 (723)
134 1ri6_A Putative isomerase YBHE 100.0 1.9E-25 6.4E-30 209.3 33.1 309 12-398 7-335 (343)
135 3u4y_A Uncharacterized protein 100.0 2.2E-25 7.7E-30 207.6 32.8 287 5-420 5-308 (331)
136 2ecf_A Dipeptidyl peptidase IV 100.0 1.7E-26 6E-31 239.4 27.9 293 61-416 36-413 (741)
137 2z3z_A Dipeptidyl aminopeptida 99.9 7.1E-26 2.4E-30 233.5 28.9 332 10-418 35-437 (706)
138 1ri6_A Putative isomerase YBHE 99.9 6.9E-26 2.4E-30 212.2 25.6 280 75-415 7-307 (343)
139 2ojh_A Uncharacterized protein 99.9 1.8E-25 6.1E-30 204.7 26.5 257 15-407 17-293 (297)
140 1k32_A Tricorn protease; prote 99.9 8.9E-25 3.1E-29 234.0 33.7 280 54-415 196-501 (1045)
141 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-25 5.1E-30 231.8 26.0 300 62-416 17-393 (723)
142 1pby_B Quinohemoprotein amine 99.9 2.8E-25 9.5E-30 207.6 24.2 279 11-386 2-322 (337)
143 1pby_B Quinohemoprotein amine 99.9 1.5E-24 5E-29 202.6 25.6 270 74-419 2-313 (337)
144 3vgz_A Uncharacterized protein 99.9 1.4E-23 4.6E-28 197.5 31.4 278 60-407 39-335 (353)
145 3hfq_A Uncharacterized protein 99.9 1.7E-23 5.9E-28 196.2 29.9 287 82-420 15-323 (347)
146 2z3z_A Dipeptidyl aminopeptida 99.9 7.8E-24 2.7E-28 218.2 28.7 295 6-395 89-454 (706)
147 3o4h_A Acylamino-acid-releasin 99.9 3.1E-24 1.1E-28 215.8 24.6 273 61-416 21-315 (582)
148 1jmx_B Amine dehydrogenase; ox 99.9 4.2E-23 1.4E-27 193.8 30.3 285 6-384 7-335 (349)
149 1z68_A Fibroblast activation p 99.9 6.6E-24 2.2E-28 219.2 26.1 324 6-419 23-446 (719)
150 3hfq_A Uncharacterized protein 99.9 1E-22 3.5E-27 190.9 30.0 263 59-378 37-323 (347)
151 3vgz_A Uncharacterized protein 99.9 2.7E-22 9.2E-27 188.6 29.9 268 6-365 48-335 (353)
152 1jmx_B Amine dehydrogenase; ox 99.9 9.7E-23 3.3E-27 191.3 26.5 296 66-419 4-328 (349)
153 2ojh_A Uncharacterized protein 99.9 2.1E-22 7.2E-27 184.2 24.6 251 78-444 17-292 (297)
154 3scy_A Hypothetical bacterial 99.9 2.9E-21 9.8E-26 182.0 32.5 301 10-394 13-360 (361)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 5E-22 1.7E-26 190.5 26.7 214 7-237 45-280 (434)
156 3scy_A Hypothetical bacterial 99.9 5.6E-21 1.9E-25 180.0 32.8 303 73-422 13-345 (361)
157 3pe7_A Oligogalacturonate lyas 99.9 6.3E-22 2.2E-26 188.7 26.3 290 55-415 24-381 (388)
158 2oit_A Nucleoporin 214KDA; NH2 99.9 1.9E-21 6.4E-26 186.6 27.5 209 61-292 36-279 (434)
159 3u4y_A Uncharacterized protein 99.9 5.3E-21 1.8E-25 178.0 28.7 241 67-419 3-255 (331)
160 2oiz_A Aromatic amine dehydrog 99.9 4.9E-21 1.7E-25 179.3 28.1 308 6-398 11-360 (361)
161 1z68_A Fibroblast activation p 99.9 3.9E-22 1.3E-26 205.9 22.2 291 66-416 20-391 (719)
162 3o4h_A Acylamino-acid-releasin 99.9 6.6E-22 2.2E-26 198.9 22.1 260 103-445 20-303 (582)
163 4a5s_A Dipeptidyl peptidase 4 99.9 3E-20 1E-24 191.7 29.6 326 6-418 24-451 (740)
164 1jof_A Carboxy-CIS,CIS-muconat 99.9 6.4E-20 2.2E-24 172.8 29.0 262 60-417 38-342 (365)
165 3c5m_A Oligogalacturonate lyas 99.9 8E-20 2.7E-24 174.6 24.2 279 63-419 37-387 (396)
166 4a5s_A Dipeptidyl peptidase 4 99.8 4.7E-20 1.6E-24 190.3 22.1 303 63-430 18-367 (740)
167 1qks_A Cytochrome CD1 nitrite 99.8 6.5E-18 2.2E-22 165.8 36.0 332 9-420 166-542 (567)
168 3pe7_A Oligogalacturonate lyas 99.8 2.6E-19 8.9E-24 170.5 23.8 268 87-427 14-340 (388)
169 2oiz_A Aromatic amine dehydrog 99.8 1.3E-18 4.4E-23 162.8 27.0 269 81-417 29-335 (361)
170 3fvz_A Peptidyl-glycine alpha- 99.8 4.1E-18 1.4E-22 157.8 29.4 263 61-416 23-322 (329)
171 3azo_A Aminopeptidase; POP fam 99.8 8E-19 2.7E-23 179.4 22.4 301 56-422 18-375 (662)
172 2dg1_A DRP35, lactonase; beta 99.8 1.3E-16 4.3E-21 148.4 34.7 274 4-406 11-300 (333)
173 1jof_A Carboxy-CIS,CIS-muconat 99.8 2E-18 6.8E-23 162.5 21.6 246 6-291 47-341 (365)
174 3azo_A Aminopeptidase; POP fam 99.8 1.1E-17 3.8E-22 170.9 26.7 319 8-413 33-408 (662)
175 1q7f_A NHL, brain tumor CG1071 99.8 6.5E-17 2.2E-21 146.8 28.9 246 101-417 26-281 (286)
176 1q7f_A NHL, brain tumor CG1071 99.8 1.2E-16 4E-21 145.1 30.5 248 58-376 26-282 (286)
177 2gop_A Trilobed protease; beta 99.8 2.2E-17 7.5E-22 154.5 25.2 267 62-426 15-340 (347)
178 2z2n_A Virginiamycin B lyase; 99.8 2.2E-15 7.4E-20 137.7 36.0 285 57-417 10-296 (299)
179 3c5m_A Oligogalacturonate lyas 99.8 1.9E-17 6.4E-22 158.1 20.8 269 86-427 13-340 (396)
180 2xdw_A Prolyl endopeptidase; a 99.8 1.9E-16 6.5E-21 162.7 28.9 251 59-418 122-416 (710)
181 1qks_A Cytochrome CD1 nitrite 99.8 5.2E-16 1.8E-20 152.3 30.3 288 71-417 165-478 (567)
182 3dsm_A Uncharacterized protein 99.8 8.5E-16 2.9E-20 141.9 29.0 286 18-393 15-319 (328)
183 2bkl_A Prolyl endopeptidase; m 99.8 1.3E-16 4.3E-21 163.5 25.5 252 59-422 118-403 (695)
184 3sjl_D Methylamine dehydrogena 99.8 1.3E-15 4.5E-20 139.9 28.3 303 6-396 40-384 (386)
185 2gop_A Trilobed protease; beta 99.7 9.9E-16 3.4E-20 143.3 26.4 250 19-386 42-341 (347)
186 3fvz_A Peptidyl-glycine alpha- 99.7 1.2E-15 4.1E-20 141.2 26.1 242 6-291 31-322 (329)
187 3e5z_A Putative gluconolactona 99.7 2.8E-15 9.4E-20 136.7 27.9 245 101-419 24-289 (296)
188 2mad_H Methylamine dehydrogena 99.7 3.5E-14 1.2E-18 132.7 35.8 290 6-381 28-357 (373)
189 3sjl_D Methylamine dehydrogena 99.7 3.8E-15 1.3E-19 136.8 28.1 284 67-419 38-366 (386)
190 3no2_A Uncharacterized protein 99.7 1.8E-15 6.1E-20 135.4 25.4 223 9-281 4-232 (276)
191 3dsm_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 140.9 25.0 265 81-418 15-303 (328)
192 3e5z_A Putative gluconolactona 99.7 3.4E-15 1.2E-19 136.1 27.4 247 55-377 21-289 (296)
193 2qc5_A Streptogramin B lactona 99.7 1.5E-13 5E-18 125.5 34.8 281 58-414 16-298 (300)
194 1rwi_B Serine/threonine-protei 99.7 1.1E-14 3.8E-19 130.8 26.2 241 106-419 25-267 (270)
195 2dg1_A DRP35, lactonase; beta 99.7 4.2E-15 1.4E-19 138.1 23.4 239 105-418 6-265 (333)
196 1rwi_B Serine/threonine-protei 99.7 1.8E-14 6.1E-19 129.4 26.5 241 63-377 25-267 (270)
197 2z2n_A Virginiamycin B lyase; 99.7 2.3E-13 7.9E-18 124.1 33.9 230 7-289 23-253 (299)
198 2mad_H Methylamine dehydrogena 99.7 2E-13 6.7E-18 127.6 33.2 293 68-421 27-355 (373)
199 3c75_H MADH, methylamine dehyd 99.7 5.7E-14 1.9E-18 131.6 27.7 291 7-381 81-409 (426)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 2.7E-13 9.3E-18 124.7 30.7 249 58-416 14-299 (314)
201 3no2_A Uncharacterized protein 99.6 9.7E-14 3.3E-18 124.1 25.5 191 72-293 4-197 (276)
202 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.6E-18 140.4 30.6 239 5-293 131-416 (710)
203 2qc5_A Streptogramin B lactona 99.6 2.3E-12 7.7E-17 117.6 33.7 230 7-289 28-258 (300)
204 1yr2_A Prolyl oligopeptidase; 99.6 7.6E-14 2.6E-18 143.9 25.1 249 59-421 160-446 (741)
205 3c75_H MADH, methylamine dehyd 99.6 2.6E-13 8.8E-18 127.2 25.4 290 71-420 82-406 (426)
206 2qe8_A Uncharacterized protein 99.6 2.4E-13 8.4E-18 126.3 24.3 278 62-414 17-319 (343)
207 2bkl_A Prolyl endopeptidase; m 99.6 7.4E-14 2.5E-18 143.0 22.3 192 5-234 127-348 (695)
208 3g4e_A Regucalcin; six bladed 99.6 2.6E-11 8.8E-16 110.2 32.4 238 57-405 8-261 (297)
209 3hrp_A Uncharacterized protein 99.6 7.5E-12 2.6E-16 118.7 29.8 271 62-372 131-408 (409)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.2E-12 1.8E-16 116.0 26.2 236 8-291 27-299 (314)
211 1mda_H Methylamine dehydrogena 99.5 1.7E-12 5.7E-17 119.7 22.6 293 9-395 30-366 (368)
212 1xip_A Nucleoporin NUP159; bet 99.5 2.3E-13 7.9E-18 125.6 15.6 183 63-280 39-232 (388)
213 1yiq_A Quinohemoprotein alcoho 99.5 4.6E-12 1.6E-16 128.3 26.0 367 10-404 70-537 (689)
214 3hrp_A Uncharacterized protein 99.5 1.3E-11 4.6E-16 116.9 26.1 257 105-414 131-408 (409)
215 3g4e_A Regucalcin; six bladed 99.5 1.1E-11 3.8E-16 112.6 24.4 224 5-280 20-260 (297)
216 3iuj_A Prolyl endopeptidase; h 99.5 6.6E-12 2.3E-16 128.2 25.3 249 58-420 125-409 (693)
217 2ghs_A AGR_C_1268P; regucalcin 99.5 3E-10 1E-14 104.6 33.3 230 62-405 49-291 (326)
218 1mda_H Methylamine dehydrogena 99.5 4.4E-12 1.5E-16 116.9 20.7 276 75-420 34-350 (368)
219 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2.1E-10 7E-15 108.2 31.9 317 10-413 53-375 (376)
220 1kb0_A Quinohemoprotein alcoho 99.5 2E-11 6.9E-16 123.3 26.3 359 10-401 77-535 (677)
221 1yr2_A Prolyl oligopeptidase; 99.4 8.7E-12 3E-16 128.6 23.3 237 5-293 169-443 (741)
222 3dr2_A Exported gluconolactona 99.4 3.8E-11 1.3E-15 109.5 25.0 235 55-365 38-298 (305)
223 3dr2_A Exported gluconolactona 99.4 5.5E-11 1.9E-15 108.5 24.8 235 102-410 42-301 (305)
224 1xip_A Nucleoporin NUP159; bet 99.4 4.5E-12 1.5E-16 117.1 16.6 182 7-221 46-230 (388)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.4 8.4E-10 2.9E-14 104.0 32.1 310 73-450 53-374 (376)
226 3hxj_A Pyrrolo-quinoline quino 99.4 1.9E-11 6.4E-16 113.2 20.3 296 10-417 30-325 (330)
227 2ghs_A AGR_C_1268P; regucalcin 99.4 3.4E-10 1.2E-14 104.1 25.6 220 7-280 58-290 (326)
228 2qe8_A Uncharacterized protein 99.3 6.7E-11 2.3E-15 109.8 18.7 238 105-419 17-281 (343)
229 1yiq_A Quinohemoprotein alcoho 99.3 2.9E-10 9.8E-15 115.2 24.0 330 73-420 70-509 (689)
230 2hz6_A Endoplasmic reticulum t 99.3 4.6E-13 1.6E-17 125.4 2.4 142 72-237 8-151 (369)
231 3iuj_A Prolyl endopeptidase; h 99.3 1.3E-10 4.5E-15 118.6 20.7 234 5-292 135-406 (693)
232 1fwx_A Nitrous oxide reductase 99.3 2.1E-11 7E-16 116.8 13.0 323 13-405 18-407 (595)
233 1npe_A Nidogen, entactin; glyc 99.3 1.3E-08 4.6E-13 90.6 29.1 252 74-398 2-263 (267)
234 4a2l_A BT_4663, two-component 99.2 1.3E-07 4.4E-12 98.4 39.8 301 64-421 175-485 (795)
235 2hz6_A Endoplasmic reticulum t 99.2 2.8E-12 9.5E-17 120.1 4.2 185 9-239 8-196 (369)
236 1kb0_A Quinohemoprotein alcoho 99.2 1.4E-09 4.9E-14 109.9 23.6 327 73-420 77-511 (677)
237 2ece_A 462AA long hypothetical 99.2 1.2E-08 4E-13 94.5 27.3 208 71-291 93-352 (462)
238 1kv9_A Type II quinohemoprotei 99.2 6.7E-09 2.3E-13 104.9 28.3 213 10-239 66-337 (668)
239 2ece_A 462AA long hypothetical 99.2 3.2E-09 1.1E-13 98.2 21.6 251 8-280 93-399 (462)
240 4a2l_A BT_4663, two-component 99.2 7E-07 2.4E-11 92.9 41.1 297 61-420 262-575 (795)
241 3hxj_A Pyrrolo-quinoline quino 99.1 7.7E-10 2.6E-14 102.2 15.6 296 66-451 24-321 (330)
242 2ad6_A Methanol dehydrogenase 99.1 3.1E-08 1.1E-12 97.9 25.3 163 73-242 115-342 (571)
243 1w6s_A Methanol dehydrogenase 99.1 6.4E-08 2.2E-12 95.5 26.6 215 10-241 62-348 (599)
244 2iwa_A Glutamine cyclotransfer 99.1 4E-08 1.4E-12 85.4 21.6 202 7-236 29-238 (266)
245 2fp8_A Strictosidine synthase; 99.1 2.9E-07 9.8E-12 84.4 28.6 104 62-169 19-144 (322)
246 3nol_A Glutamine cyclotransfer 99.0 1.4E-07 4.9E-12 80.8 23.5 218 49-288 29-251 (262)
247 3v9f_A Two-component system se 99.0 1.8E-06 6E-11 89.7 36.7 293 61-421 257-573 (781)
248 1fwx_A Nitrous oxide reductase 99.0 4.1E-09 1.4E-13 101.1 15.3 245 8-293 99-433 (595)
249 2iwa_A Glutamine cyclotransfer 99.0 3.2E-07 1.1E-11 79.8 25.8 224 50-292 8-238 (266)
250 1flg_A Protein (quinoprotein e 99.0 2.4E-07 8.3E-12 91.6 28.2 168 73-242 117-362 (582)
251 3v9f_A Two-component system se 99.0 7.2E-06 2.5E-10 85.1 39.5 294 62-420 211-528 (781)
252 1npe_A Nidogen, entactin; glyc 99.0 4.8E-07 1.6E-11 80.4 26.5 199 62-292 36-239 (267)
253 1kv9_A Type II quinohemoprotei 99.0 9.6E-08 3.3E-12 96.5 22.7 328 73-420 66-492 (668)
254 2p4o_A Hypothetical protein; p 98.9 6E-06 2E-10 74.9 32.0 123 53-183 24-148 (306)
255 3qqz_A Putative uncharacterize 98.9 7.2E-07 2.5E-11 77.1 23.7 221 55-289 20-251 (255)
256 3nol_A Glutamine cyclotransfer 98.9 2.9E-07 9.9E-12 78.9 20.3 185 9-223 52-244 (262)
257 3nok_A Glutaminyl cyclase; bet 98.9 2.4E-07 8.3E-12 79.3 19.6 184 10-223 65-254 (268)
258 2ad6_A Methanol dehydrogenase 98.9 2.3E-07 8E-12 91.6 22.0 331 73-420 62-498 (571)
259 3v64_C Agrin; beta propeller, 98.9 1.6E-05 5.3E-10 73.5 32.6 256 62-393 34-294 (349)
260 3mbr_X Glutamine cyclotransfer 98.9 2.2E-06 7.6E-11 72.8 23.9 216 52-288 10-230 (243)
261 3nok_A Glutaminyl cyclase; bet 98.8 8.7E-07 3E-11 75.9 21.1 209 52-282 44-255 (268)
262 1k3i_A Galactose oxidase precu 98.8 3E-07 1E-11 93.1 21.7 244 9-291 197-497 (656)
263 3v65_B Low-density lipoprotein 98.8 7.9E-06 2.7E-10 76.6 29.8 254 64-393 79-337 (386)
264 1w6s_A Methanol dehydrogenase 98.8 1.3E-06 4.5E-11 86.2 24.6 214 73-298 62-349 (599)
265 1ijq_A LDL receptor, low-densi 98.8 2.7E-05 9.3E-10 70.8 31.8 237 75-383 3-247 (316)
266 1k3i_A Galactose oxidase precu 98.8 4.2E-07 1.4E-11 92.1 20.1 117 66-186 190-327 (656)
267 3mbr_X Glutamine cyclotransfer 98.8 2.8E-06 9.7E-11 72.2 21.9 185 10-223 31-223 (243)
268 3p5b_L Low density lipoprotein 98.7 5.8E-05 2E-09 71.0 32.1 249 74-393 84-339 (400)
269 1flg_A Protein (quinoprotein e 98.7 5.1E-06 1.7E-10 82.2 25.7 113 74-190 69-201 (582)
270 3s94_A LRP-6, low-density lipo 98.7 9.8E-05 3.3E-09 73.5 34.7 160 62-238 84-246 (619)
271 3v65_B Low-density lipoprotein 98.7 3E-05 1E-09 72.7 28.5 201 61-292 115-319 (386)
272 2xbg_A YCF48-like protein; pho 98.7 0.00013 4.3E-09 66.7 31.9 279 61-414 35-320 (327)
273 2p4o_A Hypothetical protein; p 98.6 1.8E-05 6E-10 71.8 24.3 220 8-280 41-276 (306)
274 3v64_C Agrin; beta propeller, 98.6 0.00011 3.9E-09 67.6 30.1 201 61-292 72-276 (349)
275 3m0c_C LDL receptor, low-densi 98.6 9.1E-05 3.1E-09 75.5 31.4 196 65-291 388-589 (791)
276 3sov_A LRP-6, low-density lipo 98.6 6.3E-05 2.2E-09 68.2 27.4 246 75-392 6-256 (318)
277 1ijq_A LDL receptor, low-densi 98.6 0.00021 7E-09 64.9 29.7 230 12-292 3-239 (316)
278 4hw6_A Hypothetical protein, I 98.6 5.8E-05 2E-09 71.7 26.8 211 63-289 140-372 (433)
279 3sov_A LRP-6, low-density lipo 98.5 9.5E-05 3.3E-09 67.0 26.6 203 62-293 35-240 (318)
280 3qqz_A Putative uncharacterize 98.5 8E-05 2.7E-09 64.3 24.3 216 144-414 20-251 (255)
281 1n7d_A LDL receptor, low-densi 98.5 1.6E-06 5.6E-11 87.7 15.3 242 83-395 386-635 (699)
282 2fp8_A Strictosidine synthase; 98.5 3.3E-05 1.1E-09 70.6 22.7 210 151-417 19-270 (322)
283 3kya_A Putative phosphatase; s 98.5 0.00014 4.9E-09 69.1 27.0 169 106-290 140-340 (496)
284 3ei3_A DNA damage-binding prot 98.5 0.00063 2.2E-08 72.6 34.5 192 61-280 553-755 (1158)
285 3tc9_A Hypothetical hydrolase; 98.5 8.3E-05 2.8E-09 70.7 24.9 155 106-291 138-301 (430)
286 4a0p_A LRP6, LRP-6, low-densit 98.5 0.0017 5.9E-08 64.7 37.8 199 62-293 37-239 (628)
287 2xe4_A Oligopeptidase B; hydro 98.4 6.8E-05 2.3E-09 77.0 25.9 114 106-236 175-305 (751)
288 3p5b_L Low density lipoprotein 98.4 0.0011 3.8E-08 62.2 32.1 205 60-292 110-321 (400)
289 4a0p_A LRP6, LRP-6, low-densit 98.4 0.00081 2.8E-08 67.0 32.6 233 75-381 8-244 (628)
290 3tc9_A Hypothetical hydrolase; 98.4 0.00013 4.5E-09 69.3 25.5 156 63-235 138-301 (430)
291 4hw6_A Hypothetical protein, I 98.4 0.00027 9.4E-09 67.1 27.1 226 60-290 180-432 (433)
292 2xe4_A Oligopeptidase B; hydro 98.4 1.3E-05 4.4E-10 82.4 19.2 192 6-233 181-396 (751)
293 3kya_A Putative phosphatase; s 98.3 0.00075 2.6E-08 64.2 27.9 160 63-234 140-340 (496)
294 3s94_A LRP-6, low-density lipo 98.3 0.0036 1.2E-07 62.3 35.1 200 151-417 349-552 (619)
295 3m0c_C LDL receptor, low-densi 98.3 0.001 3.5E-08 67.9 29.3 207 60-294 422-635 (791)
296 2xzh_A Clathrin heavy chain 1; 98.2 0.0023 7.9E-08 56.2 28.4 271 81-417 47-333 (365)
297 3ei3_A DNA damage-binding prot 98.1 0.0087 3E-07 64.0 33.3 116 62-181 514-635 (1158)
298 1n7d_A LDL receptor, low-densi 98.1 1.8E-05 6.1E-10 80.2 11.6 206 62-294 406-617 (699)
299 2ism_A Putative oxidoreductase 98.1 0.0035 1.2E-07 57.7 25.5 260 105-404 31-333 (352)
300 3amr_A 3-phytase; beta-propell 98.0 0.0014 4.6E-08 58.9 20.9 192 73-290 40-262 (355)
301 2g8s_A Glucose/sorbosone dehyd 98.0 0.0093 3.2E-07 54.8 27.5 275 105-403 18-340 (353)
302 2p9w_A MAL S 1 allergenic prot 97.9 0.001 3.5E-08 59.1 18.3 171 56-235 7-215 (334)
303 2xbg_A YCF48-like protein; pho 97.9 0.012 4.2E-07 53.5 30.2 190 61-284 79-272 (327)
304 1bpo_A Protein (clathrin); cla 97.9 0.016 5.6E-07 53.2 30.7 270 81-417 46-332 (494)
305 3amr_A 3-phytase; beta-propell 97.8 0.004 1.4E-07 55.9 20.4 189 8-234 38-262 (355)
306 2p9w_A MAL S 1 allergenic prot 97.8 0.0025 8.6E-08 56.7 18.4 164 206-417 15-216 (334)
307 2ism_A Putative oxidoreductase 97.8 0.025 8.5E-07 52.0 30.4 103 62-170 31-153 (352)
308 3a9g_A Putative uncharacterize 97.7 0.028 9.4E-07 51.7 26.4 254 105-404 29-330 (354)
309 3sre_A PON1, serum paraoxonase 97.7 0.0089 3E-07 54.4 21.0 140 126-291 81-252 (355)
310 3das_A Putative oxidoreductase 97.7 0.031 1.1E-06 50.6 29.4 111 57-170 27-158 (347)
311 2xzh_A Clathrin heavy chain 1; 97.6 0.031 1E-06 49.3 26.4 221 128-420 49-294 (365)
312 2vpj_A Kelch-like protein 12; 97.6 0.019 6.5E-07 51.5 22.4 151 72-239 62-235 (301)
313 2vpj_A Kelch-like protein 12; 97.6 0.025 8.6E-07 50.6 23.3 151 72-239 14-188 (301)
314 3ii7_A Kelch-like protein 7; p 97.5 0.037 1.3E-06 49.7 23.3 230 10-292 12-273 (306)
315 4asc_A Kelch repeat and BTB do 97.5 0.034 1.2E-06 50.1 23.0 189 12-239 7-225 (315)
316 2g8s_A Glucose/sorbosone dehyd 97.5 0.055 1.9E-06 49.6 28.7 105 62-171 18-149 (353)
317 2xn4_A Kelch-like protein 2; s 97.5 0.055 1.9E-06 48.4 23.5 108 118-239 16-137 (302)
318 3ii7_A Kelch-like protein 7; p 97.4 0.061 2.1E-06 48.2 25.9 149 73-239 12-182 (306)
319 1tl2_A L10, protein (tachylect 97.4 0.0088 3E-07 49.4 15.1 151 118-287 4-159 (236)
320 4asc_A Kelch repeat and BTB do 97.4 0.037 1.3E-06 49.9 21.3 104 75-185 7-129 (315)
321 1zgk_A Kelch-like ECH-associat 97.4 0.071 2.4E-06 47.8 23.6 150 72-239 70-244 (308)
322 3das_A Putative oxidoreductase 97.3 0.085 2.9E-06 47.8 27.9 260 104-404 31-326 (347)
323 1zgk_A Kelch-like ECH-associat 97.3 0.091 3.1E-06 47.1 24.2 152 71-239 23-197 (308)
324 3a9g_A Putative uncharacterize 97.3 0.11 3.9E-06 47.5 30.8 105 61-170 28-153 (354)
325 2woz_A Kelch repeat and BTB do 97.2 0.11 3.9E-06 46.7 22.7 147 75-239 18-188 (318)
326 3pbp_A Nucleoporin NUP82; beta 97.2 0.055 1.9E-06 49.7 19.6 155 70-230 29-207 (452)
327 3ott_A Two-component system se 97.2 0.27 9.1E-06 50.6 37.6 293 63-421 192-507 (758)
328 1xi4_A Clathrin heavy chain; a 97.1 0.059 2E-06 57.5 21.6 268 82-416 47-331 (1630)
329 2woz_A Kelch repeat and BTB do 97.1 0.15 5.2E-06 45.9 23.0 154 69-239 53-235 (318)
330 2xn4_A Kelch-like protein 2; s 97.1 0.053 1.8E-06 48.5 18.8 150 72-238 108-279 (302)
331 1cru_A Protein (soluble quinop 97.1 0.22 7.4E-06 47.4 32.6 106 62-170 27-162 (454)
332 3ott_A Two-component system se 97.0 0.37 1.3E-05 49.5 32.6 276 61-412 21-303 (758)
333 1tl2_A L10, protein (tachylect 97.0 0.04 1.4E-06 45.6 15.3 189 73-285 4-204 (236)
334 1xi4_A Clathrin heavy chain; a 97.0 0.046 1.6E-06 58.2 19.4 222 127-420 47-293 (1630)
335 3sre_A PON1, serum paraoxonase 96.8 0.27 9.1E-06 44.7 23.9 197 63-288 51-295 (355)
336 1cru_A Protein (soluble quinop 96.8 0.36 1.2E-05 45.9 32.9 110 105-223 27-162 (454)
337 2be1_A Serine/threonine-protei 96.8 0.17 5.7E-06 45.6 18.9 117 74-192 11-140 (339)
338 2uvk_A YJHT; unknown function, 96.8 0.32 1.1E-05 44.5 21.9 96 72-172 19-128 (357)
339 3pbp_A Nucleoporin NUP82; beta 96.8 0.34 1.2E-05 44.6 20.7 159 117-287 31-208 (452)
340 2be1_A Serine/threonine-protei 96.7 0.1 3.5E-06 47.0 17.1 209 10-247 10-244 (339)
341 1bpo_A Protein (clathrin); cla 96.6 0.48 1.6E-05 43.8 29.4 204 66-292 70-290 (494)
342 2zwa_A Leucine carboxyl methyl 96.5 0.41 1.4E-05 48.5 21.8 158 72-239 451-639 (695)
343 3sbq_A Nitrous-oxide reductase 96.4 0.67 2.3E-05 44.3 26.8 287 75-405 72-454 (638)
344 2zwa_A Leucine carboxyl methyl 96.4 0.32 1.1E-05 49.2 20.2 158 71-237 396-579 (695)
345 2uvk_A YJHT; unknown function, 96.2 0.23 7.8E-06 45.6 17.1 141 83-238 168-345 (357)
346 3q6k_A 43.2 kDa salivary prote 95.9 0.66 2.3E-05 42.4 17.8 190 174-404 124-342 (381)
347 3s25_A Hypothetical 7-bladed b 95.6 1.1 3.8E-05 39.7 23.8 173 70-291 22-216 (302)
348 3sbq_A Nitrous-oxide reductase 95.3 2.1 7.2E-05 41.0 21.1 112 13-126 73-196 (638)
349 3s25_A Hypothetical 7-bladed b 95.1 1.7 5.7E-05 38.6 24.9 108 67-187 58-181 (302)
350 3qhy_B Beta-lactamase inhibito 93.9 3.1 0.00011 36.4 28.3 230 104-422 23-252 (282)
351 4gq2_M Nucleoporin NUP120; bet 91.3 5 0.00017 42.2 15.8 38 62-99 236-273 (950)
352 2wg3_C Hedgehog-interacting pr 91.0 11 0.00037 35.8 29.1 108 62-172 14-159 (463)
353 3b7f_A Glycosyl hydrolase, BNR 90.9 9.7 0.00033 35.1 33.3 167 61-232 54-259 (394)
354 3qhy_B Beta-lactamase inhibito 90.6 8.1 0.00028 33.7 26.2 183 63-291 25-207 (282)
355 4hvt_A Ritya.17583.B, post-pro 88.6 22 0.00075 35.8 25.2 207 63-292 130-382 (711)
356 2wg3_C Hedgehog-interacting pr 87.3 20 0.00068 33.9 27.8 55 105-161 14-79 (463)
357 3kci_A Probable E3 ubiquitin-p 85.8 21 0.00073 32.8 24.7 213 63-291 106-345 (389)
358 4gq2_M Nucleoporin NUP120; bet 84.9 18 0.00061 38.1 15.0 39 152-191 237-275 (950)
359 4hvt_A Ritya.17583.B, post-pro 84.5 36 0.0012 34.3 22.3 73 341-415 348-429 (711)
360 3b7f_A Glycosyl hydrolase, BNR 83.4 28 0.00094 32.0 30.5 102 74-178 23-143 (394)
361 4fhn_B Nucleoporin NUP120; pro 81.2 2.8 9.7E-05 45.2 7.4 38 62-99 238-275 (1139)
362 3mvd_K Regulator of chromosome 80.8 36 0.0012 31.6 30.3 115 106-236 76-208 (423)
363 1sqj_A OXG-RCBH, oligoxylogluc 80.8 54 0.0018 33.6 25.2 121 104-227 14-144 (789)
364 3q6k_A 43.2 kDa salivary prote 78.5 40 0.0014 30.8 21.4 118 61-182 151-306 (381)
365 3f7f_A Nucleoporin NUP120; nuc 77.2 62 0.0021 32.3 19.1 36 345-383 224-259 (729)
366 4fhn_B Nucleoporin NUP120; pro 75.4 54 0.0018 35.4 15.1 37 345-382 240-276 (1139)
367 1sqj_A OXG-RCBH, oligoxylogluc 73.4 86 0.0029 32.1 17.6 157 61-225 14-190 (789)
368 2ayu_A Nucleosome assembly pro 71.5 0.48 1.6E-05 43.5 -1.5 7 389-395 272-278 (417)
369 3zwu_A Alkaline phosphatase PH 67.8 20 0.00068 35.1 8.7 58 345-403 478-548 (592)
370 2cn3_A Xyloglucanase, beta-1,4 67.4 1.1E+02 0.0038 31.0 27.1 116 106-225 24-153 (737)
371 3l6v_A GYRA, DNA gyrase subuni 65.5 80 0.0028 28.7 29.3 155 69-236 3-181 (370)
372 3uc1_A DNA gyrase subunit A; D 63.7 80 0.0027 28.1 27.4 218 62-291 42-279 (327)
373 3uc1_A DNA gyrase subunit A; D 61.2 90 0.0031 27.8 25.0 160 216-415 109-278 (327)
374 3f7f_A Nucleoporin NUP120; nuc 59.3 14 0.00049 36.8 6.0 36 62-99 222-257 (729)
375 4a9v_A PHOX; hydrolase, beta-p 59.0 43 0.0015 32.4 9.0 58 345-403 478-548 (592)
376 3zwu_A Alkaline phosphatase PH 58.1 33 0.0011 33.5 8.3 60 63-124 477-548 (592)
377 1zi0_A DNA gyrase subunit A; b 58.0 98 0.0033 27.2 28.6 256 8-291 1-277 (307)
378 3l6v_A GYRA, DNA gyrase subuni 56.6 1.2E+02 0.004 27.6 29.4 254 8-291 5-316 (370)
379 4a9v_A PHOX; hydrolase, beta-p 54.0 57 0.0019 31.6 8.9 61 62-125 476-549 (592)
380 1zi0_A DNA gyrase subunit A; b 53.3 1.2E+02 0.004 26.7 28.2 161 117-291 2-176 (307)
381 4d9s_A UVB-resistance protein 47.9 1.7E+02 0.0057 26.9 32.5 210 62-291 16-253 (406)
382 1wp5_A Topoisomerase IV; broke 47.6 1.5E+02 0.0051 26.2 28.3 253 8-291 3-277 (323)
383 3a0f_A Xyloglucanase; beta-pro 46.8 2.5E+02 0.0085 28.6 18.1 164 61-230 20-208 (763)
384 4aco_A Centromere DNA-binding 44.9 4.6 0.00016 40.0 0.0 14 22-35 190-203 (956)
385 2zux_A YESW protein; beta-prop 42.7 2.4E+02 0.0083 27.2 28.0 65 350-417 457-533 (591)
386 4d9s_A UVB-resistance protein 40.2 2.2E+02 0.0075 26.1 32.9 211 62-291 68-305 (406)
387 3kci_A Probable E3 ubiquitin-p 37.4 2.4E+02 0.0081 25.6 33.3 212 64-291 55-293 (389)
388 1xks_A Nuclear pore complex pr 35.7 2.8E+02 0.0095 25.9 16.3 192 154-382 41-245 (450)
389 4aco_A Centromere DNA-binding 35.4 7.9 0.00027 38.4 0.0 6 87-92 192-197 (956)
390 1suu_A DNA gyrase subunit A; t 33.2 2.5E+02 0.0085 24.6 27.9 253 8-290 6-282 (312)
391 3no0_A DNA gyrase subunit A; D 32.6 2.4E+02 0.0081 24.2 23.6 113 106-235 25-146 (276)
392 1wp5_A Topoisomerase IV; broke 29.3 3E+02 0.01 24.3 26.5 199 71-291 3-225 (323)
393 3al9_A Plexin-A2; beta-propell 27.0 2.2E+02 0.0075 27.5 8.4 71 106-177 401-476 (539)
394 3of7_A Regulator of chromosome 24.5 4.4E+02 0.015 24.7 29.3 176 105-291 148-341 (473)
395 1q47_A Semaphorin 3A; beta pro 22.8 1.8E+02 0.0062 27.6 6.9 55 357-411 423-487 (495)
396 2cn3_A Xyloglucanase, beta-1,4 22.4 6.1E+02 0.021 25.5 28.6 108 62-171 23-152 (737)
397 1q47_A Semaphorin 3A; beta pro 21.1 4E+02 0.014 25.3 8.8 71 106-177 405-487 (495)
398 1zvt_A Topoisomerase IV subuni 20.0 4E+02 0.014 22.5 19.4 70 345-416 86-163 (256)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-51 Score=414.69 Aligned_cols=421 Identities=14% Similarity=0.153 Sum_probs=320.0
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceecc-------------ccch----hhccccc----ceEEe----eeeeEEcC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTR-------------NFAL----RRRASED----LVLRL----GIYAKLDK 59 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~-------------~~~~----~~~~~~~----~~~~~----~~~~~~~~ 59 (538)
-|+|++++||+|+.|++|+|||+.+++.... .|.+ +++++.+ ..+++ .....+.+
T Consensus 66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g 145 (611)
T 1nr0_A 66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG 145 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC
T ss_pred EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC
Confidence 4678999999999999999999975543211 1111 2222221 12222 34456889
Q ss_pred CcCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccC
Q 009266 60 HRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (538)
Q Consensus 60 h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~ 138 (538)
|...|++++|+|++. +|++|+.|++|++|+..+++++..+ .+|...|++++|+| ++++|++++.|++|++|++.++
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCC
Confidence 999999999999986 6999999999999999988887776 89999999999999 9999999999999999999888
Q ss_pred ceeeeeecc-------ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeeccc-----------------
Q 009266 139 GGVETKLLG-------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI----------------- 194 (538)
Q Consensus 139 ~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------- 194 (538)
+.+.. +. +|...|.+++|+|++ .+|++++.|++|++||+.+++.+..+.....
T Consensus 223 ~~~~~--~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 223 TKTGV--FEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299 (611)
T ss_dssp CEEEE--CBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred cEeee--eccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence 76654 32 799999999999999 7899999999999999999887665542110
Q ss_pred ------------------CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCc
Q 009266 195 ------------------DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (538)
Q Consensus 195 ------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 256 (538)
....+ |...|.+++|+|+ +++|++++.|++|++|++.+++.. ...
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~~~g--h~~~v~~l~~spd-g~~l~s~s~D~~v~~Wd~~~~~~~--------------~~~ 362 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQVRYG--HNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISN--------------RVF 362 (611)
T ss_dssp EETTCCEEEEETTTTEEEEEECC--CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEE--------------ECS
T ss_pred EeCCCcEEEEeCCCCCcceEEcC--CCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcee--------------eec
Confidence 00112 4558999999997 799999999999999999886532 112
Q ss_pred cCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCC------CCC-------CCc--------------------
Q 009266 257 IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP------PPS-------SPV-------------------- 303 (538)
Q Consensus 257 ~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~------~~~-------~~~-------------------- 303 (538)
...|...|.+++|++++.++.++.++.+++|++........ +.. ++.
T Consensus 363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~ 442 (611)
T 1nr0_A 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 442 (611)
T ss_dssp SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence 24567889999999888666655688999999876543221 000 000
Q ss_pred -----cccccccccCCCCccccCCCCCCCCccc--------CCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 304 -----STRSEASEMGSDHTSAASPSTANTDVRI--------APQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 304 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
.....+..++|+++.++..+.+...+.. .... .+|... |.+++| +|+|++||+++.|++|++|
T Consensus 443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~--v~~v~f-spdg~~las~s~d~~v~~w 518 (611)
T 1nr0_A 443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE--ITSVAF-SNNGAFLVATDQSRKVIPY 518 (611)
T ss_dssp EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC--EEEEEE-CTTSSEEEEEETTSCEEEE
T ss_pred eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCc--eEEEEE-CCCCCEEEEEcCCCCEEEE
Confidence 0112234566777777766655432211 1122 456665 999999 9999999999999999999
Q ss_pred eccC-cceeEE--eecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc---cccCcc-ceeeeecc--cCceeeec
Q 009266 371 KKKG-GELIRV--IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR---ATLPTN-IEQVLIPD--HIRWFALG 441 (538)
Q Consensus 371 d~~~-~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~---~~~~~~-~~~~~~~~--~~~~l~s~ 441 (538)
++.+ ++++.. +.+|...|++++|+|++++||+++.|++|+||++.++.. ..+.+| ...+..+. +++.|+++
T Consensus 519 ~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~ 598 (611)
T 1nr0_A 519 SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA 598 (611)
T ss_dssp EGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEE
T ss_pred EcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEe
Confidence 9987 665554 345999999999999999999999999999999987652 345678 77787776 66679999
Q ss_pred cCCCCCceeec
Q 009266 442 DDDDGDYYFYD 452 (538)
Q Consensus 442 ~~d~~~~~~~~ 452 (538)
+.|+....|..
T Consensus 599 ~~D~~i~lW~~ 609 (611)
T 1nr0_A 599 GQDSNIKFWNV 609 (611)
T ss_dssp ETTSCEEEEEC
T ss_pred cCCCCEEEEec
Confidence 99999888753
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.8e-50 Score=408.18 Aligned_cols=409 Identities=13% Similarity=0.138 Sum_probs=299.5
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.|+|++++|++++ +++|+||++.+++.. ..+.+|...|++++|+|+|++||+|+.|++
T Consensus 25 ~~spdg~~l~~~~-~~~v~l~~~~~~~~~---------------------~~~~~h~~~v~~~~~spdg~~lasg~~d~~ 82 (611)
T 1nr0_A 25 GNTPAGDKIQYCN-GTSVYTVPVGSLTDT---------------------EIYTEHSHQTTVAKTSPSGYYCASGDVHGN 82 (611)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTCSSCC---------------------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeCCCCCEEEeCC-CCEEEEecCCCcccC---------------------eEecCCCCceEEEEECCCCcEEEEEeCCCC
Confidence 4678999999988 569999999877653 678899999999999999999999999999
Q ss_pred EEEEECCCCce--eeee-------------------------------------------ccCCCCCeEEEEEeecCCCc
Q 009266 85 VILWDWKTERV--KLSF-------------------------------------------HSGHNDNVFQAKIMPFTDDR 119 (538)
Q Consensus 85 i~iw~~~~~~~--~~~~-------------------------------------------~~~~~~~v~~l~~~~~~~~~ 119 (538)
|+||++.+++. ...+ +.+|...|++++|+| ++.
T Consensus 83 v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p--~~~ 160 (611)
T 1nr0_A 83 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP--SRP 160 (611)
T ss_dssp EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS--SSS
T ss_pred EEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECC--CCC
Confidence 99999864322 1111 245677777888887 665
Q ss_pred -eEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCC
Q 009266 120 -SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR 198 (538)
Q Consensus 120 -~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 198 (538)
+|++++.|++|++|+..+.+.... +.+|...|++++|+|++ .+|++++.|++|++|++.+++.+..+..... ...
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~~~~~~--l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~-~~~ 236 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPFKFKST--FGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSL-KNV 236 (611)
T ss_dssp CEEEEEETTSCEEEEETTTBEEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTS-SSC
T ss_pred eEEEEEeCCCeEEEEECCCCeEeee--eccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccc-ccc
Confidence 589999999999999887665544 88999999999999999 7999999999999999999988766532110 011
Q ss_pred CcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcc----------------------------
Q 009266 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY---------------------------- 250 (538)
Q Consensus 199 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---------------------------- 250 (538)
+ |...|.+++|+|+ +.+|++++.|++|++||+.+++.......+.....
T Consensus 237 ~--h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 237 A--HSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp S--SSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred c--cCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 2 4558999999998 78999999999999999998765433221110000
Q ss_pred cCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCC-CCCccccccccccCCCCccccCCCCCCC-
Q 009266 251 FCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP-SSPVSTRSEASEMGSDHTSAASPSTANT- 327 (538)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (538)
..+.....+|...|.+++|+|+|++|++++ ++.|++|++.++.....+. .+...... ..+.+++. ++....+..
T Consensus 314 ~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~--~~~s~~~~-l~s~s~d~~v 390 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG--IKTTSKGD-LFTVSWDDHL 390 (611)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE--EEECTTSC-EEEEETTTEE
T ss_pred CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEE--EEECCCCc-EEEEEcCCce
Confidence 001123346788999999999999999998 6699999998875433321 11111111 11111111 110000000
Q ss_pred -------------------------------------------Cc---ccCCceeeccccceeeeEEEEecCCCcEEEEe
Q 009266 328 -------------------------------------------DV---RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 328 -------------------------------------------~~---~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g 361 (538)
.. ...+..+. |.. .+.+++| +|+|++||+|
T Consensus 391 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~-~~~--~v~~va~-spdg~~lasg 466 (611)
T 1nr0_A 391 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP-ISY--NSSCVAL-SNDKQFVAVG 466 (611)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE-CSS--CEEEEEE-CTTSCEEEEE
T ss_pred EEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee-cCC--CceEEEE-eCCCCEEEEe
Confidence 00 00011111 222 3788998 9999999999
Q ss_pred ccCCeEEEeeccCcce--eEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC-Ccccc---cCccceeeeecc--
Q 009266 362 SDCGRIFIWKKKGGEL--IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA-ADRAT---LPTNIEQVLIPD-- 433 (538)
Q Consensus 362 s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~-~~~~~---~~~~~~~~~~~~-- 433 (538)
+.|++|+||++.+++. +.. .+|...|++++|+|++++||+++.|++|++|++.+ +++.. +..|...|..++
T Consensus 467 s~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 467 GQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp ETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred CCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC
Confidence 9999999999987654 234 67999999999999999999999999999999987 44432 234888888877
Q ss_pred cCc-eeeeccCCCCCceeec
Q 009266 434 HIR-WFALGDDDDGDYYFYD 452 (538)
Q Consensus 434 ~~~-~l~s~~~d~~~~~~~~ 452 (538)
|++ +|++++.|+....|..
T Consensus 546 pdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 546 PDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp TTSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEECCCcEEEEEC
Confidence 777 9999999999999865
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8e-49 Score=376.35 Aligned_cols=290 Identities=18% Similarity=0.343 Sum_probs=260.1
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
....+.+|..+|++++|+|++++|++|+.||+|+||++.+++.+..+ .+|...|++++|+| ++.+|++|+.|++|++
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~--~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDH--SGKLLASCSADMTIKL 176 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCCCE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence 35678899999999999999999999999999999999999987777 79999999999999 9999999999999999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
|++.+...+.. +.+|...|.+++|+|++ .+|++|+.|++|++||++++.++..+..+ ...|.+++|+
T Consensus 177 wd~~~~~~~~~--~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h----------~~~v~~~~~~ 243 (410)
T 1vyh_C 177 WDFQGFECIRT--MHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGH----------REWVRMVRPN 243 (410)
T ss_dssp EETTSSCEEEC--CCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECC----------SSCEEEEEEC
T ss_pred EeCCCCceeEE--EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCC----------CccEEEEEEC
Confidence 99988877655 88999999999999998 68999999999999999999988877653 3379999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC--------------------
Q 009266 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-------------------- 272 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-------------------- 272 (538)
|+ +.+|++|+.|++|++|++++++.. .....|...|.+++|+|+
T Consensus 244 ~~-g~~l~s~s~D~~v~vwd~~~~~~~---------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 244 QD-GTLIASCSNDQTVRVWVVATKECK---------------AELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp TT-SSEEEEEETTSCEEEEETTTCCEE---------------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred CC-CCEEEEEcCCCeEEEEECCCCcee---------------eEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 97 799999999999999999876531 223456788999999996
Q ss_pred CCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEe
Q 009266 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (538)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 351 (538)
+.+|++++ ++.|++||+.+ ...+..+.+|... |.+++|
T Consensus 308 g~~l~sgs~D~~i~iwd~~~--------------------------------------~~~~~~~~~h~~~--v~~v~~- 346 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVST--------------------------------------GMCLMTLVGHDNW--VRGVLF- 346 (410)
T ss_dssp CCEEEEEETTSEEEEEETTT--------------------------------------TEEEEEEECCSSC--EEEEEE-
T ss_pred CCEEEEEeCCCeEEEEECCC--------------------------------------CceEEEEECCCCc--EEEEEE-
Confidence 66888888 66999999987 4456778888886 899999
Q ss_pred cCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 352 s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
+|++++|++|+.||.|++|++.+++++..+.+|...|++++|+|++++||+|+.||+|+||+++
T Consensus 347 ~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999863
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.5e-48 Score=390.09 Aligned_cols=366 Identities=22% Similarity=0.376 Sum_probs=307.8
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceecc-----------ccch----hhcccccceEEe-----eeeeEEcCCcCcE
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTR-----------NFAL----RRRASEDLVLRL-----GIYAKLDKHRGCV 64 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~-----------~~~~----~~~~~~~~~~~~-----~~~~~~~~h~~~v 64 (538)
.+.|++++|++++.++.|+||+.. ++++.. .|.+ +++++.+..+++ +.+..+.+|...|
T Consensus 187 ~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v 265 (577)
T 2ymu_A 187 AFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 265 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCE
T ss_pred eecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCE
Confidence 467889999999999999999965 554432 1111 455566666665 6678899999999
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee
Q 009266 65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (538)
Q Consensus 65 ~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 144 (538)
++++|+|++++|++++.++.|++|+.. ++.+..+ .+|...|++++|+| ++.+|++++.+++|++|++.... +.
T Consensus 266 ~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~~~d~~i~~w~~~~~~-~~-- 338 (577)
T 2ymu_A 266 NGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQH-LQ-- 338 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSCE-EE--
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCe-eE--
Confidence 999999999999999999999999964 5655555 79999999999999 99999999999999999986543 33
Q ss_pred eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC
Q 009266 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 224 (538)
.+.+|...|.+++|+|++ .+|++++.++.|++|+. +++.+..+.. +...|.+++|+|+ +++|++++.
T Consensus 339 ~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~~~~~~~~----------~~~~v~~~~~s~d-g~~l~~~~~ 405 (577)
T 2ymu_A 339 TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVRGVAFSPD-GQTIASASD 405 (577)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCCEEEEEEC----------CSSCEEEEEECTT-SSCEEEEET
T ss_pred EEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCCEEEEecC----------CCCCeEEEEECCC-CCEEEEEeC
Confidence 377899999999999999 68999999999999995 4566655554 3347999999998 789999999
Q ss_pred CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCc
Q 009266 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPV 303 (538)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 303 (538)
++.|++|+... +. ......|...|.+++|+|++++|++++ ++.|++|++.
T Consensus 406 d~~v~~~~~~~-~~---------------~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~------------- 456 (577)
T 2ymu_A 406 DKTVKLWNRNG-QL---------------LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN------------- 456 (577)
T ss_dssp TSEEEEECTTC-CE---------------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-------------
T ss_pred CCEEEEEeCCC-CE---------------EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-------------
Confidence 99999999643 21 122345678999999999999999988 5689999964
Q ss_pred cccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeec
Q 009266 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 383 (538)
...+..+.+|... |.+++| +|++++||+++.|+.|+||+. +++++..+.+
T Consensus 457 --------------------------~~~~~~~~~~~~~--v~~~~~-spd~~~las~~~d~~i~iw~~-~~~~~~~~~~ 506 (577)
T 2ymu_A 457 --------------------------GQLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 506 (577)
T ss_dssp --------------------------SCEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred --------------------------CCEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC
Confidence 3345677888876 899999 999999999999999999995 7889999999
Q ss_pred CcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceeeeecc--cCc-eeeeccCCCCCcee
Q 009266 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYF 450 (538)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~ 450 (538)
|...|++++|+|++++||+++.||.|+||+........+.+|...|..+. +++ +|++++.|+..+.|
T Consensus 507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 99999999999999999999999999999987666678889999998776 666 99999999988776
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-47 Score=358.75 Aligned_cols=294 Identities=18% Similarity=0.275 Sum_probs=254.3
Q ss_pred EeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCc
Q 009266 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (538)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~ 129 (538)
.++..+++++|.+.|++++|+|++++|++|+.||+|+||++.+++.+..+ ..|...|.+++|+| ++.+|++++.|+.
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~s~~~d~~ 120 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAP--SGNYVACGGLDNI 120 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECT--TSSEEEEEETTCE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECC--CCCEEEEEeCCCe
Confidence 34567889999999999999999999999999999999999999987777 78999999999999 9999999999999
Q ss_pred EEEeecccCce--eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 130 VRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 130 v~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
|++|++.+... .....+.+|...|.++.|++++ .|++++.|++|++||+++++.+..+..+ ...|.
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h----------~~~v~ 188 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGH----------TGDVM 188 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCC----------SSCEE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCC----------CCceE
Confidence 99999986542 2334577899999999999987 4899999999999999999888777643 34799
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEE
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~ 286 (538)
+++|+|+ +.+|++|+.|+.|++||+++++. ......|...|.+++|+|++++|++++ ++.|++
T Consensus 189 ~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~i 252 (340)
T 1got_B 189 SLSLAPD-TRLFVSGACDASAKLWDVREGMC---------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252 (340)
T ss_dssp EEEECTT-SSEEEEEETTSCEEEEETTTCSE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEECCC-CCEEEEEeCCCcEEEEECCCCee---------------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 9999997 78999999999999999988653 223345778999999999999999998 669999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCe
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~ 366 (538)
|+++++ ..+..+..+.....|.+++| +|+|++|++|+.||.
T Consensus 253 wd~~~~--------------------------------------~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 253 FDLRAD--------------------------------------QELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFN 293 (340)
T ss_dssp EETTTT--------------------------------------EEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTSE
T ss_pred EECCCC--------------------------------------cEEEEEccCCcccceEEEEE-CCCCCEEEEECCCCe
Confidence 998763 12222322222223889999 999999999999999
Q ss_pred EEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
|++|++.+++.+..+.+|...|++++|+|++++||||+.|+.|+||+
T Consensus 294 i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999999999996
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.6e-48 Score=355.80 Aligned_cols=289 Identities=21% Similarity=0.320 Sum_probs=253.5
Q ss_pred eeEEcCCcCcEEEEEEcCC----CCEEEEecCCCeEEEEECCCCceeee-eccCCCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 54 YAKLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~----g~~l~t~~~d~~i~iw~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
.+.+++|.+.|++++|+|+ +.+|+||+.|++|+||++..++.... .+.+|...|.+++|+| ++.++++++.|+
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~--~~~~l~s~s~D~ 102 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSLDA 102 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS--SSSEEEEEETTS
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC--CCCEEEEEeCCC
Confidence 4667899999999999985 67999999999999999987764332 3489999999999999 999999999999
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
+|++|++.+++.+.. +..|...+.+++|+|++ .+|++++.++.|++|++++++....+..+ ...|.+
T Consensus 103 ~i~lWd~~~~~~~~~--~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~----------~~~v~~ 169 (321)
T 3ow8_A 103 HIRLWDLENGKQIKS--IDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTR----------GKFILS 169 (321)
T ss_dssp EEEEEETTTTEEEEE--EECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECS----------SSCEEE
T ss_pred cEEEEECCCCCEEEE--EeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCC----------CceEEE
Confidence 999999998877655 67788899999999999 78999999999999999999887766543 236899
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEe
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~ 287 (538)
++|+|+ +++|++|+.||.|++||+++++.. .....|...|.+++|+|++++|++++ ++.|++|
T Consensus 170 ~~~spd-g~~lasg~~dg~i~iwd~~~~~~~---------------~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iw 233 (321)
T 3ow8_A 170 IAYSPD-GKYLASGAIDGIINIFDIATGKLL---------------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233 (321)
T ss_dssp EEECTT-SSEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEECCC-CCEEEEEcCCCeEEEEECCCCcEE---------------EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEE
Confidence 999998 799999999999999999987632 22345678899999999999999998 5689999
Q ss_pred eccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeE
Q 009266 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (538)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i 367 (538)
++.+ ......+.+|... |.+++| +|++++|++|+.|++|
T Consensus 234 d~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 234 DVQH--------------------------------------ANLAGTLSGHASW--VLNVAF-CPDDTHFVSSSSDKSV 272 (321)
T ss_dssp ETTT--------------------------------------CCEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCE
T ss_pred ECCC--------------------------------------cceeEEEcCCCCc--eEEEEE-CCCCCEEEEEeCCCcE
Confidence 9876 3445678888876 999999 9999999999999999
Q ss_pred EEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
+||++.+++++.++.+|...|++++|+|++++|++++.||.|+||++
T Consensus 273 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999996
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-47 Score=351.55 Aligned_cols=294 Identities=17% Similarity=0.266 Sum_probs=253.2
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcE
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
+.+.+++++|.+.|++++|+|++++|++|+.||+|+||++.++..+..+ ..|..+|.+++|+| ++++|++|+.|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFRI 79 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeC--CCCEEEEECCCCEE
Confidence 4567889999999999999999999999999999999999999887777 78999999999999 99999999999999
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee-eeeeecccCCCCCcceeeeeEEE
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
++|++.+++.+.. +.+|...|++++|+|++ .+|++|+.|++|++||++++... ..+.. |...|.++
T Consensus 80 ~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~----------h~~~v~~v 146 (304)
T 2ynn_A 80 RVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMCV 146 (304)
T ss_dssp EEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECC----------CCSCEEEE
T ss_pred EEEECCCCcEEEE--EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcc----------cCCcEEEE
Confidence 9999999887765 78999999999999999 68999999999999999887443 33333 34479999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC--CCCEEEEEc-CCeEEE
Q 009266 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIYL 286 (538)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~-~~~i~~ 286 (538)
+|+|.++.+|++|+.|++|++||++.... ......++...+..+.|+| ++++|++++ ++.|++
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~i 212 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETTCSSC--------------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 99996578999999999999999987542 1223344567889999987 678898888 669999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCe
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~ 366 (538)
|++.+ ...+..+.+|... |.+++| +|++++|++|+.||+
T Consensus 213 Wd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 213 WDYQT--------------------------------------KSCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDGT 251 (304)
T ss_dssp EETTT--------------------------------------TEEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSC
T ss_pred EeCCC--------------------------------------CccceeeCCCCCC--EEEEEE-CCCCCEEEEEcCCCe
Confidence 99987 4566788899887 889998 999999999999999
Q ss_pred EEEeeccCcceeEEeecCcceeeEEeecCCCC--eEEEeecCCceEEecCCC
Q 009266 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHST--VLASSGIESDIKILTPNA 416 (538)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~v~vw~~~~ 416 (538)
|+||++.+++++..+..|...+.+++|+|+++ +||+|+ +..+.+|++..
T Consensus 252 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp EEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred EEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 99999999999999999999999999999886 466665 55577777654
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.2e-48 Score=366.66 Aligned_cols=306 Identities=19% Similarity=0.299 Sum_probs=256.8
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
...++|++|.+.|++++|+|++++||||+.|++|+||++.+++.+..+ ..|...|.+++|+| ++++|++|+.|+.|+
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~--~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAP--NGQSVACGGLDSACS 133 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECT--TSSEEEECCSSSCCE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCcEE
Confidence 456889999999999999999999999999999999999999988777 78999999999999 999999999999999
Q ss_pred EeecccCc-----eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee
Q 009266 132 HAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (538)
Q Consensus 132 vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (538)
+|++.+.. ......+.+|...|.++.|.|++...|++|+.|++|++||+++++.+..+..... .+ +...|
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~---~~--h~~~v 208 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP---SG--HTADV 208 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS---SS--CCSCE
T ss_pred EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC---CC--CccCe
Confidence 99987532 1223447899999999999998767899999999999999999988776632211 11 44579
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEE
Q 009266 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (538)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~ 285 (538)
.+++|+|.++.+|++|+.|++|++||++... ........|...|.+++|+|++++|++++ ++.|+
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~ 274 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITS--------------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTC--------------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCC--------------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEE
Confidence 9999988558999999999999999998532 12334456788999999999999999998 56999
Q ss_pred EeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccc-----ceeeeEEEEecCCCcEEEE
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-----CVTVKGVNFFGPKCEYVVS 360 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~v~~~s~~~~~l~~ 360 (538)
+||+.++... ..+..+.. ...+.+++| +|+|++|++
T Consensus 275 lwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~ 315 (380)
T 3iz6_a 275 LFDMRTGHQL--------------------------------------QVYNREPDRNDNELPIVTSVAF-SISGRLLFA 315 (380)
T ss_dssp EEETTTTEEE--------------------------------------EEECCCCSSSCCSSCSCSEEEE-CSSSSEEEE
T ss_pred EEECCCCcEE--------------------------------------EEecccccccccccCceEEEEE-CCCCCEEEE
Confidence 9999874321 22221110 112789998 999999999
Q ss_pred eccCCeEEEeeccCcceeEEe----ecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCc
Q 009266 361 GSDCGRIFIWKKKGGELIRVI----EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 361 gs~dg~i~iwd~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 418 (538)
|+.+|.|++||+.+++.+..+ .+|.+.|++++|+|++++|+||+.|++|+||++...+
T Consensus 316 g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999888777 6799999999999999999999999999999998653
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-47 Score=359.52 Aligned_cols=292 Identities=15% Similarity=0.183 Sum_probs=234.8
Q ss_pred EcCCcCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCCceeeee---ccCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 57 LDKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~g~~l~t~~~------d~~i~iw~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
...|...|++++|+|+|++||+|+. |+.|++|+..++.....+ ..+|...|++++|+| ++. +++++.+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--d~~-~l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS--EKG-ILVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET--TTE-EEEEETT
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC--CCC-EEEEECC
Confidence 4579999999999999999999997 788999998877643332 246888999999999 775 5567889
Q ss_pred CcEEEeecccCceeee--eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeee
Q 009266 128 GQVRHAQILERGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
|+|+||++.+++.... ....+|...|++++|+|++ ++|++++.|+.|++||+++++.+..+..+ ...
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h----------~~~ 183 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAH----------SSE 183 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCC----------SSC
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCC----------CCC
Confidence 9999999988765433 2345799999999999999 78999999999999999999888877653 347
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-CEEEEEc-CCe
Q 009266 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEF 283 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~ 283 (538)
|++++|+|++..+|++++.||.|++||+++++.... .....+...+.+++|+|++ .+|++++ ++.
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-------------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~ 250 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-------------IDFCASDTIPTSVTWHPEKDDTFACGDETGN 250 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-------------CCCTTCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeee-------------eeeccccccccchhhhhcccceEEEeecccc
Confidence 999999998667899999999999999998763221 1223356789999999974 6788777 568
Q ss_pred EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC-cEEEEec
Q 009266 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGS 362 (538)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~l~~gs 362 (538)
|++|++.+ ...++.+.+|... |++++| +|++ ++||+|+
T Consensus 251 i~~wd~~~--------------------------------------~~~~~~~~~~~~~--v~~l~~-sp~~~~~lasgs 289 (357)
T 4g56_B 251 VSLVNIKN--------------------------------------PDSAQTSAVHSQN--ITGLAY-SYHSSPFLASIS 289 (357)
T ss_dssp EEEEESSC--------------------------------------GGGCEEECCCSSC--EEEEEE-CSSSSCCEEEEE
T ss_pred eeEEECCC--------------------------------------CcEeEEEecccee--EEEEEE-cCCCCCEEEEEe
Confidence 99999987 4566788888876 999999 9987 5899999
Q ss_pred cCCeEEEeeccCcceeEEeecCcceeeEEeecC-CCCeEEEeecCCceEEecCCCC
Q 009266 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
.|++|+|||+.+++++..+ +|...|++|+|+| ++++|||++.||+|++|++...
T Consensus 290 ~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 290 EDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999887665 7999999999998 7899999999999999998653
No 10
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.4e-47 Score=380.81 Aligned_cols=385 Identities=21% Similarity=0.305 Sum_probs=298.0
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-|+|++++||+|+.|++|+|||. +++++ +++.+|.+.|++|+|+|++++||+++.|++
T Consensus 23 a~spdg~~las~~~d~~v~iWd~-~~~~~---------------------~~l~gh~~~V~~l~fspdg~~las~~~d~~ 80 (577)
T 2ymu_A 23 AFSPDGQTIASASDDKTVKLWNR-NGQLL---------------------QTLTGHSSSVWGVAFSPDGQTIASASDDKT 80 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECT-TSCEE---------------------EEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EECCCCCEEEEEeCCCEEEEEEC-CCCEE---------------------EEEeCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 36789999999999999999996 46653 678999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee-----------------------
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV----------------------- 141 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~----------------------- 141 (538)
|+||++ +++++..+ .+|...|.+++|+| ++++|++++.++.+++|+.......
T Consensus 81 i~vWd~-~~~~~~~~-~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 156 (577)
T 2ymu_A 81 VKLWNR-NGQLLQTL-TGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 156 (577)
T ss_dssp EEEEET-TSCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred EEEEEC-CCCEEEEE-ECCCCCEEEEEECC--CCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCcccee
Confidence 999996 56776766 78999999999999 8999998888888888875321100
Q ss_pred --------------------------------------------------------eeeeccccCCCcEEEEEcCCCCcE
Q 009266 142 --------------------------------------------------------ETKLLGKHQGRAHKLAIEPGSPHV 165 (538)
Q Consensus 142 --------------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~ 165 (538)
....+.+|...|.+++|+|++ .+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg-~~ 235 (577)
T 2ymu_A 157 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG-QT 235 (577)
T ss_dssp EETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS-SC
T ss_pred cccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCC-CE
Confidence 001133456666777777766 45
Q ss_pred EEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
|++++.++.|++|+.. ++.+..+.. +...|.+++|+|+ +.+|++++.++.|++|+.....
T Consensus 236 l~~~~~d~~i~~w~~~-~~~~~~~~~----------~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~~~~-------- 295 (577)
T 2ymu_A 236 IASASDDKTVKLWNRN-GQLLQTLTG----------HSSSVNGVAFRPD-GQTIASASDDKTVKLWNRNGQL-------- 295 (577)
T ss_dssp EEEEETTSCEEEECTT-SCEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSCE--------
T ss_pred EEEEeCCCEEEEEeCC-CCEEEEEec----------CCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCcE--------
Confidence 6667777777777643 333333332 3447999999998 7899999999999999965421
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
......|...|.+++|+|++++|++++ ++.|++|++..... ..+.... .......+.+++..++....
T Consensus 296 --------~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~--~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 296 --------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHS--SSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp --------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred --------EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeCCC--CCEEEEEECCCCCEEEEEeC
Confidence 123345778999999999999999988 56899999765422 1222221 22233445666666655443
Q ss_pred CCC-----CcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCe
Q 009266 325 ANT-----DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV 399 (538)
Q Consensus 325 ~~~-----~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 399 (538)
... .....+..+.+|... |.+++| +|++++|++++.|+.|++|+. +++++..+.+|...|++++|+|++++
T Consensus 365 dg~v~~~~~~~~~~~~~~~~~~~--v~~~~~-s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~ 440 (577)
T 2ymu_A 365 DKTVKLWNRNGQLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQT 440 (577)
T ss_dssp TSEEEEEETTCCEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCEEEEEcCCCCEEEEecCCCCC--eEEEEE-CCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCE
Confidence 332 123455677788776 899999 999999999999999999995 67888999999999999999999999
Q ss_pred EEEeecCCceEEecCCCCcccccCccceeeeecc--cCc-eeeeccCCCCCceee
Q 009266 400 LASSGIESDIKILTPNAADRATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYFY 451 (538)
Q Consensus 400 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~~ 451 (538)
|++++.|+.|++|++.......+.+|...+..+. |++ +|++++.++..+.|.
T Consensus 441 l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~ 495 (577)
T 2ymu_A 441 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495 (577)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc
Confidence 9999999999999988777778888888888776 666 999999999888874
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.5e-47 Score=354.46 Aligned_cols=295 Identities=15% Similarity=0.246 Sum_probs=253.1
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcE
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
++..+.+++|.+.|++++|+|++++||||+.||+|+||+..+++....+ ..|...|.+++|+| ++.+|++++.|+.+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp--~g~~lasg~~d~~i 130 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAP--SGCAIACGGLDNKC 130 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECT--TSSEEEEESTTSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCCE
Confidence 3567889999999999999999999999999999999999998887776 67889999999999 99999999999999
Q ss_pred EEeecccCce----eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee
Q 009266 131 RHAQILERGG----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (538)
Q Consensus 131 ~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (538)
++|++..... .....+..|...|.+++|+|++ ..|++++.|++|++||+++++.+..+..+ ...|
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h----------~~~v 199 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGH----------GADV 199 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECC----------SSCE
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCC----------CCCe
Confidence 9999864321 1223466899999999999998 68999999999999999999988887654 3378
Q ss_pred EEEEEcCC-CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeE
Q 009266 207 NAIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (538)
Q Consensus 207 ~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (538)
.+++|+|. .+++|++|+.||.|++||+++++.. .....|...|.+++|+|++.+|++++ ++.|
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~---------------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v 264 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV---------------QAFETHESDVNSVRYYPSGDAFASGSDDATC 264 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE---------------EEecCCCCCeEEEEEeCCCCEEEEEeCCCeE
Confidence 99999885 2589999999999999999987532 23345788999999999999999998 6699
Q ss_pred EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC
Q 009266 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
++|+++.. .....+..+.....+.+++| +|++++|++|+.|
T Consensus 265 ~lwd~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~-s~~g~~l~~g~~d 305 (354)
T 2pbi_B 265 RLYDLRAD--------------------------------------REVAIYSKESIIFGASSVDF-SLSGRLLFAGYND 305 (354)
T ss_dssp EEEETTTT--------------------------------------EEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETT
T ss_pred EEEECCCC--------------------------------------cEEEEEcCCCcccceeEEEE-eCCCCEEEEEECC
Confidence 99998763 12223333322223788998 9999999999999
Q ss_pred CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
+.|+||++.+++.+..+.+|...|++++|+|++++||+|+.|++|+||+
T Consensus 306 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 306 YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999999999999999999999999996
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-46 Score=350.84 Aligned_cols=319 Identities=16% Similarity=0.231 Sum_probs=250.2
Q ss_pred eeeeeEEcCCcC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee--eeeccCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 51 LGIYAKLDKHRG-CVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 51 ~~~~~~~~~h~~-~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
+.++.++.+|.. .|++++|+|+|++||+|+.|++|+||++.++... ..+..+|...|++++|+| ++++|++++.|
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~D 82 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFD 82 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEETT
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEECC
Confidence 356788999988 9999999999999999999999999999887643 233468999999999999 99999999999
Q ss_pred CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
++|++|++..+.......+.+|...|.+++|+|++ ++|++++.|++|++|+++++.....+..... +...|.
T Consensus 83 ~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-------h~~~v~ 154 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNS-------HTQDVK 154 (345)
T ss_dssp SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECC-------CCSCEE
T ss_pred CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecC-------cCCCeE
Confidence 99999999877654455688999999999999999 7999999999999999988754333222111 444799
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEE
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~ 286 (538)
+++|+|+ +.+|++++.|+.|++|+++..+.. ......+|...|.+++|+|+|++|++++ ++.|++
T Consensus 155 ~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~-------------~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~i 220 (345)
T 3fm0_A 155 HVVWHPS-QELLASASYDDTVKLYREEEDDWV-------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220 (345)
T ss_dssp EEEECSS-SSCEEEEETTSCEEEEEEETTEEE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEECCC-CCEEEEEeCCCcEEEEEecCCCEE-------------EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999998 789999999999999999875421 1123445788999999999999999998 669999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec-cccceeeeEEEEecCCCcEEEEeccCC
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~~gs~dg 365 (538)
|+.........+.... .......+..+.+ |... |.+++| +|++.+|++++.|+
T Consensus 221 W~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~h~~~--v~~v~~-~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSG-----------------------SDPSWKCICTLSGFHSRT--IYDIAW-CQLTGALATACGDD 274 (345)
T ss_dssp EEEECTTCTTCCCCC--------------------------CEEEEEEEECSSCSSC--EEEEEE-CTTTCCEEEEETTS
T ss_pred eccccCCCCccceeec-----------------------cCCccceeEEecCCCCCc--EEEEEE-ecCCCEEEEEeCCC
Confidence 9976432221111000 0000122334444 5544 999999 99999999999999
Q ss_pred eEEEeeccCcce---------eEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCCCcc
Q 009266 366 RIFIWKKKGGEL---------IRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 366 ~i~iwd~~~~~~---------~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~~~ 419 (538)
.|++|+...+.. ...+.+|...|++++|+|+++ +||||+.||+|++|++.+++.
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 999999865431 122357899999999999985 999999999999999987654
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.6e-46 Score=343.16 Aligned_cols=296 Identities=20% Similarity=0.338 Sum_probs=255.9
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcE
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
+.+...+.+|...|++++|+|++++||+|+.||.|+||++.+++....+ .+|...|.+++|+| ++++|++++.++.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS--DSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcC--CCCEEEEECCCCEE
Confidence 3556788999999999999999999999999999999999999887776 79999999999999 99999999999999
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
++|++.+++.+.. +.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+..+ ..+|.+++
T Consensus 90 ~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~~v~~~~ 156 (312)
T 4ery_A 90 KIWDVSSGKCLKT--LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH----------SDPVSAVH 156 (312)
T ss_dssp EEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCC----------SSCEEEEE
T ss_pred EEEECCCCcEEEE--EcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCC----------CCcEEEEE
Confidence 9999998877655 78899999999999998 78999999999999999999887776543 33799999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeec
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (538)
|+|+ +.+|++++.+|.|++||+++++.. ......+...+..++|+|++++|++++ ++.|++|++
T Consensus 157 ~~~~-~~~l~~~~~d~~i~~wd~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 157 FNRD-GSLIVSSSYDGLCRIWDTASGQCL--------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp ECTT-SSEEEEEETTSCEEEEETTTCCEE--------------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EcCC-CCEEEEEeCCCcEEEEECCCCcee--------------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9997 789999999999999999886532 222334566899999999999999888 669999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEE
Q 009266 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (538)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~i 369 (538)
.+ ...+..+.+|..........+..+++++|++|+.||.|++
T Consensus 222 ~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 222 SK--------------------------------------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263 (312)
T ss_dssp TT--------------------------------------TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred CC--------------------------------------CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 86 3345566666554333334443578899999999999999
Q ss_pred eeccCcceeEEeecCcceeeEEeecCCCCeEEEee--cCCceEEecCC
Q 009266 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG--IESDIKILTPN 415 (538)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~v~vw~~~ 415 (538)
|++.+++++..+.+|...|.+++|+|++++|++++ .|++|++|+..
T Consensus 264 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999999997 69999999864
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.9e-46 Score=346.12 Aligned_cols=294 Identities=16% Similarity=0.225 Sum_probs=234.2
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+-|+|+|++|++++ ++++++|+............+ ..........|...|++++|+|++ .|++|+.||
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAP----------NEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTT----------CGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeeeccccccC----------CcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 34788999998887 889999986522111000000 000112223467889999999985 688999999
Q ss_pred eEEEEECCCCceeeee---ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 84 RVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
+|+||++.+++.+..+ ..+|...|++|+|+| ++++|++|+.|++|++|++.+++.+.. +.+|...|++++|+|
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKVWDLAQQVVLSS--YRAHAAQVTCVAASP 179 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECS
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCcCCceEEEEecC
Confidence 9999999998765433 358999999999999 999999999999999999998877765 889999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
++..+|++++.|++|++||+++++....+.... +...+.+++|+|.++++|++|+.||.|++||+++++
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--- 248 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA--------PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--- 248 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----
T ss_pred CCCCceeeeccccccccccccccceeeeeecce--------eeccceeeeecCCCCcceEEeccCCcEEEEECCCCc---
Confidence 987789999999999999999998877664322 333688999999878899999999999999987643
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
T Consensus 249 -------------------------------------------------------------------------------- 248 (344)
T 4gqb_B 249 -------------------------------------------------------------------------------- 248 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCC-cEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCC-
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST- 398 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~- 398 (538)
.+..+.+|... |++++| +|++ ++||+|+.|++|+|||+.+++++ .+.+|.+.|++++|+|+++
T Consensus 249 -----------~~~~~~~h~~~--v~~v~f-sp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 249 -----------CVLSSAVHSQC--VTGLVF-SPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp -----------CCEEEECCSSC--EEEEEE-CSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTT
T ss_pred -----------EEEEEcCCCCC--EEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCe
Confidence 23455667665 889998 9998 58999999999999999988765 5789999999999999987
Q ss_pred eEEEeecCCceEEecCCCCcc
Q 009266 399 VLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 399 ~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+|+|++.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 577999999999999976543
No 15
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-46 Score=358.49 Aligned_cols=333 Identities=14% Similarity=0.170 Sum_probs=271.2
Q ss_pred CCCCCCCc-eEEee----------ccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC
Q 009266 4 ASNNNNNK-RARTS----------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD 72 (538)
Q Consensus 4 a~~~~~~~-~l~t~----------~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 72 (538)
+-++|+++ +|++| +.|+.|+||++.++.... +...+ .|...|++++|+|+
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~------------------~~~~~-~~~~~v~~~~~s~~ 78 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK------------------PIASL-QVDSKFNDLDWSHN 78 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS------------------CSCCC-CCSSCEEEEEECSS
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc------------------EEEEE-ecCCceEEEEECCC
Confidence 34556665 99999 889999999999776321 12223 58899999999999
Q ss_pred CCEEEEecCCCeEEEEECCC---C-ceeeeeccCCCCCeEEEEEeecCC-CceEEEEeCCCcEEEeecccCc------ee
Q 009266 73 GDILISGSDDRRVILWDWKT---E-RVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERG------GV 141 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~---~-~~~~~~~~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~v~vwd~~~~~------~~ 141 (538)
+++|++|+.+|.|+||++.+ + +.+..+ .+|...|++++|+| + +.+|++++.++.|++|++.++. ..
T Consensus 79 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 79 NKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNA--KQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp SSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECS--SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcC--CCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 99999999999999999987 2 344444 78999999999999 7 8999999999999999998876 22
Q ss_pred ee-eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 142 ET-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 142 ~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
.. ..+..|...|.+++|+|++..+|++++.++.|++|++++++.+..+..+... .+ +...|.+++|+|++..+|+
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN--SG--IKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS--SC--CCCCEEEEEECSSCTTEEE
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc--cc--cCCceEEEEECCCCCCEEE
Confidence 21 2246799999999999995589999999999999999999887777643211 01 2457999999998667999
Q ss_pred EEeCCC---eEEEEEcCCccccCCCCCCCCCcccCCCCccC-CCccceEEEEEcC-CCCEEEEEc-CCeEEEeeccCCCC
Q 009266 221 VAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLG 294 (538)
Q Consensus 221 ~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~-~~~i~~~d~~~~~~ 294 (538)
+++.++ .|++|++++... +..... .|...|.+++|+| ++++|++++ ++.|++|++.+
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~--- 294 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANT--------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES--- 294 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTS--------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS---
T ss_pred EEECCCCCceEEEEeCCCCCC--------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC---
Confidence 999999 999999998531 223333 5788999999999 899999888 66999999887
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC-cEEEEeccCCeEEEeecc
Q 009266 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~l~~gs~dg~i~iwd~~ 373 (538)
...+..+.+|... |.+++| +|++ ++|++++.|+.|+||++.
T Consensus 295 -----------------------------------~~~~~~~~~~~~~--v~~~~~-s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 295 -----------------------------------AEQLSQFPARGNW--CFKTKF-APEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp -----------------------------------CCEEEEEECSSSC--CCCEEE-CTTCTTEEEECCSSSEEEEEESC
T ss_pred -----------------------------------CccceeecCCCCc--eEEEEE-CCCCCCEEEEEecCCcEEEEEcc
Confidence 3456777888876 899999 9999 899999999999999998
Q ss_pred CcceeEEee-----------------------------------cCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 374 GGELIRVIE-----------------------------------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 374 ~~~~~~~~~-----------------------------------~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
+++...... .|..++++++|+|+|++||+++.|+.|+||++.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 337 NLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 776433221 15677889999999999999999999999999864
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.3e-45 Score=337.69 Aligned_cols=293 Identities=15% Similarity=0.229 Sum_probs=243.3
Q ss_pred EeeeeeEEcCCcCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCC-----ceeeeeccCCCCCeEEEEEeecCCCceEEE
Q 009266 50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTE-----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVT 123 (538)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s 123 (538)
.+.+..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++... .++..+ .+|...|.+++|+| ++.+|++
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~--dg~~l~s 82 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTA--DGAYALS 82 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECC--CCCEEEE
Confidence 345678899999999999999965 89999999999999998643 233444 79999999999999 9999999
Q ss_pred EeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 124 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
++.|++|++|++.+++.+.. +.+|...|.+++|+|++ .+|++++.|++|++|+++. ..+..+.. +.
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~-~~~~~~~~----------h~ 148 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKG-QCLATLLG----------HN 148 (319)
T ss_dssp EETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTS-CEEEEECC----------CS
T ss_pred EeCCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CeEEEEec----------cC
Confidence 99999999999998877655 78999999999999998 6899999999999999974 34444433 34
Q ss_pred eeeEEEEEcCC-----CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEE
Q 009266 204 VNLNAIAIDPR-----NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (538)
Q Consensus 204 ~~v~~~~~~~~-----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 278 (538)
..|.+++|+|. ++.+|++++.|+.|++|++++.+. ......|...|.+++|+|+|++|++
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---------------EADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---------------EEEECCCCSCEEEEEECTTSSEEEE
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---------------heeecCCCCcEEEEEEcCCCCEEEE
Confidence 47999999985 234899999999999999987653 1223457889999999999999999
Q ss_pred Ec-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcE
Q 009266 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (538)
Q Consensus 279 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~ 357 (538)
++ ++.|++|++.+ ...+..+..+. .|.+++| +|++.+
T Consensus 214 ~~~dg~i~iwd~~~--------------------------------------~~~~~~~~~~~---~v~~~~~-sp~~~~ 251 (319)
T 3frx_A 214 AGKDGEIMLWNLAA--------------------------------------KKAMYTLSAQD---EVFSLAF-SPNRYW 251 (319)
T ss_dssp EETTCEEEEEETTT--------------------------------------TEEEEEEECCS---CEEEEEE-CSSSSE
T ss_pred EeCCCeEEEEECCC--------------------------------------CcEEEEecCCC---cEEEEEE-cCCCCE
Confidence 88 66999999986 33445555443 3899999 999999
Q ss_pred EEEeccCCeEEEeeccCcceeEEee--------cCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 358 VVSGSDCGRIFIWKKKGGELIRVIE--------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 358 l~~gs~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
|++++. ..|++|++..+..+..+. .|...+.+++|+|+|++|++|+.||.|+||++.++
T Consensus 252 la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 252 LAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 998875 459999998887776654 34567899999999999999999999999998653
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-44 Score=345.29 Aligned_cols=308 Identities=20% Similarity=0.280 Sum_probs=248.1
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCC------------------CCeEEEEEee
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN------------------DNVFQAKIMP 114 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~------------------~~v~~l~~~~ 114 (538)
+.+.+ +|...|++++|+|+|++||+|+ ++.++||++.+++.+..+ ..|. ..|++++|+|
T Consensus 57 ~~~~~-~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECT
T ss_pred eEEec-CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECC
Confidence 33444 5999999999999999999987 689999999999887666 3332 2499999999
Q ss_pred cCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeeccc
Q 009266 115 FTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (538)
Q Consensus 115 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (538)
++++|++|+.|++|+||++.+++.+.. +.+|...|.+++|+|++ .+|++++.|++|++||+++++....+..
T Consensus 134 --dg~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~--- 205 (393)
T 1erj_A 134 --DGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSI--- 205 (393)
T ss_dssp --TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEEC---
T ss_pred --CCCEEEEEcCCCeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEEc---
Confidence 999999999999999999998876654 88999999999999999 6899999999999999999987766652
Q ss_pred CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC
Q 009266 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (538)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (538)
...+.+++|+|.++.+|++|+.||.|++||+++++....... .......|...|.+++|+|+++
T Consensus 206 --------~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~--------~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 206 --------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS--------ENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp --------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECTTSS
T ss_pred --------CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc--------cccCCCCCCCCEEEEEECCCCC
Confidence 236899999995489999999999999999988754322110 1112245788999999999999
Q ss_pred EEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC
Q 009266 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (538)
Q Consensus 275 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~ 353 (538)
+|++++ ++.|++|++.+......... .........+.+|... |.+++| +|
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~--------------------------~~~~~~~~~~~~h~~~--v~~~~~-~~ 320 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKT--------------------------PNSGTCEVTYIGHKDF--VLSVAT-TQ 320 (393)
T ss_dssp EEEEEETTSEEEEEEC-----------------------------------------CEEEEEECCSSC--EEEEEE-CG
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccC--------------------------CCCCcceEEEecccCc--EEEEEE-CC
Confidence 999998 66999999976432211100 0012334567788876 899999 99
Q ss_pred CCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecC------CCCeEEEeecCCceEEecCCC
Q 009266 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 354 ~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~~~dg~v~vw~~~~ 416 (538)
++++|++|+.|+.|++|++.+++++..+.+|...|.+++|++ ++++||||+.||+|+||++..
T Consensus 321 ~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 321 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999999999999999999999999999999999876 688999999999999999764
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-45 Score=350.76 Aligned_cols=275 Identities=19% Similarity=0.324 Sum_probs=244.1
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.|+|++++|++|+.||+|+||++.++++. +.+.+|.+.|++++|+|++++|++|+.|++
T Consensus 115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 115 IFHPVFSVMVSASEDATIKVWDYETGDFE---------------------RTLKGHTDSVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp EECSSSSEEEEEESSSCEEEEETTTCCCC---------------------EEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------EEEeccCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 35678899999999999999999988764 678999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|+||++.+++++..+ .+|...|.+++|+| ++.+|++|+.|++|++|++.++.++.. +.+|...|.++.|+|++ .
T Consensus 174 i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g-~ 247 (410)
T 1vyh_C 174 IKLWDFQGFECIRTM-HGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDG-T 247 (410)
T ss_dssp CCEEETTSSCEEECC-CCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTS-S
T ss_pred EEEEeCCCCceeEEE-cCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCC-C
Confidence 999999998887777 79999999999999 999999999999999999999887765 78899999999999999 7
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCC-------------------CcEEEEEeCC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-------------------ANLFAVAGSD 225 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~l~~~~~d 225 (538)
+|++|+.|++|++|+++++++...+..+ ...|.+++|+|+. +.+|++|+.|
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D 317 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKECKAELREH----------RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCC----------SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred EEEEEcCCCeEEEEECCCCceeeEecCC----------CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence 9999999999999999999888776543 3379999999952 4689999999
Q ss_pred CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCcc
Q 009266 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVS 304 (538)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 304 (538)
+.|++||+++++.. ....+|...|.+++|+|+|++|++++ ++.|++|++.+
T Consensus 318 ~~i~iwd~~~~~~~---------------~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~------------- 369 (410)
T 1vyh_C 318 KTIKMWDVSTGMCL---------------MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN------------- 369 (410)
T ss_dssp SEEEEEETTTTEEE---------------EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT-------------
T ss_pred CeEEEEECCCCceE---------------EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------
Confidence 99999999987532 22345778999999999999999988 56899999876
Q ss_pred ccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
...+..+.+|... |++++| +|++.+|++|+.||+|+||++
T Consensus 370 -------------------------~~~~~~~~~h~~~--v~~l~~-~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 370 -------------------------KRCMKTLNAHEHF--VTSLDF-HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -------------------------SCCCEEEECCSSC--EEEEEE-CSSSSCEEEEETTSEEEEEC-
T ss_pred -------------------------CceEEEEcCCCCc--EEEEEE-cCCCCEEEEEeCCCcEEEEeC
Confidence 4456788889886 999999 999999999999999999986
No 19
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-44 Score=378.58 Aligned_cols=413 Identities=8% Similarity=0.014 Sum_probs=288.2
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.|+|++++||+|+.||+|+||+..++++. .. ..|...|++|+|+| |++|++++.|++
T Consensus 24 afspdg~~lAsgs~Dg~I~lw~~~~~~~~---------------------~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~ 80 (902)
T 2oaj_A 24 AFDFTQNLLAIATVTGEVHIYGQQQVEVV---------------------IK-LEDRSAIKEMRFVK-GIYLVVINAKDT 80 (902)
T ss_dssp EEETTTTEEEEEETTSEEEEECSTTCEEE---------------------EE-CSSCCCEEEEEEET-TTEEEEEETTCE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCcEEE---------------------EE-cCCCCCEEEEEEcC-CCEEEEEECcCe
Confidence 46789999999999999999998866543 22 34788999999999 889999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee---------eeccccCCCcEE
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---------KLLGKHQGRAHK 155 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~---------~~~~~~~~~v~~ 155 (538)
|+||++.+++++..+ .|...|++++|+| ++++|++|+.+|+|++|++.++..... ..+.+|...|++
T Consensus 81 v~lWd~~~~~~~~~~--~~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTV--FVPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp EEEEETTTCSEEEEE--ECSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred EEEEECCCCcEEEEE--cCCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 999999999988777 3778999999999 999999999999999999987765311 225679999999
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCC--------CcceeeeeEEEEEcCCCCcEEEEEeCCCe
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--------NYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 227 (538)
++|+|++..+|++|+.++.| +||+++++.+..+..+...... ...+...|.+++|+|+ +.+|++++.||+
T Consensus 157 l~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~~lasgs~Dg~ 234 (902)
T 2oaj_A 157 IQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHEDNS 234 (902)
T ss_dssp EEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SSEEEEEETTCC
T ss_pred EEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CCEEEEEECCCe
Confidence 99999754689999999999 9999999888777644110000 0013357999999998 799999999999
Q ss_pred EEEEEcCCccccCCCCC-----CCCCcccCCCCccCCCccceEEEEEc----CCC-CEEEEEcCC------eEEEee---
Q 009266 228 TRLYDIRKYKWDGSTDF-----GQPADYFCPPNLIGDEQVGITGLAFS----DQS-ELLVSYNDE------FIYLFT--- 288 (538)
Q Consensus 228 v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~-~~l~~~~~~------~i~~~d--- 288 (538)
|++||+++++......+ ..+.. ........+...|.+++|+ |++ .+|++++.+ .+++|+
T Consensus 235 i~lWd~~~g~~~~~r~l~~~~~~~~~~--~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 235 LVFWDANSGHMIMARTVFETEINVPQP--DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp EEEEETTTCCEEEEECSSCSCTTSCCT--TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred EEEEECCCCcEEEEEeecccccCCCCC--cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence 99999988764321000 00000 0000000123456666664 332 344444321 455554
Q ss_pred --------------------------------------------------------------------ccCCCCCCC---
Q 009266 289 --------------------------------------------------------------------QDMGLGPNP--- 297 (538)
Q Consensus 289 --------------------------------------------------------------------~~~~~~~~~--- 297 (538)
+.++.....
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence 322210000
Q ss_pred ----CCCCCcccc--------------------------------ccccccCCCCccccCCCCCCCCccc-----CC---
Q 009266 298 ----PPSSPVSTR--------------------------------SEASEMGSDHTSAASPSTANTDVRI-----AP--- 333 (538)
Q Consensus 298 ----~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--- 333 (538)
+........ .....+.+++..++..+.+.+.+.. .+
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~ 472 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN 472 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT
T ss_pred CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC
Confidence 000000000 0001122333344443333322211 11
Q ss_pred ceee---------ccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc----------------------------
Q 009266 334 QVYK---------GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE---------------------------- 376 (538)
Q Consensus 334 ~~~~---------~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~---------------------------- 376 (538)
..+. +|... |.+|+| +|++++||+|+.||+|+||++.+++
T Consensus 473 ~~~~~~l~~~~~~~h~~~--V~svaf-spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (902)
T 2oaj_A 473 ASFEVNLSRTLNKAKELA--VDKISF-AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549 (902)
T ss_dssp BCEEEEHHHHTTCSSSCC--EEEEEE-ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred ceEEeechhhcCCCCCCc--eeEEEe-cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence 1121 45554 999999 9999999999999999999998763
Q ss_pred -----------------eeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc------cccC-ccceeeeec
Q 009266 377 -----------------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR------ATLP-TNIEQVLIP 432 (538)
Q Consensus 377 -----------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~------~~~~-~~~~~~~~~ 432 (538)
++..+.+|.+.|++|+|||+| +||+|+.|++|+||++.++.. ..+. +|...|.++
T Consensus 550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv 628 (902)
T 2oaj_A 550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCI 628 (902)
T ss_dssp EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEE
T ss_pred cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEE
Confidence 367788999999999999999 999999999999999987644 2443 787777665
Q ss_pred c-------cC----ceeeeccCCCCCceeec
Q 009266 433 D-------HI----RWFALGDDDDGDYYFYD 452 (538)
Q Consensus 433 ~-------~~----~~l~s~~~d~~~~~~~~ 452 (538)
. ++ .+|++++.|++.+.|.-
T Consensus 629 ~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 629 EFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 5 33 39999999999998864
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.7e-44 Score=336.93 Aligned_cols=297 Identities=15% Similarity=0.218 Sum_probs=238.7
Q ss_pred EEeeeeeEEcCCcCcEEEEEE-----cC-CCCEEEEecCCCeEEEEECCCCc-------eeeeeccCCCCCeEEEEEeec
Q 009266 49 LRLGIYAKLDKHRGCVNTVSF-----NT-DGDILISGSDDRRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPF 115 (538)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~-----s~-~g~~l~t~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~v~~l~~~~~ 115 (538)
..+.+...|++|.+.|++++| +| ++++||||+.|++|+||++.+++ +... +.+|...|++++|+|
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~~~- 86 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA-LTGHNHFVSDLALSQ- 86 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEE-ECCCSSCEEEEEECS-
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccch-hccCCCceEEEEECC-
Confidence 445667889999999999999 77 89999999999999999987542 3333 479999999999999
Q ss_pred CCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccC
Q 009266 116 TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (538)
Q Consensus 116 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (538)
++.+|++++.|++|++|++.+++.+.. +.+|...|.+++|+|++ .+|++++.|++|++|++.... .......
T Consensus 87 -~~~~l~s~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~-~~~~~~~--- 158 (343)
T 2xzm_R 87 -ENCFAISSSWDKTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGEC-KFSSAEK--- 158 (343)
T ss_dssp -STTEEEEEETTSEEEEEETTSSCEEEE--EECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCE-EEECCTT---
T ss_pred -CCCEEEEEcCCCcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCc-eeeeecc---
Confidence 999999999999999999998877655 78899999999999999 689999999999999997432 2221111
Q ss_pred CCCCcceeeeeEEEEEcCCC---------CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEE
Q 009266 196 DRRNYMTVVNLNAIAIDPRN---------ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (538)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~---------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (538)
.+ +...|.+++|+|.+ +.+|++++.||.|++|+..... ......|...|.+
T Consensus 159 --~~--~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 159 --EN--HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI----------------RYTFKAHESNVNH 218 (343)
T ss_dssp --TS--CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE----------------EEEEECCSSCEEE
T ss_pred --cC--CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce----------------eEEEcCccccceE
Confidence 11 44579999999973 1689999999999999954321 1233456789999
Q ss_pred EEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceee
Q 009266 267 LAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (538)
Q Consensus 267 ~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (538)
++|+|+|++|++++ ++.|++|++... ......+. +.. .|
T Consensus 219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~-------------------------------------~~~~~~~~-~~~--~v 258 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDKKLLIWDILNL-------------------------------------TYPQREFD-AGS--TI 258 (343)
T ss_dssp EEECTTSSEEEEEETTCEEEEEESSCC-------------------------------------SSCSEEEE-CSS--CE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC-------------------------------------cccceeec-CCC--cE
Confidence 99999999999998 669999998542 11222232 222 38
Q ss_pred eEEEEecCCCcEEEEeccCCeEEEeeccCcceeE--Eee-----------cCcceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR--VIE-----------ADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 346 ~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
.+++| +|++++|+++ .++.|++|++.+++... .+. +|...|++++|+|++++||+|+.||.|++|
T Consensus 259 ~~v~~-sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 259 NQIAF-NPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEE-CSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEE-CCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 99999 9999988765 57889999998876544 443 677889999999999999999999999999
Q ss_pred cCCCC
Q 009266 413 TPNAA 417 (538)
Q Consensus 413 ~~~~~ 417 (538)
++.++
T Consensus 337 ~~~~g 341 (343)
T 2xzm_R 337 SFETS 341 (343)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 98654
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-44 Score=348.16 Aligned_cols=324 Identities=10% Similarity=0.090 Sum_probs=262.9
Q ss_pred CCCCCCc-eEEeeccCCceEEeee----ccCceeccccchhhcccccceEEeeeee------EEcCCcCcEEEEEEcCCC
Q 009266 5 SNNNNNK-RARTSVDKALVDVWLR----ELGQLSTRNFALRRRASEDLVLRLGIYA------KLDKHRGCVNTVSFNTDG 73 (538)
Q Consensus 5 ~~~~~~~-~l~t~~~d~~v~iwd~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~v~~~~~s~~g 73 (538)
-++|+++ +|++|+.+|.|+||++ .+++.+... .....+.. ...+|.+.|++++|+|++
T Consensus 52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKL-----------TIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EECSSCTTEEEEEETBTEEEEEEEEEC------CEEE-----------EEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred EECCCCCcEEEEecCCceEEEEEEecccCCccccccc-----------cccccccccccccccccCCCCceEEEEEcCCC
Confidence 3667888 9999999999999999 877731000 00001111 123378899999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC-
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR- 152 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~- 152 (538)
++|++|+.+|.|++|+ .+++.+..+ .+|...|.+++|+| ++.+|++++.++.|++|++.+++.+.. +..+...
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~ 194 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQH--FELKETGG 194 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEE--ECCC----
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEE--eeccccCc
Confidence 9999999999999999 567776666 78999999999999 999999999999999999998877655 5555555
Q ss_pred --------------cEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 153 --------------AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 153 --------------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
+.+++|+|++ .+++++.++.|++|++++++.+..+.. +...|.+++|+|+ +.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~ 261 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIG----------HHGPISVLEFNDT-NKL 261 (425)
T ss_dssp -----------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECC----------CSSCEEEEEEETT-TTE
T ss_pred cceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeecc----------CCCceEEEEECCC-CCE
Confidence 9999999976 588999999999999999887776654 3347999999997 789
Q ss_pred EEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCC
Q 009266 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP 297 (538)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 297 (538)
|++++.+|.|++|++++++. ......|...|.+++|+|++ +|++++ ++.|++|++.+
T Consensus 262 l~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~------ 319 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNS---------------QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ------ 319 (425)
T ss_dssp EEEEETTSCEEEECSSSBSC---------------SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT------
T ss_pred EEEEcCCCEEEEEECCCCcc---------------ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC------
Confidence 99999999999999988652 22334467899999999999 666666 77999999976
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc-
Q 009266 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE- 376 (538)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~- 376 (538)
...+..+..|... +.+++| +|++++|++++.+|.|++|++.+++
T Consensus 320 --------------------------------~~~~~~~~~~~~~--i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~~~~ 364 (425)
T 1r5m_A 320 --------------------------------NTLLALSIVDGVP--IFAGRI-SQDGQKYAVAFMDGQVNVYDLKKLNS 364 (425)
T ss_dssp --------------------------------TEEEEEEECTTCC--EEEEEE-CTTSSEEEEEETTSCEEEEECHHHHC
T ss_pred --------------------------------CcEeEecccCCcc--EEEEEE-cCCCCEEEEEECCCeEEEEECCCCcc
Confidence 3455667777765 899999 9999999999999999999999888
Q ss_pred -------------------eeEEeecCcc--eeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 377 -------------------LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 377 -------------------~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
++..+.+|.. .|++++|+|++++|++++.||.|++|++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 365 KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8899999976 99999999999999999999999999986
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-44 Score=333.11 Aligned_cols=272 Identities=20% Similarity=0.301 Sum_probs=239.3
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
++.+|+||+.|++|+||++.+++.. +...+.+|...|.+++|+|++.+|++++.|++|+||
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~-------------------~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLD-------------------LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEE-------------------EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCCEEEEEcCCCCEEEEECCCCCee-------------------eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 5779999999999999999866542 245789999999999999999999999999999999
Q ss_pred ECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEE
Q 009266 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (538)
++.+++.+..+ ..|...+.+++|+| ++++|++++.+|.|++|++.+++.... +..|...|.+++|+|++ ++|++
T Consensus 108 d~~~~~~~~~~-~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~~~~~v~~~~~spdg-~~las 181 (321)
T 3ow8_A 108 DLENGKQIKSI-DAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYS--LDTRGKFILSIAYSPDG-KYLAS 181 (321)
T ss_dssp ETTTTEEEEEE-ECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEE--EECSSSCEEEEEECTTS-SEEEE
T ss_pred ECCCCCEEEEE-eCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEE--ecCCCceEEEEEECCCC-CEEEE
Confidence 99999988777 67888999999999 999999999999999999998877655 67788899999999999 78999
Q ss_pred EcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCC
Q 009266 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (538)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (538)
++.|+.|++||+++++.+..+..+ ..+|.+++|+|+ +.+|++|+.|+.|++|++++++.
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h----------~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~---------- 240 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGH----------AMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANL---------- 240 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCC----------SSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCE----------
T ss_pred EcCCCeEEEEECCCCcEEEEEccc----------CCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcce----------
Confidence 999999999999999888777643 347999999997 78999999999999999987653
Q ss_pred cccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCC
Q 009266 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
......|...|.+++|+|++++|++++ ++.|++|++.+
T Consensus 241 -----~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~------------------------------------ 279 (321)
T 3ow8_A 241 -----AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT------------------------------------ 279 (321)
T ss_dssp -----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------------------------------------
T ss_pred -----eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC------------------------------------
Confidence 223445788999999999999999988 66999999987
Q ss_pred CcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
...+..+.+|... |.+++| +|++++|++++.||.|+||++
T Consensus 280 --~~~~~~~~~h~~~--v~~v~~-s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 280 --RTCVHTFFDHQDQ--VWGVKY-NGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp --TEEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTCCEEEEEC
T ss_pred --CEEEEEEcCCCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEeC
Confidence 4566778888876 999999 999999999999999999996
No 23
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.8e-44 Score=363.11 Aligned_cols=394 Identities=16% Similarity=0.151 Sum_probs=302.9
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccC----ceeccccchhhcccccceEEeeeeeEEcCCcCc-EEEEEEcC--CCCEE
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELG----QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-VNTVSFNT--DGDIL 76 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~--~g~~l 76 (538)
..++|++++|++++ ++.|+||++.++ +. ...+.+|... |++++|+| ++++|
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~---------------------~~~~~~h~~~~v~~~~~sp~~~~~~l 81 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPP---------------------VVQFTGHGSSVVTTVKFSPIKGSQYL 81 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCS---------------------EEEECTTTTSCEEEEEECSSTTCCEE
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCcccc---------------------ceEEecCCCceEEEEEECcCCCCCEE
Confidence 34678999999998 889999999977 44 4678999999 99999999 99999
Q ss_pred EEecCCCeEEEEECCCC--------ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC----CcEEEeecccCceeeee
Q 009266 77 ISGSDDRRVILWDWKTE--------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETK 144 (538)
Q Consensus 77 ~t~~~d~~i~iw~~~~~--------~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~ 144 (538)
|+|+.||.|+||++.++ +.+..+ ..|...|.+++|+| ++++|++++.+ +.|++|+ .++.+.
T Consensus 82 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~-- 154 (615)
T 1pgu_A 82 CSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLG-- 154 (615)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEE--
T ss_pred EEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcce--
Confidence 99999999999999755 444444 78999999999999 99999999987 7899998 344444
Q ss_pred eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC
Q 009266 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 224 (538)
.+.+|...|.+++|+|+++.+|++++.++.|++|++.+++.+..+..+.. ....|.+++|+|+++.+|++++.
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK-------QGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC-------TTCCEEEEEECSTTCCEEEEEET
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC-------CCceEEEEEECCCCCCEEEEEeC
Confidence 37889999999999999966899999999999999999888777654321 01169999999974689999999
Q ss_pred CCeEEEEEcCCccccCCCCCCCCCcccCCCCccC---CCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCC
Q 009266 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG---DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPS 300 (538)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~ 300 (538)
+|.|++|++++++... .+.. .|...|.+++|+ ++++|++++ ++.|++|++.++.....+..
T Consensus 228 dg~i~vwd~~~~~~~~--------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 228 DRKISCFDGKSGEFLK--------------YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp TCCEEEEETTTCCEEE--------------ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEECCCCCEeE--------------EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 9999999998876322 1112 567899999999 999998888 66999999987653322221
Q ss_pred CCc---------------------------------------------ccc-----------------------------
Q 009266 301 SPV---------------------------------------------STR----------------------------- 306 (538)
Q Consensus 301 ~~~---------------------------------------------~~~----------------------------- 306 (538)
... ...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 293 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCC
T ss_pred CCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCccc
Confidence 100 000
Q ss_pred --ccccccCCCCccccCCCCC-----------------------------------------------------------
Q 009266 307 --SEASEMGSDHTSAASPSTA----------------------------------------------------------- 325 (538)
Q Consensus 307 --~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 325 (538)
.....+ +....++.....
T Consensus 373 ~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (615)
T 1pgu_A 373 NLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 451 (615)
T ss_dssp SCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred CceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceE
Confidence 000000 001111110000
Q ss_pred ---------------CCCc------ccCC-ceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeec
Q 009266 326 ---------------NTDV------RIAP-QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (538)
Q Consensus 326 ---------------~~~~------~~~~-~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 383 (538)
.... .... ..+.+|... |.+++| +|++++|++|+.||.|++|++.+++++..+.+
T Consensus 452 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--v~~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 528 (615)
T 1pgu_A 452 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK--PSYISI-SPSETYIAAGDVMGKILLYDLQSREVKTSRWA 528 (615)
T ss_dssp EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred EEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCc--eEEEEE-CCCCCEEEEcCCCCeEEEeeCCCCcceeEeec
Confidence 0000 0000 223344444 889999 99999999999999999999999999999988
Q ss_pred -CcceeeEEeecC----------CCCeEEEeecCCceEEecCCCC--cccccCccceeeeecc--cCceeeeccCCCCCc
Q 009266 384 -DRHVVNCIEPHP----------HSTVLASSGIESDIKILTPNAA--DRATLPTNIEQVLIPD--HIRWFALGDDDDGDY 448 (538)
Q Consensus 384 -h~~~v~~~~~s~----------~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~ 448 (538)
|...|++++|+| ++++||+++.||.|++|++.++ ....+.+|...+..+. +++.|++++.++..+
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~ 608 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIK 608 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEE
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCCeEEecCCceEE
Confidence 999999999999 9999999999999999999986 3456778888888776 444599999999988
Q ss_pred eeec
Q 009266 449 YFYD 452 (538)
Q Consensus 449 ~~~~ 452 (538)
.|.-
T Consensus 609 iw~~ 612 (615)
T 1pgu_A 609 RWNV 612 (615)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8854
No 24
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.5e-44 Score=390.09 Aligned_cols=400 Identities=15% Similarity=0.148 Sum_probs=311.5
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.++|++++|++|+.||+|+||++.+++.+ ..+.+|.+.|++++|+|+|++||+|+.|++
T Consensus 622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 680 (1249)
T 3sfz_A 622 CFSQDGQRIASCGADKTLQVFKAETGEKL---------------------LDIKAHEDEVLCCAFSSDDSYIATCSADKK 680 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCEE---------------------EEeccCCCCEEEEEEecCCCEEEEEeCCCe
Confidence 36789999999999999999999988764 668899999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|+||++.+++.+..+ .+|...|.+++|+|..++.++++++.++.|++|++.++..+.. +.+|...|++++|+|++ .
T Consensus 681 v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~sp~~-~ 756 (1249)
T 3sfz_A 681 VKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT--MFGHTNSVNHCRFSPDD-E 756 (1249)
T ss_dssp EEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE--ECCCSSCEEEEEECSST-T
T ss_pred EEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe--ecCCCCCEEEEEEecCC-C
Confidence 999999999988887 7899999999999944456899999999999999999887765 78899999999999999 6
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCC---------------------------------------------CC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR---------------------------------------------RN 199 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------------------------------------~~ 199 (538)
+|++++.||.|++|++++++....+........ ..
T Consensus 757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~ 836 (1249)
T 3sfz_A 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 836 (1249)
T ss_dssp EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc
Confidence 899999999999999998876554432110000 00
Q ss_pred cceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE
Q 009266 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (538)
Q Consensus 200 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (538)
..+...|.+++|+|+ +.++++++.+|.|++|++.+++. ......|...|.+++|+|+|++|+++
T Consensus 837 ~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~~~---------------~~~~~~h~~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRLK---------------VADCRGHLSWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp CSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTTEE---------------EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCce---------------eeecCCCccceEEEEECCCCCEEEEE
Confidence 013457888999997 78999999999999999987653 22334578899999999999999988
Q ss_pred c-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCC---CcccCCceeeccccceeeeEEEEecCCC
Q 009266 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT---DVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (538)
Q Consensus 280 ~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 355 (538)
+ ++.|++|++........+.... .......+....+........ ...........+.. .+.+++| +|++
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~-sp~g 973 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQ----EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA--QVSCCCL-SPHL 973 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEE----EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS--CEEEEEE-CTTS
T ss_pred eCCCeEEEEEccccceeeeecccc----eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC--cEEEEEE-cCCC
Confidence 8 6699999987543222211000 000000000000000000000 00000111111222 3889998 9999
Q ss_pred cEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceeeeecc--
Q 009266 356 EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVLIPD-- 433 (538)
Q Consensus 356 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~-- 433 (538)
+++++|+.+|.|++|++.+++.+..+.+|...|++++|+|++++|++++.||.|++|++.+++...+..|...+..+.
T Consensus 974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~ 1053 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1053 (1249)
T ss_dssp SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999998888888888888776
Q ss_pred cCceeeeccCCCCCceeec
Q 009266 434 HIRWFALGDDDDGDYYFYD 452 (538)
Q Consensus 434 ~~~~l~s~~~d~~~~~~~~ 452 (538)
+++.+++++.++..+.|..
T Consensus 1054 ~~~~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 1054 QDSRLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp SSSEEEEEESSSEEEEEET
T ss_pred CCCcEEEEECCCcEEEEEC
Confidence 6778999999998777743
No 25
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.3e-43 Score=330.00 Aligned_cols=274 Identities=21% Similarity=0.270 Sum_probs=235.1
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
++|++++|++|+.||+|+||++.+++.+ ..+..|...|.+++|+|++++|++|+.|+.|
T Consensus 63 ~s~d~~~l~s~s~Dg~v~iWd~~~~~~~---------------------~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 63 WGTDSRLLLSASQDGKLIIWDSYTTNKV---------------------HAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEE---------------------EEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCcc---------------------eEeecCCccEEEEEECCCCCEEEEEeCCCeE
Confidence 5789999999999999999999988764 5678899999999999999999999999999
Q ss_pred EEEECCCCce---eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 86 ILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 86 ~iw~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
++|++.++.. ....+.+|...|.+++|++ ++ .|++++.|++|++|++.++..+.. +.+|...|.+++|+|++
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEE--EcCCCCceEEEEECCCC
Confidence 9999987642 2233478999999999998 66 489999999999999998877655 78999999999999998
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
.+|++|+.|+.|++||++++.....+..+ ...|.+++|+|+ +.+|++|+.||+|++||+++.+.....
T Consensus 197 -~~l~sg~~d~~v~~wd~~~~~~~~~~~~h----------~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 197 -RLFVSGACDASAKLWDVREGMCRQTFTGH----------ESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp -SEEEEEETTSCEEEEETTTCSEEEEECCC----------SSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred -CEEEEEeCCCcEEEEECCCCeeEEEEcCC----------cCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 69999999999999999999888777643 347999999997 799999999999999999886532110
Q ss_pred CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
....+...|.+++|+|+|++|++++ ++.|++|++.+
T Consensus 265 -------------~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~------------------------------ 301 (340)
T 1got_B 265 -------------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK------------------------------ 301 (340)
T ss_dssp -------------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT------------------------------
T ss_pred -------------ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc------------------------------
Confidence 0112235799999999999999988 56999999876
Q ss_pred CCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
......+.+|... |.+++| +|+|++||+|+.|+.|+||+
T Consensus 302 --------~~~~~~~~~h~~~--v~~~~~-s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 302 --------ADRAGVLAGHDNR--VSCLGV-TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------CCEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSCEEEEC
T ss_pred --------CcEeeEeecCCCc--EEEEEE-cCCCCEEEEEcCCccEEecC
Confidence 3456778899887 999999 99999999999999999996
No 26
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-43 Score=329.73 Aligned_cols=302 Identities=15% Similarity=0.182 Sum_probs=227.6
Q ss_pred eeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccC-CCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~--~~~~~~~~-~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
++++.+++|.+.|++++|+|+ +||+|+.|++|+||++.++. .+..+..+ |...|++++|+| ++.+|++++.|+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~s~D~ 80 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HTSLLAAGSFDS 80 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT--TSSEEEEEETTS
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC--CCCEEEEEeCCC
Confidence 456789999999999999987 99999999999999998753 33334234 999999999999 999999999999
Q ss_pred cEEEeecccCc-----eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC-C---eeeeeeecccCCCCC
Q 009266 129 QVRHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-A---ATELFTCRPIDDRRN 199 (538)
Q Consensus 129 ~v~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~---~~~~~~~~~~~~~~~ 199 (538)
+|+||++.... ......+.+|...|.+++|+|++ ++|++|+.|++|++|+++.. . ++..+..
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-------- 151 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQE-------- 151 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECC--------
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEecc--------
Confidence 99999985421 12234478999999999999998 79999999999999999543 2 2333332
Q ss_pred cceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC--CCEEE
Q 009266 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLV 277 (538)
Q Consensus 200 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~ 277 (538)
|...|.+++|+|+ +.+|++++.|++|++|+++.+.. ........|...|.+++|+|+ +.+|+
T Consensus 152 --h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 152 --HSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDW-------------ECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp --CSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred --CCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCe-------------eEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 3447999999997 78999999999999999876421 012334567889999999998 67888
Q ss_pred EEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec-cccceeeeEEEEecCCC
Q 009266 278 SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKC 355 (538)
Q Consensus 278 ~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~~~ 355 (538)
+++ ++.|++|++..+..... ........+.+ |... |.+++| ++++
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~------------------------------~~~~~~~~~~~~h~~~--v~~v~~-s~~~ 262 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQ------------------------------QEWVCEAILPDVHKRQ--VYNVAW-GFNG 262 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSC------------------------------EEEEEEEECCSCCSSC--EEEEEE-CTTS
T ss_pred EEeCCCeEEEEEecCCCcccc------------------------------ceeEEeeecccccccc--eEEEEE-cCCC
Confidence 887 66999999875321100 00112233333 6555 999999 8665
Q ss_pred cEEEEeccCCeEEEeeccCcc--eeE-EeecCcc-eeeEEeecC--CCCeEEEeecCCceEEecCCC
Q 009266 356 EYVVSGSDCGRIFIWKKKGGE--LIR-VIEADRH-VVNCIEPHP--HSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 356 ~~l~~gs~dg~i~iwd~~~~~--~~~-~~~~h~~-~v~~~~~s~--~~~~l~s~~~dg~v~vw~~~~ 416 (538)
+|++++.||.|+||+..+++ ++. .+.+|.. .|++++|+| ++++||+|+.||+|+||++..
T Consensus 263 -~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 -LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred -EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 89999999999999998774 333 3367876 899999999 688999999999999999864
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-43 Score=387.33 Aligned_cols=419 Identities=19% Similarity=0.232 Sum_probs=326.6
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccc-----------cch------hhcccccceEEe------eeeeEEcCCc
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRN-----------FAL------RRRASEDLVLRL------GIYAKLDKHR 61 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~-----------~~~------~~~~~~~~~~~~------~~~~~~~~h~ 61 (538)
-++|++++|++++.|++|+||++.+++++... |.+ +++++.++.+++ .....+.+|.
T Consensus 664 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 36788999999999999999999998876542 211 445566666655 5677889999
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee-------------------------------------------
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLS------------------------------------------- 98 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~------------------------------------------- 98 (538)
..|++++|+|++++|++++.||.|++|++.+++....
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~ 823 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 823 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence 9999999999999999999999999999876643222
Q ss_pred -----------eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEE
Q 009266 99 -----------FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (538)
Q Consensus 99 -----------~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (538)
+..+|...|.+++|+| ++.++++++.+|.|++|++.++..+.. +.+|...|++++|+|++ .+|+
T Consensus 824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg-~~l~ 898 (1249)
T 3sfz_A 824 FDIHTSGLLAEIHTGHHSTIQYCDFSP--YDHLAVIALSQYCVELWNIDSRLKVAD--CRGHLSWVHGVMFSPDG-SSFL 898 (1249)
T ss_dssp EETTTCCEEEEEECSSSSCCCEEEECS--STTEEEEECSSSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SEEE
T ss_pred EEecCCCceeEEcCCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCceeee--cCCCccceEEEEECCCC-CEEE
Confidence 2237888999999999 999999999999999999998877655 78999999999999999 6899
Q ss_pred EEcCCCcEEEEecCCCCe-----------------------------------------------e--------------
Q 009266 168 TCGEDGLVQHFDLRTGAA-----------------------------------------------T-------------- 186 (538)
Q Consensus 168 s~~~dg~i~iwd~~~~~~-----------------------------------------------~-------------- 186 (538)
+++.|+.|++|++.+... +
T Consensus 899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 978 (1249)
T 3sfz_A 899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978 (1249)
T ss_dssp EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE
Confidence 999999999999653100 0
Q ss_pred -------eeeeecccCC-CCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccC
Q 009266 187 -------ELFTCRPIDD-RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (538)
Q Consensus 187 -------~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
..+....... .....+...|.+++|+|+ +++|++++.||.|++|++.+++.. ...
T Consensus 979 g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~----------------~~~ 1041 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTGDYV----------------FLQ 1041 (1249)
T ss_dssp EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTTEEE----------------CCB
T ss_pred EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCceE----------------EEe
Confidence 0000000000 000124557899999998 789999999999999999987632 123
Q ss_pred CCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC------CCcccC
Q 009266 259 DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN------TDVRIA 332 (538)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 332 (538)
.|...|.+++|+|++.+++++.++.|++|++.++.....+..+... .....+++++..++..+.+. ......
T Consensus 1042 ~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~ 1119 (1249)
T 3sfz_A 1042 AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT--VLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119 (1249)
T ss_dssp CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSC--CCCEEECSSSSSCEEECCSSCCCEECSSSSSC
T ss_pred cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCc--EEEEEECCCCCEEEEEcCCCcEEEEECCCcce
Confidence 4678899999999988877777899999999988766555443333 23344566666666554433 233556
Q ss_pred CceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEe---------ecCcceeeEEeecCCCCeEEEe
Q 009266 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI---------EADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 333 ~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
...+.+|... |.+++| +|+|++||+|+.||.|++|++.+++++..+ .+|.+.|++++|+|++++|+++
T Consensus 1120 ~~~l~~h~~~--v~~~~~-s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1120 LHELKGHNGC--VRCSAF-SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp SBCCCCCSSC--EEEEEE-CSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred eeeeccCCCc--EEEEEE-CCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC
Confidence 6778888886 999999 999999999999999999999999887765 6788999999999999999998
Q ss_pred ecCCceEEecCCCCcc-cccCccceeeeecc--cCc-eeeeccCCCCCceeec
Q 009266 404 GIESDIKILTPNAADR-ATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYFYD 452 (538)
Q Consensus 404 ~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~~~ 452 (538)
+ |.|++|++.+++. ..+..|...+..+. +++ +|++++.+|..+.|.-
T Consensus 1197 ~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1197 G--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp S--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred C--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 6 8999999998876 45556777776655 666 9999999998888753
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-43 Score=327.94 Aligned_cols=290 Identities=18% Similarity=0.210 Sum_probs=234.2
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+|.+..+++|++|+.|++|++|++.+.... ...+++.+++|...|++++|+|++++|++|+.|+
T Consensus 24 ~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 24 ATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 556666789999999999999999743321 1134578899999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC-
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS- 162 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 162 (538)
+|+||++.+++.+..+ .+|...|.+++|+| ++.+|++++.|++|++|++.. ..+. .+.+|...|.+++|+|..
T Consensus 88 ~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~--~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 88 TLRLWDVATGETYQRF-VGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLA--TLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEE--EECCCSSCEEEEEECCC--
T ss_pred EEEEEECCCCCeeEEE-ccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEE--EEeccCCcEEEEEEccCCC
Confidence 9999999999988777 79999999999999 999999999999999999964 3433 377899999999999854
Q ss_pred ----CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccc
Q 009266 163 ----PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (538)
Q Consensus 163 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 238 (538)
..+|++++.|+.|++|++++.+....+.. |...|.+++|+|+ +.+|++++.||.|++||+++++.
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----------h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG----------HNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECC----------CCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecC----------CCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcE
Confidence 24799999999999999998877766654 3447999999997 79999999999999999998763
Q ss_pred cCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcc
Q 009266 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
... + . +...|.+++|+|++.+|+++..+.+++|++........+.
T Consensus 231 ~~~--------------~-~-~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~------------------- 275 (319)
T 3frx_A 231 MYT--------------L-S-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR------------------- 275 (319)
T ss_dssp EEE--------------E-E-CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEEC-------------------
T ss_pred EEE--------------e-c-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccC-------------------
Confidence 211 1 1 2357999999999999999998899999987532111100
Q ss_pred ccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc
Q 009266 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
.........|... +.+++| +|+|++|++|+.||.|+||++.++
T Consensus 276 -----------~~~~~~~~~~~~~--v~~~~~-spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 276 -----------PEFAGYSKAAEPH--AVSLAW-SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp -----------CCCTTCCGGGCCC--EEEEEE-CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred -----------ccccccccCcCcc--eeEEEE-CCCCCEEEEeecCceEEEEEEeec
Confidence 0000111223333 889999 999999999999999999998764
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.2e-43 Score=328.85 Aligned_cols=315 Identities=15% Similarity=0.156 Sum_probs=263.3
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-++|++++++++...+.+.+|....... .....+|...|++++|+|++++|++++ +|.
T Consensus 16 ~~s~dg~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~ 73 (337)
T 1gxr_A 16 HVTADGQMQPVPFPPDALIGPGIPRHAR---------------------QINTLNHGEVVCAVTISNPTRHVYTGG-KGC 73 (337)
T ss_dssp EECSSSCEEECCCCTTSSSSTTCCSEEE---------------------EEEEECCSSCCCEEEECSSSSEEEEEC-BSE
T ss_pred EECCCCCEEEeecCCCcEeccccCCccc---------------------cceeccCCCceEEEEEecCCcEEEEcC-CCe
Confidence 4678999999888888777776553222 123347999999999999999999999 999
Q ss_pred EEEEECCCCceeeeec----cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 85 VILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
|++|++.++.....+. .+|...|.+++|+| ++++|++++.++.|++|++.+++......+..|...|.+++|+|
T Consensus 74 i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151 (337)
T ss_dssp EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT
T ss_pred EEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC
Confidence 9999998876433331 27899999999999 99999999999999999999887555555788999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
++ .+|++++.++.|++|++++++.+..+..+ ...+.+++|+|+ +.+|++++.+|.|++|++++++...
T Consensus 152 ~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~----------~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~ 219 (337)
T 1gxr_A 152 DS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGH----------TDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQ 219 (337)
T ss_dssp TS-SEEEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CC-CEEEEEeCCCcEEEEeCCCCceeeeeecc----------cCceEEEEECCC-CCEEEEEecCCcEEEEECCCCceEe
Confidence 98 68999999999999999998877776543 337999999997 7899999999999999999876321
Q ss_pred CCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccc
Q 009266 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (538)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
. ..+...+.+++|+|++++|++++ ++.|++|++.+.
T Consensus 220 ~----------------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~--------------------------- 256 (337)
T 1gxr_A 220 Q----------------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--------------------------- 256 (337)
T ss_dssp E----------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS---------------------------
T ss_pred e----------------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---------------------------
Confidence 1 12456799999999999999888 669999998763
Q ss_pred cCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCe
Q 009266 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 399 (538)
....+..|... +.+++| +|++++|++++.+|.|++|++.+++.+... .|...|++++|+|++++
T Consensus 257 ------------~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~ 320 (337)
T 1gxr_A 257 ------------DKYQLHLHESC--VLSLKF-AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKY 320 (337)
T ss_dssp ------------CEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCE
T ss_pred ------------CeEEEcCCccc--eeEEEE-CCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCE
Confidence 12345566665 999999 999999999999999999999999888554 47889999999999999
Q ss_pred EEEeecCCceEEecC
Q 009266 400 LASSGIESDIKILTP 414 (538)
Q Consensus 400 l~s~~~dg~v~vw~~ 414 (538)
|++++.||.|++|++
T Consensus 321 l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 321 IVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEecCCCeEEEEEE
Confidence 999999999999986
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.4e-43 Score=341.05 Aligned_cols=329 Identities=9% Similarity=0.062 Sum_probs=264.8
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-|+|++++|++++.++.|++|++.+++.. ..+..| ..+....|+|++++||+|+.++.
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~ 120 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------KMLKRA-DYTAVDTAKLQMRRFILGTTEGD 120 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETT---------------------TTSCSC-CEEEEEEECSSSCEEEEEETTSC
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccccee---------------------eEEecC-CceEEEEEecCCCEEEEEECCCC
Confidence 36788999999999999999999977654 234445 55566688999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|+||++.+++....+ .+|...|++++|+| ++.+|++++.|+.|++|++.+++.+.. +.+|...|.+++|+|++ .
T Consensus 121 i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~ 194 (420)
T 3vl1_A 121 IKVLDSNFNLQREID-QAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRT--LIGHRATVTDIAIIDRG-R 194 (420)
T ss_dssp EEEECTTSCEEEEET-TSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEE--EECCSSCEEEEEEETTT-T
T ss_pred EEEEeCCCcceeeec-ccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceE--EcCCCCcEEEEEEcCCC-C
Confidence 999999988876555 79999999999999 999999999999999999998877655 77899999999999998 6
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCC--------------CcceeeeeEEEEEcCCCCcEEEEEeCCCeEEE
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--------------NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 230 (538)
+|++++.|+.|++||+++++.+..+..+...... ...+...+.+++|+|+ +.+|++++.+|.|++
T Consensus 195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i 273 (420)
T 3vl1_A 195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY-GKYVIAGHVSGVITV 273 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEE
T ss_pred EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC-CCEEEEEcCCCeEEE
Confidence 8999999999999999999888777654321000 0001234556667887 789999999999999
Q ss_pred EEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEc-CCeEEEeeccCCCCCCCCCCCCcccccc
Q 009266 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (538)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (538)
||+++++.. ......|...|.+++|+|+++ +|++++ ++.|++|++.++
T Consensus 274 ~d~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~---------------- 323 (420)
T 3vl1_A 274 HNVFSKEQT--------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP---------------- 323 (420)
T ss_dssp EETTTCCEE--------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT----------------
T ss_pred EECCCCcee--------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC----------------
Confidence 999886531 223345678999999999998 888887 679999999874
Q ss_pred ccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc---------ceeE
Q 009266 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---------ELIR 379 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~---------~~~~ 379 (538)
...+..+.+|... .+.++.+ +++++|++++.|+.|++|++... ....
T Consensus 324 ---------------------~~~~~~~~~~~~~-~v~~~~~--~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 379 (420)
T 3vl1_A 324 ---------------------ECPVGEFLINEGT-PINNVYF--AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT 379 (420)
T ss_dssp ---------------------TSCSEEEEESTTS-CEEEEEE--ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCE
T ss_pred ---------------------cCchhhhhccCCC-CceEEEe--CCCCEEEEecCCccEEEEeccCCCCCccceeccCcc
Confidence 2335666664333 3777754 67889999999999999998763 2233
Q ss_pred EeecCcceeeEEeecCCCC---eEEEeecCCceEEecCCC
Q 009266 380 VIEADRHVVNCIEPHPHST---VLASSGIESDIKILTPNA 416 (538)
Q Consensus 380 ~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~v~vw~~~~ 416 (538)
.+..|...|.+++|+|+++ .|++++.+|.+++|++..
T Consensus 380 ~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 380 FLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 4567888999999999999 788888899999999864
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-43 Score=327.78 Aligned_cols=312 Identities=18% Similarity=0.254 Sum_probs=233.2
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
++|++++||+|+.|++|+||++.++.... ......+|...|++++|+|+|++||+|+.|++|
T Consensus 24 ~sp~g~~las~~~D~~i~iw~~~~~~~~~------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 24 WNPAGTLLASCGGDRRIRIWGTEGDSWIC------------------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp ECTTSSCEEEEETTSCEEEEEEETTEEEE------------------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCCccee------------------eeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 67899999999999999999999775431 122347899999999999999999999999999
Q ss_pred EEEECCCCc--eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee-eeeeccccCCCcEEEEEcCCC
Q 009266 86 ILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 86 ~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 162 (538)
+||++.++. ++..+ .+|...|.+++|+| ++++|++++.|++|++|++.++... ....+.+|...|.+++|+|++
T Consensus 86 ~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTL-EGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp EEEEECCC-EEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred EEEEccCCCeEEEEEc-cCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 999988764 33444 89999999999999 9999999999999999999876432 234578899999999999999
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeee--eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccC
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATE--LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (538)
.+|++++.|++|++|+++++.... .+.. |...|.+++|+|+ +++|++++.|++|++|+........
T Consensus 163 -~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~----------h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 163 -ELLASASYDDTVKLYREEEDDWVCCATLEG----------HESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp -SCEEEEETTSCEEEEEEETTEEEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCTT
T ss_pred -CEEEEEeCCCcEEEEEecCCCEEEEEEecC----------CCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCCc
Confidence 689999999999999998875432 3322 4447999999998 7999999999999999975432211
Q ss_pred CCCCC-CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcc
Q 009266 241 STDFG-QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (538)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
..... ......+.......|...|.+++|+|++.+|++++ ++.|++|+...........
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------------------- 291 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT------------------- 291 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC-------------------
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee-------------------
Confidence 10000 00001112223334778999999999999998887 6699999987542211100
Q ss_pred ccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC-cEEEEeccCCeEEEeeccCcceeEEee
Q 009266 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIE 382 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~ 382 (538)
.......+.+|... |.+++| +|++ .+||+|+.||+|++|++.+++.+..+.
T Consensus 292 ----------~~~~~~~~~~h~~~--V~~v~~-~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 292 ----------FSLTAHLHQAHSQD--VNCVAW-NPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp ----------EEEEEEETTSSSSC--EEEEEE-CSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred ----------EEEEeeecccccCc--EeEeEE-eCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 00011223467665 999999 9988 599999999999999998887765443
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-43 Score=332.88 Aligned_cols=286 Identities=18% Similarity=0.239 Sum_probs=224.9
Q ss_pred CCCCCCCceEEeecc------CCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEE
Q 009266 4 ASNNNNNKRARTSVD------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (538)
Q Consensus 4 a~~~~~~~~l~t~~~------d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 77 (538)
+-|+|+|++||+|+. |+.|++|+..++..... +.....+|...|++++|+|++++ +
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-----------------~~~~~~~~~~~V~~~~~s~d~~~-l 109 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES-----------------LCTAGVQTEAGVTDVAWVSEKGI-L 109 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG-----------------GCSEEEECSSCEEEEEEETTTEE-E
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee-----------------EecccCCCCCCEEEEEEcCCCCE-E
Confidence 347899999999997 67788888876654321 22345679999999999999864 5
Q ss_pred EecCCCeEEEEECCCCceeeee---ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcE
Q 009266 78 SGSDDRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (538)
Q Consensus 78 t~~~d~~i~iw~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~ 154 (538)
+++.+|+|+||++.+++.+... ..+|...|++|+|+| ++++|++++.+++|++|++.+++.+.. +.+|...|+
T Consensus 110 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~--~~~h~~~v~ 185 (357)
T 4g56_B 110 VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKS--YNAHSSEVN 185 (357)
T ss_dssp EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEE
T ss_pred EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCCCCCEE
Confidence 6778999999999888754322 257999999999999 999999999999999999998877665 889999999
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
+++|+|++..+|++++.|++|++||+++++....+.... +...+.+++|+|+++.+|++|+.++.|++||++
T Consensus 186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~--------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA--------SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT--------CCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred EEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc--------ccccccchhhhhcccceEEEeecccceeEEECC
Confidence 999999987789999999999999999988766554322 344789999999877899999999999999999
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-CEEEEEc-CCeEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
+++. ......|...|++++|+|++ ++|++++ ++.|+|||+.++
T Consensus 258 ~~~~---------------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-------------------- 302 (357)
T 4g56_B 258 NPDS---------------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-------------------- 302 (357)
T ss_dssp CGGG---------------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC--------------------
T ss_pred CCcE---------------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC--------------------
Confidence 8763 22334567899999999987 5788887 669999998763
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC-CCcEEEEeccCCeEEEeeccCcc
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
+.+ ...+|... |++|+| +| ++++|++|+.||+|++|++.+..
T Consensus 303 ------------------~~~-~~~~H~~~--V~~vaf-sP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 303 ------------------EVF-RDLSHRDF--VTGVAW-SPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ------------------EEE-EECCCSSC--EEEEEE-CSSSTTEEEEEETTSCEEEEECC---
T ss_pred ------------------cEe-EECCCCCC--EEEEEE-eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 222 33467776 999999 98 79999999999999999996643
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-42 Score=324.47 Aligned_cols=297 Identities=18% Similarity=0.247 Sum_probs=231.8
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
.++++++|++|+.|++|+||++.+++.... ...+...+.+|...|++++|+|++.+|++|+.|++|
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v 100 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSB--------------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccc--------------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcE
Confidence 455899999999999999999985542100 012356789999999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC--
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP-- 163 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 163 (538)
+||++.+++.+..+ .+|...|++++|+| ++.+|++++.|++|++|++.............|...|.+++|+|.+.
T Consensus 101 ~lwd~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 101 RLWDLRTGTTYKRF-VGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp EEEETTSSCEEEEE-ECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred EEEECCCCcEEEEE-cCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence 99999999988777 79999999999999 99999999999999999997433332222347889999999999862
Q ss_pred -------cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 164 -------HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 164 -------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
.+|++++.|+.|++|+. ..+....+.. |...|.+++|+|+ +++|++|+.||.|++||++..
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~----------h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA----------HESNVNHLSISPN-GKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC----------CSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCC
T ss_pred cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC----------ccccceEEEECCC-CCEEEEEcCCCeEEEEECCCC
Confidence 47999999999999994 3444444443 3447999999998 799999999999999999643
Q ss_pred cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCC--CCCCCCccccccccccCC
Q 009266 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN--PPPSSPVSTRSEASEMGS 314 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~ 314 (538)
.. +.... .+...|.+++|+|++++|+++.++.|++|++.+..... .+...+
T Consensus 246 ~~--------------~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~------------ 298 (343)
T 2xzm_R 246 TY--------------PQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP------------ 298 (343)
T ss_dssp SS--------------CSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS------------
T ss_pred cc--------------cceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc------------
Confidence 21 11111 12346999999999999998889999999998754322 111000
Q ss_pred CCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
........+|... |.+++| +|+|++|++|+.||.|++|++.++.
T Consensus 299 ---------------~~~~~~~~~~~~~--v~~~~~-sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 299 ---------------ITKAEGQKGKNPQ--CTSLAW-NALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp ---------------GGGBTTBCCSCCC--EEEEEE-CSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred ---------------chhhhhhcCCCCc--eEEEEE-CCCCCeEEEecCCceEEEEEEEccC
Confidence 0011122355554 899999 9999999999999999999987653
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-42 Score=323.13 Aligned_cols=296 Identities=13% Similarity=0.217 Sum_probs=240.0
Q ss_pred eeeeeEEcCCcCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCCce----eeeeccCCCCCeEEEEEeecCCCceEEEEe
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
+.+..+|+||.+.|++|+|+|+ +++|||||.|++|+||++.+++. ....+.+|...|.+++|+| ++.+|++++
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--dg~~l~s~~ 105 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALSGS 105 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT--TSSEEEEEE
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC--CCCEEEEEc
Confidence 3456789999999999999997 68999999999999999976542 2223478999999999999 999999999
Q ss_pred CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeee
Q 009266 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
.|+.|++|+......... ...+...+..+.+++.+ .+|++++.|+.+++|++.......... .+ +...
T Consensus 106 ~d~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~-------~~--~~~~ 173 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQD-------ES--HSEW 173 (340)
T ss_dssp TTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS-------SS--CSSC
T ss_pred ccccceEEeecccceeee--ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEe-------cc--ccCc
Confidence 999999999987766554 56677889999999998 688999999999999987654432211 11 3447
Q ss_pred eEEEEEcCCC-CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCe
Q 009266 206 LNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (538)
Q Consensus 206 v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~ 283 (538)
+..++|++.. ..++++++.++.|++|++++++.. .....|...|++++|+|++++|++++ ++.
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~---------------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK---------------TNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee---------------eEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 8899998763 357889999999999999987632 23345678999999999999999988 669
Q ss_pred EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc
Q 009266 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (538)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~ 363 (538)
|++|++.+ ...+..+..+. .+.+++| +|++.++ +++.
T Consensus 239 i~iwd~~~--------------------------------------~~~~~~~~~~~---~v~~~~~-~~~~~~~-~~~~ 275 (340)
T 4aow_A 239 AMLWDLNE--------------------------------------GKHLYTLDGGD---IINALCF-SPNRYWL-CAAT 275 (340)
T ss_dssp EEEEETTT--------------------------------------TEEEEEEECSS---CEEEEEE-CSSSSEE-EEEE
T ss_pred EEEEEecc--------------------------------------CceeeeecCCc---eEEeeec-CCCCcee-eccC
Confidence 99999886 33344555443 3888988 8987655 5557
Q ss_pred CCeEEEeeccCcceeEEee---------cCcceeeEEeecCCCCeEEEeecCCceEEecCCCCc
Q 009266 364 CGRIFIWKKKGGELIRVIE---------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 418 (538)
|+.|+||++.++..+..+. +|...|++++|+|++++||+|+.||.|+||++.+|.
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999998887765543 678899999999999999999999999999998875
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-42 Score=318.79 Aligned_cols=279 Identities=15% Similarity=0.195 Sum_probs=233.8
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-|+|++++|++|+.||+|+||++.+++.+ +.+.+|..+|.+++|+|++++|++|+.|++
T Consensus 20 ~fsp~~~~l~s~~~dg~v~lWd~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 20 DFHPTEPWVLTTLYSGRVELWNYETQVEV---------------------RSIQVTETPVRAGKFIARKNWIIVGSDDFR 78 (304)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcee---------------------EEeeccCCcEEEEEEeCCCCEEEEECCCCE
Confidence 46789999999999999999999988764 668889999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|++|++.+++.+..+ .+|...|++++|+| ++.+|++|+.|++|++|++.++.... ..+.+|...|.+++|+|.++.
T Consensus 79 i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 79 IRVFNYNTGEKVVDF-EAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp EEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEE-EEECCCCSCEEEEEECTTCTT
T ss_pred EEEEECCCCcEEEEE-eCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchh-hhhcccCCcEEEEEECCCCCC
Confidence 999999999988877 79999999999999 99999999999999999998775443 347889999999999996557
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC-CCcEEEEEeCCCeEEEEEcCCccccCCCC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 243 (538)
+|++|+.|++|++||++++.....+... +...+..+.|+|. ++.+|++|+.|++|++||+++++.
T Consensus 155 ~l~sgs~D~~v~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~----- 220 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTTG---------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----- 220 (304)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEECC---------CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE-----
T ss_pred EEEEEeCCCeEEEEECCCCCccceeccC---------CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc-----
Confidence 9999999999999999887766555422 2236888888873 267999999999999999998753
Q ss_pred CCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 009266 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (538)
.....+|...|.+++|+|++++|++++ ++.|++|++.+
T Consensus 221 ----------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~------------------------------- 259 (304)
T 2ynn_A 221 ----------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST------------------------------- 259 (304)
T ss_dssp ----------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-------------------------------
T ss_pred ----------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC-------------------------------
Confidence 223345788999999999999999998 66999999887
Q ss_pred CCCCCCcccCCceeeccccceeeeEEEEecCCCc--EEEEeccCCeEEEeeccC
Q 009266 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~--~l~~gs~dg~i~iwd~~~ 374 (538)
....+.+..|... +.+++| +|++. +||+|+.+| +.+|++..
T Consensus 260 -------~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 260 -------YKVEKTLNVGLER--SWCIAT-HPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp -------CCEEEEECCSSSS--EEEEEE-CTTCGGGCEEEEETTE-EEEEECC-
T ss_pred -------CceeeeccCCCcc--EEEEEE-CCCCCceEEEEecCCc-eEEEEecc
Confidence 4456677777665 889998 77764 577777555 67777643
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-43 Score=326.30 Aligned_cols=285 Identities=14% Similarity=0.145 Sum_probs=229.6
Q ss_pred cCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCC----------ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE----------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 58 ~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~----------~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
..|...|.+++|+|+|++|++++ ++++++|+.... .........|...|.+++|+| + ..|++|+.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d-~~l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG--E-RGILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET--T-TEEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC--C-CeEEEEECC
Confidence 35778899999999999999888 667788763210 001111134667899999998 7 478899999
Q ss_pred CcEEEeecccCceeee--eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeee
Q 009266 128 GQVRHAQILERGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (538)
|+|+||++.+++.+.. ..+.+|...|++|+|+|++ ++|++|+.|++|++||+++++++..+..| ...
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h----------~~~ 171 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAH----------AAQ 171 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCC----------SSC
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCc----------CCc
Confidence 9999999998876543 3356899999999999999 78999999999999999999988877653 347
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEE
Q 009266 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~ 285 (538)
|.+++|+|++..+|++++.|++|++||+++++.. ..+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-------------------------~~~~----------------- 209 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-------------------------SQIG----------------- 209 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-------------------------EECC-----------------
T ss_pred eEEEEecCCCCCceeeecccccccccccccccee-------------------------eeee-----------------
Confidence 9999999986678999999999999999876411 0000
Q ss_pred EeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC-CCcEEEEeccC
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDC 364 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~~gs~d 364 (538)
...+.. .+.+++| +| ++++|++|+.|
T Consensus 210 --------------------------------------------------~~~~~~--~~~~~~~-~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 210 --------------------------------------------------CSAPGY--LPTSLAW-HPQQSEVFVFGDEN 236 (344)
T ss_dssp ------------------------------------------------------CC--CEEEEEE-CSSCTTEEEEEETT
T ss_pred --------------------------------------------------cceeec--cceeeee-cCCCCcceEEeccC
Confidence 001111 2678888 77 56789999999
Q ss_pred CeEEEeeccCcceeEEeecCcceeeEEeecCCC-CeEEEeecCCceEEecCCCCcccccCccceeeeecc--cCc--eee
Q 009266 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRATLPTNIEQVLIPD--HIR--WFA 439 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~--~l~ 439 (538)
|.|+|||+.+++++.++.+|...|++++|+|++ ++||+|+.|++|+||++.++++..+.+|...|..++ |++ .|+
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEE
Confidence 999999999999999999999999999999998 589999999999999999999988999999998887 555 677
Q ss_pred eccCCCCCceeec
Q 009266 440 LGDDDDGDYYFYD 452 (538)
Q Consensus 440 s~~~d~~~~~~~~ 452 (538)
+++.|+..+.|..
T Consensus 317 s~s~D~~v~~w~v 329 (344)
T 4gqb_B 317 TVGWDHQVVHHVV 329 (344)
T ss_dssp EEETTSCEEEEEC
T ss_pred EEcCCCeEEEEEC
Confidence 9999999988854
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-42 Score=334.27 Aligned_cols=329 Identities=12% Similarity=0.122 Sum_probs=265.4
Q ss_pred cCCcCcEEEEEEcCCCC-EEEEecCCCeEEEEEC----CCCc------eeeeecc---------CCCCCeEEEEEeecCC
Q 009266 58 DKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDW----KTER------VKLSFHS---------GHNDNVFQAKIMPFTD 117 (538)
Q Consensus 58 ~~h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~----~~~~------~~~~~~~---------~~~~~v~~l~~~~~~~ 117 (538)
..|.+.|++++|+|+++ +||+|+.++.|+||++ .+++ ....+.. +|...|++++|+| +
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 119 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH--D 119 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT--T
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC--C
Confidence 44669999999999999 9999999999999999 8887 3333311 1677999999999 9
Q ss_pred CceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCC
Q 009266 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (538)
Q Consensus 118 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (538)
+.+|++++.+|.|++|+ .++..+.. +..|...|.+++|+|++ .+|++++.++.|++|++.+++.+..+..+.....
T Consensus 120 ~~~l~~~~~dg~i~i~~-~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWN-KTGALLNV--LNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp SSEEEEEETTSCEEEEE-TTSCEEEE--ECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred CCEEEEEeCCCeEEEEe-CCCCeeee--ccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999999999999999 44554443 77899999999999999 6899999999999999999988777664432100
Q ss_pred C-----CcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC
Q 009266 198 R-----NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (538)
Q Consensus 198 ~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 272 (538)
. .......+.+++|+|+ ..+++++.+|.|++|++++++. ......|...|.+++|+|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTP---------------TGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp ----------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSC---------------SEEECCCSSCEEEEEEETT
T ss_pred ceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCce---------------eeeeccCCCceEEEEECCC
Confidence 0 0001112889999996 4689999999999999998642 2233456789999999999
Q ss_pred CCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEe
Q 009266 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (538)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 351 (538)
+++|++++ ++.|++|++.+ ......+.+|... |.+++|
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~--------------------------------------~~~~~~~~~~~~~--i~~~~~- 297 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGN--------------------------------------GNSQNCFYGHSQS--IVSASW- 297 (425)
T ss_dssp TTEEEEEETTSCEEEECSSS--------------------------------------BSCSEEECCCSSC--EEEEEE-
T ss_pred CCEEEEEcCCCEEEEEECCC--------------------------------------CccceEecCCCcc--EEEEEE-
Confidence 99999888 66999999886 3455667777775 899999
Q ss_pred cCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCc-------------
Q 009266 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD------------- 418 (538)
Q Consensus 352 s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~------------- 418 (538)
+|++ +|++++.++.|++|++.+++++..+..|...|.+++|+|++++|++++.+|.|++|++.+++
T Consensus 298 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 376 (425)
T 1r5m_A 298 VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376 (425)
T ss_dssp ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------------
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccc
Confidence 9999 99999999999999999999999999999999999999999999999999999999998765
Q ss_pred --------ccccCccce--eeeecc--cCc-eeeeccCCCCCceee
Q 009266 419 --------RATLPTNIE--QVLIPD--HIR-WFALGDDDDGDYYFY 451 (538)
Q Consensus 419 --------~~~~~~~~~--~~~~~~--~~~-~l~s~~~d~~~~~~~ 451 (538)
...+..|.. .+..+. +++ +|++++.++..+.|.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 377 LNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp --CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred cCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 345566654 677666 566 899999999888774
No 38
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.8e-42 Score=323.14 Aligned_cols=276 Identities=19% Similarity=0.248 Sum_probs=233.8
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-++|++++|++|+.||+|+||+..+++.. ..+..|...|.+++|+|+|.+||+|+.|+.
T Consensus 71 ~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~---------------------~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 71 DWCKDKRRIVSSSQDGKVIVWDSFTTNKE---------------------HAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEE---------------------EEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCcc---------------------eEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 35688999999999999999999877764 456778999999999999999999999999
Q ss_pred EEEEECCCCc------eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 85 VILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 85 i~iw~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
|++|++.... ....+ .+|...|.+++|+| ++..|++++.|++|++|++.+++.+.. +.+|...|.+++|
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~ 204 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQS--FHGHGADVLCLDL 204 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEE
T ss_pred EEEEEEeccccccccccceee-eccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEE--EcCCCCCeEEEEE
Confidence 9999986542 22333 68999999999999 999999999999999999998887655 7889999999999
Q ss_pred cCCC-CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcc
Q 009266 159 EPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 159 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
+|.. ..+|++|+.||+|++||+++++++..+..+ ...|++++|+|+ +.+|++++.|++|++||++..+
T Consensus 205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h----------~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH----------ESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADR 273 (354)
T ss_dssp CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC----------SSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTE
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC----------CCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc
Confidence 8852 268999999999999999999988777643 347999999997 7899999999999999998764
Q ss_pred ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCC
Q 009266 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
..... ....+...+.+++|+|++++|++++ ++.|++|++.+
T Consensus 274 ~~~~~-------------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~------------------------- 315 (354)
T 2pbi_B 274 EVAIY-------------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK------------------------- 315 (354)
T ss_dssp EEEEE-------------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------
T ss_pred EEEEE-------------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC-------------------------
Confidence 32110 0111234689999999999999988 56999999876
Q ss_pred ccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
...+..+.+|... |.+++| +|+|++|++|+.||+|+||+
T Consensus 316 -------------~~~~~~l~~h~~~--v~~l~~-spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 -------------GSRVSILFGHENR--VSTLRV-SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -------------CSEEEEECCCSSC--EEEEEE-CTTSSCEEEEETTSEEEEEC
T ss_pred -------------CceEEEEECCCCc--EEEEEE-CCCCCEEEEEcCCCCEEecC
Confidence 3345677888886 999999 99999999999999999995
No 39
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-43 Score=346.10 Aligned_cols=323 Identities=11% Similarity=0.038 Sum_probs=230.5
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC------CCEEEEec
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD------GDILISGS 80 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------g~~l~t~~ 80 (538)
+|+++.+++++.|++|+||++.++++. ......+.+|.+.|++|+|+|+ +.+||+++
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~-----------------~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s 232 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLH-----------------CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS 232 (524)
T ss_dssp ------------CEEEEEEEEETTTCC-----------------EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred chhhhhhccCCCCceEEEEEccCCCCC-----------------ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence 355566677889999999999877642 1123456778899999999996 57999999
Q ss_pred CCCeEEEEECCCCcee----------eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC
Q 009266 81 DDRRVILWDWKTERVK----------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~----------~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 150 (538)
.||+|+||++.++... ...+.+|...|++++|+| + ..|++|+.||+|++|++.++... ...+.+|.
T Consensus 233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~-~~~~~~H~ 308 (524)
T 2j04_B 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVP-SFYDQVHD 308 (524)
T ss_dssp TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSC-SEEEECSS
T ss_pred cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCc-eEEeeccc
Confidence 9999999999876421 112368999999999997 5 48999999999999999876432 23377899
Q ss_pred CCcEEE--EEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeE
Q 009266 151 GRAHKL--AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (538)
Q Consensus 151 ~~v~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 228 (538)
..|++| +|+|+++++|++++.|++|+|||++++++...+..+. ....|.+++|+|+ +..|++++.+++|
T Consensus 309 ~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--------~~~~v~~v~fsp~-~~~l~s~~~d~tv 379 (524)
T 2j04_B 309 SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--------RGSNLVPVVYCPQ-IYSYIYSDGASSL 379 (524)
T ss_dssp SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC--------SCCSCCCEEEETT-TTEEEEECSSSEE
T ss_pred ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc--------ccCcccceEeCCC-cCeEEEeCCCCcE
Confidence 999999 5677654689999999999999999887766655332 1124788999997 6789999999999
Q ss_pred EEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccc
Q 009266 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (538)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (538)
++|+++++.. + .....|...|.+++|+|+|++|++++ +++|++|++...
T Consensus 380 ~lwd~~~~~~--------------~-~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--------------- 429 (524)
T 2j04_B 380 RAVPSRAAFA--------------V-HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR--------------- 429 (524)
T ss_dssp EEEETTCTTC--------------C-EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS---------------
T ss_pred EEEECccccc--------------c-eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh---------------
Confidence 9999988642 1 22335788999999999999999988 669999997542
Q ss_pred cccccCCCCccccCCCCCCCCcccCCceeecc---ccceeeeEEEEecCCCcEEEEeccCCeEEEeecc-CcceeEEeec
Q 009266 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGH---RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEA 383 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~-~~~~~~~~~~ 383 (538)
.+..+..+ .....+++++| +|+++.+.. .. .+++|... ++.++..+.+
T Consensus 430 ------------------------~~~~~~~~~~~~~~~~v~~v~~-sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 430 ------------------------LLHGIKNSSATQKSLRLWKWDY-SIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp ------------------------TTTCC------CCCCEEEECBC-CSSSCEEEE-CC--CCCCCC-------------
T ss_pred ------------------------hccccccCccceeeeEEEEecc-CCCCCeEEc-cC--CceecccccCCcceeeecC
Confidence 11111110 01113778898 999985532 22 23344443 5778888999
Q ss_pred CcceeeEEeecCCCC---eEEEeecCCceEEecCCCC
Q 009266 384 DRHVVNCIEPHPHST---VLASSGIESDIKILTPNAA 417 (538)
Q Consensus 384 h~~~v~~~~~s~~~~---~l~s~~~dg~v~vw~~~~~ 417 (538)
|...|++|+|+|+++ +||+|+.+|.||||++...
T Consensus 482 h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 482 HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 999999999999965 9999999999999998754
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-43 Score=336.59 Aligned_cols=332 Identities=13% Similarity=0.173 Sum_probs=262.7
Q ss_pred cCcEEEEEEcCCCC-EEEEe----------cCCCeEEEEECCCCce---eeeeccCCCCCeEEEEEeecCCCceEEEEeC
Q 009266 61 RGCVNTVSFNTDGD-ILISG----------SDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (538)
Q Consensus 61 ~~~v~~~~~s~~g~-~l~t~----------~~d~~i~iw~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~ 126 (538)
...|.+++|+|+++ +|++| +.|+.|+||++.++.. +.. ..|...|++++|+| ++.+|++++.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~--~~~~l~~~~~ 87 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSH--NNKIIAGALD 87 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECS--SSSCEEEEES
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECC--CCCeEEEEcc
Confidence 35688999999987 99999 8899999999998763 222 36889999999999 9999999999
Q ss_pred CCcEEEeecccC--ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC------eeeeeeecccCCCC
Q 009266 127 DGQVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA------ATELFTCRPIDDRR 198 (538)
Q Consensus 127 dg~v~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~ 198 (538)
+|.|++|++.+. .......+.+|...|++++|+|++..+|++++.|+.|++|++.+++ ....+.. ..
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~ 162 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ-----SM 162 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC-----SC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc-----cc
Confidence 999999999872 1112344788999999999999844789999999999999999886 2222211 11
Q ss_pred CcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-CEEE
Q 009266 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLV 277 (538)
Q Consensus 199 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~ 277 (538)
. +...|.+++|+|+++.+|++++.+|.|++|++++++....... ......|...|.+++|+|++ .+|+
T Consensus 163 ~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 163 S--SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY---------TSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp C--SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC---------CCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred C--CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec---------cccccccCCceEEEEECCCCCCEEE
Confidence 1 4457999999998678999999999999999998764322111 11112236789999999997 5787
Q ss_pred EEc-CC---eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee-ccccceeeeEEEEec
Q 009266 278 SYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFG 352 (538)
Q Consensus 278 ~~~-~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~s 352 (538)
+++ ++ .|++|+++++ ......+. +|... |.+++| +
T Consensus 232 ~~~~d~~~~~i~~~d~~~~-------------------------------------~~~~~~~~~~~~~~--v~~~~~-s 271 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNA-------------------------------------NTPLQTLNQGHQKG--ILSLDW-C 271 (416)
T ss_dssp EEECCSSSCCCCEEETTST-------------------------------------TSCSBCCCSCCSSC--EEEEEE-C
T ss_pred EEECCCCCceEEEEeCCCC-------------------------------------CCCcEEeecCccCc--eeEEEe-C
Confidence 777 45 8999999874 23345555 67765 999999 9
Q ss_pred C-CCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCC-CeEEEeecCCceEEecCCCCcccccC-c-----
Q 009266 353 P-KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRATLP-T----- 424 (538)
Q Consensus 353 ~-~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~-~----- 424 (538)
| ++++|++++.||.|++|++.+++++..+.+|...|++++|+|++ ++|++++.|+.|+||++......... .
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 351 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQ 351 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccc
Confidence 9 99999999999999999999999999999999999999999999 79999999999999999876532211 0
Q ss_pred ------------------------------cceeeeecc--cCc-eeeeccCCCCCceeec
Q 009266 425 ------------------------------NIEQVLIPD--HIR-WFALGDDDDGDYYFYD 452 (538)
Q Consensus 425 ------------------------------~~~~~~~~~--~~~-~l~s~~~d~~~~~~~~ 452 (538)
+...+..+. +++ +|++++.++....|..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 352 QESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ---------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred cCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 233333333 666 8999999998887754
No 41
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.5e-42 Score=328.44 Aligned_cols=298 Identities=15% Similarity=0.133 Sum_probs=246.3
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc------eeeeeccCCCCCeEEEEEeecCC----C--
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTD----D-- 118 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~----~-- 118 (538)
+...+.+.+|.+.|++|+|+| ++|++|+.||.|+||++.+++ .+..+ .+|...|++++|+| + +
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~g~~ 80 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQ--AIERDAFE 80 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEE--EEETTTEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEec--ccccCCcc
Confidence 355678899999999999998 799999999999999999887 55666 68999999999999 8 8
Q ss_pred -ceEEEEeCCCcEEEeecccCce-----eeeeecccc-----CCCcEEEEEc----CCCCcE-EEEEcCCCcEEEEecCC
Q 009266 119 -RSIVTCAADGQVRHAQILERGG-----VETKLLGKH-----QGRAHKLAIE----PGSPHV-FYTCGEDGLVQHFDLRT 182 (538)
Q Consensus 119 -~~l~s~~~dg~v~vwd~~~~~~-----~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~dg~i~iwd~~~ 182 (538)
.+|++++.+|.|++|++.++.. ... +..| ...|.+++|+ |++ .+ |++++.+|.|++|++++
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEK--LDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEE--ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred ccEEEEEcCCCCEEEEEccCCccccccccee--ecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence 9999999999999999988775 433 6677 5899999999 988 57 99999999999999998
Q ss_pred ------CCeee-----eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCccc
Q 009266 183 ------GAATE-----LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (538)
Q Consensus 183 ------~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 251 (538)
++.+. .+..... ....+...|.+++|+|+ + +|++++.+|.|++|++++++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~----------- 221 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVE---SPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLY----------- 221 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEEC---CSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEE-----------
T ss_pred cccccccceeeccCcceeeeeec---cccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeE-----------
Confidence 65554 4422000 00113457999999998 6 99999999999999999865321
Q ss_pred CCCCccCC---C---ccceEEEEEcCCCCEEEEEc-C---CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 252 CPPNLIGD---E---QVGITGLAFSDQSELLVSYN-D---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 252 ~~~~~~~~---~---~~~i~~~~~s~~~~~l~~~~-~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
.... | ...|.+++|+|++++|++++ + +.|++|++.++
T Consensus 222 ----~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----------------------------- 268 (397)
T 1sq9_A 222 ----NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----------------------------- 268 (397)
T ss_dssp ----EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-----------------------------
T ss_pred ----EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-----------------------------
Confidence 1222 5 77899999999999999888 5 68999999874
Q ss_pred CCCCCCCcccCCceeec-------------cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee------
Q 009266 322 PSTANTDVRIAPQVYKG-------------HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE------ 382 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-------------~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~------ 382 (538)
..+..+.+ |... |.+++| +|++++|++++.||.|+||++.+++++..+.
T Consensus 269 ---------~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 336 (397)
T 1sq9_A 269 ---------ERIGSLSVPTHSSQASLGEFAHSSW--VMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336 (397)
T ss_dssp ---------CEEEEECBC--------CCBSBSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred ---------cccceeccCcccccccccccccCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcc
Confidence 23344444 6665 999999 9999999999999999999999999999999
Q ss_pred cC---------------cceeeEEeecCCC----------CeEEEeecCCceEEecCCCC
Q 009266 383 AD---------------RHVVNCIEPHPHS----------TVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 383 ~h---------------~~~v~~~~~s~~~----------~~l~s~~~dg~v~vw~~~~~ 417 (538)
+| ...|++++|+|++ ++|++++.||.|+||++.++
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 337 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 88 8999999999998 79999999999999998765
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-42 Score=358.92 Aligned_cols=381 Identities=11% Similarity=0.095 Sum_probs=265.9
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
|+| +++|++++.|++|+||++.+++++ ..+. |...|++++|+|++++|++|+.+|.|
T Consensus 66 fsp-g~~L~S~s~D~~v~lWd~~~~~~~---------------------~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V 122 (902)
T 2oaj_A 66 FVK-GIYLVVINAKDTVYVLSLYSQKVL---------------------TTVF-VPGKITSIDTDASLDWMLIGLQNGSM 122 (902)
T ss_dssp EET-TTEEEEEETTCEEEEEETTTCSEE---------------------EEEE-CSSCEEEEECCTTCSEEEEEETTSCE
T ss_pred EcC-CCEEEEEECcCeEEEEECCCCcEE---------------------EEEc-CCCCEEEEEECCCCCEEEEEcCCCcE
Confidence 344 679999999999999999988765 3343 67899999999999999999999999
Q ss_pred EEEECCCCceee----------eeccCCCCCeEEEEEeecCC-CceEEEEeCCCcEEEeecccCceeeeeeccc------
Q 009266 86 ILWDWKTERVKL----------SFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGK------ 148 (538)
Q Consensus 86 ~iw~~~~~~~~~----------~~~~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~------ 148 (538)
++|++.+++... ....+|.+.|++|+|+| + +.+|++|+.+|.| +|++.+++.+.. +..
T Consensus 123 ~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp--~~~~~l~~g~~dg~v-lWd~~~~~~~~~--~~~~~~~g~ 197 (902)
T 2oaj_A 123 IVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP--RDIGTVLISYEYVTL-TYSLVENEIKQS--FIYELPPFA 197 (902)
T ss_dssp EEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET--TEEEEEEEECSSCEE-EEETTTTEEEEE--ECCCBCTTC
T ss_pred EEEECCCCccccceeccccccccccccCCCCeEEEEEcc--CCCCEEEEEeCCCcE-EEECCCCceEEE--EecccCCcC
Confidence 999999887531 12367999999999999 6 4789999999999 999998876654 333
Q ss_pred ------------cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeee-----cccCC---CCCcceeeeeEE
Q 009266 149 ------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC-----RPIDD---RRNYMTVVNLNA 208 (538)
Q Consensus 149 ------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~---~~~~~~~~~v~~ 208 (538)
|...|++++|+|++ .+|++++.||+|++||+++++++..... +.... .....+...|.+
T Consensus 198 ~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~ 276 (902)
T 2oaj_A 198 PGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISK 276 (902)
T ss_dssp CCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEE
T ss_pred CCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeE
Confidence 35789999999998 7999999999999999999877653211 11000 000012336888
Q ss_pred EEEc----CCCCcEEEEEeCC-----CeEEEEEcC---------------------------------------------
Q 009266 209 IAID----PRNANLFAVAGSD-----EYTRLYDIR--------------------------------------------- 234 (538)
Q Consensus 209 ~~~~----~~~~~~l~~~~~d-----g~v~iwd~~--------------------------------------------- 234 (538)
++|+ |+++.+|++|+.+ ..|++|++.
T Consensus 277 v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp 356 (902)
T 2oaj_A 277 VYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSP 356 (902)
T ss_dssp EEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCS
T ss_pred EEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCC
Confidence 8885 3323566666554 256666631
Q ss_pred --------------------------CccccCCC-------CCCCC-Ccc------------------cCCCCccCCCcc
Q 009266 235 --------------------------KYKWDGST-------DFGQP-ADY------------------FCPPNLIGDEQV 262 (538)
Q Consensus 235 --------------------------~~~~~~~~-------~~~~~-~~~------------------~~~~~~~~~~~~ 262 (538)
++...... ....+ +.. ......+.+|..
T Consensus 357 ~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~ 436 (902)
T 2oaj_A 357 YFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVR 436 (902)
T ss_dssp HHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBC
T ss_pred CcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcC
Confidence 11000000 00000 000 000001122333
Q ss_pred ceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCC--CC-------CCCccccccccccCCCCccccCCCCCCCCcc--
Q 009266 263 GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP--PP-------SSPVSTRSEASEMGSDHTSAASPSTANTDVR-- 330 (538)
Q Consensus 263 ~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 330 (538)
.+.+++|+|++++|++++ +++|++||+.++..... +. ...........+++|+++.+++...+.+.+.
T Consensus 437 ~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd 516 (902)
T 2oaj_A 437 TKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516 (902)
T ss_dssp CCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEE
Confidence 445566689999999998 66999999998743211 00 0022234455667788887777655443220
Q ss_pred -------------------------------------------------cCCceeeccccceeeeEEEEecCCCcEEEEe
Q 009266 331 -------------------------------------------------IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 331 -------------------------------------------------~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g 361 (538)
.++..+.+|... |++|+| ||+| +||+|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~--V~svaf-SpdG-~lAsg 592 (902)
T 2oaj_A 517 YEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK--TSAINN-SNIG-FVGIA 592 (902)
T ss_dssp EEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS--EEEEEE-CBTS-EEEEE
T ss_pred ecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc--EEEEEe-cCCc-EEEEE
Confidence 124566778876 999998 9999 99999
Q ss_pred ccCCeEEEeeccCcceeE-----Eee-cCcceeeEEeec-----CCC---CeEEEeecCCceEEecC---CCCcc
Q 009266 362 SDCGRIFIWKKKGGELIR-----VIE-ADRHVVNCIEPH-----PHS---TVLASSGIESDIKILTP---NAADR 419 (538)
Q Consensus 362 s~dg~i~iwd~~~~~~~~-----~~~-~h~~~v~~~~~s-----~~~---~~l~s~~~dg~v~vw~~---~~~~~ 419 (538)
+.|++|+|||+.++..+. .+. +|...|++++|+ |+| ++|++|+.|++|++|++ .+++.
T Consensus 593 s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF 667 (902)
T ss_dssp ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred eCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence 999999999998876653 333 889999999999 886 79999999999999998 55543
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.7e-41 Score=343.47 Aligned_cols=348 Identities=16% Similarity=0.164 Sum_probs=268.8
Q ss_pred CCC--CCceEEeeccCCceEEeeeccC--------ceeccc-----------cch----hhccccc----ceEEe----e
Q 009266 6 NNN--NNKRARTSVDKALVDVWLRELG--------QLSTRN-----------FAL----RRRASED----LVLRL----G 52 (538)
Q Consensus 6 ~~~--~~~~l~t~~~d~~v~iwd~~~g--------~~~~~~-----------~~~----~~~~~~~----~~~~~----~ 52 (538)
++| ++++|++|+.||+|+||++.++ +++... |.+ +++++.+ ..+.+ +
T Consensus 72 ~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~ 151 (615)
T 1pgu_A 72 FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN 151 (615)
T ss_dssp ECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC
T ss_pred ECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC
Confidence 567 8999999999999999999765 333221 111 2222222 12222 5
Q ss_pred eeeEEcCCcCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCC---CeEEEEEeecCC-CceEEEEeCC
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTD-DRSIVTCAAD 127 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~-~~~l~s~~~d 127 (538)
....+.+|...|++++|+|+++ +|++++.++.|++|++.+++.+..+ .+|.. .|++++|+| + +.+|++++.+
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d 228 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSP--DSGEFVITVGSD 228 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECS--TTCCEEEEEETT
T ss_pred cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECC--CCCCEEEEEeCC
Confidence 6677889999999999999998 8999999999999999999988777 78988 999999999 9 9999999999
Q ss_pred CcEEEeecccCceeeeeec-c---ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeeccc---------
Q 009266 128 GQVRHAQILERGGVETKLL-G---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI--------- 194 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------- 194 (538)
|.|++|++.+++.+.. + . .|...|.+++|+ ++ .+|++++.++.|++|++++++.+..+..+..
T Consensus 229 g~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 229 RKISCFDGKSGEFLKY--IEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp CCEEEEETTTCCEEEE--CCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred CeEEEEECCCCCEeEE--ecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 9999999998877665 5 4 799999999999 77 7899999999999999998876655543310
Q ss_pred ----------------------------CCCCCc-------------------------------ceeeeeEEEEEc---
Q 009266 195 ----------------------------DDRRNY-------------------------------MTVVNLNAIAID--- 212 (538)
Q Consensus 195 ----------------------------~~~~~~-------------------------------~~~~~v~~~~~~--- 212 (538)
....+| .+...|.+++|.
T Consensus 305 ~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~ 384 (615)
T 1pgu_A 305 VATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 384 (615)
T ss_dssp EEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT
T ss_pred EeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc
Confidence 000000 011223333331
Q ss_pred -------------------------------CCC-------------------------------------CcEEEEEeC
Q 009266 213 -------------------------------PRN-------------------------------------ANLFAVAGS 224 (538)
Q Consensus 213 -------------------------------~~~-------------------------------------~~~l~~~~~ 224 (538)
|++ +.+|++++.
T Consensus 385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (615)
T 1pgu_A 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLE 464 (615)
T ss_dssp CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEET
T ss_pred EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeec
Confidence 110 234555555
Q ss_pred -CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCC
Q 009266 225 -DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 225 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (538)
++.|++|++..+++. . .....|...|.+++|+|++++|++++ ++.|++|++.++
T Consensus 465 ~d~~i~~~~~~~~~~~-------------~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---------- 520 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVS-------------F-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---------- 520 (615)
T ss_dssp TTSCEEEEETTEEEEE-------------E-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------
T ss_pred CCCeEEEEECCCcccc-------------c-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC----------
Confidence 666777776654321 0 23345678999999999999999998 669999999873
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceeec-cccceeeeEEEEecC----------CCcEEEEeccCCeEEEee
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGP----------KCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~----------~~~~l~~gs~dg~i~iwd 371 (538)
..+..+.+ |... |++++| +| ++++||+|+.||.|++|+
T Consensus 521 ----------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 521 ----------------------------EVKTSRWAFRTSK--INAISW-KPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp ----------------------------EEEECCSCCCSSC--EEEEEE-CCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred ----------------------------cceeEeecCCCCc--eeEEEE-cCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 33444555 6665 999999 99 999999999999999999
Q ss_pred ccCc-ceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 372 KKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 372 ~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|++..
T Consensus 570 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 570 VKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9998 78899999999999999999999 99999999999999864
No 44
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-42 Score=328.22 Aligned_cols=292 Identities=16% Similarity=0.214 Sum_probs=233.1
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
++|++++|++|+.|++|+||++.+++.+ ..+++|...|.+++|+|+|++||+|+.|+.|
T Consensus 74 ~sp~~~~l~s~s~D~~v~iWd~~~~~~~---------------------~~~~~h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 74 WTPEKNWIVSASQDGRLIVWNALTSQKT---------------------HAIKLHCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTTTEEE---------------------EEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCccc---------------------eEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 5778999999999999999999988764 5688999999999999999999999999999
Q ss_pred EEEECCCCc------eeeeeccCCCCCeEEEEEeecCC-CceEEEEeCCCcEEEeecccCceeeee---eccccCCCcEE
Q 009266 86 ILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETK---LLGKHQGRAHK 155 (538)
Q Consensus 86 ~iw~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~~~v~~ 155 (538)
+||++.+.. .+...+.+|.+.|.+++|+| + +..|++|+.|++|++||+.++..+... ...+|...|.+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~--~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP--DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS--SSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEec--CCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 999987532 12334479999999999998 5 567999999999999999988876542 12579999999
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
++|+|....+|++|+.|++|++||++. ...+..+.. |...|.+++|+|+ +.+|++|+.||+|++||++
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~----------h~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG----------HEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC----------CSSCCCEEEECTT-SSEEEEECSSSCEEEEETT
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC----------cCCCeEEEEEecC-CCeEEEEcCCCeEEEEECC
Confidence 999885448999999999999999984 455555543 3447999999997 7899999999999999999
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccC
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (538)
+++........ ......+...|.+++|+|+|++|++++ ++.|++||+..+.....
T Consensus 280 ~~~~~~~~~~~--------~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~---------------- 335 (380)
T 3iz6_a 280 TGHQLQVYNRE--------PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN---------------- 335 (380)
T ss_dssp TTEEEEEECCC--------CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE----------------
T ss_pred CCcEEEEeccc--------ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE----------------
Confidence 87643221110 011112234589999999999999998 66999999876321100
Q ss_pred CCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
......+|... |.+++| +|+|++|++|+.|++|+||++...+
T Consensus 336 ------------------~~~~~~~h~~~--v~~l~~-s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 336 ------------------LGTLQNSHEGR--ISCLGL-SSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ------------------ECCSCSSCCCC--CCEEEE-CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ------------------EecccCCCCCc--eEEEEE-CCCCCEEEEeeCCCCEEEEecCCCc
Confidence 01112467765 999999 9999999999999999999987654
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.9e-42 Score=332.41 Aligned_cols=319 Identities=13% Similarity=0.136 Sum_probs=229.7
Q ss_pred eeeeEEcCCcCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCCCc
Q 009266 52 GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~-~g~~l~t~~~d~~i~iw~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~ 129 (538)
.+.....+|...|+||+|+| ++.+||+|+.||.|+||++.++.....+ ..+|.+.|++|+|+|. ++.+|++|+.||+
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~ 188 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGT 188 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSC
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCE
Confidence 45566778999999999999 5679999999999999999877643332 3689999999999982 5789999999999
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
|++||+.++..........+...+.+++|+|++ .+|++|+.+|.|++||++.. .+..+.. |...|.++
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~-~~~~~~~----------h~~~v~~v 256 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK-ELWNLRM----------HKKKVTHV 256 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC-BCCCSBC----------CSSCEEEE
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc-eeEEEec----------ccceEEee
Confidence 999999876544332233445578899999999 79999999999999998753 3333332 44479999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEee
Q 009266 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (538)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d 288 (538)
+|+|.+..+|++++.|+.|++||+++.+.... ......|...|++++|+|+|++|++++ ++.|++|+
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKAS------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSC------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred eecCCCceEEEEecCcceeeEEecccccccce------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence 99998667899999999999999988653211 222345788999999999999999988 66999999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-cCCeE
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRI 367 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-~dg~i 367 (538)
+.++.....+......... ............. .+..+.+ ++++.++++++ .++.|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~--~~~~~~~-~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQ---------------------HLTPIKAAWHPRY--NLIVVGR-YPDPNFKSCTPYELRTI 380 (435)
T ss_dssp SSSSSSEEEECCCCCCCCS---------------------SSCCCBCEECSSS--SCEEEEC-CCCTTSCCSSTTCCCCE
T ss_pred CCCCccceEEecccccccc---------------------cceeEEEEEcCCC--CEEEEEE-cCCCCeEEEEecCCCEE
Confidence 9875432221111000000 0000000000011 1233333 45554444333 34679
Q ss_pred EEeeccCcceeEEee-cCcceeeEE-eecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 368 FIWKKKGGELIRVIE-ADRHVVNCI-EPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 368 ~iwd~~~~~~~~~~~-~h~~~v~~~-~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
++|+..+++++..+. +|...|.++ +|+|+|++||+|+ |+.|+||+++.++.+
T Consensus 381 ~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 381 DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 999999999998875 677888887 6999999999876 889999999987653
No 46
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-41 Score=317.96 Aligned_cols=302 Identities=17% Similarity=0.208 Sum_probs=253.7
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
....+.+|.+.|++++|+|++++|++|+.+|.|+||++.+++.+..+ .+|...|.+++|+| ++++|++++.+|.|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDC--FTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTTEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999999999988777 78999999999999 9999999999999999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----CcEEEEecCCCCeeeeeeeccc---CCCCCcceee
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPI---DDRRNYMTVV 204 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~ 204 (538)
|++.+++.+.. +. |...|.+++|+|++ .+|++++.+ +.|++|++........+..... .....+....
T Consensus 101 wd~~~~~~~~~--~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 101 WDVSNGQCVAT--WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EETTTCCEEEE--EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EECCCCcEEEE--ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 99998887765 33 78899999999999 688999888 9999999987765433332211 1111222223
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CC
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE 282 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~ 282 (538)
.+.+++|+|+ +++|++++.+|.|++|++++ .+. ......|...|.+++|+|++++|++++ ++
T Consensus 177 ~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 240 (369)
T 3zwl_B 177 AATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEY---------------VDSIDLHEKSISDMQFSPDLTYFITSSRDT 240 (369)
T ss_dssp CEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEE---------------EEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEe---------------EEEEecCCCceeEEEECCCCCEEEEecCCc
Confidence 7999999997 78999999999999999987 331 223334678899999999999999887 66
Q ss_pred eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec
Q 009266 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (538)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs 362 (538)
.|++|++.++ .....+. +... +..++| +|++++|++++
T Consensus 241 ~i~v~d~~~~--------------------------------------~~~~~~~-~~~~--~~~~~~-~~~~~~l~~~~ 278 (369)
T 3zwl_B 241 NSFLVDVSTL--------------------------------------QVLKKYE-TDCP--LNTAVI-TPLKEFIILGG 278 (369)
T ss_dssp EEEEEETTTC--------------------------------------CEEEEEE-CSSC--EEEEEE-CSSSSEEEEEE
T ss_pred eEEEEECCCC--------------------------------------ceeeeec-CCCC--ceeEEe-cCCCceEEEee
Confidence 9999999863 2334444 3333 889998 99999999999
Q ss_pred cCC--------------eEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 363 DCG--------------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 363 ~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
.++ .|++|++.+++++..+.+|...|++++|+|++++|++++.||.|+||++..+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred cCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 888 899999999999999999999999999999999999999999999999987543
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-41 Score=347.64 Aligned_cols=294 Identities=14% Similarity=0.217 Sum_probs=238.2
Q ss_pred eeeeEEcCCcCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCCce----eeeeccCCCCCeEEEEEeecCCCceEEEEeC
Q 009266 52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (538)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~ 126 (538)
.....+++|.+.|++|+|+|++ .+|+||+.|++|+||++.+... ....+.+|...|.+++|+| ++++|++|+.
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~ 450 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSW 450 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEET
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeC
Confidence 5566789999999999999864 7999999999999999976432 2233479999999999999 9999999999
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (538)
||+|+||++.++..+.. +.+|...|.+++|+|++ .+|++++.|++|++|++............ .+ |...|
T Consensus 451 Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-----~~--h~~~v 520 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGG-----EG--HRDWV 520 (694)
T ss_dssp TSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSST-----TS--CSSCE
T ss_pred CCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCC-----CC--CCCcE
Confidence 99999999998877654 78999999999999999 68999999999999998654332222111 11 45579
Q ss_pred EEEEEcCCC-CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeE
Q 009266 207 NAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (538)
Q Consensus 207 ~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (538)
.+++|+|++ ..+|++++.|++|++||+++.++ ......|...|++++|+|++++|++++ ++.|
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~---------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL---------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE---------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 999999973 25899999999999999987653 233446788999999999999999988 6699
Q ss_pred EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC
Q 009266 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
++|++.++. .+..+..+. .+.+++| +|++.+|++++ +
T Consensus 586 ~iwd~~~~~--------------------------------------~~~~~~~~~---~v~~~~~-sp~~~~l~~~~-~ 622 (694)
T 3dm0_A 586 LLWDLAEGK--------------------------------------KLYSLEANS---VIHALCF-SPNRYWLCAAT-E 622 (694)
T ss_dssp EEEETTTTE--------------------------------------EEECCBCSS---CEEEEEE-CSSSSEEEEEE-T
T ss_pred EEEECCCCc--------------------------------------eEEEecCCC---cEEEEEE-cCCCcEEEEEc-C
Confidence 999998742 222232222 3889998 99998888776 5
Q ss_pred CeEEEeeccCcceeEEeecCc-------------------ceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 365 GRIFIWKKKGGELIRVIEADR-------------------HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~-------------------~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
+.|+||++.+++++..+..+. ..+++++|+|++++|++|+.||+|+||++.
T Consensus 623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 669999999998887765332 137899999999999999999999999985
No 48
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.9e-41 Score=319.07 Aligned_cols=301 Identities=14% Similarity=0.170 Sum_probs=240.6
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEE-EEecC---CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCC---CceEEEEeC
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDIL-ISGSD---DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD---DRSIVTCAA 126 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l-~t~~~---d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~---~~~l~s~~~ 126 (538)
.+.+++|...|++++|+|++..| ++|+. |+.|+||++.+++.......+|...|.+++|+| + +.+|++++.
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA--TSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT--CCTTTCCEEEEET
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC--CCCCCceEEEecC
Confidence 34567899999999999998654 56665 899999999998876665568999999999999 7 699999999
Q ss_pred CCcEEEeecccCc-eeeeeeccccCCCcEEEE------EcCCCCcEEEEEcCCCcEEEEecCCCC-eeeeeeecccCCCC
Q 009266 127 DGQVRHAQILERG-GVETKLLGKHQGRAHKLA------IEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRR 198 (538)
Q Consensus 127 dg~v~vwd~~~~~-~~~~~~~~~~~~~v~~~~------~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~ 198 (538)
+|.|++|++.++. .+. .+.+|...|.++. |+|++ .+|++++.++.|++|++++++ .+..+..+...
T Consensus 89 dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--- 162 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVY--SVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE--- 162 (357)
T ss_dssp TSCEEEECTTSCSSCSE--EECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTS---
T ss_pred CCeEEEEeCCCCCccEE--EEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCC---
Confidence 9999999999876 443 3788999999995 46777 689999999999999999887 55555443221
Q ss_pred CcceeeeeEEEE----EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC---
Q 009266 199 NYMTVVNLNAIA----IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--- 271 (538)
Q Consensus 199 ~~~~~~~v~~~~----~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--- 271 (538)
....+.+++ |+|+ +.+|++++.+|.|++|++++++.. ....+...|.+++|+|
T Consensus 163 ---~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~----------------~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 163 ---NKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALR----------------WETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ---CCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEE----------------EEEECSSCEEEEEESCSSS
T ss_pred ---CCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCcee----------------eecCCCCceEEEEcCCCCC
Confidence 123678888 6786 789999999999999999987531 1233567899999999
Q ss_pred CCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE
Q 009266 272 QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 272 ~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
++.+|++++ ++.|++|++.++..... .....+.+|... |.+++|
T Consensus 223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------------------~~~~~~~~~~~~--v~~~~~ 267 (357)
T 3i2n_A 223 SMNKLVATSLEGKFHVFDMRTQHPTKG---------------------------------FASVSEKAHKST--VWQVRH 267 (357)
T ss_dssp SCCEEEEEESTTEEEEEEEEEEETTTE---------------------------------EEEEEEECCSSC--EEEEEE
T ss_pred CCCEEEEECCCCeEEEEeCcCCCcccc---------------------------------eeeeccCCCcCC--EEEEEE
Confidence 899988888 66999999987321111 001123377776 999999
Q ss_pred ecCCCc-EEEEeccCCeEEEeeccCc-------------------ceeEEeecCcceeeEEeecCCCCeEE-EeecCCce
Q 009266 351 FGPKCE-YVVSGSDCGRIFIWKKKGG-------------------ELIRVIEADRHVVNCIEPHPHSTVLA-SSGIESDI 409 (538)
Q Consensus 351 ~s~~~~-~l~~gs~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~v 409 (538)
+|+++ +|++|+.||.|++|++.++ +++..+.+|...|++++|+|++++|+ +++.||.|
T Consensus 268 -~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 268 -LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp -ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred -CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 99998 8999999999999999754 45677889999999999999999998 89999999
Q ss_pred EEecCCCCc
Q 009266 410 KILTPNAAD 418 (538)
Q Consensus 410 ~vw~~~~~~ 418 (538)
+||++.+..
T Consensus 347 ~iw~~~~~~ 355 (357)
T 3i2n_A 347 RVLIVTKLN 355 (357)
T ss_dssp EEEEECC--
T ss_pred EEEECCCcc
Confidence 999997653
No 49
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-40 Score=317.70 Aligned_cols=314 Identities=15% Similarity=0.139 Sum_probs=241.2
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeec-cCCCCCeEEEEEeecCCCceEEEEeCCC
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~dg 128 (538)
+++.+.+.+|...|++++|+|++ ++||+|+.||.|+||++.+++....+. .+|...|.+++|+|. ++.+|++++.|+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~ 141 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRG 141 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTT
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCC
Confidence 45677889999999999999999 999999999999999999888766653 379999999999981 358999999999
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
.|++|++.............|...|.+++|+|++ .+|++++.++.|++|++ +++.+..+.. +...|.+
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~-~~~~~~~~~~----------h~~~v~~ 209 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGL-DGHEIFKEKL----------HKAKVTH 209 (383)
T ss_dssp EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEET-TSCEEEEEEC----------SSSCEEE
T ss_pred EEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEEC-CCCEEEEecc----------CCCcEEE
Confidence 9999999864333332234456889999999999 68999999999999999 4566666654 3347999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEc-CCeEEE
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYL 286 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~-~~~i~~ 286 (538)
++|+|++..+|++++.|+.|++||+++.+.... ..... .|...|.+++|+| ++++|++++ ++.|++
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS-----------YIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC-----------EEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc-----------eEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 999998434999999999999999998542111 11111 4678999999999 999999888 669999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCe
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~ 366 (538)
|++.++.....+.......... ...+. ..-+... .+..++| +|++++ +|+.|+.
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~p~~-~~~~~~~-s~dg~~--s~s~d~~ 331 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQH---------------------LTPIK-ATWHPMY-DLIVAGR-YPDDQL--LLNDKRT 331 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTT---------------------SCCCC-CEECSSS-SEEEEEC-BCCTTT--CTTCCCC
T ss_pred EECCCCcccccccccccccccc---------------------ccceE-EeccCCC-CceEEEe-cCCccc--ccCCCCe
Confidence 9998865433322111000000 00000 0111111 2556777 888888 8889999
Q ss_pred EEEeeccCcceeEEeec--CcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 367 IFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 367 i~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
|+||++.+++++..+.+ |...+..++|+|++++|++++ |+.|+||++.+
T Consensus 332 i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 332 IDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 99999999999999987 456788889999999999997 99999999875
No 50
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-41 Score=354.36 Aligned_cols=378 Identities=13% Similarity=0.099 Sum_probs=287.9
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.++|++++|++++.+|.|+||++.+++.+ ..+.+|...|++++|+|++++|++|+.+|.
T Consensus 20 ~~sp~~~~la~~~~~g~v~iwd~~~~~~~---------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYSGRVEIWNYETQVEV---------------------RSIQVTETPVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceE---------------------EEEecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence 36789999999999999999999988764 567899999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC-CCC
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-GSP 163 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 163 (538)
|+||++.+++.+..+ .+|...|++++|+| ++.+|++++.+|.|++|++.++.... ..+.+|...|.+++|+| ++
T Consensus 79 i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~- 153 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDF-EAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDP- 153 (814)
T ss_dssp EEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEE-EEEECCSSCEEEEEEETTEE-
T ss_pred EEEEECCCCcEEEEE-ecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEE-EEEcCCCCcEEEEEEEcCCC-
Confidence 999999999988877 78999999999999 99999999999999999998763332 34778999999999999 56
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC--CCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
.+|++++.+|.|++|++.++.....+..+ +...+.+++|+| + +.+|++++.+|.|++|++++++..
T Consensus 154 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~-- 221 (814)
T 3mkq_A 154 STFASGCLDRTVKVWSLGQSTPNFTLTTG---------QERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCV-- 221 (814)
T ss_dssp EEEEEEETTSEEEEEETTCSSCSEEEECC---------CTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEE--
T ss_pred CEEEEEeCCCeEEEEECCCCcceeEEecC---------CCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEE--
Confidence 78999999999999999988777666543 223689999999 6 689999999999999999886532
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCC------
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS------ 314 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------ 314 (538)
.....|...|.+++|+|++++|++++ ++.|++|++.++.....+........ ...+.+
T Consensus 222 -------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~ 286 (814)
T 3mkq_A 222 -------------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW--CIATHPTGRKNY 286 (814)
T ss_dssp -------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEE--EEEECTTCGGGE
T ss_pred -------------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEE--EEEEccCCCceE
Confidence 22334678899999999999999988 67999999988765444332221111 111111
Q ss_pred -------------------------CCccccCCCCCCC-------------------CcccCCceeeccccceeeeEEEE
Q 009266 315 -------------------------DHTSAASPSTANT-------------------DVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 315 -------------------------~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
.+..++....... ........+..+.. .+.+++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 364 (814)
T 3mkq_A 287 IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDV--FPQSLAH 364 (814)
T ss_dssp EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSS--CCSEEEE
T ss_pred EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCcc--CCceeEE
Confidence 1111111100000 00011112222332 3789998
Q ss_pred ecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceeee
Q 009266 351 FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVL 430 (538)
Q Consensus 351 ~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 430 (538)
+|+|++|++++ ++.+++|++..... .+.+.|.+++|+|++++||+++.+|.|++|+.- .+|...+.
T Consensus 365 -spdg~~la~~~-~~~~~i~~~~~~~~-----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~-------~~~~~~v~ 430 (814)
T 3mkq_A 365 -SPNGRFVTVVG-DGEYVIYTALAWRN-----KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF-------KEVTSWSV 430 (814)
T ss_dssp -CTTSSEEEEEE-TTEEEEEETTTTEE-----EEEEECSEEEECTTSSCEEEECTTCCEEEEETT-------EECTTCCC
T ss_pred -CCCCCEEEEec-CCEEEEEECccccc-----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECC-------CCccceEE
Confidence 99999999998 89999999754432 235678999999999999999999999999643 23333333
Q ss_pred ecc--cCc----eeeeccCCCCCceee
Q 009266 431 IPD--HIR----WFALGDDDDGDYYFY 451 (538)
Q Consensus 431 ~~~--~~~----~l~s~~~d~~~~~~~ 451 (538)
.+. +++ .|++++.++..+.|.
T Consensus 431 ~~~~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 431 PMHSAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp CCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred cCCcCccceecceEEEEecCCEEEEEE
Confidence 333 454 778888887766663
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=330.08 Aligned_cols=336 Identities=15% Similarity=0.194 Sum_probs=251.1
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEE-cCCcCcEEEEEEcC-CCCEEEEecCCC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNT-DGDILISGSDDR 83 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~-~g~~l~t~~~d~ 83 (538)
|+|.++.+++++ +|+.. |++ +..+ .+|.+.|++++|+| ++++||+|+.||
T Consensus 35 f~~~~~~~~~~~------~w~~~-g~~---------------------~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg 86 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGNLR-GKL---------------------IATLMENEPNSITSSAVSPGETPYLITGSDQG 86 (437)
T ss_dssp GCCCCCCCCCCC------GGGCC-CCE---------------------EEEECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred cCCccccccccc------ccccc-ceE---------------------EeeeccCCCCceEEEEECCCCCCEEEEecCCc
Confidence 556666666655 47744 554 3566 89999999999999 999999999999
Q ss_pred eEEEEECCC---Cceee-eeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc---cCceeee--------eeccc
Q 009266 84 RVILWDWKT---ERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL---ERGGVET--------KLLGK 148 (538)
Q Consensus 84 ~i~iw~~~~---~~~~~-~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~---~~~~~~~--------~~~~~ 148 (538)
+|+||++.+ +.... .....|...|++++|+| ++.+|++++.||.|++|++. +++.... ..+..
T Consensus 87 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 87 VIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred eEEEeECcccccCcccceeeeccCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 999999876 43221 22226999999999999 99999999999999999995 4433221 11222
Q ss_pred --cCCCcEEEE--EcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC
Q 009266 149 --HQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 149 --~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 224 (538)
+...+.++. ++|++ .+|++++.++.|++||+++++.+..+..+. +...|++++|+|+ +.+|++|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------h~~~v~~~~~s~~-~~~l~s~~~ 234 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSP--------RHGAVSSICIDEE-CCVLILGTT 234 (437)
T ss_dssp GSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCG--------GGCCEEEEEECTT-SCEEEEEET
T ss_pred cccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCC--------CCCceEEEEECCC-CCEEEEEcC
Confidence 556677776 55777 789999999999999999999888877521 3347999999998 799999999
Q ss_pred CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEc----CCCCEEEEEc-CCeEEEeeccCCCCCCCCC
Q 009266 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS----DQSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (538)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~ 299 (538)
||.|++||+++++... .+...|...|.+++|+ |++++|++++ ++.|++|++.++.....+.
T Consensus 235 dg~i~iwd~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 235 RGIIDIWDIRFNVLIR--------------SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp TSCEEEEETTTTEEEE--------------EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEEcCCccEEE--------------EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence 9999999999865321 2222456689999665 4678999988 5589999998765443333
Q ss_pred CCCccccccccccCCCCccccCCCCCCCCcccCCceeec--cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcce
Q 009266 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (538)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~ 377 (538)
........ ..+.+.+..+ ....+.+ |... |.+++| + ++++|++|+.|+.|++|++.++++
T Consensus 301 ~~~~~~~~--~~~~~~~~~l------------~~~~~~~~~~~~~--v~~l~~-~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 301 NSDEQPSM--EHFLPIEKGL------------EELNFCGIRSLNA--LSTISV-S-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp SSSSCCCG--GGGSCBCSSG------------GGCCCCCCCSGGG--GCCEEE-E-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred cCCCCCcc--ceeccccccc------------ccceecccccCCc--eEEEEE-C-CceEEEecCCCCeEEEEECCCccc
Confidence 22111111 1112221111 1112344 5555 899999 7 779999999999999999999988
Q ss_pred eEEeec-------------------------------------CcceeeEEeecCC--CCeEEEeecCCceEEec
Q 009266 378 IRVIEA-------------------------------------DRHVVNCIEPHPH--STVLASSGIESDIKILT 413 (538)
Q Consensus 378 ~~~~~~-------------------------------------h~~~v~~~~~s~~--~~~l~s~~~dg~v~vw~ 413 (538)
+..+.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 877765 7889999999998 77999999999999995
No 52
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-40 Score=306.38 Aligned_cols=294 Identities=18% Similarity=0.207 Sum_probs=246.0
Q ss_pred eeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcE
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
+++.+.+.+|.+.|++++| |++++|++|+.||.|++|++.+++....+ ..|...|.+++|+| ++.+|++++.+|.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDS--EKELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEET--TTTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECC--CCCEEEEecCCCeE
Confidence 3567889999999999999 99999999999999999999888876666 78999999999999 99999999999999
Q ss_pred EEeecccCce-eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 131 RHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 131 ~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
++|++..... .....+..|...|.+++|. + .+|++++.++.|++|+ .++....+.. +...+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~----------~~~~v~~~ 148 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQA----------HNASVWDA 148 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEEC----------CSSCEEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEeccc----------CCCceeEE
Confidence 9999876532 2223477899999999994 4 5899999999999999 5555555554 33479999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeec
Q 009266 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (538)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~ 289 (538)
+|+|.++.+|++++.+|.|++|+..... ......+...+.+++|+|++++++++.++.|++|++
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQNDKVI----------------KTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDM 212 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTEEE----------------EEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEET
T ss_pred EEccCCCCEEEEEECCCCEEEEecCceE----------------EEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEEC
Confidence 9998447899999999999999954322 222333678899999999999544455779999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEE
Q 009266 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (538)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~i 369 (538)
.+ ...+..+.+|... |.+++| +|++ +|++++.+|.|++
T Consensus 213 ~~--------------------------------------~~~~~~~~~~~~~--i~~~~~-~~~~-~l~~~~~dg~v~i 250 (313)
T 3odt_A 213 HT--------------------------------------GDVLRTYEGHESF--VYCIKL-LPNG-DIVSCGEDRTVRI 250 (313)
T ss_dssp TT--------------------------------------CCEEEEEECCSSC--EEEEEE-CTTS-CEEEEETTSEEEE
T ss_pred Cc--------------------------------------hhhhhhhhcCCce--EEEEEE-ecCC-CEEEEecCCEEEE
Confidence 86 3456677788876 999999 9999 6889999999999
Q ss_pred eeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccccc
Q 009266 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422 (538)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 422 (538)
|++.+++++..+..|...|++++|+|+++ |++++.||.|++|++.+++....
T Consensus 251 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 251 WSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp ECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred EECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 99999999999999999999999999998 66799999999999998766443
No 53
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=319.18 Aligned_cols=363 Identities=16% Similarity=0.176 Sum_probs=253.5
Q ss_pred cCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCCcee
Q 009266 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVK 96 (538)
Q Consensus 18 ~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~t~~~d~~i~iw~~~~~~~~ 96 (538)
.++.++||++.+++. ...+++|.+.|++++|+| ++++||+|+.||.|+||++.++...
T Consensus 21 ~~~~~~v~~~~~~~~---------------------~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~ 79 (408)
T 4a11_B 21 AESTRRVLGLELNKD---------------------RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQ 79 (408)
T ss_dssp HHHHHHHHTEEECTT---------------------EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSS
T ss_pred ccCcceeeccccCcc---------------------eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 456788888876654 366788999999999999 9999999999999999999988765
Q ss_pred eeec------------cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCC-
Q 009266 97 LSFH------------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP- 163 (538)
Q Consensus 97 ~~~~------------~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 163 (538)
..+. .+|...|.+++|+|. ++.+|++++.+|.|++|++.++..... + .+...+.++.|+|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 155 (408)
T 4a11_B 80 SYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADV--F-NFEETVYSHHMSPVSTK 155 (408)
T ss_dssp SCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEE--E-ECSSCEEEEEECSSCSS
T ss_pred ceEeccccccccccccccCCCcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCcccee--c-cCCCceeeeEeecCCCC
Confidence 5442 359999999999982 456999999999999999998876654 3 2677899999998652
Q ss_pred -cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccC-C
Q 009266 164 -HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG-S 241 (538)
Q Consensus 164 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~ 241 (538)
.+|++++.++.|++|++++++.+..+.. +...|.+++|+|++..+|++++.+|.|++|++++..... .
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQG----------HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECC----------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecC----------CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 4899999999999999999988777664 334799999999855579999999999999998764211 1
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
..................|...|.+++|+|++++|++++ ++.|++|++.++.........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------- 286 (408)
T 4a11_B 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK------------------- 286 (408)
T ss_dssp CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-------------------
T ss_pred ccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccc-------------------
Confidence 100001111122333456788999999999999999887 669999999886443221100
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeE
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 400 (538)
........ ....+. ...+..+++++.++.|++|++.+++++..+.+|...|++++|+|++++|
T Consensus 287 --------------~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 349 (408)
T 4a11_B 287 --------------VCNNSKKG-LKFTVS--CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL 349 (408)
T ss_dssp --------------CCCCCSSC-CCCEEC--CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred --------------cccccccc-ceeEEe--cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence 00000010 011222 3445567777889999999999999999999999999999999999999
Q ss_pred EEeecCCceEEecCCCCcccccCccceeeeecc--cCceeeeccCCCCCceee
Q 009266 401 ASSGIESDIKILTPNAADRATLPTNIEQVLIPD--HIRWFALGDDDDGDYYFY 451 (538)
Q Consensus 401 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~ 451 (538)
++++.||.|++|++.+.+.............+. ......+.+.++....|.
T Consensus 350 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 350 YSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEEETTSCEEEEEECC-------------------------------------
T ss_pred EEECCCCeEEEEeCCCCCccCCCCceEeccccccccceeecccCccCceeecC
Confidence 999999999999999876644322222222222 222344455555555553
No 54
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.5e-40 Score=305.13 Aligned_cols=276 Identities=20% Similarity=0.323 Sum_probs=233.3
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.++|++++|++|+.||.|+||++.+++.. ..+.+|...|.+++|+|++++|++|+.|+.
T Consensus 30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 30 KFSPNGEWLASSSADKLIKIWGAYDGKFE---------------------KTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EECCCCCEEEEeeCCCeEEEEeCCCcccc---------------------hhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 35678999999999999999999887764 567899999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|++|++.+++.+..+ .+|...|.+++|+| ++.+|++++.++.|++|++.+++.+.. +..|...|.+++|+|++ .
T Consensus 89 i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~ 162 (312)
T 4ery_A 89 LKIWDVSSGKCLKTL-KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDG-S 162 (312)
T ss_dssp EEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTS-S
T ss_pred EEEEECCCCcEEEEE-cCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCC-C
Confidence 999999999988777 78999999999999 999999999999999999998877655 78899999999999998 6
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (538)
+|++++.|+.|++||+++++.+..+... +...+.+++|+|+ +.+|++++.+|.|++|++++++.....
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 230 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDD---------DNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKCLKTY-- 230 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCS---------SCCCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEE--
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEecc---------CCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE--
Confidence 8999999999999999998877655322 2336899999997 789999999999999999987643221
Q ss_pred CCCCcccCCCCccCCCc---cceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 245 GQPADYFCPPNLIGDEQ---VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
..|. ..+......+++.+|++++ ++.|++|++.+
T Consensus 231 -------------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~----------------------------- 268 (312)
T 4ery_A 231 -------------TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----------------------------- 268 (312)
T ss_dssp -------------CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT-----------------------------
T ss_pred -------------EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC-----------------------------
Confidence 1111 1222333346788899888 66999999987
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec--cCCeEEEeecc
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKK 373 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs--~dg~i~iwd~~ 373 (538)
...+..+.+|... |.+++| +|++++|++++ .|+.|++|+..
T Consensus 269 ---------~~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 269 ---------KEIVQKLQGHTDV--VISTAC-HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---------CCEEEEECCCSSC--EEEEEE-CSSSSEEEEEECTTTCCEEEEECC
T ss_pred ---------chhhhhhhccCCc--EEEEee-cCcCCceEEEEccCCccEEEecCC
Confidence 4456778888876 899999 99999999986 69999999863
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.3e-41 Score=317.46 Aligned_cols=309 Identities=13% Similarity=0.127 Sum_probs=246.6
Q ss_pred EcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEee
Q 009266 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd 134 (538)
+..|..+|++++|+|++++||+|+.++.|+||++.+++ .+..+ .+|...|++++|+| ++.+|++++.+|.|++|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEET--TTTEEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeC--CCCEEEEEcCCCeEEEEE
Confidence 45699999999999999999999999999999999886 66666 78999999999999 999999999999999999
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
+.+++......+..|...|.+++|+|++ .+|++++.++.|++|++..+........... . +...|.+++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~----~--~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKK----P--IRSTVLSLDWHPN 153 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECT----T--CCSCEEEEEECTT
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeec----c--cCCCeeEEEEcCC
Confidence 9888766665567899999999999998 7899999999999999998874322221110 1 3457999999997
Q ss_pred CCcEEEEEeCCCeEEEEEcCCccccCCCCC---CCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeecc
Q 009266 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDF---GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (538)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (538)
+.+|++++.+|.|++|+++.......... +..............|...|.+++|+|++++|++++ ++.|++|++.
T Consensus 154 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 154 -SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp -SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred -CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 78999999999999999864432111000 000000111223335678999999999999999888 6699999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
+ ...+..+..|... |.+++| +|++++|++| .++.|++|
T Consensus 233 ~--------------------------------------~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~-~d~~i~i~ 270 (372)
T 1k8k_C 233 K--------------------------------------KMAVATLASETLP--LLAVTF-ITESSLVAAG-HDCFPVLF 270 (372)
T ss_dssp G--------------------------------------TTEEEEEECSSCC--EEEEEE-EETTEEEEEE-TTSSCEEE
T ss_pred C--------------------------------------CceeEEEccCCCC--eEEEEE-ecCCCEEEEE-eCCeEEEE
Confidence 7 3455677777765 899999 9999999988 89999999
Q ss_pred eccC--cce--------------------------------e------EEe-ecCcceeeEEeec-CCC---CeEEEeec
Q 009266 371 KKKG--GEL--------------------------------I------RVI-EADRHVVNCIEPH-PHS---TVLASSGI 405 (538)
Q Consensus 371 d~~~--~~~--------------------------------~------~~~-~~h~~~v~~~~~s-~~~---~~l~s~~~ 405 (538)
++.+ ++. . ..+ .+|...|++++|+ +++ ++|+|++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~ 350 (372)
T 1k8k_C 271 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 350 (372)
T ss_dssp EEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET
T ss_pred EccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecC
Confidence 9987 421 0 223 4899999999976 666 89999999
Q ss_pred CCceEEecCCCCc
Q 009266 406 ESDIKILTPNAAD 418 (538)
Q Consensus 406 dg~v~vw~~~~~~ 418 (538)
||.|+||++.+++
T Consensus 351 Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 351 DGGMSIWDVRSLE 363 (372)
T ss_dssp TSEEEEEEHHHHH
T ss_pred CCceEEEEecChh
Confidence 9999999987653
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.3e-40 Score=319.68 Aligned_cols=305 Identities=21% Similarity=0.296 Sum_probs=258.6
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
.+++++|++|+.||+|+||++.+++++ ..+.+|.+.|++++|+ +.+|++|+.||+|+
T Consensus 126 ~~~g~~l~sg~~dg~i~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 126 QFCGNRIVSGSDDNTLKVWSAVTGKCL---------------------RTLVGHTGGVWSSQMR--DNIIISGSTDRTLK 182 (445)
T ss_dssp EEETTEEEEEETTSCEEEEETTTCCEE---------------------EECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred EEcCCEEEEEECCCcEEEEECCCCcEE---------------------EEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence 456889999999999999999988764 5678999999999998 67999999999999
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEE
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
+|++.+++.+..+ .+|...|.+++|++ .+|++++.+|.|++|++.+++.+.. +.+|...|.+++| ++ .+|
T Consensus 183 vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~--~~-~~l 252 (445)
T 2ovr_B 183 VWNAETGECIHTL-YGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQY--DG-RRV 252 (445)
T ss_dssp EEETTTTEEEEEE-CCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEE--EECCSSCEEEEEE--CS-SCE
T ss_pred EEECCcCcEEEEE-CCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEE--EcCCcccEEEEEE--CC-CEE
Confidence 9999999988877 79999999999964 6899999999999999998877655 7789999999999 44 578
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 246 (538)
++++.+|.|++||+++++.+..+..+ ...|.+++| + +.+|++++.+|.|++|++++++..
T Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~--~-~~~l~~~~~d~~i~i~d~~~~~~~------- 312 (445)
T 2ovr_B 253 VSGAYDFMVKVWDPETETCLHTLQGH----------TNRVYSLQF--D-GIHVVSGSLDTSIRVWDVETGNCI------- 312 (445)
T ss_dssp EEEETTSCEEEEEGGGTEEEEEECCC----------SSCEEEEEE--C-SSEEEEEETTSCEEEEETTTCCEE-------
T ss_pred EEEcCCCEEEEEECCCCcEeEEecCC----------CCceEEEEE--C-CCEEEEEeCCCeEEEEECCCCCEE-------
Confidence 99999999999999999887777643 337899999 3 679999999999999999987532
Q ss_pred CCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.....|...+.++.++ +.+|++++ ++.|++|++.++
T Consensus 313 --------~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~--------------------------------- 349 (445)
T 2ovr_B 313 --------HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG--------------------------------- 349 (445)
T ss_dssp --------EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---------------------------------
T ss_pred --------EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC---------------------------------
Confidence 2233456778888775 56787777 679999999763
Q ss_pred CCCcccCCceeec---cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEe-----ecCcceeeEEeecCCC
Q 009266 326 NTDVRIAPQVYKG---HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEPHPHS 397 (538)
Q Consensus 326 ~~~~~~~~~~~~~---~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~s~~~ 397 (538)
..+..+.+ |... |.+++| + +++|++|+.||.|++|++.+++.+..+ ..|.+.|++++|+|++
T Consensus 350 -----~~~~~~~~~~~~~~~--v~~~~~-~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 350 -----QCLQTLQGPNKHQSA--VTCLQF-N--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp -----CEEEEECSTTSCSSC--EEEEEE-C--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred -----cEEEEEccCCCCCCC--EEEEEE-C--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE
Confidence 33445554 4444 888888 4 679999999999999999999999888 4678899999999999
Q ss_pred CeEEEeecCCc----eEEecCCCC
Q 009266 398 TVLASSGIESD----IKILTPNAA 417 (538)
Q Consensus 398 ~~l~s~~~dg~----v~vw~~~~~ 417 (538)
.+||+|+.||+ |.||++...
T Consensus 420 ~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 420 LVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEcccCCCCccEEEEEECCCC
Confidence 99999999998 999998753
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-40 Score=315.10 Aligned_cols=312 Identities=17% Similarity=0.245 Sum_probs=231.0
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
-|+|++++||+|+ +++++||++.+|+++.......... . ....+ .......+...|++++|+|+|++||+|+.|+.
T Consensus 71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~-~~~~~-~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 71 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-K-DPENL-NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc-c-ccccc-cccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence 4678999999987 6899999999988763311100000 0 00000 00111234456999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC-CCC
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-GSP 163 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 163 (538)
|+||++.+++.+..+ .+|...|++++|+| ++.+|++++.|++|++|++.+++.... + .+...+.+++|+| ++
T Consensus 147 i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~--~-~~~~~v~~~~~~~~~~- 219 (393)
T 1erj_A 147 IRIWDIENRKIVMIL-QGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLT--L-SIEDGVTTVAVSPGDG- 219 (393)
T ss_dssp EEEEETTTTEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE--E-ECSSCEEEEEECSTTC-
T ss_pred EEEEECCCCcEEEEE-ccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEE--E-EcCCCcEEEEEECCCC-
Confidence 999999999887776 79999999999999 999999999999999999998876554 3 2567799999999 55
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 243 (538)
.+|++++.|+.|++||++++..+..+..... ...+ |...|.+++|+|+ +.+|++|+.|+.|++|++++........
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~-~~~~--h~~~v~~v~~~~~-g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENE-SGTG--HKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC-------CC--CSSCEEEEEECTT-SSEEEEEETTSEEEEEEC----------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeeccccc-CCCC--CCCCEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 7999999999999999999887766532111 0111 4558999999997 7899999999999999998754321110
Q ss_pred CCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 009266 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (538)
. +....+ .....+|...|.+++|+|++++|++++ ++.|++|++.+
T Consensus 296 ~--~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~------------------------------- 341 (393)
T 1erj_A 296 T--PNSGTC-EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------------------------------- 341 (393)
T ss_dssp -------CE-EEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT-------------------------------
T ss_pred C--CCCCcc-eEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------------------
Confidence 0 000001 112345678899999999999999988 56999999887
Q ss_pred CCCCCCcccCCceeeccccceeeeEEEEecC------CCcEEEEeccCCeEEEeeccCc
Q 009266 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGP------KCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~------~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
...+..+.+|... |.+++| ++ ++++||+|+.||+|+||++...
T Consensus 342 -------~~~~~~l~~h~~~--v~~v~~-~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 342 -------GNPLLMLQGHRNS--VISVAV-ANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp -------CCEEEEEECCSSC--EEEEEE-CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred -------CeEEEEECCCCCC--EEEEEe-cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 3456778889887 889987 54 7899999999999999998643
No 58
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-40 Score=307.27 Aligned_cols=285 Identities=15% Similarity=0.200 Sum_probs=209.1
Q ss_pred eEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEE-cC-CcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DK-HRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
+|++|+.|++|+||++.++... ....+ .+ |...|++|+|+|++++||+|+.|++|+||+
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~-------------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFT-------------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCE-------------------EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCEEEEEEecCCCeE-------------------EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999999999999999865321 12344 34 999999999999999999999999999999
Q ss_pred CCC-------CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc--eeeeeeccccCCCcEEEEEcC
Q 009266 90 WKT-------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 90 ~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~ 160 (538)
+.. .+.+..+ .+|...|++++|+| ++++|++|+.|++|++|++.... ......+.+|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 87 KEESADRTFEMDLLAII-EGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp C-------CCCEEEEEE-C----CEEEEEECT--TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred cccCcCccccceeEEEE-cCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 853 2333444 79999999999999 99999999999999999995332 122344788999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEecCCC--CeeeeeeecccCCCCCcceeeeeEEEEEcCCC-CcEEEEEeCCCeEEEEEcCCcc
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRTG--AATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
++ .+|++++.|++|++|++.++ +++..+.. |...|.+++|+|++ +.+|++++.|++|++|+++...
T Consensus 164 ~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 164 SE-ALLASSSYDDTVRIWKDYDDDWECVAVLNG----------HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp SS-SEEEEEETTSCEEEEEEETTEEEEEEEECC----------CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred CC-CEEEEEcCCCeEEEEECCCCCeeEEEEccC----------CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 98 78999999999999998876 34444443 34479999999963 4689999999999999998653
Q ss_pred ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCC
Q 009266 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
.... ....+...+...|...|.+++|++++ +|++++ ++.|++|+..++.
T Consensus 233 ~~~~------~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~----------------------- 282 (330)
T 2hes_X 233 EDDQ------QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE----------------------- 282 (330)
T ss_dssp TTSC------EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE-----------------------
T ss_pred cccc------ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc-----------------------
Confidence 1100 00001122223477899999999877 455555 7799999986521
Q ss_pred ccccCCCCCCCCcccCC-ceeeccccceeeeEEEEecC--CCcEEEEeccCCeEEEeeccC
Q 009266 317 TSAASPSTANTDVRIAP-QVYKGHRNCVTVKGVNFFGP--KCEYVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~v~~~s~--~~~~l~~gs~dg~i~iwd~~~ 374 (538)
.... ..+.+|... .|.+++| +| ++++||+|+.||+|+||++..
T Consensus 283 -------------~~~~~~~~~~h~~~-~v~~v~~-~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 283 -------------WKVFAKRALCHGVY-EINVVKW-LELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -------------EEEEEEESCTTTTS-CEEEEEE-C-----CCEEEEETTSEEEEEEC--
T ss_pred -------------eEEEeccccccccc-eEEEEEE-ecCCCceEEEEecCCCcEEEEEecc
Confidence 0111 122455541 3889998 88 689999999999999999864
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-39 Score=319.04 Aligned_cols=307 Identities=20% Similarity=0.240 Sum_probs=251.7
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
+++++|++|+.||+|+||++.+++.+ ..+.+|.+.|++++|+|++ +|++|+.||+|++
T Consensus 130 ~~~~~l~sgs~dg~i~vwd~~~~~~~---------------------~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 130 FEDNYVITGADDKMIRVYDSINKKFL---------------------LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EETTEEEEEETTSCEEEEETTTTEEE---------------------EEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred ECCCEEEEEcCCCcEEEEECCCCcEE---------------------EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 35679999999999999999988764 6688999999999999988 9999999999999
Q ss_pred EECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee---------------------eeec
Q 009266 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE---------------------TKLL 146 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~---------------------~~~~ 146 (538)
|++.+++.+..+ .+|...|.+++|++..++.+|++++.+|+|++|++.+..... ...+
T Consensus 188 wd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 999999988777 789999999999964478999999999999999998765331 2346
Q ss_pred cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC
Q 009266 147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (538)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 226 (538)
.+|...|.++. +++ .+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|+ +.+|++|+.||
T Consensus 267 ~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~sg~~dg 332 (464)
T 3v7d_B 267 RGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGH----------TDRIYSTIYDHE-RKRCISASMDT 332 (464)
T ss_dssp CCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEEEEETT-TTEEEEEETTS
T ss_pred cCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCC----------CCCEEEEEEcCC-CCEEEEEeCCC
Confidence 77888888874 555 68999999999999999999888777543 347999999997 78999999999
Q ss_pred eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccc
Q 009266 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVST 305 (538)
Q Consensus 227 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~ 305 (538)
.|++|++++++.. .....|...|.+++|+ +.+|++++ ++.|++|++.+..
T Consensus 333 ~i~vwd~~~~~~~---------------~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~------------ 383 (464)
T 3v7d_B 333 TIRIWDLENGELM---------------YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS------------ 383 (464)
T ss_dssp CEEEEETTTTEEE---------------EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC------------
T ss_pred cEEEEECCCCcEE---------------EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc------------
Confidence 9999999987632 2334577899999998 46777777 6799999987631
Q ss_pred cccccccCCCCccccCCCCCCCCcccCCceeec-cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEE-eec
Q 009266 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEA 383 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~-~~~ 383 (538)
..+.. +... +..++| +|++++|++|+ +|.|++|++.+++++.. +..
T Consensus 384 ----------------------------~~~~~~~~~~--~~~~~~-~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~ 431 (464)
T 3v7d_B 384 ----------------------------RKFSYHHTNL--SAITTF-YVSDNILVSGS-ENQFNIYNLRSGKLVHANILK 431 (464)
T ss_dssp ----------------------------EEEEEECTTC--CCEEEE-EECSSEEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred ----------------------------eeeeecCCCC--ccEEEE-EeCCCEEEEec-CCeEEEEECCCCcEEehhhcc
Confidence 12222 2222 566777 99999999998 89999999999999976 667
Q ss_pred CcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 384 DRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
|...|.+++|+ ...++++++.+|.+.+|-
T Consensus 432 ~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 432 DADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 88999999997 345666667777666553
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-40 Score=315.13 Aligned_cols=319 Identities=10% Similarity=0.122 Sum_probs=245.2
Q ss_pred eEEcCCcCcEEEEEEcCC----CCEEEEecCCCeEEEEECCCCceeeeec----cCCCCCeEEEEEeecCC----CceEE
Q 009266 55 AKLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTD----DRSIV 122 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~----g~~l~t~~~d~~i~iw~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~----~~~l~ 122 (538)
..+.+|...|++++|+|+ ...+++++.++.|+||++.+++.+..+. ..|...|++++|+| + +.+|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTSHPLLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTCCEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCCCCEEE
Confidence 345589999999999984 4566666667799999999887665542 12668899999999 7 67999
Q ss_pred EEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC-CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcc
Q 009266 123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (538)
Q Consensus 123 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (538)
+++.+|.|++|++.+++.+.. +.+|...|.+++|+| ++ .+|++++.||.|++|++++++.+..+.....
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------- 159 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIFGGVEG------- 159 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEECSTTS-------
T ss_pred EecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEeccccc-------
Confidence 999999999999998877655 778999999999999 66 7999999999999999999987776632111
Q ss_pred eeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCC-------------CCCCcccCCCCccCCCccceEEEE
Q 009266 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF-------------GQPADYFCPPNLIGDEQVGITGLA 268 (538)
Q Consensus 202 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~~ 268 (538)
+...|.+++|+|+ +.+|++++.+|.|++|++++++....... ...............|...|.+++
T Consensus 160 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 160 HRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp CSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred ccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 4458999999997 78999999999999999998754321100 000000011112233778999999
Q ss_pred EcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeE
Q 009266 269 FSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKG 347 (538)
Q Consensus 269 ~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (538)
|+ +.+|++++ ++.|++|++.+......... ........+..+.+|... |.+
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~--v~~ 290 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIK------------------------PSESNVTILGRFDYSQCD--IWY 290 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCC------------------------TTCCCEEEEEEEECSSCC--SSC
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccc------------------------cCCcchheeccccccCCc--EEE
Confidence 99 66888877 67999999987543211100 000112335667777776 888
Q ss_pred EEEecCC--CcEEEEeccCCeEEEeeccCccee----EEeecC--cceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 348 VNFFGPK--CEYVVSGSDCGRIFIWKKKGGELI----RVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 348 v~~~s~~--~~~l~~gs~dg~i~iwd~~~~~~~----~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
++| +|+ +++|++|+.+|.|++|++.+++++ ..+.+| ...|++++|+|++++|++++.||.|+||++.
T Consensus 291 ~~~-s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 291 MRF-SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCC-EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEE-cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 998 999 999999999999999999988644 477777 6899999999999999999999999999985
No 61
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4e-40 Score=308.59 Aligned_cols=319 Identities=13% Similarity=0.120 Sum_probs=259.5
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
|.+.|.+++|+|+|++|+++...+.+.+|........... .+|...|++++|+| ++++|++++ +|.|++|++.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCCCC
Confidence 5678999999999999999988887777766554444444 47999999999999 999999999 9999999998765
Q ss_pred eeee---eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee--eeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 140 GVET---KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 140 ~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
.... .....|...|.+++|+|++ ++|++++.++.|++|++.+++.. ..+.. +...|.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTS----------SAPACYALAISPD 152 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEEC----------SSSCEEEEEECTT
T ss_pred ceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeeccc----------CCCceEEEEECCC
Confidence 3322 2223788999999999998 78999999999999999988733 33332 3347999999997
Q ss_pred CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCC
Q 009266 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (538)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (538)
+.+|++++.+|.|++|++++++.. .....|...|.+++|+|++++|++++ ++.|++|++.++
T Consensus 153 -~~~l~~~~~dg~v~~~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 215 (337)
T 1gxr_A 153 -SKVCFSCCSDGNIAVWDLHNQTLV---------------RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG- 215 (337)
T ss_dssp -SSEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-
T ss_pred -CCEEEEEeCCCcEEEEeCCCCcee---------------eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-
Confidence 789999999999999999887532 22334678899999999999999887 669999998763
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
.....+. +... +.+++| +|++++|++++.++.|++|++.
T Consensus 216 -------------------------------------~~~~~~~-~~~~--v~~~~~-s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 216 -------------------------------------RQLQQHD-FTSQ--IFSLGY-CPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp -------------------------------------EEEEEEE-CSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETT
T ss_pred -------------------------------------ceEeeec-CCCc--eEEEEE-CCCCCEEEEEcCCCcEEEEECC
Confidence 2222232 3333 889998 9999999999999999999998
Q ss_pred CcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceeeeecc--cCc-eeeeccCCCCCcee
Q 009266 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYF 450 (538)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~ 450 (538)
+++.. .+..|...|.+++|+|++++|++++.+|.|++|++.+++......|...+..+. +++ +|++++.++....|
T Consensus 255 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 255 KPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp SSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 87754 667899999999999999999999999999999999988776666777777665 555 99999999988777
Q ss_pred ec
Q 009266 451 YD 452 (538)
Q Consensus 451 ~~ 452 (538)
.-
T Consensus 334 ~~ 335 (337)
T 1gxr_A 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 62
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9e-40 Score=306.58 Aligned_cols=295 Identities=19% Similarity=0.243 Sum_probs=236.5
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
.+|.|..+++|+||+.|++|+||++.+++.. ...+.+.+++|...|++++|+|++++|++|+.|
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDETN----------------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------cceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 3565556889999999999999999866542 113457789999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
+.|++|+.......... ..+...+..+.+++ .+.+|++++.|+.+++|++...... ...+.+|...+..++|++++
T Consensus 108 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp SEEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEE-EECSSSCSSCEEEEEECSCS
T ss_pred ccceEEeecccceeeee-cCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceE-EEEeccccCcccceEEccCC
Confidence 99999999988776666 67888999999999 9999999999999999998765443 34467899999999999875
Q ss_pred C-cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 163 P-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 163 ~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
. .++++++.|+.|++|++++++.+..+..+ ...|++++|+|+ +++|++|+.||.|++||+++.+....
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h----------~~~v~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGH----------TGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCC----------CCcEEEEEECCC-CCEEEEEeCCCeEEEEEeccCceeee
Confidence 3 46789999999999999999887776643 347999999997 78999999999999999998753211
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
. .+...|.+++|+|++.+++++.++.|++|++.+......+..
T Consensus 253 ---------------~-~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------------------- 295 (340)
T 4aow_A 253 ---------------L-DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ--------------------- 295 (340)
T ss_dssp ---------------E-ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC---------------------
T ss_pred ---------------e-cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc---------------------
Confidence 1 124579999999999999888899999999876432211110
Q ss_pred CCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
........+|... |++++| +|+|++||+|+.||.|+||++.+|+
T Consensus 296 --------~~~~~~~~~h~~~--v~~l~~-s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 296 --------EVISTSSKAEPPQ--CTSLAW-SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp --------C-------CCCCC--EEEEEE-CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred --------cceeeeccCCCCC--EEEEEE-CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 1112334456665 999999 9999999999999999999999885
No 63
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-39 Score=333.09 Aligned_cols=302 Identities=18% Similarity=0.213 Sum_probs=233.1
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+|.+.++++|+||+.|++|+||++.++.... ....+.+.+|...|++++|+|++++|++|+.|+
T Consensus 389 ~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~----------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 389 ATPIDNADIIVSASRDKSIILWKLTKDDKAY----------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp ECCTTCCSEEEEEETTSEEEEEECCCSTTCS----------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EecCCCCCEEEEEeCCCcEEEEEccCCCccc----------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4556667899999999999999998643210 122467889999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee-eeccccCCCcEEEEEcCCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 162 (538)
+|+||++.++..+..+ .+|...|.+++|+| ++.+|++++.|++|++|++........ ....+|...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRF-VGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred cEEEEECCCCcceeEE-eCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 9999999999888777 79999999999999 999999999999999999865433221 1235788999999999986
Q ss_pred C-cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCC
Q 009266 163 P-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 163 ~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
. .+|++++.|++|++||+++++....+.. |...|++++|+|+ +++|++|+.||.|++||+++++....
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----------h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~ 598 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAG----------HTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYS 598 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEE
Confidence 2 4799999999999999999888777654 3347999999997 79999999999999999998764211
Q ss_pred CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
+ .+...|.+++|+|++.+|+++.++.|++|++.++.....+..........
T Consensus 599 --------------~--~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~------------- 649 (694)
T 3dm0_A 599 --------------L--EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEK------------- 649 (694)
T ss_dssp --------------C--BCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC------------------
T ss_pred --------------e--cCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccc-------------
Confidence 1 12457999999999999999999999999998754322211100000000
Q ss_pred CCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
.........+.....+.+++| +|+|++|++|+.||+|+||++.
T Consensus 650 --------~~~~~~~~~~~~~~~~~~l~~-spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 650 --------ADNSGPAATKRKVIYCTSLNW-SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------------------CCCCEEEEEE-CTTSSEEEEEETTSEEEEEEC-
T ss_pred --------ccccccccCCceeEEeeeEEE-cCCCCEEEEEcCCCeEEEEecc
Confidence 000000001111123788998 9999999999999999999985
No 64
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-39 Score=297.92 Aligned_cols=269 Identities=15% Similarity=0.237 Sum_probs=202.0
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCC--ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
+..+.+|.+.|++++|+|+|++||+|+.|++|+||++..+ +.+.++ .+|..+|++++|+|..++.+|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 3467899999999999999999999999999999999753 455555 8999999999998622388999999999999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCC--CCcEEEEEcCCCcEEEEecCCCCee--eeeeecccCCCCCcceeeeeE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~ 207 (538)
||++.++.......+..|...|.+++|+|+ + .+|++++.|+.|++|+++++... ..+.. +...|.
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~----------h~~~v~ 149 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIIDA----------HAIGVN 149 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEEC----------CSSCEE
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeeec----------ccCccc
Confidence 999987754444457789999999999997 5 68999999999999999876432 22222 344799
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEE
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~ 286 (538)
+++|+|.. ..- . + .. ...+++++|++++ ++.|++
T Consensus 150 ~~~~~p~~-~~~-~----~--------~~-------------------------------~~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 150 SASWAPAT-IEE-D----G--------EH-------------------------------NGTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp EEEECCCC---------------------------------------------------------CCEEEEEETTSCEEE
T ss_pred eEeecCCc-ccc-c----c--------cC-------------------------------CCCCCcceEEEEcCCCcEEE
Confidence 99999962 100 0 0 00 0012344455544 345555
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC---cEEEEecc
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSD 363 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~---~~l~~gs~ 363 (538)
|++.++... ......+.+|... |.+++| +|++ ++||+|+.
T Consensus 185 wd~~~~~~~----------------------------------~~~~~~l~~H~~~--V~~v~~-sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 185 WKYNSDAQT----------------------------------YVLESTLEGHSDW--VRDVAW-SPTVLLRSYMASVSQ 227 (297)
T ss_dssp EEEETTTTE----------------------------------EEEEEEECCCSSC--EEEEEE-CCCCSSSEEEEEEET
T ss_pred EEEcCCCce----------------------------------EEEEEEecCCCCc--eEEEEE-CCCCCCceEEEEEEC
Confidence 555432100 1123466778876 999999 9984 89999999
Q ss_pred CCeEEEeeccCcce---eEEe--ecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 364 CGRIFIWKKKGGEL---IRVI--EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 364 dg~i~iwd~~~~~~---~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
|++|+||++.+... ...+ ..|...|.+++|+|++++||+++.|+.|+||++..
T Consensus 228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999977531 2233 46788999999999999999999999999999763
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-40 Score=315.88 Aligned_cols=305 Identities=14% Similarity=0.157 Sum_probs=224.9
Q ss_pred EcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCC--ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEee
Q 009266 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd 134 (538)
++.|.++|++++|+|++++||+|+.++.|+||++.++ +.+..+ .+|...|++++|+| ++++|++++.|++|++|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAP--KSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECT--TTCCEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeC--CCCEEEEEeCCCeEEEEE
Confidence 4457789999999999999999999999999999988 555555 78999999999999 999999999999999999
Q ss_pred cccCc-eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe---eeeeeecccCCCCCcceeeeeEEEE
Q 009266 135 ILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 135 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
+.++. ......+..|...|.+++|+|++ .+|++++.++.|++|++++++. ...+... +...|.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------h~~~v~~~~ 153 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------LRSTILSLD 153 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSS---------CCSCEEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecc---------cCCCeEEEE
Confidence 98876 33334477899999999999998 6899999999999999998863 3333320 344799999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCC---CCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEE
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF---GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~ 286 (538)
|+|+ +.+|++++.|+.|++|++........... +.......+.... .|...|.+++|+|++++|++++ ++.|++
T Consensus 154 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 154 WHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp ECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 9997 78999999999999999975543221110 0010001111222 6788999999999999999888 669999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCe
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~ 366 (538)
|++.++... ...+..+.+|... |.+++| +|++++|++|+.++.
T Consensus 232 wd~~~~~~~----------------------------------~~~~~~~~~~~~~--v~~~~~-s~~~~~l~~~~~~~~ 274 (377)
T 3dwl_C 232 AYPSAPEQP----------------------------------PRALITVKLSQLP--LRSLLW-ANESAIVAAGYNYSP 274 (377)
T ss_dssp CEECSTTSC----------------------------------EEECCCEECSSSC--EEEEEE-EETTEEEEEESSSSE
T ss_pred EECCCCCCc----------------------------------ceeeEeecCCCCc--eEEEEE-cCCCCEEEEEcCCcE
Confidence 999874220 1125677788876 899999 999999999987776
Q ss_pred EEEeecc-Cc-cee----------------------------------EEe----------------ecCcceeeEEeec
Q 009266 367 IFIWKKK-GG-ELI----------------------------------RVI----------------EADRHVVNCIEPH 394 (538)
Q Consensus 367 i~iwd~~-~~-~~~----------------------------------~~~----------------~~h~~~v~~~~~s 394 (538)
+ +|+.. ++ +.. ..+ ..|...|+++++.
T Consensus 275 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~ 353 (377)
T 3dwl_C 275 I-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPY 353 (377)
T ss_dssp E-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEE
T ss_pred E-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEecc
Confidence 6 55543 21 000 001 1388999999976
Q ss_pred CCCC----eEEEeecCCceEEecC
Q 009266 395 PHST----VLASSGIESDIKILTP 414 (538)
Q Consensus 395 ~~~~----~l~s~~~dg~v~vw~~ 414 (538)
+... .|+||+.||.|+||++
T Consensus 354 ~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 354 AGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEETTEEEEEEEEETTSEEEEECC
T ss_pred CCCCCceEEEEeecCCCcEEEecC
Confidence 6543 5999999999999985
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.8e-39 Score=311.41 Aligned_cols=297 Identities=16% Similarity=0.285 Sum_probs=226.4
Q ss_pred CCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------eeeeeccCCC------------CCeEEEEEeec
Q 009266 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-----------VKLSFHSGHN------------DNVFQAKIMPF 115 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~-----------~~~~~~~~~~------------~~v~~l~~~~~ 115 (538)
.|.+.|++|+|+|+|++||+|+.||.|+||++.+++ ....+ .+|. ..|++++|+|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~- 103 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLP- 103 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECC-
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcC-
Confidence 367899999999999999999999999999998876 34444 7898 8899999999
Q ss_pred CCC--ceEEEEeCCCcEEEeecccCceee--------------------------------------eeeccccCCCcEE
Q 009266 116 TDD--RSIVTCAADGQVRHAQILERGGVE--------------------------------------TKLLGKHQGRAHK 155 (538)
Q Consensus 116 ~~~--~~l~s~~~dg~v~vwd~~~~~~~~--------------------------------------~~~~~~~~~~v~~ 155 (538)
++ .+|++++.|++|++|++.++.... ...+.+|...|++
T Consensus 104 -~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 104 -QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp -CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred -CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 77 799999999999999997644310 0124679999999
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
++|+|++ .+|++| .|+.|++|++++ ++....+.... ....+ +...|.+++|+|+++.+|++|+.||.|++||++
T Consensus 183 ~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 183 ISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKP-ANMEE--LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCC-SSGGG--CCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeeccc-ccccc--cCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 9999998 688888 799999999984 33433332111 11112 455899999999844899999999999999999
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCc------------cceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCC
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQ------------VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~ 302 (538)
+++.... .......|. ..|.+++|+|+|++|++++.+.|++|++.+.
T Consensus 258 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~---------- 316 (447)
T 3dw8_B 258 ASALCDR-----------HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNME---------- 316 (447)
T ss_dssp TCSSSCT-----------TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCC----------
T ss_pred CCccccc-----------eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCC----------
Confidence 8763110 011222223 3899999999999999998899999999762
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceeeccccce-------------eeeEEEEecCCCcEEEEeccCCeEEE
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV-------------TVKGVNFFGPKCEYVVSGSDCGRIFI 369 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~i~~v~~~s~~~~~l~~gs~dg~i~i 369 (538)
...+..+.+|.... .+..++| +|++++|++|+.||.|+|
T Consensus 317 ---------------------------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-s~~~~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 317 ---------------------------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCW-NGSDSVVMTGSYNNFFRM 368 (447)
T ss_dssp ---------------------------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE-CTTSSEEEEECSTTEEEE
T ss_pred ---------------------------ccccceeeccccccccccccccccccccceEEEE-CCCCCEEEEeccCCEEEE
Confidence 22344455554211 1334888 999999999999999999
Q ss_pred eeccCcceeEEeec---------------------------------CcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 370 WKKKGGELIRVIEA---------------------------------DRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 370 wd~~~~~~~~~~~~---------------------------------h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
|++.+++.+. +.+ +...|..++|+|++++||+++.++ +++|..
T Consensus 369 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 369 FDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred EEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 9999887653 222 234688999999999999998765 777754
No 67
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-38 Score=312.73 Aligned_cols=324 Identities=15% Similarity=0.208 Sum_probs=258.4
Q ss_pred eeeEEcCCcCcE-EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 53 IYAKLDKHRGCV-NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 53 ~~~~~~~h~~~v-~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
....+.+|...| +++.| ++++|++|+.||+|++|++.+++.+..+ .+|...|++++|+| ++ +|++|+.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~--~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAH--GG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECS--TT-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcC--CC-EEEEEeCCCCEE
Confidence 456789999875 66666 4689999999999999999999988877 79999999999998 76 999999999999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcC--CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecc---------------c
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP---------------I 194 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~ 194 (538)
+|++.+++.+.. +.+|...|.+++|++ ++ .+|++++.|+.|++|+++++.......... .
T Consensus 187 vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 187 VWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEETTTTEEEEE--ECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEECCCCcEEEE--ECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 999998877655 788999999999984 55 789999999999999999876543211100 0
Q ss_pred CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC
Q 009266 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (538)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (538)
....+ +...+.++ +++ +.+|++++.+|.|++||+++++.. .....|...|.+++|+|+++
T Consensus 264 ~~~~~--~~~~v~~~--~~~-~~~l~~~~~d~~i~vwd~~~~~~~---------------~~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 264 GVLRG--HMASVRTV--SGH-GNIVVSGSYDNTLIVWDVAQMKCL---------------YILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp EEECC--CSSCEEEE--EEE-TTEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEEETTTT
T ss_pred EEccC--ccceEEEE--cCC-CCEEEEEeCCCeEEEEECCCCcEE---------------EEecCCCCCEEEEEEcCCCC
Confidence 00111 33356665 454 679999999999999999887532 22345678999999999999
Q ss_pred EEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC
Q 009266 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (538)
Q Consensus 275 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~ 353 (538)
+|++++ ++.|++|++.+ ...+..+.+|... |.+++| +
T Consensus 324 ~l~sg~~dg~i~vwd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-~- 361 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLEN--------------------------------------GELMYTLQGHTAL--VGLLRL-S- 361 (464)
T ss_dssp EEEEEETTSCEEEEETTT--------------------------------------TEEEEEECCCSSC--EEEEEE-C-
T ss_pred EEEEEeCCCcEEEEECCC--------------------------------------CcEEEEEeCCCCc--EEEEEE-c-
Confidence 999988 56999999987 4456778888876 888888 5
Q ss_pred CCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccc--cCccceeeee
Q 009266 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT--LPTNIEQVLI 431 (538)
Q Consensus 354 ~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~--~~~~~~~~~~ 431 (538)
+++|++|+.||.|++|++.+++....+. |...+..++|+|++++|++++ +|.|++|++.+++... +..|...+..
T Consensus 362 -~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~ 438 (464)
T 3v7d_B 362 -DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWS 438 (464)
T ss_dssp -SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEE
T ss_pred -CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEE
Confidence 6899999999999999999887766654 667788999999999999998 8999999999987753 5778888888
Q ss_pred cccCc--eeeeccCCCCCcee
Q 009266 432 PDHIR--WFALGDDDDGDYYF 450 (538)
Q Consensus 432 ~~~~~--~l~s~~~d~~~~~~ 450 (538)
++..+ .+++++.++..+.+
T Consensus 439 v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 439 VNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEETTEEEEEEEETTEEEEE
T ss_pred EEecCCEEEEEEEeCCeEEEE
Confidence 87333 55566666655444
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.3e-39 Score=336.74 Aligned_cols=298 Identities=16% Similarity=0.279 Sum_probs=256.4
Q ss_pred EeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCc
Q 009266 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (538)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~ 129 (538)
++.+.+.+.+|.+.|++++|+|++++||+|+.+|.|+||++.+++.+..+ .+|..+|++++|+| ++++|++++.+|.
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFR 78 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSE
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeC--CCCEEEEEeCCCe
Confidence 34567889999999999999999999999999999999999999988877 78999999999999 9999999999999
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC-CeeeeeeecccCCCCCcceeeeeEE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
|++|++.+++.+.. +.+|...|++++|+|++ .+|++++.+|.|++|++.++ .....+.. +...|.+
T Consensus 79 i~vw~~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~v~~ 145 (814)
T 3mkq_A 79 IRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMC 145 (814)
T ss_dssp EEEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEEC----------CSSCEEE
T ss_pred EEEEECCCCcEEEE--EecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcC----------CCCcEEE
Confidence 99999998887765 77899999999999999 68999999999999999987 44444443 3347999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC--CCCEEEEEc-CCeEE
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIY 285 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~-~~~i~ 285 (538)
++|+|.++.+|++++.+|.|++|++..++. ......++...+.+++|+| ++.+|++++ ++.|+
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCSSC--------------SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcc--------------eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 999994378999999999999999987642 1223334457899999999 899999988 56999
Q ss_pred EeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCC
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg 365 (538)
+|++.+ ......+.+|... |.+++| +|++++|++++.||
T Consensus 212 ~~d~~~--------------------------------------~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 212 IWDYQT--------------------------------------KSCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDG 250 (814)
T ss_dssp EEETTT--------------------------------------TEEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTS
T ss_pred EEECCC--------------------------------------CcEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCC
Confidence 999876 3456677778776 899999 99999999999999
Q ss_pred eEEEeeccCcceeEEeecCcceeeEEeecCCCCe-EEEeecCCceEEecCCCCc
Q 009266 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV-LASSGIESDIKILTPNAAD 418 (538)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~v~vw~~~~~~ 418 (538)
.|++|++.+++.+..+..|...|.+++|+|+++. +++++.++.+.+|++....
T Consensus 251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 9999999999999999999999999999999873 3555667889999876543
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.9e-40 Score=311.34 Aligned_cols=289 Identities=10% Similarity=0.076 Sum_probs=219.0
Q ss_pred cCcEEEEEEcCCCCEEEEecCC-------CeEEEEECCCCcee--------e-eeccCCCCCeEEEEEeecCCCceEEEE
Q 009266 61 RGCVNTVSFNTDGDILISGSDD-------RRVILWDWKTERVK--------L-SFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d-------~~i~iw~~~~~~~~--------~-~~~~~~~~~v~~l~~~~~~~~~~l~s~ 124 (538)
.-+|+|++|+|+|++||+||.+ +.|+||++..+... . ..+.+|...|.++++. +..++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~~g 89 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIILVG 89 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEEEE
Confidence 4589999999999999998753 35999998765421 1 1236788888888765 4566655
Q ss_pred -----------eCCCcEEEeecccCceeee-------eeccccCCCcEEEEEcCCCCcEEE--EEcCCCcEEEEecCCCC
Q 009266 125 -----------AADGQVRHAQILERGGVET-------KLLGKHQGRAHKLAIEPGSPHVFY--TCGEDGLVQHFDLRTGA 184 (538)
Q Consensus 125 -----------~~dg~v~vwd~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~ 184 (538)
+.++.+++|++........ .....+...+++++|+|+|. +|+ +++.|++|+|||+++++
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTE
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCc
Confidence 4578899999876543211 11223445689999999994 544 45578999999999998
Q ss_pred eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccce
Q 009266 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (538)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (538)
.+..+. +...|.+++|+|+ +++|++++.+ .+++|+..+++.. .......|...|
T Consensus 169 ~~~~~~-----------~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~-------------~~~~~~~~~~~v 222 (365)
T 4h5i_A 169 EKFEIE-----------TRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCI-------------ARKTDFDKNWSL 222 (365)
T ss_dssp EEEEEE-----------CSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEE-------------EEECCCCTTEEE
T ss_pred EEEEeC-----------CCCceEEEEEccC-CceEEeccce-eEEEEEeccCcce-------------eeeecCCCCCCE
Confidence 887765 3347999999998 7899988855 5666666655421 112334467789
Q ss_pred EEEEEcCCCCEEEEEc-CC----eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecc
Q 009266 265 TGLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (538)
Q Consensus 265 ~~~~~s~~~~~l~~~~-~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
.+++|+|+++++++++ ++ .+++|++..... .......+.+|
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~----------------------------------~~~~~~~~~~~ 268 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT----------------------------------SVLRSKQVTNR 268 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE----------------------------------EEEEEEEEESS
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeeccccccee----------------------------------cceeeeeecCC
Confidence 9999999999999887 33 477888765210 01123456677
Q ss_pred ccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEe-ecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 340 ~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
... |++++| +|+|++||+|+.|++|+|||+.+++++..+ .+|...|++|+|+|++++|||||.|++||||++...
T Consensus 269 ~~~--V~~~~~-Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 269 FKG--ITSMDV-DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CSC--EEEEEE-CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCC--eEeEEE-CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 766 999999 999999999999999999999999999875 789999999999999999999999999999998643
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.1e-39 Score=313.39 Aligned_cols=329 Identities=12% Similarity=0.086 Sum_probs=248.6
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 142 (538)
.+++++|+|++++|++++.++.|++|++.+++....+ ..| ..+...+|+| ++.+|++++.+|.|++|++.++....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECS--SSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEec--CCCEEEEEECCCCEEEEeCCCcceee
Confidence 3558999999999999999999999999987765554 444 4455557888 99999999999999999998776654
Q ss_pred eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE
Q 009266 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
. +.+|...|++++|+|++ .+|++++.|+.|++|++.+++.+..+.. +...|.+++|+|+ +.+|+++
T Consensus 134 ~--~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~s~ 199 (420)
T 3vl1_A 134 I--DQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIG----------HRATVTDIAIIDR-GRNVLSA 199 (420)
T ss_dssp E--TTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEEC----------CSSCEEEEEEETT-TTEEEEE
T ss_pred e--cccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcC----------CCCcEEEEEEcCC-CCEEEEE
Confidence 4 78999999999999998 6899999999999999999988877764 3347999999997 7899999
Q ss_pred eCCCeEEEEEcCCccccCCCCCCCC----Cccc-----CCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 223 GSDEYTRLYDIRKYKWDGSTDFGQP----ADYF-----CPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 223 ~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
+.||.|++|++++++.......... +... ........+...+.+++|+|++++|++++ ++.|++|++.++
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999998765433221000 0000 00001111245666777899999999888 668999999864
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCcee-eccccceeeeEEEEecCCCc-EEEEeccCCeEEEe
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIW 370 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~s~~~~-~l~~gs~dg~i~iw 370 (538)
. ....+ ..|... |.+++| +|+++ +|++|+.||.|++|
T Consensus 280 ~--------------------------------------~~~~~~~~~~~~--v~~~~~-~~~~~~~l~~g~~dg~i~vw 318 (420)
T 3vl1_A 280 E--------------------------------------QTIQLPSKFTCS--CNSLTV-DGNNANYIYAGYENGMLAQW 318 (420)
T ss_dssp C--------------------------------------EEEEECCTTSSC--EEEEEE-CSSCTTEEEEEETTSEEEEE
T ss_pred c--------------------------------------eeEEcccccCCC--ceeEEE-eCCCCCEEEEEeCCCeEEEE
Confidence 2 22222 345554 999999 99999 99999999999999
Q ss_pred eccCcce-eEEeec-CcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc----------cccCccceeeeecc--cCc
Q 009266 371 KKKGGEL-IRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR----------ATLPTNIEQVLIPD--HIR 436 (538)
Q Consensus 371 d~~~~~~-~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~----------~~~~~~~~~~~~~~--~~~ 436 (538)
++.+++. +..+.. |...|+++.| +++++|++++.|+.|++|++..... ..+..+...+..+. +++
T Consensus 319 d~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 397 (420)
T 3vl1_A 319 DLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDD 397 (420)
T ss_dssp ETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCS
T ss_pred EcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCC
Confidence 9998754 777777 5667888755 5788999999999999999876322 22334444444443 332
Q ss_pred ----eeeeccCCCCCceee
Q 009266 437 ----WFALGDDDDGDYYFY 451 (538)
Q Consensus 437 ----~l~s~~~d~~~~~~~ 451 (538)
.|++++.++....|.
T Consensus 398 ~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 398 ESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp SSSCEEEEEETTTEEEEEE
T ss_pred CCcceEEEEcCCceEEEEe
Confidence 477777777555543
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-38 Score=299.30 Aligned_cols=290 Identities=10% Similarity=0.098 Sum_probs=238.0
Q ss_pred eEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeccCCCCCeEEEEEeecCCCc-eEEEEeCCCcE
Q 009266 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQV 130 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~-~l~s~~~dg~v 130 (538)
....+|.+.|++++|+|++++|++++.++.|+||++.++. ....+ .+|...|++++|+| ++. +|++++.+|.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFID--NTDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEE--SSSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECC--CCCcEEEEEcCCCeE
Confidence 3456899999999999999999999999999999998877 23333 58999999999999 999 99999999999
Q ss_pred EEeec-ccCceeeeeeccc--cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC---------CCeeeeeeecccCCCC
Q 009266 131 RHAQI-LERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---------GAATELFTCRPIDDRR 198 (538)
Q Consensus 131 ~vwd~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~ 198 (538)
++|++ .++.. ..+.+ |...|.+++|+| + .+|++++.++.|++|++++ ++.+..+.
T Consensus 82 ~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------- 148 (342)
T 1yfq_A 82 LKVDLIGSPSF---QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------- 148 (342)
T ss_dssp EEECSSSSSSE---EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--------
T ss_pred EEEEeccCCce---EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--------
Confidence 99999 77654 33677 999999999999 6 7899999999999999987 55444433
Q ss_pred CcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEE
Q 009266 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELL 276 (538)
Q Consensus 199 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 276 (538)
+...|.+++|+|+ + |++++.++.|++|++++ +... .......+...+.+++|+| ++++|
T Consensus 149 ---~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~-------------~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 149 ---VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDN-------------GTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp ---SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCC-------------CEEEECSCSSCEEEEEECSGGGCEE
T ss_pred ---eCCceEEEEecCC-c--EEEEeCCCeEEEEECCcccccc-------------ceeeecCCCCceeEEEECCCCCCEE
Confidence 3347999999986 3 99999999999999987 4311 1122334567899999999 99999
Q ss_pred EEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccc-------ceeeeEE
Q 009266 277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGV 348 (538)
Q Consensus 277 ~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~v 348 (538)
++++ ++.|++|++....... .......+..|.. ...|.++
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDY--------------------------------NSSKRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp EEEETTSEEEEEECCTTCCST--------------------------------TCTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred EEEecCCcEEEEEEcCCCccc--------------------------------ccccceeeecccccccccccceeEEEE
Confidence 9888 6699999987631000 0133455666643 1139999
Q ss_pred EEecCCCcEEEEeccCCeEEEeeccCcceeEEeecC-cceeeEEeecCCCCeEEEeecCCc-eEEecC
Q 009266 349 NFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESD-IKILTP 414 (538)
Q Consensus 349 ~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~-v~vw~~ 414 (538)
+| +|++++|++|+.+|.|++|++.+++++..+.+| ...|++++ |++++|++++.||. .+.|..
T Consensus 258 ~~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 258 EF-SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EE-cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 99 999999999999999999999999999999998 99999999 99999999999998 666653
No 72
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.6e-38 Score=301.71 Aligned_cols=284 Identities=14% Similarity=0.252 Sum_probs=233.2
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 141 (538)
.++.|+||++ ++||+|. |++|+||++.+|+++..+ +.+|...|++|+|+| +|.+|++|+.||+|+||++.+++.+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEEEECCCeEEEEEcCCCcEE
Confidence 4688999985 4787775 899999999999876654 256888999999999 9999999999999999999998877
Q ss_pred eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee-eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
.. +.+|...+.++++++ .+|++|+.++.+++|+....... ..+.. +...+..+.|+|. +.+++
T Consensus 183 ~~--~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~----------h~~~~~~~~~~~~-g~~l~ 246 (420)
T 4gga_A 183 RN--MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSG----------HSQEVCGLRWAPD-GRHLA 246 (420)
T ss_dssp EE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSCEEEEEECTT-SSEEE
T ss_pred EE--EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecc----------cccceeeeeecCC-CCeee
Confidence 65 789999999988864 68999999999999998875443 33433 3347899999997 79999
Q ss_pred EEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEc---CCeEEEeeccCCCCCC
Q 009266 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN---DEFIYLFTQDMGLGPN 296 (538)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~---~~~i~~~d~~~~~~~~ 296 (538)
+++.|+.|++|++..++... ........|...|.+++|+|.+. ++++++ ++.|++|++.++
T Consensus 247 s~~~D~~v~i~~~~~~~~~~-----------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---- 311 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGGW-----------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---- 311 (420)
T ss_dssp EEETTSCEEEEESSCCSSCS-----------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT----
T ss_pred eeeccccceEEeeccccccc-----------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc----
Confidence 99999999999998765311 12233445678999999999764 555443 568999999873
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec--cCCeEEEeeccC
Q 009266 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKKG 374 (538)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs--~dg~i~iwd~~~ 374 (538)
.....+..+.. +.++.| +|+++.|++++ .|+.|+||++.+
T Consensus 312 ----------------------------------~~~~~~~~~~~---v~~~~~-~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 312 ----------------------------------ACLSAVDAHSQ---VCSILW-SPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp ----------------------------------EEEEEEECSSC---EEEEEE-ETTTTEEEEEECTTTCCEEEEETTT
T ss_pred ----------------------------------ccceeeccccc---eeeeee-cCCCCeEEEEEecCCCEEEEEECCC
Confidence 34445555443 788888 89999887654 789999999999
Q ss_pred cceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
++++.++.+|.+.|++|+|+|++++||||+.|++|+||++....+
T Consensus 354 ~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 354 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 999999999999999999999999999999999999999876543
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-39 Score=314.15 Aligned_cols=302 Identities=15% Similarity=0.148 Sum_probs=215.3
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC-CCCEEEEecC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSD 81 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~t~~~ 81 (538)
.+|.|.++.+||+|+.||+|+|||+.+++.. ....+.+|.+.|++|+|+| ++.+|+||+.
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~ 185 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSM 185 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------EEECCCSSSCCCCEEEECSSCTTEEEEECS
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeC
Confidence 4566667889999999999999999877643 1345678999999999998 6899999999
Q ss_pred CCeEEEEECCCCceeeeecc--CCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 82 DRRVILWDWKTERVKLSFHS--GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
||+|+|||+.++.. ..+.. .+...+.+++|+| ++.+|++|+.+|.|++|++... .+. .+.+|...|++++|+
T Consensus 186 D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~i~~wd~~~~-~~~--~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 186 EGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDGK-ELW--NLRMHKKKVTHVALN 259 (435)
T ss_dssp SSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEET--TTTEEEEECSSSBEEEEESSSC-BCC--CSBCCSSCEEEEEEC
T ss_pred CCEEEEeeccCCce-eEEeccCCCCccEEEEEECC--CCCEEEEEeCCCcEeeeccCcc-eeE--EEecccceEEeeeec
Confidence 99999999986554 33323 3345678999999 9999999999999999998643 333 378899999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcccc
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (538)
|+++.+|++++.|+.|+|||+++.+....+.... + |...|++++|+|+ +.+|++++.||.|+||+++++...
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~-----~--h~~~v~~~~~spd-g~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL-----P--HRHPVNAACFSPD-GARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC-----B--CSSCEEECCBCTT-SSEEEEEESSSCEEEEESSSSSSE
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEee-----e--ccccccceeECCC-CCeeEEEcCCCEEEEEECCCCccc
Confidence 9997899999999999999999877654443211 1 4558999999997 799999999999999999987532
Q ss_pred CCCCCCCC--CcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C-CeEEEeeccCCCCCCCCCCCCccccccccccCCC
Q 009266 240 GSTDFGQP--ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (538)
Q Consensus 240 ~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (538)
........ ................+..+++++++.++++.+ + +.|++|++.++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g----------------------- 388 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG----------------------- 388 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC-----------------------
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC-----------------------
Confidence 21110000 000000000011122333444444444433333 2 36999998774
Q ss_pred CccccCCCCCCCCcccCCcee-eccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCccee
Q 009266 316 HTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~ 378 (538)
..+..+ .+|... |.++..|+|+|++||+|+ |+.|+||++++++..
T Consensus 389 ---------------~~~~~l~~~~~~~--v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 389 ---------------KMMCQLYDPESSG--ISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ---------------CEEEEECCSSCCC--CCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred ---------------cEEEEEeCCCCCc--EEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 233333 345554 777743399999999987 889999999988753
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.7e-38 Score=304.84 Aligned_cols=308 Identities=17% Similarity=0.271 Sum_probs=257.1
Q ss_pred eeeeEEcCCcCcE-EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcE
Q 009266 52 GIYAKLDKHRGCV-NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 52 ~~~~~~~~h~~~v-~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
+..+.+.+|.+.| +++. ++|++|++|+.||+|++|++.+++.+..+ .+|...|.+++|++ .+|++++.||+|
T Consensus 109 ~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~~~dg~i 181 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD----NIIISGSTDRTL 181 (445)
T ss_dssp CCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET----TEEEEEETTSCE
T ss_pred ceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC----CEEEEEeCCCeE
Confidence 4557789999875 5554 46899999999999999999999988777 79999999999974 699999999999
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
++|++.+++.+.. +.+|...|.+++|++ .+|++++.||.|++|++.+++.+..+..+ ...|.+++
T Consensus 182 ~vwd~~~~~~~~~--~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~~~ 246 (445)
T 2ovr_B 182 KVWNAETGECIHT--LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGH----------VAAVRCVQ 246 (445)
T ss_dssp EEEETTTTEEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECC----------SSCEEEEE
T ss_pred EEEECCcCcEEEE--ECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCC----------cccEEEEE
Confidence 9999998877655 789999999999964 56999999999999999999888777643 34789999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeec
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (538)
|. +.+|++++.+|.|++|++++++.. .....|...|.+++| ++.+|++++ ++.|++|++
T Consensus 247 ~~---~~~l~~~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~ 306 (445)
T 2ovr_B 247 YD---GRRVVSGAYDFMVKVWDPETETCL---------------HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV 306 (445)
T ss_dssp EC---SSCEEEEETTSCEEEEEGGGTEEE---------------EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEET
T ss_pred EC---CCEEEEEcCCCEEEEEECCCCcEe---------------EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEEC
Confidence 93 578999999999999999887532 223356778999999 778888887 679999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEE
Q 009266 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (538)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~i 369 (538)
.+ ...+..+.+|... +.++.+ ++++|++|+.||.|++
T Consensus 307 ~~--------------------------------------~~~~~~~~~~~~~--v~~~~~---~~~~l~~~~~dg~i~v 343 (445)
T 2ovr_B 307 ET--------------------------------------GNCIHTLTGHQSL--TSGMEL---KDNILVSGNADSTVKI 343 (445)
T ss_dssp TT--------------------------------------CCEEEEECCCCSC--EEEEEE---ETTEEEEEETTSCEEE
T ss_pred CC--------------------------------------CCEEEEEcCCccc--EEEEEE---eCCEEEEEeCCCeEEE
Confidence 87 3445667777765 666655 5779999999999999
Q ss_pred eeccCcceeEEeec---CcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccc-c-----Cccceeeeecc--cCc-e
Q 009266 370 WKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT-L-----PTNIEQVLIPD--HIR-W 437 (538)
Q Consensus 370 wd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~-~-----~~~~~~~~~~~--~~~-~ 437 (538)
|++.+++++..+.. |...|++++|+ +++|++++.||.|++|++.+++... + ..+...+..+. +++ .
T Consensus 344 wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 421 (445)
T ss_dssp EETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred EECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEE
Confidence 99999999999986 78899999996 5899999999999999999887533 2 35677777766 666 8
Q ss_pred eeeccCCCC
Q 009266 438 FALGDDDDG 446 (538)
Q Consensus 438 l~s~~~d~~ 446 (538)
|++++.++.
T Consensus 422 la~~~~dg~ 430 (445)
T 2ovr_B 422 CAVGSRNGT 430 (445)
T ss_dssp EEEECSSSS
T ss_pred EEEcccCCC
Confidence 899999986
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=302.08 Aligned_cols=297 Identities=13% Similarity=0.135 Sum_probs=239.1
Q ss_pred eeeeeEEcCCcCcEEEEEEcCC---CCEEEEecCCCeEEEEECCC-CceeeeeccCCCCCeEEEEEeecCCCceEEEEeC
Q 009266 51 LGIYAKLDKHRGCVNTVSFNTD---GDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (538)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~---g~~l~t~~~d~~i~iw~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~ 126 (538)
++.++.+.+|.+.|++|+|+|+ |++|++|+.||.|+||++.+ +..+...+.+|...|++++|+| ++.+|++++.
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~ 106 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD--DGSKVFTASC 106 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT--TSSEEEEEET
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc--CCCEEEEEcC
Confidence 3456778999999999999998 69999999999999999998 6665455588999999999999 9999999999
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEEEE--cCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
+|.|++|++.++..+. +..|...|++++| +|++ .+|++++.|+.|++||+++++.+..+..+.
T Consensus 107 dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------- 171 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE----------- 171 (368)
T ss_dssp TSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSS-----------
T ss_pred CCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCC-----------
Confidence 9999999999877554 4569999999999 8888 789999999999999999998888776432
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCE----EEEEc
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL----LVSYN 280 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~ 280 (538)
.+.++.+.+ ..+++++.++.+++|+++...... ......+...+.++++.+.... +++++
T Consensus 172 ~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 172 RCYCADVIY---PMAVVATAERGLIVYQLENQPSEF-------------RRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE-------------EECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred CceEEEecC---CeeEEEeCCCcEEEEEeccccchh-------------hhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 466777765 478888899999999998753210 1111122345566666655443 66666
Q ss_pred -CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccce----------eeeEEE
Q 009266 281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV----------TVKGVN 349 (538)
Q Consensus 281 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~v~ 349 (538)
++.|++|++..... ......+.+|.... .|.+++
T Consensus 236 ~dg~i~i~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 280 (368)
T 3mmy_A 236 IEGRVAIHYINPPNP-----------------------------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIA 280 (368)
T ss_dssp TTSEEEEEESSCSCH-----------------------------------HHHSEEEECSEEC----CCCEEECCEEEEE
T ss_pred CCCcEEEEecCCCCc-----------------------------------cccceeeeeeecccccccccccccceEEEE
Confidence 67999999976311 13344555555310 389999
Q ss_pred EecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 350 FFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 350 ~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
| +|++++|++|+.||.|+||++.+++++..+.+|...|++++|+|++++||+++.|+..+.|++-.
T Consensus 281 ~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 281 F-HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp E-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred E-ecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 9 99999999999999999999999999999999999999999999999999999998777666543
No 76
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.6e-38 Score=303.94 Aligned_cols=293 Identities=16% Similarity=0.228 Sum_probs=229.9
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
+++||+|. |++|+|||+.+|++++ ...+.+|...|++|+|+|+|++||+|+.||+|+||+
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~-------------------~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd 175 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQ-------------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD 175 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEE-------------------EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEE-------------------EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEE
Confidence 35777775 8999999999998752 234567889999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (538)
+.+++.+..+ .+|...+.+++++ +.+|++|+.++.+++|+........ ..+.+|...+..+.++|.+ .+++++
T Consensus 176 ~~~~~~~~~~-~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~-~~~~~h~~~~~~~~~~~~g-~~l~s~ 248 (420)
T 4gga_A 176 VQQQKRLRNM-TSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG-RHLASG 248 (420)
T ss_dssp TTTTEEEEEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred cCCCcEEEEE-eCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceee-EEecccccceeeeeecCCC-Ceeeee
Confidence 9999998887 7999999988775 5899999999999999988655433 3478899999999999999 789999
Q ss_pred cCCCcEEEEecCCCCeeeee-eecccCCCCCcceeeeeEEEEEcCCCCcEEEEE--eCCCeEEEEEcCCccccCCCCCCC
Q 009266 170 GEDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA--GSDEYTRLYDIRKYKWDGSTDFGQ 246 (538)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~ 246 (538)
+.|+.|++|++.+++..... .... .+...|.+++|+|.+..+++++ +.|++|++||+.+++....
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~-------~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~----- 316 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFT-------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA----- 316 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEEC-------CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE-----
T ss_pred eccccceEEeeccccccceeeeeec-------ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee-----
Confidence 99999999999887643221 1111 1445799999999877887765 4799999999998764221
Q ss_pred CCcccCCCCccCCCccceEEEEEcCCCCEEEEEc---CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (538)
. .+...+.++.|+|+++.|++++ ++.|+||++.+
T Consensus 317 ----------~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-------------------------------- 353 (420)
T 4gga_A 317 ----------V-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-------------------------------- 353 (420)
T ss_dssp ----------E-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--------------------------------
T ss_pred ----------e-ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC--------------------------------
Confidence 1 1245789999999999887764 56899999987
Q ss_pred CCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEee
Q 009266 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (538)
...+..+.+|... |++++| +|+|++||+|+.|++|+||++....+.+....+...+....|
T Consensus 354 ------~~~v~~l~gH~~~--V~~l~~-spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 354 ------MAKVAELKGHTSR--VLSLTM-SPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp ------CCEEEEECCCSSC--EEEEEE-CTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred ------CcEEEEEcCCCCC--EEEEEE-cCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 4567788999887 999999 999999999999999999999887777666655544444333
No 77
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.3e-39 Score=299.48 Aligned_cols=274 Identities=17% Similarity=0.203 Sum_probs=203.0
Q ss_pred eEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
..+.+|.+.|++++|+|+|++||+|+.|++|+||++.++.. +..+ .+|...|++++|+|..++.+|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 45679999999999999999999999999999999987753 3344 79999999999986223899999999999999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEcCCC-CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
|++.++.......+.+|...|++++|+|+. ..+|++++.|++|++|+++++......... .+ +...|.+++|
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~-----~~--h~~~v~~~~~ 158 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-----NA--HTIGCNAVSW 158 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT-----TS--SSSCBCCCEE
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee-----cc--ccCCcceEEE
Confidence 999887544444578899999999999982 268999999999999999876432111111 11 3447899999
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeecc
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (538)
+|+. . . +.+ .+...+ ...+.+++|++++ ++.|++|++.
T Consensus 159 ~~~~-~---~----~~~--~~~~~~-------------------------------~~~~~~~~l~sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 159 APAV-V---P----GSL--IDHPSG-------------------------------QKPNYIKRFASGGCDNLIKLWKEE 197 (316)
T ss_dssp CCCC-C---C------------CCS-------------------------------CCCCCCCBEECCBTTSBCCEEEEC
T ss_pred cccc-C---C----ccc--cccccc-------------------------------cCccccceEEEecCCCeEEEEEeC
Confidence 9962 1 0 000 000000 0112356777777 5688889875
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC----cEEEEeccCCe
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGR 366 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~----~~l~~gs~dg~ 366 (538)
.... ......+.+|... |.+++| +|++ ++||+|+.|++
T Consensus 198 ~~~~-----------------------------------~~~~~~l~~h~~~--V~~v~~-sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 198 EDGQ-----------------------------------WKEEQKLEAHSDW--VRDVAW-APSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp TTSC-----------------------------------EEEEECCBCCSSC--EEEEEC-CCCSSCSCCEEEEEETTCE
T ss_pred CCCc-----------------------------------cceeeecccCCCc--eEEEEe-cCCCCCCCceEEEEcCCCe
Confidence 4210 1234567788876 999999 9986 89999999999
Q ss_pred EEEeeccCcc----eeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 367 IFIWKKKGGE----LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 367 i~iwd~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
|+||++.+.. ....+..|...|++++|+|++++||+++.|++|+||++.
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999987631 234567788999999999999999999999999999975
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-38 Score=302.60 Aligned_cols=316 Identities=15% Similarity=0.150 Sum_probs=237.2
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+.++|++++|++++.++.|+||++.+++. .....+.+|...|++++|+|++++|++++.++
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 74 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 74 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEE-------------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcE-------------------EeeeeecCCCCcccEEEEeCCCCEEEEEcCCC
Confidence 34668999999999999999999997752 12467889999999999999999999999999
Q ss_pred eEEEEECCCCceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce--eeeeeccccCCCcEEEEEcC
Q 009266 84 RVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~ 160 (538)
.|++|++.+++....+ ...|...|.+++|+| ++.+|++++.++.|++|++..... ........|...|.+++|+|
T Consensus 75 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 75 NAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp CEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred eEEEEECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 9999999888754433 267899999999999 999999999999999999987763 22233467899999999999
Q ss_pred CCCcEEEEEcCCCcEEEEecC------------------CCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE
Q 009266 161 GSPHVFYTCGEDGLVQHFDLR------------------TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
++ .+|++++.++.|++|+++ .++.+..+.. +...|.+++|+|+ +.+|+++
T Consensus 153 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~ 220 (372)
T 1k8k_C 153 NS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS----------SCGWVHGVCFSAN-GSRVAWV 220 (372)
T ss_dssp TS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC----------CSSCEEEEEECSS-SSEEEEE
T ss_pred CC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC----------CCCeEEEEEECCC-CCEEEEE
Confidence 98 789999999999999964 3444444432 3447999999997 7899999
Q ss_pred eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccC--CC--CCCCC
Q 009266 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM--GL--GPNPP 298 (538)
Q Consensus 223 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~--~~--~~~~~ 298 (538)
+.+|.|++|++++++.. .....|...|.+++|+|++++|+++.++.|++|++.. +. ....+
T Consensus 221 ~~d~~i~i~d~~~~~~~---------------~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAV---------------ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp ETTTEEEEEEGGGTTEE---------------EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCC
T ss_pred eCCCEEEEEECCCCcee---------------EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeecc
Confidence 99999999999987532 2223456789999999999999999888999999987 31 11111
Q ss_pred CCCCccccccccccCCCCccccCCCCCCCCcccC-------CceeeccccceeeeEEEEecCCC---cEEEEeccCCeEE
Q 009266 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA-------PQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSDCGRIF 368 (538)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~v~~~s~~~---~~l~~gs~dg~i~ 368 (538)
........... ..+....... ..... .....+|... |++++|++++| ++|++|+.||.|+
T Consensus 286 ~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~g~~~~~l~s~~~Dg~i~ 355 (372)
T 1k8k_C 286 DVPKQSSQRGL-------TARERFQNLD-KKASSEGSAAAGAGLDSLHKNS--VSQISVLSGGKAKCSQFCTTGMDGGMS 355 (372)
T ss_dssp CCC---------------CHHHHHHHCC-CCC---------CCCSSSSSSC--EEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred Cccccchhhhc-------chhhhhhhcc-cccccccCccccccccccccCC--cceeEEecCCCcceeeEEEecCCCceE
Confidence 10000000000 0000000000 00011 1222477776 99999757888 9999999999999
Q ss_pred EeeccCcce
Q 009266 369 IWKKKGGEL 377 (538)
Q Consensus 369 iwd~~~~~~ 377 (538)
+|++.+++.
T Consensus 356 ~W~~~~~~~ 364 (372)
T 1k8k_C 356 IWDVRSLES 364 (372)
T ss_dssp EEEHHHHHH
T ss_pred EEEecChhH
Confidence 999987653
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-38 Score=302.11 Aligned_cols=287 Identities=16% Similarity=0.233 Sum_probs=233.0
Q ss_pred EcCCcCc--EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEee
Q 009266 57 LDKHRGC--VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (538)
Q Consensus 57 ~~~h~~~--v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd 134 (538)
..+|... +.+++|++ ..|++++.++.|+||++.+++....+...|...|++++|+| ++.+|++++.+|.|++|+
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH--DGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT--TSSEEEEEETTSCEEEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC--CCCEEEEECCCCeEEEEE
Confidence 3466655 45566664 55788889999999999999987777566899999999999 999999999999999999
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
+.+++.+.. +.+|...|.+++|++ .+|++++.+|.|++|+++. ......+.. +...|.+++|+|
T Consensus 163 ~~~~~~~~~--~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~ 227 (401)
T 4aez_A 163 VESQTKLRT--MAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQG----------HSSEVCGLAWRS 227 (401)
T ss_dssp TTTCCEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSCEEEEEECT
T ss_pred CcCCeEEEE--ecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcC----------CCCCeeEEEEcC
Confidence 998877665 778999999999954 6899999999999999994 444555543 344799999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC-CEEEEEc---CCeEEEeec
Q 009266 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN---DEFIYLFTQ 289 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~---~~~i~~~d~ 289 (538)
+ +.+|++++.||.|++||+++++. ......|...|.+++|+|++ .++++++ ++.|++|++
T Consensus 228 ~-~~~l~s~~~d~~v~iwd~~~~~~---------------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 228 D-GLQLASGGNDNVVQIWDARSSIP---------------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp T-SSEEEEEETTSCEEEEETTCSSE---------------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred C-CCEEEEEeCCCeEEEccCCCCCc---------------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 7 79999999999999999997642 22233467889999999976 4566654 679999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE--eccCCeE
Q 009266 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRI 367 (538)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~--gs~dg~i 367 (538)
.++ .....+.. .. .+.+++| +|++++|++ |+.+|.|
T Consensus 292 ~~~--------------------------------------~~~~~~~~-~~--~v~~~~~-s~~~~~l~~~~g~~dg~i 329 (401)
T 4aez_A 292 ATG--------------------------------------ARVNTVDA-GS--QVTSLIW-SPHSKEIMSTHGFPDNNL 329 (401)
T ss_dssp TTC--------------------------------------CEEEEEEC-SS--CEEEEEE-CSSSSEEEEEECTTTCEE
T ss_pred CCC--------------------------------------CEEEEEeC-CC--cEEEEEE-CCCCCeEEEEeecCCCcE
Confidence 863 23344432 23 3899999 999999998 5589999
Q ss_pred EEeeccCcceeE--EeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 368 FIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 368 ~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
+||++.+++... .+.+|...|.+++|+|++++|++++.||.|++|++.+++..
T Consensus 330 ~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 999999865554 46789999999999999999999999999999999887653
No 80
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=287.70 Aligned_cols=282 Identities=13% Similarity=0.219 Sum_probs=226.0
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 141 (538)
.+++|+||+++ +||+|. |++|+|||+.+++++..+ ..+|...|++++|+| ++++|++|+.||+|++|++.+++.+
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEEEEECCCcEEEeecCCceeE
Confidence 35789999986 777764 899999999999987665 257888999999999 9999999999999999999998877
Q ss_pred eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee-eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
.. +.+|...+.++.+.+ .+|++++.++.+++|+....... ..+.. +...+..+++++. +.+|+
T Consensus 103 ~~--~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~l~ 166 (318)
T 4ggc_A 103 RN--MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSG----------HSQEVCGLRWAPD-GRHLA 166 (318)
T ss_dssp EE--EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSCEEEEEECTT-SSEEE
T ss_pred EE--ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcC----------ccCceEEEEEcCC-CCEEE
Confidence 65 778988888776654 68999999999999998876543 33332 3447899999997 78999
Q ss_pred EEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE-E--EEc-CCeEEEeeccCCCCCC
Q 009266 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-V--SYN-DEFIYLFTQDMGLGPN 296 (538)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~--~~~-~~~i~~~d~~~~~~~~ 296 (538)
+++.||.|++||+++++.... .......+...|.+++++|.+..+ . +++ ++.|++|+....
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---- 231 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWV-----------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---- 231 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSC-----------CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC----
T ss_pred EEecCcceeEEECCCCccccc-----------ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc----
Confidence 999999999999998753211 122334456789999999976533 2 333 458999998753
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe--ccCCeEEEeeccC
Q 009266 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG--SDCGRIFIWKKKG 374 (538)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g--s~dg~i~iwd~~~ 374 (538)
.. .....+... +..+.| +|.++.++++ +.|+.|+||++.+
T Consensus 232 ----------------------------------~~-~~~~~~~~~--v~~~~~-~~~~~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 232 ----------------------------------AC-LSAVDAHSQ--VCSILW-SPHYKELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp ----------------------------------CE-EEEEECSSC--EEEEEE-ETTTTEEEEEECTTTCCEEEEETTT
T ss_pred ----------------------------------cc-cccccceee--eeeeee-cccccceEEEEEcCCCEEEEEECCC
Confidence 11 222233333 788888 8888877764 4799999999999
Q ss_pred cceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
++++.++.+|.+.|++++|+|++++||||+.||+|+||++...
T Consensus 274 ~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 274 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999999999999999999999998653
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-39 Score=306.21 Aligned_cols=329 Identities=11% Similarity=0.096 Sum_probs=219.2
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
...++|++++|++|+.++.|+||++.++.. ++...+.+|...|++++|+|++++|++++.|
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGNGW-------------------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETTEE-------------------EECCCBCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCCce-------------------EEEEEEecCCceEEEEEEeCCCCEEEEEeCC
Confidence 344677999999999999999999997731 1245688999999999999999999999999
Q ss_pred CeEEEEECCCCc---eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee-eeeeccc-cCCCcEEEE
Q 009266 83 RRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGK-HQGRAHKLA 157 (538)
Q Consensus 83 ~~i~iw~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~-~~~~v~~~~ 157 (538)
++|+||++.+++ ....+ .+|...|++++|+| ++.+|++++.++.|++|++.++... ....+.. |...|++++
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp SSEEEC------CCCCEEEC-CCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred CeEEEEEcCCCCceeeeeEe-cccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 999999999877 44444 68999999999999 9999999999999999999887631 1123555 999999999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEecCCCCeeeeee----------ecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCe
Q 009266 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT----------CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (538)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 227 (538)
|+|++ .+|++++.|+.|++|++.+........ ....... .+...|.+++|+|+ +.+|++++.||.
T Consensus 154 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~-~~~l~~~~~d~~ 228 (377)
T 3dwl_C 154 WHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPS-GNALAYAGHDSS 228 (377)
T ss_dssp ECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTT-SSCEEEEETTTE
T ss_pred EcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCC-CCEEEEEeCCCc
Confidence 99998 799999999999999996443111000 0000000 14557999999998 789999999999
Q ss_pred EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCC--CCCCCCccc
Q 009266 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN--PPPSSPVST 305 (538)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~ 305 (538)
|++|++++++... ........|...|.+++|+|++++|++++++.+.+|+........ .+.......
T Consensus 229 i~iwd~~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T 3dwl_C 229 VTIAYPSAPEQPP-----------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKT 297 (377)
T ss_dssp EC-CEECSTTSCE-----------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCC
T ss_pred EEEEECCCCCCcc-----------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccc
Confidence 9999999875200 002334456788999999999999999998887788876432111 111000000
Q ss_pred cc-------------cccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc---EEEEeccCCeEEE
Q 009266 306 RS-------------EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE---YVVSGSDCGRIFI 369 (538)
Q Consensus 306 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~---~l~~gs~dg~i~i 369 (538)
.. ....+......+......... .........|... |++++++.+.+. +|++|+.||.|+|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~H~~~--i~~~~~~~~~~~~~~~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 298 SFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSS-QSISSLPTVHQNM--IATLRPYAGTPGNITAFTSSGTDGRVVL 374 (377)
T ss_dssp CBSSSSSBCCCCCC--------------------------CCCSSSCSSC--EEEEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred ccccccccccccccccccccccccccccchhhcccc-ccccccCccccce--eEEEeccCCCCCceEEEEeecCCCcEEE
Confidence 00 000000000000000000000 0112223347776 889987555544 7999999999999
Q ss_pred eec
Q 009266 370 WKK 372 (538)
Q Consensus 370 wd~ 372 (538)
|++
T Consensus 375 Wdl 377 (377)
T 3dwl_C 375 WTL 377 (377)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 82
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-39 Score=316.70 Aligned_cols=324 Identities=10% Similarity=0.076 Sum_probs=229.7
Q ss_pred CcCcEEEEEEcCCC---------CEEEE-------------------ecCCCeEEEEECCCCceee---eeccCCCCCeE
Q 009266 60 HRGCVNTVSFNTDG---------DILIS-------------------GSDDRRVILWDWKTERVKL---SFHSGHNDNVF 108 (538)
Q Consensus 60 h~~~v~~~~~s~~g---------~~l~t-------------------~~~d~~i~iw~~~~~~~~~---~~~~~~~~~v~ 108 (538)
+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++... ..+..|.+.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56788888888875 56665 5578899999998876432 12256788999
Q ss_pred EEEEeec----CCCceEEEEeCCCcEEEeecccCcee---------eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcE
Q 009266 109 QAKIMPF----TDDRSIVTCAADGQVRHAQILERGGV---------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (538)
Q Consensus 109 ~l~~~~~----~~~~~l~s~~~dg~v~vwd~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (538)
+|+|+|. .++.+||+++.||+|+||++..+... ....+.+|...|++++|+|.+ +|++|+.||+|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEE
Confidence 9999992 12579999999999999999866422 123467899999999999854 79999999999
Q ss_pred EEEecCCCCe-eeeeeecccCCCCCcceeeeeEEE--EEcCCCC-cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCccc
Q 009266 176 QHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAI--AIDPRNA-NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (538)
Q Consensus 176 ~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 251 (538)
++||++++.. ...+.. |...|.++ +|+|+ + ++|++++.|++|+|||+++++...
T Consensus 290 ~lWD~~~~~~~~~~~~~----------H~~~V~sv~~~~s~~-g~~~laS~S~D~tvklWD~~~~~~~~----------- 347 (524)
T 2j04_B 290 AEFDLTDPEVPSFYDQV----------HDSYILSVSTAYSDF-EDTVVSTVAVDGYFYIFNPKDIATTK----------- 347 (524)
T ss_dssp EEEETTBCSSCSEEEEC----------SSSCEEEEEEECCTT-SCCEEEEEETTSEEEEECGGGHHHHC-----------
T ss_pred EEEECCCCCCceEEeec----------ccccEEEEEEEcCCC-CCeEEEEeccCCeEEEEECCCCCccc-----------
Confidence 9999997643 333443 34479998 56776 5 899999999999999999876321
Q ss_pred CCCCccCCCc-cceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCc
Q 009266 252 CPPNLIGDEQ-VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (538)
Q Consensus 252 ~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
.+..+.. ..|.+++|+|+++.|++++ ++.|++|++++
T Consensus 348 ---~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-------------------------------------- 386 (524)
T 2j04_B 348 ---TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-------------------------------------- 386 (524)
T ss_dssp ---EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC--------------------------------------
T ss_pred ---ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc--------------------------------------
Confidence 1111111 2478899999999988887 55899999886
Q ss_pred ccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeec-----CcceeeEEeecCCCCeEEEee
Q 009266 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA-----DRHVVNCIEPHPHSTVLASSG 404 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~s~~~~~l~s~~ 404 (538)
...+.++.+|... |++|+| +|+|++|++|+.||+|+||++..+ .+..++. +...|.+++|+|+++.+.. .
T Consensus 387 ~~~~~~l~gH~~~--V~sva~-Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~ 461 (524)
T 2j04_B 387 AFAVHPLVSRETT--ITAIGV-SRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-D 461 (524)
T ss_dssp TTCCEEEEECSSC--EEEEEC-CSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-C
T ss_pred cccceeeecCCCc--eEEEEe-CCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-c
Confidence 3445678889886 999999 999999999999999999998654 3332221 1125789999999995532 2
Q ss_pred cCCceEEecCCCCcccccCccceeeeecc--cCc----eeeeccCCCCCceeecc
Q 009266 405 IESDIKILTPNAADRATLPTNIEQVLIPD--HIR----WFALGDDDDGDYYFYDI 453 (538)
Q Consensus 405 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~----~l~s~~~d~~~~~~~~~ 453 (538)
.+..+..|.........+.+|...|..++ |++ +|++|+.++...+|.-.
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 22233333334555677888998888777 543 89999999988888643
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-37 Score=298.49 Aligned_cols=282 Identities=18% Similarity=0.219 Sum_probs=228.0
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
.+..+++++.++.|+||++.+++... .....|...|++++|+|++++|++|+.+|.|+||
T Consensus 102 s~~~l~~~~~d~~v~lw~~~~~~~~~--------------------~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 102 SNLNVVAVALERNVYVWNADSGSVSA--------------------LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp CTTSEEEEEETTEEEEEETTTCCEEE--------------------EEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCEEEEECCCeEEEeeCCCCcEeE--------------------eeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 34668888999999999999888751 1222389999999999999999999999999999
Q ss_pred ECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEE
Q 009266 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (538)
++.+++.+..+ .+|...|.+++|++ .+|++++.+|.|++|++....... ..+.+|...|.+++|+|++ .+|++
T Consensus 162 d~~~~~~~~~~-~~~~~~v~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~s 234 (401)
T 4aez_A 162 DVESQTKLRTM-AGHQARVGCLSWNR----HVLSSGSRSGAIHHHDVRIANHQI-GTLQGHSSEVCGLAWRSDG-LQLAS 234 (401)
T ss_dssp ETTTCCEEEEE-CCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-SEEEE
T ss_pred ECcCCeEEEEe-cCCCCceEEEEECC----CEEEEEcCCCCEEEEecccCccee-eEEcCCCCCeeEEEEcCCC-CEEEE
Confidence 99999988877 79999999999954 799999999999999998543322 3377899999999999988 78999
Q ss_pred EcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCccccCCCCCCC
Q 009266 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDFGQ 246 (538)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~ 246 (538)
++.|+.|++||+++++....+.. +...|.+++|+|++..++++++ .++.|++|++++++....
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~----- 299 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTN----------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT----- 299 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECC----------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-----
T ss_pred EeCCCeEEEccCCCCCccEEecC----------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-----
Confidence 99999999999999888776654 3347999999998678888876 799999999998753211
Q ss_pred CCcccCCCCccCCCccceEEEEEcCCCCEEEEEc---CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (538)
. .+...|.+++|+|++++|++++ ++.|++|++.++.
T Consensus 300 ----------~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~------------------------------ 338 (401)
T 4aez_A 300 ----------V-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG------------------------------ 338 (401)
T ss_dssp ----------E-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE------------------------------
T ss_pred ----------E-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc------------------------------
Confidence 1 2356799999999999998843 6799999987631
Q ss_pred CCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee
Q 009266 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 382 (538)
......+.+|... |.+++| +|++++|++++.||.|++|++.+++.+....
T Consensus 339 ------~~~~~~~~~h~~~--v~~~~~-s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 339 ------LTKQVDIPAHDTR--VLYSAL-SPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ------EEEEEEEECCSSC--CCEEEE-CTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ------ceeEEEecCCCCC--EEEEEE-CCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 1223346677776 999999 9999999999999999999999998776543
No 84
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.2e-38 Score=295.34 Aligned_cols=302 Identities=12% Similarity=0.092 Sum_probs=227.4
Q ss_pred CCCCC-ceEEeecc---CCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC---CCEEEE
Q 009266 6 NNNNN-KRARTSVD---KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD---GDILIS 78 (538)
Q Consensus 6 ~~~~~-~~l~t~~~---d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---g~~l~t 78 (538)
++|++ .++++|+. |+.|+||++.+++.. .....+|...|++++|+|+ +++|++
T Consensus 26 ~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 26 WVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------LLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp ECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------EEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred EcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------ceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 45555 56667776 999999999988764 1223368999999999998 799999
Q ss_pred ecCCCeEEEEECCCCc-eeeeeccCCCCCeEEEEE------eecCCCceEEEEeCCCcEEEeecccCc-eeeeeeccccC
Q 009266 79 GSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKI------MPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQ 150 (538)
Q Consensus 79 ~~~d~~i~iw~~~~~~-~~~~~~~~~~~~v~~l~~------~~~~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~ 150 (538)
|+.+|.|++|++.+++ .+..+ .+|...|.+++| +| ++.+|++++.+|.|++|++.++. .+.. +..|.
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~ 160 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGE--GAPEIVTGSRDGTVKVWDPRQKDDPVAN--MEPVQ 160 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC---CCCEEEEEETTSCEEEECTTSCSSCSEE--ECCCT
T ss_pred ecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCC--CccEEEEEeCCCeEEEEeCCCCCCccee--ccccC
Confidence 9999999999999888 55555 799999999965 57 89999999999999999998876 3332 43333
Q ss_pred ----CCcEEEE----EcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC---CCCcEE
Q 009266 151 ----GRAHKLA----IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP---RNANLF 219 (538)
Q Consensus 151 ----~~v~~~~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l 219 (538)
..|.+++ |+|++ .+|++++.++.|++|++++++...... +...|.+++|+| + +.+|
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~-~~~l 227 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWETN-----------IKNGVCSLEFDRKDIS-MNKL 227 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEESCSSSS-CCEE
T ss_pred CCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeeecC-----------CCCceEEEEcCCCCCC-CCEE
Confidence 3788888 67888 789999999999999999988754433 344799999999 6 7899
Q ss_pred EEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEc-CCeEEEeeccCCCCCCC
Q 009266 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNP 297 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~~~d~~~~~~~~~ 297 (538)
++++.+|.|++|++++++...... ......|...|.+++|+|+++ +|++++ ++.|++|++..+.....
T Consensus 228 ~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 228 VATSLEGKFHVFDMRTQHPTKGFA----------SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp EEEESTTEEEEEEEEEEETTTEEE----------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred EEECCCCeEEEEeCcCCCccccee----------eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 999999999999999875321100 001125688999999999998 788777 67999999987654332
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEE-EeccCCeEEEeeccCcc
Q 009266 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~-~gs~dg~i~iwd~~~~~ 376 (538)
........ .. ......+..+.+|... |.+++| +|++++|+ +++.||.|+||++.+.+
T Consensus 298 ~~~~g~~~--------------~~-----~~~~~~~~~~~~~~~~--v~~~~~-s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 298 KDSEGIEM--------------GV-----AGSVSLLQNVTLSTQP--ISSLDW-SPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCTTSCCC--------------CC-----CCEEEEEEEEECCSSC--EEEEEE-CSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccCCCCcc--------------cc-----ccccceeeccccCCCC--eeEEEE-cCCCCeEEEEecCCCcEEEEECCCcc
Confidence 21100000 00 0012456677888776 999999 99999998 89999999999998765
Q ss_pred e
Q 009266 377 L 377 (538)
Q Consensus 377 ~ 377 (538)
.
T Consensus 356 ~ 356 (357)
T 3i2n_A 356 K 356 (357)
T ss_dssp -
T ss_pred c
Confidence 4
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=294.75 Aligned_cols=283 Identities=14% Similarity=0.193 Sum_probs=238.4
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.++|++++|++++.+|.|+||++.+++.+ ..+.+|...|++++|+|++++|++++.||.
T Consensus 39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 39 KYNKEGDLLFSCSKDSSASVWYSLNGERL---------------------GTLDGHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EECTTSCEEEEEESSSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred EEcCCCCEEEEEeCCCEEEEEeCCCchhh---------------------hhhhhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 35679999999999999999999988764 678899999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-----CcEEEeecccCcee---------eeeeccccC
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGV---------ETKLLGKHQ 150 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-----g~v~vwd~~~~~~~---------~~~~~~~~~ 150 (538)
|++|++.+++.+..+. |...|.+++|+| ++.+|++++.+ +.|++|++...... ....+..|.
T Consensus 98 i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWK--SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEEEETTTCCEEEEEE--CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEEEECCCCcEEEEee--cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 9999999999888773 888999999999 99999999998 99999999876432 112234455
Q ss_pred C--CcEEEEEcCCCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCe
Q 009266 151 G--RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (538)
Q Consensus 151 ~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 227 (538)
. .+.+++|+|++ .+|++++.+|.|++|++++ .+.+..+..+ ...|.+++|+|+ +.+|++++.+|.
T Consensus 174 ~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~~~~~d~~ 241 (369)
T 3zwl_B 174 GLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLH----------EKSISDMQFSPD-LTYFITSSRDTN 241 (369)
T ss_dssp TCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECC----------SSCEEEEEECTT-SSEEEEEETTSE
T ss_pred CccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecC----------CCceeEEEECCC-CCEEEEecCCce
Confidence 5 89999999998 6899999999999999998 5666666543 347999999997 789999999999
Q ss_pred EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CC--------------eEEEeeccCC
Q 009266 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--------------FIYLFTQDMG 292 (538)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~--------------~i~~~d~~~~ 292 (538)
|++|++++++.... . .+...+.+++|+|+++++++++ ++ .+++|++.+
T Consensus 242 i~v~d~~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~- 304 (369)
T 3zwl_B 242 SFLVDVSTLQVLKK---------------Y-ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF- 304 (369)
T ss_dssp EEEEETTTCCEEEE---------------E-ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-
T ss_pred EEEEECCCCceeee---------------e-cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-
Confidence 99999998753221 1 1456899999999999998887 44 688888776
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
...+..+.+|... |.+++| +|++++|++++.||.|+||++
T Consensus 305 -------------------------------------~~~~~~~~~~~~~--v~~~~~-s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 305 -------------------------------------EEEIGRVQGHFGP--LNTVAI-SPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp -------------------------------------CCEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEEE
T ss_pred -------------------------------------CcchhheecccCc--EEEEEE-CCCCCEEEEEcCCCeEEEEEC
Confidence 4456677888876 999999 999999999999999999999
Q ss_pred cCcceeEEe
Q 009266 373 KGGELIRVI 381 (538)
Q Consensus 373 ~~~~~~~~~ 381 (538)
..+.....+
T Consensus 345 ~~~~~~~~~ 353 (369)
T 3zwl_B 345 EKSYFDFKY 353 (369)
T ss_dssp CHHHHTCCC
T ss_pred ccccchhHH
Confidence 877655444
No 86
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.6e-38 Score=301.66 Aligned_cols=295 Identities=14% Similarity=0.061 Sum_probs=228.1
Q ss_pred ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC----C---CEEEEecCCC
Q 009266 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----G---DILISGSDDR 83 (538)
Q Consensus 11 ~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----g---~~l~t~~~d~ 83 (538)
++|++|+.||+|+||++.+++... .+.+...+.+|...|++++|+|+ + ++|++++.++
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNEN---------------PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCC---------------GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred CeEEEEcCCCEEEEEECCCccccc---------------CCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 799999999999999999776210 11235677899999999999999 9 9999999999
Q ss_pred eEEEEECCCCce-----eeeeccCC-----CCCeEEEEEe----ecCCCce-EEEEeCCCcEEEeeccc------Cceee
Q 009266 84 RVILWDWKTERV-----KLSFHSGH-----NDNVFQAKIM----PFTDDRS-IVTCAADGQVRHAQILE------RGGVE 142 (538)
Q Consensus 84 ~i~iw~~~~~~~-----~~~~~~~~-----~~~v~~l~~~----~~~~~~~-l~s~~~dg~v~vwd~~~------~~~~~ 142 (538)
.|++|++.+++. +..+ ..| ...|.+++|+ | ++.+ |++++.+|.|++|++.+ +..+.
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDR--LLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCC--CCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence 999999988876 5555 677 5899999999 9 9999 99999999999999987 55443
Q ss_pred -----eeec-----cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeee---cccCCCCCcceeeeeEEE
Q 009266 143 -----TKLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC---RPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 143 -----~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~ 209 (538)
.... ..|...|.+++|+|++ +|++++.++.|++|++++++.+..+.. +.. ....|.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~-------~~~~i~~i 239 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMIN-------NSNSIRSV 239 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---C-------CCCCEEEE
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccc-------cCCccceE
Confidence 3111 5588999999999988 889999999999999999988877765 200 13479999
Q ss_pred EEcCCCCcEEEEEeCC---CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEE
Q 009266 210 AIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (538)
Q Consensus 210 ~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~ 285 (538)
+|+|+ +.+|++++.+ |.|++|++++++............ ........|...|.+++|+|++++|++++ ++.|+
T Consensus 240 ~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 240 KFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS--QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp EECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred EECCC-CCEEEEEecCCCCceEEEEECCCCcccceeccCcccc--cccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 99998 7899999999 999999999875432211000000 00000011678999999999999999988 66999
Q ss_pred EeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee------cc---------------cccee
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK------GH---------------RNCVT 344 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~~~ 344 (538)
+|++.++. .+..+. +| ...
T Consensus 317 iwd~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 356 (397)
T 1sq9_A 317 FWDVKTKE--------------------------------------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-- 356 (397)
T ss_dssp EEETTTTE--------------------------------------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC--
T ss_pred EEEcCCCc--------------------------------------eeEEEecccCcccchhhhhccccccccccCCc--
Confidence 99998742 233333 33 554
Q ss_pred eeEEEEecCCC----------cEEEEeccCCeEEEeeccCcc
Q 009266 345 VKGVNFFGPKC----------EYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 345 i~~v~~~s~~~----------~~l~~gs~dg~i~iwd~~~~~ 376 (538)
|.+++| +|++ ++|++|+.||.|++|++.+|+
T Consensus 357 v~~~~~-~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 357 VFDVKF-LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEE-ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred eeEEEe-ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999999 9998 799999999999999998764
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=295.69 Aligned_cols=339 Identities=15% Similarity=0.137 Sum_probs=229.3
Q ss_pred CCC-CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeee-----eEEcCCcCcEEEEEEcC-CCCEEEE
Q 009266 6 NNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIY-----AKLDKHRGCVNTVSFNT-DGDILIS 78 (538)
Q Consensus 6 ~~~-~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~~~~s~-~g~~l~t 78 (538)
++| ++++|++|+.||.|+||++.+++.... ...... ....+|...|++++|+| ++.+|++
T Consensus 51 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 51 IEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-------------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECTTTCCEEEEEETTSCEEEEECCCCSSSSC-------------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred EecCCCCEEEEEcCCCeEEEEECCCCcccce-------------EeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 455 899999999999999999998776532 111111 11246999999999999 7889999
Q ss_pred ecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecC-CCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEE
Q 009266 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (538)
Q Consensus 79 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (538)
++.++.|++|++.+++.+..+ .+...+.+++|+|.. ++.+|++++.++.|++|++.++..+.. +..|...|.+++
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~v~~~~ 193 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEILAVS 193 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE--ECCCCSCEEEEE
T ss_pred EeCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee--ecCCCCcEEEEE
Confidence 999999999999999887766 377889999999821 334899999999999999998876654 778999999999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEecCCCC-eeeeeeecccC-----CCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 009266 158 IEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPID-----DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (538)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 231 (538)
|+|+++.+|++++.+|.|++|+++++. ....+..+... ......+...|.+++|+|+ +.+|++++.+|.|++|
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLW 272 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEE
Confidence 999996689999999999999998876 33332211100 0001125568999999997 7899999999999999
Q ss_pred EcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccc
Q 009266 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (538)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (538)
++++++....... .............+...+...+++++.++.|++|++.+
T Consensus 273 d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-------------------- 323 (408)
T 4a11_B 273 NSSNGENTLVNYG---------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS-------------------- 323 (408)
T ss_dssp ETTTCCBCCCCCC---------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT--------------------
T ss_pred ECCCCccceeccc---------cccccccccceeEEecCCCceEEEEecCCEEEEEECcC--------------------
Confidence 9998764322110 00011111122233334455667777788999999987
Q ss_pred cCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEE
Q 009266 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCI 391 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 391 (538)
...+..+.+|... |.+++| +|++++|++|+.||.|++|++.+++++.....+.. ..
T Consensus 324 ------------------~~~~~~~~~~~~~--v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~ 379 (408)
T 4a11_B 324 ------------------GEQITMLKGHYKT--VDCCVF-QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KS 379 (408)
T ss_dssp ------------------CCEEEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEEECC-----------------
T ss_pred ------------------CcceeeeccCCCe--EEEEEE-cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---cc
Confidence 4456778888876 999999 99999999999999999999999988766554332 22
Q ss_pred eecC-CCCeEEEeecCCceEEecCC
Q 009266 392 EPHP-HSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 392 ~~s~-~~~~l~s~~~dg~v~vw~~~ 415 (538)
.+.| ....+.+++.++.+++|+..
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 380 QLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -------------------------
T ss_pred ccccccceeecccCccCceeecCCc
Confidence 3333 23356677889999999864
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.2e-37 Score=294.12 Aligned_cols=290 Identities=12% Similarity=0.140 Sum_probs=220.3
Q ss_pred CCCCC-ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC-CCCEEEEecCCC
Q 009266 6 NNNNN-KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDR 83 (538)
Q Consensus 6 ~~~~~-~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~t~~~d~ 83 (538)
++|++ ++|++|+.||.|+||++.+++... ...+.+|...|++++|+| ++++|++++.|+
T Consensus 81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 81 WHPTHPTTVAVGSKGGDIILWDYDVQNKTS-------------------FIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp ECSSCTTEEEEEEBTSCEEEEETTSTTCEE-------------------EECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ECCCCCCEEEEEcCCCeEEEEeCCCcccce-------------------eeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 45565 899999999999999999777641 122347999999999999 789999999999
Q ss_pred eEEEEECCCCceeeeec--cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCC
Q 009266 84 RVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
.|++|++.+ ..+..+. ..|...|.+++|+| ++.+|++++.++.|++|++. ++.+.. +..|...|.+++|+|+
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~--~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLD-GHEIFK--EKLHKAKVTHAEFNPR 215 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEEETT-SCEEEE--EECSSSCEEEEEECSS
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEEECC-CCEEEE--eccCCCcEEEEEECCC
Confidence 999999985 4444442 23457899999999 99999999999999999994 444443 7789999999999999
Q ss_pred CCcEEEEEcCCCcEEEEecCC----CCeeeeeeecccCCCCCcceeeeeEEEEEcC-CCCcEEEEEeCCCeEEEEEcCCc
Q 009266 162 SPHVFYTCGEDGLVQHFDLRT----GAATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
++.+|++++.|+.|++||+++ +..+..+. +...|.+++|+| + +.+|++++.|+.|++|+++++
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~-~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-----------HEKPVNAAYFNPTD-STKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-----------CSSCEEEEEECTTT-SCEEEEEESSSEEEEEETTBT
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-----------CCCceEEEEEcCCC-CCEEEEEcCCCcEEEEECCCC
Confidence 955999999999999999998 44444442 444899999999 7 789999999999999999987
Q ss_pred cccCCCCCCCCC--cccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccC
Q 009266 237 KWDGSTDFGQPA--DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (538)
Q Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (538)
+........... .........-.....+..++|+|++++ +++ ++.|++|++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~---------------------- 339 (383)
T 3ei3_B 284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS---------------------- 339 (383)
T ss_dssp TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT----------------------
T ss_pred ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC----------------------
Confidence 653322110000 000000111112345667888888887 444 67999999987
Q ss_pred CCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccC
Q 009266 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~ 374 (538)
...+..+.++.....+..++| +|++++|++|+ ||.|+||++.+
T Consensus 340 ----------------~~~~~~l~~~~~~~~~~~~~~-s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 340 ----------------GGLVHQLRDPNAAGIISLNKF-SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ----------------CCEEEEECBTTBCSCCCEEEE-CTTSSEEEEEE-TTEEEEEECC-
T ss_pred ----------------CceeeeecCCCCCceEEEEEE-ecCccEEEEec-CCcEEEEecCC
Confidence 344566666443223667788 99999999997 99999999864
No 89
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.2e-37 Score=289.45 Aligned_cols=310 Identities=12% Similarity=0.120 Sum_probs=224.4
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCc
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~ 129 (538)
...+.+|.+.|++|+|+|++++||+|+.||.|+||++.++. .+..+ .+|...|++++|+|..++.+|++++.||.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 35678999999999999999999999999999999998764 33333 78999999999998223899999999999
Q ss_pred EEEeecccCce-------eeeeeccccCCCcEEEEEcCC--CCcEEEEEcCCCcEEEEecCCCCeeeeeeeccc---CCC
Q 009266 130 VRHAQILERGG-------VETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI---DDR 197 (538)
Q Consensus 130 v~vwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~ 197 (538)
|++|++.++.. .....+..|...|.+++|+|+ + .+|++++.|+.|++||+++++.+..+..... ...
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 99999987632 223447789999999999998 7 7899999999999999998876655432111 011
Q ss_pred CCcceeeeeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC--
Q 009266 198 RNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-- 273 (538)
Q Consensus 198 ~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-- 273 (538)
....+...+.+++|+|. .+.+|++++.++.+.+|....++.. .......|...|.+++|+|++
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-------------VAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-------------EEEECCCCCSCEEEEEECCCSSC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-------------eeeecCCCCcceeEEEECCCCCC
Confidence 11124557999999996 3689999999999988887765421 122334578899999999998
Q ss_pred --CEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE
Q 009266 274 --ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 274 --~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
++|++++ ++.|++|++..+...... ..+... +.....
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------------------~~~~~~--~~~~~~ 268 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLAS--------------------------------------EESLTN--SNMFDN 268 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC---------------------------------------------------------
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCcccc--------------------------------------CCcccc--eeccCC
Confidence 7888888 669999999875322111 001100 111222
Q ss_pred ecCCCcEEE----EeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 351 FGPKCEYVV----SGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 351 ~s~~~~~l~----~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
++...+++ .+.....+.+|+....+++..+.+|...|++++|+|++++|++++.||.|+||++.+++.
T Consensus 269 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 269 -SADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred -CcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 23333333 333455677888888889999999999999999999999999999999999999987643
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=281.90 Aligned_cols=279 Identities=16% Similarity=0.230 Sum_probs=224.8
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
++++ +||+|. |++|+|||+.+|++++ ...+.+|...|++++|+|++++||+|+.||+|+
T Consensus 34 S~~~-~lAvg~-D~tV~iWd~~tg~~~~-------------------~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~ 92 (318)
T 4ggc_A 34 SSGN-VLAVAL-DNSVYLWSASSGDILQ-------------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 92 (318)
T ss_dssp CTTS-EEEEEE-TTEEEEEETTTCCEEE-------------------EEECCSTTCCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCC-EEEEEe-CCEEEEEECCCCCEEE-------------------EEEecCCCCeEEEEEECCCCCEEEEEECCCcEE
Confidence 3444 677664 9999999999998762 234567889999999999999999999999999
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEE
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
||++.+++.+..+ .+|...+.++.+ .+.+|++++.++.+++|+........ ..+.+|...+..+.+.+.+ .+|
T Consensus 93 iw~~~~~~~~~~~-~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~l 165 (318)
T 4ggc_A 93 LWDVQQQKRLRNM-TSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG-RHL 165 (318)
T ss_dssp EEETTTTEEEEEE-ECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-SEE
T ss_pred EeecCCceeEEEe-cCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeE-EEEcCccCceEEEEEcCCC-CEE
Confidence 9999999988877 789888876655 56899999999999999988765433 3477899999999999999 689
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE--EEEeCCCeEEEEEcCCccccCCCCC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF--AVAGSDEYTRLYDIRKYKWDGSTDF 244 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (538)
++++.|+.|++||+++++.......... .+...|.+++++|.+..++ ++++.++.|++|+.+.....
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----- 234 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVPLQTFT------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----- 234 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCCSEEEC------CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----
T ss_pred EEEecCcceeEEECCCCcccccceeeec------ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----
Confidence 9999999999999998765432211110 1344789999999866655 45667899999999876421
Q ss_pred CCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc---CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccC
Q 009266 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (538)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (538)
....+...+..+.|+|.+..+++++ ++.|++|++.+
T Consensus 235 -----------~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~------------------------------ 273 (318)
T 4ggc_A 235 -----------SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT------------------------------ 273 (318)
T ss_dssp -----------EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT------------------------------
T ss_pred -----------ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC------------------------------
Confidence 1223456799999999998877654 56899999987
Q ss_pred CCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
...+..+.+|... |++++| +|+|++||+|+.||+|+||++....
T Consensus 274 --------~~~~~~l~gH~~~--V~~l~~-spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 274 --------MAKVAELKGHTSR--VLSLTM-SPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp --------CCEEEEECCCSSC--EEEEEE-CTTSSCEEEEETTTEEEEECCSCCC
T ss_pred --------CcEEEEEcCCCCC--EEEEEE-cCCCCEEEEEecCCeEEEEECCCCC
Confidence 4567788999887 999999 9999999999999999999986643
No 91
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-38 Score=298.13 Aligned_cols=313 Identities=10% Similarity=-0.007 Sum_probs=221.8
Q ss_pred CCCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC
Q 009266 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (538)
Q Consensus 3 ~a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d 82 (538)
...++|+|+++|+++.|++|+ +..+++ .+++|...|.+++|+|+| .+
T Consensus 20 sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------~l~gh~~~v~~V~FsPdg-------~~ 66 (588)
T 2j04_A 20 NLTWARDGTLYLTTFPDISIG--QPKYAK------------------------DINCNSKNLFHVKEFPLE-------FE 66 (588)
T ss_dssp CEEECTTSCEEEECSSSEEEE--EECCCS------------------------CCSSBGGGTEEEEEECCC-------CC
T ss_pred EEEECCCCCEEEEEcCCceee--cccccc------------------------eecCCCccEEEEEECCCC-------Cc
Confidence 345789999999999999999 644333 247899999999999999 45
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC-----CcEEEE
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-----RAHKLA 157 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~-----~v~~~~ 157 (538)
+.+.+|+. +....+...|...|.+++|+| +|.+||+++.+|.|++|+... .+.. +. |.. .|.+++
T Consensus 67 ~~~~~~~~---~~~~~~~~~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~--l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 67 NKLDFELA---QQNGLLNSQPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTN--LD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp CTTTTSCC---CSSCSSTTSCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEE--CC-CSSCSTTTCEEEEE
T ss_pred ceEEEEeC---CCceEeecCCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeee--cc-CCCccccccEEEEE
Confidence 55555553 322223236688999999999 999999999999999999644 3322 45 554 599999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEecCCCCe-------eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEE
Q 009266 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAA-------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (538)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 230 (538)
|+|+| ++|++|+.||+|+||++.++.. +..+..+. .+ |...|.+++|+|+ + +++++.|++|++
T Consensus 137 fSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~----~g--h~~~V~sVawSPd-g--Laass~D~tVrl 206 (588)
T 2j04_A 137 WNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD----AG--SKDWVTHIVWYED-V--LVAALSNNSVFS 206 (588)
T ss_dssp ECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC----TT--CCCCEEEEEEETT-E--EEEEETTCCEEE
T ss_pred EcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc----cc--ccccEEEEEEcCC-c--EEEEeCCCeEEE
Confidence 99999 7899999999999999998753 23332221 12 3458999999997 5 888999999999
Q ss_pred EEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCcccccccc
Q 009266 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (538)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (538)
|++..+.... ....+..+|...|.+++|+ |+.||+++++.|++|++..+
T Consensus 207 Wd~~~~~~~~-----------~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~------------------ 255 (588)
T 2j04_A 207 MTVSASSHQP-----------VSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNY------------------ 255 (588)
T ss_dssp ECCCSSSSCC-----------CEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTT------------------
T ss_pred EECCCCcccc-----------ceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCC------------------
Confidence 9998764210 0011223567899999999 68999998889999998763
Q ss_pred ccCCCCccccCCCCCCCCcccCCceee-ccccceeeeEEEE-ecCCCcEEEEeccCCeEEEeeccCcceeEEeecCccee
Q 009266 311 EMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV 388 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~-~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v 388 (538)
....+. +|... +..++| .+|++..|++++.+|+ ++|...
T Consensus 256 ---------------------~~~~~~~gh~~~--V~~va~~~s~d~~~La~a~edG~-klw~~d--------------- 296 (588)
T 2j04_A 256 ---------------------SISSLKTGSLEN--FHIIPLNHEKESTILLMSNKTSY-KVLLED--------------- 296 (588)
T ss_dssp ---------------------EEEEEECSCCSC--CCEEEETTCSSCEEEEECSSCEE-EEEESS---------------
T ss_pred ---------------------eEEEEEcCCCce--EEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------
Confidence 122333 67776 777774 2789999999999999 999874
Q ss_pred eEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceeeeecc--cCc-eeeecc
Q 009266 389 NCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVLIPD--HIR-WFALGD 442 (538)
Q Consensus 389 ~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~ 442 (538)
.++++|++.++++. |++|++|+...+....+.+ ...|..++ |+| .+|+++
T Consensus 297 -~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 -ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp -SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred -cEEECCCceEEEEc--CCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 13355555555543 5555555554444332222 33343333 444 444443
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-36 Score=294.21 Aligned_cols=282 Identities=21% Similarity=0.304 Sum_probs=231.5
Q ss_pred eEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEee
Q 009266 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd 134 (538)
....+|...|+|++| ++++|++|+.||.|++|++.+++.+..+ .+|...|.+++| ++.+|++|+.||+|++|+
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY----DERVIITGSSDSTVRVWD 199 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC----CSSEEEEEETTSCEEEEE
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE----CCCEEEEEcCCCeEEEEE
Confidence 334567788999887 6899999999999999999999988777 799999999988 568999999999999999
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
+.+++.+.. +.+|...|.+++|++ .+|++|+.||.|++|++.++........... +...|.+++|.
T Consensus 200 ~~~~~~~~~--~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~-- 265 (435)
T 1p22_A 200 VNTGEMLNT--LIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVG-------HRAAVNVVDFD-- 265 (435)
T ss_dssp SSSCCEEEE--ECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECC-------CSSCEEEEEEE--
T ss_pred CCCCcEEEE--EcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecC-------CCCcEEEEEeC--
Confidence 998887655 788999999999975 4799999999999999998876533222111 44478999993
Q ss_pred CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCC
Q 009266 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (538)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (538)
+.+|++|+.||.|++||+++++.. .....|...|.+++|+ +.+|++++ ++.|++|++.+
T Consensus 266 -~~~l~s~~~dg~i~vwd~~~~~~~---------------~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~-- 325 (435)
T 1p22_A 266 -DKYIVSASGDRTIKVWNTSTCEFV---------------RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-- 325 (435)
T ss_dssp -TTEEEEEETTSEEEEEETTTCCEE---------------EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--
T ss_pred -CCEEEEEeCCCeEEEEECCcCcEE---------------EEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC--
Confidence 579999999999999999987532 2233567789999994 56787777 67999999987
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
...+..+.+|... |.+++| ++++|++|+.||.|++|++.
T Consensus 326 ------------------------------------~~~~~~~~~h~~~--v~~~~~---~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 326 ------------------------------------GACLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp ------------------------------------CCEEEEECCCSSC--EEEEEC---CSSEEEEEETTSCEEEEEHH
T ss_pred ------------------------------------CCEEEEEeCCcCc--EEEEEe---cCCEEEEEeCCCcEEEEECC
Confidence 3456677888876 888877 68899999999999999998
Q ss_pred Ccc---------eeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 374 GGE---------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 374 ~~~---------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
+++ ++..+.+|.+.|++++| ++++|++++.||.|++|++.+....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp HHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred CCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 776 78899999999999999 7889999999999999999876543
No 93
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.5e-37 Score=290.69 Aligned_cols=307 Identities=12% Similarity=0.088 Sum_probs=228.4
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC----CCEEEEecCCCe
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GDILISGSDDRR 84 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----g~~l~t~~~d~~ 84 (538)
...++++++.++.|+||++.+++.+.. +. ......|...|++++|+|+ +++|++|+.+|.
T Consensus 33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~---------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 33 GDPLVFATVGSNRVTLYECHSQGEIRL---------------LQ-SYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TSCEEEEEEETTEEEEEEECGGGCEEE---------------EE-EEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCceEEEECCCCEEEEEEcCCCcEEEe---------------ee-eccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 455677777788999999998776521 11 1122237789999999998 679999999999
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee-eccccCCCcEEEEEcCCCC
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 163 (538)
|+||++.+++.+..+ .+|...|.+++|+| .++.+|++++.+|.|++|++.+++.+... .+..|...|.+++|+|++
T Consensus 97 i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 173 (366)
T 3k26_A 97 IRIINPITMQCIKHY-VGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG- 173 (366)
T ss_dssp EEEECTTTCCEEEEE-ESCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-
T ss_pred EEEEEchhceEeeee-cCCCCcEEEEEECC-CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-
Confidence 999999999988777 78999999999998 25789999999999999999988766541 126899999999999998
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecc------------------cCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRP------------------IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 225 (538)
.+|++++.||.|++|++++++....+.... ........+...|.+++|+ +.+|++++.+
T Consensus 174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d 250 (366)
T 3k26_A 174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCE 250 (366)
T ss_dssp SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSS
T ss_pred CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecC
Confidence 689999999999999999876554332100 0000000144579999998 3699999999
Q ss_pred CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC--CCEEEEEc-CCeEEEeeccCCCCCCCCCCCC
Q 009266 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (538)
|.|++|++++.+.......... ...........|...|.+++|+|+ +++|++++ ++.|++|++.++...
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~------- 322 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSE-SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH------- 322 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTC-CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------
T ss_pred CEEEEEeCCCccccccccccCC-cchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------
Confidence 9999999987653111000000 000112233346678899999999 99999988 569999999874211
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeecc
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~ 373 (538)
......+.+|.....|.+++| +|++++|++++.||.|+||++.
T Consensus 323 ---------------------------~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 323 ---------------------------KAKCTTLTHHKCGAAIRQTSF-SRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ---------------------------GCEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTSEEEEEEC-
T ss_pred ---------------------------cccceEEcccccCCceEEEEe-CCCCCeEEEEeCCCEEEEEEec
Confidence 112346677743334999999 9999999999999999999985
No 94
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-36 Score=275.71 Aligned_cols=245 Identities=18% Similarity=0.206 Sum_probs=195.7
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC--CCEEEEecCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISGSDD 82 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~t~~~d 82 (538)
-|+|++++||+|+.|++|+||++.++.. ++...+.+|.+.|++++|+|. +++||||+.|
T Consensus 16 ~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 16 VMDYYGKRMATCSSDKTIKIFEVEGETH-------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp EECTTSSEEEEEETTSCEEEEEBCSSCB-------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EECCCCCEEEEEeCCCEEEEEecCCCCc-------------------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 3578999999999999999999974321 124678999999999999864 8999999999
Q ss_pred CeEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCC--CceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 83 RRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 83 ~~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
++|+||++.+++ .+..+ .+|...|.+++|+| + +.+|++++.|++|++|++.++.......+.+|...|.+++|
T Consensus 77 ~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p--~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~ 153 (297)
T 2pm7_B 77 GKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAP--HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (297)
T ss_dssp TEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred CEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCc--CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEee
Confidence 999999998875 33334 68999999999999 6 88999999999999999987643333457789999999999
Q ss_pred cCCC------------CcEEEEEcCCCcEEEEecCCCCe----eeeeeecccCCCCCcceeeeeEEEEEcCCC--CcEEE
Q 009266 159 EPGS------------PHVFYTCGEDGLVQHFDLRTGAA----TELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFA 220 (538)
Q Consensus 159 ~~~~------------~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~ 220 (538)
+|++ ..+|++|+.|++|++|+++++.. ...+.. |...|.+++|+|++ +.+|+
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~----------H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG----------HSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC----------CSSCEEEEEECCCCSSSEEEE
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC----------CCCceEEEEECCCCCCceEEE
Confidence 9973 25899999999999999988763 223332 44489999999974 48999
Q ss_pred EEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccC
Q 009266 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (538)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (538)
+++.|++|+||+++....... .. ......+...|.+++|+|+|++|++++ ++.|++|+...
T Consensus 224 s~s~D~~v~iWd~~~~~~~~~--------~~--~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 224 SVSQDRTCIIWTQDNEQGPWK--------KT--LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEETTSCEEEEEESSTTSCCE--------EE--ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEECCCcEEEEEeCCCCCccc--------ee--eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999999999986421000 00 001124567899999999999999888 66999999764
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=289.08 Aligned_cols=261 Identities=16% Similarity=0.260 Sum_probs=210.8
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECC--CCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
+..+.+|.+.|++++|+|++++||+|+.||.|+||++. +++.+..+ .+|...|++++|+|..++.+|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 56789999999999999999999999999999999997 44555555 7899999999999811289999999999999
Q ss_pred EeecccCceeeeeeccccCCCcEEEEEcCC--CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 132 HAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
+|++.+++......+..|...|.+++|+|+ + .+|++++.++.|++|++++......+.... +...|.++
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------~~~~v~~~ 153 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVNSA 153 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEEC--------CTTCEEEE
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecC--------CCCceEEE
Confidence 999998875555558889999999999998 7 789999999999999999875443332211 34479999
Q ss_pred EEcCC------------CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEE
Q 009266 210 AIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (538)
Q Consensus 210 ~~~~~------------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 277 (538)
+|+|. ++.+|++++.+|.|++|+++..+. .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------~------------- 195 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------------------------T------------- 195 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-------------------------E-------------
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-------------------------c-------------
Confidence 99994 257777778888888887765320 0
Q ss_pred EEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCC---
Q 009266 278 SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--- 354 (538)
Q Consensus 278 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~--- 354 (538)
......+.+|... |.+++| +|+
T Consensus 196 ----------------------------------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~ 220 (379)
T 3jrp_A 196 ----------------------------------------------------YVLESTLEGHSDW--VRDVAW-SPTVLL 220 (379)
T ss_dssp ----------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCCCSS
T ss_pred ----------------------------------------------------eeeEEEEecccCc--EeEEEE-CCCCCC
Confidence 0112345556665 899998 999
Q ss_pred CcEEEEeccCCeEEEeeccCcce-----eEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 355 CEYVVSGSDCGRIFIWKKKGGEL-----IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 355 ~~~l~~gs~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
+++|++++.||.|+||++.++.. +.....|...|++++|+|++++|++++.||.|+||++...
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 89999999999999999988642 2222347889999999999999999999999999998753
No 96
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=302.00 Aligned_cols=318 Identities=12% Similarity=0.185 Sum_probs=237.6
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc---Cceeeee
Q 009266 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE---RGGVETK 144 (538)
Q Consensus 68 ~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~---~~~~~~~ 144 (538)
.|+|+++.+++++ .|+ .+++.+..+..+|...|++++|+|. ++.+|++|+.||+|+||++.+ +......
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPG-ETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECS-SSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCC-CCCEEEEecCCceEEEeECcccccCccccee
Confidence 3677888887765 488 4577778877899999999999982 578999999999999999977 4322211
Q ss_pred eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecC---CCCeeeeeeecccCCCCCcc--eeeeeEEEE--EcCCCCc
Q 009266 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR---TGAATELFTCRPIDDRRNYM--TVVNLNAIA--IDPRNAN 217 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~--~~~~~~~ 217 (538)
....|...|++++|+|++ .+|++++.||.|++|++. +++....+..+.......+. +...+.++. ++|+ +.
T Consensus 106 ~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~ 183 (437)
T 3gre_A 106 LTYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KS 183 (437)
T ss_dssp EEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CE
T ss_pred eeccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC-CC
Confidence 122589999999999988 789999999999999995 56555544433211111111 223455555 5566 78
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCC-CccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD-EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~ 295 (538)
+|++++.+|.|++||+++++.. ..+... |...|++++|+|++++|++++ ++.|++|++++
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~--------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---- 245 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERL--------------QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF---- 245 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEE--------------EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT----
T ss_pred EEEEEeCCCeEEEEeCCCCeee--------------EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC----
Confidence 9999999999999999987532 112221 678999999999999999988 66899999986
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee-ccccceeeeEEEE---ecCCCcEEEEeccCCeEEEee
Q 009266 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNF---FGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~---~s~~~~~l~~gs~dg~i~iwd 371 (538)
...+..+. .|... |.+++| ++|++++|++|+.||.|+||+
T Consensus 246 ----------------------------------~~~~~~~~~~~~~~--v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 246 ----------------------------------NVLIRSWSFGDHAP--ITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp ----------------------------------TEEEEEEBCTTCEE--EEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred ----------------------------------ccEEEEEecCCCCc--eEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 33344443 45443 888854 156788999999999999999
Q ss_pred ccCcceeEEeecC--------------------------cceeeEEeecCCCCeEEEeecCCceEEecCCCCcccc-cCc
Q 009266 372 KKGGELIRVIEAD--------------------------RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT-LPT 424 (538)
Q Consensus 372 ~~~~~~~~~~~~h--------------------------~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~-~~~ 424 (538)
+.+++++..+.+| ...|++++|+ ++++|++++.|+.|++|++.+++... +.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence 9999988877644 4557788888 67899999999999999998876432 222
Q ss_pred -------------------------------------cceeeeecc--cC--c-eeeeccCCCCCcee
Q 009266 425 -------------------------------------NIEQVLIPD--HI--R-WFALGDDDDGDYYF 450 (538)
Q Consensus 425 -------------------------------------~~~~~~~~~--~~--~-~l~s~~~d~~~~~~ 450 (538)
|...|..+. +. + +|++++.+|....|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 566666655 32 4 99999999988776
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=275.18 Aligned_cols=274 Identities=13% Similarity=0.182 Sum_probs=221.2
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
|++++|++|+.||.|+||++.+++.. ..+..|...|.+++|+|++++|++|+.++.|++
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQWLG---------------------TVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSSEEE---------------------EEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCCCEEEEEEcCCcEEEEECCCCEEE---------------------EEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 77889999999999999999877653 567789999999999999999999999999999
Q ss_pred EECCCC---ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC-CCC
Q 009266 88 WDWKTE---RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-GSP 163 (538)
Q Consensus 88 w~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 163 (538)
|++... +.+..+ .+|...|.+++|. +.+|++++.+|.|++|+ ...... .+..|...+.+++|.| ++
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~~--~~~~~~~~v~~~~~~~~~~- 155 (313)
T 3odt_A 86 VPLFATSGEDPLYTL-IGHQGNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLVY--NLQAHNASVWDAKVVSFSE- 155 (313)
T ss_dssp EETTCCTTSCC-CEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEEE--EEECCSSCEEEEEEEETTT-
T ss_pred EEeeecCCCCcccch-hhcccCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEEE--ecccCCCceeEEEEccCCC-
Confidence 998764 344444 7899999999994 47999999999999999 333443 3778999999999998 55
Q ss_pred cEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCC
Q 009266 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 243 (538)
.+|++++.++.|++|+ ..+....+... +...+.+++|+|+ +. |++++.+|.|++|++++++..
T Consensus 156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~---------~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~---- 218 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ--NDKVIKTFSGI---------HNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVL---- 218 (313)
T ss_dssp TEEEEEETTSCEEEEE--TTEEEEEECSS---------CSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEE----
T ss_pred CEEEEEECCCCEEEEe--cCceEEEEecc---------CcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhh----
Confidence 7899999999999999 33444444321 3347999999997 55 999999999999999987532
Q ss_pred CCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 009266 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (538)
.....|...|.+++|+|++++++++.++.|++|++.+
T Consensus 219 -----------~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~-------------------------------- 255 (313)
T 3odt_A 219 -----------RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN-------------------------------- 255 (313)
T ss_dssp -----------EEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTT--------------------------------
T ss_pred -----------hhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCC--------------------------------
Confidence 2233567899999999999655555588999999987
Q ss_pred CCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee
Q 009266 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 382 (538)
......+..|... |.+++| +|+++ +++++.||.|++|++.+++.+....
T Consensus 256 ------~~~~~~~~~~~~~--i~~~~~-~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 256 ------GSLKQVITLPAIS--IWSVDC-MSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp ------CCEEEEEECSSSC--EEEEEE-CTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred ------CceeEEEeccCce--EEEEEE-ccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 3455677777765 999999 99998 5568889999999999887765543
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.1e-36 Score=290.25 Aligned_cols=283 Identities=13% Similarity=0.102 Sum_probs=223.4
Q ss_pred ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC-CCCEEEEecCCCeEEEEE
Q 009266 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWD 89 (538)
Q Consensus 11 ~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~t~~~d~~i~iw~ 89 (538)
.++++++.+|.|+||++.....+. .....+.+|.+.|++++|+| ++++||+|+.||.|+||+
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~~~-----------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGRVD-----------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEECC-----------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECccCCCCC-----------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 345568899999999986432210 12456789999999999999 999999999999999999
Q ss_pred CCCC-------ceeeeeccCCCCCeEEEEEeecCCC-ceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCC
Q 009266 90 WKTE-------RVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 90 ~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
+.++ +.+..+ .+|...|.+++|+| ++ .+|++++.||.|++|++.+++.+.......|...|.+++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 187 (402)
T 2aq5_A 111 IPDGGLVLPLREPVITL-EGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187 (402)
T ss_dssp CCTTCCSSCBCSCSEEE-ECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT
T ss_pred ccCCCCccccCCceEEe-cCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC
Confidence 9987 444555 78999999999999 87 6999999999999999998877665211789999999999999
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeee-eecccCCCCCcceeeeeEEEEEcCCCCcEEEEE---eCCCeEEEEEcCCcc
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA---GSDEYTRLYDIRKYK 237 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~v~iwd~~~~~ 237 (538)
+ .+|++++.|+.|++||+++++.+..+ ..+. ...+.+++|+|+ +.+|++| +.++.|++|++++.+
T Consensus 188 ~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 188 G-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHE---------GTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp S-SCEEEEETTSEEEEEETTTTEEEEEEECSSC---------SSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCS
T ss_pred C-CEEEEEecCCcEEEEeCCCCceeeeeccCCC---------CCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCcccc
Confidence 8 68999999999999999999887776 3322 113789999997 7899998 799999999998864
Q ss_pred ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEE-Ec-CCeEEEeeccCCCCCCCCCCCCccccccccccCCC
Q 009266 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS-YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (538)
.. .......+...+.+++|+|++++|++ ++ ++.|++|++.++.
T Consensus 257 ~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~---------------------- 301 (402)
T 2aq5_A 257 EP-------------LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA---------------------- 301 (402)
T ss_dssp SC-------------SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST----------------------
T ss_pred CC-------------ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC----------------------
Confidence 20 01112234667999999999998864 54 6799999998741
Q ss_pred CccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcce
Q 009266 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~ 377 (538)
..+..+..+.....+.+++| +|++.++++ .++.+++|++.++++
T Consensus 302 ---------------~~~~~l~~~~~~~~v~~~~~-sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 302 ---------------PFLHYLSMFSSKESQRGMGY-MPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp ---------------TCEEEEEEECCSSCCSEEEE-CCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ---------------cceEeecccccCCcccceEE-eccccccee--cceeEEEEEcCCCcE
Confidence 12345555543334999999 999998875 456999999987654
No 99
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2e-36 Score=285.10 Aligned_cols=290 Identities=14% Similarity=0.109 Sum_probs=213.6
Q ss_pred CCCCCCceEEeeccCC-------ceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEE
Q 009266 5 SNNNNNKRARTSVDKA-------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~-------~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 77 (538)
-|+|++++|++|+.+. .|+||++..+..... ..........|.+|...|.+++++ +..++
T Consensus 21 ~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~ 87 (365)
T 4h5i_A 21 KFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK-----------EQFHILSEFALEDNDDSPTAIDAS--KGIIL 87 (365)
T ss_dssp EEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH-----------HHEEEEEEEECCTTSCCCCEEEEE--TTEEE
T ss_pred EEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee-----------eeeeeeeEEEccCCCCceEEEEeC--CCEEE
Confidence 3578999999987543 599999986543211 001112234578899999998876 45666
Q ss_pred Ee-----------cCCCeEEEEECCCCceeeee--------ccCCCCCeEEEEEeecCCCceEEEEe--CCCcEEEeecc
Q 009266 78 SG-----------SDDRRVILWDWKTERVKLSF--------HSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQIL 136 (538)
Q Consensus 78 t~-----------~~d~~i~iw~~~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~~~l~s~~--~dg~v~vwd~~ 136 (538)
+| +.++.|++|++.+......+ ...+...+.+++|+| +|++|++++ .|++|+||++.
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp--Dg~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR--EGTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT--TSSCEEEEESCSSCEEEEEETT
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC--CCCEEEEEECCCCCEEEEeECC
Confidence 54 45788999998765432221 123445689999999 999987554 68999999999
Q ss_pred cCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
+++.+.. + .|...|.+|+|+|++ ++|++++. +.+++|+..++..+....... +...|.+++|+|+ +
T Consensus 166 ~~~~~~~--~-~~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~v~fspd-g 231 (365)
T 4h5i_A 166 DLTEKFE--I-ETRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARKTDFD--------KNWSLSKINFIAD-D 231 (365)
T ss_dssp TTEEEEE--E-ECSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEECCCC--------TTEEEEEEEEEET-T
T ss_pred CCcEEEE--e-CCCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeeeecCC--------CCCCEEEEEEcCC-C
Confidence 8877654 4 377889999999999 68888875 457777777776654332211 4457999999998 7
Q ss_pred cEEEEEeCCC----eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccC
Q 009266 217 NLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (538)
Q Consensus 217 ~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (538)
.++++++.++ .+++|++....... ........|...|++++|+|+|++||+++ ++.|+|||+.+
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSV-----------LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEE-----------EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred CEEEEEecCCcceeEEeecccccceecc-----------eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence 8999998877 68889887653210 01122345677899999999999999998 56999999987
Q ss_pred CCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCce-eeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV-YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
.++++. +.+|... |++|+| +|+|++||+||.|++|+||
T Consensus 301 --------------------------------------~~~~~~~~~gH~~~--V~~v~f-Spdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 301 --------------------------------------LSMSKIFKQAHSFA--ITEVTI-SPDSTYVASVSAANTIHII 339 (365)
T ss_dssp --------------------------------------TEEEEEETTSSSSC--EEEEEE-CTTSCEEEEEETTSEEEEE
T ss_pred --------------------------------------CcEEEEecCcccCC--EEEEEE-CCCCCEEEEEeCCCeEEEE
Confidence 344454 4688887 999999 9999999999999999999
Q ss_pred eccCc
Q 009266 371 KKKGG 375 (538)
Q Consensus 371 d~~~~ 375 (538)
++...
T Consensus 340 ~ip~~ 344 (365)
T 4h5i_A 340 KLPLN 344 (365)
T ss_dssp ECCTT
T ss_pred EcCCC
Confidence 99643
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.4e-36 Score=275.20 Aligned_cols=198 Identities=19% Similarity=0.245 Sum_probs=163.1
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC--CCCEEEEecCCC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDR 83 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~t~~~d~ 83 (538)
|+|++++||+|+.|++|+||++.+++.. ++..+.+|.+.|++++|+| ++++||+|+.|+
T Consensus 21 ~s~~g~~lasgs~D~~v~lwd~~~~~~~-------------------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 21 MDYYGTRLATCSSDRSVKIFDVRNGGQI-------------------LIADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp ECGGGCEEEEEETTTEEEEEEEETTEEE-------------------EEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred EcCCCCEEEEEeCCCeEEEEEecCCCcE-------------------EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 5678999999999999999999876531 2467889999999999986 489999999999
Q ss_pred eEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCC--CceEEEEeCCCcEEEeecccCce-eeeeeccccCCCcEEEEE
Q 009266 84 RVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 84 ~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~v~~~~~ 158 (538)
+|+||++.+++ .+..+ .+|...|++++|+| + +.+|++++.|++|++|++..... .....+.+|...|.+++|
T Consensus 82 ~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p--~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEH-AGHDSSVNSVCWAP--HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp CEEEECCSSSCCCEEEEE-CCCSSCCCEEEECC--TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred EEEEEECCCCcceEEEEc-cCCCCceEEEEECC--CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 99999998874 33444 78999999999999 6 88999999999999999987632 223447789999999999
Q ss_pred cCCC----------------CcEEEEEcCCCcEEEEecCCCC---eeeeeeecccCCCCCcceeeeeEEEEEcCCC---C
Q 009266 159 EPGS----------------PHVFYTCGEDGLVQHFDLRTGA---ATELFTCRPIDDRRNYMTVVNLNAIAIDPRN---A 216 (538)
Q Consensus 159 ~~~~----------------~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~ 216 (538)
+|+. ..+|++|+.|++|++|+++... ....+.. |...|.+++|+|++ +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~----------h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA----------HSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC----------CSSCEEEEECCCCSSCSC
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc----------CCCceEEEEecCCCCCCC
Confidence 9973 1579999999999999997653 2222322 44479999999973 2
Q ss_pred cEEEEEeCCCeEEEEEcCC
Q 009266 217 NLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~ 235 (538)
.+|++++.|++|++|++..
T Consensus 229 ~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 229 STIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CEEEEEETTCEEEEEECSS
T ss_pred ceEEEEcCCCeEEEEEccC
Confidence 7899999999999999875
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=285.02 Aligned_cols=328 Identities=10% Similarity=0.152 Sum_probs=221.1
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc------------CcEEEEEEcCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR------------GCVNTVSFNTD 72 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~s~~ 72 (538)
-++|++++||+|+.||.|+||++.+++.... .....+++...+.+|. ..|++++|+|+
T Consensus 35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 35 EFNHSGELLATGDKGGRVVIFQQEQENKIQS----------HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECC-----C----------CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred EECCCCCEEEEEcCCCeEEEEEecCCCCCCc----------ccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 3567999999999999999999997763110 0011234567788998 88999999999
Q ss_pred C--CEEEEecCCCeEEEEECCCCcee---------------------------------------eeeccCCCCCeEEEE
Q 009266 73 G--DILISGSDDRRVILWDWKTERVK---------------------------------------LSFHSGHNDNVFQAK 111 (538)
Q Consensus 73 g--~~l~t~~~d~~i~iw~~~~~~~~---------------------------------------~~~~~~~~~~v~~l~ 111 (538)
+ .+|++++.|++|+||++.++... ..+..+|...|++++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 89999999999999998764431 133468999999999
Q ss_pred EeecCCCceEEEEeCCCcEEEeecccCce-eeee-----eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe
Q 009266 112 IMPFTDDRSIVTCAADGQVRHAQILERGG-VETK-----LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA 185 (538)
Q Consensus 112 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 185 (538)
|+| ++.+|++| .|+.|++|++.+... .... .+.+|...|++++|+|+++.+|++++.||.|++||+++++.
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 999 99999998 799999999984332 2211 36689999999999999867999999999999999999886
Q ss_pred ----eeeeeecccCCCC--CcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ccccCCCCCCCCCcccCCCCccC
Q 009266 186 ----TELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIG 258 (538)
Q Consensus 186 ----~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
...+..+...... ...+...|.+++|+|+ +.+|++++. +.|++|++++ ++.... ..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~---------------~~ 324 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVET---------------YQ 324 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCC---------------EE
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccce---------------ee
Confidence 4555433210000 0001127999999997 789999999 9999999987 442221 11
Q ss_pred CCcc---------------ceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 009266 259 DEQV---------------GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (538)
Q Consensus 259 ~~~~---------------~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (538)
.|.. .+..++|+|++++|++++ ++.|++|++.++..... .......... ... ....+...
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~--~~~-~~~~~~~~ 400 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPR--TVL-KPRKVCAS 400 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTT--CBC-CCCCEECS
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccc--ccc-CCcccccc
Confidence 1111 134599999999999988 66999999988653211 0000000000 000 00000000
Q ss_pred CCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
... ...............|..++| +|++++||+++.++ +++|..
T Consensus 401 ~~~----~~~~~~~~~~~~~~~i~~~~~-~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 401 GKR----KKDEISVDSLDFNKKILHTAW-HPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp SCC----CTTCEEGGGCCTTSCCCEEEE-CSSSSEEEEECSSC-EEEEEC
T ss_pred CCc----ccccccccccccCCceeEEEE-CCCCCEEEEEecce-eeeecc
Confidence 000 000000011111123889999 99999999998776 777764
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.6e-35 Score=283.74 Aligned_cols=292 Identities=17% Similarity=0.259 Sum_probs=223.4
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
+++++|++|+.||+|+||++.+++.+ ..+.+|.+.|++++| ++++|++|+.||.|++
T Consensus 141 ~d~~~l~~g~~dg~i~iwd~~~~~~~---------------------~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v 197 (435)
T 1p22_A 141 YDDQKIVSGLRDNTIKIWDKNTLECK---------------------RILTGHTGSVLCLQY--DERVIITGSSDSTVRV 197 (435)
T ss_dssp CCSSEEEEEESSSCEEEEESSSCCEE---------------------EEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred ECCCEEEEEeCCCeEEEEeCCCCeEE---------------------EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence 47889999999999999999988764 668899999999999 6889999999999999
Q ss_pred EECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee-eeeccccCCCcEEEEEcCCCCcEE
Q 009266 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
|++.+++.+..+ .+|...|.+++|++ .+|++|+.+|.|++|++.++.... ...+.+|...|.+++| ++ .+|
T Consensus 198 wd~~~~~~~~~~-~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l 269 (435)
T 1p22_A 198 WDVNTGEMLNTL-IHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-KYI 269 (435)
T ss_dssp EESSSCCEEEEE-CCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-TEE
T ss_pred EECCCCcEEEEE-cCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-CEE
Confidence 999999988877 78999999999965 599999999999999998876542 2347789999999999 44 689
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 246 (538)
++|+.||.|++||+++++.+..+..+ ...|.+++|+ +.+|++|+.||.|++||+++++..
T Consensus 270 ~s~~~dg~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~------- 329 (435)
T 1p22_A 270 VSASGDRTIKVWNTSTCEFVRTLNGH----------KRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACL------- 329 (435)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECC----------SSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEE-------
T ss_pred EEEeCCCeEEEEECCcCcEEEEEcCC----------CCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEE-------
Confidence 99999999999999999988877653 3378899985 469999999999999999987532
Q ss_pred CCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.....|...|.+++| ++.+|++++ ++.|++|++.++.......
T Consensus 330 --------~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------------------------- 373 (435)
T 1p22_A 330 --------RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA-------------------------- 373 (435)
T ss_dssp --------EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT--------------------------
T ss_pred --------EEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccc--------------------------
Confidence 233456788999999 678888887 6799999997643211100
Q ss_pred CCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecC
Q 009266 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (538)
.......+.+|... |.+++| ++++|++|+.||.|++|++.+........ ...++.++.|.+
T Consensus 374 ---~~~~~~~~~~h~~~--v~~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~ 434 (435)
T 1p22_A 374 ---GTLCLRTLVEHSGR--VFRLQF---DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYIS 434 (435)
T ss_dssp ---TTTEEEEECCCSSC--CCCEEE---CSSCEEECCSSSEEEEEC------------------------
T ss_pred ---cchheeeccCCCCC--eEEEEe---CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeeec
Confidence 01245667788876 888887 67899999999999999998876554433 233455555543
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1e-35 Score=285.47 Aligned_cols=292 Identities=14% Similarity=0.114 Sum_probs=226.2
Q ss_pred CcEEEEEEcCCCCEE-EEecCCCeEEEEECCCCce---eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 62 GCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l-~t~~~d~~i~iw~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
.....++++|+...+ ++++.+|.|+||++..... ....+.+|...|++++|+|. ++.+|++|+.||.|+||++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT-CTTEEEEEETTSEEEEEECCT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccC
Confidence 345568899877544 4578899999999865432 12233789999999999983 578999999999999999988
Q ss_pred Cce-----eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 138 RGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 138 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
+.. .....+.+|...|.+++|+|+++++|++++.|+.|++||+++++.+..+.... +...|.+++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~v~~~~~~ 185 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV--------HPDTIYSVDWS 185 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT--------CCSCEEEEEEC
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC--------CCCceEEEEEC
Confidence 742 22334778999999999999986799999999999999999998877662110 34479999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCcc-ceEEEEEcCCCCEEEEE---c-CCeEEEe
Q 009266 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAFSDQSELLVSY---N-DEFIYLF 287 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~---~-~~~i~~~ 287 (538)
|+ +.+|++++.||.|++||+++++... .+...|.. .+.+++|+|++++|+++ + ++.|++|
T Consensus 186 ~~-~~~l~~~~~d~~i~iwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw 250 (402)
T 2aq5_A 186 RD-GALICTSCRDKRVRVIEPRKGTVVA--------------EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250 (402)
T ss_dssp TT-SSCEEEEETTSEEEEEETTTTEEEE--------------EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred CC-CCEEEEEecCCcEEEEeCCCCceee--------------eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence 97 7899999999999999999876321 22122333 48999999999999998 4 6699999
Q ss_pred eccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee-ccccceeeeEEEEecCCCcEEE-EeccCC
Q 009266 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVV-SGSDCG 365 (538)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~s~~~~~l~-~gs~dg 365 (538)
++.+... ...... .+... +.+++| +|++++|+ +|+.||
T Consensus 251 d~~~~~~-------------------------------------~~~~~~~~~~~~--v~~~~~-s~~~~~l~~~g~~dg 290 (402)
T 2aq5_A 251 DTKHLEE-------------------------------------PLSLQELDTSSG--VLLPFF-DPDTNIVYLCGKGDS 290 (402)
T ss_dssp ETTBCSS-------------------------------------CSEEEECCCCSS--CEEEEE-ETTTTEEEEEETTCS
T ss_pred cCccccC-------------------------------------CceEEeccCCCc--eeEEEE-cCCCCEEEEEEcCCC
Confidence 9986421 122222 23333 888998 99999986 566799
Q ss_pred eEEEeeccCcce-eEEeec--CcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 366 RIFIWKKKGGEL-IRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 366 ~i~iwd~~~~~~-~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
.|++|++.+++. +..+.. |...|.+++|+|++.++++ .++.+++|++.++.+
T Consensus 291 ~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 291 SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred eEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 999999999885 555554 4589999999999998875 466999999987643
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1e-33 Score=270.71 Aligned_cols=311 Identities=11% Similarity=0.093 Sum_probs=240.5
Q ss_pred ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEE-EEecCCCeEEEEE
Q 009266 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWD 89 (538)
Q Consensus 11 ~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~t~~~d~~i~iw~ 89 (538)
.++++++.++.|++|++.+++++ +.+..|. .+.+++|+|+|++| ++++.++.|++|+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~---------------------~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d 60 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVT---------------------ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIID 60 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE---------------------EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEE---------------------EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEE
Confidence 46888999999999999988775 4556564 48999999999976 6777899999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (538)
+.+++.+..+ ..+ ..+.+++|+| ++++|++++ .++.|++|++.+++.+.. +. +...+.+++|+|++..++++
T Consensus 61 ~~~~~~~~~~-~~~-~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~--~~-~~~~~~~~~~s~dg~~l~~~ 133 (391)
T 1l0q_A 61 TATNNVIATV-PAG-SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGT--VK-TGKSPLGLALSPDGKKLYVT 133 (391)
T ss_dssp TTTTEEEEEE-ECS-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEE--EE-CSSSEEEEEECTTSSEEEEE
T ss_pred CCCCeEEEEE-ECC-CCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEE--Ee-CCCCcceEEECCCCCEEEEE
Confidence 9999987776 333 3899999999 999886554 679999999998876654 33 34568999999999555588
Q ss_pred EcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCC
Q 009266 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (538)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (538)
++.++.|++||+.+++.+..+..+ ..+.+++|+|++..++++++.++.|++||+++++....
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------- 195 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-----------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------- 195 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-----------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-------
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-----------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE-------
Confidence 999999999999999887776632 24689999998444457888899999999988753211
Q ss_pred cccCCCCccCCCccceEEEEEcCCCCEEEEEc----CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
. .+...+.+++|+|++++|++++ ++.|++|++.++
T Consensus 196 --------~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-------------------------------- 234 (391)
T 1l0q_A 196 --------V-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-------------------------------- 234 (391)
T ss_dssp --------E-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--------------------------------
T ss_pred --------E-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC--------------------------------
Confidence 1 1245789999999999887775 468999998763
Q ss_pred CCCCcccCCceeeccccceeeeEEEEecCCCcEE-EEeccCCeEEEeeccCcceeEEeecCcceee---EEeecC-----
Q 009266 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV-VSGSDCGRIFIWKKKGGELIRVIEADRHVVN---CIEPHP----- 395 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l-~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~---~~~~s~----- 395 (538)
..+..+..+.. +.+++| +|++++| ++++.++.|++|++.+++++..+..|..+.. .+.+.|
T Consensus 235 ------~~~~~~~~~~~---~~~~~~-s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (391)
T 1l0q_A 235 ------KITARIPVGPD---PAGIAV-TPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY 304 (391)
T ss_dssp ------EEEEEEECCSS---EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC
T ss_pred ------eEEEEEecCCC---ccEEEE-ccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccc
Confidence 33445555543 678888 9999977 6778899999999999999998887765431 122222
Q ss_pred -------CC----------CeEEEeecCCceEEecCCCCcc
Q 009266 396 -------HS----------TVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 396 -------~~----------~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+. -.+...+.+..+++|++..+..
T Consensus 305 ~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 305 PSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp CBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred cccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 11 2466677789999999987654
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.4e-34 Score=279.46 Aligned_cols=253 Identities=15% Similarity=0.282 Sum_probs=208.8
Q ss_pred EEcCCcCcEEEEEEcCC-CCEEEEecCCCeEEEEECCC----------CceeeeeccCCCCCeEEEEEeecCCCc-eEEE
Q 009266 56 KLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT----------ERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVT 123 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~----------~~~~~~~~~~~~~~v~~l~~~~~~~~~-~l~s 123 (538)
.+.+|.+.|++++|+|+ +.+||+++.+|.|+||++.+ ...+..+ .+|...|++|+|+| ++. +|++
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~~l~s 199 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNP--NLNGYLLS 199 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECT--TSTTEEEE
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCC--CCCCeEEE
Confidence 45569999999999997 78999999999999999976 4555555 78999999999999 877 9999
Q ss_pred EeCCCcEEEeecccCce-----eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC---eeeeeeecccC
Q 009266 124 CAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA---ATELFTCRPID 195 (538)
Q Consensus 124 ~~~dg~v~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~ 195 (538)
|+.+|.|++|++.++.. .....+.+|...|.+++|+|.+..+|++++.++.|++||++++. .+..+..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~---- 275 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA---- 275 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC----
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec----
Confidence 99999999999987332 11234668999999999999666899999999999999999873 4444432
Q ss_pred CCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCE
Q 009266 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (538)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 275 (538)
+...|++++|+|++..+|++|+.+|.|++|++++..
T Consensus 276 ------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------------------------------- 311 (430)
T 2xyi_A 276 ------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------------------------------------- 311 (430)
T ss_dssp ------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------------------------------------
T ss_pred ------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------------------------------------
Confidence 344799999999855689999999999999988632
Q ss_pred EEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCC
Q 009266 276 LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (538)
Q Consensus 276 l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 355 (538)
..+..+.+|... |.+++| +|++
T Consensus 312 -------------------------------------------------------~~~~~~~~h~~~--v~~i~~-sp~~ 333 (430)
T 2xyi_A 312 -------------------------------------------------------LKLHSFESHKDE--IFQVQW-SPHN 333 (430)
T ss_dssp -------------------------------------------------------SCSEEEECCSSC--EEEEEE-CSSC
T ss_pred -------------------------------------------------------CCeEEeecCCCC--EEEEEE-CCCC
Confidence 112344455554 889998 9988
Q ss_pred c-EEEEeccCCeEEEeeccC--------------cceeEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCCC
Q 009266 356 E-YVVSGSDCGRIFIWKKKG--------------GELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA 417 (538)
Q Consensus 356 ~-~l~~gs~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~~ 417 (538)
+ +|++++.||.|+||++.. .+++..+.+|...|++++|+|+++ +|++++.||.|+||++...
T Consensus 334 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 5 689999999999999977 366777888999999999999999 8999999999999998754
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.2e-34 Score=268.19 Aligned_cols=278 Identities=15% Similarity=0.118 Sum_probs=223.0
Q ss_pred eccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce-eeeeeccccCCCcEEEEEcCCCCc-EEEEEcCCCcEE
Q 009266 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPH-VFYTCGEDGLVQ 176 (538)
Q Consensus 99 ~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~ 176 (538)
+..+|...|++++|+| ++.+|++++.++.|++|++.++.. .....+..|...|.+++|+|++ . +|++++.+|.|+
T Consensus 6 ~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEIL 82 (342)
T ss_dssp CSSCCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEE
T ss_pred cccCCCCcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEE
Confidence 3468999999999999 999999999999999999987761 1122355899999999999998 7 899999999999
Q ss_pred EEec-CCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC---------ccccCCCCCCC
Q 009266 177 HFDL-RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK---------YKWDGSTDFGQ 246 (538)
Q Consensus 177 iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~ 246 (538)
+|++ .+++. ..+... .+...|.+++|+| +.+|++++.++.|++|++++ .+.
T Consensus 83 ~wd~~~~~~~-~~~~~~--------~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------- 143 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNN--------EANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-------- 143 (342)
T ss_dssp EECSSSSSSE-EECBSC--------CCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESC--------
T ss_pred EEEeccCCce-Eecccc--------CCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCe--------
Confidence 9999 87755 233220 0334799999999 58999999999999999987 432
Q ss_pred CCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccC-CCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM-GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
..... +...|.+++|+|++ +++++.++.|++|++.+ ...
T Consensus 144 -------~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~------------------------------- 183 (342)
T 1yfq_A 144 -------SNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD------------------------------- 183 (342)
T ss_dssp -------SSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC-------------------------------
T ss_pred -------eeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc-------------------------------
Confidence 11122 57789999999988 44444477999999876 321
Q ss_pred CCCcccCCceeeccccceeeeEEEEecC-CCcEEEEeccCCeEEEeeccCc------ceeEEeecCcc---------eee
Q 009266 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGG------ELIRVIEADRH---------VVN 389 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~~gs~dg~i~iwd~~~~------~~~~~~~~h~~---------~v~ 389 (538)
........|... +.+++| +| ++++|++++.+|.|++|++... +.+..+..|.. .|+
T Consensus 184 -----~~~~~~~~~~~~--i~~i~~-~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 184 -----NGTIEESGLKYQ--IRDVAL-LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp -----CCEEEECSCSSC--EEEEEE-CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred -----cceeeecCCCCc--eeEEEE-CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence 011222334444 899999 99 9999999999999999999887 78888888865 999
Q ss_pred EEeecCCCCeEEEeecCCceEEecCCCCcc-cccCcc-ceeeeecccCc-eeeeccCCCC
Q 009266 390 CIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTN-IEQVLIPDHIR-WFALGDDDDG 446 (538)
Q Consensus 390 ~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~-~~~~~~~~~~~-~l~s~~~d~~ 446 (538)
+++|+|++++|++++.||.|++|++.++++ ..+..| ...+..+.+++ +|++++.|+.
T Consensus 256 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTH
T ss_pred EEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCc
Confidence 999999999999999999999999998765 556677 88887777666 9999999987
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-35 Score=302.78 Aligned_cols=259 Identities=16% Similarity=0.276 Sum_probs=208.3
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECC--CCceeeeeccCCCCCeEEEEEeecCC--CceEEEEeCCCc
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQ 129 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~--~~~l~s~~~dg~ 129 (538)
+..+.+|.+.|++++|+|++++|++|+.||.|+||++. +++.+..+ .+|..+|++++|+| + +.+|++|+.||.
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~--~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAH--PKFGTILASCSYDGK 78 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--TTSCSEEEEEETTSC
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecC--CCCCCEEEEEeCCCe
Confidence 35688999999999999999999999999999999997 44455555 79999999999998 6 999999999999
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCC--CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
|++|++.++.......+..|...|++++|+|+ + .+|++|+.+|.|++|+++++.......... +...|.
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~--------~~~~v~ 149 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVN 149 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEEC--------CSSCEE
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeec--------CCCceE
Confidence 99999998875555568889999999999998 7 789999999999999999875443332211 444799
Q ss_pred EEEEcCC------------CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCE
Q 009266 208 AIAIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (538)
Q Consensus 208 ~~~~~~~------------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 275 (538)
+++|+|. ++.+|++|+.||.|++|+++++.. .
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-------------------------~----------- 193 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------------------------T----------- 193 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-------------------------E-----------
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-------------------------c-----------
Confidence 9999994 256777777777777777765320 0
Q ss_pred EEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCC-
Q 009266 276 LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK- 354 (538)
Q Consensus 276 l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~- 354 (538)
......+.+|... |.+++| +|+
T Consensus 194 ------------------------------------------------------~~~~~~~~~h~~~--V~~l~~-sp~~ 216 (753)
T 3jro_A 194 ------------------------------------------------------YVLESTLEGHSDW--VRDVAW-SPTV 216 (753)
T ss_dssp ------------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCCC
T ss_pred ------------------------------------------------------ceeeeeecCCCCc--EEEEEe-ccCC
Confidence 1122345566665 899999 999
Q ss_pred --CcEEEEeccCCeEEEeeccCcc-----eeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 355 --CEYVVSGSDCGRIFIWKKKGGE-----LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 355 --~~~l~~gs~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
+++|++|+.||.|++|++.+++ .+.....|...|++++|+|++++|++++.||.|+||++...
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999999999999998874 33344568889999999999999999999999999999854
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.5e-34 Score=270.49 Aligned_cols=294 Identities=14% Similarity=0.164 Sum_probs=210.3
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC--CCCEEEEecCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDD 82 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~t~~~d 82 (538)
-++|++++|++|+.||+|+||++.++... +++...+.+|...|++++|+| ++++|++|+.|
T Consensus 18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 18 VYDFYGRHVATCSSDQHIKVFKLDKDTSN-----------------WELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECSSSCC-----------------EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCCCc-----------------ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 35678999999999999999999866432 233567889999999999999 69999999999
Q ss_pred CeEEEEECCCCc---------eeeeeccCCCCCeEEEEEeecCC--CceEEEEeCCCcEEEeecccCceeeeee------
Q 009266 83 RRVILWDWKTER---------VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKL------ 145 (538)
Q Consensus 83 ~~i~iw~~~~~~---------~~~~~~~~~~~~v~~l~~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~------ 145 (538)
|.|++|++.++. .+..+ ..|...|.+++|+| + +.+|++++.+|.|++|++.+++.+....
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAP--AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred CeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcC--CCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 999999998873 34444 78999999999999 8 9999999999999999998776543211
Q ss_pred -----ccccCCCcEEEEEcCC--CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC--
Q 009266 146 -----LGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA-- 216 (538)
Q Consensus 146 -----~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 216 (538)
...|...+.+++|+|+ .+.+|++++.++.+.+|....++........ + +...|.+++|+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~--h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP------G--HKSLIRSISWAPSIGRW 229 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC------C--CCSCEEEEEECCCSSCS
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC------C--CCcceeEEEECCCCCCc
Confidence 1267889999999997 2378999999999988888777653222211 1 445899999999832
Q ss_pred -cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-----CeEEEeecc
Q 009266 217 -NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----EFIYLFTQD 290 (538)
Q Consensus 217 -~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----~~i~~~d~~ 290 (538)
.+|++++.||.|++|+++....... ...+...+....+.+....++.+.. ..+.+|+..
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLA---------------SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL 294 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC------------------------------------------------------CCSE
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCccc---------------cCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence 7999999999999999987642111 1111222333333444333333321 123333322
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
. ...+..+.+|... |++++| +|++++|++|+.||.|+||
T Consensus 295 ~--------------------------------------~~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 295 Q--------------------------------------VELLSEHDDHNGE--VWSVSW-NLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp E--------------------------------------EEEEEEECTTSSC--EEEEEE-CSSSCCEEEEETTSCEEEE
T ss_pred c--------------------------------------ccEEEEEeccccc--EEEEEE-cCCCCEEEEecCCCcEEEE
Confidence 2 4456677888876 999999 9999999999999999999
Q ss_pred eccCcceeEEee
Q 009266 371 KKKGGELIRVIE 382 (538)
Q Consensus 371 d~~~~~~~~~~~ 382 (538)
++.+++.+..+.
T Consensus 334 ~~~~~~~~~~~~ 345 (351)
T 3f3f_A 334 KATYSNEFKCMS 345 (351)
T ss_dssp EECTTSCEEEEE
T ss_pred ecCcCcchhhee
Confidence 999886665443
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-35 Score=279.10 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=210.3
Q ss_pred cCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 58 ~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
+.-...|.+++|+|||+++||++.|++|+ +...++ .+ .+|...|++++|+| +| .++.+.+|+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l-~gh~~~v~~V~FsP--dg-------~~~~~~~~~--- 73 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DI-NCNSKNLFHVKEFP--LE-------FENKLDFEL--- 73 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CC-SSBGGGTEEEEEEC--CC-------CCCTTTTSC---
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---ee-cCCCccEEEEEECC--CC-------CcceEEEEe---
Confidence 34568899999999999999999999999 654443 33 68999999999999 87 445555554
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
++......+ .|...|.+++|+|+| .+|++++.+|.|++|+..+ ++..+. +.. +.....+.+++|+|+ ++
T Consensus 74 ~~~~~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~-----~~~~~sv~svafSPD-G~ 142 (588)
T 2j04_A 74 AQQNGLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKG-----NLSSRTYHCFEWNPI-ES 142 (588)
T ss_dssp CCSSCSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CSS-----CSTTTCEEEEEECSS-SS
T ss_pred CCCceEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CCC-----ccccccEEEEEEcCC-CC
Confidence 333332223 458899999999999 7899999999999999544 333333 221 001225899999998 89
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP 297 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~ 297 (538)
+||+|+.||+|+||++..+.+.... + ...........+|...|.+++|+|+| +++++.++.|++|++..+..
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~-~---i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~--- 214 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPE-F---YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH--- 214 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCC-C---EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS---
T ss_pred EEEEEcCCCEEEEEECCCCcccccc-c---eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc---
Confidence 9999999999999999886421000 0 00000011124567899999999999 66666688999999876421
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCCCcccCCceee-ccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
....+++. +|... |.+++| + |++||+++ +++|++|++.+++
T Consensus 215 --------------------------------~~~~~tL~~~h~~~--V~svaF-s--g~~LASa~-~~tIkLWd~~~~~ 256 (588)
T 2j04_A 215 --------------------------------QPVSRMIQNASRRK--ITDLKI-V--DYKVVLTC-PGYVHKIDLKNYS 256 (588)
T ss_dssp --------------------------------CCCEEEEECCCSSC--CCCEEE-E--TTEEEEEC-SSEEEEEETTTTE
T ss_pred --------------------------------ccceeeecccccCc--EEEEEE-E--CCEEEEEe-CCeEEEEECCCCe
Confidence 01123453 56654 999999 7 68999987 6999999998887
Q ss_pred eeEEeecCcceeeEEee--cCCCCeEEEeecCCceEEecCC
Q 009266 377 LIRVIEADRHVVNCIEP--HPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 377 ~~~~~~~h~~~v~~~~~--s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
......+|...|..++| +|++..|++++.+|+ ++|...
T Consensus 257 ~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 257 ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 74444489999999999 999999999999999 999986
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.2e-34 Score=269.28 Aligned_cols=295 Identities=10% Similarity=0.059 Sum_probs=211.0
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceE-EEEeCCCcEEE
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRH 132 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~v 132 (538)
+..+.+|...|++++|+|+|++||+|+.++ ++||++.+++.+... +...+..+++.+ .++.+ ++++.+++|++
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLH--RTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECT--TSSEEEEECSSTTEEEE
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcC--CCCEEEEEECCccEEEE
Confidence 345688999999999999999999998775 899999887765543 223588888888 77777 56777899999
Q ss_pred eecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC-CeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
||+.+++.+.. +. |...|.+++|+++. ++++ .++.|++|++.++ +.+..+.. +...+++
T Consensus 86 Wd~~~~~~~~~--~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~-------------~~~~~~~ 145 (355)
T 3vu4_A 86 WDDVKKQDVSR--IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR-------------FGGVCEF 145 (355)
T ss_dssp EETTTTEEEEE--EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE-------------EEEEEEE
T ss_pred EECCCCcEEEE--EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc-------------CCceEEE
Confidence 99998887765 33 66789999999854 3443 3689999999988 66555442 2345566
Q ss_pred cCCCCcEEEE--EeCCCeEEEEEcCCccccCCCCCCCCCcccCC-CCccCCCccceEEEEEcCCCCEEEEEc-CCe-EEE
Q 009266 212 DPRNANLFAV--AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP-PNLIGDEQVGITGLAFSDQSELLVSYN-DEF-IYL 286 (538)
Q Consensus 212 ~~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~-i~~ 286 (538)
++ .++++ |+.+|.|++||+++++...............+ ......|...|.+++|+|+|++|++++ +++ |++
T Consensus 146 s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 146 SN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp ET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred Ec---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 66 34444 68999999999987542111000000000011 344567889999999999999999998 567 999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee-c-cccceeeeEEEEecCCCcEEEEeccC
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-G-HRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
|++.+ ...+..+. + |... |.+++| +|++++|++++.|
T Consensus 223 wd~~~--------------------------------------~~~~~~~~~g~h~~~--v~~~~~-s~~~~~l~s~s~d 261 (355)
T 3vu4_A 223 FKTED--------------------------------------GVLVREFRRGLDRAD--VVDMKW-STDGSKLAVVSDK 261 (355)
T ss_dssp EETTT--------------------------------------CCEEEEEECTTCCSC--EEEEEE-CTTSCEEEEEETT
T ss_pred EECCC--------------------------------------CcEEEEEEcCCCCCc--EEEEEE-CCCCCEEEEEECC
Confidence 99987 34556676 4 7765 999999 9999999999999
Q ss_pred CeEEEeeccCccee--EEee---------------------cCcceeeEEeecCCCCeEEEeecCCceEEecCCCCc
Q 009266 365 GRIFIWKKKGGELI--RVIE---------------------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 365 g~i~iwd~~~~~~~--~~~~---------------------~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~ 418 (538)
++|+||++..+... ..+. .+......++|+|++++|++++.||.+++|++..++
T Consensus 262 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 262 WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 99999999765321 1110 111234778999999999999999999999987543
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.7e-34 Score=275.49 Aligned_cols=287 Identities=11% Similarity=0.066 Sum_probs=228.6
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee----ccCCCCCeEEEEEeecCCCceEEEEeCCCc
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~----~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~ 129 (538)
...+..+ ..+.+++|+|++.++++++.++.|++|++.+++.+..+ ..+|...|.+++|+| ++.++++++.++.
T Consensus 116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~ 192 (433)
T 3bws_A 116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANA 192 (433)
T ss_dssp EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTE
T ss_pred EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCE
Confidence 3445544 44669999998888888888999999999998876532 257889999999999 9999999999999
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEE
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (538)
|++|++.+++.+.. +..|...+.+++|+|++..++++++.++.|++||+++++.+..+.. ...+.++
T Consensus 193 v~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~~~~ 259 (433)
T 3bws_A 193 VHVFDLKTLAYKAT--VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----------IGLPRGL 259 (433)
T ss_dssp EEEEETTTCCEEEE--EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----------CSEEEEE
T ss_pred EEEEECCCceEEEE--EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----------CCCceEE
Confidence 99999988777655 6678889999999999965556777899999999999887666542 2258999
Q ss_pred EEcCCCCcEEEEEe--------CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE-EEEc
Q 009266 210 AIDPRNANLFAVAG--------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN 280 (538)
Q Consensus 210 ~~~~~~~~~l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~ 280 (538)
+|+|+ +.+|++++ .+|.|++|++++++.... ..+...+.+++|+|+++.| ++++
T Consensus 260 ~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 260 LLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT----------------IGPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp EECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE----------------EEEEECEEEEEECSSTTEEEEEET
T ss_pred EEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEee----------------ccCCCCcceEEECCCCCEEEEEec
Confidence 99998 67777777 588999999988753211 1234578899999999755 4444
Q ss_pred -CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEE
Q 009266 281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (538)
Q Consensus 281 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~ 359 (538)
++.|++|++.++ .....+. +... +.+++| +|+|++|+
T Consensus 323 ~~~~v~v~d~~~~--------------------------------------~~~~~~~-~~~~--~~~~~~-s~dg~~l~ 360 (433)
T 3bws_A 323 CCSKIEVYDLKEK--------------------------------------KVQKSIP-VFDK--PNTIAL-SPDGKYLY 360 (433)
T ss_dssp TTTEEEEEETTTT--------------------------------------EEEEEEE-CSSS--EEEEEE-CTTSSEEE
T ss_pred CCCEEEEEECCCC--------------------------------------cEEEEec-CCCC--CCeEEE-cCCCCEEE
Confidence 669999998763 2233333 3332 789998 99999988
Q ss_pred Eecc---------------CCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeec-CCceEEecCCC
Q 009266 360 SGSD---------------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI-ESDIKILTPNA 416 (538)
Q Consensus 360 ~gs~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~v~vw~~~~ 416 (538)
+++. ||.|++|++.+++.+..+..+ ..+.+++|+|++++|++++. ++.|++|++..
T Consensus 361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8776 579999999999999888764 57899999999999988875 99999999763
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=8.9e-35 Score=277.10 Aligned_cols=330 Identities=12% Similarity=0.016 Sum_probs=205.6
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceecccc---chh---hcccccceEEe--eeeeEEcCCcCcEEEEEEcCCCCE
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNF---ALR---RRASEDLVLRL--GIYAKLDKHRGCVNTVSFNTDGDI 75 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~---~~~---~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~ 75 (538)
|...|....|++++.++.|++|............ ... ..+.......+ ........|...+....+++++.+
T Consensus 24 ~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (393)
T 4gq1_A 24 CSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLF 103 (393)
T ss_dssp CTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEE
T ss_pred eCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCE
Confidence 3344555556666668899999875332211000 000 00000000011 112223345555555666667889
Q ss_pred EEEecCCCeEEEEECCCCceee----eeccCCCCCeEEEEEeec------CCCceEEEEeCCCcEEEeecccCceeeeee
Q 009266 76 LISGSDDRRVILWDWKTERVKL----SFHSGHNDNVFQAKIMPF------TDDRSIVTCAADGQVRHAQILERGGVETKL 145 (538)
Q Consensus 76 l~t~~~d~~i~iw~~~~~~~~~----~~~~~~~~~v~~l~~~~~------~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 145 (538)
||+|+.|++|+||++.++.... ..+.+|...|++|+|+|. .++++||+|+.|++|+|||+.++..+..
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~-- 181 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA-- 181 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--
Confidence 9999999999999998876532 234799999999999972 1678999999999999999988776654
Q ss_pred ccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCC---------------CCCcceeeeeEEEE
Q 009266 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---------------RRNYMTVVNLNAIA 210 (538)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~ 210 (538)
+..|...|.+++|+|+++++|++++.|++|++||+++++............ .....+...+.++.
T Consensus 182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~ 261 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR 261 (393)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence 667889999999999986789999999999999999887554332211100 00011344688899
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeecc
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (538)
|++.++..|++++.++++++|++..++.. .....+...+..+.+.|+++.+
T Consensus 262 ~~~~dg~~l~s~s~d~~i~vwd~~~~~~~---------------~~l~~~~~~~~~~~~~~~~~~~-------------- 312 (393)
T 4gq1_A 262 WIGSDGSGILAMCKSGAWLRWNLFANNDY---------------NEISDSTMKLGPKNLLPNVQGI-------------- 312 (393)
T ss_dssp EETTTTCEEEEECTTSEEEEEEC----------------------------------CCSCSEEEE--------------
T ss_pred eecCCCCEEEEEeCCCCEEEEECccCCCC---------------ceEeeecCccccEEEccccccc--------------
Confidence 87434789999999999999999876521 1112233344444444443211
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC-CCcEEEEeccCCeEEE
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFI 369 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~~gs~dg~i~i 369 (538)
..+.. ...+.|+.+ ++.++++|+.||+|+|
T Consensus 313 ----------------------------------------------~~~~~---~~~~~~~~~~~~~~~~sgs~Dg~V~l 343 (393)
T 4gq1_A 313 ----------------------------------------------SLFPS---LLGACPHPRYMDYFATAHSQHGLIQL 343 (393)
T ss_dssp ----------------------------------------------CSSCC---SSCCEECSSCTTEEEEEETTTTEEEE
T ss_pred ----------------------------------------------cccCc---ceeEEEccCCCCEEEEEECCCCEEEE
Confidence 11111 222233233 4557788999999999
Q ss_pred eeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
|++.+++++..+..|..+|++++|+|+|++||+++.+| +.+|.+
T Consensus 344 wd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 344 INTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 99999999999999999999999999999999998766 555544
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-34 Score=275.64 Aligned_cols=310 Identities=10% Similarity=0.072 Sum_probs=222.9
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeec-------------------------------------
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFH------------------------------------- 100 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~---~~~~~~------------------------------------- 100 (538)
..+|++++|+|+|++|++++ ++.|++|++.+|+ .+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 35789999999999777664 6799999999988 544431
Q ss_pred ----------------cCCCCCeEEEEEeecCCCceE-EEEeCCCcEEEeecc--cCceeeeeeccccCCCcEEEEEcCC
Q 009266 101 ----------------SGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQIL--ERGGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 101 ----------------~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
.+|...|++++|+| ++++| ++++.+|.|+||++. ++..+.......|...|.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 13444799999999 99996 889999999999998 7766655333367789999999999
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeee----eeeecccCCCCCcceeeeeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~ 235 (538)
+ .+|++++.+|.|++|++.++.... .+.. +...|.+++|+|+ ++.+|++++.|+.|++|++++
T Consensus 161 ~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~----------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 161 D-TTVIIADKFGDVYSIDINSIPEEKFTQEPILG----------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp S-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEE----------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred C-CEEEEEeCCCcEEEEecCCcccccccceeeec----------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 9 689999999999999998877553 3332 3447999999996 258999999999999999987
Q ss_pred ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCC
Q 009266 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (538)
++. .......|...|.+++|+ ++++|++++ ++.|++|++.++.....+...... ...... .
T Consensus 230 ~~~--------------~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~~~~--~ 291 (450)
T 2vdu_B 230 CFI--------------VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI-KPYLND--Q 291 (450)
T ss_dssp TTC--------------EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH-GGGCCT--T
T ss_pred Cce--------------eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh-hhhhhh--c
Confidence 652 122244578899999999 999999988 669999999876433222100000 000000 0
Q ss_pred CCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-cCCeEEEeec--cCc---ceeEEeecCccee
Q 009266 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KGG---ELIRVIEADRHVV 388 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-~dg~i~iwd~--~~~---~~~~~~~~h~~~v 388 (538)
... ......-........+.+++| +|++++|++++ .++.|+||++ .++ +.+..+..| ..|
T Consensus 292 ---------~~~---~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v 357 (450)
T 2vdu_B 292 ---------HLA---PPRFQNENNDIIEFAVSKIIK-SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV 357 (450)
T ss_dssp ---------SBC-------------CBCCCEEEEEE-CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred ---------ccc---cccccccccccceEEEEEEEE-eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence 000 000000000011223889998 99999999998 8999999999 565 677788888 789
Q ss_pred eEEeecCCCCeEEEeec------CCceEEecCCC
Q 009266 389 NCIEPHPHSTVLASSGI------ESDIKILTPNA 416 (538)
Q Consensus 389 ~~~~~s~~~~~l~s~~~------dg~v~vw~~~~ 416 (538)
.+++|+|++.++++++. +..|.||.+..
T Consensus 358 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 358 ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999995444444443 45688887653
No 114
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=274.90 Aligned_cols=248 Identities=18% Similarity=0.207 Sum_probs=201.2
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC--CCEEEEecCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISGSDD 82 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~t~~~d 82 (538)
.++|++++|++|+.||.|+||++..+.. +....+.+|...|++++|+|+ +++|++|+.|
T Consensus 18 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 18 VLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEE-------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EEcCCCCEEEEEECCCcEEEEecCCCcc-------------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 3568899999999999999999983322 234678899999999999987 9999999999
Q ss_pred CeEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCC--CceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 83 RRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 83 ~~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
|.|+||++.+++ .+..+ ..|...|.+++|+| + +.+|++++.++.|++|++.+........+..|...|.+++|
T Consensus 79 g~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAP--HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 155 (379)
T ss_dssp SCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE
T ss_pred CEEEEEEcCCCceeEeeee-cCCCcceEEEEeCC--CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEE
Confidence 999999999887 44444 78999999999999 7 89999999999999999998866555567789999999999
Q ss_pred cC-------------CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCC--CcEEEEEe
Q 009266 159 EP-------------GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAVAG 223 (538)
Q Consensus 159 ~~-------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~ 223 (538)
+| ++ .+|++++.++.|++|+++++.....+.... .+ +...|.+++|+|++ +.+|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~--h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 156 APATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTL----EG--HSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEE----CC--CSSCEEEEEECCCCSSSEEEEEEE
T ss_pred cCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEE----ec--ccCcEeEEEECCCCCCCCeEEEEe
Confidence 99 46 789999999999999998776442221100 11 34579999999974 68999999
Q ss_pred CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccC
Q 009266 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (538)
.||.|++|+++.+..... ........+...|.+++|+|++++|++++ ++.|++|++..
T Consensus 229 ~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCEEEEEESSTTSCCE----------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCEEEEEeCCCCCccce----------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999998631100 01112233677899999999999999877 66999999875
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-34 Score=268.06 Aligned_cols=276 Identities=11% Similarity=0.065 Sum_probs=210.9
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc---------cC
Q 009266 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL---------ER 138 (538)
Q Consensus 68 ~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~---------~~ 138 (538)
.+.+++.+|++|+.||+|++|++.+++.+..+. ...|.+++|+| . +++++.|++|++|+.. ++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHP--A---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCC--S---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCC--c---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 445678899999999999999999999877773 46788899998 5 9999999999999765 33
Q ss_pred ceeeeeeccccCCCcEEEEEcC--CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 139 GGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
..+.. ....|...|.+++|+| ++ .+|++++.||+|++||+++++.......+ +...+.+++|+|+ +
T Consensus 115 ~~~~~-~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------~~~~i~~~~~~pd-g 182 (343)
T 3lrv_A 115 KVLRE-IEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAK---------SDVEYSSGVLHKD-S 182 (343)
T ss_dssp CEEEE-EECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCC---------SSCCCCEEEECTT-S
T ss_pred ceeEE-eecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecC---------CCCceEEEEECCC-C
Confidence 32222 2335778999999999 88 78999999999999999998885544322 2336899999997 7
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~ 296 (538)
.+|++|+.||.|++||+++++.. +..+...|...|++++|+|++.+|++++++.|++||+++.....
T Consensus 183 ~~lasg~~dg~i~iwd~~~~~~~-------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 183 LLLALYSPDGILDVYNLSSPDQA-------------SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTL 249 (343)
T ss_dssp CEEEEECTTSCEEEEESSCTTSC-------------CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCB
T ss_pred CEEEEEcCCCEEEEEECCCCCCC-------------ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcce
Confidence 99999999999999999987531 01222237889999999999999999998899999998753322
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc-CCeEEEeeccCc
Q 009266 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGG 375 (538)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~-dg~i~iwd~~~~ 375 (538)
. +..+..|.....-.+++| +|+|++|++++. ++.|+||++...
T Consensus 250 ~-----------------------------------~~~~~~~~~~~~~~~~~~-~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 250 A-----------------------------------YPTYTIPEFKTGTVTYDI-DDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp S-----------------------------------SCCCBC-----CCEEEEE-CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred e-----------------------------------ecccccccccccceEEEE-CCCCCEEEEecCCCCcEEEEEEccc
Confidence 2 111222222211136888 999999999988 999999999766
Q ss_pred ceeEEeecCcceeeEEeecC---CCCeEEEeecCCceEEecCCC
Q 009266 376 ELIRVIEADRHVVNCIEPHP---HSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~dg~v~vw~~~~ 416 (538)
...... .++..++|+| +.+.|++++.|+.++++-...
T Consensus 294 ~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 294 TKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp TCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred ccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 543332 5788999999 888999999999999875443
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=265.01 Aligned_cols=290 Identities=14% Similarity=0.076 Sum_probs=220.0
Q ss_pred EECCCCceeeeeccCCCCCeEEEEEeecCC---CceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCc
Q 009266 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTD---DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~~v~~l~~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (538)
|+....+.+.. +.+|...|++|+|+| + +.+|++++.+|.|++|++.+........+.+|...|++++|+|++ .
T Consensus 24 ~~~~~~~~~~~-~~~h~~~v~~~~~~~--~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 99 (368)
T 3mmy_A 24 DNHNPMKDIEV-TSSPDDSIGCLSFSP--PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-S 99 (368)
T ss_dssp CSSCTTCCEEC-SSCCSSCEEEEEECC--TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-S
T ss_pred CCCCCcceeEe-ccCCCCceEEEEEcC--CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-C
Confidence 34444444444 489999999999999 7 699999999999999999874444334578899999999999998 6
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE--cCCCCcEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
+|++++.||.|++|++.+++.+.... +...|.+++| +|+ +.+|++++.+|.|++|++++++....
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~- 166 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQAIQIAQ-----------HDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMV- 166 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEE-
T ss_pred EEEEEcCCCcEEEEEcCCCCceeecc-----------ccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEE-
Confidence 89999999999999999988766443 4457999999 886 78999999999999999998753211
Q ss_pred CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 009266 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (538)
... ...+.++.+.+. .+++++.++.+++|++.....
T Consensus 167 --------------~~~-~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~---------------------------- 202 (368)
T 3mmy_A 167 --------------LQL-PERCYCADVIYP-MAVVATAERGLIVYQLENQPS---------------------------- 202 (368)
T ss_dssp --------------EEC-SSCEEEEEEETT-EEEEEEGGGCEEEEECSSSCE----------------------------
T ss_pred --------------Eec-CCCceEEEecCC-eeEEEeCCCcEEEEEeccccc----------------------------
Confidence 111 235666776654 344455577999999876311
Q ss_pred CCCCCCcccCCceee-ccccceeeeEEEEecCCCc----EEEEeccCCeEEEeeccCc---ceeEEeecCcc--------
Q 009266 323 STANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCE----YVVSGSDCGRIFIWKKKGG---ELIRVIEADRH-------- 386 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~s~~~~----~l~~gs~dg~i~iwd~~~~---~~~~~~~~h~~-------- 386 (538)
....+. .+... +..+.+ .+... .+++++.+|.|++|++... +.+..+.+|..
T Consensus 203 ---------~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 203 ---------EFRRIESPLKHQ--HRCVAI-FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp ---------EEEECCCSCSSC--EEEEEE-EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred ---------hhhhccccccCC--CceEEE-cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence 001111 11122 333433 33333 3999999999999999887 56778888876
Q ss_pred ----eeeEEeecCCCCeEEEeecCCceEEecCCCCcc-cccCccceeeeecc--cCc-eeeeccCCCCCcee
Q 009266 387 ----VVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYF 450 (538)
Q Consensus 387 ----~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~ 450 (538)
.|++++|+|++++|++++.||.|+||++.++++ ..+..|...+..+. +++ +|++++.++....+
T Consensus 271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp EEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 799999999999999999999999999998765 56677888888776 666 99999988755544
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-33 Score=286.99 Aligned_cols=249 Identities=18% Similarity=0.207 Sum_probs=202.8
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC--CCEEEEecCC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISGSDD 82 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~t~~~d 82 (538)
.++|++++|++|+.||+|+||++.++.. .....+.+|.+.|++++|+|+ +++|++|+.|
T Consensus 16 ~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 16 VLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp CCCSSSCCEEEEETTTEEEEEEEETTEE-------------------EEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred EECCCCCeEEEEECCCcEEEEecCCCCC-------------------ccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 4667899999999999999999984332 235678999999999999998 9999999999
Q ss_pred CeEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCC--CceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 83 RRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 83 ~~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
|.|++|++.+++ .+..+ .+|...|++++|+| + +.+|++|+.+|.|++|++.++.......+.+|...|.+++|
T Consensus 77 g~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp--~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~ 153 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAP--HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (753)
T ss_dssp SCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE
T ss_pred CeEEEEECCCCcccccccc-cCCCCCeEEEEECC--CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEe
Confidence 999999999886 44444 78999999999999 7 99999999999999999998866555567889999999999
Q ss_pred cCC-------------CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCC--CcEEEEEe
Q 009266 159 EPG-------------SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAVAG 223 (538)
Q Consensus 159 ~~~-------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~ 223 (538)
+|. + .+|++|+.||.|++||++++......... ..+ |...|.+++|+|++ +.+|++++
T Consensus 154 ~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----~~~--h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 154 APATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST----LEG--HSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEE----ECC--CSSCEEEEEECCCCSSSEEEEEEE
T ss_pred cCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeee----ecC--CCCcEEEEEeccCCCCCCEEEEEe
Confidence 994 5 68999999999999999987543221110 011 44589999999974 68999999
Q ss_pred CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
.||.|++|++++++.... ........|...|.+++|+|+|++|++++ ++.|++|++...
T Consensus 227 ~Dg~I~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 227 QDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSCEEEEEESSSSSCCB----------CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred cCCEEEEecCCCCCCcce----------eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 999999999998642111 11122234677899999999999999987 669999999864
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.4e-32 Score=243.36 Aligned_cols=280 Identities=13% Similarity=0.043 Sum_probs=166.7
Q ss_pred eEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEE-e-cCCCeEEEEE
Q 009266 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-G-SDDRRVILWD 89 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t-~-~~d~~i~iw~ 89 (538)
-+++++ ..+|++|+...+. .++.++++.+|+.+|..++|.|+-.-|++ + +.=..-.++.
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~s 116 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAW------------------QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRA 116 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSS------------------BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEE
T ss_pred EEEEec-cceEEEcccCCCc------------------cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEE
Confidence 466776 5689999999872 12334566666666666666664321111 1 1100111111
Q ss_pred CC--CC-c--eeeeeccCCCCCeEEEEEeecCCCceEEEEe--CCCcEEEeeccc-CceeeeeeccccCCCcEEEEEcC-
Q 009266 90 WK--TE-R--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILE-RGGVETKLLGKHQGRAHKLAIEP- 160 (538)
Q Consensus 90 ~~--~~-~--~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~--~dg~v~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~- 160 (538)
+. .. + .......+|...|..+ + +++++.+++ .++.|++|++.. ++.+.. +..|...++.++|+|
T Consensus 117 la~spd~~~~~~~l~s~g~~~~v~~l---~--~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s--~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 117 LFCSSDDESEKQVLLKSGNIKAVLGL---T--KRRLVSSSGTLSDQQVEVMTFAEDGGGKEN--QFLMPPEETILTFAEV 189 (356)
T ss_dssp ECC------CCEEEEEEEEEEEEEEE---T--TTEEEEEESSSTTCEEEEEEECTTSCEEEE--EEECCCSSCEEEEEEE
T ss_pred EEECCCccccccEEEeCCCeEEEEec---C--CCcEEEecccCCCCcEEEEEECCCCceeee--eccCCCceeeEEeecc
Confidence 10 00 0 0000002233223222 3 555555433 467777777733 444333 557888888999998
Q ss_pred --CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccc
Q 009266 161 --GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (538)
Q Consensus 161 --~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 238 (538)
++ .+|++++.|++|+|||+++++++..+..+.. +...+.+++|+|+ +.++++++.+.. +|+
T Consensus 190 ~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~-------~v~~v~~vafSpd-G~~lvs~s~~~~--~w~------ 252 (356)
T 2w18_A 190 QGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDDS-------YQASVCHKAYSEM-GLLFIVLSHPCA--KES------ 252 (356)
T ss_dssp ETST-TEEEEEETTSEEEEEETTTCCEEEEEECCC----------CCCEEEEEEET-TEEEEEEC---------------
T ss_pred CCCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCCc-------ceeeeEEEEECCC-CCEEEEeccCCC--cce------
Confidence 55 6899999999999999999999988864321 2346888999997 677755443211 121
Q ss_pred cCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCc
Q 009266 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (538)
+++++ +++|++|+..+++
T Consensus 253 -------------------------------------laSGs~D~tIklWd~~tgk------------------------ 271 (356)
T 2w18_A 253 -------------------------------------ESLRSPVFQLIVINPKTTL------------------------ 271 (356)
T ss_dssp ------------------------------------------CCEEEEEEETTTTE------------------------
T ss_pred -------------------------------------eeccCCCcEEEEEECCCCE------------------------
Confidence 22222 2244445444321
Q ss_pred cccCCCCCCCCcccCCcee-----eccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceee-EE
Q 009266 318 SAASPSTANTDVRIAPQVY-----KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CI 391 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~ 391 (538)
.+..+ .+|... +.+..+ .+.++|+|+.|++|+|||+.+++++.++.+|...+. ++
T Consensus 272 --------------~l~v~~~~~p~Gh~~~--~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v 332 (356)
T 2w18_A 272 --------------SVGVMLYCLPPGQAGR--FLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV 332 (356)
T ss_dssp --------------EEEEEEECCCTTCCCC--EEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred --------------EEEEEEeeccCCCcce--eEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 01111 123322 233333 378999999999999999999999999999987655 58
Q ss_pred eecCCCCeEEEeecCCceEEecC
Q 009266 392 EPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 392 ~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
+|+|+|++||+|+.|++||||++
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999985
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=254.52 Aligned_cols=269 Identities=10% Similarity=0.071 Sum_probs=202.5
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
+++.+|++|+.||+|+||++.+++.+. .+. ...|.++.|+|. |++++.|++|++
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~---------------------~~~--~~~v~~~~~~~~---~~s~s~D~~i~~ 99 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTIT---------------------TIT--TPNPRTGGEHPA---IISRGPCNRLLL 99 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEE---------------------EEE--EECCCTTCCCCS---EEEECSTTEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEE---------------------EEe--cCCceeeeeCCc---eEEecCCCeEEE
Confidence 567889999999999999999888752 222 466888889987 999999999999
Q ss_pred EECC---------CCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 88 WDWK---------TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 88 w~~~---------~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
|+.. +++.+..+..+|...|.+++|+|..++.+|++++.||+|++|++.+++.... ....|...|++++|
T Consensus 100 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~~i~~~~~ 178 (343)
T 3lrv_A 100 LYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV-HSAKSDVEYSSGVL 178 (343)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE-ECCCSSCCCCEEEE
T ss_pred EEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-EecCCCCceEEEEE
Confidence 9655 5555556656788899999999855688999999999999999998877543 12345668999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEecCCCCee-eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcc
Q 009266 159 EPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (538)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 237 (538)
+|++ .+|++|+.||.|++||+++++.. ..+.. + |..+|++++|+|+ +.+|++++ ++.|++||+++.+
T Consensus 179 ~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~-------~--h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 179 HKDS-LLLALYSPDGILDVYNLSSPDQASSRFPV-------D--EEAKIKEVKFADN-GYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp CTTS-CEEEEECTTSCEEEEESSCTTSCCEECCC-------C--TTSCEEEEEECTT-SSEEEEEE-SSBEEEEETTSST
T ss_pred CCCC-CEEEEEcCCCEEEEEECCCCCCCccEEec-------c--CCCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcCCCC
Confidence 9999 79999999999999999998876 55543 0 2348999999997 78999999 5599999999875
Q ss_pred ccCCCCCCCCCcccCCCCccCCCccce--EEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccC
Q 009266 238 WDGSTDFGQPADYFCPPNLIGDEQVGI--TGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (538)
..... . ....+...+ .+++|+|+|++|++++ ++.|++|++....
T Consensus 247 ~~~~~-----------~-~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~-------------------- 294 (343)
T 3lrv_A 247 GTLAY-----------P-TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT-------------------- 294 (343)
T ss_dssp TCBSS-----------C-CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT--------------------
T ss_pred cceee-----------c-ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc--------------------
Confidence 32210 0 000112222 5799999999999966 5689999986531
Q ss_pred CCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC---CCcEEEEeccCCeEEEeec
Q 009266 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP---KCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~---~~~~l~~gs~dg~i~iwd~ 372 (538)
+.+.. ..+..++| +| +.+.|++++.+|.++++-.
T Consensus 295 --------------------~~~~~----~~~~~~~~-~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 295 --------------------KNWTK----DEESALCL-QSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp --------------------CSEEE----EEEEECCC-----CCCCEEEEEEETTEEEEEEE
T ss_pred --------------------cceEe----cCceeEec-CccccccceeEEEecCCceEEEEe
Confidence 11111 12667777 77 8889999999999988754
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-32 Score=263.66 Aligned_cols=315 Identities=9% Similarity=0.007 Sum_probs=221.0
Q ss_pred CCCCCceEEeeccCCceEEeeeccCc---eeccccchhh------------------ccccc---------------ceE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQ---LSTRNFALRR------------------RASED---------------LVL 49 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~---~~~~~~~~~~------------------~~~~~---------------~~~ 49 (538)
++|++++|+++ .++.|++|++.+|+ .+.....+.. ....+ ...
T Consensus 12 ~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (450)
T 2vdu_B 12 TSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAK 90 (450)
T ss_dssp ECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------------
T ss_pred ecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCcc
Confidence 57788866666 57899999999998 4433111100 00000 000
Q ss_pred EeeeeeEEcCCcCcEEEEEEcCCCCEE-EEecCCCeEEEEECC--CCceeeeec-cCCCCCeEEEEEeecCCCceEEEEe
Q 009266 50 RLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWK--TERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~g~~l-~t~~~d~~i~iw~~~--~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
.........+|.+.|++++|+|++++| ++|+.||.|+||++. +++.+..+. ..|...|++++|+| ++.+|++++
T Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~ 168 (450)
T 2vdu_B 91 VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTVIIAD 168 (450)
T ss_dssp ---------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--TSSEEEEEE
T ss_pred ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--CCCEEEEEe
Confidence 011222345678899999999999996 899999999999998 787766652 25778999999999 999999999
Q ss_pred CCCcEEEeecccCceee--eeeccccCCCcEEEEEcCC---CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCc
Q 009266 126 ADGQVRHAQILERGGVE--TKLLGKHQGRAHKLAIEPG---SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (538)
Q Consensus 126 ~dg~v~vwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (538)
.+|.|++|++.++.... ...+.+|...|++++|+|+ + .+|++++.|+.|++|++++++.+..+.. +
T Consensus 169 ~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------~- 239 (450)
T 2vdu_B 169 KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWLF-------G- 239 (450)
T ss_dssp TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEECC-------C-
T ss_pred CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeeec-------C-
Confidence 99999999998776542 2247789999999999999 7 7899999999999999999887765321 1
Q ss_pred ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCC----------CccCCCccceEEEEEc
Q 009266 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP----------NLIGDEQVGITGLAFS 270 (538)
Q Consensus 201 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~~~s 270 (538)
+...|.+++|+ + +.+|++++.|+.|++||+++++.............++.. .........|.+++|+
T Consensus 240 -h~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 240 -HKHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp -CSSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred -CCCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 34479999999 6 799999999999999999988754432211100000000 0001234579999999
Q ss_pred CCCCEEEEEc--CCeEEEeec--cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeee
Q 009266 271 DQSELLVSYN--DEFIYLFTQ--DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (538)
Q Consensus 271 ~~~~~l~~~~--~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (538)
|++++|++++ ++.|++|++ ..+.. ...+..+..+ . .+.
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~-----------------------------------l~~~~~~~~~-~--~v~ 358 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGD-----------------------------------LALKQIITFP-Y--NVI 358 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTC-----------------------------------EEEEEEEECS-S--CEE
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCc-----------------------------------eeeccEeccC-C--ceE
Confidence 9999998886 568999999 33100 1344556666 3 389
Q ss_pred EEEEecCCCcEEEEecc------CCeEEEeeccC
Q 009266 347 GVNFFGPKCEYVVSGSD------CGRIFIWKKKG 374 (538)
Q Consensus 347 ~v~~~s~~~~~l~~gs~------dg~i~iwd~~~ 374 (538)
+++| +|++.++++++. +..|.||.+..
T Consensus 359 ~~~~-~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 359 SLSA-HNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEE-ETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEe-cCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 9999 896555555443 45578887643
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.5e-33 Score=266.06 Aligned_cols=253 Identities=9% Similarity=0.055 Sum_probs=183.9
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC--------CCCE
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--------DGDI 75 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------~g~~ 75 (538)
.++++.+.+|++++.|++|+||++.+++.. ...+...+.+|.+.|++|+|+| ++++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETII----------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEE----------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccc----------------eeeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence 467888899999999999999999988764 3344567899999999999998 7899
Q ss_pred EEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCC-ceEEEEeCCCcEEEeecccCceeee-----------
Q 009266 76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVET----------- 143 (538)
Q Consensus 76 l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~~~----------- 143 (538)
|||||.|++|+|||+.++.++..+ .+|...|.+++|+| ++ .+|++++.|++|++||+.+++....
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p--~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRP--SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEET--TEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred EEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECC--CCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 999999999999999888877776 57889999999999 76 4899999999999999987654321
Q ss_pred ------------eeccccCCCcEEEEEc-CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCC--------CCcce
Q 009266 144 ------------KLLGKHQGRAHKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR--------RNYMT 202 (538)
Q Consensus 144 ------------~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~ 202 (538)
....+|...+.++.|+ |++ ..|++++.|+++++|++.+++....+..+..... .....
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred EEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 1124678889999987 677 7899999999999999988776554433221100 00001
Q ss_pred eeeeEEEEEcC-CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC
Q 009266 203 VVNLNAIAIDP-RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (538)
Q Consensus 203 ~~~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (538)
...+....|+| .++.++++|+.||.|++||+.+++. ......|..+|.+++|+|+|++||++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~---------------~~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS---------------NSIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC---------------CEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE---------------EEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 11122233444 3355777888999999999988752 1222345678999999999999999999
Q ss_pred CeEEEeeccC
Q 009266 282 EFIYLFTQDM 291 (538)
Q Consensus 282 ~~i~~~d~~~ 291 (538)
+.+.+|.+..
T Consensus 380 ~Gv~lvrL~g 389 (393)
T 4gq1_A 380 GSVLLTRLMG 389 (393)
T ss_dssp SEEEEEEEGG
T ss_pred CCeEEEEEeC
Confidence 9998888753
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.3e-31 Score=251.46 Aligned_cols=263 Identities=14% Similarity=0.106 Sum_probs=185.1
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEE
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
||++.+.+++... ..|...|++++|+| ++.+|++|+.++ ++||++.+....... +...+..+++.+.+..++
T Consensus 3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPE-NHVSNPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHPVAHIMSQ----EMRHLSKVRMLHRTNYVA 74 (355)
T ss_dssp -----------------CCCCCEEEECT--TSSEEEEECSSE-EEEEEETTEEEEEEE----ECSCCCEEEECTTSSEEE
T ss_pred cccccccCCcccc-ccCCCceEEEEECC--CCCEEEEEcCCE-EEEEecCCcceeeee----ecCCeEEEEEcCCCCEEE
Confidence 5666666666555 78999999999999 999999988765 789998876554432 222578888888885455
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-cccCCCCCC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFG 245 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~ 245 (538)
++++.+++|++||+.+++.+..+.. ...|.+++|+++ .++++ .++.|++|++.+. +...
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~~-----------~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~----- 134 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIKV-----------DAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRIT----- 134 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEEC-----------SSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSS-----
T ss_pred EEECCccEEEEEECCCCcEEEEEEC-----------CCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeE-----
Confidence 7788889999999999998887762 337999999985 33333 4789999999876 3211
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEE--c-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (538)
.+.. ....+++++ .+++++ + ++.|++|++.++.........+
T Consensus 135 ---------~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~-------------------- 179 (355)
T 3vu4_A 135 ---------DDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV-------------------- 179 (355)
T ss_dssp ---------CCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------
T ss_pred ---------Eecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc--------------------
Confidence 1111 444566777 566654 3 6799999998753211100000
Q ss_pred CCCCCCcccC-CceeeccccceeeeEEEEecCCCcEEEEeccCCe-EEEeeccCcceeEEee-c-CcceeeEEeecCCCC
Q 009266 323 STANTDVRIA-PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIE-A-DRHVVNCIEPHPHST 398 (538)
Q Consensus 323 ~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~-i~iwd~~~~~~~~~~~-~-h~~~v~~~~~s~~~~ 398 (538)
......+ ...+.+|... |.+++| +|+|++||+|+.|++ |+|||+.+++++..+. + |...|++++|+|+++
T Consensus 180 ---~~~~~~p~~~~~~~h~~~--v~~~~~-s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~ 253 (355)
T 3vu4_A 180 ---QQKAILGKGVLIKAHTNP--IKMVRL-NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS 253 (355)
T ss_dssp ----------CCEEECCCSSC--EEEEEE-CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC
T ss_pred ---cccccCcccEEEEccCCc--eEEEEE-CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC
Confidence 0000112 6778899887 999999 999999999999998 9999999999999998 5 999999999999999
Q ss_pred eEEEeecCCceEEecCCCCc
Q 009266 399 VLASSGIESDIKILTPNAAD 418 (538)
Q Consensus 399 ~l~s~~~dg~v~vw~~~~~~ 418 (538)
+|++++.|++|+||++..+.
T Consensus 254 ~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 254 KLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEEETTCEEEEEESSCCS
T ss_pred EEEEEECCCEEEEEEccCCC
Confidence 99999999999999997653
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.6e-31 Score=252.28 Aligned_cols=269 Identities=12% Similarity=0.140 Sum_probs=212.9
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceE-EEEeCCCcEEEeecccCceeeeeeccccCCC
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
.++++++.++.|++|++.+++.+..+ ..| ..+.+++|+| ++++| ++++.++.|++|++.+++.+.. +..+ ..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~--~~~~-~~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIAT--VPAG-SS 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEE--EECS-SS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecC-CCcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEE--EECC-CC
Confidence 46888999999999999999887776 445 4589999999 99877 6677899999999988877654 4333 38
Q ss_pred cEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 009266 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 232 (538)
+.+++|+|+++.++++++.++.|++||+.+++.+..+..+ ..+.+++|+|++..++++++.++.|++|+
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-----------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----------KSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----------SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-----------CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 9999999999655567778899999999999887776632 25789999998433447888899999999
Q ss_pred cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE-EEEc-CCeEEEeeccCCCCCCCCCCCCcccccccc
Q 009266 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (538)
+.+++.... ... ...+.+++|+|++++| +++. ++.|++|++.++
T Consensus 145 ~~~~~~~~~---------------~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------ 190 (391)
T 1l0q_A 145 TVTKAVINT---------------VSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------ 190 (391)
T ss_dssp TTTTEEEEE---------------EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------
T ss_pred CCCCcEEEE---------------Eec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------------------
Confidence 988764221 111 2457899999999887 4544 568999998763
Q ss_pred ccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec---cCCeEEEeeccCcceeEEeecCcce
Q 009266 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRIFIWKKKGGELIRVIEADRHV 387 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs---~dg~i~iwd~~~~~~~~~~~~h~~~ 387 (538)
.....+..+ . .+.+++| +|++++|++++ .++.|++|++.+++++..+..|. .
T Consensus 191 --------------------~~~~~~~~~-~--~~~~~~~-~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~ 245 (391)
T 1l0q_A 191 --------------------SVIDTVKVE-A--APSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-D 245 (391)
T ss_dssp --------------------EEEEEEECS-S--EEEEEEE-CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-S
T ss_pred --------------------eEEEEEecC-C--CccceEE-CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-C
Confidence 222333322 2 3788998 99999999887 68999999999999998888765 4
Q ss_pred eeEEeecCCCCeE-EEeecCCceEEecCCCCcc
Q 009266 388 VNCIEPHPHSTVL-ASSGIESDIKILTPNAADR 419 (538)
Q Consensus 388 v~~~~~s~~~~~l-~s~~~dg~v~vw~~~~~~~ 419 (538)
+.+++|+|++++| ++++.++.|++|++.+++.
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 7899999999977 6778899999999988754
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=5.8e-31 Score=259.46 Aligned_cols=335 Identities=13% Similarity=0.057 Sum_probs=251.5
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEc-CCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
++|++.++++++.+++|.+||..+++++ .++. +|. +.+++|+|+|++|++++.+++
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~---------------------~~i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIV---------------------KVIDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEE---------------------EEEECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEE---------------------EEEecCcc--cceEEECCCCCEEEEECCCCe
Confidence 4567888999999999999999999875 3455 443 889999999999999999999
Q ss_pred EEEEEC--CCCceeeeeccCCCCCeEEEEEeec--CCCceEEEEeC-CCcEEEeecccCceeeeeeccc--------cCC
Q 009266 85 VILWDW--KTERVKLSFHSGHNDNVFQAKIMPF--TDDRSIVTCAA-DGQVRHAQILERGGVETKLLGK--------HQG 151 (538)
Q Consensus 85 i~iw~~--~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~--------~~~ 151 (538)
|++||+ .+++++.++. +...+..++|+|. .+|++|++++. +++|.+||..+.+.+......+ |..
T Consensus 202 V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~ 279 (543)
T 1nir_A 202 IDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 279 (543)
T ss_dssp EEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred EEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccC
Confidence 999999 8888877773 4556899999961 16888888874 8999999999888776543322 333
Q ss_pred -CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE-EEEeCCCeEE
Q 009266 152 -RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYTR 229 (538)
Q Consensus 152 -~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~v~ 229 (538)
.+..+.++|+++.++++...++.|.+||+.+.+.+...... ....+..++|+|+ +++| +++..+++|.
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---------~~~~~~~~~~spd-g~~l~va~~~~~~v~ 349 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---------AAPFLHDGGWDSS-HRYFMTAANNSNKVA 349 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE---------CCSSCCCEEECTT-SCEEEEEEGGGTEEE
T ss_pred CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec---------cCcCccCceECCC-CCEEEEEecCCCeEE
Confidence 78999999988788889999999999999887655422211 1224678999998 5655 4555689999
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-CCEEEEEc--CCeEEEeeccCCCCCCCCCCCCcccc
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~ 306 (538)
+||+.++++......+ ...|......+ ++|+ +.+++++. +++|.+|++.+.....
T Consensus 350 v~D~~tg~l~~~i~~g-----------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~---------- 407 (543)
T 1nir_A 350 VIDSKDRRLSALVDVG-----------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---------- 407 (543)
T ss_dssp EEETTTTEEEEEEECS-----------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT----------
T ss_pred EEECCCCeEEEeeccC-----------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch----------
Confidence 9999998764432211 11123223333 4677 66777764 5699999987632110
Q ss_pred ccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-------cCCeEEEeeccCccee-
Q 009266 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-------DCGRIFIWKKKGGELI- 378 (538)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-------~dg~i~iwd~~~~~~~- 378 (538)
...+.++++.+|... +..+.| +|++++|++++ .+++|.|||+.+++.+
T Consensus 408 ---------------------~~~~~v~~l~~~g~~--~~~v~~-~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~ 463 (543)
T 1nir_A 408 ---------------------YAWKKVAELQGQGGG--SLFIKT-HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 463 (543)
T ss_dssp ---------------------TBTSEEEEEECSCSC--CCCEEC-CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred ---------------------hcCeEEEEEEcCCCC--ceEEEc-CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe
Confidence 013456778877765 677888 99999999987 3779999999999887
Q ss_pred EEe--------ecCcceeeEEeecCCCCeEEEee-----cCCceEEecCCCCcccc
Q 009266 379 RVI--------EADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRAT 421 (538)
Q Consensus 379 ~~~--------~~h~~~v~~~~~s~~~~~l~s~~-----~dg~v~vw~~~~~~~~~ 421 (538)
..+ ..+...+..+.|+|+|+.|+++. .++.|.|||..++++..
T Consensus 464 ~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 464 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 554 34567899999999999887663 47999999999987643
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.7e-31 Score=256.59 Aligned_cols=278 Identities=15% Similarity=0.156 Sum_probs=219.7
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
+|. |++.++++++.++.|++|++.+++.+.. .....+.+|.+.|++++|+|+++++++++.++
T Consensus 129 ~~s-~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 129 RFI-DNTRLAIPLLEDEGMDVLDINSGQTVRL----------------SPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp EES-SSSEEEEEBTTSSSEEEEETTTCCEEEE----------------CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred EEe-CCCeEEEEeCCCCeEEEEECCCCeEeee----------------cCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 444 4888899999999999999998887521 11124568999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCC
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (538)
.|++|++.+++.+..+ ..|...+.+++|+| ++.++++++ .++.|++|++.+++.+.. +.. ...+.+++|+|++
T Consensus 192 ~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~g 265 (433)
T 3bws_A 192 AVHVFDLKTLAYKATV-DLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRK--TDK-IGLPRGLLLSKDG 265 (433)
T ss_dssp EEEEEETTTCCEEEEE-ECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEE--CCC-CSEEEEEEECTTS
T ss_pred EEEEEECCCceEEEEE-cCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEE--ecC-CCCceEEEEcCCC
Confidence 9999999999887777 68889999999999 998885554 799999999988776554 443 3458999999999
Q ss_pred CcEEEEEc--------CCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 163 PHVFYTCG--------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 163 ~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
.+|++++ .++.|++|++++++....+. +...+.+++|+|++..++++++.++.|++|++.
T Consensus 266 -~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 266 -KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-----------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp -SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-----------EEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred -CEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-----------CCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 5677766 58899999999987766653 334688999999854577888999999999999
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC----------------CeEEEeeccCCCCCCCC
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----------------EFIYLFTQDMGLGPNPP 298 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------------~~i~~~d~~~~~~~~~~ 298 (538)
+++.... . .+...+.+++|+|+|++|++++. +.|++|++.++
T Consensus 334 ~~~~~~~---------------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~------ 391 (433)
T 3bws_A 334 EKKVQKS---------------I-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD------ 391 (433)
T ss_dssp TTEEEEE---------------E-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT------
T ss_pred CCcEEEE---------------e-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC------
Confidence 7653211 1 13456899999999998877764 38999998763
Q ss_pred CCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc-CCeEEEeeccC
Q 009266 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG 374 (538)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~-dg~i~iwd~~~ 374 (538)
.....+..+. .+.+++| +|+|++|++++. ++.|++|++..
T Consensus 392 --------------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 392 --------------------------------TVKEFWEAGN---QPTGLDV-SPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp --------------------------------EEEEEEECSS---SEEEEEE-CTTSCEEEEEETTTTEEEEEEETT
T ss_pred --------------------------------cEEEEecCCC---CCceEEE-cCCCCEEEEEECCCCeEEEEEecC
Confidence 3334444433 3789998 999999988764 99999999853
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.7e-31 Score=258.02 Aligned_cols=263 Identities=18% Similarity=0.210 Sum_probs=198.5
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCC-EEEEecCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISGSDD 82 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~t~~~d 82 (538)
+|.+.++.+|++++.+|.|+||++.+...... ......+...+.+|...|++|+|+|++. +|++|+.+
T Consensus 135 ~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 135 RYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EECCCCCcEEEEECCCCcEEEEECCCcccccC-----------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 34444478999999999999999985311100 0011234577889999999999999988 99999999
Q ss_pred CeEEEEECCCCcee------eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce-eeeeeccccCCCcEE
Q 009266 83 RRVILWDWKTERVK------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHK 155 (538)
Q Consensus 83 ~~i~iw~~~~~~~~------~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~v~~ 155 (538)
|.|+||++.++... .....+|...|.+++|+|. ++.+|++++.+|.|++|+++++.. .....+..|...|++
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 99999999874321 2223689999999999982 467888999999999999987631 122336689999999
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
++|+|+++.+|++|+.+|.|++||+++ ...+..+.. +...|.+++|+|++..+|++++.+|.|++|+++
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~----------h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES----------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC----------CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec----------CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 999999977899999999999999998 445555553 334799999999866789999999999999998
Q ss_pred CccccCCCC---CCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEc-CCeEEEeeccCC
Q 009266 235 KYKWDGSTD---FGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 235 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~~~d~~~~ 292 (538)
......... -+.+ .+......|...|++++|+|+++ +|++++ ++.|++|++...
T Consensus 353 ~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPP----ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCT----TEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCc----ceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 743111000 0000 11223345678899999999998 777777 668999998753
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=1.8e-30 Score=248.64 Aligned_cols=294 Identities=11% Similarity=0.046 Sum_probs=220.6
Q ss_pred CCCCceEEeec----cCC----ceEEeee--ccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcC-----
Q 009266 7 NNNNKRARTSV----DKA----LVDVWLR--ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT----- 71 (538)
Q Consensus 7 ~~~~~~l~t~~----~d~----~v~iwd~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----- 71 (538)
+.....+++|+ .+| +|+|||+ .+++++. ...+.+|...+..+++++
T Consensus 72 ~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~d~~~ 132 (415)
T 2hqs_A 72 ALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA-------------------QNSYKVNKQWLRYAGHTASDEVF 132 (415)
T ss_dssp TTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE-------------------EEEEEECGGGHHHHHHHHHHHHH
T ss_pred hcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe-------------------eeEEEcChhHHHHHHHHHHHHHH
Confidence 34445676876 457 9999999 8887652 245778888888887775
Q ss_pred ---------CCCEEEEecCC------CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC---cEEEe
Q 009266 72 ---------DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHA 133 (538)
Q Consensus 72 ---------~g~~l~t~~~d------~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg---~v~vw 133 (538)
.+..|+.++.+ +.|++|++.. ..+..+ .+|...|.+++|+| +|++|++++.++ .|++|
T Consensus 133 ~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l-~~~~~~v~~~~~Sp--dg~~la~~s~~~~~~~i~~~ 208 (415)
T 2hqs_A 133 EKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQ 208 (415)
T ss_dssp HHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEE-EEESSCEEEEEECT--TSSEEEEEECTTSSCEEEEE
T ss_pred HHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEE-eCCCCcceeeEEcC--CCCEEEEEEecCCCcEEEEE
Confidence 15666666554 7999999974 444555 67899999999999 999999999875 99999
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCc--EEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
++.+++... +..|...+.+++|+|++..++++++.++. |++|++.+++... +.. +...+.+++|
T Consensus 209 d~~tg~~~~---l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~-l~~----------~~~~~~~~~~ 274 (415)
T 2hqs_A 209 TLANGAVRQ---VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTD----------GRSNNTEPTW 274 (415)
T ss_dssp ETTTCCEEE---EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-CCC----------CSSCEEEEEE
T ss_pred ECCCCcEEE---eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEe-CcC----------CCCcccceEE
Confidence 999876643 55677889999999999545447776655 9999999887532 221 2336899999
Q ss_pred cCCCCcEEEEEeC-CC--eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC----CeE
Q 009266 212 DPRNANLFAVAGS-DE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFI 284 (538)
Q Consensus 212 ~~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----~~i 284 (538)
+|+ +++|++++. ++ .|++|++.+++. .....+...+.+++|+|+|++|++++. ..|
T Consensus 275 spd-g~~l~~~s~~~g~~~i~~~d~~~~~~----------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i 337 (415)
T 2hqs_A 275 FPD-SQNLAFTSDQAGRPQVYKVNINGGAP----------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI 337 (415)
T ss_dssp CTT-SSEEEEEECTTSSCEEEEEETTSSCC----------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred CCC-CCEEEEEECCCCCcEEEEEECCCCCE----------------EEEecCCCcccCeEECCCCCEEEEEECcCCceEE
Confidence 998 677776665 45 677778877542 111223457889999999999988763 379
Q ss_pred EEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC
Q 009266 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (538)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d 364 (538)
++|++.++. ...+..+. .+.+++| +|+|++|++++.+
T Consensus 338 ~~~d~~~~~---------------------------------------~~~l~~~~---~~~~~~~-spdg~~l~~~s~~ 374 (415)
T 2hqs_A 338 AKQDLATGG---------------------------------------VQVLSSTF---LDETPSL-APNGTMVIYSSSQ 374 (415)
T ss_dssp EEEETTTCC---------------------------------------EEECCCSS---SCEEEEE-CTTSSEEEEEEEE
T ss_pred EEEECCCCC---------------------------------------EEEecCCC---CcCCeEE-cCCCCEEEEEEcC
Confidence 999987642 12333333 3788998 9999999998887
Q ss_pred C---eEEEeeccCcceeEEeecCcceeeEEeecCCCC
Q 009266 365 G---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST 398 (538)
Q Consensus 365 g---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~ 398 (538)
+ .|++|++. ++.+..+..|.+.|.+++|+|.-.
T Consensus 375 ~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 GMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 6 89999986 666788899999999999999654
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=8.4e-30 Score=243.99 Aligned_cols=298 Identities=14% Similarity=0.089 Sum_probs=223.4
Q ss_pred CcCcEEEEEEcCCCC-EEEEec----CCC----eEEEEEC--CCCceeee-eccCCCCCeEEEEEeec------------
Q 009266 60 HRGCVNTVSFNTDGD-ILISGS----DDR----RVILWDW--KTERVKLS-FHSGHNDNVFQAKIMPF------------ 115 (538)
Q Consensus 60 h~~~v~~~~~s~~g~-~l~t~~----~d~----~i~iw~~--~~~~~~~~-~~~~~~~~v~~l~~~~~------------ 115 (538)
+...|...+|.+.|. +|++|+ .+| .|+|||+ .+++++.. .+.+|...+..+++++.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345788889988774 666776 467 8999999 88887633 23688888888777641
Q ss_pred CCCceEEEEeCC------CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC---cEEEEecCCCCee
Q 009266 116 TDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAAT 186 (538)
Q Consensus 116 ~~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~ 186 (538)
..+..++.++.+ +.|++|++.... .. .+..|...+.+++|+|++ +.|++++.++ .|++||+.+++..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~--~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF--VVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE--EEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCC-CE--EEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEE
Confidence 015677766654 799999997433 33 366788999999999999 6788888775 9999999998775
Q ss_pred eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE-EEeCCCe--EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccc
Q 009266 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (538)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (538)
.... +...+.+++|+|+ +++|+ +++.++. |++|++.+++. .....+...
T Consensus 217 ~l~~-----------~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~----------------~~l~~~~~~ 268 (415)
T 2hqs_A 217 QVAS-----------FPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQI----------------RQVTDGRSN 268 (415)
T ss_dssp EEEC-----------CSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE----------------EECCCCSSC
T ss_pred Eeec-----------CCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCE----------------EeCcCCCCc
Confidence 4322 2236899999998 56555 6666654 99999987652 112234567
Q ss_pred eEEEEEcCCCCEEEEEcC--C--eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecc
Q 009266 264 ITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (538)
Q Consensus 264 i~~~~~s~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
+.+++|+|+|++|++++. + .|++|++.++. ...+..+
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---------------------------------------~~~l~~~ 309 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---------------------------------------PQRITWE 309 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------------------------------------CEECCCS
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---------------------------------------EEEEecC
Confidence 999999999998887773 3 68888877631 1223333
Q ss_pred ccceeeeEEEEecCCCcEEEEeccC---CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCC---ceEEec
Q 009266 340 RNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILT 413 (538)
Q Consensus 340 ~~~~~i~~v~~~s~~~~~l~~gs~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~v~vw~ 413 (538)
.. .+.+++| +|+|++|++++.+ +.|++|++.+++.. .+..|. .+.+++|+|+|++|++++.++ .|++|+
T Consensus 310 ~~--~~~~~~~-spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 310 GS--QNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp SS--EEEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred CC--cccCeEE-CCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 33 3778898 9999999988764 58999999988764 455554 899999999999999998877 799999
Q ss_pred CCCCcccccCccceeeeecc
Q 009266 414 PNAADRATLPTNIEQVLIPD 433 (538)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~ 433 (538)
+.++....+..|...+..++
T Consensus 385 ~~g~~~~~l~~~~~~v~~~~ 404 (415)
T 2hqs_A 385 TDGRFKARLPATDGQVKFPA 404 (415)
T ss_dssp TTSCCEEECCCSSSEEEEEE
T ss_pred CCCCcEEEeeCCCCCCcCCc
Confidence 99888888888888887665
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=7.8e-29 Score=244.26 Aligned_cols=308 Identities=11% Similarity=0.094 Sum_probs=230.0
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec--ccCceeeeee
Q 009266 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI--LERGGVETKL 145 (538)
Q Consensus 68 ~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~--~~~~~~~~~~ 145 (538)
+|+|++.++++++.+++|.+||..+++++.++..++. +..++|+| ++++|++++.+++|++||+ .+++.+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~-- 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAE-- 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEE--
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEE--
Confidence 4899999999999999999999999999888744554 89999999 9999999999999999999 67666544
Q ss_pred ccccCCCcEEEEEcC----CCCcEEEEEc-CCCcEEEEecCCCCeeeeeeecccCCCC-CcceeeeeEEEEEcCCCCcEE
Q 009266 146 LGKHQGRAHKLAIEP----GSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRR-NYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 146 ~~~~~~~v~~~~~~~----~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l 219 (538)
+. +...+..++|+| ++ ++|++++ .+++|.+||..+++++..+......... .......+.++.++|+++.++
T Consensus 218 i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred Ee-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 44 345679999999 99 5666666 5899999999999988877643210000 000122588999999877888
Q ss_pred EEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCC
Q 009266 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNP 297 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~ 297 (538)
++...++.|.+|++.+.+.... ... .+...+..++|+|+|++|++++ +++|.+||+.++
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~-------------~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----- 356 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTV-------------TSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----- 356 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEE-------------EEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-----
T ss_pred EEECCCCeEEEEEecCCCccee-------------EEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-----
Confidence 8888999999999987542110 011 1234577899999999776554 569999999874
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec----cccceeeeEEEEecCC-CcEEEEec-cCCeEEEee
Q 009266 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG----HRNCVTVKGVNFFGPK-CEYVVSGS-DCGRIFIWK 371 (538)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~v~~~s~~-~~~l~~gs-~dg~i~iwd 371 (538)
+....+.. |... . +.|++|+ +.+++++. .+++|.||+
T Consensus 357 ---------------------------------~l~~~i~~g~~ph~g~--g--~~~~~p~~g~~~~s~~~~d~~V~v~d 399 (543)
T 1nir_A 357 ---------------------------------RLSALVDVGKTPHPGR--G--ANFVHPKYGPVWSTSHLGDGSISLIG 399 (543)
T ss_dssp ---------------------------------EEEEEEECSSSBCCTT--C--EEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred ---------------------------------eEEEeeccCCCCCCCC--C--cccCCCCCccEEEeccCCCceEEEEE
Confidence 23333432 3322 1 2233677 66677765 579999999
Q ss_pred ccC-------cceeEEeecCcceeeEEeecCCCCeEEEee-------cCCceEEecCCCCccc-cc---------Cccce
Q 009266 372 KKG-------GELIRVIEADRHVVNCIEPHPHSTVLASSG-------IESDIKILTPNAADRA-TL---------PTNIE 427 (538)
Q Consensus 372 ~~~-------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-------~dg~v~vw~~~~~~~~-~~---------~~~~~ 427 (538)
+.+ +++++++.+|.+.+..++|+|++++|++++ .+++|.||++.+.+.. .. ..+..
T Consensus 400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~ 479 (543)
T 1nir_A 400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK 479 (543)
T ss_dssp CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC
T ss_pred eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCC
Confidence 988 899999999998899999999999999987 3789999999988764 22 34455
Q ss_pred eeeecc--cCc-eee
Q 009266 428 QVLIPD--HIR-WFA 439 (538)
Q Consensus 428 ~~~~~~--~~~-~l~ 439 (538)
.+..+. +++ .|+
T Consensus 480 ~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 480 RVVQPEYNKRGDEVW 494 (543)
T ss_dssp EEEEEEECSSSSEEE
T ss_pred ceEeccCCCCCCEEE
Confidence 555554 555 444
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=6.7e-29 Score=265.90 Aligned_cols=387 Identities=10% Similarity=0.015 Sum_probs=264.1
Q ss_pred ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC------Ce
Q 009266 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD------RR 84 (538)
Q Consensus 11 ~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d------~~ 84 (538)
++|+.++. +.|++|++.+|+. +.+.+|...|.+++|||+|++||+++.+ ..
T Consensus 25 ~~iaf~~~-~~l~~~~~~gg~~----------------------~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~ 81 (1045)
T 1k32_A 25 DRIIFVCC-DDLWEHDLKSGST----------------------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTAD 81 (1045)
T ss_dssp TEEEEEET-TEEEEEETTTCCE----------------------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred CEEEEEEC-CcEEEEECCCCcE----------------------EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCe
Confidence 56777664 6899999987764 4577899999999999999999988543 47
Q ss_pred EEEEECCCCceeeeeccCCCCCe-------EEEEEeecCCCceEEEEeCC------CcEEEeecccCceeee--------
Q 009266 85 VILWDWKTERVKLSFHSGHNDNV-------FQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVET-------- 143 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v-------~~l~~~~~~~~~~l~s~~~d------g~v~vwd~~~~~~~~~-------- 143 (538)
|++|++.+++. ..+ ..|...+ ..++|+| +|+++++++.+ ..|.+|++.++.....
T Consensus 82 i~~~d~~~g~~-~~l-t~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 157 (1045)
T 1k32_A 82 LYFYNGENGEI-KRI-TYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHI 157 (1045)
T ss_dssp EEEEETTTTEE-EEC-CCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEE
T ss_pred EEEEECCCCCe-EEc-ccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCccee
Confidence 99999988763 444 6788888 9999999 99977777744 3577777765442210
Q ss_pred ---------------------------------------eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC-C
Q 009266 144 ---------------------------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-G 183 (538)
Q Consensus 144 ---------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~ 183 (538)
..+.+|...+.++.|+++ .++++++.++.++||.+.. +
T Consensus 158 ~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g 235 (1045)
T 1k32_A 158 LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDG 235 (1045)
T ss_dssp EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTS
T ss_pred eeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCC
Confidence 112456777888889886 5777888889999998754 2
Q ss_pred CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccc
Q 009266 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (538)
.....+..+ ..+..++|+|+ +++|+.+ .++.|++|++...++. ........ .......+...
T Consensus 236 ~~~~~l~~~-----------~~~~~~~~SpD-G~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~----~~~~~~~~~~~ 297 (1045)
T 1k32_A 236 KDLRKHTSF-----------TDYYPRHLNTD-GRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLE----SPEDRIISIPS 297 (1045)
T ss_dssp CSCEECCCC-----------CSSCEEEEEES-SSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCC----BCCSEEEECGG
T ss_pred CcceEecCC-----------CCcceeeEcCC-CCEEEEE-eCCEEEEecCCceEee-eeccCccc----ccccccccccc
Confidence 233333211 13566799998 6777776 5899999998443321 10000000 00001123456
Q ss_pred eEEEEEc-CCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCC------cccCCcee
Q 009266 264 ITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD------VRIAPQVY 336 (538)
Q Consensus 264 i~~~~~s-~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 336 (538)
+.+++|+ |+|++|++++.+.|++|++..+.... +...+. .......++ ++..++..+..... .......+
T Consensus 298 v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l 374 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLR-IRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF 374 (1045)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSC-EEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred cceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCc-ceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe
Confidence 8899999 99999999998899999987654322 221111 012222333 44333322211000 01112233
Q ss_pred eccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCC---------
Q 009266 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES--------- 407 (538)
Q Consensus 337 ~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--------- 407 (538)
.+|... +..++| +|+|++|++++.++.|++|++.+++....+.+|...+.+++|+|+|++||+++.++
T Consensus 375 ~~~~~~--~~~~~~-SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 375 EENLGN--VFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp CCCCCS--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred cCCccc--eeeeEE-CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 344443 788998 99999999999999999999999998888888999999999999999999887754
Q ss_pred -ceEEecCCCCcccccCccceeeeecc--cCc-eeeeccCCCCCcee
Q 009266 408 -DIKILTPNAADRATLPTNIEQVLIPD--HIR-WFALGDDDDGDYYF 450 (538)
Q Consensus 408 -~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~d~~~~~~ 450 (538)
.|++|++.+++...+..|...+..+. +++ .|+.++..+....+
T Consensus 452 ~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 452 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp EEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred CeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 89999999888777777766665554 666 77777776654443
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=6e-28 Score=250.39 Aligned_cols=339 Identities=10% Similarity=-0.001 Sum_probs=224.3
Q ss_pred CCCCCCceEEeecc-CC-----ceEEeeeccCceeccccchhhc-ccccceEE---eeeeeEEcCCcCcEEEEEEcCCCC
Q 009266 5 SNNNNNKRARTSVD-KA-----LVDVWLRELGQLSTRNFALRRR-ASEDLVLR---LGIYAKLDKHRGCVNTVSFNTDGD 74 (538)
Q Consensus 5 ~~~~~~~~l~t~~~-d~-----~v~iwd~~~g~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~g~ 74 (538)
-++|++++|++++. ++ .|++|++.+|+........... .+...... .+....+. ....|.+++|||+|+
T Consensus 43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTGIVDYQWSPDAQ 121 (741)
T ss_dssp EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEECTTSS
T ss_pred eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccCcceeEECCCCC
Confidence 36889999999988 88 9999999988764221100000 00000000 00000000 013488999999999
Q ss_pred EEEEecCCCeEEEEECCCCc--eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC-
Q 009266 75 ILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG- 151 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~- 151 (538)
+|++++. +.|++|++.++. .+..+ ..|...+..++|+| +|++|++++. +.|++|++.+++.... ...+..
T Consensus 122 ~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SP--DG~~la~~~~-~~i~~~d~~~g~~~~~--~~~~~~~ 194 (741)
T 2ecf_A 122 RLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSP--KGGFVSFIRG-RNLWVIDLASGRQMQL--TADGSTT 194 (741)
T ss_dssp EEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECT--TSSEEEEEET-TEEEEEETTTTEEEEC--CCCCCSS
T ss_pred EEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCC--CCCEEEEEeC-CcEEEEecCCCCEEEe--ccCCccc
Confidence 9999887 899999999872 33444 57788899999999 9999999884 6999999988765433 222322
Q ss_pred ---------------CcEEEEEcCCCCcEEEEEcCCC---------------------------------cEEEEecCC-
Q 009266 152 ---------------RAHKLAIEPGSPHVFYTCGEDG---------------------------------LVQHFDLRT- 182 (538)
Q Consensus 152 ---------------~v~~~~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~~~- 182 (538)
.+..++|+|++ ++|++++.++ .|++|++.+
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred eeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 14789999999 4566665554 788999988
Q ss_pred CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC-----CCeEEEEEcCCccccCCCCCCCCCcccCCCCcc
Q 009266 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (538)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (538)
++........ .+...+..++| |+ +++|++++. +..|++||+.+++.... ..
T Consensus 274 ~~~~~~~~~~--------~~~~~~~~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~--------------~~ 329 (741)
T 2ecf_A 274 AQTQWIDLGK--------EQDIYLARVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQQRVL--------------AH 329 (741)
T ss_dssp CCCEEECCCS--------CSSEEEEEEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCCEEEE--------------EE
T ss_pred CceEEecCCC--------CcceEEEEEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCceEEE--------------EE
Confidence 7654432210 13447899999 98 677776553 56899999988753211 00
Q ss_pred CCCcc---ceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCC
Q 009266 258 GDEQV---GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (538)
Q Consensus 258 ~~~~~---~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
..... .+..++|+|+|++++++. ++.++||.+... .. .
T Consensus 330 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-------------------------------------~~-~ 371 (741)
T 2ecf_A 330 ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-------------------------------------GK-A 371 (741)
T ss_dssp EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-------------------------------------SC-E
T ss_pred cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-------------------------------------CC-e
Confidence 00111 345789999999887777 456666665421 11 3
Q ss_pred ceeeccccceeeeEEE-EecCCCcEEEE-eccCC--eEEEeeccC-cceeEEeecCcceeeEEeecCCCCeEEEeecC--
Q 009266 334 QVYKGHRNCVTVKGVN-FFGPKCEYVVS-GSDCG--RIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSGIE-- 406 (538)
Q Consensus 334 ~~~~~~~~~~~i~~v~-~~s~~~~~l~~-gs~dg--~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-- 406 (538)
..+..+... +..+. | +|+|++|+. ++.++ .++||.+.. ++.+..+.. ...+..++|+|++++|+....+
T Consensus 372 ~~l~~~~~~--v~~~~~~-s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 372 AALTHGNWS--VDELLAV-DEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp EESCCSSSC--EEEEEEE-ETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred eeeeecceE--EEeEeEE-eCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 444445443 66664 6 999987754 55555 899999864 565667765 5568899999999988766544
Q ss_pred --CceEEecCCCCc
Q 009266 407 --SDIKILTPNAAD 418 (538)
Q Consensus 407 --g~v~vw~~~~~~ 418 (538)
..+.+|+..++.
T Consensus 448 ~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 448 TPPQIELFRANGEK 461 (741)
T ss_dssp EEEEEEEEETTSCE
T ss_pred CCCeEEEEEcCCCe
Confidence 468888876543
No 132
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4.7e-27 Score=209.38 Aligned_cols=207 Identities=12% Similarity=0.039 Sum_probs=152.7
Q ss_pred CCCCCC----CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEe-------eeeeEEcCCcCcEEEEEEcC-
Q 009266 4 ASNNNN----NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-------GIYAKLDKHRGCVNTVSFNT- 71 (538)
Q Consensus 4 a~~~~~----~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~- 71 (538)
.+++|+ ++.+++++. .++||.+.+|+++.+.. ...+..+++ +....+.+|...++.++|+|
T Consensus 117 la~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~-----~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 117 LFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSG-----TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp ECC------CCEEEEEEEE--EEEEEEETTTEEEEEES-----SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred EEECCCccccccEEEeCCC--eEEEEecCCCcEEEecc-----cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 356677 888888774 37788888777763311 112332222 34566778999999999999
Q ss_pred --CCCEEEEecCCCeEEEEECCCCceeeeeccCC---CCCeEEEEEeecCCCceE------------EEEeCCCcEEEee
Q 009266 72 --DGDILISGSDDRRVILWDWKTERVKLSFHSGH---NDNVFQAKIMPFTDDRSI------------VTCAADGQVRHAQ 134 (538)
Q Consensus 72 --~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~~l------------~s~~~dg~v~vwd 134 (538)
++.+||+|+.|++|+|||+.+|+++.++ .+| ...+.+++|+| +|.++ ++|+.|++|++|+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL-~g~~~~v~~v~~vafSp--dG~~lvs~s~~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKM-HIDDSYQASVCHKAYSE--MGLLFIVLSHPCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEE-ECCC---CCCEEEEEEE--TTEEEEEEC------------CCEEEEEEE
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEE-cCCCcceeeeEEEEECC--CCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence 7799999999999999999999998888 443 34678889999 99886 5677899999999
Q ss_pred cccCceeeeee---ccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 135 ILERGGVETKL---LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 135 ~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
..+++.+.... ..+|...+.+..++ + .++++++.|++|+|||+.+++++..+..+.. ..+.+++|
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~---------~vvs~vaf 334 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSD---------QHWSFVKW 334 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC-----------CCCCEEEE
T ss_pred CCCCEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCC---------CeEEEEEE
Confidence 99887765432 13666655554444 5 6899999999999999999999988864321 12456899
Q ss_pred cCCCCcEEEEEeCCCeEEEEEc
Q 009266 212 DPRNANLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~ 233 (538)
+|+ +++|++|+.|++|+||++
T Consensus 335 SPD-G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGT-DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSS-SSEEEEECTTSCEEEEEE
T ss_pred CCC-CCEEEEEECCCcEEEecC
Confidence 998 799999999999999996
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=1.3e-26 Score=239.88 Aligned_cols=313 Identities=7% Similarity=-0.034 Sum_probs=211.4
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcC---cEEEEEEcCCCCEEEEecC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISGSD 81 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~l~t~~~ 81 (538)
-++|+++++++ +.+|+|++|++.+|+.. ..+.+|.. .|.+++|||+|++||+++.
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~ 80 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVETNTST---------------------VLIEGKKIESLRAIRYEISPDREYALFSYN 80 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------EEECTTTTTTTTCSEEEECTTSSEEEEEES
T ss_pred EEcCCCcEEEE-eCCCCEEEEECCCCcEE---------------------EEeccccccccccceEEECCCCCEEEEEec
Confidence 46678887776 68999999999988763 34555654 4999999999999999876
Q ss_pred C---------CeEEEEECCCCceeeee--ccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC
Q 009266 82 D---------RRVILWDWKTERVKLSF--HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (538)
Q Consensus 82 d---------~~i~iw~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 150 (538)
+ +.|++|++.+++. ..+ ...|...+..++|+| +|++|++++. +.|++|++.+++.... ...+.
T Consensus 81 ~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~--~~~~~ 154 (723)
T 1xfd_A 81 VEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRV--VSTGK 154 (723)
T ss_dssp CCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEE--ECCCB
T ss_pred CccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEE--ecCCC
Confidence 4 7889999998876 222 134555689999999 9999999886 7999999988766543 33333
Q ss_pred CC------------------cEEEEEcCCCCcEEEEEcCCC----------------------------------cEEEE
Q 009266 151 GR------------------AHKLAIEPGSPHVFYTCGEDG----------------------------------LVQHF 178 (538)
Q Consensus 151 ~~------------------v~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iw 178 (538)
.. +.+++|+|+| +.|++++.++ .|++|
T Consensus 155 ~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 233 (723)
T 1xfd_A 155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI 233 (723)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred CCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence 32 3789999999 5667665432 79999
Q ss_pred ecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCccccCCCCCCCCCcccCCC
Q 009266 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS----DEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (538)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (538)
++.+++....+..+... ..+...+..++|+|+ +++|++... +..|++||+.+++....
T Consensus 234 d~~~~~~~~~l~~~~~~----~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~------------- 295 (723)
T 1xfd_A 234 GLNGPTHDLEMMPPDDP----RMREYYITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKK------------- 295 (723)
T ss_dssp ESSSSCCCEECCCCCCG----GGSSEEEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEE-------------
T ss_pred ECCCCceeEEeeCCccC----CCccceeEEEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEE-------------
Confidence 99888754444322100 002347899999998 677766643 35799999987753211
Q ss_pred CccCCCccce----EEEEEcCCCCEEEEE-c--CC------eEEEeec-cCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 255 NLIGDEQVGI----TGLAFSDQSELLVSY-N--DE------FIYLFTQ-DMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 255 ~~~~~~~~~i----~~~~~s~~~~~l~~~-~--~~------~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
....+...+ ..++|+|+|+.|+.. + ++ .|++|++ ..+..
T Consensus 296 -~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------------------------- 348 (723)
T 1xfd_A 296 -HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-------------------------- 348 (723)
T ss_dssp -EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS--------------------------
T ss_pred -EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc--------------------------
Confidence 001111222 367999999977654 2 44 4667773 32210
Q ss_pred CCCCCCCCcccCCceeeccccceeeeE-EEEecCCCcEEEEeccC---CeEEEeeccCcc--eeEEeec---CcceeeEE
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKG-VNFFGPKCEYVVSGSDC---GRIFIWKKKGGE--LIRVIEA---DRHVVNCI 391 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~s~~~~~l~~gs~d---g~i~iwd~~~~~--~~~~~~~---h~~~v~~~ 391 (538)
.....+..+... +.. ++| +|+|++|+..+.+ +.++||.+.... ....+.. |...+..+
T Consensus 349 ----------~~~~~l~~~~~~--~~~~~~~-spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 415 (723)
T 1xfd_A 349 ----------DNIQSITSGDWD--VTKILAY-DEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA 415 (723)
T ss_dssp ----------CCCCBSCCSSSC--EEEEEEE-ETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE
T ss_pred ----------cceeEeecCCeE--EEeeeEE-cCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEE
Confidence 001222221111 333 577 9999999765554 789999986432 3444543 56778999
Q ss_pred eecCCCCeEEEee
Q 009266 392 EPHPHSTVLASSG 404 (538)
Q Consensus 392 ~~s~~~~~l~s~~ 404 (538)
+|+|++++|+...
T Consensus 416 ~~spdg~~l~~~~ 428 (723)
T 1xfd_A 416 SFSHSMDFFLLKC 428 (723)
T ss_dssp EECTTSSEEEEEC
T ss_pred EECCCCCEEEEEc
Confidence 9999999877653
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.9e-25 Score=209.29 Aligned_cols=309 Identities=11% Similarity=0.113 Sum_probs=195.8
Q ss_pred eEEeeccCCceEEeeec-cCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC-CeEEEEE
Q 009266 12 RARTSVDKALVDVWLRE-LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD-RRVILWD 89 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d-~~i~iw~ 89 (538)
++++++.++.|++|++. +++.. .... ..|...+.+++|+|+|++|++++.+ +.|++|+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALT-------------------LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEE-------------------EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEE-------------------Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 34444889999999995 34321 1222 2477789999999999988888876 8999999
Q ss_pred CC--CCcee--eeeccCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCcee-eeeeccccCCCcEEEEEcCCCC
Q 009266 90 WK--TERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSP 163 (538)
Q Consensus 90 ~~--~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 163 (538)
+. +++.. ..+ ..+ ..+..++|+| ++++|++++. ++.|++|++..+... ....+. ....+.+++|+|++.
T Consensus 67 ~~~~~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 67 IAPDDGALTFAAES-ALP-GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNR 141 (343)
T ss_dssp ECTTTCCEEEEEEE-ECS-SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSS
T ss_pred ecCCCCceeecccc-ccC-CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCC
Confidence 97 55532 233 233 3789999999 9998877765 889999999422211 111233 334588999999995
Q ss_pred cEEEEEcCCCcEEEEecCC-CCeeeee--eecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC--ccc
Q 009266 164 HVFYTCGEDGLVQHFDLRT-GAATELF--TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKW 238 (538)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~ 238 (538)
.+++++..++.|++|++.+ ++..... ..... ....+..++|+|++..+++++..++.|++|++.. +++
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV-------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS-------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccccccC-------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 4444444889999999987 5443222 11110 1125778999998433445555899999999954 221
Q ss_pred cCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccCCCC
Q 009266 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
... ...............+..++|+|+|++|+++. ++.|++|++.....
T Consensus 215 ~~~-------~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~---------------------- 265 (343)
T 1ri6_A 215 ECV-------QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS---------------------- 265 (343)
T ss_dssp EEE-------EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC----------------------
T ss_pred EEE-------eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC----------------------
Confidence 000 00000000001134677899999998776544 56899999873100
Q ss_pred ccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-cCCeEEEeecc--Ccce--eEEeecCcceeeEE
Q 009266 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK--GGEL--IRVIEADRHVVNCI 391 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-~dg~i~iwd~~--~~~~--~~~~~~h~~~v~~~ 391 (538)
....+..+..+.. +..++| +|+|++|++++ .++.|.+|++. +++. +..+.. .....++
T Consensus 266 ------------~~~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i 328 (343)
T 1ri6_A 266 ------------VLSKEGFQPTETQ---PRGFNV-DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWV 328 (343)
T ss_dssp ------------CEEEEEEEECSSS---CCCEEE-CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEE
T ss_pred ------------ceEEeeeecCCCc---cceEEE-CCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeE
Confidence 0112222332222 678888 99999888877 67999999554 5533 344443 2356677
Q ss_pred eecCCCC
Q 009266 392 EPHPHST 398 (538)
Q Consensus 392 ~~s~~~~ 398 (538)
+|.|+.+
T Consensus 329 ~~~~~~~ 335 (343)
T 1ri6_A 329 VVNAHEG 335 (343)
T ss_dssp EEEEEC-
T ss_pred EEEcccC
Confidence 7776543
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=2.2e-25 Score=207.63 Aligned_cols=287 Identities=12% Similarity=0.088 Sum_probs=188.2
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC-CC
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-DR 83 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~-d~ 83 (538)
|....+..++++..++.|++||+.+++++ ..+..+...+ +++|+|+|++|++++. ++
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEIL---------------------NQITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEE---------------------EEEECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred EcCCCCEEEEEecCCCeEEEEeCccccee---------------------eeEEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 44444555888889999999999988875 2334455666 9999999996666554 88
Q ss_pred eEEEEECCCCce-eeeeccCCCCCeEEEEEeecCCCceEEEEeCCC---cEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 84 RVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 84 ~i~iw~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
.|.+|++.+++. ...+ ..+..++.+++|+| ++++|+++..++ .|.+|++.+++.+.. +. +...+.+++|+
T Consensus 63 ~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVVAI-QEGQSSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFIST--IP-IPYDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEEEE-EECSSCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEE--EE-CCTTEEEEEEC
T ss_pred eEEEEECCCCceeEEec-ccCCCCccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEE--EE-CCCCccceEEC
Confidence 999999999887 4444 55666666699999 999999655553 899999988876654 33 23456899999
Q ss_pred CCCCcEEEEEcCCCc-EEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccc
Q 009266 160 PGSPHVFYTCGEDGL-VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 238 (538)
|++..++++...++. |++|++.....+........ . ....+..++|+|++..+++++..++.|++|++.+++.
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~-----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-S-----GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-C-----SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-c-----CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 999666667677788 99999876433221110000 0 1112455556665222333333455555555544320
Q ss_pred cCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCcc
Q 009266 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
T Consensus 211 -------------------------------------------------------------------------------- 210 (331)
T 3u4y_A 211 -------------------------------------------------------------------------------- 210 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-cCCeEEEeeccCcce--eEEeecC----cce---e
Q 009266 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGEL--IRVIEAD----RHV---V 388 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-~dg~i~iwd~~~~~~--~~~~~~h----~~~---v 388 (538)
...+..+..+. .+..++| +|+|++|++++ .++.|.+|++.+++. +..+..+ ... +
T Consensus 211 -----------~~~~~~~~~~~---~~~~~~~-spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 211 -----------ITLLNAVGTNN---LPGTIVV-SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp -----------CEEEEEEECSS---CCCCEEE-CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred -----------cceeeeccCCC---CCceEEE-CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence 00011222111 2567888 99999776554 578899999998877 4444322 222 3
Q ss_pred eEEeecCCCCeEEEee-cCCceEEecCCCCccc
Q 009266 389 NCIEPHPHSTVLASSG-IESDIKILTPNAADRA 420 (538)
Q Consensus 389 ~~~~~s~~~~~l~s~~-~dg~v~vw~~~~~~~~ 420 (538)
..++|+|++++|++++ .++.|+||++......
T Consensus 276 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 276 NQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred cceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 5589999999876554 5679999999876543
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=1.7e-26 Score=239.43 Aligned_cols=293 Identities=13% Similarity=0.104 Sum_probs=208.3
Q ss_pred cCcEEEEEEcCCCCEEEEecC-CC-----eEEEEECCCCceeeeeccCCC------------------------CCeEEE
Q 009266 61 RGCVNTVSFNTDGDILISGSD-DR-----RVILWDWKTERVKLSFHSGHN------------------------DNVFQA 110 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~-d~-----~i~iw~~~~~~~~~~~~~~~~------------------------~~v~~l 110 (538)
...|.+++|||+|++|++++. ++ .|++|++.+++....+ ..+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 8999999998865544 3332 238899
Q ss_pred EEeecCCCceEEEEeCCCcEEEeecccCc--eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeee
Q 009266 111 KIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188 (538)
Q Consensus 111 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 188 (538)
+|+| +|++|++++. +.|++|++.++. ... .+..|...+..++|+|+| ++|++++ ++.|++|++.+++....
T Consensus 115 ~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECT--TSSEEEEEET-TEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECC--CCCEEEEEeC-CcEEEEECCCCCcceEE--EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEe
Confidence 9999 9999999987 999999998772 222 266778889999999999 5677766 46899999998766544
Q ss_pred eeecccCCCCCc------ceeeeeEEEEEcCCCCcEEEEEeCCC---------------------------------eEE
Q 009266 189 FTCRPIDDRRNY------MTVVNLNAIAIDPRNANLFAVAGSDE---------------------------------YTR 229 (538)
Q Consensus 189 ~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg---------------------------------~v~ 229 (538)
..........++ .....+..++|+|+ +++|++++.++ .|+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 332110000000 00011478999998 67777776655 788
Q ss_pred EEEcCC-ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC------CeEEEeeccCCCCCCCCCCCC
Q 009266 230 LYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND------EFIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 230 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~ 302 (538)
+|++.+ ++.... .....+...+..++| |+|++|+++.. ..|++|++.++
T Consensus 267 ~~d~~~~~~~~~~-------------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g---------- 322 (741)
T 2ecf_A 267 VISPAEQAQTQWI-------------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN---------- 322 (741)
T ss_dssp EECSSTTCCCEEE-------------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC----------
T ss_pred EEECCCCCceEEe-------------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC----------
Confidence 888877 542110 001135678999999 99998886542 36999998764
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCceeeccccc-e-eeeEEEEecCCCcEEEEeccCCeEEEeecc-CcceeE
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-V-TVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIR 379 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~-~~~~~~ 379 (538)
.....+..+... . .+..++| +|+|+++++++.+|.++||.+. .++ +.
T Consensus 323 ----------------------------~~~~~~~~~~~~~~~~~~~~~~-spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 323 ----------------------------QQRVLAHETSPTWVPLHNSLRF-LDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp ----------------------------CEEEEEEEECSSCCCCCSCCEE-CTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred ----------------------------ceEEEEEcCCCCcCCcCCceEE-CCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 222333333221 0 1457788 9999999999999987777765 455 77
Q ss_pred EeecCcceeeEE-eecCCCCeEE-EeecCC--ceEEecCCC
Q 009266 380 VIEADRHVVNCI-EPHPHSTVLA-SSGIES--DIKILTPNA 416 (538)
Q Consensus 380 ~~~~h~~~v~~~-~~s~~~~~l~-s~~~dg--~v~vw~~~~ 416 (538)
.+..|...|..+ +|+|++++|+ +++.++ .++||.+..
T Consensus 373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 788888888887 5999999775 455555 899998753
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=7.1e-26 Score=233.45 Aligned_cols=332 Identities=11% Similarity=0.068 Sum_probs=211.6
Q ss_pred CceEEeeccCCceEEeeeccCcee-ccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLS-TRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
+..+++++.++ | +||+.+|+.+ ...+.+..... ....-. ...+.+...|.+++|+|+ ++|+.+. ++.|++|
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--~l~~~~--~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~ 106 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--LMPEGC--KFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGF 106 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--TC-------------CCCEEEEETTT-TEEEEEE-TTEEEEE
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--hccchh--ccccccccCceeEEECCC-CeEEEEE-CCEEEEE
Confidence 45677777777 8 9999998763 22111110000 000000 001123367999999999 5655553 4899999
Q ss_pred ECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc-----CceeeeeeccccCC------------
Q 009266 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-----RGGVETKLLGKHQG------------ 151 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~~~~~~------------ 151 (538)
++.+++... + ..+...+.+++|+| +|++|+++ .++.|++|++.+ ++.... ...+..
T Consensus 107 d~~~~~~~~-l-~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 107 DMLARKVTY-L-FDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp ETTTTEEEE-E-ECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCCGGGC
T ss_pred ECCCCceEE-c-cCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccchhhhh
Confidence 999887643 3 35677899999999 99999985 679999999987 655432 222222
Q ss_pred --CcEEEEEcCCCCcEEEEEc---------------------------------CCCcEEEEecCCCCeeeeeeecccCC
Q 009266 152 --RAHKLAIEPGSPHVFYTCG---------------------------------EDGLVQHFDLRTGAATELFTCRPIDD 196 (538)
Q Consensus 152 --~v~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (538)
.+.+++|+|++ ++|++++ .+..|++|++.+++........
T Consensus 180 ~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---- 254 (706)
T 2z3z_A 180 FGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE---- 254 (706)
T ss_dssp TTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS----
T ss_pred cCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC----
Confidence 25899999999 5677766 4467999999988754433211
Q ss_pred CCCcceeeeeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC
Q 009266 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDE-----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (538)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 271 (538)
.+...+.+++|+|+ +++|++++.++ .|++|++.+++...... ..........+.+++|+|
T Consensus 255 ----~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~----------~~~~~~~~~~~~~~~~sp 319 (706)
T 2z3z_A 255 ----PKEKFLTNLSWSPD-ENILYVAEVNRAQNECKVNAYDAETGRFVRTLF----------VETDKHYVEPLHPLTFLP 319 (706)
T ss_dssp ----CTTCEEEEEEECTT-SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE----------EEECSSCCCCCSCCEECT
T ss_pred ----CCceeEeeEEEECC-CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE----------EccCCCeECccCCceeec
Confidence 02346899999998 67888877665 89999998872111000 000000011245689999
Q ss_pred --CCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeE-
Q 009266 272 --QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKG- 347 (538)
Q Consensus 272 --~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 347 (538)
+|++|+++. ++.++||.+... ......+..+... +..
T Consensus 320 ~~dg~~l~~~~~~g~~~l~~~~~~-------------------------------------~~~~~~l~~~~~~--v~~~ 360 (706)
T 2z3z_A 320 GSNNQFIWQSRRDGWNHLYLYDTT-------------------------------------GRLIRQVTKGEWE--VTNF 360 (706)
T ss_dssp TCSSEEEEEECTTSSCEEEEEETT-------------------------------------SCEEEECCCSSSC--EEEE
T ss_pred CCCCEEEEEEccCCccEEEEEECC-------------------------------------CCEEEecCCCCeE--EEee
Confidence 999888877 557788876521 1223344444433 555
Q ss_pred EEEecCCCcEEEEec-cCC----eEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecC----CceEEecCCCCc
Q 009266 348 VNFFGPKCEYVVSGS-DCG----RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE----SDIKILTPNAAD 418 (538)
Q Consensus 348 v~~~s~~~~~l~~gs-~dg----~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~v~vw~~~~~~ 418 (538)
++| +|+|++|+.++ .++ .|+.|++.+++ +..+. |...+.+++|+|++++|+.++.+ +.|++|++.+++
T Consensus 361 ~~~-spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 361 AGF-DPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEE-CTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eEE-cCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 677 99998876554 444 67777877765 34444 56678999999999988876544 459999998775
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=6.9e-26 Score=212.23 Aligned_cols=280 Identities=11% Similarity=0.124 Sum_probs=187.2
Q ss_pred EEEEecCCCeEEEEECC-CCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-CcEEEeecc--cCceeeeeeccccC
Q 009266 75 ILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQIL--ERGGVETKLLGKHQ 150 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-g~v~vwd~~--~~~~~~~~~~~~~~ 150 (538)
++++++.++.|++|++. ++.........|...+.+++|+| ++++|++++.+ +.|++|++. ++.......+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 44455789999999985 34322221235777899999999 99999988886 999999997 44443333343333
Q ss_pred CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC---eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCC
Q 009266 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA---ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDE 226 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg 226 (538)
.+..++|+|++..+++++..++.|++|++..+. ....+. ....+.+++|+|+ +++|++++ .++
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~s~d-g~~l~~~~~~~~ 151 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-----------GLDGCHSANISPD-NRTLWVPALKQD 151 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----------CCTTBCCCEECTT-SSEEEEEEGGGT
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-----------CCCCceEEEECCC-CCEEEEecCCCC
Confidence 789999999995454555568899999995332 222222 1124788999998 56666665 899
Q ss_pred eEEEEEcCC-ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCc
Q 009266 227 YTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPV 303 (538)
Q Consensus 227 ~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~ 303 (538)
.|++|++.+ +++.... ...........+.+++|+|++++|++++ ++.|++|++.......
T Consensus 152 ~v~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~------- 214 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQD----------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI------- 214 (343)
T ss_dssp EEEEEEECTTSCEEEEE----------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-------
T ss_pred EEEEEEecCCCceeeec----------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE-------
Confidence 999999986 4321100 0001111234678899999999765554 5689999985411000
Q ss_pred cccccccccCCCCccccCCCCCCCCcccCCceee----ccccceeeeEEEEecCCCcEEE-EeccCCeEEEeecc----C
Q 009266 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYK----GHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKK----G 374 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~v~~~s~~~~~l~-~gs~dg~i~iwd~~----~ 374 (538)
.....+. ++.....+..++| +|+|++|+ ++..++.|++|++. +
T Consensus 215 ---------------------------~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~l~v~~~~~~~i~v~d~~~~~~~ 266 (343)
T 1ri6_A 215 ---------------------------ECVQTLDMMPENFSDTRWAADIHI-TPDGRHLYACDRTASLITVFSVSEDGSV 266 (343)
T ss_dssp ---------------------------EEEEEEECSCTTCCSCCCEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred ---------------------------EEEeeccccCccccccCCccceEE-CCCCCEEEEEecCCCEEEEEEEcCCCCc
Confidence 0001111 1111223667888 99998877 55578999999998 2
Q ss_pred cceeEEeecCcceeeEEeecCCCCeEEEee-cCCceEEecCC
Q 009266 375 GELIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN 415 (538)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~v~vw~~~ 415 (538)
.+.+..+..+.. +..++|+|++++|++++ .++.|++|++.
T Consensus 267 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 267 LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred eEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 345555655554 89999999999888777 68999999554
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=1.8e-25 Score=204.74 Aligned_cols=257 Identities=12% Similarity=0.072 Sum_probs=177.5
Q ss_pred eeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-C
Q 009266 15 TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-E 93 (538)
Q Consensus 15 t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~-~ 93 (538)
.++.+++|++|++.+++.. .+..|...|.+++|+|+|++|++++ ++.|++|++.+ +
T Consensus 17 ~~~~~~~i~~~d~~~~~~~----------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR----------------------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP 73 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE----------------------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC
T ss_pred CCCcceeEEEEeCCCCcee----------------------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC
Confidence 3467899999999977753 3455889999999999999999987 78999999998 7
Q ss_pred ceeeeeccCC-CCCeEEEEEeecCCCceEEEEe--CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEc
Q 009266 94 RVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 94 ~~~~~~~~~~-~~~v~~l~~~~~~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 170 (538)
+..... ..| ...|.+++|+| ++++|++++ .++.++||.+....... ..+..+ ..+..++|+|++..+++++.
T Consensus 74 ~~~~~~-~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 74 SPEKVD-TGFATICNNDHGISP--DGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp SCEECC-CTTCCCBCSCCEECT--TSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEE
T ss_pred CceEec-cccccccccceEECC--CCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEEC
Confidence 765544 444 47889999999 999999998 34556666554222211 123333 34889999999965555888
Q ss_pred CCCcEEEEecC--CCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCccccCCCCCCCC
Q 009266 171 EDGLVQHFDLR--TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQP 247 (538)
Q Consensus 171 ~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~ 247 (538)
.++.++||++. ++... .+.. +...+.+++|+|+ +.+|++++ .++.+++|.+....
T Consensus 149 ~~~~~~l~~~~~~~~~~~-~~~~----------~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~---------- 206 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSGVET-RLTH----------GEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDG---------- 206 (297)
T ss_dssp ETTEEEEEEEETTTCCEE-ECCC----------SSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTS----------
T ss_pred CCCceEEEEEECCCCcce-Eccc----------CCCccccceECCC-CCEEEEEecCCCCccEEEECCCC----------
Confidence 89999999864 33322 2211 2235778888887 45555444 57777777765211
Q ss_pred CcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCC
Q 009266 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
T Consensus 207 -------------------------------------------------------------------------------- 206 (297)
T 2ojh_A 207 -------------------------------------------------------------------------------- 206 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCceeeccccceeeeEEEEecCCCcEEEEeccC-----------CeEEEeeccCccee--EEeecCcceeeEEeec
Q 009266 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----------GRIFIWKKKGGELI--RVIEADRHVVNCIEPH 394 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d-----------g~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s 394 (538)
.....+..+.. .+..++| +|+|++|++++.+ +.|++|++.+++.. ..+.+|...+..++|+
T Consensus 207 ---~~~~~~~~~~~--~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 280 (297)
T 2ojh_A 207 ---SSVERITDSAY--GDWFPHP-SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS 280 (297)
T ss_dssp ---SCEEECCCCSE--EEEEEEE-CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred ---CCcEEEecCCc--ccCCeEE-CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence 00011111221 2556666 7777777766654 56999999888664 4445788899999999
Q ss_pred CCCCeEEEeecCC
Q 009266 395 PHSTVLASSGIES 407 (538)
Q Consensus 395 ~~~~~l~s~~~dg 407 (538)
|++++|++++.+.
T Consensus 281 pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 281 PDGDEFAYVRYFP 293 (297)
T ss_dssp TTSSEEEEEEECC
T ss_pred CCCCEEEEEEecc
Confidence 9999998887654
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=8.9e-25 Score=234.05 Aligned_cols=280 Identities=10% Similarity=0.045 Sum_probs=213.1
Q ss_pred eeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
...+.+|...+.+++|+++ .++++++.++.++||.+.. +.....+ ..|. .+..++|+| +|++|+++. ++.|.+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~Sp--DG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNT--DGRRILFSK-GGSIYI 269 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEE--SSSCEEEEE-TTEEEE
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcC--CCCEEEEEe-CCEEEE
Confidence 3456889999999999988 6777888889999998653 3333444 4454 467789999 999999884 899999
Q ss_pred eecccCceeeeeeccc-----------cCCCcEEEEEc-CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCc
Q 009266 133 AQILERGGVETKLLGK-----------HQGRAHKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (538)
|++... .+.. +.. |...+.+++|+ |++ +.|++++ ++.|++|++.++..... ..
T Consensus 270 ~d~~~~-~l~~--l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~~-~~--------- 334 (1045)
T 1k32_A 270 FNPDTE-KIEK--IEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLKV-PE--------- 334 (1045)
T ss_dssp ECTTTC-CEEE--CCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEEC-SC---------
T ss_pred ecCCce-Eeee--eccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEEc-cC---------
Confidence 998433 2222 333 44579999999 999 5566665 78999999987764432 11
Q ss_pred ceee-eeEEEEEcCCCCcEEEEEeCCCeEE-EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEE
Q 009266 201 MTVV-NLNAIAIDPRNANLFAVAGSDEYTR-LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (538)
Q Consensus 201 ~~~~-~v~~~~~~~~~~~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 278 (538)
+.. .+..++|+ + +..|++++.++.|. +|++..++. ..+. .+...+..++|+|+|++|++
T Consensus 335 -~~~~~~~~~~~s-d-g~~l~~~s~~~~l~~~~d~~~~~~---------------~~l~-~~~~~~~~~~~SpDG~~la~ 395 (1045)
T 1k32_A 335 -PLRIRYVRRGGD-T-KVAFIHGTREGDFLGIYDYRTGKA---------------EKFE-ENLGNVFAMGVDRNGKFAVV 395 (1045)
T ss_dssp -CSCEEEEEECSS-S-EEEEEEEETTEEEEEEEETTTCCE---------------EECC-CCCCSEEEEEECTTSSEEEE
T ss_pred -CCcceEEeeeEc-C-CCeEEEEECCCceEEEEECCCCCc---------------eEec-CCccceeeeEECCCCCEEEE
Confidence 222 68899999 7 78888888888888 889876542 1122 45678999999999999998
Q ss_pred Ec-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcE
Q 009266 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (538)
Q Consensus 279 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~ 357 (538)
++ ++.|++|++.++ .....+.+|... +..++| ||+|++
T Consensus 396 ~~~~~~v~~~d~~tg--------------------------------------~~~~~~~~~~~~--v~~~~~-SpDG~~ 434 (1045)
T 1k32_A 396 ANDRFEIMTVDLETG--------------------------------------KPTVIERSREAM--ITDFTI-SDNSRF 434 (1045)
T ss_dssp EETTSEEEEEETTTC--------------------------------------CEEEEEECSSSC--CCCEEE-CTTSCE
T ss_pred ECCCCeEEEEECCCC--------------------------------------ceEEeccCCCCC--ccceEE-CCCCCe
Confidence 87 458999999863 233344466654 788998 999999
Q ss_pred EEEeccCC----------eEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 358 VVSGSDCG----------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 358 l~~gs~dg----------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
|++++.++ .|++|++.+++ +..+..|...+..++|+|+|++|++++.++..++|+..
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred EEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 99887654 89999998887 66777888889999999999999999998888888653
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.5e-25 Score=231.83 Aligned_cols=300 Identities=11% Similarity=0.078 Sum_probs=200.1
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCC---CeEEEEEeecCCCceEEEEeCC---------Cc
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAAD---------GQ 129 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~~l~s~~~d---------g~ 129 (538)
..+.+++|+|+|+++++ +.+|+|++|++.+++....+ ..|.. .|.+++|+| +|++|++++.+ +.
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECC--CCCEEEEEecCccceeecceee
Confidence 34678999999997776 78999999999998876555 55654 499999999 99999999764 78
Q ss_pred EEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCC-CCCcce------
Q 009266 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD-RRNYMT------ 202 (538)
Q Consensus 130 v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~------ 202 (538)
|.+|++.+++.........|...+..++|+|+| +.|+.++. +.|++|++.+++............ ..++..
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 889999988763332334555668999999999 46666665 799999999887765543221100 000000
Q ss_pred -eeeeEEEEEcCCCCcEEEEEeCCC----------------------------------eEEEEEcCCccccCCCCCCCC
Q 009266 203 -VVNLNAIAIDPRNANLFAVAGSDE----------------------------------YTRLYDIRKYKWDGSTDFGQP 247 (538)
Q Consensus 203 -~~~v~~~~~~~~~~~~l~~~~~dg----------------------------------~v~iwd~~~~~~~~~~~~~~~ 247 (538)
...+.+++|+|+ +++|++++.++ .|++|++.+++.....
T Consensus 171 ~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l----- 244 (723)
T 1xfd_A 171 ILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM----- 244 (723)
T ss_dssp TSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC-----
T ss_pred eccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe-----
Confidence 012378999998 67887776543 7888888776421110
Q ss_pred CcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C----CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 009266 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (538)
........+...+.+++|+|+|++|++.. . ..|++|++.++.
T Consensus 245 ----~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~----------------------------- 291 (723)
T 1xfd_A 245 ----MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV----------------------------- 291 (723)
T ss_dssp ----CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-----------------------------
T ss_pred ----eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-----------------------------
Confidence 00011112356789999999999887664 2 268999987642
Q ss_pred CCCCCCcccCCceeecc-cccee--eeEEEEecCCCcEEEE--eccCC------eEEEee-ccCcc--eeEEeecCccee
Q 009266 323 STANTDVRIAPQVYKGH-RNCVT--VKGVNFFGPKCEYVVS--GSDCG------RIFIWK-KKGGE--LIRVIEADRHVV 388 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~-~~~~~--i~~v~~~s~~~~~l~~--gs~dg------~i~iwd-~~~~~--~~~~~~~h~~~v 388 (538)
....+..+ ..... ...++| +|+|++|+. +..++ .|++|+ ..+++ ++..+..+...+
T Consensus 292 ---------~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 292 ---------CTKKHEDESEAWLHRQNEEPVF-SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp ---------EEEEEEEECSSCCCCCCCCCEE-CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred ---------ceEEEEeccCCEEeccCCCceE-cCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 22222222 22111 126777 999997775 44566 577777 34444 155555433344
Q ss_pred e-EEeecCCCCeEEEeecC---CceEEecCCC
Q 009266 389 N-CIEPHPHSTVLASSGIE---SDIKILTPNA 416 (538)
Q Consensus 389 ~-~~~~s~~~~~l~s~~~d---g~v~vw~~~~ 416 (538)
. .++|+|++++|+..+.+ +.++||.+..
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 4 47999999998766655 7899999864
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=2.8e-25 Score=207.58 Aligned_cols=279 Identities=11% Similarity=0.023 Sum_probs=200.7
Q ss_pred ceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEc-CCcC-cEEEEEEcCCCCEE-EEecCCCeEEE
Q 009266 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRG-CVNTVSFNTDGDIL-ISGSDDRRVIL 87 (538)
Q Consensus 11 ~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~s~~g~~l-~t~~~d~~i~i 87 (538)
++|++++.++.|++||+.+++.+ ..+. ++.. .+.+++|+|+|++| ++++.++.|.+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~---------------------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 60 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD---------------------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE---------------------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEE---------------------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEE
Confidence 57899999999999999988775 2232 2222 47899999999765 56667889999
Q ss_pred EECCCCceeeeeccCC----CCCeEEEEEeecCCCceEEEEe------------CCCcEEEeecccCceeeeeeccccCC
Q 009266 88 WDWKTERVKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCA------------ADGQVRHAQILERGGVETKLLGKHQG 151 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~~~~~~~ 151 (538)
|++.+++.+..+..++ ...+..++|+| ++++|++++ .++.|.+|++.+++.+.. +. ...
T Consensus 61 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~ 135 (337)
T 1pby_B 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA--FE-APR 135 (337)
T ss_dssp EETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE--EE-CCS
T ss_pred EECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEEecccccccccccccCceEEEEECCCCcEEEE--Ee-CCC
Confidence 9999998876663333 22678899999 999998886 579999999988766544 22 234
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC-----
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE----- 226 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----- 226 (538)
.+.+++|+|++. +|+++ ++.|++|++.+++....+..... ...+.|+|++..+++++...+
T Consensus 136 ~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 136 QITMLAWARDGS-KLYGL--GRDLHVMDPEAGTLVEDKPIQSW-----------EAETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp SCCCEEECTTSS-CEEEE--SSSEEEEETTTTEEEEEECSTTT-----------TTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred CcceeEECCCCC-EEEEe--CCeEEEEECCCCcEeeeeecccc-----------CCCceeCCCccEEeeeccCCCceeee
Confidence 578899999994 45555 58899999999887765543221 012267887433333322222
Q ss_pred ------------------eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEee
Q 009266 227 ------------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (538)
Q Consensus 227 ------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d 288 (538)
.|.+|++.+++.. . .....+...+.+++|+|+|++|+++ ++.|++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~-------------~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d 266 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-M-------------REVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFD 266 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E-------------EEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEE
T ss_pred eeccccccccccccccccceEEEeCCCCCce-E-------------eecCCCCCceeeEEECCCCCEEEEe-CCeEEEEE
Confidence 4689998876532 1 0111233567889999999998888 68999999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
+.++ .....+.... .+.+++| +|+|++|++++.++.|+
T Consensus 267 ~~~~--------------------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 267 LEKN--------------------------------------ASIKRVPLPH---SYYSVNV-STDGSTVWLGGALGDLA 304 (337)
T ss_dssp TTTT--------------------------------------EEEEEEECSS---CCCEEEE-CTTSCEEEEESBSSEEE
T ss_pred CCCC--------------------------------------cCcceecCCC---ceeeEEE-CCCCCEEEEEcCCCcEE
Confidence 8763 2223333222 2678898 99999999999999999
Q ss_pred EeeccCcceeEEeecCcc
Q 009266 369 IWKKKGGELIRVIEADRH 386 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~ 386 (538)
+|++.+++.+..+..+..
T Consensus 305 v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 305 AYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEETTTCCEEEEEECGGG
T ss_pred EEECcCCcEEEEEEcCCC
Confidence 999999999988876543
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=1.5e-24 Score=202.65 Aligned_cols=270 Identities=8% Similarity=0.047 Sum_probs=195.4
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCC-CeEEEEEeecCCCceEE-EEeCCCcEEEeecccCceeeeeeccc---
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGK--- 148 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~--- 148 (538)
++|++++.++.|++||+.+++.+..+..++.. .+..++|+| ++++++ ++..++.|.+|++.+++.+....+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 47899999999999999999887776433332 488999999 997665 55567899999999887765433322
Q ss_pred cCCCcEEEEEcCCCCcEEEEEc------------CCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 149 HQGRAHKLAIEPGSPHVFYTCG------------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
|...+..++|+|++ .+|+++. .++.|++|++.+++.+..+... ..+.+++|+|+ +
T Consensus 80 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----------~~~~~~~~s~d-g 146 (337)
T 1pby_B 80 RVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-----------RQITMLAWARD-G 146 (337)
T ss_dssp EEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----------SSCCCEEECTT-S
T ss_pred ccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-----------CCcceeEECCC-C
Confidence 22367889999999 4666664 5799999999988877666531 24678899998 5
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-C-------------
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E------------- 282 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~------------- 282 (538)
++|+++ ++.|++|++.+++......... ...+ +.|+|+++.|+.... +
T Consensus 147 ~~l~~~--~~~i~~~d~~~~~~~~~~~~~~-------------~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 147 SKLYGL--GRDLHVMDPEAGTLVEDKPIQS-------------WEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp SCEEEE--SSSEEEEETTTTEEEEEECSTT-------------TTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred CEEEEe--CCeEEEEECCCCcEeeeeeccc-------------cCCC---ceeCCCccEEeeeccCCCceeeeeeccccc
Confidence 666666 6899999999876432211100 0011 267888876654442 1
Q ss_pred -----------eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEe
Q 009266 283 -----------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (538)
Q Consensus 283 -----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 351 (538)
.|.+|++.++.. ....+..+.. .+.+++|
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~-------------------------------------~~~~~~~~~~--~~~~~~~- 248 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEM-------------------------------------AMREVRIMDV--FYFSTAV- 248 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCE-------------------------------------EEEEEEECSS--CEEEEEE-
T ss_pred cccccccccccceEEEeCCCCCc-------------------------------------eEeecCCCCC--ceeeEEE-
Confidence 356777665311 0122233332 3678898
Q ss_pred cCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 352 s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+|+|++|+++ ++.|++|++.+++.+..+..+ ..+.+++|+|++++|++++.++.|++|++.+++.
T Consensus 249 s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 249 NPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp CTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 9999999988 799999999999988887744 4678999999999999999999999999988764
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1.4e-23 Score=197.47 Aligned_cols=278 Identities=10% Similarity=0.070 Sum_probs=203.6
Q ss_pred CcCcEEEEEEcCCCCEEEEecC-------CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE-eCCCcEE
Q 009266 60 HRGCVNTVSFNTDGDILISGSD-------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVR 131 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~-~~dg~v~ 131 (538)
....+..++|+|+|++|++++. ++.|.+|+..+++.+..+. ....+..++|+| ++++++++ ..++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~--dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINN--TTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEET--TTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECC--CCCEEEEEecCCCEEE
Confidence 4467889999999998888764 5689999999998877763 234578899999 99866554 5579999
Q ss_pred EeecccCceeeeeeccccC-------CCcEEEEEcCCCCcEEEEE-cCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 132 HAQILERGGVETKLLGKHQ-------GRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
+|++.+++.+......... ..+.+++|+|++..+++++ +.++.|.+||+.+++....+....
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------- 184 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG---------- 184 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC----------
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC----------
Confidence 9999988776553332111 1268899999995444444 357899999999988876665221
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--C
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--D 281 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~ 281 (538)
..+..++|+|+ +++|++++.++.|.+||+.+++.......+ ...+...+.+++|+|+|++|+++. .
T Consensus 185 ~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 185 KMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLL-----------DDGKEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp TTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECC-----------CSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred CccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcC-----------CCCCCcccceEEECCCCCEEEEEeCCC
Confidence 13678899998 678888889999999999987653321110 112345688899999999776665 3
Q ss_pred CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe
Q 009266 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g 361 (538)
+.|++|++.++. ....+.... ...++| +|+|++|+++
T Consensus 253 ~~v~~~d~~~~~--------------------------------------~~~~~~~~~----~~~~~~-s~dg~~l~v~ 289 (353)
T 3vgz_A 253 AEVLVVDTRNGN--------------------------------------ILAKVAAPE----SLAVLF-NPARNEAYVT 289 (353)
T ss_dssp SEEEEEETTTCC--------------------------------------EEEEEECSS----CCCEEE-ETTTTEEEEE
T ss_pred CEEEEEECCCCc--------------------------------------EEEEEEcCC----CceEEE-CCCCCEEEEE
Confidence 589999987642 223333222 245777 9999966554
Q ss_pred -ccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCC
Q 009266 362 -SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES 407 (538)
Q Consensus 362 -s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 407 (538)
..++.|.+|++.+++.+..+..+ ..+.+++|+|++++|+++...+
T Consensus 290 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 290 HRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred ECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 46899999999999998888754 4689999999999877776654
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.7e-23 Score=196.16 Aligned_cols=287 Identities=9% Similarity=0.098 Sum_probs=184.5
Q ss_pred CCeEEEEEC--CCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC---CCcEEEeecccCceeeeeeccccCCCcEEE
Q 009266 82 DRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (538)
Q Consensus 82 d~~i~iw~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~ 156 (538)
++.|.+|.+ .+++........+...+..++|+| +|+ |++++. ++.|++|++.++.......+..+...+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp--dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA--KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT--TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc--CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 456777765 456543322235567788899999 999 655554 689999999766644433345577788999
Q ss_pred EEcCCCCcEEEEEc-CCCcEEEEecCCCCeeeeeeecccCCCC--CcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 009266 157 AIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 157 ~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 233 (538)
+|+|++. +|++++ .++.|++|++........+......... .......+.+++|+|+ ++++++...++.|++|++
T Consensus 92 a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd-g~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 92 AVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD-NRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT-SCEEEEETTTTEEEEEEE
T ss_pred EECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC-CcEEEEeCCCCEEEEEEE
Confidence 9999994 555555 7899999999633222222111100000 0001224788999998 557777778899999999
Q ss_pred C-CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCcccccccc
Q 009266 234 R-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (538)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (538)
. .+++... ..........+..++|+|+|++|+++. .+.|++|++......
T Consensus 170 ~~~g~~~~~------------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~--------------- 222 (347)
T 3hfq_A 170 SDAGQLSEQ------------SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA--------------- 222 (347)
T ss_dssp CTTSCEEEE------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE---------------
T ss_pred CCCCcEEEe------------eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc---------------
Confidence 8 3332100 000111123577899999999766654 458999998741100
Q ss_pred ccCCCCccccCCCCCCCCcccCCceeecccc----ceeeeEEEEecCCCcEEE-EeccCCeEEEeeccC---cceeEEee
Q 009266 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRN----CVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKG---GELIRVIE 382 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~v~~~s~~~~~l~-~gs~dg~i~iwd~~~---~~~~~~~~ 382 (538)
......+..... ...+..++| +|+|++|+ +...++.|.+|++.. .+.+..+.
T Consensus 223 -------------------~~~~~~~~~~~~~~~~~~~~~~i~~-spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~ 282 (347)
T 3hfq_A 223 -------------------FTQLGIVKTIPADYTAHNGAAAIRL-SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS 282 (347)
T ss_dssp -------------------EEEEEEEESSCTTCCSCCEEEEEEE-CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE
T ss_pred -------------------eEEeeeeeecCCCCCCCCcceeEEE-CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe
Confidence 000111111111 123778998 99999875 555689999999973 24556666
Q ss_pred cCcceeeEEeecCCCCeEEEeecC-CceEEe--cCCCCccc
Q 009266 383 ADRHVVNCIEPHPHSTVLASSGIE-SDIKIL--TPNAADRA 420 (538)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~d-g~v~vw--~~~~~~~~ 420 (538)
.+...+..++|+|++++|++++.+ +.|.+| +..+++..
T Consensus 283 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 283 TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 666678999999999988888764 899999 55555543
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=7.8e-24 Score=218.21 Aligned_cols=295 Identities=9% Similarity=0.063 Sum_probs=197.2
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeE
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i 85 (538)
++|+ ++++.+. ++.|++|++.++++. .+..|...+.+++|||+|++||++ .++.|
T Consensus 89 ~spd-~~~~~~~-~~~i~~~d~~~~~~~----------------------~l~~~~~~~~~~~~SpdG~~la~~-~~~~i 143 (706)
T 2z3z_A 89 DAGR-GLVVLFT-QGGLVGFDMLARKVT----------------------YLFDTNEETASLDFSPVGDRVAYV-RNHNL 143 (706)
T ss_dssp ETTT-TEEEEEE-TTEEEEEETTTTEEE----------------------EEECCTTCCTTCEECTTSSEEEEE-ETTEE
T ss_pred ECCC-CeEEEEE-CCEEEEEECCCCceE----------------------EccCCcccccCCcCCCCCCEEEEE-ECCeE
Confidence 4667 5555543 599999999987653 344567789999999999999996 67999
Q ss_pred EEEECCC-----CceeeeeccCCCCC--------------eEEEEEeecCCCceEEEEe---------------------
Q 009266 86 ILWDWKT-----ERVKLSFHSGHNDN--------------VFQAKIMPFTDDRSIVTCA--------------------- 125 (538)
Q Consensus 86 ~iw~~~~-----~~~~~~~~~~~~~~--------------v~~l~~~~~~~~~~l~s~~--------------------- 125 (538)
++|++.+ ++..... ..+... +.+++|+| +|++|++++
T Consensus 144 ~v~~~~~~~~~~g~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAIAVT-IDGTETLVYGQAVHQREFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp EEEECBCTTSCCCCCEESC-SCCBTTEEESSCCGGGCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred EEEecCcccccCCCcEEec-cCCCCCeEcccchhhhhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 9999998 7764433 333332 48999999 999999987
Q ss_pred ------------CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC-----cEEEEecCCCCeeee
Q 009266 126 ------------ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAATEL 188 (538)
Q Consensus 126 ------------~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~ 188 (538)
.+..|++|++.+++.........|...+.+++|+|++ +.|++++.++ .|++||+.+++....
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRT 299 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence 4467999999887655432223567789999999999 5677766654 899999999844333
Q ss_pred eeecccCCCCCcceeeeeEEEEEcC--CCCcEEEEEeCCCeEEEEEcC-CccccCCCCCCCCCcccCCCCccCCCccceE
Q 009266 189 FTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGIT 265 (538)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (538)
+...... . ....+.+++|+| + +++|+++..++.++||.+. .++.. ..+..+...+.
T Consensus 300 ~~~~~~~---~--~~~~~~~~~~sp~~d-g~~l~~~~~~g~~~l~~~~~~~~~~---------------~~l~~~~~~v~ 358 (706)
T 2z3z_A 300 LFVETDK---H--YVEPLHPLTFLPGSN-NQFIWQSRRDGWNHLYLYDTTGRLI---------------RQVTKGEWEVT 358 (706)
T ss_dssp EEEEECS---S--CCCCCSCCEECTTCS-SEEEEEECTTSSCEEEEEETTSCEE---------------EECCCSSSCEE
T ss_pred EEEccCC---C--eECccCCceeecCCC-CEEEEEEccCCccEEEEEECCCCEE---------------EecCCCCeEEE
Confidence 3211100 0 001246789999 8 6799999999999999876 22211 11122345566
Q ss_pred E-EEEcCCCCEEEEEc-C-C----eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec
Q 009266 266 G-LAFSDQSELLVSYN-D-E----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (538)
Q Consensus 266 ~-~~~s~~~~~l~~~~-~-~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
. ++|+|+|+.|+.++ . + .|+.|++.++. ...+.
T Consensus 359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---------------------------------------~~~l~- 398 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---------------------------------------TKDLT- 398 (706)
T ss_dssp EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---------------------------------------CEESC-
T ss_pred eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---------------------------------------ceecc-
Confidence 6 89999998776654 3 2 46666655421 12222
Q ss_pred cccceeeeEEEEecCCCcEEEEeccC----CeEEEeeccCcceeEEeecCcceeeEEeecC
Q 009266 339 HRNCVTVKGVNFFGPKCEYVVSGSDC----GRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (538)
Q Consensus 339 ~~~~~~i~~v~~~s~~~~~l~~gs~d----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (538)
+... +.+++| +|+|++|+....+ +.|++|++.+++ +..+ .+...+..+.|.+
T Consensus 399 ~~~~--~~~~~~-spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~-~~~~~~~~~~~~~ 454 (706)
T 2z3z_A 399 PESG--MHRTQL-SPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLL-EAKNPDTGYAMPE 454 (706)
T ss_dssp CSSS--EEEEEE-CTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEE-ECC------CCCC
T ss_pred CCCc--eEEEEE-CCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeec-cccchhhhcCCCC
Confidence 2232 778888 9999988876443 569999998887 4333 3333454444443
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=3.1e-24 Score=215.81 Aligned_cols=273 Identities=14% Similarity=0.068 Sum_probs=194.9
Q ss_pred cCcEEEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC---CCcEEEeecc
Q 009266 61 RGCVNTVSFNTDGDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQIL 136 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~-d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~---dg~v~vwd~~ 136 (538)
..+|++++|+|||++||+++. +|+++||.+.+++. .++...+...+..++|+| + +++++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEEEEe
Confidence 567999999999999999887 99999999966654 444333436899999999 8 77777765 4556776654
Q ss_pred c--CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 137 E--RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 137 ~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
. ...... +..+ ..+...+|+|++..++++.+..+.+.+|++.+++....... . ..+++|+|+
T Consensus 97 ~~~~g~~~~--l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-----------~--~~~~~~spD 160 (582)
T 3o4h_A 97 TSRPGEEQR--LEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-----------P--GFGFVSDIR 160 (582)
T ss_dssp TTSTTCCEE--CTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-----------S--SCEEEEEEE
T ss_pred ccCCCcccc--ccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-----------C--CceEEECCC
Confidence 4 222221 2222 23446788888866555555556666999998876554431 1 178899998
Q ss_pred CCcEEEEEeCC----CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CC--eEEEe
Q 009266 215 NANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--FIYLF 287 (538)
Q Consensus 215 ~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~--~i~~~ 287 (538)
|++|++++.+ +.|++|++.+++. ..+..+...+..++|+|+|++|+++. ++ .|++|
T Consensus 161 -G~~la~~~~~~~~~~~i~~~d~~~g~~----------------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 161 -GDLIAGLGFFGGGRVSLFTSNLSSGGL----------------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTV 223 (582)
T ss_dssp -TTEEEEEEEEETTEEEEEEEETTTCCC----------------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEE
T ss_pred -CCEEEEEEEcCCCCeEEEEEcCCCCCc----------------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEE
Confidence 7888877776 7899999987652 12234567789999999999999665 45 79999
Q ss_pred eccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccce------eeeEEEEecCCCcEEEEe
Q 009266 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV------TVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~v~~~s~~~~~l~~g 361 (538)
++.++... .+.+|.... .....+| +|+|.+++++
T Consensus 224 d~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~-spdg~~~~~~ 263 (582)
T 3o4h_A 224 DPRDGSVE---------------------------------------DLELPSKDFSSYRPTAITWLGY-LPDGRLAVVA 263 (582)
T ss_dssp CTTTCCEE---------------------------------------ECCCSCSHHHHHCCSEEEEEEE-CTTSCEEEEE
T ss_pred cCCCCcEE---------------------------------------EccCCCcChhhhhhccccceeE-cCCCcEEEEE
Confidence 98874321 223332220 0123337 9999999999
Q ss_pred ccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCC---ceEEecCCC
Q 009266 362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNA 416 (538)
Q Consensus 362 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~v~vw~~~~ 416 (538)
+.+++++||.+ ++.+. .+.+.|.+++|+ +++++++++.+. .|++|++.+
T Consensus 264 ~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 264 RREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999999999 66554 344678999999 999999888774 478888765
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=4.2e-23 Score=193.76 Aligned_cols=285 Identities=10% Similarity=0.008 Sum_probs=196.6
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc-CcEEEEEEcCCCCEE-EEecCCC
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDIL-ISGSDDR 83 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l-~t~~~d~ 83 (538)
+++++.++++++.+++|++||+.+++.+ +.+..+. ..+..++|+|+|+++ +++..++
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~ 65 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVY---------------------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 65 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEE---------------------EEEECSSCCSSCEEEECTTSSEEEEEETTTT
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEE---------------------EEEecCCCCCCceeEECCCCCEEEEEeCCCC
Confidence 4677888999999999999999988765 2333222 257899999999865 4566789
Q ss_pred eEEEEECCCCceeeeeccCC-----CCCeEEEEEeecCCCceEEEEeCC------------CcEEEeecccCceeeeeec
Q 009266 84 RVILWDWKTERVKLSFHSGH-----NDNVFQAKIMPFTDDRSIVTCAAD------------GQVRHAQILERGGVETKLL 146 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~~~l~s~~~d------------g~v~vwd~~~~~~~~~~~~ 146 (538)
.|.+|++.+++.+..+...+ ...+..++|+| +|++|++++.+ +.|.+|++.+++.......
T Consensus 66 ~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 66 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred cEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 99999999998776663233 23478999999 99999998865 8999999987543322112
Q ss_pred cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCC-------------CCc-ceeeeeEEEEEc
Q 009266 147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-------------RNY-MTVVNLNAIAID 212 (538)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~v~~~~~~ 212 (538)
..+...+.+++|+|++. + ++++. .|++||+.+++....+........ ... ........++++
T Consensus 144 ~~~~~~~~~~~~s~dg~-l-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 144 FPMPRQVYLMRAADDGS-L-YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp EECCSSCCCEEECTTSC-E-EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred ccCCCcccceeECCCCc-E-EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 22444688999999994 4 44443 499999999987766543320000 000 011134456676
Q ss_pred CCCC----------cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEcC
Q 009266 213 PRNA----------NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND 281 (538)
Q Consensus 213 ~~~~----------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 281 (538)
+++. .++......+.+++|++.. +...+.+++|+| ++++|+++ .
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~sp~dg~~l~~~-~ 274 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------------------------LTELYFTGLRSPKDPNQIYGV-L 274 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEE------------------------CSSCEEEEEECSSCTTEEEEE-E
T ss_pred CCCcCCccccccceeEEEEeccCCcEEeccccc------------------------CCCcceeeEecCCCCCEEEEE-c
Confidence 5421 1222334455566665532 234678999999 99999888 7
Q ss_pred CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe
Q 009266 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g 361 (538)
+.|++|++.++ .....+.... .+.+++| +|+|++|+++
T Consensus 275 ~~v~~~d~~~~--------------------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~~~ 312 (349)
T 1jmx_B 275 NRLAKYDLKQR--------------------------------------KLIKAANLDH---TYYCVAF-DKKGDKLYLG 312 (349)
T ss_dssp SEEEEEETTTT--------------------------------------EEEEEEECSS---CCCEEEE-CSSSSCEEEE
T ss_pred CeEEEEECccC--------------------------------------eEEEEEcCCC---CccceEE-CCCCCEEEEe
Confidence 79999998763 2223333222 2668888 9999999888
Q ss_pred ccCCeEEEeeccCcceeEEeecC
Q 009266 362 SDCGRIFIWKKKGGELIRVIEAD 384 (538)
Q Consensus 362 s~dg~i~iwd~~~~~~~~~~~~h 384 (538)
+.++.|++|++.+++.+..++.+
T Consensus 313 ~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 313 GTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SBSSEEEEEETTTTEEEEEEECS
T ss_pred cCCCeEEEEeccccceeeeeecC
Confidence 88999999999999988887754
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.92 E-value=6.6e-24 Score=219.17 Aligned_cols=324 Identities=8% Similarity=-0.053 Sum_probs=211.7
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcC---cEEEEEEcCCCCEEEEecC-
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISGSD- 81 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~l~t~~~- 81 (538)
++|++++++++ .+++|++|++.+|+.. ..+.+|.. .|.+++|||+|++||+++.
T Consensus 23 ~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~ 80 (719)
T 1z68_A 23 WISGQEYLHQS-ADNNIVLYNIETGQSY---------------------TILSNRTMKSVNASNYGLSPDRQFVYLESDY 80 (719)
T ss_dssp ESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------EEECHHHHHTTTCSEEEECTTSSEEEEEEEE
T ss_pred ECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------EEEccccccccceeeEEECCCCCeEEEEecC
Confidence 45777655555 5999999999988763 33444433 4899999999999998876
Q ss_pred --------CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCC-
Q 009266 82 --------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR- 152 (538)
Q Consensus 82 --------d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~- 152 (538)
++.|++|++.+++.+... .....+..++||| +|++|+++. ++.|++|++.++..... ...++...
T Consensus 81 ~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~~~v 154 (719)
T 1z68_A 81 SKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNGRENKI 154 (719)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CCCCBTTTE
T ss_pred ceeEEeecceEEEEEECCCCccccce--ecCcccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCCCcCCe
Confidence 689999999988763211 1124688999999 999999986 78999999988765432 12233222
Q ss_pred ----------------cEEEEEcCCCCcEEEEEcCCC----------------------------------cEEEEecCC
Q 009266 153 ----------------AHKLAIEPGSPHVFYTCGEDG----------------------------------LVQHFDLRT 182 (538)
Q Consensus 153 ----------------v~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~ 182 (538)
..+++|+|+| +.|++++.+. .|++|++.+
T Consensus 155 ~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 155 FNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp EESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred EcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 2589999999 5777766542 788999988
Q ss_pred CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC----CeEEEEE----cCCccccCCCCCCCCCcccCCC
Q 009266 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLYD----IRKYKWDGSTDFGQPADYFCPP 254 (538)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd----~~~~~~~~~~~~~~~~~~~~~~ 254 (538)
++....+.........+ +...+..++|+|+ ++++++.... ..|++|+ +.+++..
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~--------------- 295 (719)
T 1z68_A 234 PAYVGPQEVPVPAMIAS--SDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCP--------------- 295 (719)
T ss_dssp HHHHCCEECCCCHHHHT--SCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECC---------------
T ss_pred CCccceeEccCCccCCC--CcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceE---------------
Confidence 76531111110000011 3447899999998 6777764433 2488899 7666521
Q ss_pred Ccc----CCCccceE-----EEEEcCCCCEEEE--Ec-CC--eEEEeeccCCCCCCCCCCCCccccccccccCCCCcccc
Q 009266 255 NLI----GDEQVGIT-----GLAFSDQSELLVS--YN-DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 255 ~~~----~~~~~~i~-----~~~~s~~~~~l~~--~~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
.+. ..+...+. .++|+|+|+.|+. .. ++ .|++|++.++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--------------------------- 348 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--------------------------- 348 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---------------------------
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---------------------------
Confidence 111 12334444 7889999996554 32 34 57788876531
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc-----CCeEEEeeccC--cc-eeEEee----cCccee
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-----CGRIFIWKKKG--GE-LIRVIE----ADRHVV 388 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~-----dg~i~iwd~~~--~~-~~~~~~----~h~~~v 388 (538)
...+..+... +..+.+ + +++.|+..+. .+.++||.+.. +. ....+. +|...+
T Consensus 349 ------------~~~lt~~~~~--v~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~ 412 (719)
T 1z68_A 349 ------------AIQITSGKWE--AINIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQY 412 (719)
T ss_dssp ------------CEECSCSSSC--EEEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCB
T ss_pred ------------eEecccCceE--EEEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCce
Confidence 2333333332 667777 5 6766665554 47888888754 32 123333 256678
Q ss_pred eEEeecCCCCeEEEe-ecC--CceEEecCCCCcc
Q 009266 389 NCIEPHPHSTVLASS-GIE--SDIKILTPNAADR 419 (538)
Q Consensus 389 ~~~~~s~~~~~l~s~-~~d--g~v~vw~~~~~~~ 419 (538)
..+.|+|++++|+.. +.. ..+++|++.++++
T Consensus 413 ~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 413 YTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp EEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred EEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 899999999977643 333 4688999877653
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=1e-22 Score=190.88 Aligned_cols=263 Identities=10% Similarity=0.067 Sum_probs=171.1
Q ss_pred CCcCcEEEEEEcCCCCEEEEecC---CCeEEEEECCCCce--eeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEE
Q 009266 59 KHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRH 132 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g~~l~t~~~---d~~i~iw~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~v 132 (538)
.+...+..++|+|+|+ |++++. ++.|++|++.++.. +..+ ..+...+..++|+| ++++|++++ .++.|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~sp--dg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDE--ARQLVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEET--TTTEEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECC--CCCEEEEEeCCCCEEEE
Confidence 3556788899999999 555443 68999999977663 2222 45677889999999 999998888 6799999
Q ss_pred eeccc-Cceeeeeeccc---------cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecC-CCCeeeeeeecccCCCCCcc
Q 009266 133 AQILE-RGGVETKLLGK---------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYM 201 (538)
Q Consensus 133 wd~~~-~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 201 (538)
|++.. +.......+.. +...+.+++|+|++. ++++...++.|++|++. +++..........
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~------- 184 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTME------- 184 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECC-------
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-------
Confidence 99963 22222111211 123488899999995 88888888999999998 4443322211110
Q ss_pred eeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC--ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE
Q 009266 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (538)
Q Consensus 202 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (538)
....+..++|+|++..+++++..++.|++|++.. +++.....+. .... .......+..++|+|+|++|+++
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~------~~~~-~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK------TIPA-DYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE------SSCT-TCCSCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee------ecCC-CCCCCCcceeEEECCCCCEEEEE
Confidence 1114677999998433555567789999999874 3211000000 0000 00112468899999999977544
Q ss_pred c--CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcE
Q 009266 280 N--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (538)
Q Consensus 280 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~ 357 (538)
. ++.|.+|++..... ...+..+..+... +..++| +|+|++
T Consensus 258 ~~~~~~v~v~~~~~~g~-----------------------------------~~~~~~~~~~~~~--~~~~~~-spdg~~ 299 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGH-----------------------------------LTLIQQISTEGDF--PRDFDL-DPTEAF 299 (347)
T ss_dssp EETTTEEEEEEECGGGC-----------------------------------EEEEEEEECSSSC--CCEEEE-CTTSSE
T ss_pred eCCCCEEEEEEECCCCc-----------------------------------EEEeEEEecCCCC--cCeEEE-CCCCCE
Confidence 3 56899999863100 1222333333332 678998 999998
Q ss_pred EEEeccC-CeEEEe--eccCccee
Q 009266 358 VVSGSDC-GRIFIW--KKKGGELI 378 (538)
Q Consensus 358 l~~gs~d-g~i~iw--d~~~~~~~ 378 (538)
|++++.+ +.|.+| +..++++.
T Consensus 300 l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 300 VVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEcCCCcEEEEEEeCCCCeEE
Confidence 8887654 899999 55566654
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.7e-22 Score=188.58 Aligned_cols=268 Identities=8% Similarity=-0.009 Sum_probs=191.7
Q ss_pred CCCCCceEEeecc-------CCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEE-E
Q 009266 6 NNNNNKRARTSVD-------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-I 77 (538)
Q Consensus 6 ~~~~~~~l~t~~~-------d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~ 77 (538)
++|++++|++++. ++.|.+||..+++.+. .+. +...+.+++|+|+|++| +
T Consensus 48 ~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~---------------------~~~-~~~~~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 48 YSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ---------------------AIH-NDLKPFGATINNTTQTLWF 105 (353)
T ss_dssp EETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE---------------------EEE-ESSCCCSEEEETTTTEEEE
T ss_pred ECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE---------------------EEe-cCCCcceEEECCCCCEEEE
Confidence 4567777777763 5789999999888752 222 23447889999999855 5
Q ss_pred EecCCCeEEEEECCCCceeeeeccCCCC--------CeEEEEEeecCCCceEEEEe--CCCcEEEeecccCceeeeeecc
Q 009266 78 SGSDDRRVILWDWKTERVKLSFHSGHND--------NVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKLLG 147 (538)
Q Consensus 78 t~~~d~~i~iw~~~~~~~~~~~~~~~~~--------~v~~l~~~~~~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~ 147 (538)
+...++.|.+|++.+++.+..+..++.. .+.+++|+| +++++++++ .++.|.+|++.+++.+.. +.
T Consensus 106 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~--~~ 181 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTA--IQ 181 (353)
T ss_dssp EETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEE--EC
T ss_pred EecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEE--ec
Confidence 5566799999999999987776332221 278899999 999887776 478899999988876654 44
Q ss_pred ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCe
Q 009266 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (538)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 227 (538)
.+...+..++|+|++ .+|+++..++.|.+||+.+++....+..... + +...+..++|+|++..++++...++.
T Consensus 182 ~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~--~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 182 NTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDD----G--KEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp CCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCS----S--SCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred CCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----C--CCcccceEEECCCCCEEEEEeCCCCE
Confidence 455568899999999 5778888899999999999988777654211 0 12257889999984444445555699
Q ss_pred EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccc
Q 009266 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVST 305 (538)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~ 305 (538)
|.+||+.+++....... . ....++|+|+|++|+++. ++.|.+|++.++
T Consensus 255 v~~~d~~~~~~~~~~~~--------------~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------------- 304 (353)
T 3vgz_A 255 VLVVDTRNGNILAKVAA--------------P---ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY------------- 304 (353)
T ss_dssp EEEEETTTCCEEEEEEC--------------S---SCCCEEEETTTTEEEEEETTTTEEEEEETTTT-------------
T ss_pred EEEEECCCCcEEEEEEc--------------C---CCceEEECCCCCEEEEEECCCCeEEEEECCCC-------------
Confidence 99999988764322111 1 124689999999655544 569999998763
Q ss_pred cccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCC
Q 009266 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg 365 (538)
.....+.... .+..++| +|+|++|+++...+
T Consensus 305 -------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 305 -------------------------KVVKTFDTPT---HPNSLAL-SADGKTLYVSVKQK 335 (353)
T ss_dssp -------------------------EEEEEEECCS---EEEEEEE-CTTSCEEEEEEECC
T ss_pred -------------------------eEEEEEecCC---CCCeEEE-cCCCCEEEEEEccc
Confidence 2333333322 3678998 99999887766553
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=9.7e-23 Score=191.28 Aligned_cols=296 Identities=14% Similarity=0.109 Sum_probs=189.9
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEE-EEeCCCcEEEeecccCceeeee
Q 009266 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETK 144 (538)
Q Consensus 66 ~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~ 144 (538)
.+++++++.++++++.+++|++||+.+++.+..+..+....+..++|+| ++++++ ++..++.|.+|++.+++.+...
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 4578888999999999999999999999887776333323688999999 998665 4556899999999888766543
Q ss_pred ecccc----CCCcEEEEEcCCCCcEEEEEcCC------------CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 145 LLGKH----QGRAHKLAIEPGSPHVFYTCGED------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 145 ~~~~~----~~~v~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
.+... ...+..++|+|++ ++|++++.+ +.|.+||+.+++....+.... ....+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~ 152 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--------MPRQVYL 152 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--------CCSSCCC
T ss_pred EcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--------CCCcccc
Confidence 22211 2347899999999 567776654 899999998865433222111 1224788
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCc--c-----c--CCCCccCCCccceEEEEEcCCCCEEEEE
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD--Y-----F--CPPNLIGDEQVGITGLAFSDQSELLVSY 279 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~-----~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (538)
++|+|+ ++ +++++ +.|++||+.+++.......+.... . . .+.....+.......+++++++......
T Consensus 153 ~~~s~d-g~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 153 MRAADD-GS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp EEECTT-SC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred eeECCC-Cc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 999998 56 44443 349999998876543322211000 0 0 0000000001134557777655322111
Q ss_pred cCC--eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecC-CCc
Q 009266 280 NDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCE 356 (538)
Q Consensus 280 ~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~ 356 (538)
..+ .+..++..++. .....+..+.. .+..++| +| +++
T Consensus 229 ~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~--~~~~~~~-sp~dg~ 268 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGK-------------------------------------THTQEFADLTE--LYFTGLR-SPKDPN 268 (349)
T ss_dssp CEEEEEEEEEETTTCC-------------------------------------EEEEEEEECSS--CEEEEEE-CSSCTT
T ss_pred cccceeEEEEeccCCc-------------------------------------EEecccccCCC--cceeeEe-cCCCCC
Confidence 111 12224433321 00011111222 2678888 99 999
Q ss_pred EEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 357 ~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+|+++ ++.|++|++.+++.+..+..+ ..+.+++|+|++++|++++.++.|++|++.+++.
T Consensus 269 ~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 269 QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 99988 889999999999988887643 4578999999999998888899999999987654
No 153
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=2.1e-22 Score=184.19 Aligned_cols=251 Identities=12% Similarity=0.143 Sum_probs=173.8
Q ss_pred EecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc-Cceeeeeecccc-CCCcEE
Q 009266 78 SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLLGKH-QGRAHK 155 (538)
Q Consensus 78 t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~-~~~v~~ 155 (538)
+++.++.|++|++.+++... + ..|...|.+++|+| ++++|++++ ++.|++|++.+ ++.... ...+ ...+.+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~-~~~~~~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-V-WQTPELFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDPSPEKV--DTGFATICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-E-EEESSCCEEEEECT--TSSEEEEEE-TTEEEEEESSSCCSCEEC--CCTTCCCBCSC
T ss_pred CCCcceeEEEEeCCCCceee-e-ccCCcceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCCCceEe--ccccccccccc
Confidence 45678999999999887653 3 46888999999999 999999987 78999999988 665443 3344 467899
Q ss_pred EEEcCCCCcEEEEEc--CCCcEEEE--ecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 009266 156 LAIEPGSPHVFYTCG--EDGLVQHF--DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~--~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 231 (538)
++|+|++ ++|++++ .++.++|| ++.++.. ..+.. ...+..++|+|++..+++++..++.++||
T Consensus 90 ~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-----------~~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 90 HGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-----------NLPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp CEECTTS-SEEEEEECTTTSSCEEEEEETTCCCC-EECCS-----------SSSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred eEECCCC-CEEEEEEeCCCCcceEEEEECCCCce-EEeec-----------CCCccceEECCCCCEEEEEECCCCceEEE
Confidence 9999999 5777777 33445555 4444442 22221 11367788999743344477788888888
Q ss_pred EcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccc
Q 009266 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (538)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (538)
.+..... .
T Consensus 157 ~~~~~~~------------------------~------------------------------------------------ 164 (297)
T 2ojh_A 157 SMDIDSG------------------------V------------------------------------------------ 164 (297)
T ss_dssp EEETTTC------------------------C------------------------------------------------
T ss_pred EEECCCC------------------------c------------------------------------------------
Confidence 8643110 0
Q ss_pred cCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-cCCeEEEeecc-CcceeEEeecCcceee
Q 009266 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK-GGELIRVIEADRHVVN 389 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-~dg~i~iwd~~-~~~~~~~~~~h~~~v~ 389 (538)
...+..+... +.+++| +|++++|++++ .++.++||.+. .+..+..+..|...+.
T Consensus 165 ---------------------~~~~~~~~~~--~~~~~~-s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 220 (297)
T 2ojh_A 165 ---------------------ETRLTHGEGR--NDGPDY-SPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW 220 (297)
T ss_dssp ---------------------EEECCCSSSC--EEEEEE-CTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE
T ss_pred ---------------------ceEcccCCCc--cccceE-CCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC
Confidence 0011112222 677887 99999877655 58889999886 5667778888888999
Q ss_pred EEeecCCCCeEEEeecC-----------CceEEecCCCCcccccC---ccceeeeecc--cCc-eeeeccCC
Q 009266 390 CIEPHPHSTVLASSGIE-----------SDIKILTPNAADRATLP---TNIEQVLIPD--HIR-WFALGDDD 444 (538)
Q Consensus 390 ~~~~s~~~~~l~s~~~d-----------g~v~vw~~~~~~~~~~~---~~~~~~~~~~--~~~-~l~s~~~d 444 (538)
.++|+|++++|++++.+ +.|++|++.+++...+. +|...+..+. +++ .|++++.+
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 99999999999888876 56999999887654332 4444555444 555 66666554
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=2.9e-21 Score=182.05 Aligned_cols=301 Identities=11% Similarity=0.094 Sum_probs=190.6
Q ss_pred CceEEeec----cCCceEEeeec--cCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC-
Q 009266 10 NKRARTSV----DKALVDVWLRE--LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD- 82 (538)
Q Consensus 10 ~~~l~t~~----~d~~v~iwd~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d- 82 (538)
..+++.|+ .++.|++|.+. +|++. ....+ |...+..++|+|+|++|++++.+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~-------------------~~~~~--~~~~p~~l~~spdg~~l~~~~~~~ 71 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESL-------------------PLSDA--EVANPSYLIPSADGKFVYSVNEFS 71 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEE-------------------EEEEE--ECSCCCSEEECTTSSEEEEEECCS
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEE-------------------Eeecc--cCCCCceEEECCCCCEEEEEEccC
Confidence 34566664 45689999875 45542 12223 67778899999999999998875
Q ss_pred ---CeEEEEECCC--Ccee--eeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeecccCceeeee----ecc---
Q 009266 83 ---RRVILWDWKT--ERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETK----LLG--- 147 (538)
Q Consensus 83 ---~~i~iw~~~~--~~~~--~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~----~~~--- 147 (538)
+.|.+|++.. ++.. ... ..+......+++ ++++|++++ .++.|.+|++.....+... ...
T Consensus 72 ~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 72 KDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp STTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred CCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 7999998865 4432 222 234445666666 566666665 5789999999754332210 011
Q ss_pred -----ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe------ee------eeeecccCCCCCcceeeeeEEEE
Q 009266 148 -----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA------TE------LFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 148 -----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~------~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
.+...+.+++|+|+++.++++...++.|++|++..... +. .+... ....+..++
T Consensus 147 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 217 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA---------PGSGPRHLI 217 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC---------TTCCEEEEE
T ss_pred CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC---------CCCCCeEEE
Confidence 12234588999999955666666689999999876542 11 11111 122467899
Q ss_pred EcCCCCcEEEEEe-CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C--CeEEE
Q 009266 211 IDPRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D--EFIYL 286 (538)
Q Consensus 211 ~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~--~~i~~ 286 (538)
|+|+ ++++++++ .++.|++|++.++++..... ......+...+..++|+|+|++|+++. . +.|.+
T Consensus 218 ~spd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~----------~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 218 FNSD-GKFAYLINEIGGTVIAFRYADGMLDEIQT----------VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp ECTT-SSEEEEEETTTCEEEEEEEETTEEEEEEE----------EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred EcCC-CCEEEEEcCCCCeEEEEEecCCceEEeEE----------EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 9998 56666555 68999999998654311100 011112234568999999999886655 4 58999
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-cCC
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCG 365 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-~dg 365 (538)
|++..... ....+..+.. . ..+..++| +|+|++|++++ .++
T Consensus 287 ~~~~~~~g----------------------------------~~~~~~~~~~-g--~~~~~~~~-spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 287 FKVDETNG----------------------------------TLTKVGYQLT-G--IHPRNFII-TPNGKYLLVACRDTN 328 (361)
T ss_dssp EEECTTTC----------------------------------CEEEEEEEEC-S--SCCCEEEE-CTTSCEEEEEETTTT
T ss_pred EEEcCCCC----------------------------------cEEEeeEecC-C--CCCceEEE-CCCCCEEEEEECCCC
Confidence 99862100 0111222222 1 13678998 99999888877 678
Q ss_pred eEEEee--ccCcceeEEe-ecCcceeeEEeec
Q 009266 366 RIFIWK--KKGGELIRVI-EADRHVVNCIEPH 394 (538)
Q Consensus 366 ~i~iwd--~~~~~~~~~~-~~h~~~v~~~~~s 394 (538)
.|.+|. ..++++.... ..+...+.|++|.
T Consensus 329 ~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 329 VIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999965 4567665443 2234568888885
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=5e-22 Score=190.53 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=150.6
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEE----EecCC
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI----SGSDD 82 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~----t~~~d 82 (538)
++.+.++++++.++ |+||+...-.... .................+ .|...|++++|+|+|++|| +|+.|
T Consensus 45 s~~~~~l~~~~~dg-v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 45 SNKYGLVFAGGASG-LQIFPTKNLLIQN-----KPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp ETTTTEEEEEETTE-EEEEEHHHHCCCC-----CTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ecCCCEEEEECCCE-EEEEEchHhhhhc-----ccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 45677788888887 8888765221100 000000111112222223 4678899999999999999 89999
Q ss_pred CeEEEEECCCC--------cee--eeeccCCCCCeEEEEEeecCC-CceEEEEeCCCcEEEeecccCceeeeeeccccCC
Q 009266 83 RRVILWDWKTE--------RVK--LSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (538)
Q Consensus 83 ~~i~iw~~~~~--------~~~--~~~~~~~~~~v~~l~~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 151 (538)
+.|+||++.++ +.+ ...+.+|...|.+|+|+| + +.+|++++.||+|++||++++..+.. ..+|..
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~las~s~Dg~v~iwD~~~~~~~~~--~~~~~~ 193 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP--TVPSMVAVCLADGSIAVLQVTETVKVCA--TLPSTV 193 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS--SCTTEEEEEETTSCEEEEEESSSEEEEE--EECGGG
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC--CCCCEEEEEECCCeEEEEEcCCCcceee--ccCCCC
Confidence 99999998754 211 233467999999999999 7 78999999999999999998755433 556889
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE-EeCCC----
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDE---- 226 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg---- 226 (538)
.|++++|+|++ ++|++|+.||+|++|+++ ++....+..+... ...+...|.+++|+++ ..++++ +..+|
T Consensus 194 ~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~---~~~~~~~v~~v~w~~~-~~~l~~~~~~dg~~~~ 267 (434)
T 2oit_A 194 AVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY---ESDHPVRVLDVLWIGT-YVFAIVYAAADGTLET 267 (434)
T ss_dssp CEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTC---CTTSCEEEEEEEEEET-TEEEEEEEETTCCSSS
T ss_pred ceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCccc---CCCCceeEEEEEEecC-ceEEEEEccCCCccCC
Confidence 99999999998 689999999999999998 5555544433211 0113347999999996 455543 33443
Q ss_pred --eEEEEEcCCcc
Q 009266 227 --YTRLYDIRKYK 237 (538)
Q Consensus 227 --~v~iwd~~~~~ 237 (538)
.+++|++++.+
T Consensus 268 ~~~v~i~~l~~~~ 280 (434)
T 2oit_A 268 SPDVVMALLPKKE 280 (434)
T ss_dssp CCEEEEEECCCTT
T ss_pred CCceEEEEeccCC
Confidence 38999998753
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=5.6e-21 Score=180.04 Aligned_cols=303 Identities=11% Similarity=0.060 Sum_probs=186.2
Q ss_pred CCEEEEec----CCCeEEEEEC--CCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC----CcEEEeecccC--ce
Q 009266 73 GDILISGS----DDRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILER--GG 140 (538)
Q Consensus 73 g~~l~t~~----~d~~i~iw~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d----g~v~vwd~~~~--~~ 140 (538)
..+++.|+ .++.|.+|.+ .+++....... +...+..++|+| ++++|++++.+ +.|.+|++... ..
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 34555553 4568999976 45654333323 677888899999 99999999885 79999998763 33
Q ss_pred eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeee---ccc-CCCCCcceeeeeEEEEEcCCCC
Q 009266 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC---RPI-DDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~-~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
........+...+..+++ ++..++++...++.|.+|++.....+..+.. +.. ...........+.+++|+|+ +
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd-g 166 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD-G 166 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT-S
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC-C
Confidence 332223335556777887 6644555555789999999976543322211 100 00000112234688999998 5
Q ss_pred c-EEEEEeCCCeEEEEEcCCccccCCCCCCCCCccc-CCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCC
Q 009266 217 N-LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF-CPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMG 292 (538)
Q Consensus 217 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~ 292 (538)
+ ++++...++.|++|++......... ..+... ............+..++|+|+|++|+++. ++.|.+|++.++
T Consensus 167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 167 KYLLADDLGTDQIHKFNINPNANADNK---EKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTC---CCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CEEEEEeCCCCEEEEEEEcCCCCcccc---cceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 5 4555556899999998754310000 000000 00011112234578999999999877666 568999998753
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccc-ceeeeEEEEecCCCcEEEEecc--CCeEEE
Q 009266 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-CVTVKGVNFFGPKCEYVVSGSD--CGRIFI 369 (538)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~v~~~s~~~~~l~~gs~--dg~i~i 369 (538)
.. .....+..... ......++| +|+|++|+++.. ++.|.+
T Consensus 244 ~~------------------------------------~~~~~~~~~~~~~~~~~~i~~-spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 244 ML------------------------------------DEIQTVAADTVNAQGSGDIHL-SPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp EE------------------------------------EEEEEEESCSSCCCCEEEEEE-CTTSSEEEEEECSSSCEEEE
T ss_pred ce------------------------------------EEeEEEecCCCCCCCcccEEE-CCCCCEEEEECCCCCCEEEE
Confidence 10 01111111110 112568888 999999876655 489999
Q ss_pred eecc--Ccc--eeEEeecCcceeeEEeecCCCCeEEEee-cCCceEEe--cCCCCccccc
Q 009266 370 WKKK--GGE--LIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKIL--TPNAADRATL 422 (538)
Q Consensus 370 wd~~--~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~v~vw--~~~~~~~~~~ 422 (538)
|++. +++ .+..+.. ...+..++|+|++++|++++ .++.|.+| +..+++...+
T Consensus 287 ~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 9985 444 4444544 45688999999999888887 67899996 4456655433
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=6.3e-22 Score=188.65 Aligned_cols=290 Identities=12% Similarity=0.099 Sum_probs=192.8
Q ss_pred eEEcCCcCcEEE-----EEEcCCCCEEEEecC-CC--eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC
Q 009266 55 AKLDKHRGCVNT-----VSFNTDGDILISGSD-DR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (538)
Q Consensus 55 ~~~~~h~~~v~~-----~~~s~~g~~l~t~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~ 126 (538)
..+..|...... .+|+|+|++|+.++. ++ .|.+|++.+++..... .++...+..++|+| ++++|+.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~sp--dg~~l~~~~~ 100 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSP--DDDALFYVKD 100 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECT--TSSEEEEEET
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcC--CCCEEEEEeC
Confidence 456667666665 899999999998887 66 4888899888765443 56666666789999 9999999999
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEE--EEcCCCCcEEEE----------------------EcCCCcEEEEecCC
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKL--AIEPGSPHVFYT----------------------CGEDGLVQHFDLRT 182 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~s----------------------~~~dg~i~iwd~~~ 182 (538)
++.|++|++.+++.... +..+...+... .++|++ .+++. ...+..|++|++.+
T Consensus 101 ~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVV--YQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp TTEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred CCeEEEEECCCCcceee--eechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 99999999998876554 33344444333 348888 45553 22446899999999
Q ss_pred CCeeeeeeecccCCCCCcceeeeeEEEEEcC-CCCcEEEEEeCC------CeEEEEEcCCccccCCCCCCCCCcccCCCC
Q 009266 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (538)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
++...... +...+..++|+| + +..|+..... ..|.++++..... ..
T Consensus 178 g~~~~l~~-----------~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~---------------~~ 230 (388)
T 3pe7_A 178 GESTVILQ-----------ENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDARMWLINEDGTNM---------------RK 230 (388)
T ss_dssp CCEEEEEE-----------ESSCEEEEEEETTE-EEEEEEEECSCTTTSSCSEEEEETTSCCC---------------EE
T ss_pred CceEEeec-----------CCccccccEECCCC-CCEEEEEEecCCCCCcceEEEEeCCCCce---------------EE
Confidence 87655443 223578999999 8 6777666543 3677777765431 11
Q ss_pred ccCCCc-cceEEEEEcCCCCEEEEEc--CC----eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCC
Q 009266 256 LIGDEQ-VGITGLAFSDQSELLVSYN--DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (538)
Q Consensus 256 ~~~~~~-~~i~~~~~s~~~~~l~~~~--~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
+..... ..+..++|+|+|+.|+..+ .+ .|++|++.++..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~---------------------------------- 276 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN---------------------------------- 276 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE----------------------------------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce----------------------------------
Confidence 111221 3577899999999776544 22 399999887421
Q ss_pred cccCCceeeccccce-eeeEEEEecCCCcEEEEe---------ccCCeEEEeeccCcceeEEeecCcc-----------e
Q 009266 329 VRIAPQVYKGHRNCV-TVKGVNFFGPKCEYVVSG---------SDCGRIFIWKKKGGELIRVIEADRH-----------V 387 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~-~i~~v~~~s~~~~~l~~g---------s~dg~i~iwd~~~~~~~~~~~~h~~-----------~ 387 (538)
..+..+.++.... ....+.| +|+|++|+.. ..+..|++|++.+++. ..+..|.. .
T Consensus 277 --~~l~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~ 352 (388)
T 3pe7_A 277 --RQLTSMPACSHLMSNYDGSLM-VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVT 352 (388)
T ss_dssp --EEEEEECCEEEEEECTTSSEE-EEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTT
T ss_pred --EEEEcCCCceeeeecCCCCeE-ccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccC
Confidence 1111222211000 0112356 9999988754 4467899999988765 45555555 5
Q ss_pred eeEEeecCCCCeEEEee-cCCceEEecCC
Q 009266 388 VNCIEPHPHSTVLASSG-IESDIKILTPN 415 (538)
Q Consensus 388 v~~~~~s~~~~~l~s~~-~dg~v~vw~~~ 415 (538)
+..++|+|+|++|+.++ .+|...||.+.
T Consensus 353 ~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 353 HPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 78899999999777655 56777777653
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=1.9e-21 Score=186.58 Aligned_cols=209 Identities=11% Similarity=0.149 Sum_probs=153.9
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCC----------ceeee----eccCCCCCeEEEEEeecCCCceEE----
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTE----------RVKLS----FHSGHNDNVFQAKIMPFTDDRSIV---- 122 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~----------~~~~~----~~~~~~~~v~~l~~~~~~~~~~l~---- 122 (538)
...++.|++++.+.+|++++.++ |+||+.... ..+.. ....+...|++++|+| ++++|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC--DNLTLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT--TSCEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC--CCCEEEEEEe
Confidence 44689999999999999999887 899875311 00111 1123567899999999 999999
Q ss_pred EEeCCCcEEEeecccC--------cee-eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecc
Q 009266 123 TCAADGQVRHAQILER--------GGV-ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP 193 (538)
Q Consensus 123 s~~~dg~v~vwd~~~~--------~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 193 (538)
+++.|+.|+||++.+. +.+ ....+.+|...|++++|+|+.+.+|++++.||+|++||++++........
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-- 190 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-- 190 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC--
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC--
Confidence 7888999999998764 111 12346779999999999998558999999999999999998855433322
Q ss_pred cCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC
Q 009266 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (538)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 273 (538)
+...|.+++|+|+ +.+|++|+.||+|++|+++ ++..... ..+......|...+.+++|++++
T Consensus 191 --------~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~--------~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 191 --------STVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVI--------PCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp --------GGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEE--------CCCTTCCTTSCEEEEEEEEEETT
T ss_pred --------CCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-Ccccccc--------cCCcccCCCCceeEEEEEEecCc
Confidence 3347999999998 7999999999999999998 3211110 01111112345589999999999
Q ss_pred CEEEEEc--CC------eEEEeeccCC
Q 009266 274 ELLVSYN--DE------FIYLFTQDMG 292 (538)
Q Consensus 274 ~~l~~~~--~~------~i~~~d~~~~ 292 (538)
.++++.+ +| .+++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 8886654 32 3899998764
No 159
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=5.3e-21 Score=178.00 Aligned_cols=241 Identities=13% Similarity=0.132 Sum_probs=171.0
Q ss_pred EEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCce-eee
Q 009266 67 VSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGG-VET 143 (538)
Q Consensus 67 ~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~-~~~ 143 (538)
..|.+++. .+++++.++.|++|++.+++.+..+ ..+...+ .++|+| ++++|++++. ++.|.+|++.+++. ...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 34555544 5778888999999999999987776 3455566 999999 9997776665 88999999988876 333
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCCC---cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
+..+..+..+++|+|++ ++|+++..++ .|++|++.+++.+..+... ....+++|+|++..+++
T Consensus 79 --~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----------~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 79 --IQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-----------YDAVGIAISPNGNGLIL 144 (331)
T ss_dssp --EEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-----------TTEEEEEECTTSSCEEE
T ss_pred --cccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEECC-----------CCccceEECCCCCEEEE
Confidence 45555555559999999 5666555553 8999999998877766532 13588999998444556
Q ss_pred EEeCCCe-EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCC
Q 009266 221 VAGSDEY-TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP 299 (538)
Q Consensus 221 ~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~ 299 (538)
+...++. |++|++.... .+....
T Consensus 145 ~~~~~~~~i~~~~~~~~g-------------------------~~~~~~------------------------------- 168 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADG-------------------------VLFDTG------------------------------- 168 (331)
T ss_dssp EEETTTTEEEEEEECTTC-------------------------CEEEEE-------------------------------
T ss_pred EecCCCceEEEEEECCCC-------------------------cEeecC-------------------------------
Confidence 6666677 9999987421 000000
Q ss_pred CCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEE-EeccCCeEEEeeccCcce-
Q 009266 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGEL- 377 (538)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~-~gs~dg~i~iwd~~~~~~- 377 (538)
...+... . ....++| +|+|++|+ ++..++.|++|++.+++.
T Consensus 169 ---------------------------------~~~~~~~-~--~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 169 ---------------------------------QEFISGG-T--RPFNITF-TPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp ---------------------------------EEEECSS-S--SEEEEEE-CTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred ---------------------------------CccccCC-C--CccceEE-CCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 0000001 1 1567788 99999655 455689999999999988
Q ss_pred --eEEeecCcceeeEEeecCCCCeEEEe-ecCCceEEecCCCCcc
Q 009266 378 --IRVIEADRHVVNCIEPHPHSTVLASS-GIESDIKILTPNAADR 419 (538)
Q Consensus 378 --~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~v~vw~~~~~~~ 419 (538)
+..+..+ ..+..++|+|++++|+++ ..++.|.+|++.+++.
T Consensus 212 ~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 212 TLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred ceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 7777644 567899999999976555 4578899999988765
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.89 E-value=4.9e-21 Score=179.31 Aligned_cols=308 Identities=13% Similarity=0.084 Sum_probs=206.0
Q ss_pred CCCCCceEEeec------cCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEe
Q 009266 6 NNNNNKRARTSV------DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (538)
Q Consensus 6 ~~~~~~~l~t~~------~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~ 79 (538)
-+++++++++.. .+++|.+||..+++++ ..+..+..+ .++|+|+|++|+++
T Consensus 11 ~~~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~---------------------~~i~~g~~p--~i~~spdg~~lyv~ 67 (361)
T 2oiz_A 11 SAPQENRIYVMDSVFMHLTESRVHVYDYTNGKFL---------------------GMVPTAFNG--HVQVSNDGKKIYTM 67 (361)
T ss_dssp SSCGGGEEEEEECCGGGGGGCEEEEEETTTCCEE---------------------EEEECCEEE--EEEECTTSSEEEEE
T ss_pred CCCCCCEEEEECCCCCccccCeEEEEECCCCeEE---------------------EEecCCCCC--ceEECCCCCEEEEE
Confidence 345677777653 4779999999988875 344445555 89999999999887
Q ss_pred c----------CCCeEEEEECCCCceeeeeccC-----CCCCeEEEEEeecCCCceEEEEeC--CCcEEEeecccCceee
Q 009266 80 S----------DDRRVILWDWKTERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVE 142 (538)
Q Consensus 80 ~----------~d~~i~iw~~~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~~l~s~~~--dg~v~vwd~~~~~~~~ 142 (538)
+ .++.|.+||+.+++.+.++... +......++|+| +|++|+++.. ++.|.+||+.+++.+.
T Consensus 68 ~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 68 TTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVE 145 (361)
T ss_dssp EEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred EecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEE
Confidence 6 2567999999998887766322 234577899999 9999998874 5899999999886554
Q ss_pred eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
.. +. +. ....+.+.|.++..+++.+.+|.+.+|++.. ++.......... ... ...+ ..+.++|+ +..++.
T Consensus 146 ~~-i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~--~~~--~~~~-~~~~~~~~-g~~~~~ 216 (361)
T 2oiz_A 146 DV-TA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM--FSV--KDDP-IFIAPALD-KDKAHF 216 (361)
T ss_dssp EE-GG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC--SCT--TTSC-BCSCCEEC-SSEEEE
T ss_pred EE-ec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce--EcC--CCCc-eEEEeccc-CCEEEE
Confidence 30 21 11 1233567887767788899999999999865 444322110000 000 0001 12333565 455666
Q ss_pred EeCCCeEEEEEcCCccccCCCCCCCCCcccCCCC----ccCCCccceEEEEEcCCCCEEEEEc------------CCeEE
Q 009266 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN----LIGDEQVGITGLAFSDQSELLVSYN------------DEFIY 285 (538)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~------------~~~i~ 285 (538)
.+.++.|.++++........ ..+.... ...........++|+|+++.++++. .+.|.
T Consensus 217 ~~~~~~v~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~ 289 (361)
T 2oiz_A 217 VSYYGNVYSADFSGDEVKVD-------GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIW 289 (361)
T ss_dssp EBTTSEEEEEECSSSSCEEE-------EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEE
T ss_pred EeCCCeEEEEEecCCCceec-------ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEE
Confidence 67889999999865431100 0000000 0000011112378999987766543 23799
Q ss_pred EeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCC
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg 365 (538)
+||+.+ .+.+.++..+. +.+++| +|+|++|++++. +
T Consensus 290 viD~~t--------------------------------------~~~v~~i~~~~----p~~ia~-spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 290 VMDTKT--------------------------------------KQRVARIPGRD----ALSMTI-DQQRNLMLTLDG-G 325 (361)
T ss_dssp EEETTT--------------------------------------TEEEEEEECTT----CCEEEE-ETTTTEEEEECS-S
T ss_pred EEECCC--------------------------------------CcEEEEEecCC----eeEEEE-CCCCCEEEEeCC-C
Confidence 999887 44455565554 678898 999999999887 9
Q ss_pred eEEEeeccCc--ceeEEeecCcceeeEEeecCCCC
Q 009266 366 RIFIWKKKGG--ELIRVIEADRHVVNCIEPHPHST 398 (538)
Q Consensus 366 ~i~iwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~ 398 (538)
.|.|||+.++ +++.++..+......++++|+|+
T Consensus 326 ~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999999999 99988866777889999999986
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=3.9e-22 Score=205.88 Aligned_cols=291 Identities=11% Similarity=0.046 Sum_probs=191.3
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCC---CeEEEEEeecCCCceEEEEeC---------CCcEEEe
Q 009266 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAA---------DGQVRHA 133 (538)
Q Consensus 66 ~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~~l~s~~~---------dg~v~vw 133 (538)
.++|+|+|++++++ .++.|++|++.+++....+ ..|.. .+.+++||| +|++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence 78999999766655 5899999999998875544 44433 489999999 9999998876 6899999
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccC-CCCCcce-------eee
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMT-------VVN 205 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~-------~~~ 205 (538)
++.+++.+....+ ...+..++|+|+|+ .|+.+. ++.|++|++.+++........... ...++.. ...
T Consensus 96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 96 DLSNGEFVRGNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp ETTTTEECCSSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred ECCCCccccceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 9988766321112 25688999999994 566664 689999999988765432111000 0000000 011
Q ss_pred eEEEEEcCCCCcEEEEEeCCC----------------------------------eEEEEEcCCccccCCCCCCCCCccc
Q 009266 206 LNAIAIDPRNANLFAVAGSDE----------------------------------YTRLYDIRKYKWDGSTDFGQPADYF 251 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg----------------------------------~v~iwd~~~~~~~~~~~~~~~~~~~ 251 (538)
..+++|+|+ +++|++++.+. .|++|++.+++......+.
T Consensus 171 ~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~------ 243 (719)
T 1z68_A 171 KYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP------ 243 (719)
T ss_dssp SCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC------
T ss_pred cccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc------
Confidence 258999998 68888877542 7889998876532100000
Q ss_pred CCCCccCCCccceEEEEEcCCCCEEEEEcC---C--eEEEee----ccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 009266 252 CPPNLIGDEQVGITGLAFSDQSELLVSYND---E--FIYLFT----QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (538)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---~--~i~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (538)
.......+...+.+++|+|+++++++..+ + .|++|+ +.++.
T Consensus 244 -~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~----------------------------- 293 (719)
T 1z68_A 244 -VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD----------------------------- 293 (719)
T ss_dssp -CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-----------------------------
T ss_pred -CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-----------------------------
Confidence 00112245678999999999887776432 1 488888 55431
Q ss_pred CCCCCCcccCCcee----eccccceeee-----EEEEecCCCcEEEE--eccCC--eEEEeeccCcceeEEeecCcceee
Q 009266 323 STANTDVRIAPQVY----KGHRNCVTVK-----GVNFFGPKCEYVVS--GSDCG--RIFIWKKKGGELIRVIEADRHVVN 389 (538)
Q Consensus 323 ~~~~~~~~~~~~~~----~~~~~~~~i~-----~v~~~s~~~~~l~~--gs~dg--~i~iwd~~~~~~~~~~~~h~~~v~ 389 (538)
....+ .+|... +. .+.| +|+|+.|+. ...+| .|++|++.+++ ...+..+...+.
T Consensus 294 ---------~~~~~~~~~~~~~~~--~~~~~~~~~~~-spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~ 360 (719)
T 1z68_A 294 ---------CPKTQEHIEESRTGW--AGGFFVSTPVF-SYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI 360 (719)
T ss_dssp ---------CCGGGEEEEECSSSC--SSSSSCCCCEE-CTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEE
T ss_pred ---------eEEEEecccccCCce--EccccCCccEE-CCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEE
Confidence 22222 234333 33 6677 999996554 44444 67788887766 455655666677
Q ss_pred EEeecCCCCeEEEeecC-----CceEEecCCC
Q 009266 390 CIEPHPHSTVLASSGIE-----SDIKILTPNA 416 (538)
Q Consensus 390 ~~~~s~~~~~l~s~~~d-----g~v~vw~~~~ 416 (538)
.+.++ +++.|+..+.+ +.+++|.+..
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 77777 77776666554 8899998753
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=6.6e-22 Score=198.85 Aligned_cols=260 Identities=9% Similarity=0.077 Sum_probs=181.0
Q ss_pred CCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCceeeeeeccccC-CCcEEEEEcCCCCcEEEEEcC---CCcEEE
Q 009266 103 HNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGE---DGLVQH 177 (538)
Q Consensus 103 ~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~---dg~i~i 177 (538)
+..+|++++|+| ||++||+++. +|+++||.+.++.... +..|. ..+..++|+|+ ++++++.. +...++
T Consensus 20 ~~~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEE--TTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEE
T ss_pred hccchheeecCC--CCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC--eEEEEeccCCCCcceEE
Confidence 456899999999 9999999887 9999999986554432 44444 68999999998 57776664 455666
Q ss_pred EecCC--CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCC
Q 009266 178 FDLRT--GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (538)
Q Consensus 178 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
|.+.. ......+... . .+...+|+|++..++++++..+.+.+|++.+++...
T Consensus 93 ~~~~~~~~g~~~~l~~~---------~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~--------------- 146 (582)
T 3o4h_A 93 FKVNTSRPGEEQRLEAV---------K--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE--------------- 146 (582)
T ss_dssp EEEETTSTTCCEECTTS---------C--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE---------------
T ss_pred EEEeccCCCccccccCC---------C--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE---------------
Confidence 65543 2221122111 1 233557777744555555555566699998765311
Q ss_pred ccCCCccceEEEEEcCCCCEEEEEc-C----CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcc
Q 009266 256 LIGDEQVGITGLAFSDQSELLVSYN-D----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (538)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~-~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
+... .. .+++|+|+|++|++++ + ..|++|++.++
T Consensus 147 l~~~-~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g-------------------------------------- 185 (582)
T 3o4h_A 147 LARL-PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG-------------------------------------- 185 (582)
T ss_dssp EEEE-SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC--------------------------------------
T ss_pred eecC-CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC--------------------------------------
Confidence 1111 11 7899999999999765 3 46999998764
Q ss_pred cCCceeeccccceeeeEEEEecCCCcEEEEeccCC--eEEEeeccCcceeEEeecCcceeeEEe--------ecCCCCeE
Q 009266 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG--RIFIWKKKGGELIRVIEADRHVVNCIE--------PHPHSTVL 400 (538)
Q Consensus 331 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~--------~s~~~~~l 400 (538)
..+.+..|... +..++| ||+|++|+++..++ .|++|++.++++. .+..|...+..++ |+|+|.++
T Consensus 186 -~~~~l~~~~~~--~~~~~~-SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 186 -GLRVFDSGEGS--FSSASI-SPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp -CCEEECCSSCE--EEEEEE-CTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred -CceEeecCCCc--cccceE-CCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence 23456666654 789998 99999999888888 8999999998887 7778887787788 99999999
Q ss_pred EEeecCCceEEecCCCCcccccCccceeeeecc--cCceeeeccCCC
Q 009266 401 ASSGIESDIKILTPNAADRATLPTNIEQVLIPD--HIRWFALGDDDD 445 (538)
Q Consensus 401 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~ 445 (538)
++++.++.++||.+ ++...... ..+..++ ...++++++.+.
T Consensus 261 ~~~~~~g~~~l~~~--g~~~~~~~--~~v~~~~~sdg~~l~~~s~~~ 303 (582)
T 3o4h_A 261 VVARREGRSAVFID--GERVEAPQ--GNHGRVVLWRGKLVTSHTSLS 303 (582)
T ss_dssp EEEEETTEEEEEET--TEEECCCS--SEEEEEEEETTEEEEEEEETT
T ss_pred EEEEcCCcEEEEEE--CCeeccCC--CceEEEEecCCEEEEEEcCCC
Confidence 99999999999999 44332211 2232222 333666666654
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=3e-20 Score=191.75 Aligned_cols=326 Identities=8% Similarity=-0.015 Sum_probs=201.5
Q ss_pred CCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcC-----cEEEEEEcCCCCEEEEec
Q 009266 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG-----CVNTVSFNTDGDILISGS 80 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~g~~l~t~~ 80 (538)
+.|++++|+++ +++|++|++.+|+.. ..+.+|.. ....++|||+|++|+.++
T Consensus 24 w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~ 80 (740)
T 4a5s_A 24 WISDHEYLYKQ--ENNILVFNAEYGNSS---------------------VFLENSTFDEFGHSINDYSISPDGQFILLEY 80 (740)
T ss_dssp ECSSSEEEEEE--TTEEEEEETTTCCEE---------------------EEECTTTTTTCCSCCCEEEECTTSSEEEEEE
T ss_pred ECCCCcEEEEc--CCcEEEEECCCCceE---------------------EEEechhhhhhcccccceEECCCCCEEEEEE
Confidence 46788888886 899999999998863 33555543 234588999999999988
Q ss_pred CC---------CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC
Q 009266 81 DD---------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (538)
Q Consensus 81 ~d---------~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 151 (538)
.+ +.+.||++.+++.. .+ ..|...+..++||| +|+.||.+. ++.|++|++.++..... +..++..
T Consensus 81 ~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~~~~~~~~~~SP--dG~~la~~~-~~~i~~~~~~~~~~~~l-t~~g~~~ 154 (740)
T 4a5s_A 81 NYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSP--VGHKLAYVW-NNDIYVKIEPNLPSYRI-TWTGKED 154 (740)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CSCCBTT
T ss_pred CCeeeEEEccceEEEEEECCCCcEE-Ec-ccCCCcceeeEECC--CCCEEEEEE-CCeEEEEECCCCceEEE-cCCCCcc
Confidence 75 56779999998864 33 56778899999999 999999885 68999999987765432 2233322
Q ss_pred C-----------------cEEEEEcCCCCcEEEEEcCCC------------------------------------cEEEE
Q 009266 152 R-----------------AHKLAIEPGSPHVFYTCGEDG------------------------------------LVQHF 178 (538)
Q Consensus 152 ~-----------------v~~~~~~~~~~~~l~s~~~dg------------------------------------~i~iw 178 (538)
. ...+.|+|+| +.|+.++.|. .|++|
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 2 2358999999 5666653221 47778
Q ss_pred ecCC---CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCcc----ccCCCCCCCC
Q 009266 179 DLRT---GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS----DEYTRLYDIRKYK----WDGSTDFGQP 247 (538)
Q Consensus 179 d~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~----~~~~~~~~~~ 247 (538)
++.+ ++.+............+ +...+..++|+|+ +++++.... +..|++|++.+++ .....
T Consensus 234 d~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~----- 305 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQITAPASMLI--GDHYLCDVTWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR----- 305 (740)
T ss_dssp ETTSCCSSSCCCEEEECCCHHHHT--SCEEEEEEEEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG-----
T ss_pred ECCCCCCCCcceEEEecCCccCCC--CCeEEEEEEEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE-----
Confidence 8877 63211111111000001 3346889999998 666555433 2379999998875 11000
Q ss_pred CcccCCCCccCCCccc-----eEEEEEcCCCCEEE-EEc--CC--eEEEeeccCCCCCCCCCCCCccccccccccCCCCc
Q 009266 248 ADYFCPPNLIGDEQVG-----ITGLAFSDQSELLV-SYN--DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~-~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (538)
......+... ....+|+|+|+.|+ ..+ +| .|++|++.++.
T Consensus 306 ------~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~------------------------ 355 (740)
T 4a5s_A 306 ------QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD------------------------ 355 (740)
T ss_dssp ------CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS------------------------
T ss_pred ------EeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc------------------------
Confidence 0000112222 23678999999776 554 33 58888877531
Q ss_pred cccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEE-Eecc----CC--eEEEeeccCcceeEEeec----Ccc
Q 009266 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSD----CG--RIFIWKKKGGELIRVIEA----DRH 386 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~-~gs~----dg--~i~iwd~~~~~~~~~~~~----h~~ 386 (538)
.+.+...... +..+.. ++++.|+ +++. .+ .|+..++..++....+.. ...
T Consensus 356 ---------------~~~lT~g~~~--v~~~~~--~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~ 416 (740)
T 4a5s_A 356 ---------------CTFITKGTWE--VIGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERC 416 (740)
T ss_dssp ---------------CEESCCSSSC--EEEEEE--ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTB
T ss_pred ---------------eEecccCCEE--EEEEEE--EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCC
Confidence 1222222221 444432 3355544 4443 23 455555554443334432 235
Q ss_pred eeeEEeecCCCCeEEEeecC---CceEEecCCCCc
Q 009266 387 VVNCIEPHPHSTVLASSGIE---SDIKILTPNAAD 418 (538)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~d---g~v~vw~~~~~~ 418 (538)
.+..+.|+|++++++..... ..+.+++..+++
T Consensus 417 ~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 417 QYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp CBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 68899999999976654433 357777776554
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=6.4e-20 Score=172.76 Aligned_cols=262 Identities=9% Similarity=0.025 Sum_probs=168.0
Q ss_pred CcCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CCceeeeeccCCCCCeEEEEEeecCCCce--EEEEe-----------
Q 009266 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRS--IVTCA----------- 125 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--l~s~~----------- 125 (538)
+...+..++|+|+|++|++++.+ .|.+|++. +++..........+.+.+++|+| +|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT--NTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC--CCCEEEEEEecCCcceecccee
Confidence 44568899999999999998887 99999997 77654332111112356689999 9994 55553
Q ss_pred --CCCcEEEeeccc-Cceeeeeec--cccCCCcEEEEEcCCCCcEEEEE-cCCCcEEEEecC-CCCeeeeeeecccCCCC
Q 009266 126 --ADGQVRHAQILE-RGGVETKLL--GKHQGRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLR-TGAATELFTCRPIDDRR 198 (538)
Q Consensus 126 --~dg~v~vwd~~~-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~ 198 (538)
.++.+.+|++.. ++....... ..+...+.+++|+|+++ +|+++ ..++.|++|++. +++..........
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~---- 189 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAP---- 189 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECS----
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEecC----
Confidence 689999999974 443322111 12456789999999994 55554 446799999998 6654322111100
Q ss_pred CcceeeeeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCC--ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCE
Q 009266 199 NYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (538)
Q Consensus 199 ~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 275 (538)
. +...+..++|+|+ +++|++++ .++.|.+|++.. +++. ..+..+...|.+
T Consensus 190 ~--~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~----------------------~~~~~~~~~~~~-- 242 (365)
T 1jof_A 190 D--PGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPV----------------------YTHHSFPLIPPG-- 242 (365)
T ss_dssp S--TTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEE----------------------EEEEEEESSCTT--
T ss_pred C--CCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEE----------------------EccceEEcCCCC--
Confidence 0 1124788899998 56666655 467888887653 2100 000001000100
Q ss_pred EEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccc----ceeeeEEE-E
Q 009266 276 LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN----CVTVKGVN-F 350 (538)
Q Consensus 276 l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~v~-~ 350 (538)
+.++.. ...+..++ |
T Consensus 243 ------------------------------------------------------------~~g~~~~~~~~~~~~~i~~~ 262 (365)
T 1jof_A 243 ------------------------------------------------------------IPDRDPETGKGLYRADVCAL 262 (365)
T ss_dssp ------------------------------------------------------------CCCBCTTTSSBSEEEEEEEE
T ss_pred ------------------------------------------------------------cCCcccccccccccccEEEE
Confidence 011110 01267888 7
Q ss_pred ecCCCcEEEEeccCC------eEEEeecc-CcceeE---EeecCcceeeEEeecC---CCCeEEEeecC-CceEEecCCC
Q 009266 351 FGPKCEYVVSGSDCG------RIFIWKKK-GGELIR---VIEADRHVVNCIEPHP---HSTVLASSGIE-SDIKILTPNA 416 (538)
Q Consensus 351 ~s~~~~~l~~gs~dg------~i~iwd~~-~~~~~~---~~~~h~~~v~~~~~s~---~~~~l~s~~~d-g~v~vw~~~~ 416 (538)
+|+|++|+++.... .|.+|++. ++++.. .+..+...+..++|+| ++++|++++.+ +.|+||++..
T Consensus 263 -spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 263 -TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp -CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred -CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 99999888766432 89999996 566543 2333555678899999 89999998864 8999999876
Q ss_pred C
Q 009266 417 A 417 (538)
Q Consensus 417 ~ 417 (538)
.
T Consensus 342 ~ 342 (365)
T 1jof_A 342 E 342 (365)
T ss_dssp T
T ss_pred h
Confidence 5
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.86 E-value=8e-20 Score=174.60 Aligned_cols=279 Identities=11% Similarity=0.039 Sum_probs=180.8
Q ss_pred cEEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCc
Q 009266 63 CVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d---~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 139 (538)
.+.+++|+|+|++|+..... ..|.+|++.+++... +...+......+.|+| +|++|+.++.++.|++|++.+++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFIST--DERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECT--TSSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECC--CCCEEEEEEcCCcEEEEECCCCC
Confidence 37888999999998876443 478899998877533 3233333334478999 99999999999999999998876
Q ss_pred eeeeeeccccCCCcEE-------------------EEEcCCCCcEEEEE-----cCCCcEEEEecCCCCeeeeeeecccC
Q 009266 140 GVETKLLGKHQGRAHK-------------------LAIEPGSPHVFYTC-----GEDGLVQHFDLRTGAATELFTCRPID 195 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (538)
.... ...+...... +.|+|++. .++.+ ..+..|++|++.+++......
T Consensus 114 ~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~----- 185 (396)
T 3c5m_A 114 EQVI--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEVIHQ----- 185 (396)
T ss_dssp EEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-----
T ss_pred cEEE--EecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEeecc-----
Confidence 5443 2222222222 35677774 33332 456789999999887655443
Q ss_pred CCCCcceeeeeEEEEEcC-CCCcEEEEEeCC------CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC-ccceEEE
Q 009266 196 DRRNYMTVVNLNAIAIDP-RNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGL 267 (538)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~ 267 (538)
....+..+.|+| + +..|+..+.+ ..|.+|++..++. ..+.... ...+..+
T Consensus 186 ------~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~---------------~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 186 ------DTAWLGHPIYRPFD-DSTVGFCHEGPHDLVDARMWLVNEDGSNV---------------RKIKEHAEGESCTHE 243 (396)
T ss_dssp ------ESSCEEEEEEETTE-EEEEEEEECSCSSSCSCCCEEEETTSCCC---------------EESSCCCTTEEEEEE
T ss_pred ------CCcccccceECCCC-CCEEEEEecCCCCCCCceEEEEECCCCce---------------eEeeccCCCccccce
Confidence 223578899999 5 5655555443 3688888765431 1111111 3357889
Q ss_pred EEcCCCCEEEEEc-C-----CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecccc
Q 009266 268 AFSDQSELLVSYN-D-----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (538)
Q Consensus 268 ~~s~~~~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (538)
+|+|+|++|+..+ . +.|++|++.++. ...+.....
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---------------------------------------~~~l~~~~~ 284 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---------------------------------------NEEVMVMPP 284 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCC---------------------------------------EEEEEECCS
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCC---------------------------------------eEEeeeCCC
Confidence 9999999776654 2 239999987631 111111111
Q ss_pred ceeeeEEEEecC-CCcEEEEec----------------cCCeEEEeeccCcceeEEeecCcc-----------eeeEEee
Q 009266 342 CVTVKGVNFFGP-KCEYVVSGS----------------DCGRIFIWKKKGGELIRVIEADRH-----------VVNCIEP 393 (538)
Q Consensus 342 ~~~i~~v~~~s~-~~~~l~~gs----------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~ 393 (538)
.. +.| +| +|++|++++ .++.|++|++.+++.. .+..+.. .+..++|
T Consensus 285 ---~~-~~~-s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~ 358 (396)
T 3c5m_A 285 ---CS-HLM-SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSF 358 (396)
T ss_dssp ---EE-EEE-ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred ---CC-CCc-cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceE
Confidence 22 666 88 999888754 3478999999887753 4554543 2567899
Q ss_pred cCCCCeEEEeec-CCceEEec--CCCCcc
Q 009266 394 HPHSTVLASSGI-ESDIKILT--PNAADR 419 (538)
Q Consensus 394 s~~~~~l~s~~~-dg~v~vw~--~~~~~~ 419 (538)
+|++++|+.++. ++...||. +.++..
T Consensus 359 s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 359 TPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 999998877664 55555555 444433
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=4.7e-20 Score=190.27 Aligned_cols=303 Identities=8% Similarity=-0.003 Sum_probs=196.6
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCC-----eEEEEEeecCCCceEEEEeCC---------C
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-----VFQAKIMPFTDDRSIVTCAAD---------G 128 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~-----v~~l~~~~~~~~~~l~s~~~d---------g 128 (538)
...+++|+|+|++|+++ ++.|++|++.++++...+ .+|... ...++||| +|++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccce
Confidence 45689999999999987 899999999999875544 566532 23478899 99999998875 5
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeec-ccCCCCCcce-----
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR-PIDDRRNYMT----- 202 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~----- 202 (538)
.+.+|++.+++... +..|...+..++|+|+|. .|+.+ .++.|++|++.++...+..... ......++..
T Consensus 93 ~~~~~d~~~~~~~~---l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT---EERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEEEETTTTEECC---SSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEEEECCCCcEEE---cccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 66799999876543 566778899999999995 55665 4689999999888754332110 0000000000
Q ss_pred --eeeeEEEEEcCCCCcEEEEEeCC-CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE
Q 009266 203 --VVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (538)
Q Consensus 203 --~~~v~~~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (538)
......+.|+|+ |+.||.++.| +.|++|.+...... . .+...+..+.+.+.|....
T Consensus 168 e~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~---------------~---~~~~~~~~~~yp~~G~~~~-- 226 (740)
T 4a5s_A 168 EVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDE---------------S---LQYPKTVRVPYPKAGAVNP-- 226 (740)
T ss_dssp HTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCST---------------T---CSSCEEEEEECCBTTSCCC--
T ss_pred hhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCC---------------C---CCCCcceeecCCCCcCcCC--
Confidence 012346899998 6777776654 45888887643210 0 1234567777777664311
Q ss_pred cCCeEEEeeccC---CCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc
Q 009266 280 NDEFIYLFTQDM---GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (538)
Q Consensus 280 ~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~ 356 (538)
...|++|++.+ +....... ......+.++.. .+..++| +|+|+
T Consensus 227 -~~~l~v~d~~~~~~~~~~~~~~------------------------------l~~~~~~~~~~~--~~~~~~w-spdg~ 272 (740)
T 4a5s_A 227 -TVKFFVVNTDSLSSVTNATSIQ------------------------------ITAPASMLIGDH--YLCDVTW-ATQER 272 (740)
T ss_dssp -EEEEEEEETTSCCSSSCCCEEE------------------------------ECCCHHHHTSCE--EEEEEEE-EETTE
T ss_pred -eeEEEEEECCCCCCCCcceEEE------------------------------ecCCccCCCCCe--EEEEEEE-eCCCe
Confidence 12689999876 42100000 000000112333 3889999 99999
Q ss_pred EEEEec----cCCeEEEeeccCcc----ee--EEe--ecCcceee-----EEeecCCCCeEE-Eeec-C--CceEEecCC
Q 009266 357 YVVSGS----DCGRIFIWKKKGGE----LI--RVI--EADRHVVN-----CIEPHPHSTVLA-SSGI-E--SDIKILTPN 415 (538)
Q Consensus 357 ~l~~gs----~dg~i~iwd~~~~~----~~--~~~--~~h~~~v~-----~~~~s~~~~~l~-s~~~-d--g~v~vw~~~ 415 (538)
+++... .+..|++|++.+++ +. ..+ ..|...|. .++|+|+|+.|+ ..+. + ..|++|++.
T Consensus 273 ~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 273 ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence 776543 33479999999987 22 222 45665554 789999999877 6653 3 458888998
Q ss_pred CCcccccCccceeee
Q 009266 416 AADRATLPTNIEQVL 430 (538)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (538)
+++...+......+.
T Consensus 353 ~~~~~~lT~g~~~v~ 367 (740)
T 4a5s_A 353 KKDCTFITKGTWEVI 367 (740)
T ss_dssp CSSCEESCCSSSCEE
T ss_pred CCceEecccCCEEEE
Confidence 887766665544443
No 167
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.85 E-value=6.5e-18 Score=165.81 Aligned_cols=332 Identities=13% Similarity=0.057 Sum_probs=225.1
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
.+.++++...+++|.++|..+++++ .++. ....+.+++|+|+|++|++++.++.|.+|
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~---------------------~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~vi 223 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIK---------------------TVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMI 223 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEE---------------------EEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEE---------------------EEEe-CCCCccceEECCCCCEEEEEcCCCeEEEE
Confidence 4456777888999999999998876 2333 23356799999999999999999999999
Q ss_pred ECC--CCceeeeeccCCCCCeEEEEEe----ecCCCceEEEEeC-CCcEEEeecccCceeeeeeccc--------cCC-C
Q 009266 89 DWK--TERVKLSFHSGHNDNVFQAKIM----PFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGK--------HQG-R 152 (538)
Q Consensus 89 ~~~--~~~~~~~~~~~~~~~v~~l~~~----~~~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~--------~~~-~ 152 (538)
|+. +++.+.++..+ .....++|+ | +|+++++++. .++|.|+|..+.+.+......+ |.. .
T Consensus 224 D~~~~t~~~v~~i~~G--~~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r 299 (567)
T 1qks_A 224 DLWMKEPTTVAEIKIG--SEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 299 (567)
T ss_dssp ETTSSSCCEEEEEECC--SEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred ECCCCCCcEeEEEecC--CCCceeEEccccCC--CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCc
Confidence 995 77777776332 346789999 8 9998888775 5999999998887766543322 222 6
Q ss_pred cEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 009266 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 232 (538)
+..+.++++++.+++.....|.|.++|....+........ .......+.|+|++..++++....+.|.++|
T Consensus 300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~---------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---------AERFLHDGGLDGSHRYFITAANARNKLVVID 370 (567)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee---------ccccccCceECCCCCEEEEEeCCCCeEEEEE
Confidence 7889999988777788888899999999876543332221 1113567899998443445555789999999
Q ss_pred cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-CCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccc
Q 009266 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (538)
+.++++......+ -...|......+ ++|+ +.++++.. ++.|.+++.........
T Consensus 371 ~~t~kl~~~i~vg----------g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~------------ 427 (567)
T 1qks_A 371 TKEGKLVAIEDTG----------GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN------------ 427 (567)
T ss_dssp TTTTEEEEEEECS----------SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT------------
T ss_pred CCCCcEEEEEecc----------CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc------------
Confidence 9998764432210 011122212222 6887 45555553 46899999876321100
Q ss_pred cccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc-------CCeEEEeeccCc-----c-
Q 009266 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-------CGRIFIWKKKGG-----E- 376 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~-------dg~i~iwd~~~~-----~- 376 (538)
..+.++++...... -..+.+ +|++++|.+... ..+|.|||+.+. .
T Consensus 428 -------------------~~kvv~~i~~~g~g--~~~i~~-~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~ 485 (567)
T 1qks_A 428 -------------------AWKILDSFPALGGG--SLFIKT-HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP 485 (567)
T ss_dssp -------------------BTSEEEEEECSCSC--CCCEEC-CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC
T ss_pred -------------------cCEEEEEEecCCCC--CEEEEe-CCCCCeEEEecCCCCCcccCceEEEEECCcccccccCC
Confidence 02233444433221 233555 999999988663 459999999877 2
Q ss_pred eeEEee--------cCcceeeEEeecCCCCeEEEee-----cCCceEEecCCCCccc
Q 009266 377 LIRVIE--------ADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRA 420 (538)
Q Consensus 377 ~~~~~~--------~h~~~v~~~~~s~~~~~l~s~~-----~dg~v~vw~~~~~~~~ 420 (538)
.+..+. .....+..+.|+|+|+.|..+. .++.|.|+|..+.+..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 486 EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 113332 1235789999999999766553 3799999999987654
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=2.6e-19 Score=170.52 Aligned_cols=268 Identities=9% Similarity=0.012 Sum_probs=176.8
Q ss_pred EEECCCCceeeeeccCCCCCeEE-----EEEeecCCCceEEEEeC-CC--cEEEeecccCceeeeeeccccCCCcEEEEE
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQ-----AKIMPFTDDRSIVTCAA-DG--QVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~-----l~~~~~~~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (538)
.++..++..+..+ ..|...... ++|+| +|++|+.++. ++ .|.+|++.+++.... ...+...+..++|
T Consensus 14 ~~~~~~g~~~~~l-t~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~ 88 (388)
T 3pe7_A 14 YQDASTGAQVTRL-TPPDVTCHRNYFYQKCFTR--DGSKLLFGGAFDGPWNYYLLDLNTQVATQL--TEGRGDNTFGGFL 88 (388)
T ss_dssp EECTTTCCEEEEC-SCTTSCEECCCTTSCCBCT--TSCEEEEEECTTSSCEEEEEETTTCEEEEC--CCSSCBCSSSCEE
T ss_pred EecCCCCcceEEe-cCCcccccchhhcCccCCC--CCCEEEEEEcCCCCceEEEEeCCCCceEEe--eeCCCCCccceEE
Confidence 3466677776665 566655555 88999 9999998887 66 388888887765543 4556556667889
Q ss_pred cCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE--EEEEcCCCCcEEEEE--------------
Q 009266 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN--AIAIDPRNANLFAVA-------------- 222 (538)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~-------------- 222 (538)
+|++ +.|+.++.++.|++|++.+++....+..+.. .+. ...++|+ +.+++..
T Consensus 89 spdg-~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~----------~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 89 SPDD-DALFYVKDGRNLMRVDLATLEENVVYQVPAE----------WVGYGTWVANSD-CTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp CTTS-SEEEEEETTTEEEEEETTTCCEEEEEECCTT----------EEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHH
T ss_pred cCCC-CEEEEEeCCCeEEEEECCCCcceeeeechhh----------cccccceeECCC-CCeeccccccCcccccccccc
Confidence 9999 6788888888999999999987666553321 222 2345887 5666632
Q ss_pred --------eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEcCC-------eEEE
Q 009266 223 --------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYNDE-------FIYL 286 (538)
Q Consensus 223 --------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~-------~i~~ 286 (538)
..+..|++|++.+++.. ....+...+..++|+| +|+.|+....+ .|++
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~----------------~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGEST----------------VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL 220 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEE----------------EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred hhhhhhccCCcceEEEEECCCCceE----------------EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence 23467999999876521 1112345688999999 99988776632 5777
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC--
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-- 364 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d-- 364 (538)
+++..+ ..+.+..+.....+..+.| +|+|++|+..+..
T Consensus 221 ~d~~~~---------------------------------------~~~~l~~~~~~~~~~~~~~-spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 221 INEDGT---------------------------------------NMRKVKTHAEGESCTHEFW-VPDGSALVYVSYLKG 260 (388)
T ss_dssp EETTSC---------------------------------------CCEESCCCCTTEEEEEEEE-CTTSSCEEEEEEETT
T ss_pred EeCCCC---------------------------------------ceEEeeeCCCCcccccceE-CCCCCEEEEEecCCC
Confidence 776542 1222333332123667788 9999987664432
Q ss_pred ---CeEEEeeccCcceeE--EeecCcce---eeEEeecCCCCeEEEe---------ecCCceEEecCCCCcccccCccce
Q 009266 365 ---GRIFIWKKKGGELIR--VIEADRHV---VNCIEPHPHSTVLASS---------GIESDIKILTPNAADRATLPTNIE 427 (538)
Q Consensus 365 ---g~i~iwd~~~~~~~~--~~~~h~~~---v~~~~~s~~~~~l~s~---------~~dg~v~vw~~~~~~~~~~~~~~~ 427 (538)
+.|++|++.+++... .+.++... +..++|+|+|+.|+.. ..+..|++|++.+++...+..+..
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (388)
T 3pe7_A 261 SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT 340 (388)
T ss_dssp CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccC
Confidence 249999999887433 33331111 2334799999987754 456789999999887766665544
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=1.3e-18 Score=162.85 Aligned_cols=269 Identities=8% Similarity=-0.004 Sum_probs=180.4
Q ss_pred CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC----------CCcEEEeecccCceeeeeeccc--
Q 009266 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVETKLLGK-- 148 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~~~-- 148 (538)
.++.|.+||..+++.+.++ ..+..+ .++|+| ++++|++++. ++.|.+||+.+.+.+....+..
T Consensus 29 ~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEE-ECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred ccCeEEEEECCCCeEEEEe-cCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 3679999999999987776 444444 899999 9999998863 5779999998877765533321
Q ss_pred --cCCCcEEEEEcCCCCcEEEEEcC--CCcEEEEecCCCCeeee-eeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 149 --HQGRAHKLAIEPGSPHVFYTCGE--DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 149 --~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
+......++|+|++ ++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|.+...+++.+
T Consensus 104 ~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~------------~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDVTAAA------------GCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEEGGGT------------TEEEEEECTTSSSEEEEEE
T ss_pred cccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEEecCC------------CcceeEEcCCCCeeEEEEC
Confidence 23457789999999 56666543 68999999999877655 4321 1233567787557888899
Q ss_pred CCCeEEEEEcCC-ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCC
Q 009266 224 SDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSS 301 (538)
Q Consensus 224 ~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~ 301 (538)
.+|.+.+|++.. ++...... . .........+ ..+.++|++..++..+ .+.|+++++......
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~--------~-~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~------ 234 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSR--------S-KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK------ 234 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEE--------C-CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE------
T ss_pred CCCcEEEEEECCCCcEeeecc--------c-cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce------
Confidence 999999999864 33210000 0 0000001111 1233456665555444 668999998643110
Q ss_pred CccccccccccCCCCccccCCCCCCCCcccCCceeec------ccc--ceeeeEEEEecCCCcEEEEecc----------
Q 009266 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG------HRN--CVTVKGVNFFGPKCEYVVSGSD---------- 363 (538)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~i~~v~~~s~~~~~l~~gs~---------- 363 (538)
....+.. +.. +.....++| +|++++++++..
T Consensus 235 ------------------------------~~~~~~~~~~~~~~~~~~p~g~~~~a~-~~dg~~lyv~~~~~~~~~~~~~ 283 (361)
T 2oiz_A 235 ------------------------------VDGPWSLLNDEDKAKNWVPGGYNLVGL-HRASGRMYVFMHPDGKEGTHKF 283 (361)
T ss_dssp ------------------------------EEEEEESCCHHHHHTTCEECCSSCEEE-ETTTTEEEEEEESSCCTTCTTC
T ss_pred ------------------------------ecccccccCccccccccccCCeeEEEE-ecCCCeEEEEEccCCCcccccC
Confidence 0000000 000 000122566 999887776543
Q ss_pred -CCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 364 -CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 364 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
.+.|.+||+.+++.+.++..+. +.+++|+|+|++|++++. +.|.|||+.++
T Consensus 284 ~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 284 PAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999999999999999877 999999999999998887 99999999988
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=4.1e-18 Score=157.76 Aligned_cols=263 Identities=14% Similarity=0.107 Sum_probs=175.9
Q ss_pred cCcEEEEEEcCCCCEEEEecCC------------------------CeEEEEECCCCceeeeeccCCCCCeEEEEEeecC
Q 009266 61 RGCVNTVSFNTDGDILISGSDD------------------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d------------------------~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 116 (538)
-+.|.+|+++|+|+++++.+.+ ++|.+|+..+++.+..+..++......|+++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-- 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-- 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence 4679999999999999988877 47999999989887766445666899999999
Q ss_pred CCceEEEEeCCCcEEEeecccCc-eeeeeec-------cccCCCcEEEEEcC-CCCcEEEEEc-CCCcEEEEecCCCCee
Q 009266 117 DDRSIVTCAADGQVRHAQILERG-GVETKLL-------GKHQGRAHKLAIEP-GSPHVFYTCG-EDGLVQHFDLRTGAAT 186 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~-------~~~~~~v~~~~~~~-~~~~~l~s~~-~dg~i~iwd~~~~~~~ 186 (538)
+|+++++...++.|++|+..... .+..... ..+...+..|+++| ++ .++++.+ .++.|++|+ ..++.+
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEc-CCCCEE
Confidence 99988888889999999986442 2221100 24455789999999 66 7778876 689999999 456655
Q ss_pred eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEE
Q 009266 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (538)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (538)
..+...................|+++|++++++++...++.|++|+..++++..... ...+...+.+
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~-------------~~~~~~~~~~ 245 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK-------------HASFGRNVFA 245 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-------------CTTTTTCEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe-------------ccccCCCcce
Confidence 544321110000000122356777777645666666677777777766443211100 0011122333
Q ss_pred EEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeee
Q 009266 267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (538)
Q Consensus 267 ~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (538)
++|+| +..+
T Consensus 246 ~~~~p-g~~~---------------------------------------------------------------------- 254 (329)
T 3fvz_A 246 ISYIP-GFLF---------------------------------------------------------------------- 254 (329)
T ss_dssp EEEET-TEEE----------------------------------------------------------------------
T ss_pred eeecC-CEEE----------------------------------------------------------------------
Confidence 33333 2111
Q ss_pred EEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee---cCcceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 347 ~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
..+|+.+++......|++|++.+++.+..+. ++...+..|+++|+|.++++...++.|++|++..
T Consensus 255 -----~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 255 -----AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -----EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred -----EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 1123333333445689999999999988873 5667789999999999899999999999999865
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=8e-19 Score=179.41 Aligned_cols=301 Identities=11% Similarity=0.036 Sum_probs=190.7
Q ss_pred EEcCCcCcEEEEEEcCCCCEEEEe--cCCCeEEEEECCCCceeeeeccCCCCCeE---------EEEEe--ecCCCce-E
Q 009266 56 KLDKHRGCVNTVSFNTDGDILISG--SDDRRVILWDWKTERVKLSFHSGHNDNVF---------QAKIM--PFTDDRS-I 121 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~g~~l~t~--~~d~~i~iw~~~~~~~~~~~~~~~~~~v~---------~l~~~--~~~~~~~-l 121 (538)
.+.+|...|..++|++++-++++. +.++...||....+.....+ ..|...+. ..+|+ | +|++ |
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SP--Dg~~~l 94 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRP--AGGPLL 94 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCS--SSSCEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeec--CCCeEE
Confidence 456789999999999887777777 66889999986545444555 45655655 56666 8 9998 7
Q ss_pred EEEeC-CCcEEEeecc--c-Cceeeeeeccc-----cCCCcEEEEEcCCCCcEEEEEcCC----------CcEEEEecCC
Q 009266 122 VTCAA-DGQVRHAQIL--E-RGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGED----------GLVQHFDLRT 182 (538)
Q Consensus 122 ~s~~~-dg~v~vwd~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~ 182 (538)
+.++. +..|.+|++. . +.. .. +.. |...+..++|+|+| +.|++++.+ ..|++|++.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~-~~--l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVP-RP--LTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCC-EE--CSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEECCCCeEEEEcCCCCCCCCC-Ee--ccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 76554 5566666665 2 332 22 333 56778999999999 567777665 5799999987
Q ss_pred ------CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC--------CeEEEEEcC-CccccCCCCCCCC
Q 009266 183 ------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIR-KYKWDGSTDFGQP 247 (538)
Q Consensus 183 ------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~iwd~~-~~~~~~~~~~~~~ 247 (538)
++....... +...+..++|+|+ +++|+.++.+ ..|++|++. +++..
T Consensus 171 ~~~~~~~~~~~l~~~----------~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-------- 231 (662)
T 3azo_A 171 SAAADRSAVRELSDD----------AHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-------- 231 (662)
T ss_dssp TTTTCGGGSEESSCS----------CSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE--------
T ss_pred CccccCCceeEEEec----------CCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCccc--------
Confidence 443322201 2235778899998 6777776644 379999998 44110
Q ss_pred CcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CC--eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
....+...+...+..++|+|+|++++++. ++ .|++|++.++.........
T Consensus 232 ----~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~----------------------- 284 (662)
T 3azo_A 232 ----DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE----------------------- 284 (662)
T ss_dssp ----EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS-----------------------
T ss_pred ----ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc-----------------------
Confidence 01122223356789999999999776666 44 5777776443211100000
Q ss_pred CCCCcccCCceeeccccc-eeeeEEEEecCCCcEEEEeccCCeEEEe--eccCcceeEEeecCcceeeEE-eecCCCCeE
Q 009266 325 ANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDCGRIFIW--KKKGGELIRVIEADRHVVNCI-EPHPHSTVL 400 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~-~~i~~v~~~s~~~~~l~~gs~dg~i~iw--d~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l 400 (538)
... ..... ..+..++| +|+++++++++. +.++|| ++.+++ +..+..|...+..+ +++++.-++
T Consensus 285 ---------~~~-~~p~w~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~ 351 (662)
T 3azo_A 285 ---------EEF-AGPLWTPGMRWFAP-LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVG 351 (662)
T ss_dssp ---------SBS-SCCCCSTTCCSEEE-CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEE
T ss_pred ---------ccc-cCccccccCceEeE-eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEE
Confidence 000 00000 00345777 899999999998 999999 544444 67777787778777 554433344
Q ss_pred EEeecCC--ceEEecCCCCccccc
Q 009266 401 ASSGIES--DIKILTPNAADRATL 422 (538)
Q Consensus 401 ~s~~~dg--~v~vw~~~~~~~~~~ 422 (538)
++++.+. .|.+|++.+++...+
T Consensus 352 ~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 352 VAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEcCCCCCCEEEEEECCCCceEEe
Confidence 5555554 455556666655443
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=1.3e-16 Score=148.40 Aligned_cols=274 Identities=14% Similarity=0.135 Sum_probs=179.9
Q ss_pred CCCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCC
Q 009266 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (538)
Q Consensus 4 a~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~ 83 (538)
..|++....++..+.++.+++|. ++. ...+..+...+.+++|+|+|++++++..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~---~~~---------------------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 66 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTIT---AEP---------------------WLEISKKGLQLEGLNFDRQGQLFLLDVFEG 66 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEEE---CEE---------------------EEEEESSCCCEEEEEECTTSCEEEEETTTC
T ss_pred eeecCCccceeEEeecccCcccc---cce---------------------eEEEeccCccccCcEECCCCCEEEEECCCC
Confidence 45666677777777788888882 332 245666777889999999999888888899
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC----CcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
.|.+|+..+++..... ..+...+.+++++| +++++++...+ +.|.+|+..++..........+...+..+++.
T Consensus 67 ~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~--dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d 143 (333)
T 2dg1_A 67 NIFKINPETKEIKRPF-VSHKANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD 143 (333)
T ss_dssp EEEEECTTTCCEEEEE-ECSSSSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred EEEEEeCCCCcEEEEe-eCCCCCcceEEECC--CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence 9999999887764433 34667899999999 99887777666 68999998876543221112344578999999
Q ss_pred CCCCcEEEEEcC------CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 009266 160 PGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (538)
Q Consensus 160 ~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 233 (538)
|++ +++++... .+.|..|+..+++...... ....+..++|+|++..++++...++.|++|++
T Consensus 144 ~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 144 SKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------NISVANGIALSTDEKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp TTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeec-----------CCCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence 998 56666543 2456666655444332221 11135678888873234455555677888877
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccC
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (538)
..... .+..+ .+ . +
T Consensus 212 ~~~g~------------------------~~~~~--~~---~----------~--------------------------- 225 (333)
T 2dg1_A 212 EDDGV------------------------TIQPF--GA---T----------I--------------------------- 225 (333)
T ss_dssp CTTSS------------------------SEEEE--EE---E----------E---------------------------
T ss_pred cCCCc------------------------Ccccc--cc---e----------E---------------------------
Confidence 53100 00000 00 0 0
Q ss_pred CCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcc------e
Q 009266 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH------V 387 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~------~ 387 (538)
...+.++ . .+..+++ +++|+++++...++.|++|+. .++.+..+..+.. .
T Consensus 226 -------------------~~~~~~~-~--~~~~i~~-d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~ 281 (333)
T 2dg1_A 226 -------------------PYYFTGH-E--GPDSCCI-DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR 281 (333)
T ss_dssp -------------------EEECCSS-S--EEEEEEE-BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred -------------------EEecCCC-C--CCCceEE-CCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccC
Confidence 0001111 1 2566887 999998888777899999998 5777777765443 6
Q ss_pred eeEEeecCCCCeEEEeecC
Q 009266 388 VNCIEPHPHSTVLASSGIE 406 (538)
Q Consensus 388 v~~~~~s~~~~~l~s~~~d 406 (538)
+.+++|+|+++.|+.++..
T Consensus 282 ~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 282 STHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CCEEEECTTSCEEEEEEEC
T ss_pred cceEEECCCCCEEEEEeCc
Confidence 8999999998777655554
No 173
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=2e-18 Score=162.53 Aligned_cols=246 Identities=10% Similarity=0.062 Sum_probs=159.8
Q ss_pred CCCCCceEEeeccCCceEEeeec-cCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCE--EEEec--
Q 009266 6 NNNNNKRARTSVDKALVDVWLRE-LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI--LISGS-- 80 (538)
Q Consensus 6 ~~~~~~~l~t~~~d~~v~iwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~--l~t~~-- 80 (538)
++|++++|++++.+ .|.+|++. +|++.. ......+ +.+.+++|+|+|++ |++++
T Consensus 47 ~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-------------------~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~ 105 (365)
T 1jof_A 47 FDHERKNIYGAAMK-KWSSFAVKSPTEIVH-------------------EASHPIG-GHPRANDADTNTRAIFLLAAKQP 105 (365)
T ss_dssp ECTTSSEEEEEEBT-EEEEEEEEETTEEEE-------------------EEEEECC-SSGGGGCTTSCCEEEEEEECSST
T ss_pred ECCCCCEEEEEccc-eEEEEEECCCCCEEE-------------------eeEeecC-CCCccEEECCCCCEEEEEEecCC
Confidence 57889999988877 99999997 676531 1111111 23556899999994 55654
Q ss_pred -----------CCCeEEEEECC-CCceeeeec---cCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecc-cCceeee
Q 009266 81 -----------DDRRVILWDWK-TERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQIL-ERGGVET 143 (538)
Q Consensus 81 -----------~d~~i~iw~~~-~~~~~~~~~---~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~-~~~~~~~ 143 (538)
.++.+++|++. .++....+. ..+...+.+++|+| +|++|+++.. ++.|++|++. +++....
T Consensus 106 ~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 106 PYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp TCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred cceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 68999999997 465443331 13556899999999 9998887764 6899999998 6654332
Q ss_pred eecc--ccCCCcEEEEEcCCCCcEEEEEc-CCCcEEEEecC--CCCeee---eeeecccCCCCCcceee------eeEEE
Q 009266 144 KLLG--KHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLR--TGAATE---LFTCRPIDDRRNYMTVV------NLNAI 209 (538)
Q Consensus 144 ~~~~--~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~--~~~~~~---~~~~~~~~~~~~~~~~~------~v~~~ 209 (538)
..+. .|...+..++|+|+++ +|+++. .++.|.+|++. +++... .+...+. ...+ +.. .+..+
T Consensus 184 ~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~i 259 (365)
T 1jof_A 184 GSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP-GIPD--RDPETGKGLYRADV 259 (365)
T ss_dssp EEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT-TCCC--BCTTTSSBSEEEEE
T ss_pred eeEecCCCCCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC-CcCC--cccccccccccccE
Confidence 2232 2456789999999994 555544 57899999875 454422 1211110 0001 111 47889
Q ss_pred E-EcCCCCcEEEEEeCC-C-----eEEEEEcC-CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC---CCCEEEE
Q 009266 210 A-IDPRNANLFAVAGSD-E-----YTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVS 278 (538)
Q Consensus 210 ~-~~~~~~~~l~~~~~d-g-----~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~ 278 (538)
+ |+|+ +++|+++... . .|++|++. ++++... ......+...+..++|+| +|++|++
T Consensus 260 ~~~spd-G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~------------~~~~~~~~~~~~~~a~sp~~~dg~~l~v 326 (365)
T 1jof_A 260 CALTFS-GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ------------LFLSPTPTSGGHSNAVSPCPWSDEWMAI 326 (365)
T ss_dssp EEECTT-SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE------------EEEEECSSCCTTCCCEEECTTCTTEEEE
T ss_pred EEECCC-CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe------------eeeeecCCCCcccceecCCCcCCCEEEE
Confidence 9 9998 6676666543 2 89999986 4432100 000111123455688999 8999988
Q ss_pred EcC--CeEEEeeccC
Q 009266 279 YND--EFIYLFTQDM 291 (538)
Q Consensus 279 ~~~--~~i~~~d~~~ 291 (538)
+.. +.|.+|++..
T Consensus 327 ~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 327 TDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECSSSCEEEEEEEET
T ss_pred EEcCCCeEEEEEEch
Confidence 873 5899999875
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=1.1e-17 Score=170.92 Aligned_cols=319 Identities=9% Similarity=-0.052 Sum_probs=186.8
Q ss_pred CCCceEEee--ccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEE---------EEEEc--CCCC
Q 009266 8 NNNKRARTS--VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVN---------TVSFN--TDGD 74 (538)
Q Consensus 8 ~~~~~l~t~--~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~~g~ 74 (538)
++.-.++.. ..++..+||....+... +.+..|...+. ..+|+ |+|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 33 GDEVWWVAPRPAEAGRATLVRRRADGAE---------------------ESALPAPWNVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp TTEEEEEEEETTTTTEEEEEEECTTSCE---------------------EESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred CCeEEEEecCcccCCcEEEEEECCCCCc---------------------ceeCCCCccccccccccCCccceeeeecCCC
Confidence 444445555 45788899986433322 34455555555 55565 9998
Q ss_pred E-EEEecC-CCeEEEEECC--C-CceeeeeccC-----CCCCeEEEEEeecCCCceEEEEeCC----------CcEEEee
Q 009266 75 I-LISGSD-DRRVILWDWK--T-ERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTCAAD----------GQVRHAQ 134 (538)
Q Consensus 75 ~-l~t~~~-d~~i~iw~~~--~-~~~~~~~~~~-----~~~~v~~l~~~~~~~~~~l~s~~~d----------g~v~vwd 134 (538)
+ |+.++. +..|.+|++. + +. ...+ .. |...+..++|+| +|+.|++++.+ ..|++|+
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~-~~~l-~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAV-PRPL-TPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCC-CEEC-SCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCC-CEec-cCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 8 776554 5567777765 2 43 3344 33 667889999999 99999998876 5899999
Q ss_pred ccc------Cceeeeeecc-ccCCCcEEEEEcCCCCcEEEEEcCC--------CcEEEEecC-CC---CeeeeeeecccC
Q 009266 135 ILE------RGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLR-TG---AATELFTCRPID 195 (538)
Q Consensus 135 ~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~ 195 (538)
+.+ +... .+. .+...+..++|+|+| +.|+.++.+ ..|++|++. ++ +.......
T Consensus 168 ~~~~~~~~~~~~~---~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---- 239 (662)
T 3azo_A 168 LDGSAAADRSAVR---ELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---- 239 (662)
T ss_dssp TTSTTTTCGGGSE---ESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE----
T ss_pred CCCCccccCCcee---EEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC----
Confidence 987 4332 244 555678889999999 566665543 379999998 56 23222221
Q ss_pred CCCCcceeeeeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC
Q 009266 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (538)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 273 (538)
+...+..++|+|+ +++++++..++ .|.+|++.+++....... ......+. -...+.+++|+|++
T Consensus 240 ------~~~~~~~~~~spd-g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p~-----w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 240 ------PEEAIAQAEWAPD-GSLIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGPL-----WTPGMRWFAPLANG 305 (662)
T ss_dssp ------TTBCEEEEEECTT-SCEEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCCC-----CSTTCCSEEECTTS
T ss_pred ------CCceEcceEECCC-CeEEEEECCCCCeEEEEEECCCCceeecccc--cccccCcc-----ccccCceEeEeCCC
Confidence 1236889999998 56888888888 566666545442211100 00000000 00114568999999
Q ss_pred CEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEE-EEec
Q 009266 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV-NFFG 352 (538)
Q Consensus 274 ~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v-~~~s 352 (538)
++++++..+.++||.+... ...++.+..+... +..+ .+ +
T Consensus 306 ~~~~~~~~~~~~l~~~d~~-------------------------------------~~~~~~l~~~~~~--~~~~~s~-~ 345 (662)
T 3azo_A 306 LIAVVHGKGAAVLGILDPE-------------------------------------SGELVDAAGPWTE--WAATLTV-S 345 (662)
T ss_dssp CEEEEEBSSSCEEEEEETT-------------------------------------TTEEEECCSSCCE--EEEEEEE-E
T ss_pred EEEEEEEcCccEEEEEECC-------------------------------------CCcEEEecCCCCe--EEEEEec-C
Confidence 9988876666777744321 1113344444433 5555 44 4
Q ss_pred CCCcEEEEeccCC--eEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEec
Q 009266 353 PKCEYVVSGSDCG--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (538)
Q Consensus 353 ~~~~~l~~gs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~ 413 (538)
++.-++++++.+. .|++|++.+++.......|...+....+++...+.+.+.....|..|-
T Consensus 346 ~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~ 408 (662)
T 3azo_A 346 GTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHI 408 (662)
T ss_dssp TTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEE
Confidence 4333444445443 566667767765544344444444444544444444443334555443
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=6.5e-17 Score=146.80 Aligned_cols=246 Identities=11% Similarity=0.101 Sum_probs=171.6
Q ss_pred cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeec----cccCCCcEEEEE-cCCCCcEEEEEcC-CCc
Q 009266 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL----GKHQGRAHKLAI-EPGSPHVFYTCGE-DGL 174 (538)
Q Consensus 101 ~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~~~~v~~~~~-~~~~~~~l~s~~~-dg~ 174 (538)
.++-..+.+|+++| ++.++++...++.|++|+.. ++.+..... ..+...+..+++ .+++ +++++... ++.
T Consensus 26 ~g~~~~p~~v~~~~--~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~ 101 (286)
T 1q7f_A 26 EGQFTEPSGVAVNA--QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQ 101 (286)
T ss_dssp TTCBSCEEEEEECT--TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCE
T ss_pred CCccCCCceEEECC--CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCE
Confidence 34556789999999 89888888889999999976 444332111 134467889999 4666 56666543 789
Q ss_pred EEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCC
Q 009266 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (538)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 254 (538)
|++|+ .+++.+..+... ....+..++++|+ ++++++...++.|++|+..... ....
T Consensus 102 i~~~d-~~g~~~~~~~~~---------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~-~~~~------------ 157 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGAT---------ILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQNGNV-LHKF------------ 157 (286)
T ss_dssp EEEEC-TTSCEEEEECTT---------TCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCE-EEEE------------
T ss_pred EEEEC-CCCcEEEEecCc---------cCCCceEEEEeCC-CCEEEEECCCCEEEEEcCCCCE-EEEe------------
Confidence 99999 556655544321 1125789999997 6788887788999999964321 1110
Q ss_pred CccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCC
Q 009266 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (538)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
....+...+.+++++|+|+++++.. .+.|++|+.... .+
T Consensus 158 -~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---------------------------------------~~ 197 (286)
T 1q7f_A 158 -GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---------------------------------------YL 197 (286)
T ss_dssp -ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---------------------------------------EE
T ss_pred -CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC---------------------------------------EE
Confidence 0002234689999999999887766 569999996431 12
Q ss_pred ceeeccccceeeeEEEEecCCCcEEEEeccCC-eEEEeeccCcceeEEeecCcc--eeeEEeecCCCCeEEEeecCCceE
Q 009266 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIK 410 (538)
Q Consensus 334 ~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg-~i~iwd~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~ 410 (538)
..+..+.....+..+++ +|+|+++++...++ .|++|+. +++.+..+..+.. .+.+++++|+++++++ +.+++|+
T Consensus 198 ~~~~~~g~~~~p~~i~~-d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~ 274 (286)
T 1q7f_A 198 RQIGGEGITNYPIGVGI-NSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLY 274 (286)
T ss_dssp EEESCTTTSCSEEEEEE-CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEE
T ss_pred EEEccCCccCCCcEEEE-CCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEE
Confidence 22222211112678888 99999988888776 9999995 6777777765543 4789999999987777 5799999
Q ss_pred EecCCCC
Q 009266 411 ILTPNAA 417 (538)
Q Consensus 411 vw~~~~~ 417 (538)
+|++...
T Consensus 275 v~~~~~~ 281 (286)
T 1q7f_A 275 IYRYVQL 281 (286)
T ss_dssp EEECSCC
T ss_pred EEEcccc
Confidence 9997653
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=1.2e-16 Score=145.07 Aligned_cols=248 Identities=14% Similarity=0.159 Sum_probs=173.1
Q ss_pred cCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecc-----CCCCCeEEEEEe-ecCCCceEEEEeC-CCcE
Q 009266 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS-----GHNDNVFQAKIM-PFTDDRSIVTCAA-DGQV 130 (538)
Q Consensus 58 ~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~-----~~~~~v~~l~~~-~~~~~~~l~s~~~-dg~v 130 (538)
.+|-..+.+|+++|+|+++++...++.|++|+.. ++.+..+.. +|...+..+++. + ++.++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN--SGDIIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT--TTEEEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC--CCeEEEEcCCCCCEE
Confidence 4566789999999999999998889999999977 665555421 344678999995 5 6666666543 7899
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
++|+ .+++.+... ...+...+..+++.|++ +++++...++.|++|+.. ++.+..+.... ....+..++
T Consensus 103 ~~~d-~~g~~~~~~-~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~--------~~~~p~~i~ 170 (286)
T 1q7f_A 103 QIYN-QYGQFVRKF-GATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSK--------HLEFPNGVV 170 (286)
T ss_dssp EEEC-TTSCEEEEE-CTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTT--------TCSSEEEEE
T ss_pred EEEC-CCCcEEEEe-cCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCC--------ccCCcEEEE
Confidence 9999 445544331 22344678999999998 688887888999999964 44444443211 122478999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CC-eEEEee
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFT 288 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~-~i~~~d 288 (538)
++|+ ++++++...++.|++|+.....+ ... ....+...+.+++++|+|+++++.. .+ .|++|+
T Consensus 171 ~~~~-g~l~v~~~~~~~i~~~~~~g~~~-~~~-------------~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 171 VNDK-QEIFISDNRAHCVKVFNYEGQYL-RQI-------------GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp ECSS-SEEEEEEGGGTEEEEEETTCCEE-EEE-------------SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred ECCC-CCEEEEECCCCEEEEEcCCCCEE-EEE-------------ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 9997 67888878899999999754221 110 0011124678999999999888876 44 899998
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEE
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~ 368 (538)
... ..+..+..+.....+..+++ +|+|+++++ +.+++|+
T Consensus 236 ~~g---------------------------------------~~~~~~~~~~~~~~~~~i~~-~~~g~l~vs-~~~~~v~ 274 (286)
T 1q7f_A 236 QDG---------------------------------------QLISALESKVKHAQCFDVAL-MDDGSVVLA-SKDYRLY 274 (286)
T ss_dssp TTS---------------------------------------CEEEEEEESSCCSCEEEEEE-ETTTEEEEE-ETTTEEE
T ss_pred CCC---------------------------------------CEEEEEcccCCCCcceeEEE-CCCCcEEEE-CCCCeEE
Confidence 542 22334443332223678888 999987777 5689999
Q ss_pred EeeccCcc
Q 009266 369 IWKKKGGE 376 (538)
Q Consensus 369 iwd~~~~~ 376 (538)
+|++....
T Consensus 275 v~~~~~~~ 282 (286)
T 1q7f_A 275 IYRYVQLA 282 (286)
T ss_dssp EEECSCCC
T ss_pred EEEccccc
Confidence 99986543
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.79 E-value=2.2e-17 Score=154.54 Aligned_cols=267 Identities=13% Similarity=0.137 Sum_probs=173.4
Q ss_pred CcEEEEEEcCCCCEEEEec---------CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC---C-
Q 009266 62 GCVNTVSFNTDGDILISGS---------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G- 128 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g- 128 (538)
..+..+++ +|++|+... .++.|.+|++.+++. ..+ ..+..++|+| +|++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-----~~~~~~~~Sp--Dg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-----ENATMPRISP--DGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-----ESCEEEEECT--TSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-----ccCCCeEECC--CCCEEEEEEeccCCCc
Confidence 45777788 888887642 256799999988764 233 4688999999 99999987754 3
Q ss_pred -cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC---------------------------CCcEEEEec
Q 009266 129 -QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---------------------------DGLVQHFDL 180 (538)
Q Consensus 129 -~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------------------------dg~i~iwd~ 180 (538)
.|.+|++.+++.... .. +.. +..++|+|++. .|+.++. ...|++|++
T Consensus 85 ~~l~~~~~~~g~~~~l--~~-~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 85 SEIWVADLETLSSKKI--LE-AKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEEEEETTTTEEEEE--EE-ESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred ceEEEEECCCCceEEE--Ec-CCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 377778877655433 22 233 89999999994 5555542 256999999
Q ss_pred CCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC-------eEEEEEcCCccccCCCCCCCCCcccCC
Q 009266 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-------YTRLYDIRKYKWDGSTDFGQPADYFCP 253 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~ 253 (538)
.+++.+..+.. . .+..++|+|+ + +++++..++ ...||.+.+++.
T Consensus 160 ~~~~~~~~l~~-----------~-~~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--------------- 210 (347)
T 2gop_A 160 ESEEVIEEFEK-----------P-RFSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIYIWEDGKE--------------- 210 (347)
T ss_dssp TTTEEEEEEEE-----------E-TTCEEEEETT-E-EEEEEECCCSSCCSSCCEEEEEEETTEE---------------
T ss_pred CCCeEEeeecC-----------C-CcccccCCCC-e-EEEEEecccccccccccccEEEeCCCce---------------
Confidence 88876344432 1 4678899998 5 777765542 344554443321
Q ss_pred CCccCCCccceEEEEEcCCCCEEEEEc-C--------CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 009266 254 PNLIGDEQVGITGLAFSDQSELLVSYN-D--------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (538)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
..+.. + ..+..+ +|+|++|+..+ . ..|++|+ ++
T Consensus 211 ~~l~~-~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-------------------------------- 252 (347)
T 2gop_A 211 EKMFE-K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-------------------------------- 252 (347)
T ss_dssp EEEEE-E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--------------------------------
T ss_pred EEecc-C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--------------------------------
Confidence 11111 1 334443 99999887665 2 2577777 32
Q ss_pred CCCCcccCCceeeccccceeeeE-EEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEe
Q 009266 325 ANTDVRIAPQVYKGHRNCVTVKG-VNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~-v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
........+... +.. +.| + ++ ++++++.++.++|| +.+++.. .+..+...|.+++|+| .+++++
T Consensus 253 ------~~~~l~~~~~~~--~~~~~~~-s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~ 317 (347)
T 2gop_A 253 ------EVMGILDEVDRG--VGQAKIK-D-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLK 317 (347)
T ss_dssp ------CEEESSTTCCSE--EEEEEEE-T-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEE
T ss_pred ------ceEeccccCCcc--cCCccEE-c-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEE
Confidence 111112223332 565 777 8 88 88999999999999 8866654 4444577899999999 677777
Q ss_pred ecCCce-EEecCCCCcccccCccc
Q 009266 404 GIESDI-KILTPNAADRATLPTNI 426 (538)
Q Consensus 404 ~~dg~v-~vw~~~~~~~~~~~~~~ 426 (538)
+.++.. .||.+. ++...+..+.
T Consensus 318 ~~~~~~~~l~~~~-g~~~~lt~~n 340 (347)
T 2gop_A 318 ETATRLRELFTWD-GEEKQLTDYN 340 (347)
T ss_dssp ECSSSCCEEEEES-SSEEECCCTT
T ss_pred cCCCChHHheEeC-CcEEEecccc
Confidence 777665 777765 4444444443
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.78 E-value=2.2e-15 Score=137.67 Aligned_cols=285 Identities=11% Similarity=0.026 Sum_probs=194.0
Q ss_pred EcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc
Q 009266 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~ 136 (538)
+..+...+.+|++.++|+++++...++.|.+|+.. ++........+...+..|++.+ ++.++++...++.|..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCC
Confidence 34556789999999999988887778899999988 5543322233556899999998 88888877778899999976
Q ss_pred cCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
+.. ....+......+..+++.|++ .++++....+.|.+|+. +++.... .... ....+..+++.++ +
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~-~~~~--------~~~~~~~i~~~~~-g 152 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREY-ELPN--------KGSYPSFITLGSD-N 152 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE-ECSS--------TTCCEEEEEECTT-S
T ss_pred -CcE-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEe-cCCC--------CCCCCceEEEcCC-C
Confidence 332 222233345678999999988 67777777889999998 5544322 1111 1125789999997 6
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~ 295 (538)
+++++....+.|..|+. +++.... ........+.++++.++|+++++.. .+.|.+|+. ++.
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~--------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-- 214 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEF--------------KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-- 214 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEE--------------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEe--------------eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--
Confidence 77777777789999998 5442110 0111234678999999999777765 568999997 421
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc
Q 009266 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (538)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~ 375 (538)
...+........+.++++ +++|+++++....+.|.+|+. ++
T Consensus 215 -------------------------------------~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g 255 (299)
T 2z2n_A 215 -------------------------------------ITEFKIPTPNARPHAITA-GAGIDLWFTEWGANKIGRLTS-NN 255 (299)
T ss_dssp -------------------------------------EEEEECSSTTCCEEEEEE-CSTTCEEEEETTTTEEEEEET-TT
T ss_pred -------------------------------------EEEEECCCCCCCceeEEE-CCCCCEEEeccCCceEEEECC-CC
Confidence 011111111113778888 999997777767889999998 45
Q ss_pred ceeEE-eecCcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 376 ELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 376 ~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
+.... +..+...+.++++ ++++++++.. .+.|..+++.+.
T Consensus 256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 256 IIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 43222 2344567899999 8888777665 566777776554
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=1.9e-17 Score=158.12 Aligned_cols=269 Identities=10% Similarity=0.033 Sum_probs=170.6
Q ss_pred EEEECCCCceeeeeccCCCC-----CeEEEEEeecCCCceEEEEeCC---CcEEEeecccCceeeeeeccccCCCcEEEE
Q 009266 86 ILWDWKTERVKLSFHSGHND-----NVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (538)
..++..++..+.++ ..+.. .+..++|+| +|++|+.+... ..|.+|++.+++.... ...+......+.
T Consensus 13 ~~~d~~~g~~~~~l-~~~~~~~~~~~~~~~~~Sp--dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l--~~~~~~~~~~~~ 87 (396)
T 3c5m_A 13 TFVDSDTQVKVTRL-TPTDIICHRNYFYQKCFTQ--DGKKLLFAGDFDGNRNYYLLNLETQQAVQL--TEGKGDNTFGGF 87 (396)
T ss_dssp EEECTTTCCEEEEC-SCTTSCEECCCTTSCCBCT--TSCEEEEEECTTSSCEEEEEETTTTEEEEC--CCSSCBCTTTCE
T ss_pred eeecCCCCcceEEE-ecCCCCccceeeecCcCCC--CCCEEEEEEecCCCceEEEEECCCCcEEEe--ecCCCCccccce
Confidence 34467777766555 33333 377889999 99998877543 4688889887654332 222322333478
Q ss_pred EcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE----------------EEEcCCCCcEEEE
Q 009266 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA----------------IAIDPRNANLFAV 221 (538)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------------~~~~~~~~~~l~~ 221 (538)
|+|++ +.|+.++.++.|++|++.+++.......+.. ... .-.. +.|+|+ +..++.
T Consensus 88 ~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----~~~--~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~ 158 (396)
T 3c5m_A 88 ISTDE-RAFFYVKNELNLMKVDLETLEEQVIYTVDEE-----WKG--YGTWVANSDCTKLVGIEILKRDWQPL-TSWEKF 158 (396)
T ss_dssp ECTTS-SEEEEEETTTEEEEEETTTCCEEEEEECCTT-----EEE--EEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHH
T ss_pred ECCCC-CEEEEEEcCCcEEEEECCCCCcEEEEecccc-----cCC--CCCEEEeccCCccccccccccccCCC-Ccceee
Confidence 99999 6777888888999999998876655442221 000 0011 346776 444443
Q ss_pred E-----eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEcC-------CeEEEee
Q 009266 222 A-----GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND-------EFIYLFT 288 (538)
Q Consensus 222 ~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~-------~~i~~~d 288 (538)
+ ..+..|++|++.+++.. .+. .+...+..+.|+| +++.|+..+. ..|++|+
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~---------------~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIETGELE---------------VIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVN 222 (396)
T ss_dssp HHHHHTCCCEEEEEEETTTCCEE---------------EEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEE
T ss_pred eeeccCCCcceEEEEECCCCcEE---------------eec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEE
Confidence 3 35668999999876421 111 2345688999999 7887666543 2477777
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccC----
Q 009266 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---- 364 (538)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~d---- 364 (538)
+..+. ...+..+.....+..+.| +|+|++|+.++.+
T Consensus 223 ~~~~~---------------------------------------~~~l~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 223 EDGSN---------------------------------------VRKIKEHAEGESCTHEFW-IPDGSAMAYVSYFKGQT 262 (396)
T ss_dssp TTSCC---------------------------------------CEESSCCCTTEEEEEEEE-CTTSSCEEEEEEETTTC
T ss_pred CCCCc---------------------------------------eeEeeccCCCccccceEE-CCCCCEEEEEecCCCCc
Confidence 65421 111212211123677888 9999988776554
Q ss_pred -CeEEEeeccCcceeEEeecCcceeeEEeecC-CCCeEEEee----------------cCCceEEecCCCCcccccCccc
Q 009266 365 -GRIFIWKKKGGELIRVIEADRHVVNCIEPHP-HSTVLASSG----------------IESDIKILTPNAADRATLPTNI 426 (538)
Q Consensus 365 -g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~----------------~dg~v~vw~~~~~~~~~~~~~~ 426 (538)
+.|++|++.+++........ . .. ++|+| ++++|++++ .++.|++|++.+++...+..+.
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (396)
T 3c5m_A 263 DRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHS 339 (396)
T ss_dssp CEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECC
T ss_pred cceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCC
Confidence 45999999888754433222 2 23 89999 999888765 3478999999888766555544
Q ss_pred e
Q 009266 427 E 427 (538)
Q Consensus 427 ~ 427 (538)
.
T Consensus 340 ~ 340 (396)
T 3c5m_A 340 T 340 (396)
T ss_dssp C
T ss_pred C
Confidence 3
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=1.9e-16 Score=162.65 Aligned_cols=251 Identities=8% Similarity=-0.072 Sum_probs=162.7
Q ss_pred CCcCcEEEEEEcCCCCEEEEecCCC-----eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCc----
Q 009266 59 KHRGCVNTVSFNTDGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g~~l~t~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~---- 129 (538)
+|...+..++|||+|++||.++..+ .|++|++.+++.+...... ..+..++|+| +|+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wsp--Dg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTH--DGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECT--TSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEe--CCCEEEEEEECCccccc
Confidence 4555789999999999999765433 8999999999876543222 2367899999 9999999887765
Q ss_pred ------------EEEeecccCcee--eeeeccccCCCcEEEEEcCCCCcEEEEEcC-----CCcEEEEecCC------CC
Q 009266 130 ------------VRHAQILERGGV--ETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-----DGLVQHFDLRT------GA 184 (538)
Q Consensus 130 ------------v~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~ 184 (538)
|++|++.++... .......|...+..+.|+|+++ +|+.++. +..|++|++.+ +.
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 999999876532 2211233555678999999995 5554433 56899999876 32
Q ss_pred -eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC---CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC
Q 009266 185 -ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (538)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (538)
....+..+. ..+.. .|+|+++.+++.+..+ +.|.+|++.++.
T Consensus 277 ~~~~~l~~~~----------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~----------------------- 322 (710)
T 2xdw_A 277 LKWVKLIDNF----------EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE----------------------- 322 (710)
T ss_dssp CCCEEEECSS----------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC-----------------------
T ss_pred cceEEeeCCC----------CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC-----------------------
Confidence 222232211 01222 3556533333333221 234444443321
Q ss_pred ccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccc
Q 009266 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
....+.+..+.
T Consensus 323 ---------------------------------------------------------------------~~~~~~l~~~~ 333 (710)
T 2xdw_A 323 ---------------------------------------------------------------------ESKWKVLVPEH 333 (710)
T ss_dssp ---------------------------------------------------------------------GGGCEEEECCC
T ss_pred ---------------------------------------------------------------------cccceeccCCC
Confidence 00112233332
Q ss_pred cceeeeEEEEecCCCcEEEEeccCCe--EEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEe----ecCCceEEecC
Q 009266 341 NCVTVKGVNFFGPKCEYVVSGSDCGR--IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS----GIESDIKILTP 414 (538)
Q Consensus 341 ~~~~i~~v~~~s~~~~~l~~gs~dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----~~dg~v~vw~~ 414 (538)
....+..+.| ++++.++++...++. |++|++.+++.+..+..+.+.|..++++|+++.|+.. ...+.|++|++
T Consensus 334 ~~~~~~~~~~-~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 334 EKDVLEWVAC-VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp SSCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCCeEEEEEE-EcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 2123667787 677888888888874 6667776788888888888889999999999866533 23478999999
Q ss_pred CCCc
Q 009266 415 NAAD 418 (538)
Q Consensus 415 ~~~~ 418 (538)
.+++
T Consensus 413 ~tg~ 416 (710)
T 2xdw_A 413 TKEE 416 (710)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 8776
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=5.2e-16 Score=152.34 Aligned_cols=288 Identities=11% Similarity=0.085 Sum_probs=197.2
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecc--cCceeeeeeccc
Q 009266 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL--ERGGVETKLLGK 148 (538)
Q Consensus 71 ~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~ 148 (538)
|.+.++++...+++|.++|..+++.+.++.. ...+..++|+| ++++|++++.++.|.+||+. +.+.+.. +..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~~--i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAE--IKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEE--EEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeEE--Eec
Confidence 4456777888899999999999998887743 33577999999 99999999999999999995 6655543 332
Q ss_pred cCCCcEEEEEc----CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCC-CCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 149 HQGRAHKLAIE----PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 149 ~~~~v~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
. .....++|+ |+|+.++++....++|.|+|..+.+.+..+........ ........+..+.+++++..+++...
T Consensus 239 G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 239 G-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp C-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred C-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 2 236789999 69965555666679999999999998887764321100 00001125778888988666777777
Q ss_pred CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCC
Q 009266 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSS 301 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~ 301 (538)
..|.|.++|....+.... ..+ ........+.|+|+|++|+++. .++|.++|+.+++
T Consensus 318 ~~g~v~~vd~~~~~~~~v------------~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k-------- 375 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKT------------TEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-------- 375 (567)
T ss_dssp TTTEEEEEETTCSSEEEE------------EEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE--------
T ss_pred CCCeEEEEecCCCcccee------------eee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc--------
Confidence 889999999876431100 000 1123467889999999887665 5689999998742
Q ss_pred CccccccccccCCCCccccCCCCCCCCcccCCceeec-cccceeeeEEEEecCCCcE-EEEec-cCCeEEEeeccC----
Q 009266 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEY-VVSGS-DCGRIFIWKKKG---- 374 (538)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~-l~~gs-~dg~i~iwd~~~---- 374 (538)
....+.. ...+..-....|++|++.. .+++. .++.|.+++..+
T Consensus 376 ------------------------------l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 376 ------------------------------LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp ------------------------------EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred ------------------------------EEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 1222221 1100001122344787544 44443 468999999987
Q ss_pred ---cceeEEeecCcceeeEEeecCCCCeEEEeec-------CCceEEecCCCC
Q 009266 375 ---GELIRVIEADRHVVNCIEPHPHSTVLASSGI-------ESDIKILTPNAA 417 (538)
Q Consensus 375 ---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------dg~v~vw~~~~~ 417 (538)
.+.++++......-..+..+|++++|.+... ...|.|+++.+.
T Consensus 426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6778888765444456789999998887653 459999998876
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.76 E-value=8.5e-16 Score=141.88 Aligned_cols=286 Identities=12% Similarity=0.095 Sum_probs=190.9
Q ss_pred cCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 009266 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL 97 (538)
Q Consensus 18 ~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~ 97 (538)
.+++|.+||..+++.....+... .-+........+++. .++++++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~---------------n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~ 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA---------------NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH---------------HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhh---------------cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE
Confidence 38899999999998764321100 001122446777775 35566666677999999999999888
Q ss_pred eeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccc---cCCCcEEEEEcCCCCcEEEEEc-CCC
Q 009266 98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK---HQGRAHKLAIEPGSPHVFYTCG-EDG 173 (538)
Q Consensus 98 ~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~-~dg 173 (538)
++ . .......|++++ ++..+++...++.|.+||+.+++......... +......|++ ..+ +++++.. .++
T Consensus 79 ~i-~-~~~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~ 152 (328)
T 3dsm_A 79 RI-T-GFTSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQN 152 (328)
T ss_dssp EE-E-CCSSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCC
T ss_pred Ec-C-CCCCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCC
Confidence 77 2 346789999998 88544444478999999999887655433322 1114556777 333 5555554 488
Q ss_pred cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC----------CeEEEEEcCCccccCCCC
Q 009266 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----------EYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~ 243 (538)
.|.+||+.+++.+..+.... ....++++|+ +++++++..+ +.|.+||..++++.....
T Consensus 153 ~v~viD~~t~~~~~~i~~g~-----------~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTIGI-----------QPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp EEEEEETTTTEEEEEEECSS-----------CBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCeEEEEEEcCC-----------CccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 99999999998877665321 3467889997 6766666554 789999998876432211
Q ss_pred CCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 009266 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (538)
. ........++|+|++++|.++.. .|++||..++.....
T Consensus 221 ~--------------~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~-------------------------- 259 (328)
T 3dsm_A 221 F--------------KLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVR-------------------------- 259 (328)
T ss_dssp C--------------CTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSS--------------------------
T ss_pred c--------------CCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeee--------------------------
Confidence 1 01135789999999998877765 899999876532110
Q ss_pred CCCCCcccCCceeeccccceeeeEEEEecC-CCcEEEEe----ccCCeEEEeeccCcceeEEeecCcceeeEEee
Q 009266 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSG----SDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~~g----s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (538)
..+..... ....+++ +| +++++++. ..++.|.+|+.. ++.+.++... .....++|
T Consensus 260 ----------~~~~~~~~--~p~gi~v-dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 260 ----------PFLEFRDT--KYYGLTV-NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp ----------CSBCCCSS--CEEEEEE-CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred ----------eeecCCCC--ceEEEEE-cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 00111111 2678888 98 56666666 678999999997 9988888642 23455655
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.76 E-value=1.3e-16 Score=163.48 Aligned_cols=252 Identities=8% Similarity=-0.037 Sum_probs=159.9
Q ss_pred CCcCcEEEEEEcCCCCEEE-----EecCCCeEEEEECCCCcee-eeeccCCCCCeEEEEEeecCCCceEEEEeCCCc---
Q 009266 59 KHRGCVNTVSFNTDGDILI-----SGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ--- 129 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g~~l~-----t~~~d~~i~iw~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~--- 129 (538)
+|...+.+++|||+|++|| .|+.+..|++|++.+++.+ ...+.. .....++|+| +|+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wsp--Dg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTP--DSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECT--TSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEec--CCCEEEEEEecCCCCC
Confidence 5666899999999999999 4555679999999998865 221111 1226889999 9999999988766
Q ss_pred ----------EEEeecccCcee--eeeeccccCCCcEEEEEcCCCCcEEEEEcCCC----cEEEEecCCCCeeeeeeecc
Q 009266 130 ----------VRHAQILERGGV--ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCRP 193 (538)
Q Consensus 130 ----------v~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~ 193 (538)
|++|++.++... .......|...+..+.|+|+|+. |+.++.++ .|++|+..++....... +.
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~ 271 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY-LFVYILRGWSENDVYWKRPGEKDFRLLVK-GV 271 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC-EEEEEEETTTEEEEEEECTTCSSCEEEEE-CS
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE-EEEEEeCCCCceEEEEEcCCCCceEEeec-CC
Confidence 999999877632 22223445567889999999954 45444444 56666655444332222 11
Q ss_pred cCCCCCcceeeeeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEc
Q 009266 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (538)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 270 (538)
..+....+ +++ .+++.+. .++.|.+|++.++..
T Consensus 272 ----------~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~-------------------------------- 307 (695)
T 2bkl_A 272 ----------GAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPAR-------------------------------- 307 (695)
T ss_dssp ----------SCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSG--------------------------------
T ss_pred ----------CceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCc--------------------------------
Confidence 12333444 443 3444333 135555555543210
Q ss_pred CCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEE
Q 009266 271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (538)
Q Consensus 271 ~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 350 (538)
.....+..+.....+..+++
T Consensus 308 ------------------------------------------------------------~~~~~l~~~~~~~~l~~~~~ 327 (695)
T 2bkl_A 308 ------------------------------------------------------------ASWKEIVPEDSSASLLSVSI 327 (695)
T ss_dssp ------------------------------------------------------------GGCEEEECCCSSCEEEEEEE
T ss_pred ------------------------------------------------------------cCCeEEecCCCCCeEEEEEE
Confidence 00111221211112666777
Q ss_pred ecCCCcEEEEeccCCeEEEeecc-CcceeEEeecC-cceeeEEeecCCCCeEEE----eecCCceEEecCCCCccccc
Q 009266 351 FGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEAD-RHVVNCIEPHPHSTVLAS----SGIESDIKILTPNAADRATL 422 (538)
Q Consensus 351 ~s~~~~~l~~gs~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s----~~~dg~v~vw~~~~~~~~~~ 422 (538)
+ ++.++++...++..+||.+. +++.+..+..+ .+.|..++++|+++.|+. ....++|++|++.+++...+
T Consensus 328 -~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 328 -V-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp -E-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred -E-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 5 67788888999988888665 46666666655 677889999999987663 33457899999988765433
No 184
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.75 E-value=1.3e-15 Score=139.87 Aligned_cols=303 Identities=13% Similarity=0.108 Sum_probs=195.8
Q ss_pred CCCCCceEEeecc-----CCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEec
Q 009266 6 NNNNNKRARTSVD-----KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (538)
Q Consensus 6 ~~~~~~~l~t~~~-----d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~ 80 (538)
.+|+++++++... ++.|.+.|..+++.+. ++..-..+ . ++++|+|++|+.++
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~---------------------~I~vG~~P-~-va~spDG~~lyVan 96 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---------------------MIDGGFLP-N-PVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---------------------EEEECSSC-E-EEECTTSSCEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEE---------------------EEECCCCC-c-EEECCCCCEEEEEc
Confidence 4688888888765 6799999999888762 23322334 4 99999999887765
Q ss_pred ----------CCCeEEEEECCCCceeeeeccCC------CCCeEEEEEeecCCCceEEEEeC--CCcEEEeecccCceee
Q 009266 81 ----------DDRRVILWDWKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVE 142 (538)
Q Consensus 81 ----------~d~~i~iw~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~~l~s~~~--dg~v~vwd~~~~~~~~ 142 (538)
.++.|.+||..+++.+.++..+. ......++|+| +|++|+++.. ++.|.++|+.+++.+.
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp--DGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC--CCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 35689999999999887774322 12466789999 9999998874 6899999999988776
Q ss_pred eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeee-EEEEEc-CCCCcEE
Q 009266 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNL-NAIAID-PRNANLF 219 (538)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-~~~~~~l 219 (538)
...+.+ |..+.|.+.+.+++.+.||.+.+.++.+ ++...... ..... ...++ ....|. ++ ++++
T Consensus 175 tI~v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~~~-----~~~~~~~~~~~~~~d-G~~~ 241 (386)
T 3sjl_D 175 MLDVPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHP-----EDEFLINHPAYSQKA-GRLV 241 (386)
T ss_dssp EEECCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSC-----TTSCBCSCCEEETTT-TEEE
T ss_pred EEECCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-ceecc-----ccccccccceeEcCC-CcEE
Confidence 643332 1223355546777888899999999876 55432111 10000 00111 123554 44 5555
Q ss_pred EEEeCCCeEEEEEcCCcc--ccCCCCCCCCCcccCCCCc-cCCCccceEEEEEcCCCCEEEEEcC-----------CeEE
Q 009266 220 AVAGSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYND-----------EFIY 285 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~-----------~~i~ 285 (538)
+ .+..|.|++.|+.... ......+ +..... ..-.......++++|+++.|..... +.|.
T Consensus 242 ~-vs~~g~V~v~d~~~~~~~v~~~~~~------~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~ 314 (386)
T 3sjl_D 242 W-PTYTGKIHQIDLSSGDAKFLPAVEA------LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 314 (386)
T ss_dssp E-EBTTSEEEEEECTTSSCEECCCEES------SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred E-EeCCCEEEEEECCCCcceeecceec------cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence 4 5558999999997653 1111100 000000 0011223345778998887766531 3688
Q ss_pred EeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc-EEEE-ecc
Q 009266 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVS-GSD 363 (538)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~~-gs~ 363 (538)
++|+.+. +.++.+..-. .++++.+ +++++ +|++ ...
T Consensus 315 viD~~t~--------------------------------------kv~~~i~vg~---~~~~lav-s~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 315 VLDAKTG--------------------------------------ERLAKFEMGH---EIDSINV-SQDEKPLLYALSTG 352 (386)
T ss_dssp EEETTTC--------------------------------------CEEEEEEEEE---EECEEEE-CSSSSCEEEEEETT
T ss_pred EEECCCC--------------------------------------eEEEEEECCC---CcceEEE-CCCCCeEEEEEcCC
Confidence 9998873 3344443322 3789998 99997 6665 455
Q ss_pred CCeEEEeeccCcceeEEeecCcceeeEEeecCC
Q 009266 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH 396 (538)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 396 (538)
++.|.++|..+++.++++... +..+.|.+++|
T Consensus 353 ~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 899999999999999988743 34456666665
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=9.9e-16 Score=143.27 Aligned_cols=250 Identities=10% Similarity=0.081 Sum_probs=157.7
Q ss_pred CCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC---C--eEEEEECCCC
Q 009266 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD---R--RVILWDWKTE 93 (538)
Q Consensus 19 d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d---~--~i~iw~~~~~ 93 (538)
++.|.+|++.+++.. .+ ..+.+++|||+|++||.++.+ + .|.+|++.++
T Consensus 42 ~~~l~~~d~~~~~~~----------------------~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g 95 (347)
T 2gop_A 42 ENTIVIENLKNNARR----------------------FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL 95 (347)
T ss_dssp EEEEEEEETTTCCEE----------------------EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT
T ss_pred cceEEEEeCCCCceE----------------------Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC
Confidence 567888888866542 22 458899999999999987653 2 4888888887
Q ss_pred ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC---------------------------CcEEEeecccCceeeeeec
Q 009266 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---------------------------GQVRHAQILERGGVETKLL 146 (538)
Q Consensus 94 ~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---------------------------g~v~vwd~~~~~~~~~~~~ 146 (538)
+..... .. .. +..++|+| +|+.|+.++.+ ..|.+|++.+++.+.. +
T Consensus 96 ~~~~l~-~~-~~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~--l 168 (347)
T 2gop_A 96 SSKKIL-EA-KN-IRSLEWNE--DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE--F 168 (347)
T ss_dssp EEEEEE-EE-SE-EEEEEECT--TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE--E
T ss_pred ceEEEE-cC-CC-ccceeECC--CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee--e
Confidence 754433 22 33 99999999 99998887642 5789999987765232 2
Q ss_pred cccCCCcEEEEEcCCCCcEEEEEcCCC-------cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE
Q 009266 147 GKHQGRAHKLAIEPGSPHVFYTCGEDG-------LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 219 (538)
.. . .+..++|+|++ +++++..+. ...||.+.+++.. .+.. + ..+..+ +|+ +++|
T Consensus 169 ~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~----------~-~~~~~~--spd-g~~l 229 (347)
T 2gop_A 169 EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFE----------K-VSFYAV--DSD-GERI 229 (347)
T ss_dssp EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEE----------E-ESEEEE--EEC-SSCE
T ss_pred cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE-Eecc----------C-cceeeE--CCC-CCEE
Confidence 22 3 78899999998 666665432 3445544444432 2221 1 233433 898 5666
Q ss_pred EEEeCC--------CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEE-EEEcCCCCEEEEEc-CCeEEEeec
Q 009266 220 AVAGSD--------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG-LAFSDQSELLVSYN-DEFIYLFTQ 289 (538)
Q Consensus 220 ~~~~~d--------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~-~~~i~~~d~ 289 (538)
+.++.+ ..|.+|+ +++. ..+...+...+.. +.|+ ++ ++++++ ++.++|| +
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~d--~~~~---------------~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 230 LLYGKPEKKYMSEHNKLYIYD--GKEV---------------MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp EEEECCSSSCCCSSCEEEEEC--SSCE---------------EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred EEEEccccCCccccceEEEEC--CCce---------------EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 655533 4677777 3321 1222234556776 8999 88 777666 6688999 7
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeE-E
Q 009266 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI-F 368 (538)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i-~ 368 (538)
.++ .. ..+..+.. .|.+++| +| .++++++.++.. .
T Consensus 290 ~~g--------------------------------------~~-~~~~~~~~--~v~~~~~-s~--~~~~~~~~~~~~~~ 325 (347)
T 2gop_A 290 WDG--------------------------------------EI-KPIAKGRH--WIMGFDV-DE--IVVYLKETATRLRE 325 (347)
T ss_dssp ESS--------------------------------------SE-EEEECSSS--EEEEEEE-SS--SEEEEEECSSSCCE
T ss_pred cCC--------------------------------------ce-EEEecCCC--eEEeeee-eC--cEEEEEcCCCChHH
Confidence 632 11 22233333 3888888 88 677777766654 6
Q ss_pred EeeccCcceeEEeecCcc
Q 009266 369 IWKKKGGELIRVIEADRH 386 (538)
Q Consensus 369 iwd~~~~~~~~~~~~h~~ 386 (538)
||.+. ++ ...+..|..
T Consensus 326 l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 326 LFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEEES-SS-EEECCCTTS
T ss_pred heEeC-Cc-EEEeccccH
Confidence 77665 44 444555543
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=1.2e-15 Score=141.17 Aligned_cols=242 Identities=14% Similarity=0.065 Sum_probs=167.4
Q ss_pred CCCCCceEEeeccC------------------------CceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc
Q 009266 6 NNNNNKRARTSVDK------------------------ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR 61 (538)
Q Consensus 6 ~~~~~~~l~t~~~d------------------------~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 61 (538)
+.|+++++++...+ ++|.+|+..+|+++. ..-.++-
T Consensus 31 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~--------------------~~~~~~~ 90 (329)
T 3fvz_A 31 LDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ--------------------SSGKNLF 90 (329)
T ss_dssp ECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE--------------------EECTTTC
T ss_pred ECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe--------------------ccCCCcc
Confidence 35678888887777 368888887777641 1112455
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeec--------cCCCCCeEEEEEeecCCCceEEEEe-CCCcEE
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSFH--------SGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVR 131 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~-~~~~~~--------~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~ 131 (538)
.....|+++|+|+++++...++.|++|+..... .+..+- ..+......|+++| .++.++++.+ .++.|+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~-~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP-STGAVFVSDGYCNSRIV 169 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT-TTCCEEEEECSSCCEEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC-CCCeEEEEeCCCCCeEE
Confidence 678999999999999999999999999976442 344442 23445788999997 1355556665 589999
Q ss_pred EeecccCceeeeeec--------cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 132 HAQILERGGVETKLL--------GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 132 vwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
+|+. .+..+..... .++......|++.|++.+++++...++.|++|++.+++.+..+.... ..
T Consensus 170 ~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~--------~~ 240 (329)
T 3fvz_A 170 QFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS--------FG 240 (329)
T ss_dssp EECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT--------TT
T ss_pred EEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc--------cC
Confidence 9994 4544433111 12334588999999844788888889999999999888877764332 12
Q ss_pred eeeEEEEEcCCCCcEEEEEe-------CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE
Q 009266 204 VNLNAIAIDPRNANLFAVAG-------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 276 (538)
..+..++|+| +..+++.+ ....|++|++.++++...+.. ...+...+.+++++|+|.++
T Consensus 241 ~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------~~~~~~~p~~ia~~~dG~ly 306 (329)
T 3fvz_A 241 RNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------VRKHFDMPHDIVASEDGTVY 306 (329)
T ss_dssp TCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------------SSSCCSSEEEEEECTTSEEE
T ss_pred CCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------------CCCccCCeeEEEECCCCCEE
Confidence 2567889998 34444433 345899999988765432110 12334568999999999777
Q ss_pred EEEc-CCeEEEeeccC
Q 009266 277 VSYN-DEFIYLFTQDM 291 (538)
Q Consensus 277 ~~~~-~~~i~~~d~~~ 291 (538)
++.. +++|++|++..
T Consensus 307 vad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 307 IGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEESSSCCEEEEEEEE
T ss_pred EEECCCCEEEEEeCCc
Confidence 7766 55899999865
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=2.8e-15 Score=136.69 Aligned_cols=245 Identities=10% Similarity=0.028 Sum_probs=165.2
Q ss_pred cCCCCCeEEEEEeecCCCc-eEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEe
Q 009266 101 SGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (538)
Q Consensus 101 ~~~~~~v~~l~~~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 179 (538)
..+.....+++|+| +++ +++++..++.|.+|+..++ ... +..+...+.+++++|++ +++++...++.|.+|+
T Consensus 24 ~~~~~~~eg~~~d~--~g~~l~~~~~~~~~i~~~~~~~~--~~~--~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 24 ADGFTWTEGPVYVP--ARSAVIFSDVRQNRTWAWSDDGQ--LSP--EMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQR 96 (296)
T ss_dssp ECCCSSEEEEEEEG--GGTEEEEEEGGGTEEEEEETTSC--EEE--EESSCSSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred ecCCccccCCeEeC--CCCEEEEEeCCCCEEEEEECCCC--eEE--EECCCCCcceeeECCCC-cEEEEecCCCeEEEEc
Confidence 34556778999999 888 7778888999999999876 322 44566779999999999 6777777778999999
Q ss_pred cCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE----e-------------CCCeEEEEEcCCccccCCC
Q 009266 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA----G-------------SDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~-------------~dg~v~iwd~~~~~~~~~~ 242 (538)
..+++.......... .....+..++++|+ ++++++. + ..+.|..++.. ++..
T Consensus 97 ~~~g~~~~~~~~~~~------~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~--- 165 (296)
T 3e5z_A 97 EPGGEWESIADSFEG------KKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS--- 165 (296)
T ss_dssp STTCCEEEEECEETT------EECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE---
T ss_pred CCCCcEEEEeeccCC------CCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE---
Confidence 988876543322111 01124678999997 6777763 2 12455555543 2210
Q ss_pred CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccC-CCCCCCCCCCCccccccccccCCCCcccc
Q 009266 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM-GLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (538)
....+......++|+|+|++|++.+ .+.|++|++.. +..
T Consensus 166 -------------~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~-------------------------- 206 (296)
T 3e5z_A 166 -------------APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGET-------------------------- 206 (296)
T ss_dssp -------------EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCE--------------------------
T ss_pred -------------EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcC--------------------------
Confidence 0112234578999999999886555 45899999862 100
Q ss_pred CCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEee-cCCCCe
Q 009266 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP-HPHSTV 399 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-s~~~~~ 399 (538)
......+..+.. .+..+++ +++|+++++. ++.|++|+.. ++.+..+..+.. +++++| +|+++.
T Consensus 207 ---------~~~~~~~~~~~~--~p~~i~~-d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~ 270 (296)
T 3e5z_A 207 ---------EYQGVHFTVEPG--KTDGLRV-DAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRT 270 (296)
T ss_dssp ---------EEEEEEECCSSS--CCCSEEE-BTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCE
T ss_pred ---------cCCCeEeeCCCC--CCCeEEE-CCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCE
Confidence 000112211111 2567888 9999977766 7899999985 888888887777 999999 689998
Q ss_pred EEEeecCCceEEecCCCCcc
Q 009266 400 LASSGIESDIKILTPNAADR 419 (538)
Q Consensus 400 l~s~~~dg~v~vw~~~~~~~ 419 (538)
|++++.+ .|..+++.+...
T Consensus 271 L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 271 LYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEETT-EEEEEECSCCBC
T ss_pred EEEEcCC-eEEEEEcccccc
Confidence 8888765 344445554443
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.73 E-value=3.5e-14 Score=132.70 Aligned_cols=290 Identities=12% Similarity=0.024 Sum_probs=186.9
Q ss_pred CCCCCceEEeecc--CC---ceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEec
Q 009266 6 NNNNNKRARTSVD--KA---LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (538)
Q Consensus 6 ~~~~~~~l~t~~~--d~---~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~ 80 (538)
.+|+++++++... .. +|.++|..+++++ ..+.....+ .++|+|+|++|+.+.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~---------------------~~i~~g~~p--~i~~spDg~~lyv~n 84 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL---------------------GHVNGGFLP--NPVAAHSGSEFALAS 84 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE---------------------EEecCCCCC--CeEECCCCCEEEEEe
Confidence 3477777777653 22 8899999988865 233333333 899999999998875
Q ss_pred ----------CCCeEEEEECCCCceeeeeccC------CCCCeEEEEEeecCCCceEEEEeC--CCcEEEeecccCceee
Q 009266 81 ----------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVE 142 (538)
Q Consensus 81 ----------~d~~i~iw~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~~l~s~~~--dg~v~vwd~~~~~~~~ 142 (538)
.++.|.+||..+.+.+.++..+ +......++|+| +|++|+++.. .+.|.++| .+++.+.
T Consensus 85 ~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred ccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence 3678999999988877665322 012355889999 9999999874 47899999 8876654
Q ss_pred e-eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeee-eEEEEEcCCCCcEEE
Q 009266 143 T-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN-LNAIAIDPRNANLFA 220 (538)
Q Consensus 143 ~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~ 220 (538)
. .... .++.+.|.+++.+++.+.+|.+.++++ +++........... . ...+ .....+.++++.+++
T Consensus 162 ~~i~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~--~---~~~p~~~~~~~~~~~~~~~~ 229 (373)
T 2mad_H 162 QLLSSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML--T---AAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred EEcCCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc--c---CCcceeecceeEecCCEEEE
Confidence 3 2221 135666777677888889999999999 77766332211100 0 1111 123456666444444
Q ss_pred EEeCCCeEEEEEcCCcccc--CCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-----------CCeEEEe
Q 009266 221 VAGSDEYTRLYDIRKYKWD--GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLF 287 (538)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----------~~~i~~~ 287 (538)
+. ..+.|.+.|+...... ..+..... ..............++++|+++.|.++. .+.|.++
T Consensus 230 ~~-~~~~v~vid~~~~~~~v~~~~~~~~~-----~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 230 PV-YSGKILQADISAAGATNKAPIDALSG-----GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred Ec-CCceEEEEeccCCcceEeeeeeecCC-----cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 44 6789999998754211 11000000 0000011122345578999988776653 2368999
Q ss_pred eccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc-EEEEec-cCC
Q 009266 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCG 365 (538)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~~gs-~dg 365 (538)
|+.+. +.+.++.... ...++.| +|+|+ +++++. .++
T Consensus 304 D~~t~--------------------------------------~vv~~i~~g~---~p~~i~~-s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 304 TGLVG--------------------------------------QTSSQISLGH---DVDAISV-AQDGGPDLYALSAGTE 341 (373)
T ss_pred ECCCC--------------------------------------EEEEEEECCC---CcCeEEE-CCCCCeEEEEEcCCCC
Confidence 98763 3334443222 2678888 99999 777776 489
Q ss_pred eEEEeeccCcceeEEe
Q 009266 366 RIFIWKKKGGELIRVI 381 (538)
Q Consensus 366 ~i~iwd~~~~~~~~~~ 381 (538)
.|.+||+.+++.++++
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 9999999999999874
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.73 E-value=3.8e-15 Score=136.85 Aligned_cols=284 Identities=12% Similarity=0.036 Sum_probs=189.9
Q ss_pred EEEcCCCCEEEEecC-----CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe----------CCCcEE
Q 009266 67 VSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVR 131 (538)
Q Consensus 67 ~~~s~~g~~l~t~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~----------~dg~v~ 131 (538)
....|+++.|..... ++.|.+.|..+++.+.++..+.. + . ++++| +|++|++++ .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~sp--DG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVAD--DGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECT--TSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECC--CCCEEEEEcccccccccCCCCCEEE
Confidence 445788888777654 57999999999999888844433 3 4 99999 999998876 357899
Q ss_pred EeecccCceeeeeeccc-----cCCCcEEEEEcCCCCcEEEEEc--CCCcEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 132 HAQILERGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 132 vwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
+||..+.+.+....+.. .......++|+|+|+ +|+++. .++.|.++|+.+++.+..+....
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----------- 180 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----------- 180 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----------
Confidence 99999988776543332 122466799999995 555554 36899999999999888875321
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ccccCCCCCCCCCcccCCCCccCCCccce-EEEEE-cCCCCEEEEEcC
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGI-TGLAF-SDQSELLVSYND 281 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-s~~~~~l~~~~~ 281 (538)
+..+.|.+.+.+++.+.||++.+.++.. ++..... . ..+.....++ ....| .++|+++.....
T Consensus 181 ---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~----------~-~~~~~~~~~~~~~~~~~~~dG~~~~vs~~ 246 (386)
T 3sjl_D 181 ---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH----------T-EVFHPEDEFLINHPAYSQKAGRLVWPTYT 246 (386)
T ss_dssp ---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE----------C-CCCSCTTSCBCSCCEEETTTTEEEEEBTT
T ss_pred ---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEee----------c-ceeccccccccccceeEcCCCcEEEEeCC
Confidence 1122243456777778888888888875 4421100 0 0000001111 12355 478887777778
Q ss_pred CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee--------ccccceeeeEEEEecC
Q 009266 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--------GHRNCVTVKGVNFFGP 353 (538)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~v~~~s~ 353 (538)
+.|+++|+.+.... ....+. ..-.+.....+++ +|
T Consensus 247 g~V~v~d~~~~~~~------------------------------------v~~~~~~~~~~~~~~g~~p~g~q~~a~-~~ 289 (386)
T 3sjl_D 247 GKIHQIDLSSGDAK------------------------------------FLPAVEALTEAERADGWRPGGWQQVAY-HR 289 (386)
T ss_dssp SEEEEEECTTSSCE------------------------------------ECCCEESSCHHHHHTTEEECSSSCEEE-ET
T ss_pred CEEEEEECCCCcce------------------------------------eecceeccccccccccccCCCcceeeE-CC
Confidence 89999998754211 011110 0000001334666 88
Q ss_pred CCcEEEEecc----------CCeEEEeeccCcceeEEeecCcceeeEEeecCCCC-eEEEe-ecCCceEEecCCCCcc
Q 009266 354 KCEYVVSGSD----------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADR 419 (538)
Q Consensus 354 ~~~~l~~gs~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~-~~dg~v~vw~~~~~~~ 419 (538)
+++.|+.... .+.|.++|+.+++.++++... ..+.+|+++|+++ +|+++ ..++.|.|+|..+++.
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 8888777543 257999999999999988753 3789999999997 66664 5589999999998765
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=1.8e-15 Score=135.36 Aligned_cols=223 Identities=9% Similarity=0.066 Sum_probs=165.2
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc-CcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
.+++|++++.++.|++||.++|+.+ .++..+. ..+.+++++|+|++|++ .++.|+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~---------------------w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~ 60 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV---------------------WEYPLEKGWECNSVAATKAGEILFS--YSKGAKM 60 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE---------------------EEEECCTTCCCCEEEECTTSCEEEE--CBSEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE---------------------EEeCCCccCCCcCeEECCCCCEEEe--CCCCEEE
Confidence 4578999999999999999899985 3444454 47889999999999994 4678999
Q ss_pred EECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC-CCcEEEeecccCceeeeeecc----ccCCCcEEEEEcCCC
Q 009266 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLG----KHQGRAHKLAIEPGS 162 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~ 162 (538)
|+. +|+.+.++..++...+.++.+.| +|++|++.+. .+.|..++. +++.+....+. .+......+++.+++
T Consensus 61 ~d~-~G~~~W~~~~~~~~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 61 ITR-DGRELWNIAAPAGCEMQTARILP--DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG 136 (276)
T ss_dssp ECT-TSCEEEEEECCTTCEEEEEEECT--TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred ECC-CCCEEEEEcCCCCccccccEECC--CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC
Confidence 998 89988888443345788999999 9999999887 777877775 45555443322 222345567888998
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
++|++...++.|.+||.. ++.+..+.... .+.++.+.++ +++++++..++.|..++..++++....
T Consensus 137 -~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-----------~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 137 -NYLVPLFATSEVREIAPN-GQLLNSVKLSG-----------TPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp -CEEEEETTTTEEEEECTT-SCEEEEEECSS-----------CCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred -CEEEEecCCCEEEEECCC-CCEEEEEECCC-----------CccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 688999999999999988 88888876431 3455677786 788888888889999999887754332
Q ss_pred CCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC
Q 009266 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (538)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (538)
.. ..........+.+++..++|.++++...
T Consensus 203 ~~---------~~~~~~~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 203 NA---------NDIEGVQLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp EG---------GGSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred cC---------CCCCCccccccccceEcCCCCEEEEecc
Confidence 10 0000111235788999999998888753
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=1.2e-15 Score=140.88 Aligned_cols=265 Identities=10% Similarity=0.020 Sum_probs=180.6
Q ss_pred CCCeEEEEECCCCceeeeecc-----CCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEE
Q 009266 81 DDRRVILWDWKTERVKLSFHS-----GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~ 155 (538)
.++.|.+||..+++....+.. ........+++. ++.++++...++.|.+||..+++.+.. +. .......
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~--i~-~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGR--IT-GFTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEE--EE-CCSSEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEE--cC-CCCCCcE
Confidence 478999999999987655421 122346777774 566666777789999999998887665 32 3466889
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCCeEEEEEcC
Q 009266 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIR 234 (538)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~ 234 (538)
+++++++ +++++...++.|.+||+.+++....+....... .......+++ . ++.++++.. .++.|.+||+.
T Consensus 89 i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~-----~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 89 IHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDM-----ESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp EEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT-----TTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETT
T ss_pred EEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccc-----cCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECC
Confidence 9999988 666666578999999999998776665432100 0012345666 3 355555554 48899999999
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC-----------CeEEEeeccCCCCCCCCCCCCc
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----------EFIYLFTQDMGLGPNPPPSSPV 303 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------~~i~~~d~~~~~~~~~~~~~~~ 303 (538)
++++...... ......++++|+|++++++.. +.|++||..++
T Consensus 161 t~~~~~~i~~----------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----------- 213 (328)
T 3dsm_A 161 TDKVVDELTI----------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----------- 213 (328)
T ss_dssp TTEEEEEEEC----------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-----------
T ss_pred CCeEEEEEEc----------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-----------
Confidence 8765432111 123457889999998777653 57999998763
Q ss_pred cccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEE--e
Q 009266 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV--I 381 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~--~ 381 (538)
.....+..... .....++| +|++++|+++.. .|.+||+.+++.... +
T Consensus 214 ---------------------------~v~~~~~~~~g-~~p~~la~-~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~ 262 (328)
T 3dsm_A 214 ---------------------------TVEKQFKFKLG-DWPSEVQL-NGTRDTLYWINN--DIWRMPVEADRVPVRPFL 262 (328)
T ss_dssp ---------------------------EEEEEEECCTT-CCCEEEEE-CTTSCEEEEESS--SEEEEETTCSSCCSSCSB
T ss_pred ---------------------------eEEEEEecCCC-CCceeEEE-ecCCCEEEEEcc--EEEEEECCCCceeeeeee
Confidence 22223321111 12678998 999998888765 899999988876421 2
Q ss_pred ecCcceeeEEeecC-CCCeEEEe----ecCCceEEecCCCCc
Q 009266 382 EADRHVVNCIEPHP-HSTVLASS----GIESDIKILTPNAAD 418 (538)
Q Consensus 382 ~~h~~~v~~~~~s~-~~~~l~s~----~~dg~v~vw~~~~~~ 418 (538)
..+...+..++++| +++++++. ..++.|.+|+.. ++
T Consensus 263 ~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 263 EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 22245689999999 55556665 578999999998 44
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=3.4e-15 Score=136.10 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=166.5
Q ss_pred eEEcCCcCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 55 AKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+ ..+...+.+++++| ++.++++...++.|.+|
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~--dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNK--QGHLIACSHGLRRLERQ 95 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECT--TCCEEEEETTTTEEEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECC--CCcEEEEecCCCeEEEE
Confidence 34555677789999999998 7888888999999999877 3444 45677899999999 99988877777899999
Q ss_pred ecccCceeeeee-cc-ccCCCcEEEEEcCCCCcEEEE----Ec-------------CCCcEEEEecCCCCeeeeeeeccc
Q 009266 134 QILERGGVETKL-LG-KHQGRAHKLAIEPGSPHVFYT----CG-------------EDGLVQHFDLRTGAATELFTCRPI 194 (538)
Q Consensus 134 d~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~l~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~ 194 (538)
+..+++...... .. .....+..+++.|+| +++++ ++ ..+.|..++.. ++.. .+..
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~--- 169 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIR--- 169 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEEC---
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eeec---
Confidence 997776533211 11 122356789999999 67776 32 12456666554 3332 2221
Q ss_pred CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC-Cccc-cCCCCCCCCCcccCCCCccCCCccceEEEEEcCC
Q 009266 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR-KYKW-DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (538)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 272 (538)
.......++|+|+ ++++++.+.++.|++|++. .+++ ... ... ..+...+.+++++++
T Consensus 170 -------~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~~------------~~~-~~~~~~p~~i~~d~~ 228 (296)
T 3e5z_A 170 -------DRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQG------------VHF-TVEPGKTDGLRVDAG 228 (296)
T ss_dssp -------CCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEEE------------EEE-CCSSSCCCSEEEBTT
T ss_pred -------CCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCCC------------eEe-eCCCCCCCeEEECCC
Confidence 1224678999998 5666878888999999987 3321 000 001 112345667999999
Q ss_pred CCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEec
Q 009266 273 SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (538)
Q Consensus 273 ~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s 352 (538)
|+++++. .+.|.+|+... ..+..+..+.. +.+++|-+
T Consensus 229 G~l~v~~-~~~v~~~~~~g---------------------------------------~~~~~~~~~~~---~~~~~f~~ 265 (296)
T 3e5z_A 229 GLIWASA-GDGVHVLTPDG---------------------------------------DELGRVLTPQT---TSNLCFGG 265 (296)
T ss_dssp SCEEEEE-TTEEEEECTTS---------------------------------------CEEEEEECSSC---CCEEEEES
T ss_pred CCEEEEc-CCeEEEECCCC---------------------------------------CEEEEEECCCC---ceeEEEEC
Confidence 9987777 77999999752 22334444333 66778745
Q ss_pred CCCcEEEEeccCCeEEEeeccCcce
Q 009266 353 PKCEYVVSGSDCGRIFIWKKKGGEL 377 (538)
Q Consensus 353 ~~~~~l~~gs~dg~i~iwd~~~~~~ 377 (538)
|+++.|++++.+ .|..++.++.++
T Consensus 266 ~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 266 PEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp TTSCEEEEEETT-EEEEEECSCCBC
T ss_pred CCCCEEEEEcCC-eEEEEEcccccc
Confidence 899988888765 455556655544
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.70 E-value=1.5e-13 Score=125.54 Aligned_cols=281 Identities=9% Similarity=0.014 Sum_probs=190.4
Q ss_pred cCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 58 ~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
......+.+|++.++|+++++...++.|.+|+.. ++........+...+..|++.+ ++.++++....+.|..|+..
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-
Confidence 3445688999999999988888778999999987 6554322233446789999998 88877777767889999987
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
++.. ...+......+..+++.+++ +++++....+.|..|+.. ++.. .+.... ....+..+++.++ ++
T Consensus 92 g~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~--------~~~~~~~i~~d~~-g~ 158 (300)
T 2qc5_A 92 GGFT-EYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-EYDLPN--------KGSYPAFITLGSD-NA 158 (300)
T ss_dssp SCEE-EEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-EEECSS--------TTCCEEEEEECTT-SS
T ss_pred CCeE-EecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-EccCCC--------CCCCceeEEECCC-CC
Confidence 4432 22233344678999999988 677777767899999987 5443 222111 1125788999997 67
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPN 296 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~ 296 (538)
++++....+.|..|+. .++.... ........+.++++.++|+++++.. .+.|.+|+.. +..
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~~--------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-- 220 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEEY--------------PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEI-- 220 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEE--------------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCE--
T ss_pred EEEEecCCCeEEEECC-CCcEEEe--------------eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcE--
Confidence 7776666788999987 4432110 0111234688999999998877766 4579999872 210
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
....+..... .+.++++ +++|++.++....+.|.+|+. +++
T Consensus 221 -----------------------------------~~~~~~~~~~--~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~ 261 (300)
T 2qc5_A 221 -----------------------------------SEYDIPTPNA--RPHAITA-GKNSEIWFTEWGANQIGRITN-DNT 261 (300)
T ss_dssp -----------------------------------EEEECSSTTC--CEEEEEE-CSTTCEEEEETTTTEEEEECT-TSC
T ss_pred -----------------------------------EEEECCCCCC--CceEEEE-CCCCCEEEeccCCCeEEEECC-CCc
Confidence 0000111112 2678888 999997777777789999998 454
Q ss_pred eeEE-eecCcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 377 LIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 377 ~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
.... +......+.++++.++|+++++.. . .|..+++
T Consensus 262 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 262 IQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 4322 233345689999999998777665 4 6666654
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=1.1e-14 Score=130.76 Aligned_cols=241 Identities=9% Similarity=0.015 Sum_probs=163.1
Q ss_pred CeEEEEEeecCCCceEE-EEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC
Q 009266 106 NVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 184 (538)
...+|++.+ ++.+++ +...++.|.+|+..+...... ...+...+.+|++.+++ +++++.. ++.|.+|+..+..
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGSTGTTVL--PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSSSCEEEEECC-----EEC--CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECC--CCCEEEEccCCCCcEEEecCCCcccceE--eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce
Confidence 678899999 888776 546788999999765443221 22334568899999998 5666666 8899999987654
Q ss_pred eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccce
Q 009266 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (538)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (538)
.. .+... ....+..++++|+ ++++++...++.|.+|+..+.... .........+
T Consensus 99 ~~-~~~~~---------~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~p 152 (270)
T 1rwi_B 99 QT-VLPFD---------GLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQT---------------VLPFTGLNDP 152 (270)
T ss_dssp CE-ECCCC---------SCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSCE---------------ECCCCSCCSC
T ss_pred Ee-eeecC---------CcCCCcceEECCC-CCEEEEECCCCEEEEEECCCceeE---------------eeccccCCCc
Confidence 32 22111 1125789999997 677777777889999975443210 0011112356
Q ss_pred EEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccce
Q 009266 265 TGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (538)
Q Consensus 265 ~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
.+++++|+|+++++.. .+.|++|+....... .....+..
T Consensus 153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~--------------------------------------~~~~~~~~-- 192 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV--------------------------------------VLPFTDIT-- 192 (270)
T ss_dssp CCEEECTTCCEEEEEGGGTEEEEECTTTCCEE--------------------------------------ECCCSSCC--
T ss_pred eeEEEeCCCCEEEEECCCCEEEEEecCCCceE--------------------------------------eecccCCC--
Confidence 7899999999777765 568999997653110 00001111
Q ss_pred eeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcc
Q 009266 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 344 ~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
.+..+++ +++|+++++...++.|++|+............+...+.+++++|+|+++++...++.|+++++...+.
T Consensus 193 ~p~~i~~-d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 193 APWGIAV-DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SEEEEEE-CTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CceEEEE-CCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 2678888 99998888887889999999866544332223335789999999999889999999999999876654
No 195
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=4.2e-15 Score=138.09 Aligned_cols=239 Identities=10% Similarity=0.058 Sum_probs=164.5
Q ss_pred CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 184 (538)
..|.+++|+| ++..++..+.++.++.|. ...... +..+...+.+++|+|++ ++++++..++.|.+|++.+++
T Consensus 6 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSG--KSNSAVPIISESELQTIT---AEPWLE--ISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCG--GGGCSSCCCCGGGSCEEE---CEEEEE--EESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecC--CccceeEEeecccCcccc---cceeEE--EeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc
Confidence 4578889998 777787778888999992 333322 55566678999999998 677788889999999998887
Q ss_pred eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC----CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC
Q 009266 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (538)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (538)
....... ....+.+++++|+ ++++++...+ +.|.+|+..+++.... . . ....
T Consensus 78 ~~~~~~~----------~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~---------~--~--~~~~ 133 (333)
T 2dg1_A 78 IKRPFVS----------HKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDI---------I--E--DLST 133 (333)
T ss_dssp EEEEEEC----------SSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCSCEEE---------E--C--SSSS
T ss_pred EEEEeeC----------CCCCcceEEECCC-CcEEEEeCCCCCCCceEEEEeCCCCEEEEE---------E--c--cCcc
Confidence 6544321 1225899999998 6777776666 6899999877642100 0 0 0012
Q ss_pred ccceEEEEEcCCCCEEEEEcC-------CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCC
Q 009266 261 QVGITGLAFSDQSELLVSYND-------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
...+..++++|+|+++++... +.|+.|+..++ ..
T Consensus 134 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~---------------------------------------~~ 174 (333)
T 2dg1_A 134 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR---------------------------------------TV 174 (333)
T ss_dssp CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC---------------------------------------CE
T ss_pred CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC---------------------------------------EE
Confidence 356899999999998887663 35666654431 11
Q ss_pred ceeeccccceeeeEEEEecCCCcEEE-EeccCCeEEEeeccC-cceeEEe--------ecCcceeeEEeecCCCCeEEEe
Q 009266 334 QVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKG-GELIRVI--------EADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 334 ~~~~~~~~~~~i~~v~~~s~~~~~l~-~gs~dg~i~iwd~~~-~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
..+..... .+..++| +|+|++|+ +.+.++.|++|++.+ ++.+..+ .++ ..+..++++++++++++.
T Consensus 175 ~~~~~~~~--~~~~i~~-~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~ 250 (333)
T 2dg1_A 175 TPIIQNIS--VANGIAL-STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAM 250 (333)
T ss_dssp EEEEEEES--SEEEEEE-CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEE
T ss_pred EEeecCCC--cccceEE-CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEE
Confidence 12222212 2677888 99998654 556678999999863 4333221 122 467889999999988888
Q ss_pred ecCCceEEecCCCCc
Q 009266 404 GIESDIKILTPNAAD 418 (538)
Q Consensus 404 ~~dg~v~vw~~~~~~ 418 (538)
..++.|++|+.....
T Consensus 251 ~~~~~v~~~d~~g~~ 265 (333)
T 2dg1_A 251 YGQGRVLVFNKRGYP 265 (333)
T ss_dssp ETTTEEEEECTTSCE
T ss_pred cCCCEEEEECCCCCE
Confidence 888999999986443
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=1.8e-14 Score=129.41 Aligned_cols=241 Identities=11% Similarity=0.027 Sum_probs=163.0
Q ss_pred cEEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCcee
Q 009266 63 CVNTVSFNTDGDILI-SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~-t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 141 (538)
...+|+++|+|++++ +.+.++.|.+|+..++.... +...+...+.+|++.+ ++.++++.. ++.|.+|+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~--~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDG--AGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECT--TCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECC--CCCEEEEcC-CCEEEEEeCCCceEe
Confidence 788999999999777 55778899999976554322 2233445788999998 888666655 889999998755432
Q ss_pred eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
.. .......+..+++.|++ +++++...++.|.+|+..+......... ....+..++++|+ ++++++
T Consensus 101 ~~--~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~p~~i~~~~~-g~l~v~ 166 (270)
T 1rwi_B 101 VL--PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFT----------GLNDPDGVAVDNS-GNVYVT 166 (270)
T ss_dssp EC--CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCC----------SCCSCCCEEECTT-CCEEEE
T ss_pred ee--ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccc----------cCCCceeEEEeCC-CCEEEE
Confidence 21 11233568899999998 6777777788999997655433221110 1124678999997 677777
Q ss_pred EeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCC
Q 009266 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPS 300 (538)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~ 300 (538)
....+.|.+|+........ ........+.+++++++|.++++.. .+.|++|+......
T Consensus 167 ~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~------ 225 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQVV---------------LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS------ 225 (270)
T ss_dssp EGGGTEEEEECTTTCCEEE---------------CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC------
T ss_pred ECCCCEEEEEecCCCceEe---------------ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc------
Confidence 7778899999987653211 0011125688999999997777765 56899999764211
Q ss_pred CCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcce
Q 009266 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (538)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~ 377 (538)
......+.. .+.++++ +++|+++++...+++|++|++...+.
T Consensus 226 --------------------------------~~~~~~~~~--~p~~i~~-~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 226 --------------------------------TVLPFTGLN--TPLAVAV-DSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp --------------------------------EECCCCSCS--CEEEEEE-CTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred --------------------------------eeeccCCCC--CceeEEE-CCCCCEEEEECCCCEEEEEcCCCccc
Confidence 000011111 2678888 99999889999999999999876554
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=2.3e-13 Score=124.11 Aligned_cols=230 Identities=11% Similarity=0.059 Sum_probs=160.2
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
.++++++++...++.|.+|+.. ++.. ...+..+...+.+|++.++|.++++....+.|.
T Consensus 23 d~~g~l~v~~~~~~~v~~~d~~-~~~~--------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 23 SDKGKVWITQHKANMISCINLD-GKIT--------------------EYPLPTPDAKVMCLTISSDGEVWFTENAANKIG 81 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-CCEE--------------------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEecCCCcEEEEcCC-CCeE--------------------EecCCcccCceeeEEECCCCCEEEeCCCCCeEE
Confidence 4667777766667889999887 5542 111223457799999999999888887788999
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEE
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
.|+.. ++............+..|++.| ++.++++....+.|.+|+. ++.... .....+...+..+++.+++ +++
T Consensus 82 ~~~~~-g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g-~l~ 155 (299)
T 2z2n_A 82 RITKK-GIIKEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDN-ALW 155 (299)
T ss_dssp EECTT-SCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTS-CEE
T ss_pred EECCC-CcEEEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCC-CEE
Confidence 99976 4432211123456789999998 8888887777889999998 444332 2233345678999999998 677
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 246 (538)
++....+.|.+|+. +++... +.... ....+..++++++ ++++++....+.|.+|+. +++....
T Consensus 156 v~~~~~~~i~~~~~-~g~~~~-~~~~~--------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~~----- 218 (299)
T 2z2n_A 156 FTENQNNAIGRITE-SGDITE-FKIPT--------PASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEITEF----- 218 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEE-----
T ss_pred EEeCCCCEEEEEcC-CCcEEE-eeCCC--------CCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEEEE-----
Confidence 77777789999998 665443 21111 1124778999997 677777667889999998 5542110
Q ss_pred CCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeec
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (538)
........+.+++++++|+++++.. .+.|.+|+.
T Consensus 219 ---------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 219 ---------KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp ---------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred ---------ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 0112245688999999999777764 578999997
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.68 E-value=2e-13 Score=127.64 Aligned_cols=293 Identities=11% Similarity=-0.004 Sum_probs=185.5
Q ss_pred EEcCCCCEEEEecC--CC---eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe----------CCCcEEE
Q 009266 68 SFNTDGDILISGSD--DR---RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRH 132 (538)
Q Consensus 68 ~~s~~g~~l~t~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~----------~dg~v~v 132 (538)
...|+++++..... .. +|.+||..+++.+.++..+ ..+ .++++| ++++|+++. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECC--CCCEEEEEeccccccccCCCCCeEEE
Confidence 34577777766653 22 8899999999988777433 233 899999 999999886 3678999
Q ss_pred eecccCceeeeeecc--cc---CCCcEEEEEcCCCCcEEEEEc-C-CCcEEEEecCCCCeeee-eeecccCCCCCcceee
Q 009266 133 AQILERGGVETKLLG--KH---QGRAHKLAIEPGSPHVFYTCG-E-DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVV 204 (538)
Q Consensus 133 wd~~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 204 (538)
||..+.+.+....+. .+ ......++|+|+++ +|+++. . .+.|.++| .+++.+.. +...
T Consensus 102 iD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------------ 167 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------------ 167 (373)
T ss_pred EECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC------------
Confidence 999887766543332 00 12356899999995 556554 3 57899999 99887665 4321
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC-EEEEEcCCe
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEF 283 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~ 283 (538)
.++.+.|.+.+.+++.+.+|.+.+++. +++....... ...............+.+++. +++....+.
T Consensus 168 --~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 168 --TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV---------GAMLTAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred --ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec---------cccccCCcceeecceeEecCCEEEEEcCCce
Confidence 224555665667788889999999999 6653311000 000011111122345666544 444445668
Q ss_pred EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc
Q 009266 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (538)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~ 363 (538)
+.+.|+.......... .... ............ ....+.+ +|+++.|+++..
T Consensus 236 v~vid~~~~~~~v~~~-------------------------~~~~-~~~~~~~~~~p~--g~~~~~~-s~d~~~lyV~~~ 286 (373)
T 2mad_H 236 ILQADISAAGATNKAP-------------------------IDAL-SGGRKADTWRPG--GWQQVAY-LKSSDGIYLLTS 286 (373)
T ss_pred EEEEeccCCcceEeee-------------------------eeec-CCcccccceecC--ceEeEEE-CCCCCEEEEEec
Confidence 8898886431100000 0000 000000000011 1334566 999988777543
Q ss_pred ----------CCeEEEeeccCcceeEEeecCcceeeEEeecCCCC-eEEEee-cCCceEEecCCCCcccc
Q 009266 364 ----------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRAT 421 (538)
Q Consensus 364 ----------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~v~vw~~~~~~~~~ 421 (538)
.+.|.++|+.+++.+.++.. .....+++|+|+++ +|+++. .++.|.|||+.+++...
T Consensus 287 ~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 287 EQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred cCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 35899999999999998864 33689999999999 788877 58999999999887643
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.67 E-value=5.7e-14 Score=131.62 Aligned_cols=291 Identities=14% Similarity=0.090 Sum_probs=188.0
Q ss_pred CCCCceEEeeccC-----CceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEec-
Q 009266 7 NNNNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS- 80 (538)
Q Consensus 7 ~~~~~~l~t~~~d-----~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~- 80 (538)
+++++++++.... ++|.+.|..+++.+. ++.--..+ .++++|+|++|+.+.
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~---------------------~I~vG~~P--gia~SpDgk~lyVan~ 137 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILG---------------------MTDGGFLP--HPVAAEDGSFFAQAST 137 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEE---------------------EEEECSSC--EEEECTTSSCEEEEEE
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEE---------------------EEECCCCC--ceEECCCCCEEEEEec
Confidence 5667777766543 699999999988862 23222334 799999999888775
Q ss_pred ---------CCCeEEEEECCCCceeeeeccC------CCCCeEEEEEeecCCCceEEEEeC--CCcEEEeecccCceeee
Q 009266 81 ---------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET 143 (538)
Q Consensus 81 ---------~d~~i~iw~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~~l~s~~~--dg~v~vwd~~~~~~~~~ 143 (538)
.++.|.++|..+++.+.++..+ .......++|+| +|++|+++.. .+.|.+.|+.+.+.+..
T Consensus 138 ~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 138 VFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence 3678999999999988776432 123456789999 9999999874 57899999999887765
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
..+.+ +....|.++..+++.+.+|.+.+.++.+++...... ... .... .. ....+.|.+++ ..++...
T Consensus 216 I~v~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~-~v~~--~p-~~~~~~~~~dg-~~~~~~s 283 (426)
T 3c75_H 216 LDVPD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVF-HTED--EL-LINHPAFSLRS-GRLVWPT 283 (426)
T ss_dssp EECCS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCC-SCTT--SC-BCSCCEECTTT-CEEEEEB
T ss_pred EEcCC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eee-ccCC--Cc-eeeEeeecCCC-CEEEEEe
Confidence 43322 134455555667777788888888886555443211 000 0000 00 11235678874 4555556
Q ss_pred CCCeEEEEEcCCcccc--CCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-----------CCeEEEeecc
Q 009266 224 SDEYTRLYDIRKYKWD--GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQD 290 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----------~~~i~~~d~~ 290 (538)
..+.|.+.|+...... ........ ..............++++|+++.|.+.. .+.|.++|+.
T Consensus 284 ~~g~V~ViD~~~~~~~v~~~~~~~~~-----~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 284 YTGKIFQADLTAEGATFRAPIEALTE-----AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp TTSEEEEEEECSSCEEECCCEESSCT-----TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred CCCcEEEEeccCCceEEeeeeeeccc-----cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 7889999998654321 11000000 0000000111222368999987666543 2369999988
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCc-EEEEec-cCCeEE
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRIF 368 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~~gs-~dg~i~ 368 (538)
+ .+.+.++.... ....+.| +|+|+ ++++.. .++.|.
T Consensus 359 T--------------------------------------~kvv~~I~vg~---~P~gia~-spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 359 T--------------------------------------GERINKIELGH---EIDSINV-SQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp T--------------------------------------CCEEEEEEEEE---EECEEEE-CCSSSCEEEEEETTTTEEE
T ss_pred C--------------------------------------CeEEEEEECCC---CcCeEEE-ccCCCEEEEEEcCCCCeEE
Confidence 7 33444444322 2678898 99999 888877 589999
Q ss_pred EeeccCcceeEEe
Q 009266 369 IWKKKGGELIRVI 381 (538)
Q Consensus 369 iwd~~~~~~~~~~ 381 (538)
|+|+.+++.++++
T Consensus 397 VID~~t~kvv~tI 409 (426)
T 3c75_H 397 IYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEe
Confidence 9999999999887
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.66 E-value=2.7e-13 Score=124.65 Aligned_cols=249 Identities=16% Similarity=0.167 Sum_probs=159.6
Q ss_pred cCCcCcEEEEEEcCCCCEEEE-------ecCCCeEEEEECCCCceeeeec---cCCCCCeEEEEEeecCC-CceEEEEeC
Q 009266 58 DKHRGCVNTVSFNTDGDILIS-------GSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTD-DRSIVTCAA 126 (538)
Q Consensus 58 ~~h~~~v~~~~~s~~g~~l~t-------~~~d~~i~iw~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~-~~~l~s~~~ 126 (538)
...-....+++|+++|+++++ +..++.|.+|+..+++...... .++...+..+++.+ + +.++++..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~--~~g~l~v~~~- 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DANQLFVADM- 90 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSSEEEEEET-
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec--CCCcEEEEEC-
Confidence 344456789999999998888 6678899999988877533221 12456789999998 8 65555444
Q ss_pred CCcEEEeecccCceeee-eec--cccCCCcEEEEEcCCCCcEEEEEcCC---------------CcEEEEecCCCCeeee
Q 009266 127 DGQVRHAQILERGGVET-KLL--GKHQGRAHKLAIEPGSPHVFYTCGED---------------GLVQHFDLRTGAATEL 188 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~ 188 (538)
.+.|.+|+.. ++.... ... ......+.++++.+++ +++++...+ +.|..|+.. ++....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 4578899987 544321 111 1122458899999998 566665544 456666654 333222
Q ss_pred eeecccCCCCCcceeeeeEEEEEc----CCCCcE-EEEEeCCCeEEEEEcC-CccccCCCCCCCCCcccCCCCccCCCcc
Q 009266 189 FTCRPIDDRRNYMTVVNLNAIAID----PRNANL-FAVAGSDEYTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (538)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (538)
.. .......++|+ |+ ++. +++...++.|.+|++. .++
T Consensus 168 ~~-----------~~~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~------------------------- 210 (314)
T 1pjx_A 168 DT-----------AFQFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAK------------------------- 210 (314)
T ss_dssp EE-----------EESSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTE-------------------------
T ss_pred cc-----------CCCCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCc-------------------------
Confidence 11 11134667777 76 433 3444456777777754 111
Q ss_pred ceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccc-c
Q 009266 263 GITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-N 341 (538)
Q Consensus 263 ~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 341 (538)
+... .++ ..+..+. .
T Consensus 211 -~~~~-----------------~~~----------------------------------------------~~~~~~~~~ 226 (314)
T 1pjx_A 211 -IENK-----------------KVW----------------------------------------------GHIPGTHEG 226 (314)
T ss_dssp -EEEE-----------------EEE----------------------------------------------EECCCCSSC
T ss_pred -cccc-----------------eEE----------------------------------------------EECCCCCCC
Confidence 0000 000 0011111 1
Q ss_pred ceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCC-eEEEeecCCceEEecCCC
Q 009266 342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNA 416 (538)
Q Consensus 342 ~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~vw~~~~ 416 (538)
.+..+++ +++|+++++...++.|.+|+..+++.+..+..+...+.+++|+|+++ ++++...++.|.+|++..
T Consensus 227 --~p~~i~~-d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 227 --GADGMDF-DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp --EEEEEEE-BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred --CCCceEE-CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 2556787 99999888877788999999987888888877777899999999999 445556678899998865
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=9.7e-14 Score=124.07 Aligned_cols=191 Identities=9% Similarity=0.040 Sum_probs=139.6
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeccCCC-CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC
Q 009266 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (538)
Q Consensus 72 ~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 150 (538)
.+++|++++.++.|++|+..+|+.+.++. .+. ..+.+++++| +|++|+ +.++.|..|+. +++.+..... ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~p--dG~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~ 76 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATK--AGEILF--SYSKGAKMITR-DGRELWNIAA-PAG 76 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECT--TSCEEE--ECBSEEEEECT-TSCEEEEEEC-CTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECC--CCCEEE--eCCCCEEEECC-CCCEEEEEcC-CCC
Confidence 46799999999999999999999998884 444 5789999999 999888 34678999998 7777665332 123
Q ss_pred CCcEEEEEcCCCCcEEEEEcC-CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEE
Q 009266 151 GRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 229 (538)
..+.++.+.|++ +++++.+. .+.|..++. +++.+..+...... .+ .......+++.++ ++++++...++.|.
T Consensus 77 ~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~--~~--~~~~~~~v~~~~~-G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 77 CEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGI--ER--PHAQFRQINKNKK-GNYLVPLFATSEVR 149 (276)
T ss_dssp CEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSC--SS--GGGSCSCCEECTT-SCEEEEETTTTEEE
T ss_pred ccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC--Cc--ccccccCceECCC-CCEEEEecCCCEEE
Confidence 467889999999 67777666 778888885 67777666543211 01 1113445677886 78999999999999
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCC
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGL 293 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~ 293 (538)
.||.. +++...... ...+.++.+.++|.+|+++..+ +|..++..+++
T Consensus 150 ~~d~~-G~~~w~~~~----------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 150 EIAPN-GQLLNSVKL----------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp EECTT-SCEEEEEEC----------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred EECCC-CCEEEEEEC----------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 99987 764332111 1234567788999998887755 89999988753
No 202
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.64 E-value=1.9e-13 Score=140.35 Aligned_cols=239 Identities=8% Similarity=-0.016 Sum_probs=158.4
Q ss_pred CCCCCCceEEeeccCC-----ceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEe
Q 009266 5 SNNNNNKRARTSVDKA-----LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~-----~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~ 79 (538)
.++|++++||.+..++ .|+||++.+|+.+. ..+.. ..+..++|+|+|+.|+.+
T Consensus 131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~--------------------~~~~~--~~~~~~~wspDg~~l~~~ 188 (710)
T 2xdw_A 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--------------------DVLER--VKFSCMAWTHDGKGMFYN 188 (710)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--------------------EEEEE--ECSCCEEECTTSSEEEEE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc--------------------ccccC--cccceEEEEeCCCEEEEE
Confidence 3679999988776544 89999999888641 11221 226789999999999998
Q ss_pred cCCCe----------------EEEEECCCCcee--eeec-cCCCCCeEEEEEeecCCCceEEEEeC-----CCcEEEeec
Q 009266 80 SDDRR----------------VILWDWKTERVK--LSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQI 135 (538)
Q Consensus 80 ~~d~~----------------i~iw~~~~~~~~--~~~~-~~~~~~v~~l~~~~~~~~~~l~s~~~-----dg~v~vwd~ 135 (538)
+.++. |++|++.+++.. ..+. ..|...+..++|+| +|++|+.++. +..|.+|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~ 266 (710)
T 2xdw_A 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDL 266 (710)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEG
T ss_pred EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEEC
Confidence 87765 999999887632 2111 23556688999999 9999988765 568999999
Q ss_pred cc------CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC---CcEEEEecCCCCe--eeeeeecccCCCCCcceee
Q 009266 136 LE------RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 136 ~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~ 204 (538)
.+ +... ...+..+...+.. .|+|++..+++.+..+ +.|.+|++.++.. ...+..+. ...
T Consensus 267 ~~~~~~~~~~~~-~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------~~~ 336 (710)
T 2xdw_A 267 QQESNGITGILK-WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--------EKD 336 (710)
T ss_dssp GGSSSSSCSSCC-CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--------SSC
T ss_pred cccccccCCccc-eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC--------CCC
Confidence 86 4211 1224455555555 4888885555555433 3699999987742 22332211 112
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCe--EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE-c-
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N- 280 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~- 280 (538)
.+..++|++. +.++++...++. |++|++.+++... . +..+...+..++++|++..|+.. +
T Consensus 337 ~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~~--------------~-l~~~~~~v~~~~~s~d~~~l~~~~ss 400 (710)
T 2xdw_A 337 VLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALLK--------------I-FPLEVGSVVGYSGQKKDTEIFYQFTS 400 (710)
T ss_dssp EEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEEE--------------E-ECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred eEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEEE--------------e-cCCCCceEEEEecCCCCCEEEEEEeC
Confidence 5778889875 688888888885 5556664543211 1 11225678899999998755433 2
Q ss_pred ---CCeEEEeeccCCC
Q 009266 281 ---DEFIYLFTQDMGL 293 (538)
Q Consensus 281 ---~~~i~~~d~~~~~ 293 (538)
.+.|++|++.++.
T Consensus 401 ~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 401 FLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SSCCCEEEEEETTSSS
T ss_pred CCCCCEEEEEECCCCc
Confidence 2479999987753
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=2.3e-12 Score=117.56 Aligned_cols=230 Identities=10% Similarity=0.009 Sum_probs=159.1
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
.+++++.++...++.|.+|+.. ++.. ...+..+...+.+|++.++|+++++....+.|.
T Consensus 28 d~~g~l~v~~~~~~~v~~~~~~-~~~~--------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~ 86 (300)
T 2qc5_A 28 SEDGKVWFTQHKANKISSLDQS-GRIK--------------------EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIG 86 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEE--------------------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEcCCCCeEEEECCC-CceE--------------------EEECCCCCCcceeEEECCCCCEEEEecCCCeEE
Confidence 4567777776677888888877 5543 112233456789999999999888877788999
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEE
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
+|+.. ++............+..+++.+ ++.++++....+.|..|+.. ++... ..+......+..+++.+++ +++
T Consensus 87 ~~d~~-g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~~~~~~~~i~~d~~g-~l~ 160 (300)
T 2qc5_A 87 KLSKK-GGFTEYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GTIYE-YDLPNKGSYPAFITLGSDN-ALW 160 (300)
T ss_dssp EECTT-SCEEEEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTS-SEE
T ss_pred EECCC-CCeEEecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-CCEEE-ccCCCCCCCceeEEECCCC-CEE
Confidence 99987 6553222233446789999998 88888777778899999986 44332 2233345678999999998 577
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCC
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 246 (538)
++....+.|.+|+. +++... +.... ....+..+++.++ ++++++....+.|.+|+. +++....
T Consensus 161 v~~~~~~~i~~~~~-~g~~~~-~~~~~--------~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~~----- 223 (300)
T 2qc5_A 161 FTENQNNSIGRITN-TGKLEE-YPLPT--------NAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISEY----- 223 (300)
T ss_dssp EEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEE-----
T ss_pred EEecCCCeEEEECC-CCcEEE-eeCCC--------CCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEEE-----
Confidence 77766788999998 555433 22111 1125788999997 677777767788999997 3332110
Q ss_pred CCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeec
Q 009266 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (538)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (538)
........+.++++.++|+++++.. .+.|.+|+.
T Consensus 224 ---------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 224 ---------DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp ---------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred ---------ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 0111235688999999999777765 468999987
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=7.6e-14 Score=143.91 Aligned_cols=249 Identities=8% Similarity=0.009 Sum_probs=151.2
Q ss_pred CCcCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCc----
Q 009266 59 KHRGCVNTVSFNTDGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (538)
Q Consensus 59 ~h~~~v~~~~~s~~g~~l~t~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~---- 129 (538)
+|...+..++|||+|++||.++.+ ..|++|++.+++.+... .+...+..++|+| + +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wsp--D-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLG--N-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEEST--T-SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEEC--C-CEEEEEEecCccccc
Confidence 344578999999999999887543 46999999999875432 1222346789999 9 88888876554
Q ss_pred ----------EEEeecccCcee--eeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----CcEEEEecCCC--Ceeeeee
Q 009266 130 ----------VRHAQILERGGV--ETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTG--AATELFT 190 (538)
Q Consensus 130 ----------v~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~--~~~~~~~ 190 (538)
|++|++.++... .......+...+..+.|+|+|+ +|+..+.+ ..|++|++.++ +....+.
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 889998766532 2211223334588999999995 55554433 47999998876 3122232
Q ss_pred ecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEE
Q 009266 191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (538)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (538)
.... .+.... +|+ +..|+..+. .+.|.+|++.++. ...
T Consensus 314 ~~~~----------~~~~~~-~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~------------------------~~~-- 355 (741)
T 1yr2_A 314 PDLK----------AQWDFV-DGV-GDQLWFVSGDGAPLKKIVRVDLSGST------------------------PRF-- 355 (741)
T ss_dssp CSSS----------SCEEEE-EEE-TTEEEEEECTTCTTCEEEEEECSSSS------------------------CEE--
T ss_pred CCCC----------ceEEEE-ecc-CCEEEEEECCCCCCCEEEEEeCCCCc------------------------ccc--
Confidence 2110 122222 355 344444443 2335555543310 000
Q ss_pred EEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeee
Q 009266 267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (538)
Q Consensus 267 ~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (538)
...+..+.. .+.
T Consensus 356 ------------------------------------------------------------------~~l~~~~~~--~l~ 367 (741)
T 1yr2_A 356 ------------------------------------------------------------------DTVVPESKD--NLE 367 (741)
T ss_dssp ------------------------------------------------------------------EEEECCCSS--EEE
T ss_pred ------------------------------------------------------------------EEEecCCCC--eEE
Confidence 001111111 145
Q ss_pred EEEEecCCCcEEEEeccCCeEEEeecc-CcceeEEeecC-cceeeEEeecCCCCeEEE----eecCCceEEecCCCCccc
Q 009266 347 GVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEAD-RHVVNCIEPHPHSTVLAS----SGIESDIKILTPNAADRA 420 (538)
Q Consensus 347 ~v~~~s~~~~~l~~gs~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s----~~~dg~v~vw~~~~~~~~ 420 (538)
.+.+ + ++.++++...++..+||.+. +++.+..+..+ .+.|..++++|+++.|+. ....++|++|++.+++..
T Consensus 368 ~~~~-~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~ 445 (741)
T 1yr2_A 368 SVGI-A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT 445 (741)
T ss_dssp EEEE-E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred EEEE-E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 5666 4 56678888888887777654 46666666653 577899999999986662 234578999999877643
Q ss_pred c
Q 009266 421 T 421 (538)
Q Consensus 421 ~ 421 (538)
.
T Consensus 446 ~ 446 (741)
T 1yr2_A 446 P 446 (741)
T ss_dssp E
T ss_pred E
Confidence 3
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.61 E-value=2.6e-13 Score=127.17 Aligned_cols=290 Identities=14% Similarity=0.071 Sum_probs=183.4
Q ss_pred CCCCEEEEecC-C----CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe----------CCCcEEEeec
Q 009266 71 TDGDILISGSD-D----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQI 135 (538)
Q Consensus 71 ~~g~~l~t~~~-d----~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~----------~dg~v~vwd~ 135 (538)
|+++++..... . +.|.++|+.+++.+.++..+. .+ .++++| ++++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 45665555433 2 699999999999988885443 34 899999 999998886 3678999999
Q ss_pred ccCceeeeeeccc-----cCCCcEEEEEcCCCCcEEEEEcC--CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 136 LERGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGE--DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 136 ~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
.+.+.+....+.+ .......++|+|+++ +|+++.. .+.|.++|+.+++.+..+.... +
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--------------~ 221 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--------------C 221 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCS--------------E
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCC--------------c
Confidence 9988776544431 123456789999995 5555543 6789999999999887776421 1
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEe
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~ 287 (538)
....|.+.+.+++.+.+|.+.+.++..++...... ..+..........+.|.+++..++..+ .+.+++.
T Consensus 222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~Vi 291 (426)
T 3c75_H 222 YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQA 291 (426)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC----------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEE
T ss_pred eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee----------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEE
Confidence 23334334566666677777777774443221000 000000001112356788877655444 6689999
Q ss_pred eccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc----
Q 009266 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---- 363 (538)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~---- 363 (538)
|+............. . ............ ....+++ +|++++|++...
T Consensus 292 D~~~~~~~v~~~~~~-------------------~----~~~~i~~g~~p~-----g~~~va~-s~dg~rlyVa~~~~~~ 342 (426)
T 3c75_H 292 DLTAEGATFRAPIEA-------------------L----TEAERADDWRPG-----GWQQTAY-HRQSDRIYLLVDQRDE 342 (426)
T ss_dssp EECSSCEEECCCEES-------------------S----CTTTGGGTEEEC-----SSSCEEE-EGGGTEEEEEEEECCT
T ss_pred eccCCceEEeeeeee-------------------c----cccccccccccC-----CceeeEE-cCCCCEEEEEeccccc
Confidence 986432100000000 0 000000000000 0223566 899887776542
Q ss_pred ------CCeEEEeeccCcceeEEeecCcceeeEEeecCCCC-eEEEee-cCCceEEecCCCCccc
Q 009266 364 ------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRA 420 (538)
Q Consensus 364 ------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~v~vw~~~~~~~~ 420 (538)
.+.|.++|+.+++.+.++... .....++|+|+++ +|+++. .++.|.|+|+.+.+..
T Consensus 343 gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 343 WKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 357999999999999998743 3589999999999 888887 5999999999988764
No 206
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.60 E-value=2.4e-13 Score=126.29 Aligned_cols=278 Identities=10% Similarity=0.056 Sum_probs=174.3
Q ss_pred CcEEEEEEcCCCCEEEEecC--CCeEEEEECCCCceeeee------ccCCCCCeEEEEEeecCCCceEEEEeC-----CC
Q 009266 62 GCVNTVSFNTDGDILISGSD--DRRVILWDWKTERVKLSF------HSGHNDNVFQAKIMPFTDDRSIVTCAA-----DG 128 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~--d~~i~iw~~~~~~~~~~~------~~~~~~~v~~l~~~~~~~~~~l~s~~~-----dg 128 (538)
..+..|+++|+|+++++... ++.++||.+.+++. ..+ ...|...+..|++.+ +++++++-.. .+
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCCCcCCCC
Confidence 67899999999999988642 34356666655543 222 123556899999999 8876665443 57
Q ss_pred cEEEeecccCceeeeeecc----ccCCCcEEEEEcCCCCcEEEEEc---CCCcEEEEecCCCCeeeeeeecccCCCCCcc
Q 009266 129 QVRHAQILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (538)
.|.+|++.+++.+....+. .+...+..+++.|++..++++.. .++.|.+|++.+++....+..+...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~------ 167 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI------ 167 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT------
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc------
Confidence 8999999888755443332 22345789999986545556655 6789999999988765544321110
Q ss_pred eeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-
Q 009266 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN- 280 (538)
Q Consensus 202 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~- 280 (538)
.... ..+.++ +..+.+...++.++.|. ..+..|+|+|+|+.|+.+.
T Consensus 168 ~~~~---~~~~~~-g~~~~~~~~~g~~~~~~-----------------------------~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 168 APED---IDLVID-GVPVQIGQPDGTVIRPH-----------------------------LGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp SCCS---CCCEET-TEECBEECTTSCEECCC-----------------------------CCEEEEEECTTSCEEEEEES
T ss_pred cccc---cceeEC-CEEEEeccCCCceecee-----------------------------cccceeEeccCCCEEEEEeC
Confidence 0000 233344 56666667777665442 1357899999998887765
Q ss_pred CC-eEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCc--eeeccccceeeeEEEEecCCCcE
Q 009266 281 DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNFFGPKCEY 357 (538)
Q Consensus 281 ~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~v~~~s~~~~~ 357 (538)
.+ .++.++....... .+. ...... ...++... ...+++ +++|++
T Consensus 215 ~~~~l~~~~~~~~~~~-~~~-----------------------------~~~~~~~~~~~g~~g~--pdgia~-d~~G~l 261 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNL-QLT-----------------------------DAELGSKIERYSEKPI--CDGISI-DKDHNI 261 (343)
T ss_dssp SCSEEEEEEHHHHTCT-TCC-----------------------------HHHHHTTCEEEEECCS--CSCEEE-CTTCCE
T ss_pred CCCeEEEEEHHHhcCC-CCC-----------------------------hhhhhcceEecccCCC--CceEEE-CCCCCE
Confidence 33 5555553210000 000 000000 11122222 557888 999999
Q ss_pred EEEeccCCeEEEeeccCcceeEEeec-CcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 358 VVSGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 358 l~~gs~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
+++....+.|.+|+..+++....... +...+.+++|.++++++++.+..+.+.+|..
T Consensus 262 ~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~~ 319 (343)
T 2qe8_A 262 YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNA 319 (343)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGBT
T ss_pred EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccccc
Confidence 99999999999999856664333332 2346899999999998888776565555543
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=7.4e-14 Score=142.96 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=128.9
Q ss_pred CCCCCCceEE-----eeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEe
Q 009266 5 SNNNNNKRAR-----TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (538)
Q Consensus 5 ~~~~~~~~l~-----t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~ 79 (538)
.++|++++|| .|+.+.+|++|++.+|+.+.. ..+... ....++|+|+|+.|+.+
T Consensus 127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-------------------~~~~~~--~~~~~~wspDg~~l~~~ 185 (695)
T 2bkl_A 127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-------------------DVIEGG--KYATPKWTPDSKGFYYE 185 (695)
T ss_dssp EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-------------------CCBSCC--TTCCCEECTTSSEEEEE
T ss_pred EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-------------------cccCcc--cccceEEecCCCEEEEE
Confidence 3579999988 555567899999998876410 011111 12679999999999999
Q ss_pred cCCCe-------------EEEEECCCCcee--eee-ccCCCCCeEEEEEeecCCCceEEEEeCCC----cEEEeecccCc
Q 009266 80 SDDRR-------------VILWDWKTERVK--LSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADG----QVRHAQILERG 139 (538)
Q Consensus 80 ~~d~~-------------i~iw~~~~~~~~--~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg----~v~vwd~~~~~ 139 (538)
+.+.. |++|++.++... ..+ ...|...+..+.|+| +|++|+.++.++ .|.+|+..++.
T Consensus 186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 88765 999999887632 111 134556789999999 999998887665 66677654443
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEc---CCCcEEEEecCCCCe--eeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
... +..+...+....+ +++. +++.+. .++.|.+|++.++.. ...+..+. ....+..++|+ .
T Consensus 264 ~~~---l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------~~~~l~~~~~~-~ 329 (695)
T 2bkl_A 264 FRL---LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED--------SSASLLSVSIV-G 329 (695)
T ss_dssp CEE---EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC--------SSCEEEEEEEE-T
T ss_pred eEE---eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC--------CCCeEEEEEEE-C
Confidence 222 4445556666666 6674 555554 257899999987653 12222111 12246777887 3
Q ss_pred CCcEEEEEeCCCeEEEEEcC
Q 009266 215 NANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~ 234 (538)
+.++++...++..+||.+.
T Consensus 330 -~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 330 -GHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp -TEEEEEEEETTEEEEEEEE
T ss_pred -CEEEEEEEECCEEEEEEEe
Confidence 6788888888888888654
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.55 E-value=2.6e-11 Score=110.17 Aligned_cols=238 Identities=12% Similarity=0.126 Sum_probs=144.2
Q ss_pred EcCCcCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec
Q 009266 57 LDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~ 135 (538)
+..+..-.-+..|+|+ +.++++....+.|+.|+..+++. ..+ .....+.+++++| +++++++ . .+.|.+|+.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~--~~~~~~~~i~~~~--dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV--TMDAPVSSVALRQ--SGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE--ECSSCEEEEEEBT--TSSEEEE-E-TTEEEEEET
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE--eCCCceEEEEECC--CCCEEEE-E-CCeEEEEEC
Confidence 4445556778999995 55667777789999999987765 223 2346799999999 9885554 3 568999998
Q ss_pred ccCceeeeeecc--ccCCCcEEEEEcCCCCcEEEEEcCC---------CcEEEEecCC-CCeeeeeeecccCCCCCccee
Q 009266 136 LERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRT-GAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 136 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 203 (538)
.+++........ .....++.+++.|+| +++++.... ....||.+.. ++...... ..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------~~ 148 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-----------QV 148 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------EE
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-----------cc
Confidence 876543322121 122457889999999 455543221 1223333322 12111111 11
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC--CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (538)
...+.++|+|++..++++.+..+.|.+|++. ++. +..
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~--------------------------~~~--------------- 187 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ--------------------------ISN--------------- 187 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC--------------------------EEE---------------
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc--------------------------ccC---------------
Confidence 1234566666532233444445555555542 111 000
Q ss_pred CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe
Q 009266 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g 361 (538)
......+..+.. ....+++ +++|++.++.
T Consensus 188 ------------------------------------------------~~~~~~~~~~~~--~p~g~~~-d~~G~lwva~ 216 (297)
T 3g4e_A 188 ------------------------------------------------RRSVYKLEKEEQ--IPDGMCI-DAEGKLWVAC 216 (297)
T ss_dssp ------------------------------------------------EEEEEECCGGGC--EEEEEEE-BTTSCEEEEE
T ss_pred ------------------------------------------------cEEEEECCCCCC--CCCeeEE-CCCCCEEEEE
Confidence 000011111111 2567887 9999888887
Q ss_pred ccCCeEEEeeccCcceeEEeecCcceeeEEeec-CCCCeEEEeec
Q 009266 362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSGI 405 (538)
Q Consensus 362 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~ 405 (538)
...+.|.+|+..+++.+..+..+...+++++|. |+++.|+.++.
T Consensus 217 ~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 217 YNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred cCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 778899999999999999998887789999998 88886655543
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=7.5e-12 Score=118.70 Aligned_cols=271 Identities=10% Similarity=0.017 Sum_probs=162.3
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC--cEEEeecccCc
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERG 139 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg--~v~vwd~~~~~ 139 (538)
.....|+|+|+|+++++...++.|++|++.++...... ... .... ++|+| ++++|+++..++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEec--CCCcEEEEecCCCceEEEEEcCCCc
Confidence 46889999999998888888899999999877764433 332 2333 99999 999998888765 78888876654
Q ss_pred eeeee-ec-cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 140 GVETK-LL-GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 140 ~~~~~-~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
..... .+ ......+.+++++|++..+ +.+..++.|+.|++.++... .+...... +.....+...++|+|+++.
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~l-yv~d~~~~I~~~d~~~~~~~-~~~~~~~~---g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWL-YFVDSNKNFGRFNVKTQEVT-LIKQLELS---GSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEE-EEECTTCEEEEEETTTCCEE-EEEECCCC---SCCCCSSCCEEEEETTTTE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeE-EEEECCCcEEEEECCCCCEE-EEeccccc---CCCCCCccccEEEeCCCCE
Confidence 42221 11 2245667899999954344 44677889999999877633 22111110 0001111238999996577
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCC-CcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C-CeEEEeeccCCCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQP-ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-EFIYLFTQDMGLG 294 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~-~~i~~~d~~~~~~ 294 (538)
++++-...+.|+.|+...... .. .+.. ...+.........-.....++++|+|+++++-. . ++|++|++.++..
T Consensus 281 lyv~d~~~~~I~~~~~~g~~~-~~--~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGECE-WF--CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEEEETTTTEEEEECTTCCEE-EE--EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEecCCCEE-EE--EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 888888889999998764211 00 0000 000000000001123578999999999777765 4 4899999655321
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeec
Q 009266 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (538)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~ 372 (538)
. .+...+ . .......... ...- .....+++ +++|.++++-..+++|+.+.+
T Consensus 358 ~-~~~g~~------------~--------~~g~~~g~~~---~~~~--~~P~giav-d~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 S-TVAGQV------------D--------VASQIDGTPL---EATF--NYPYDICY-DGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp E-EEEECT------------T--------CBSCCCBSTT---TCCB--SSEEEEEE-CSSSEEEEEESTTCEEEEEEE
T ss_pred E-EEeCCC------------C--------CCCcCCCChh---ceEe--CCceEEEE-cCCCCEEEEECCCCeEEEEEe
Confidence 0 000000 0 0000000000 0000 12678888 999988888888889988765
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=5.2e-12 Score=116.03 Aligned_cols=236 Identities=8% Similarity=0.050 Sum_probs=153.0
Q ss_pred CCCceEEe-------eccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC-CCEEEEe
Q 009266 8 NNNKRART-------SVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISG 79 (538)
Q Consensus 8 ~~~~~l~t-------~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~t~ 79 (538)
+++.++++ +..++.|.+|+..+++... +.. ....++...+.+++++++ |+++++.
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~----------------~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~ 89 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV----------------ICK-PEVNGYGGIPAGCQCDRDANQLFVAD 89 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEE----------------EEC-CEETTEECCEEEEEECSSSSEEEEEE
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE----------------EEe-cccCCCCCCCceEEEecCCCcEEEEE
Confidence 67777777 5778899999988777531 000 011235577999999999 7766655
Q ss_pred cCCCeEEEEECCCCceeee-ecc---CCCCCeEEEEEeecCCCceEEEEeCC---------------CcEEEeecccCce
Q 009266 80 SDDRRVILWDWKTERVKLS-FHS---GHNDNVFQAKIMPFTDDRSIVTCAAD---------------GQVRHAQILERGG 140 (538)
Q Consensus 80 ~~d~~i~iw~~~~~~~~~~-~~~---~~~~~v~~l~~~~~~~~~~l~s~~~d---------------g~v~vwd~~~~~~ 140 (538)
.. +.|.+|+.. ++.... ... .+...+.++++.| +|.++++...+ +.|..|+.. ++.
T Consensus 90 ~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 90 MR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp TT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred CC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 43 479999988 665332 211 1224588999999 88877776654 456666654 332
Q ss_pred eeeeeccccCCCcEEEEEc----CCCCcEEEEEcCCCcEEEEecC-CCCeee--eeeecccCCCCCccee-eeeEEEEEc
Q 009266 141 VETKLLGKHQGRAHKLAIE----PGSPHVFYTCGEDGLVQHFDLR-TGAATE--LFTCRPIDDRRNYMTV-VNLNAIAID 212 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~dg~i~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~-~~v~~~~~~ 212 (538)
.. +..+......++|+ |++..++++...++.|.+|++. +++... .+.... . .. ..+..++++
T Consensus 165 ~~---~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-----~--~~~~~p~~i~~d 234 (314)
T 1pjx_A 165 IQ---VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-----G--THEGGADGMDFD 234 (314)
T ss_dssp EE---EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-----C--CSSCEEEEEEEB
T ss_pred EE---eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-----C--CCCCCCCceEEC
Confidence 22 22233456889999 9884455565678899999986 343211 111110 0 11 246789999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeecc
Q 009266 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQD 290 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~ 290 (538)
++ ++++++...++.|.+|+..+++.... ...+...+.+++|+|+|+.|.+++ .+.|..|++.
T Consensus 235 ~~-G~l~v~~~~~~~i~~~d~~~g~~~~~---------------~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 235 ED-NNLLVANWGSSHIEVFGPDGGQPKMR---------------IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TT-CCEEEEEETTTEEEEECTTCBSCSEE---------------EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CC-CCEEEEEcCCCEEEEEcCCCCcEeEE---------------EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 97 67888777889999999875542211 111235789999999999555554 3489999986
Q ss_pred C
Q 009266 291 M 291 (538)
Q Consensus 291 ~ 291 (538)
.
T Consensus 299 ~ 299 (314)
T 1pjx_A 299 R 299 (314)
T ss_dssp S
T ss_pred C
Confidence 5
No 211
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.53 E-value=1.7e-12 Score=119.74 Aligned_cols=293 Identities=11% Similarity=-0.035 Sum_probs=179.3
Q ss_pred CCceEEeec-cCC----ceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEec---
Q 009266 9 NNKRARTSV-DKA----LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS--- 80 (538)
Q Consensus 9 ~~~~l~t~~-~d~----~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~--- 80 (538)
...+++... .++ +|.+.|..+++.+. ++..-..+ .++|+|+|++|+.+.
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~---------------------~i~vG~~P--~i~~spDg~~lyVan~~~ 86 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLG---------------------HSLGAFLS--LAVAGHSGSDFALASTSF 86 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEE---------------------EEEECTTC--EEEECTTSSCEEEEEEEE
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEE---------------------EEeCCCCC--ceEECCCCCEEEEEcccc
Confidence 434444443 344 78899999888862 33322344 799999999888875
Q ss_pred -------CCCeEEEEECCCCceeeeeccC--C----CCCeEEEEEeecCCCceEEEEeC--CCcEEE--eecccCceeee
Q 009266 81 -------DDRRVILWDWKTERVKLSFHSG--H----NDNVFQAKIMPFTDDRSIVTCAA--DGQVRH--AQILERGGVET 143 (538)
Q Consensus 81 -------~d~~i~iw~~~~~~~~~~~~~~--~----~~~v~~l~~~~~~~~~~l~s~~~--dg~v~v--wd~~~~~~~~~ 143 (538)
.++.|.+||+.+++.+.++..+ . ......++++| +|++|+++.. ...|.+ +|+.+ +..
T Consensus 87 ~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp--DGk~lyVan~~~~~~v~V~~iD~~t---v~~ 161 (368)
T 1mda_H 87 ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPGASD---DQL 161 (368)
T ss_dssp TTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred cccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence 3678999999999998887432 0 13466889999 9999999875 467888 99877 222
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC-----CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-----GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
..+.+ ++.+.|++...+++.+.++.+.+.++.+ ++...... ... .....+. + .++++.+
T Consensus 162 i~v~~------~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i-----~vg~~P~---~-~~~~~~~ 225 (368)
T 1mda_H 162 TKSAS------CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQ-----NCSSQAA---Q-ANYPGML 225 (368)
T ss_dssp EECSS------CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTS-----CBCSCCE---E-ETTTTEE
T ss_pred EECCC------ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-eee-----eCCCCcc---c-cccCCEE
Confidence 11211 1234566656777788889998888876 33221110 000 0011122 3 5553444
Q ss_pred EEEEeCCCeEEEEEcCCcc--ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE-c-C--------CeEEE
Q 009266 219 FAVAGSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N-D--------EFIYL 286 (538)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~-~--------~~i~~ 286 (538)
++ .+. +.|.+.|+.... ......+.... . ............++|+|+++.|.++ . . +.+.+
T Consensus 226 ~~-vs~-~~V~viD~~~~~~~v~~~~~~~~~~--~---~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 226 VW-AVA-SSILQGDIPAAGATMKAAIDGNESG--R---KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp EE-CBS-SCCEEEECCSSCCEEECCCCSSCTH--H---HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred EE-EcC-CEEEEEECCCCcceEEEEEEecccc--c---cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 44 444 999999986532 11111110000 0 0000001112226899998877654 2 2 36779
Q ss_pred eeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcE-EEEec-cC
Q 009266 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY-VVSGS-DC 364 (538)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~-l~~gs-~d 364 (538)
+|+.+. +.+..+.... ....++| +|+|++ +++.. .+
T Consensus 299 iD~~t~--------------------------------------~vv~~i~vg~---~p~gi~~-s~Dg~~l~va~~~~~ 336 (368)
T 1mda_H 299 VTASVG--------------------------------------QTSGPISNGH---DSDAIIA-AQDGASDNYANSAGT 336 (368)
T ss_dssp EESSSC--------------------------------------CEEECCEEEE---EECEEEE-CCSSSCEEEEEETTT
T ss_pred EECCCC--------------------------------------eEEEEEECCC---CcceEEE-CCCCCEEEEEccCCC
Confidence 998874 2333333322 2678888 999984 55555 58
Q ss_pred CeEEEeeccCcceeEEeecCcceeeEEeecC
Q 009266 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (538)
+.|.++|+.+++.++++.... ....+++.+
T Consensus 337 ~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 337 EVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp TEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred CeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 999999999999999987554 455666654
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.51 E-value=2.3e-13 Score=125.64 Aligned_cols=183 Identities=12% Similarity=0.199 Sum_probs=132.8
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---------eeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTER---------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~---------~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
+++.|++++...+|++|+.+ .+++|++...+ ........+.. |++|+| ++.+|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence 69999999999999999987 57779875443 11111234566 999999 46788888 78999999
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
++.+...... ...|...+.++.+.+. + ++++..+|.|.+|++.++..... ...|+|++|+|
T Consensus 112 dv~sl~~~~~--~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~~--------------~~~Vs~v~WSp 172 (388)
T 1xip_A 112 DLEELSEFRT--VTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQL--------------AQNVTSFDVTN 172 (388)
T ss_dssp ESSSTTCEEE--EEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEEE--------------EESEEEEEECS
T ss_pred EchhhhccCc--cceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccccc--------------cCCceEEEEcC
Confidence 9987664333 5566777888877754 2 78889999999999998876431 12699999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccC--CCccceEEEEEcCCCCEEEEEc
Q 009266 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN 280 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~ 280 (538)
. | ++.|..+|++++|+...........+ .++..... .|...|.++.|.+++++|++..
T Consensus 173 k-G--~~vg~~dg~i~~~~~~~~~~~~k~~I------~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 S-Q--LAVLLKDRSFQSFAWRNGEMEKQFEF------SLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp S-E--EEEEETTSCEEEEEEETTEEEEEEEE------CCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred C-c--eEEEEcCCcEEEEcCCCcccccccee------cCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 7 4 67899999999998876542100000 01111111 3568899999999999998754
No 213
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.51 E-value=4.6e-12 Score=128.27 Aligned_cols=367 Identities=12% Similarity=0.050 Sum_probs=190.2
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc-CcE-EEEEEcCCCCEEEEecCCCeEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
+.+|++++.++.|..+|..+|+.+-+....... ....... ..+ ..+++ .+..|+.++.++.|..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~------------~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDR------------HRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCG------------GGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCc------------cccccccccCCCCccEE--ECCEEEEEccCCEEEE
Confidence 456777788888999999999876321000000 0000000 000 11222 3567888889999999
Q ss_pred EECCCCceeeeeccC-CCCCeEEEEEeecC-CCceEEEEe------CCCcEEEeecccCceeeeeeccc-----------
Q 009266 88 WDWKTERVKLSFHSG-HNDNVFQAKIMPFT-DDRSIVTCA------ADGQVRHAQILERGGVETKLLGK----------- 148 (538)
Q Consensus 88 w~~~~~~~~~~~~~~-~~~~v~~l~~~~~~-~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~----------- 148 (538)
+|..+|+.+.++... +......+..+|.. ++ .+++++ .+|.|+.||..+++.+.......
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~ 214 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKG 214 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHH
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccc
Confidence 999999998776432 22111111112211 44 444443 36899999999998765532211
Q ss_pred ------------------cCCCcEEEEEcCCCCcEEEEEcCCCc-------------------EEEEecCCCCeeeeeee
Q 009266 149 ------------------HQGRAHKLAIEPGSPHVFYTCGEDGL-------------------VQHFDLRTGAATELFTC 191 (538)
Q Consensus 149 ------------------~~~~v~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~ 191 (538)
+......+++.|.. .+++.+..++. |..||+.+++.+..++.
T Consensus 215 ~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~ 293 (689)
T 1yiq_A 215 MEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT 293 (689)
T ss_dssp HHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred ccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec
Confidence 01111257888877 57888877753 99999999999888765
Q ss_pred cccCCCCCcceeeeeEEEEEcCCCCc---EEEEEeCCCeEEEEEcCCccccCCCCCCCC-------------Cc------
Q 009266 192 RPIDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWDGSTDFGQP-------------AD------ 249 (538)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------~~------ 249 (538)
...... .+....++.......+ +. .++.++.+|.|+++|..+++++....+... +.
T Consensus 294 ~~~d~w-d~~~~~~~~l~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 294 TPGDAW-DYTATQHMILAELPID-GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp STTCCS-CCCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred CCcccc-cccCCCCcEEEeeccC-CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 321110 0001111111122223 33 788999999999999999987533222110 00
Q ss_pred --------ccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCCCCCCCCcccccc-ccccCCCC---
Q 009266 250 --------YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSE-ASEMGSDH--- 316 (538)
Q Consensus 250 --------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 316 (538)
..++. ....+ .-..++|+|+..+|++.... ...++....... +...+...... .....+..
T Consensus 372 ~~~~~~~~~~~p~-~~Gg~--~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~p~~~~~ 445 (689)
T 1yiq_A 372 YWKNGKRNLVTPA-FWGAH--DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPK---RNPFKSMYQLGLRTGMMPEGAEG 445 (689)
T ss_dssp TTTSSSCEEESSC-TTCSS--CSSCCEEETTTTEEEEEEEECCEEEECCSSCCC---CCSCTTSCCCSSEECCCCSSHHH
T ss_pred ccCCCCeeEeCCC-ccccc--CCCcceECCCCCEEEEeccccceeeeecccccc---ccccccccccCccccccCccccc
Confidence 00000 00110 12347899988887776643 333443322100 00000000000 00000000
Q ss_pred ------ccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCccee-e
Q 009266 317 ------TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV-N 389 (538)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v-~ 389 (538)
.........+....+.+-.+..+.. +....+ ...+.+|++|+.||.|++||..+|+.+.+++...+.+ .
T Consensus 446 ~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~-~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 521 (689)
T 1yiq_A 446 LLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTL-STAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAA 521 (689)
T ss_dssp HHHHHTTCEEEEEEEETTTTEEEEEEEESSS---CCCCEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred CCCCCCCcceeEEEEECCCCCeEeEccCCCC---ccCccc-eECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccC
Confidence 0000000011111222222222221 222233 4567789999999999999999999998887654322 4
Q ss_pred EEeecCCCC-eEEEee
Q 009266 390 CIEPHPHST-VLASSG 404 (538)
Q Consensus 390 ~~~~s~~~~-~l~s~~ 404 (538)
-+.|..+|+ |+++.+
T Consensus 522 p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 522 PVTYSVDGEQYVTFMA 537 (689)
T ss_dssp CEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEEEe
Confidence 566778888 444443
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.49 E-value=1.3e-11 Score=116.94 Aligned_cols=257 Identities=11% Similarity=0.047 Sum_probs=157.2
Q ss_pred CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC--cEEEEecCC
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRT 182 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~ 182 (538)
.....|+|+| ++.++++...++.|++|++.++..... ... ..... ++|+|++ ..|+++..++ .|.+|+...
T Consensus 131 ~~P~~la~d~--~g~lyv~d~~~~~I~~id~~~g~~~~~--~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVG--NNTVLAYQRDDPRVRLISVDDNKVTTV--HPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECS--TTEEEEEETTTTEEEEEETTTTEEEEE--EET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeC--CCCEEEEecCCCcEEEEECCCCEEEEe--ecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCC
Confidence 4678999999 998777777789999999987655433 222 22334 9999999 5667776655 799998876
Q ss_pred CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCcc
Q 009266 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (538)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (538)
+.....+...... ....+.+++++|+++.+++ +..++.|+.|+..++........ ........
T Consensus 204 ~~~~~~~g~~~~~------~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~----------~~~g~~~~ 266 (409)
T 3hrp_A 204 GWAPTRIGQLGST------FSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQL----------ELSGSLGT 266 (409)
T ss_dssp TTCEEEEEECCTT------SCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEEC----------CCCSCCCC
T ss_pred CceeEEeeeccch------hcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecc----------cccCCCCC
Confidence 6543333110000 1124678999996455555 67788999999876542100000 00000011
Q ss_pred c-eEEEEEcCC-CCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeecc
Q 009266 263 G-ITGLAFSDQ-SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (538)
Q Consensus 263 ~-i~~~~~s~~-~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
. ...++|+|+ +.++++-. .+.|+.|+..... ..+. ... ... .. ..-....
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~--~~~~----------g~~----------~~~----g~-~dg~~~~ 319 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC--EWFC----------GSA----------TQK----TV-QDGLREE 319 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE--EEEE----------ECT----------TCC----SC-BCEEGGG
T ss_pred CccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE--EEEE----------eCC----------CCC----Cc-CCCcccc
Confidence 1 138999995 55555554 4589999865420 0000 000 000 00 0000000
Q ss_pred ccceeeeEEEEecCCCcEEEEec-cCCeEEEeeccCcceeEEeecC---------------cceeeEEeecCCCCeEEEe
Q 009266 340 RNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEAD---------------RHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 340 ~~~~~i~~v~~~s~~~~~l~~gs-~dg~i~iwd~~~~~~~~~~~~h---------------~~~v~~~~~s~~~~~l~s~ 403 (538)
..-.....+++ +|+|+++++-+ ..++|+.|++.+++. .++.++ -..+..|+++|++.++++-
T Consensus 320 ~~~~~P~gia~-d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 320 ALFAQPNGMTV-DEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp CBCSSEEEEEE-CTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred cEeCCCeEEEE-eCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 00012568888 99999888888 889999999877764 444443 2358899999998888888
Q ss_pred ecCCceEEecC
Q 009266 404 GIESDIKILTP 414 (538)
Q Consensus 404 ~~dg~v~vw~~ 414 (538)
...+.|+.+.+
T Consensus 398 ~~n~~Ir~i~~ 408 (409)
T 3hrp_A 398 AWGKAIRKYAV 408 (409)
T ss_dssp STTCEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 88888887764
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=1.1e-11 Score=112.62 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=145.9
Q ss_pred CCCCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
|.+..+.++++....+.|+.|+..+++.. .+ .+...+.+++++|+|+++++. .+.
T Consensus 20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------------------~~-~~~~~~~~i~~~~dG~l~v~~--~~~ 74 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----------------------RV-TMDAPVSSVALRQSGGYVATI--GTK 74 (297)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEE----------------------EE-ECSSCEEEEEEBTTSSEEEEE--TTE
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEE----------------------EE-eCCCceEEEEECCCCCEEEEE--CCe
Confidence 34446677888888899999999876542 11 134679999999999966654 467
Q ss_pred EEEEECCCCceeeeecc--C-CCCCeEEEEEeecCCCceEEEEeCC---------CcEEEeecccCceeeeeeccccCCC
Q 009266 85 VILWDWKTERVKLSFHS--G-HNDNVFQAKIMPFTDDRSIVTCAAD---------GQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~--~-~~~~v~~l~~~~~~~~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
|.+|+..+++....... . ....++.+++.| +|+++++.... ....||.+........ +..+...
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~~ 150 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVDI 150 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEESB
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--Eeecccc
Confidence 99999988765322211 1 223578899999 99877655322 3345666543322221 2233445
Q ss_pred cEEEEEcCCCCcEEEEEcCCCcEEEEec--CCCCeee--eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeE
Q 009266 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDL--RTGAATE--LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 228 (538)
.+.++|+|++..++++.+..+.|.+|++ .++.... .+..... .......+++.++ +++.++....+.|
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-------~~~~p~g~~~d~~-G~lwva~~~~~~v 222 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-------EEQIPDGMCIDAE-GKLWVACYNGGRV 222 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-------GGCEEEEEEEBTT-SCEEEEEETTTEE
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-------CCCCCCeeEECCC-CCEEEEEcCCCEE
Confidence 6889999999656677777889999987 4554321 1111100 1225678999998 6787877778899
Q ss_pred EEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEc-CCCCEEEEEc
Q 009266 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN 280 (538)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~ 280 (538)
.+|+..++++...+ ..+...+++++|. |+++.|.+++
T Consensus 223 ~~~d~~tG~~~~~i---------------~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 223 IRLDPVTGKRLQTV---------------KLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEECTTTCCEEEEE---------------ECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEEcCCCceEEEEE---------------ECCCCCceEEEEeCCCCCEEEEEc
Confidence 99999877643221 1123568999998 7877655443
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.49 E-value=6.6e-12 Score=128.16 Aligned_cols=249 Identities=12% Similarity=0.068 Sum_probs=150.6
Q ss_pred cCCcCcEEEEEEcCCCCEEEE-----ecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC----
Q 009266 58 DKHRGCVNTVSFNTDGDILIS-----GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---- 128 (538)
Q Consensus 58 ~~h~~~v~~~~~s~~g~~l~t-----~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg---- 128 (538)
.+|...|..++|||+|++||. |+....|++|++.+++.+...... .....++|+ +++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws---Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL---GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE---TTTEEEEEESSCCC--
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe---CCCEEEEEEecCcccc
Confidence 456678999999999999984 333468999999999865432111 123567888 678888777664
Q ss_pred ---------cEEEeecccCcee--eeeeccc-cCCCcEEEEEcCCCCcEEEEEcC---CCcEEEEecCCCC-eeeeeeec
Q 009266 129 ---------QVRHAQILERGGV--ETKLLGK-HQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGA-ATELFTCR 192 (538)
Q Consensus 129 ---------~v~vwd~~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~~~~~~~ 192 (538)
.|++|++.+.... ....... |...+..+.|+|++..++++... ...|+++++.++. ....+..+
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 3999998776542 2212233 44567889999999655555443 3579999987764 22233221
Q ss_pred ccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC---CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEE
Q 009266 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (538)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (538)
. ...... ++++++.+++++..+ +.|.++++.++.
T Consensus 280 ~----------~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-------------------------------- 316 (693)
T 3iuj_A 280 L----------DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-------------------------------- 316 (693)
T ss_dssp S----------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC--------------------------------
T ss_pred C----------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC--------------------------------
Confidence 1 112222 445444454444332 344444443321
Q ss_pred cCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEE
Q 009266 270 SDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349 (538)
Q Consensus 270 s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 349 (538)
....+.+..+... +. .
T Consensus 317 ------------------------------------------------------------~~~~~~l~~~~~~--~~--~ 332 (693)
T 3iuj_A 317 ------------------------------------------------------------PAHWRDLIPERQQ--VL--T 332 (693)
T ss_dssp ------------------------------------------------------------GGGCEEEECCCSS--CE--E
T ss_pred ------------------------------------------------------------ccccEEEecCCCC--EE--E
Confidence 0011223333332 22 4
Q ss_pred EecCCCcEEEEeccCC---eEEEeeccCcceeEEee-cCcceeeEEeecCCCCeEEEeecC----CceEEecCCCCccc
Q 009266 350 FFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIE----SDIKILTPNAADRA 420 (538)
Q Consensus 350 ~~s~~~~~l~~gs~dg---~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d----g~v~vw~~~~~~~~ 420 (538)
| ++++++|+....++ .|++|++..+ ....+. .+.+.+..+.++|+++.|+....+ +.|+.|++.+++..
T Consensus 333 ~-s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 333 V-HSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp E-EEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred E-EEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 5 77788777655443 6889988744 444443 244578888899998877665544 78999999876543
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.48 E-value=3e-10 Score=104.57 Aligned_cols=230 Identities=12% Similarity=0.086 Sum_probs=138.9
Q ss_pred CcEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce
Q 009266 62 GCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (538)
Q Consensus 62 ~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 140 (538)
....+.+|+|+ +.++++....+.|.+|+..+++.. .+ .....+.+++|+| ++.++++. . ..|.+|+..+++.
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~v~~i~~~~--dg~l~v~~-~-~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKIS--DSKQLIAS-D-DGLFLRDTATGVL 121 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEE--TTEEEEEE-T-TEEEEEETTTCCE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE--ECCCcceEEEEeC--CCeEEEEE-C-CCEEEEECCCCcE
Confidence 34578899997 456667777889999999877643 23 1345799999999 98877765 3 4599999877764
Q ss_pred eeeeeccc--cCCCcEEEEEcCCCCcEEEEEcC------CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 141 VETKLLGK--HQGRAHKLAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 141 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
........ ....+..++++|++ +++++... .+.|..++ +++...... .......++|+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-----------~~~~~~~i~~s 187 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-----------DISIPNSICFS 187 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-----------EESSEEEEEEC
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-----------CCcccCCeEEc
Confidence 33211111 12358899999999 45554432 13344444 333221111 11124567777
Q ss_pred CCCCcEEEEEeCCCeEEEEEcC--Cc-cccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeec
Q 009266 213 PRNANLFAVAGSDEYTRLYDIR--KY-KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~ 289 (538)
|++..++++.+..+.|.+|++. ++ ++. . .+.+
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------------------~-----------~~~~------------- 222 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------------------K-----------AEVF------------- 222 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------------------C-----------CEEE-------------
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCccc---------------------C-----------ceEE-------------
Confidence 7632233444445666666654 22 100 0 0000
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEE
Q 009266 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (538)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~i 369 (538)
..+..... ....+++ +++|++.++....+.|.+
T Consensus 223 --------------------------------------------~~~~~~~~--~p~gi~~-d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 223 --------------------------------------------IDSTGIKG--GMDGSVC-DAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp --------------------------------------------EECTTSSS--EEEEEEE-CTTSCEEEEEETTTEEEE
T ss_pred --------------------------------------------EECCCCCC--CCCeeEE-CCCCCEEEEEeCCCEEEE
Confidence 00000011 1456777 899987777766788999
Q ss_pred eeccCcceeEEeecCcceeeEEeec-CCCCeEEEeec
Q 009266 370 WKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSGI 405 (538)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~ 405 (538)
|+. +++.+..+..+...+++++|+ |+++.|+.++.
T Consensus 256 ~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 998 678888887777789999998 88876655443
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.47 E-value=4.4e-12 Score=116.93 Aligned_cols=276 Identities=7% Similarity=-0.118 Sum_probs=172.4
Q ss_pred EEEEecCCC----eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe----------CCCcEEEeecccCce
Q 009266 75 ILISGSDDR----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQILERGG 140 (538)
Q Consensus 75 ~l~t~~~d~----~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~----------~dg~v~vwd~~~~~~ 140 (538)
.+++-..++ +|.++|..+++.+.++..+.. + .++++| ++++++++. .++.|.+||+.+.+.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 344444444 888999999999998865543 4 799999 999999886 368899999999988
Q ss_pred eeeeecccc-----CCCcEEEEEcCCCCcEEEEEcC--CCcEEE--EecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 141 VETKLLGKH-----QGRAHKLAIEPGSPHVFYTCGE--DGLVQH--FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 141 ~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
+....+.+. ......++|+|+++ +|+++.. ...|.+ +|+.+ +..+.... ++.+
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--------------~~~~ 170 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--------------CFHI 170 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEECSS--------------CCCC
T ss_pred EEEEECCCccccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEECCC--------------ceEE
Confidence 776444311 13466899999995 4555543 467888 99887 33333110 1223
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCC-----ccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEE
Q 009266 212 DPRNANLFAVAGSDEYTRLYDIRK-----YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~ 286 (538)
.|++...+++.+.+|.+.+.++.+ ++...... ....-...+. ++...+.++++.. +.+.+
T Consensus 171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-----------~~i~vg~~P~---~~~~~~~~~~vs~-~~V~v 235 (368)
T 1mda_H 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-----------GAQNCSSQAA---QANYPGMLVWAVA-SSILQ 235 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-----------TTSCBCSCCE---EETTTTEEEECBS-SCCEE
T ss_pred ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-----------eeeeCCCCcc---ccccCCEEEEEcC-CEEEE
Confidence 344456677777888888888876 43221100 0010012232 3333445555555 88889
Q ss_pred eeccCCCCC--CCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEecc-
Q 009266 287 FTQDMGLGP--NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD- 363 (538)
Q Consensus 287 ~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~- 363 (538)
.|+...... ..+.... .......+... ....+++ +|++++|+++..
T Consensus 236 iD~~~~~~~v~~~~~~~~--------------------------~~~~~~~~~p~----g~~~v~~-s~dg~~lyV~~~~ 284 (368)
T 1mda_H 236 GDIPAAGATMKAAIDGNE--------------------------SGRKADNFRSA----GFQMVAK-LKNTDGIMILTVE 284 (368)
T ss_dssp EECCSSCCEEECCCCSSC--------------------------THHHHTTEEEC----SSSCEEE-ETTTTEEEEEEEE
T ss_pred EECCCCcceEEEEEEecc--------------------------ccccccccccC----cceeeEE-cCCCCEEEEEecc
Confidence 887542110 0000000 00000000000 0122566 999988876543
Q ss_pred --------CCeEEEeeccCcceeEEeecCcceeeEEeecCCCC-eEEEee-cCCceEEecCCCCccc
Q 009266 364 --------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRA 420 (538)
Q Consensus 364 --------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~v~vw~~~~~~~~ 420 (538)
.+.+.++|+.+++.+.++.... ....|+|+|+++ ++++.. .++.|.|+|+.+.+..
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred ccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 2356699999999999887544 689999999998 556666 5999999999988764
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.46 E-value=2.1e-10 Score=108.24 Aligned_cols=317 Identities=10% Similarity=0.034 Sum_probs=181.5
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcC-CcCcEEE-EEEcCCCCEEEEecCCCeEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNT-VSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~-~~~s~~g~~l~t~~~d~~i~i 87 (538)
+.+|++++.++.|..+|..+|+.+-+.. +........ ....+.+ +.. .+..|+.++.++.|..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVS-------------LAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYA 117 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE-------------CCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeec-------------CccccccccccCcccccCceE--eCCEEEEEcCCCEEEE
Confidence 5668888888999999999898752200 000000000 0122322 222 3557777888899999
Q ss_pred EECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC---CcEEEEEcCCCCc
Q 009266 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPH 164 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~ 164 (538)
+|..+|+.+.+.. ........... .+..++.++.++.|..++..+++.+.......... ........ + .
T Consensus 118 ~d~~tG~~~W~~~-~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~--~ 189 (376)
T 3q7m_A 118 LNTSDGTVAWQTK-VAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F--G 189 (376)
T ss_dssp EETTTCCEEEEEE-CSSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T--T
T ss_pred EECCCCCEEEEEe-CCCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C--C
Confidence 9999999877662 22221222222 34578888889999999999888766533322110 00112222 2 3
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee-EEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCC
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 243 (538)
.++.++.++.|..+|..+++.+...................+ ....+. +..+++++.++.|..++..+++......
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~v~~~~~~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE---TTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE---CCEEEEEecCcEEEEEECCCCcEEeecc
Confidence 577888899999999999998876653321000000000000 011111 2467777889999999998876432211
Q ss_pred CCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 009266 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (538)
......+... ++.+++...++.|+.++..+++...
T Consensus 267 -----------------~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w--------------------------- 301 (376)
T 3q7m_A 267 -----------------LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLW--------------------------- 301 (376)
T ss_dssp -----------------CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEE---------------------------
T ss_pred -----------------CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEE---------------------------
Confidence 1123334333 4445555557799999988753211
Q ss_pred CCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEe
Q 009266 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
........ .+..... .+..|++++.+|.|++++..+++.+..+......+.+.... .+..|+.+
T Consensus 302 -----------~~~~~~~~-~~~~~~~---~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~ 365 (376)
T 3q7m_A 302 -----------TQSDLLHR-LLTSPVL---YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQ 365 (376)
T ss_dssp -----------EECTTTTS-CCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEE
T ss_pred -----------eecccCCC-cccCCEE---ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEE
Confidence 11100000 0112222 24578888889999999999999988776543333322111 24567788
Q ss_pred ecCCceEEec
Q 009266 404 GIESDIKILT 413 (538)
Q Consensus 404 ~~dg~v~vw~ 413 (538)
+.+|.|+.|+
T Consensus 366 ~~~G~l~~~~ 375 (376)
T 3q7m_A 366 AKDGTVYSIT 375 (376)
T ss_dssp BTTSCEEEEE
T ss_pred eCCCEEEEEe
Confidence 8899999886
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.46 E-value=2e-11 Score=123.34 Aligned_cols=359 Identities=12% Similarity=0.024 Sum_probs=186.7
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCC----c-CcEEEEEEcCCCCEEEEecCCCe
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH----R-GCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~-~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
+.+|++++.++.|.-+|..+|+.+-+... ....... . .....+++ .+..|+.++.++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~---------------~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~ 139 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDP---------------QIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGR 139 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECC---------------CCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC---------------CCCccccccccccCCCCCceE--ECCEEEEEcCCCE
Confidence 44577777788888899888887632110 0000000 0 00012233 3567888888999
Q ss_pred EEEEECCCCceeeeeccCCC----CCeEEEEEeecCCCceEEEEeC------CCcEEEeecccCceeeeeeccccC----
Q 009266 85 VILWDWKTERVKLSFHSGHN----DNVFQAKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKHQ---- 150 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~----~~v~~l~~~~~~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~~~~~---- 150 (538)
|..+|..+|+.+.++..... ..+.+.-.. .+..+++++. ++.|+.+|..+++.+.........
T Consensus 140 l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~ 216 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKP 216 (677)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred EEEEECCCCCEEeeecCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccc
Confidence 99999999999887733201 122211111 2345555543 689999999999877653332111
Q ss_pred --------------------------CCcEEEEEcCCCCcEEEEEcCCC-------------------cEEEEecCCCCe
Q 009266 151 --------------------------GRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAA 185 (538)
Q Consensus 151 --------------------------~~v~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~ 185 (538)
.....+++.|.+ .+++.+..++ .|..+|..+++.
T Consensus 217 ~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~ 295 (677)
T 1kb0_A 217 FEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY 295 (677)
T ss_dssp CSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred ccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE
Confidence 112357888887 5677776553 599999999999
Q ss_pred eeeeeecccCCCCCcceeeeeEEEEEcCCCC---cEEEEEeCCCeEEEEEcCCccccCCCCCCCCC------------c-
Q 009266 186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA------------D- 249 (538)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~- 249 (538)
+..++........ +........+....+ + ..+++++.+|.|+++|..+++++....+.... .
T Consensus 296 ~W~~~~~~~d~wd-~~~~~~p~l~~~~~d-G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~ 373 (677)
T 1kb0_A 296 KWHYQETPGDNWD-YTSTQPMILADIKIA-GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGI 373 (677)
T ss_dssp EEEEESSTTCCSC-CCCCSCCEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEEC
T ss_pred EEEEecCCCcccc-cccCCCcEEEecccC-CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeec
Confidence 8887653221100 000111222233334 4 68899999999999999999876543332100 0
Q ss_pred ----------ccCCCCccCCCccceEEEEEcCCCCEEEEEcCC-eEEEeeccCCCCCC-CCCCCCccccccc---cccC-
Q 009266 250 ----------YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPN-PPPSSPVSTRSEA---SEMG- 313 (538)
Q Consensus 250 ----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~-~~~~~~~~~~~~~---~~~~- 313 (538)
..++. .... ..-..++|+|++.++++.... ...++....-..-. .....+....... ..+.
T Consensus 374 ~~~~~~~~~~~~~P~-~~G~--~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 450 (677)
T 1kb0_A 374 AAARDGSKPQDAVPG-PYGA--HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEP 450 (677)
T ss_dssp GGGGCTTSCEECSSC-TTCS--SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSC
T ss_pred cccCcCCCccEECcC-cccc--cCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccccc
Confidence 00000 0000 011367889988877766532 22333222000000 0000000000000 0000
Q ss_pred -C--CCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcc-eee
Q 009266 314 -S--DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH-VVN 389 (538)
Q Consensus 314 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~-~v~ 389 (538)
+ ....+. ..+....+.+-.+... .. +....+ ...+.++++++.+|.|++||+.+++.+..+....+ ...
T Consensus 451 ~~~~~~g~l~---A~D~~tG~~~W~~~~~-~~--~~~g~~-~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 523 (677)
T 1kb0_A 451 PKSKPFGRLL---AWDPVAQKAAWSVEHV-SP--WNGGTL-TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (677)
T ss_dssp CCSCCEEEEE---EEETTTTEEEEEEEES-SS--CCCCEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred CCCCCccEEE---EEeCCCCcEEeecCCC-CC--CcCcce-EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence 0 000000 0000111112222211 11 233333 55677888899999999999999999998875442 224
Q ss_pred EEeecCCCCeEE
Q 009266 390 CIEPHPHSTVLA 401 (538)
Q Consensus 390 ~~~~s~~~~~l~ 401 (538)
-+.|.++|+.++
T Consensus 524 p~~y~~~G~~~v 535 (677)
T 1kb0_A 524 PSTYMVDGRQYV 535 (677)
T ss_dssp CEEEEETTEEEE
T ss_pred CEEEEeCCEEEE
Confidence 456667887443
No 221
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=8.7e-12 Score=128.57 Aligned_cols=237 Identities=13% Similarity=0.055 Sum_probs=150.1
Q ss_pred CCCCCCceEEeeccC-----CceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEe
Q 009266 5 SNNNNNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (538)
Q Consensus 5 ~~~~~~~~l~t~~~d-----~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~ 79 (538)
.++|++++||.+..+ ..|++|++.+|+.+. ..+ +...+..++|+|+ +.|+.+
T Consensus 169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~--------------------~~~--~~~~~~~~~wspD-~~l~~~ 225 (741)
T 1yr2_A 169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA--------------------DEL--KWVKFSGLAWLGN-DALLYS 225 (741)
T ss_dssp EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE--------------------EEE--EEEESCCCEESTT-SEEEEE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC--------------------ccC--CCceeccEEEECC-CEEEEE
Confidence 367899998887654 469999999888641 011 1222457899999 999888
Q ss_pred cCCCe--------------EEEEECCCCcee--eee-ccCCCCCeEEEEEeecCCCceEEEEeCCC-----cEEEeeccc
Q 009266 80 SDDRR--------------VILWDWKTERVK--LSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADG-----QVRHAQILE 137 (538)
Q Consensus 80 ~~d~~--------------i~iw~~~~~~~~--~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg-----~v~vwd~~~ 137 (538)
+.++. |++|++.++... ..+ ...+...+..+.|+| +|++|+..+.++ .|.+|++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCC
Confidence 76543 899999877632 112 123334588999999 999988877543 899999987
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC----CCcEEEEecCCCC-eeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE----DGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
+.......+..+...+.... .|++. .|+..+. .+.|.+|++.++. ....+... ....+..+++.
T Consensus 304 ~~~~~~~~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~---------~~~~l~~~~~~ 372 (741)
T 1yr2_A 304 GKIGPVTALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE---------SKDNLESVGIA 372 (741)
T ss_dssp TEECCCEEEECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECC---------CSSEEEEEEEE
T ss_pred CCCcccEEecCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecC---------CCCeEEEEEEE
Confidence 62110112444444555553 47784 4444443 3459999998752 22222211 11246677777
Q ss_pred CCCCcEEEEEeCCCeEEEEEcC-CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE-c----CCeEEE
Q 009266 213 PRNANLFAVAGSDEYTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N----DEFIYL 286 (538)
Q Consensus 213 ~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~----~~~i~~ 286 (538)
. +.++++...++..+||.+. .++.. ..+.......+..++++|+++.|+.. + .+.|++
T Consensus 373 ~--~~lv~~~~~dg~~~l~~~~~~g~~~--------------~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 373 G--NRLFASYIHDAKSQVLAFDLDGKPA--------------GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp B--TEEEEEEEETTEEEEEEEETTSCEE--------------EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred C--CEEEEEEEECCEEEEEEEeCCCCce--------------eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 3 6788999999988887664 22211 11111234578899999998755432 2 247999
Q ss_pred eeccCCC
Q 009266 287 FTQDMGL 293 (538)
Q Consensus 287 ~d~~~~~ 293 (538)
|++.++.
T Consensus 437 ~d~~tg~ 443 (741)
T 1yr2_A 437 LDPATAK 443 (741)
T ss_dssp EETTTTE
T ss_pred EECCCCc
Confidence 9987653
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.45 E-value=3.8e-11 Score=109.53 Aligned_cols=235 Identities=10% Similarity=0.015 Sum_probs=150.4
Q ss_pred eEEcCCcCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 55 AKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
..+..+.....+.+|+|+|+ +++++...+.|..|+. +++. ..+ ..+...+..+++.+ +|+++++....+.|.+|
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~-~~~~~~~~gl~~d~--dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVL-LDATAFTNGNAVDA--QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEE-EESCSCEEEEEECT--TSCEEEEETTTTEEEEE
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEE-eCCCCccceeeECC--CCCEEEEECCCCEEEEE
Confidence 34445566788999999998 6677778899999997 4553 333 34556789999999 99876666666889999
Q ss_pred ecccCceeeee-eccc-cCCCcEEEEEcCCCCcEEEE----EcC-------------CCcEEEEecCCCCeeeeeeeccc
Q 009266 134 QILERGGVETK-LLGK-HQGRAHKLAIEPGSPHVFYT----CGE-------------DGLVQHFDLRTGAATELFTCRPI 194 (538)
Q Consensus 134 d~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~ 194 (538)
+.. ++..... ...+ ....+..+++.|+| .++++ |.. .+.|..|+..+++..... ..
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~-- 187 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL-- 187 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE--
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC--
Confidence 975 4332211 1111 12457789999999 56665 332 256788887666654332 11
Q ss_pred CCCCCcceeeeeEEEEEcCCCCcEEEEEeCC------CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEE
Q 009266 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA 268 (538)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 268 (538)
...+.++|+|+ ++.|+++... +.|++|++....+... ..........+..++
T Consensus 188 ---------~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~------------~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 188 ---------DHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGALHDR------------RHFASVPDGLPDGFC 245 (305)
T ss_dssp ---------SSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTEEEEE------------EEEECCSSSCCCSEE
T ss_pred ---------CCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCCccCC------------eEEEECCCCCCCeEE
Confidence 13578999998 5666665554 7899999875421100 000000123345688
Q ss_pred EcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEE
Q 009266 269 FSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV 348 (538)
Q Consensus 269 ~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 348 (538)
+.++|+++++. .+.|.+|+... ..+..+.... .+..+
T Consensus 246 ~d~~G~lwv~~-~~gv~~~~~~g---------------------------------------~~~~~~~~~~---~~~~~ 282 (305)
T 3dr2_A 246 VDRGGWLWSSS-GTGVCVFDSDG---------------------------------------QLLGHIPTPG---TASNC 282 (305)
T ss_dssp ECTTSCEEECC-SSEEEEECTTS---------------------------------------CEEEEEECSS---CCCEE
T ss_pred ECCCCCEEEec-CCcEEEECCCC---------------------------------------CEEEEEECCC---ceeEE
Confidence 99999966555 55799998742 2233333333 27788
Q ss_pred EEecCCCcEEEEeccCC
Q 009266 349 NFFGPKCEYVVSGSDCG 365 (538)
Q Consensus 349 ~~~s~~~~~l~~gs~dg 365 (538)
+| +|+++.|+.++.++
T Consensus 283 ~f-~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 283 TF-DQAQQRLFITGGPC 298 (305)
T ss_dssp EE-CTTSCEEEEEETTE
T ss_pred EE-eCCCCEEEEEcCCe
Confidence 88 89998888877654
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=5.5e-11 Score=108.48 Aligned_cols=235 Identities=11% Similarity=-0.008 Sum_probs=148.8
Q ss_pred CCCCCeEEEEEeecCCCc-eEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEec
Q 009266 102 GHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (538)
Q Consensus 102 ~~~~~v~~l~~~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (538)
.+......++|+| +++ ++++....+.|..|+. ++.. .. +..+...+..+++.+++ +++++....+.|.+|+.
T Consensus 42 ~~~~~~egp~~~~--~g~~l~~~d~~~~~i~~~~~-~g~~-~~--~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWE--AQRTLVWSDLVGRRVLGWRE-DGTV-DV--LLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEG--GGTEEEEEETTTTEEEEEET-TSCE-EE--EEESCSCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeC--CCCEEEEEECCCCEEEEEeC-CCCE-EE--EeCCCCccceeeECCCC-CEEEEECCCCEEEEECC
Confidence 3445677899999 888 5667677899999987 3432 22 33456678999999999 56666666678999997
Q ss_pred CCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE----EeC-------------CCeEEEEEcCCccccCCCC
Q 009266 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV----AGS-------------DEYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~v~iwd~~~~~~~~~~~ 243 (538)
. ++.......... .....++.++++|+ ++++++ |.. .+.|..|+..+++..
T Consensus 115 ~-g~~~~~~~~~~~------~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~---- 182 (305)
T 3dr2_A 115 D-GQAHLLVGRYAG------KRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ---- 182 (305)
T ss_dssp T-SCEEEEECEETT------EECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE----
T ss_pred C-CCEEEEEeccCC------CccCCCCCEEECCC-CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE----
Confidence 6 543322211110 01124678999997 677775 332 245777776555421
Q ss_pred CCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C------CeEEEeeccCCCCCCCCCCCCccccccccccCCCC
Q 009266 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
... .......++|+|+++.|+.+. . +.|++|++.... .
T Consensus 183 -----------~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l--------------------- 227 (305)
T 3dr2_A 183 -----------RMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L--------------------- 227 (305)
T ss_dssp -----------EEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E---------------------
T ss_pred -----------EEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c---------------------
Confidence 111 233567899999999766654 3 579999876421 0
Q ss_pred ccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCC
Q 009266 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 396 (538)
.....+... .......+++ +++|++.++ +.+ .|.+|+. .++.+..+..+. .+.+++|+|+
T Consensus 228 --------------~~~~~~~~~-~~~~pdgi~~-d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d 287 (305)
T 3dr2_A 228 --------------HDRRHFASV-PDGLPDGFCV-DRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQA 287 (305)
T ss_dssp --------------EEEEEEECC-SSSCCCSEEE-CTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTT
T ss_pred --------------cCCeEEEEC-CCCCCCeEEE-CCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCC
Confidence 000011000 0011345777 999995444 444 4999997 678887777655 5899999999
Q ss_pred CCeEEEeecCCceE
Q 009266 397 STVLASSGIESDIK 410 (538)
Q Consensus 397 ~~~l~s~~~dg~v~ 410 (538)
++.|..++.++..+
T Consensus 288 ~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 288 QQRLFITGGPCLWM 301 (305)
T ss_dssp SCEEEEEETTEEEE
T ss_pred CCEEEEEcCCeEEE
Confidence 98887777654433
No 224
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=4.5e-12 Score=117.07 Aligned_cols=182 Identities=14% Similarity=0.085 Sum_probs=126.3
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
++...++++|+.++ ++||++...+... .....+ +.+.... .+.. |+.|+| ++.+|+++ .++.|+
T Consensus 46 s~~~gll~a~~~~~-l~v~~~~~l~~~~------~~~~~~----~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 46 SNSKSLFVAASGSK-AVVGELQLLRDHI------TSDSTP----LTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp ETTTTEEEEEETTE-EEEEEHHHHHHHH------HSSSCC----CCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred cCCCCEEEEeCCCE-EEEEEhhHhhhhh------cccccc----ccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence 46677888888874 6669987443100 000000 2222222 3566 999999 89999999 789999
Q ss_pred EEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEE
Q 009266 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 87 iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
+|++.+....... ..|...+.++.+.+ . .+++++.+|.|.+|++.++.... +...|+|++|+|.| +
T Consensus 110 v~dv~sl~~~~~~-~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG---~ 175 (388)
T 1xip_A 110 SLDLEELSEFRTV-TSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ---L 175 (388)
T ss_dssp EEESSSTTCEEEE-EECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE---E
T ss_pred EEEchhhhccCcc-ceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc---e
Confidence 9999876654443 56777888888776 3 38889999999999998776532 34579999999988 5
Q ss_pred EEEcCCCcEEEEecCCCCe--eeeeeecccCC-CCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 167 YTCGEDGLVQHFDLRTGAA--TELFTCRPIDD-RRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
+.|..+|+|++|+...... ...+...+... ..+ +...|.+|+|.++ ..++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~--~~~~V~sI~wl~~-~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPV--EEYSPLSVTILSP-QDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCT--TTSEEEEEEESSS-SEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccC--CCeeEEEEEEecC-CeEEEE
Confidence 7788999999999887775 44443322110 001 2357999999996 566665
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.41 E-value=8.4e-10 Score=104.04 Aligned_cols=310 Identities=7% Similarity=-0.031 Sum_probs=179.2
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCC--------CCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeee
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGH--------NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~--------~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 144 (538)
+..|++++.++.|..||..+|+.+.++.... ...+.+. ... .+..|++++.++.|..+|..+++.+...
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 5677788888999999999999876663221 1223222 222 5567888888999999999998877654
Q ss_pred eccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC
Q 009266 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 224 (538)
.+.... .....+. + ..+++++.++.|..+|..+++.+..+........ .......... +..+++++.
T Consensus 130 ~~~~~~--~~~p~~~-~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~---~~~v~~g~~ 196 (376)
T 3q7m_A 130 KVAGEA--LSRPVVS-D--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-----LRGESAPTTA---FGAAVVGGD 196 (376)
T ss_dssp ECSSCC--CSCCEEE-T--TEEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCCCEEE---TTEEEECCT
T ss_pred eCCCce--EcCCEEE-C--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-----ecCCCCcEEE---CCEEEEEcC
Confidence 443221 1112222 2 3577888899999999999998877654321000 0000111222 236777888
Q ss_pred CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCcc
Q 009266 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVS 304 (538)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 304 (538)
++.|..++..+++.........+........+......++ + .++.+++.+.++.++.++..+++...
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~-~~~~v~~~~~~g~l~~~d~~tG~~~w-------- 263 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----V-VNGVVFALAYNGNLTALDLRSGQIMW-------- 263 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCE----E-ETTEEEEECTTSCEEEEETTTCCEEE--------
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE----E-ECCEEEEEecCcEEEEEECCCCcEEe--------
Confidence 9999999998887543322211100000000000000111 1 13444444457789999987753211
Q ss_pred ccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeec-
Q 009266 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA- 383 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~- 383 (538)
... ... ...+.. .+..|++++.++.|+.++..+++.+.....
T Consensus 264 ------------------------------~~~--~~~--~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~ 306 (376)
T 3q7m_A 264 ------------------------------KRE--LGS--VNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL 306 (376)
T ss_dssp ------------------------------EEC--CCC--EEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTT
T ss_pred ------------------------------ecc--CCC--CCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeeccc
Confidence 111 111 223333 356777788899999999999998766552
Q ss_pred CcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCcc-ceeeee-cc-cCceeeeccCCCCCcee
Q 009266 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN-IEQVLI-PD-HIRWFALGDDDDGDYYF 450 (538)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~~~-~~-~~~~l~s~~~d~~~~~~ 450 (538)
....+..... .+..|+.++.+|.|++++..+++....... ...+.. +. .++.|+.++.++..+.|
T Consensus 307 ~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 307 LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEE
T ss_pred CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEE
Confidence 2222333333 246788888899999999998876432211 222222 11 45577777777776655
No 226
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.41 E-value=1.9e-11 Score=113.17 Aligned_cols=296 Identities=13% Similarity=0.059 Sum_probs=181.6
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
...|..++.++.|..|+ .+|+.+.. ...+...+.++...++|. |..++.+ |..|+
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~---------------------~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d 84 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWF---------------------FKSGEIIECRPSIGKDGT-IYFGSDK--VYAIN 84 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEES---------------------SCGGGEEEECCEETTTTE-ECCSSCE--EEEEC
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEE---------------------EecCCCcccceEEecCCc-EEEecCc--EEEEC
Confidence 34577777888899999 77876421 122334567777777775 4445544 88888
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (538)
. +++.+..+ ...........+. +..|+.++.++.|..++.. ++.... ...+...+.++...+++ . |+.+
T Consensus 85 ~-~g~~~~~~-~~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~~~~--~~~~~~~~~~~~~~~~g-~-l~vg 153 (330)
T 3hxj_A 85 P-DGTEKWRF-DTKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTEKWR--FKTKKAIYATPIVSEDG-T-IYVG 153 (330)
T ss_dssp C-CGGGGGGS-CC-----CCEEEE----TTEEEEECTTSEEEEECTT-SCEEEE--EECSSCCCSCCEECTTS-C-EEEE
T ss_pred C-CCcEEEEE-ECCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCEEEE--EcCCCceeeeeEEcCCC-E-EEEE
Confidence 5 66655444 2222222233332 4567778888999999987 655443 23344456677777777 3 6677
Q ss_pred cCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCc
Q 009266 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (538)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 249 (538)
+.++.|..|+.. ++....+.... ..+.++.+.++ +.+ ..++ +.|..|+ .+++.....
T Consensus 154 t~~~~l~~~d~~-g~~~~~~~~~~----------~~~~~~~~d~~-g~l-~v~t--~~l~~~d-~~g~~~~~~------- 210 (330)
T 3hxj_A 154 SNDNYLYAINPD-GTEKWRFKTND----------AITSAASIGKD-GTI-YFGS--DKVYAIN-PDGTEKWNF------- 210 (330)
T ss_dssp CTTSEEEEECTT-SCEEEEEECSS----------CCCSCCEECTT-CCE-EEES--SSEEEEC-TTSCEEEEE-------
T ss_pred cCCCEEEEECCC-CCEeEEEecCC----------CceeeeEEcCC-CEE-EEEe--CEEEEEC-CCCcEEEEE-------
Confidence 788999999988 77665554321 13566677665 444 4444 7889999 554322110
Q ss_pred ccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCc
Q 009266 250 YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (538)
Q Consensus 250 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
......+.+++..++|.++++..++.|..++....
T Consensus 211 --------~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~------------------------------------- 245 (330)
T 3hxj_A 211 --------YAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGT------------------------------------- 245 (330)
T ss_dssp --------CCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSC-------------------------------------
T ss_pred --------ccCCcceeceEECCCCeEEEEcCCCeEEEECCCCC-------------------------------------
Confidence 01123467788888888777777788888874321
Q ss_pred ccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCce
Q 009266 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI 409 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v 409 (538)
....+...... +..+.+ .+++ .|..++.+|.|..++. +++.+..+......+.++...++++ |..++.+|.+
T Consensus 246 --~~~~~~~~~~~--~~~~~~-~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~ 317 (330)
T 3hxj_A 246 --EKWRFKTGKRI--ESSPVI-GNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKF 317 (330)
T ss_dssp --EEEEEECSSCC--CSCCEE-CTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCE
T ss_pred --EeEEeeCCCCc--cccceE-cCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeE
Confidence 11122211111 223444 5555 4666777888999996 7777777765566677888877776 4557788999
Q ss_pred EEecCCCC
Q 009266 410 KILTPNAA 417 (538)
Q Consensus 410 ~vw~~~~~ 417 (538)
++......
T Consensus 318 ~~~~~~~~ 325 (330)
T 3hxj_A 318 YALFNLEH 325 (330)
T ss_dssp EEEEC---
T ss_pred EEEecccc
Confidence 98776543
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=3.4e-10 Score=104.14 Aligned_cols=220 Identities=11% Similarity=0.059 Sum_probs=136.9
Q ss_pred CCCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEE
Q 009266 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (538)
Q Consensus 7 ~~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~ 86 (538)
+..+.++++....+.|.+|+..+++.. .+. +...|.+++|+|+|+++++. . ..|.
T Consensus 58 ~~~~~l~~~d~~~~~i~~~d~~~~~~~----------------------~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~ 112 (326)
T 2ghs_A 58 PASGTAWWFNILERELHELHLASGRKT----------------------VHA-LPFMGSALAKISDSKQLIAS-D-DGLF 112 (326)
T ss_dssp TTTTEEEEEEGGGTEEEEEETTTTEEE----------------------EEE-CSSCEEEEEEEETTEEEEEE-T-TEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEE----------------------EEE-CCCcceEEEEeCCCeEEEEE-C-CCEE
Confidence 334666777777888999988866542 111 24579999999999887765 3 3599
Q ss_pred EEECCCCceeeeecc--C-CCCCeEEEEEeecCCCceEEEEeCC----CcEEEeecccCceeeeeeccccCCCcEEEEEc
Q 009266 87 LWDWKTERVKLSFHS--G-HNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (538)
Q Consensus 87 iw~~~~~~~~~~~~~--~-~~~~v~~l~~~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (538)
+|+..+++....... . ....++.++++| +|+++++.... +...||.+.+++. .. +..+......++|+
T Consensus 113 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~g~~-~~--~~~~~~~~~~i~~s 187 (326)
T 2ghs_A 113 LRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAKGKV-TK--LFADISIPNSICFS 187 (326)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEETTEE-EE--EEEEESSEEEEEEC
T ss_pred EEECCCCcEEEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeCCcE-EE--eeCCCcccCCeEEc
Confidence 999988875322211 1 123688999999 89876655421 2344444443332 21 22233456789999
Q ss_pred CCCCcEEEEEcCCCcEEEEecC--CC-Cee--eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 160 PGSPHVFYTCGEDGLVQHFDLR--TG-AAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~--~~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
|++..++++.+..+.|.+|++. ++ ... ..+..... ....+..+++.++ +++.++....+.|.+|+.
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-------~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~- 258 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-------IKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT- 258 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-------SSSEEEEEEECTT-SCEEEEEETTTEEEEECT-
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-------CCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-
Confidence 9995455666677899999986 55 321 11211100 1124578999997 677776666788999997
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEc-CCCCEEEEEc
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN 280 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~ 280 (538)
+++.... .......+.+++|+ |+++.|++++
T Consensus 259 ~g~~~~~---------------i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 259 DGNHIAR---------------YEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp TCCEEEE---------------EECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCEEEE---------------EECCCCCcEEEEEecCCCCEEEEEe
Confidence 3432111 11123468999998 8877654443
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=6.7e-11 Score=109.79 Aligned_cols=238 Identities=10% Similarity=0.010 Sum_probs=144.3
Q ss_pred CCeEEEEEeecCCCceEEEEeC--CCcEEEeecccCceeee----eeccccCCCcEEEEEcCCCCcEEEEEcC-----CC
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET----KLLGKHQGRAHKLAIEPGSPHVFYTCGE-----DG 173 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~--dg~v~vwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg 173 (538)
..+..|+++| +|+++++... ++.++||.+.+++.... .....|...+..+++.+++ +++++-.. .+
T Consensus 17 ~~p~~va~~~--~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTP--DGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECT--TSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECC--CCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 6789999999 9988888642 34366666654432211 0112345679999999998 56555433 57
Q ss_pred cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCccccCCCCCCCCCcc
Q 009266 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADY 250 (538)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~ 250 (538)
.|.+||+.+++.+..+........ ....+..++++|+++.++++.. ..+.|.+|++.+++.....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~----~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-------- 161 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITL----SNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL-------- 161 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSC----TTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC--------
T ss_pred eEEEEECCCCeEEEEEECChhhcc----cccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe--------
Confidence 899999999987766654321110 1224688999986566666665 6789999999876532110
Q ss_pred cCCCCccCCCccc-eEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCC
Q 009266 251 FCPPNLIGDEQVG-ITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (538)
Q Consensus 251 ~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
..|... .....+.++|+.+.+.. ++.++.|..
T Consensus 162 -------~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--------------------------------------- 195 (343)
T 2qe8_A 162 -------QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--------------------------------------- 195 (343)
T ss_dssp -------TTCTTTSCCSCCCEETTEECBEECTTSCEECCCC---------------------------------------
T ss_pred -------cCCCcccccccceeECCEEEEeccCCCceeceec---------------------------------------
Confidence 000000 00022333444433322 223322210
Q ss_pred cccCCceeeccccceeeeEEEEecCCCcEEEEeccCC-eEEEeeccC---c-----ceeE--EeecCcceeeEEeecCCC
Q 009266 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKKG---G-----ELIR--VIEADRHVVNCIEPHPHS 397 (538)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg-~i~iwd~~~---~-----~~~~--~~~~h~~~v~~~~~s~~~ 397 (538)
.+..+++ +|+|++|+.+...+ .|+.++... + +... ...++.+....++++++|
T Consensus 196 ---------------~~~gia~-s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G 259 (343)
T 2qe8_A 196 ---------------GVNGIVL-DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH 259 (343)
T ss_dssp ---------------CEEEEEE-CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC
T ss_pred ---------------ccceeEe-ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC
Confidence 1567888 99999888876665 555555321 1 1111 122344467789999999
Q ss_pred CeEEEeecCCceEEecCCCCcc
Q 009266 398 TVLASSGIESDIKILTPNAADR 419 (538)
Q Consensus 398 ~~l~s~~~dg~v~vw~~~~~~~ 419 (538)
+++++....+.|.+|+..+++.
T Consensus 260 ~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 260 NIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp CEEEEEGGGTEEEEEETTTTEE
T ss_pred CEEEEccCCCeEEEEECCCCCE
Confidence 9999999999999999944443
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.32 E-value=2.9e-10 Score=115.21 Aligned_cols=330 Identities=11% Similarity=0.097 Sum_probs=180.1
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCC---------Ce-EEEEEeecCCCceEEEEeCCCcEEEeecccCceee
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHND---------NV-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~---------~v-~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 142 (538)
+..|+.++.++.|..+|..+|+.+.++...... .+ ..+++ .+..|++++.++.|..+|..+++.+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEee
Confidence 556777777889999999999998877321110 01 11222 45678888899999999999998876
Q ss_pred eeeccccCCCcEEEEEcC---CCCcEEEEEc------CCCcEEEEecCCCCeeeeeeecccCCCCCc-------------
Q 009266 143 TKLLGKHQGRAHKLAIEP---GSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDRRNY------------- 200 (538)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~---~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------- 200 (538)
......+......+..+| ++ . ++++. .++.|+.||.++++.+..+...........
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g-~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNG-K-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETT-E-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eecCcCCCCCCccccCCcEEECC-E-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 544320111111111122 34 3 44443 368999999999999887753211000000
Q ss_pred --------ceeeeeEEEEEcCCCCcEEEEEeCCCe-------------------EEEEEcCCccccCCCCCCCCCcccCC
Q 009266 201 --------MTVVNLNAIAIDPRNANLFAVAGSDEY-------------------TRLYDIRKYKWDGSTDFGQPADYFCP 253 (538)
Q Consensus 201 --------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------v~iwd~~~~~~~~~~~~~~~~~~~~~ 253 (538)
........++++|. ..+|+.++.++. |..||..+++..-......
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~------- 295 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP------- 295 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST-------
T ss_pred CceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC-------
Confidence 01111236788887 567888887764 9999999987643322110
Q ss_pred CCccC-CCccceEEEEEcCCCC---EEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC-CCCC
Q 009266 254 PNLIG-DEQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS-TANT 327 (538)
Q Consensus 254 ~~~~~-~~~~~i~~~~~s~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 327 (538)
..... .....+....+..+|+ .|+.++ ++.++++|..+++.+...+..+.. +........ ...+.... ....
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~~~-~~pi~~~~~~~~~ 373 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDMKT-GRPILDEENAAYW 373 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEETTT-TEEEECHHHHCTT
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCccC-CCcccchhhcccc
Confidence 00000 0011222222223554 566666 679999999998765433222211 000000000 00000000 0000
Q ss_pred CcccCCceeeccccceeeeEEEEecCCCcEEEEecc--------------------------------------------
Q 009266 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-------------------------------------------- 363 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~-------------------------------------------- 363 (538)
........+.+..+...-..++| +|+..+|++...
T Consensus 374 ~~~~~~~~~p~~~Gg~~w~~~a~-dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~ 452 (689)
T 1yiq_A 374 KNGKRNLVTPAFWGAHDWQPMSY-NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKS 452 (689)
T ss_dssp TSSSCEEESSCTTCSSCSSCCEE-ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTT
T ss_pred CCCCeeEeCCCcccccCCCcceE-CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCC
Confidence 00000000000000000122444 666555554321
Q ss_pred -CCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 364 -CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 364 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
+|.|+.||+.+++.+-+++.+. ++....+...+.+|++++.||.|++||..+++..
T Consensus 453 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 453 WSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4789999999999988877554 3444466677889999999999999999998764
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.30 E-value=4.6e-13 Score=125.41 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=77.8
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC
Q 009266 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (538)
Q Consensus 72 ~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 151 (538)
++.+|++++.++.|+.||..+|+.+.++. . ..+.+..+.+ ++..+++++.+|.|+.||..+++.+.. +..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~--~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTK--LPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEE--CSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCceeee--eeccCc
Confidence 47789999999999999999999988873 3 4555555666 777888888999999999988876544 222211
Q ss_pred -CcE-EEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEE
Q 009266 152 -RAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (538)
Q Consensus 152 -~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 229 (538)
.+. +..+.. + ..+++++.++.|+.||..+++.+..+.... ...++|. +..+++++.++.|+
T Consensus 81 ~~~~~sp~~~~-~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--------------~~~~~p~-~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 81 ELVQASPCRSS-D-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--------------ADSLSPS-TSLLYLGRTEYTIT 143 (369)
T ss_dssp HHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------------------EEEEEEEEEEE
T ss_pred cccccCceEec-C-CEEEEEeCCCEEEEEECCCCcEEEEecCCC--------------ccccccc-CCEEEEEecCCEEE
Confidence 110 111112 3 357778888999999999998876655321 1234454 56777778888888
Q ss_pred EEEcCCcc
Q 009266 230 LYDIRKYK 237 (538)
Q Consensus 230 iwd~~~~~ 237 (538)
.||.++++
T Consensus 144 a~d~~tG~ 151 (369)
T 2hz6_A 144 MYDTKTRE 151 (369)
T ss_dssp CCCSSSSS
T ss_pred EEECCCCC
Confidence 88887765
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.30 E-value=1.3e-10 Score=118.56 Aligned_cols=234 Identities=13% Similarity=0.113 Sum_probs=146.2
Q ss_pred CCCCCCceEE-----eeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEe
Q 009266 5 SNNNNNKRAR-----TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (538)
Q Consensus 5 ~~~~~~~~l~-----t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~ 79 (538)
.++|++++|| .|+...+|+|||+.+|+.+. ..+.+ .....++|+ ||+.|+.+
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~--------------------~~~~~--~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE--------------------TPLKD--VKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE--------------------EEEEE--EESCCCEEE-TTTEEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc--------------------cccCC--ceeccEEEe-CCCEEEEE
Confidence 4688999888 34445789999999998641 11211 113567899 99999988
Q ss_pred cCCC-------------eEEEEECCCCcee--eee-ccC-CCCCeEEEEEeecCCCceEEEEeC----CCcEEEeecccC
Q 009266 80 SDDR-------------RVILWDWKTERVK--LSF-HSG-HNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILER 138 (538)
Q Consensus 80 ~~d~-------------~i~iw~~~~~~~~--~~~-~~~-~~~~v~~l~~~~~~~~~~l~s~~~----dg~v~vwd~~~~ 138 (538)
+.+. .|++|++.++... ..+ ... |...+..+.|+| +|++|+.... .+.|.++++.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTST
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCC
Confidence 7763 4999999876532 111 123 445678899999 9998865442 358999998776
Q ss_pred ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC---CcEEEEecCCCCe--eeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
.... ..+..+....... +++++..+++.+..+ +.|.++++.++.. ...+..+. ..+. .|++
T Consensus 270 ~~~~-~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----------~~~~--~~s~ 335 (693)
T 3iuj_A 270 NAPL-LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER----------QQVL--TVHS 335 (693)
T ss_dssp TCCC-EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC----------SSCE--EEEE
T ss_pred CCce-EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC----------CCEE--EEEE
Confidence 4222 1244455555555 566665666666554 5799999988754 22332221 1233 7788
Q ss_pred CCCcEEEEEeCCC--eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEE-cC----CeEEE
Q 009266 214 RNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-ND----EFIYL 286 (538)
Q Consensus 214 ~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~----~~i~~ 286 (538)
++..++++...++ .|++|++..+.. ..+.......+..+.++|++..|+.. +. ..|+.
T Consensus 336 ~g~~lv~~~~~~g~~~l~~~d~~g~~~---------------~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~ 400 (693)
T 3iuj_A 336 GSGYLFAEYMVDATARVEQFDYEGKRV---------------REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR 400 (693)
T ss_dssp ETTEEEEEEEETTEEEEEEECTTSCEE---------------EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEE
T ss_pred ECCEEEEEEEECCeeEEEEEECCCCee---------------EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEE
Confidence 7444455555555 688888764431 11111223467778888887755443 33 57999
Q ss_pred eeccCC
Q 009266 287 FTQDMG 292 (538)
Q Consensus 287 ~d~~~~ 292 (538)
|++.++
T Consensus 401 ~d~~~g 406 (693)
T 3iuj_A 401 FEPKSG 406 (693)
T ss_dssp ECTTTC
T ss_pred EECCCC
Confidence 998765
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.29 E-value=2.1e-11 Score=116.80 Aligned_cols=323 Identities=8% Similarity=-0.049 Sum_probs=185.8
Q ss_pred EEeeccCCceEEeeeccCceecc--ccchhhcccccceEEe-eeeeE-----------EcC----CcCcEEEEEEcC---
Q 009266 13 ARTSVDKALVDVWLRELGQLSTR--NFALRRRASEDLVLRL-GIYAK-----------LDK----HRGCVNTVSFNT--- 71 (538)
Q Consensus 13 l~t~~~d~~v~iwd~~~g~~~~~--~~~~~~~~~~~~~~~~-~~~~~-----------~~~----h~~~v~~~~~s~--- 71 (538)
+.+|+..|.|+|+=+.+++.+.. .|.+-...+....-.- +++.. .+| .-+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 78899999999999999998876 5555222222211000 00000 001 012222244444
Q ss_pred --CCCEEEEec-CCCeEEEEECCCCceeeeeccCCCCCeEEEEE-e-ecCCCceEEEEe------------------CCC
Q 009266 72 --DGDILISGS-DDRRVILWDWKTERVKLSFHSGHNDNVFQAKI-M-PFTDDRSIVTCA------------------ADG 128 (538)
Q Consensus 72 --~g~~l~t~~-~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~-~-~~~~~~~l~s~~------------------~dg 128 (538)
+|++|.... .++.|.+.|+.+.++...+.......+..+++ + | ++.++++++ .++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p--~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP--RSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS--BCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC--CCcEEEEecccccccCCCCcccccccccCc
Confidence 787776654 46689999999999776442233456888888 4 7 999998885 246
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC-cEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
.|.+.|..+.+........+ ....++++|+++ ++++++.+. .....+..+.+....+..... -.
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~-----------~~ 240 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG---NLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI-----------AE 240 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS---CCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEH-----------HH
T ss_pred eEEEEECCCCeEEEEEEeCC---CccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeec-----------cc
Confidence 79999998877666544433 345678999994 555555432 211111111111111000000 00
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCc--cc-cCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CC
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKY--KW-DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DE 282 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~ 282 (538)
...+.+++ .+... +.|.+.|.++. +. ... +. -.....++.++|+|++++++. .+
T Consensus 241 ~~~~v~~G-k~~~i----~~V~VID~~~~~~~~~~~~---------------Ip-vg~~PhGv~~sPDGk~v~V~~~~s~ 299 (595)
T 1fwx_A 241 IEKAIAAG-DYQEL----NGVKVVDGRKEASSLFTRY---------------IP-IANNPHGCNMAPDKKHLCVAGKLSP 299 (595)
T ss_dssp HHHHHHHT-CSEEE----TTEEEEECSGGGCCSSEEE---------------EE-EESSCCCEEECTTSSEEEEECTTSS
T ss_pred eeEeccCC-CeeEE----CcEEEEeCcccCCceeEEE---------------Ee-cCCCceEEEEcCCCCEEEEeCCCCC
Confidence 00123332 22222 55999999873 21 000 00 123567899999999988887 45
Q ss_pred eEEEeeccCCCCCC--CCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE
Q 009266 283 FIYLFTQDMGLGPN--PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (538)
Q Consensus 283 ~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~ 360 (538)
+|.++++.+..... .+. ........+..-. ....++| +|+|...++
T Consensus 300 ~VsVid~~~~~~~~~~~l~----------------------------~~~~v~~~v~vG~---gP~h~aF-~~dG~aY~t 347 (595)
T 1fwx_A 300 TVTVLDVTRFDAVFYENAD----------------------------PRSAVVAEPELGL---GPLHTAF-DGRGNAYTS 347 (595)
T ss_dssp BEEEEEGGGHHHHHHSCCC----------------------------GGGGEEECCBCCS---CEEEEEE-CTTSEEEEE
T ss_pred eEEEEECcccccccccccC----------------------------cccceEEEcCCCC---CcceEEE-CCCCeEEEE
Confidence 89999988521000 000 0000111111111 2677888 999955556
Q ss_pred eccCCeEEEeeccC----------cceeEEeecCccee-----eEEeecCCCCeEEEeec
Q 009266 361 GSDCGRIFIWKKKG----------GELIRVIEADRHVV-----NCIEPHPHSTVLASSGI 405 (538)
Q Consensus 361 gs~dg~i~iwd~~~----------~~~~~~~~~h~~~v-----~~~~~s~~~~~l~s~~~ 405 (538)
.-.++.|.+|++.+ .+.+.++..|-.+- ..+.++|+|++|+++..
T Consensus 348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 77899999999987 56677777664432 34467899999988854
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.26 E-value=1.3e-08 Score=90.60 Aligned_cols=252 Identities=12% Similarity=0.064 Sum_probs=152.2
Q ss_pred CEEEEecCCCeEEEEECCCCcee----eeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeecccCceeeeeeccc
Q 009266 74 DILISGSDDRRVILWDWKTERVK----LSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGK 148 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~ 148 (538)
++|+.+.. +.|+.+++...... ..++......+..++|.| .+..|+.+. ..+.|.++++........ +..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTTI--IRQ 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEEE--ECT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEEE--EEC
Confidence 45555543 47888887754321 111122234578999998 666665554 578999999875543221 222
Q ss_pred cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC--CC
Q 009266 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--DE 226 (538)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg 226 (538)
.......+++.|.+..++++-...+.|.++++.......... . .......++++|+++.++++... .+
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~---------~~~~P~~i~vd~~~g~lyv~~~~~~~~ 146 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-T---------GLVNPRGIVTDPVRGNLYWTDWNRDNP 146 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S---------SCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-C---------CCCCccEEEEeeCCCEEEEEECCCCCc
Confidence 234678999999765677777777899999987543222211 1 01135789999964555555443 46
Q ss_pred eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCcc
Q 009266 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVS 304 (538)
Q Consensus 227 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~ 304 (538)
.|..+++..... ..+..........++++|++..|..+. .+.|.++++...
T Consensus 147 ~I~~~~~dg~~~---------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~------------ 199 (267)
T 1npe_A 147 KIETSHMDGTNR---------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP------------ 199 (267)
T ss_dssp EEEEEETTSCCC---------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE------------
T ss_pred EEEEEecCCCCc---------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC------------
Confidence 888887753210 001111124578999999876665554 458999987641
Q ss_pred ccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecC
Q 009266 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h 384 (538)
.....+.+... ...++. . .+.++++....+.|.+++..+++.+..+...
T Consensus 200 --------------------------~~~~~~~~~~~---P~gi~~-d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 200 --------------------------GRRKVLEGLQY---PFAVTS-Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248 (267)
T ss_dssp --------------------------EEEEEEECCCS---EEEEEE-E-TTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred --------------------------ceEEEecCCCC---ceEEEE-e-CCEEEEEECCCCeEEEEeCCCCCceEEEccc
Confidence 11111121111 345555 3 4445555556789999999999998888644
Q ss_pred c-ceeeEEeecCCCC
Q 009266 385 R-HVVNCIEPHPHST 398 (538)
Q Consensus 385 ~-~~v~~~~~s~~~~ 398 (538)
. .....+++.|++.
T Consensus 249 ~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 249 KQTRLYGITIALSQC 263 (267)
T ss_dssp SCCCCCCEEEECSCC
T ss_pred cccccceeeecCccC
Confidence 3 2477888888764
No 234
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.24 E-value=1.3e-07 Score=98.40 Aligned_cols=301 Identities=10% Similarity=0.061 Sum_probs=180.1
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeee
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 143 (538)
|.++...++|.+.+ |+..+-|..|+..+++........+...|.++...+ ++.+.+ ++..+-|.+|+..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQS--PTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEE--TTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC--CCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 88898888886655 454445889998776653322123456788888887 766554 44444488898776543322
Q ss_pred eec-----cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 144 KLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 144 ~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
... .-....|.++...+++ . |..|+.. -|.+|+..++........... ........|.++...++ + .
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~---~~~l~~~~i~~i~~D~~-g-~ 322 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVE---NGSLSQRSVRSIFMDSQ-G-G 322 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTS---TTSCSSSCEEEEEECTT-S-C
T ss_pred ecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCC---CCCCCCCcEEEEEEeCC-c-C
Confidence 110 0123568999998888 4 4445555 588999877654332211100 01112346999999987 4 4
Q ss_pred EEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCC
Q 009266 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (538)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~ 298 (538)
|..|+..+-|..|+....+...... ......-....|.++...++|.+.+....+.|..|+..++......
T Consensus 323 lWigt~~~Gl~~~~~~~~~~~~~~~---------~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~ 393 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRFKNIRN---------IPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYT 393 (795)
T ss_dssp EEEEESSSCEEEECGGGGSSEEECC---------CTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEEC
T ss_pred EEEEECCCCeEEeCCCcccceEEcC---------CCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEe
Confidence 5567777788899876653211100 0000011245699999999998887666778999987653110000
Q ss_pred CCCCccccccccccCCCCccccCCCCCCCCcccCCceeec-cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcce
Q 009266 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (538)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~ 377 (538)
....-.. .-....|.+++. .++|++|..|+.++-|.+|+..+++.
T Consensus 394 ---------------------------------~~~~~~~~~l~~~~v~~i~~-d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 394 ---------------------------------LQEDESARGIGSNNIKAVYV-DEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp ---------------------------------CC------CCSCSCEEEEEE-ETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred ---------------------------------cCCCCcccCCCCccEEEEEE-cCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 0000000 000113788887 88888566777777799999887764
Q ss_pred eEEee----cCcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccc
Q 009266 378 IRVIE----ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (538)
Q Consensus 378 ~~~~~----~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 421 (538)
..... .+...|.++...+++++.+.+. +.|.+|+..+++...
T Consensus 440 ~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 440 ENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTT 485 (795)
T ss_dssp EEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEE
T ss_pred EEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEE
Confidence 43221 1345789999988888666554 568889988765433
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.24 E-value=2.8e-12 Score=120.10 Aligned_cols=185 Identities=12% Similarity=0.016 Sum_probs=105.7
Q ss_pred CCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEE
Q 009266 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (538)
Q Consensus 9 ~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw 88 (538)
.+.++++++.+|.|+.||..+|+++- .+.. +.+.+..+.+++.++++++.++.|+.|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---------------------~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~ 64 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---------------------TLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTL 64 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---------------------EEEC--CCSCCCC-----CCEEECTTTCCEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---------------------EecC--CCceecceEcCCCEEEEeCCCCEEEEE
Confidence 46789999999999999999999762 2222 344455556678888888899999999
Q ss_pred ECCCCceeeeeccCCCC-CeEEEEEeecC-CCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEE
Q 009266 89 DWKTERVKLSFHSGHND-NVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~v~~l~~~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
|..+|+.+..+ ..+.. .+. .+|.. .+..|++++.++.|+.||..+++.+.. +..+. ...++|.+ ..+
T Consensus 65 d~~tG~~~w~~-~~~~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~--~~~~~----~~~~~p~~-~~v 133 (369)
T 2hz6_A 65 GSKNNEGLTKL-PFTIPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT--LSSAF----ADSLSPST-SLL 133 (369)
T ss_dssp -----CCSEEC-SCCHHHHHT---TCSCC-----CCCCEEEEEEEEECCC-----------------------------E
T ss_pred ECCCCceeeee-eccCccccc---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEE--ecCCC----cccccccC-CEE
Confidence 99999876655 22211 111 11111 345778888899999999999887655 33232 23456666 578
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCC--CcEEEEEeCCCeEEEEEcCCcccc
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAVAGSDEYTRLYDIRKYKWD 239 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~ 239 (538)
++++.++.|+.||.++++.+..+.... ....++.++. ...+++++.+|.|+.||..+++..
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~------------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD------------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE------------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc------------ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 888899999999999998876665221 1222333321 145677889999999999988753
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=1.4e-09 Score=109.87 Aligned_cols=327 Identities=11% Similarity=0.044 Sum_probs=183.1
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCC----------CeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHND----------NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~----------~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 142 (538)
+..|+.++.++.|..+|..+|+.+.++...... ....+++ .+..|++++.++.|..+|..+++.+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 456666777889999999999988776322110 0122333 45678888899999999999998876
Q ss_pred eeecc-ccC--CCcEE-EEEcCCCCcEEEEEcC------CCcEEEEecCCCCeeeeeeecccCC---------------C
Q 009266 143 TKLLG-KHQ--GRAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDD---------------R 197 (538)
Q Consensus 143 ~~~~~-~~~--~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~---------------~ 197 (538)
..... ... ..+.. ..+ .++ .+++++. ++.|+.||..+++.+..+....... .
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v-~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRV-FKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEE-ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eecCCcCcCcCcccccCcEE-ECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 64432 100 11111 111 133 3455443 6899999999999988776533211 0
Q ss_pred C--Cc-----ceeeeeEEEEEcCCCCcEEEEEeCCC-------------------eEEEEEcCCccccCCCCCCCCCccc
Q 009266 198 R--NY-----MTVVNLNAIAIDPRNANLFAVAGSDE-------------------YTRLYDIRKYKWDGSTDFGQPADYF 251 (538)
Q Consensus 198 ~--~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~~~~~~~~ 251 (538)
. +. ........++++|+ ..+|+.++.++ .|..+|..+++..-.++.....
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d--- 305 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD--- 305 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC---
T ss_pred cccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc---
Confidence 0 00 01112246788887 56777776654 4889999988764432221100
Q ss_pred CCCCccCCCccceEEEEEcCCC---CEEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCC
Q 009266 252 CPPNLIGDEQVGITGLAFSDQS---ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (538)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (538)
...........-+....+| ..|+.++ ++.|+++|..+++.+..+...+..... .+...++.+.......
T Consensus 306 ---~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~---~~d~~g~~~~~~~~~~- 378 (677)
T 1kb0_A 306 ---NWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS---GYDKHGKPIGIAAARD- 378 (677)
T ss_dssp ---CSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE---EECTTSCEEECGGGGC-
T ss_pred ---ccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc---ccCCCCceeeccccCc-
Confidence 0000001122223333467 5666666 679999999998765443322211000 0000000000000000
Q ss_pred CcccCCceeeccccceeeeEEEEecCCCcEEEEecc-------------------------------------------C
Q 009266 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-------------------------------------------C 364 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~-------------------------------------------d 364 (538)
.......+.+..+...-..++| +|++.+|++... .
T Consensus 379 -~~~~~~~~P~~~G~~~w~~~a~-dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 456 (677)
T 1kb0_A 379 -GSKPQDAVPGPYGAHNWHPMSF-NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPF 456 (677)
T ss_dssp -TTSCEECSSCTTCSSCSSCCEE-ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCE
T ss_pred -CCCccEECcCcccccCCCCceE-cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCc
Confidence 0000000000000000124555 777776666432 2
Q ss_pred CeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
|.|+.||+.+++.+-+++. ..++....+...+.+++.++.+|.|++|+..+++..
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 7899999999998877763 334556667778888999999999999999998763
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.23 E-value=1.2e-08 Score=94.46 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=125.6
Q ss_pred CCCCEEEE-ecCCCeEEEEECCCC----ceeeeec------cCCCCCeEEEEEeecCCCceEEEEeCC------CcEEEe
Q 009266 71 TDGDILIS-GSDDRRVILWDWKTE----RVKLSFH------SGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHA 133 (538)
Q Consensus 71 ~~g~~l~t-~~~d~~i~iw~~~~~----~~~~~~~------~~~~~~v~~l~~~~~~~~~~l~s~~~d------g~v~vw 133 (538)
+++++|+. +..+++|.++|+.+. +...++. +........+..+| +| +++++..+ |.|.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCeEEEE
Confidence 77777654 566789999998755 3333331 00112455677888 88 77766655 789999
Q ss_pred ecccCceeeeeeccccC-CCcEEEEEcCCCCcEEEEEc-------------------CCCcEEEEecCCCCeeeeeeecc
Q 009266 134 QILERGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCG-------------------EDGLVQHFDLRTGAATELFTCRP 193 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~ 193 (538)
|..+.+.+......... ..-..+.|+|++ +.+++.. ...+|.+||+.+++.++.+....
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 99988877663333232 223457889999 5777764 36899999999987777766421
Q ss_pred cCCCCCcceeeeeEEEE--EcCCCCcEEEEEe------CCCeEEEEEcCCccccCCCCCCCCCccc--CCCCcc---CCC
Q 009266 194 IDDRRNYMTVVNLNAIA--IDPRNANLFAVAG------SDEYTRLYDIRKYKWDGSTDFGQPADYF--CPPNLI---GDE 260 (538)
Q Consensus 194 ~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~ 260 (538)
. . .....+. |+|+ ++++++++ .+++|.+|....+++.....+..+.... .+.... ...
T Consensus 249 ~-------g-~~P~~i~f~~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 249 E-------N-RMALELRPLHDPT-KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp T-------E-EEEEEEEECSSTT-CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred C-------C-CccceeEeeECCC-CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 1 1 1233444 4998 55655555 5678877665543221110000000000 000000 000
Q ss_pred ccceEEEEEcCCCCEEEEEc--CCeEEEeeccC
Q 009266 261 QVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~ 291 (538)
...+..|.++|+|++|.++. .+.|.+|++..
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 23577899999999998887 45899999864
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=6.7e-09 Score=104.92 Aligned_cols=213 Identities=15% Similarity=0.080 Sum_probs=122.3
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCc-CcE-EEEEEcCCCCEEEEecCCCeEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
+.+|++++.++.|.-+|..+|+.+-+....... . ....+. ..+ ..+++ .+..|+.++.++.|..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~-----------~-~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~a 131 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAK-----------V-KARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIA 131 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCG-----------G-GGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCc-----------c-ccccccccCCccceEE--ECCEEEEEcCCCEEEE
Confidence 456777777888999999888876321100000 0 000000 000 11222 2557788888999999
Q ss_pred EECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC------CCcEEEeecccCceeeeeecccc------------
Q 009266 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKH------------ 149 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~~~~------------ 149 (538)
+|..+|+.+.++..........+..+|...+..++++.. +|.|..+|..+++.+........
T Consensus 132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 211 (668)
T 1kv9_A 132 LDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211 (668)
T ss_dssp EETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred EECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccc
Confidence 999999998776432211111111111112334555443 58999999999988765332110
Q ss_pred -----------------CCCcEEEEEcCCCCcEEEEEcCCC-------------------cEEEEecCCCCeeeeeeecc
Q 009266 150 -----------------QGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFTCRP 193 (538)
Q Consensus 150 -----------------~~~v~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~ 193 (538)
......+++.|.. .+++.++.++ .|..+|+.+++.+..++...
T Consensus 212 ~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~ 290 (668)
T 1kv9_A 212 EAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP 290 (668)
T ss_dssp HHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred cccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC
Confidence 0111246788876 5777777665 49999999999988876532
Q ss_pred cCCCCCcceeeeeEEEEEcCCCCc---EEEEEeCCCeEEEEEcCCcccc
Q 009266 194 IDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWD 239 (538)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~ 239 (538)
.... ......++....+..+ +. .++.++.+|.++++|..+++++
T Consensus 291 ~~~w-d~~~~~~~~~~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 291 GDSW-DFTATQQITLAELNID-GKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TCCS-CCCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred Cccc-cccCCCCcEEEEeccC-CcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 1110 0000112222222223 33 6888999999999999999876
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.19 E-value=3.2e-09 Score=98.15 Aligned_cols=251 Identities=12% Similarity=0.062 Sum_probs=146.1
Q ss_pred CCCce-EEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEc------C-CcCcEEEEEEcCCCCEEEEe
Q 009266 8 NNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD------K-HRGCVNTVSFNTDGDILISG 79 (538)
Q Consensus 8 ~~~~~-l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~~~~s~~g~~l~t~ 79 (538)
+++++ ++++..+++|.|+|+.+... +.++.+++. . -...-..+..+|+| +++++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~-----------------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~ 154 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPR-----------------EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISA 154 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTT-----------------SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCC-----------------CceeeeeechhhcccccCCCcccceeECCCe-EEEEc
Confidence 55555 55567889999999874411 011223331 0 11234567888999 77766
Q ss_pred cCC------CeEEEEECCCCceeeeeccCCC--CCeEEEEEeecCCCceEEEEe-------------------CCCcEEE
Q 009266 80 SDD------RRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVTCA-------------------ADGQVRH 132 (538)
Q Consensus 80 ~~d------~~i~iw~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~l~s~~-------------------~dg~v~v 132 (538)
..+ +.|.++|..+++.+.++..+-. ..-+.+.|+| +++.+++.. ...+|.+
T Consensus 155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 155 LGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC--CCCEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 554 7899999999999888743311 2244588899 999888884 3689999
Q ss_pred eecccCceeeeeeccccCCCcEEEEE--cCCCCcEEEEEc-----CCCcEEEEecCCCCee--eeeeecccC---CCC--
Q 009266 133 AQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCG-----EDGLVQHFDLRTGAAT--ELFTCRPID---DRR-- 198 (538)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~--~~~~~~~~~---~~~-- 198 (538)
|++.+++.+....+.........|.| +|+++..++++- .+++|.+|....+... +.+...... ..+
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 99998766655444212233455555 999965555555 6778888776654321 111111100 000
Q ss_pred --Ccce-eeeeEEEEEcCCCCcEEEEE-eCCCeEEEEEcCCc---cccCCCCCCCCCcccCCCCccCCCccceEEEEEcC
Q 009266 199 --NYMT-VVNLNAIAIDPRNANLFAVA-GSDEYTRLYDIRKY---KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (538)
Q Consensus 199 --~~~~-~~~v~~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 271 (538)
+... ......|.++|++ ++|.++ -..+.|.+|++... ++......+.......... -..-......++++|
T Consensus 313 ~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~-G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPA-GHKLTGAPQMLEISR 390 (462)
T ss_dssp GGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTT-SCCCCSCCCCEEECT
T ss_pred ccccccCCCceeEEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccc-cccCCCCCCEEEEcC
Confidence 0000 1346789999984 555554 45789999998632 2222221111000000000 000012467899999
Q ss_pred CCCEEEEEc
Q 009266 272 QSELLVSYN 280 (538)
Q Consensus 272 ~~~~l~~~~ 280 (538)
+|++|+++.
T Consensus 391 DGk~LyVaN 399 (462)
T 2ece_A 391 DGRRVYVTN 399 (462)
T ss_dssp TSSEEEEEC
T ss_pred CCCEEEEEc
Confidence 999988776
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.17 E-value=7e-07 Score=92.87 Aligned_cols=297 Identities=7% Similarity=0.039 Sum_probs=180.6
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec------cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEee
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd 134 (538)
...|.++...++|.+.+.. ..| |.+|+..++....-.. .-....|.+|...+ +|. |..|+..+-|.+|+
T Consensus 262 ~~~i~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~--~g~-lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGT-FND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS--QGG-MWLGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSCEEEEE-SSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT--TSC-EEEEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEe-CCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC--CcC-EEEEECCCCeEEeC
Confidence 3579999999988766544 444 8899987765432211 11235799998886 664 66677777788888
Q ss_pred cccCceeeeeecc----ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 135 ILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 135 ~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
..+.......... -....|.++...+++ . |..|+.++-|..|+..+++............ .+ .....|.+++
T Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~-~~-l~~~~v~~i~ 412 (795)
T 4a2l_A 337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESA-RG-IGSNNIKAVY 412 (795)
T ss_dssp GGGGSSEEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEEEECCC-------C-CSCSCEEEEE
T ss_pred CCcccceEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcc-cC-CCCccEEEEE
Confidence 7654332211010 123568999988887 3 5667777789999988765443221110000 00 0123688999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeecc
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (538)
..++ +++|.+|+.++-|.+|+..+++..... .. ........|.++...++|++.++.. +.|.+|+..
T Consensus 413 ~d~~-g~~lWigt~~~Gl~~~d~~~~~~~~~~----------~~-~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~ 479 (795)
T 4a2l_A 413 VDEK-KSLVYIGTHAGGLSILHRNSGQVENFN----------QR-NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPE 479 (795)
T ss_dssp EETT-TTEEEEEETTTEEEEEETTTCCEEEEC----------TT-TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETT
T ss_pred EcCC-CCEEEEEeCcCceeEEeCCCCcEEEee----------cC-CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCC
Confidence 8886 564677788788999998876532110 00 0001245789999999998777766 678899876
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEe
Q 009266 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (538)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iw 370 (538)
++....... ......+ .. ..|.++.. .++|++.+... +-|.+|
T Consensus 480 ~~~~~~~~~------------------------------~~~~~~~--~~--~~i~~i~~-d~~g~lWigt~--~Gl~~~ 522 (795)
T 4a2l_A 480 QRSFTTIEK------------------------------EKDGTPV--VS--KQITTLFR-DSHKRLWIGGE--EGLSVF 522 (795)
T ss_dssp TTEEEECCB------------------------------CTTCCBC--CC--CCEEEEEE-CTTCCEEEEES--SCEEEE
T ss_pred CCeEEEccc------------------------------ccccccc--CC--ceEEEEEE-CCCCCEEEEeC--CceEEE
Confidence 531100000 0000000 01 13778877 88887666544 458888
Q ss_pred eccCcceeEEee-------cCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 371 KKKGGELIRVIE-------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 371 d~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
+..+++. .+. .+...|.++...++|++.+++.. .|..|+..+.+..
T Consensus 523 ~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 523 KQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDKQIK 575 (795)
T ss_dssp EEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTTEEE
T ss_pred eCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCCcEE
Confidence 8877654 222 12357899999999986665542 6888888766543
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=7.7e-10 Score=102.21 Aligned_cols=296 Identities=11% Similarity=0.114 Sum_probs=169.4
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeee
Q 009266 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (538)
Q Consensus 66 ~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 145 (538)
++.+..++. |..++.++.|..|+ .+++.+..+ ..+...+.++...+ ++. |+.++.+ |..++. +++....
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~--~g~-l~v~t~~--l~~~d~-~g~~~~~-- 92 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGK--DGT-IYFGSDK--VYAINP-DGTEKWR-- 92 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETT--TTE-ECCSSCE--EEEECC-CGGGGGG--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEec--CCc-EEEecCc--EEEECC-CCcEEEE--
Confidence 344545564 55667778899999 888876654 33334456666654 554 5555544 888885 4444332
Q ss_pred ccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC
Q 009266 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (538)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 225 (538)
+...........+. ++ .|+.++.++.|..++.. ++....+.... ..+.++...++ +. |+.++.+
T Consensus 93 ~~~~~~~~~~~~~~-~~--~l~v~t~~~~l~~~d~~-g~~~~~~~~~~----------~~~~~~~~~~~-g~-l~vgt~~ 156 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF-ED--ILYVTSMDGHLYAINTD-GTEKWRFKTKK----------AIYATPIVSED-GT-IYVGSND 156 (330)
T ss_dssp SCC-----CCEEEE-TT--EEEEECTTSEEEEECTT-SCEEEEEECSS----------CCCSCCEECTT-SC-EEEECTT
T ss_pred EECCCCcccCceEE-CC--EEEEEecCCEEEEEcCC-CCEEEEEcCCC----------ceeeeeEEcCC-CE-EEEEcCC
Confidence 22222222233333 33 57788888999999988 76655544221 13455666765 44 6667788
Q ss_pred CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccc
Q 009266 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (538)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 305 (538)
+.|..|+.. ++...... .....+.++.+.+++.++++. +.|+.|+ .++.
T Consensus 157 ~~l~~~d~~-g~~~~~~~---------------~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~------------ 205 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFK---------------TNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT------------ 205 (330)
T ss_dssp SEEEEECTT-SCEEEEEE---------------CSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC------------
T ss_pred CEEEEECCC-CCEeEEEe---------------cCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc------------
Confidence 999999987 54321111 012245556677788766655 8899998 4421
Q ss_pred cccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCc
Q 009266 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~ 385 (538)
....+..... .+.++.. .++|. |..++.++.|..++ .+++.+..+....
T Consensus 206 --------------------------~~~~~~~~~~--~~~~~~~-~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~ 254 (330)
T 3hxj_A 206 --------------------------EKWNFYAGYW--TVTRPAI-SEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGK 254 (330)
T ss_dssp --------------------------EEEEECCSSC--CCSCCEE-CTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSS
T ss_pred --------------------------EEEEEccCCc--ceeceEE-CCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCC
Confidence 1111111112 2566666 77775 44556677888887 4666666666554
Q ss_pred ceeeEEeecCCCCeEEEeecCCceEEecCCCCcccccCccceeeeecc--cCceeeeccCCCCCceee
Q 009266 386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVLIPD--HIRWFALGDDDDGDYYFY 451 (538)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~ 451 (538)
..+..+.+.+++. |..++.+|.|..++...............+..+. .++.|..++.+|..+...
T Consensus 255 ~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 255 RIESSPVIGNTDT-IYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALF 321 (330)
T ss_dssp CCCSCCEECTTSC-EEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred CccccceEcCCCe-EEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEe
Confidence 4455666665554 5667778889999964322222211112222222 455777777777665543
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.10 E-value=3.1e-08 Score=97.93 Aligned_cols=163 Identities=12% Similarity=0.075 Sum_probs=96.2
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCC-C--CCeEE-EEEeecCCCceEEEEeC------CCcEEEeecccCceee
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGH-N--DNVFQ-AKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVE 142 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~-~--~~v~~-l~~~~~~~~~~l~s~~~------dg~v~vwd~~~~~~~~ 142 (538)
+..|+.++.++.|..+|..+|+.+.++.... . ..+.+ ... . ++ .+++++. ++.|..+|..+++.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-A--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-E--CC-EEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 5577788889999999999999887653221 1 01211 111 1 44 4555544 7899999999988775
Q ss_pred eeeccccC-----------------------------------C-CcEEEEEcCCCCcEEEEEcCC--------------
Q 009266 143 TKLLGKHQ-----------------------------------G-RAHKLAIEPGSPHVFYTCGED-------------- 172 (538)
Q Consensus 143 ~~~~~~~~-----------------------------------~-~v~~~~~~~~~~~~l~s~~~d-------------- 172 (538)
........ . ....+++.+.. .+++.+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCce
Confidence 53322111 0 00235566655 355555432
Q ss_pred --CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC---cEEEEEeCCCeEEEEEcCCccccCCC
Q 009266 173 --GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGST 242 (538)
Q Consensus 173 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (538)
+.|..+|..+++.+..++..............++. +...++ + .+++.++.+|.|+++|..+++++...
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVN-GKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEET-TEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccC-CcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 35999999999988877643211000000111121 222234 4 36778889999999999998865443
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.08 E-value=6.4e-08 Score=95.49 Aligned_cols=215 Identities=10% Similarity=0.024 Sum_probs=119.0
Q ss_pred CceEEeecc-CCceEEeee-ccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCE----EEEecCCC
Q 009266 10 NKRARTSVD-KALVDVWLR-ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI----LISGSDDR 83 (538)
Q Consensus 10 ~~~l~t~~~-d~~v~iwd~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~----l~t~~~d~ 83 (538)
+.+|++++. ++.|.-+|. .+|+.+-+......... ..... .......++++|.+.. |+.++.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~---------~~~~~-~~~~~~g~av~p~~g~~~~rV~v~t~dg 131 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAA---------RAVAC-CDLVNRGLAYWPGDGKTPALILKTQLDG 131 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG---------GGGCS-SCSCCCCCEEECCCSSSCCEEEEECTTS
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccc---------ccccc-ccccccceEEEecCCcceeEEEEEcCCC
Confidence 345666666 788888888 78887522110000000 00000 0000122455443333 77788899
Q ss_pred eEEEEECCCCceeeeeccCC-C--CCeEE-EEEeecCCCceEEEEe------CCCcEEEeecccCceeeeeeccccCC--
Q 009266 84 RVILWDWKTERVKLSFHSGH-N--DNVFQ-AKIMPFTDDRSIVTCA------ADGQVRHAQILERGGVETKLLGKHQG-- 151 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~-~--~~v~~-l~~~~~~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~~~-- 151 (538)
.|..+|..+|+.+.+..... . ..+.+ ..+ . ++ .|++++ .+|.|+.+|..+++.+..........
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~ 207 (599)
T 1w6s_A 132 NVAALNAETGETVWKVENSDIKVGSTLTIAPYV-V--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL 207 (599)
T ss_dssp EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred EEEEEECCCCCEEEeecCCCCCccceeecCCEE-E--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc
Confidence 99999999999887653221 0 01211 112 1 44 455554 37899999999998765533221110
Q ss_pred ---------------------------------Cc-EEEEEcCCCCcEEEEEcCC----------------CcEEEEecC
Q 009266 152 ---------------------------------RA-HKLAIEPGSPHVFYTCGED----------------GLVQHFDLR 181 (538)
Q Consensus 152 ---------------------------------~v-~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~ 181 (538)
.+ ..+++.+.. .+++.+..+ +.|..+|+.
T Consensus 208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~ 286 (599)
T 1w6s_A 208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD 286 (599)
T ss_dssp TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred ccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence 00 134555665 466666554 379999999
Q ss_pred CCCeeeeeeecccCCCCCcceeeeeEEEEEc-CCCC---cEEEEEeCCCeEEEEEcCCccccCC
Q 009266 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA---NLFAVAGSDEYTRLYDIRKYKWDGS 241 (538)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (538)
+++.+..++........-.....++. +... .+ + ..++.++.+|.|+++|..+++++..
T Consensus 287 TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 287 TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKD-GKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTT-SCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCceeeEeecCCCccccccCCCccEE-EeccccC-CcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 99998877654321100000011111 2222 33 4 5677789999999999999887544
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=4e-08 Score=85.38 Aligned_cols=202 Identities=10% Similarity=0.036 Sum_probs=135.1
Q ss_pred CCCCceEEeecc--CCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCe
Q 009266 7 NNNNKRARTSVD--KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (538)
Q Consensus 7 ~~~~~~l~t~~~--d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~ 84 (538)
.|++.+.++.+. .+.|++.|+.+|+.+++ ..+..+. ....+++.. +++.++.-.++.
T Consensus 29 ~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~-------------------i~l~~~~-fgeGi~~~g-~~lyv~t~~~~~ 87 (266)
T 2iwa_A 29 AENDTLFESTGLYGRSSVRQVALQTGKVENI-------------------HKMDDSY-FGEGLTLLN-EKLYQVVWLKNI 87 (266)
T ss_dssp CSTTEEEEEECSTTTCEEEEEETTTCCEEEE-------------------EECCTTC-CEEEEEEET-TEEEEEETTCSE
T ss_pred eCCCeEEEECCCCCCCEEEEEECCCCCEEEE-------------------EecCCCc-ceEEEEEeC-CEEEEEEecCCE
Confidence 455544444332 68999999999998632 1122221 223455552 334445556789
Q ss_pred EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC---CCcEEEEEcCC
Q 009266 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIEPG 161 (538)
Q Consensus 85 i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~ 161 (538)
|.++|..+++.+.++..+ .. ....+++ +++.|+++...+.|.++|..+.+.+.......+. ..++.+.|. +
T Consensus 88 v~viD~~t~~v~~~i~~g-~~--~g~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQ-MK--DGWGLAT--DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp EEEEETTTTEEEEEEECC-SS--SCCEEEE--CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEECCCCcEEEEEECC-CC--CeEEEEE--CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 999999999988887433 11 1244667 8888888878899999999988776654443222 236678888 5
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCC---CCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
+ .+++.....+.|.+.|+.+++.+..+....... ..........+.|+|+|++.++++++...++|...++...
T Consensus 162 g-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 162 G-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp T-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred C-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 6 666777678899999999999988887532100 0000011256899999987678888888899999998764
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.06 E-value=2.9e-07 Score=84.44 Aligned_cols=104 Identities=9% Similarity=0.076 Sum_probs=63.8
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecc-------------------CCCCCeEEEEEeecCCCceEE
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS-------------------GHNDNVFQAKIMPFTDDRSIV 122 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~-------------------~~~~~v~~l~~~~~~~~~~l~ 122 (538)
....+++|.++|++|.++..++.|..|+..++... .+.. .....+..|++.+ +...|+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--~~g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--QNNQLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--TTTEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--CCCcEE
Confidence 45677899999987788888899999998765432 2210 0113578899986 455666
Q ss_pred EEeCCCcEEEeecccCceeee-eecc-ccCCCcEEEEEcC-CCCcEEEEE
Q 009266 123 TCAADGQVRHAQILERGGVET-KLLG-KHQGRAHKLAIEP-GSPHVFYTC 169 (538)
Q Consensus 123 s~~~dg~v~vwd~~~~~~~~~-~~~~-~~~~~v~~~~~~~-~~~~~l~s~ 169 (538)
.+...+.|..++..++..... .... ........+++.+ ++ +++++-
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d 144 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTD 144 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEE
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEEC
Confidence 665556688888764432111 0011 1123467788888 77 455543
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.04 E-value=1.4e-07 Score=80.76 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=139.9
Q ss_pred EEeeeeeEEcCCcC--cEEEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE
Q 009266 49 LRLGIYAKLDKHRG--CVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (538)
Q Consensus 49 ~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~t~~~d~--~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~ 124 (538)
..+++++++. |.. ....|.|+ ++.++.+.+.+| .|+++|+.+++.+.++.. ..........+ .+..|+..
T Consensus 29 ~~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~--~g~~ly~l 102 (262)
T 3nol_A 29 YDYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISD--WKDKIVGL 102 (262)
T ss_dssp EEEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEE--ETTEEEEE
T ss_pred cceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEE--eCCEEEEE
Confidence 3456667774 543 35889998 677777777766 899999999999887732 23444444444 44555554
Q ss_pred e-CCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 125 A-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 125 ~-~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
. .++.+.++|..+.+.+......+. ...+.+++..++++ ...+.|.++|..+.+.+..+....... ..
T Consensus 103 tw~~~~v~v~D~~t~~~~~ti~~~~e-----G~glt~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~-----~~ 171 (262)
T 3nol_A 103 TWKNGLGFVWNIRNLRQVRSFNYDGE-----GWGLTHNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGE-----EL 171 (262)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSSC-----CCCEEECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTE-----EC
T ss_pred EeeCCEEEEEECccCcEEEEEECCCC-----ceEEecCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCc-----cc
Confidence 4 588999999999888776544332 22333566444444 447889999999999888776532100 11
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCe
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 283 (538)
..++.+.|. + +.+++..-....|.+.|..+++....+.+......... ........+.|||+|+++.|.+.+..-
T Consensus 172 ~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~---~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 172 PELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP---LPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp CCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS---CCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred cccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc---ccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 234557776 3 67776666788999999999988776655322111000 111234679999999887777666553
Q ss_pred EEEee
Q 009266 284 IYLFT 288 (538)
Q Consensus 284 i~~~d 288 (538)
-++|.
T Consensus 247 p~~~e 251 (262)
T 3nol_A 247 PKVFE 251 (262)
T ss_dssp SEEEE
T ss_pred CceEE
Confidence 33333
No 247
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=1.8e-06 Score=89.66 Aligned_cols=293 Identities=9% Similarity=0.025 Sum_probs=172.9
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec-------------cCCCCCeEEEEEeecCCCceEEEEeCC
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-------------SGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~-------------~~~~~~v~~l~~~~~~~~~~l~s~~~d 127 (538)
...|.+|...++|.+.+ |+..+-|.+++..++....... ......|.+|...+ +| .|..|+.+
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g-~lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FN-NIWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SC-CEEEEEBS
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CC-CEEEEecC
Confidence 45799999988886554 5553458888987665321110 12345788888876 65 46667766
Q ss_pred CcEEEeecccCceeeeee-------ccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCc
Q 009266 128 GQVRHAQILERGGVETKL-------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (538)
+-|..++..+........ ..-....|.+++..+++ . |..|+.++-|.+|+..++..... .... .
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~-~~~~--~---- 403 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGINVFENGKRVAIYN-KENR--E---- 403 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCEEEEETTEEEEECC------------
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcEEEEECCCCeEEEc-cCCC--C----
Confidence 778888876543322110 01123568899888877 3 56666666788998775433221 1000 0
Q ss_pred ceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc
Q 009266 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (538)
Q Consensus 201 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (538)
.....|.+++..++ +. |..|+..+.|..|+..+++.... ... ......|.++...++|++.++..
T Consensus 404 ~~~~~v~~i~~d~~-g~-lWigt~~~Gl~~~~~~~~~~~~~----------~~~---~~~~~~v~~i~~d~~g~lwigt~ 468 (781)
T 3v9f_A 404 LLSNSVLCSLKDSE-GN-LWFGTYLGNISYYNTRLKKFQII----------ELE---KNELLDVRVFYEDKNKKIWIGTH 468 (781)
T ss_dssp CCCSBEEEEEECTT-SC-EEEEETTEEEEEECSSSCEEEEC----------CST---TTCCCCEEEEEECTTSEEEEEET
T ss_pred CCCcceEEEEECCC-CC-EEEEeccCCEEEEcCCCCcEEEe----------ccC---CCCCCeEEEEEECCCCCEEEEEC
Confidence 12346889988876 44 45567767788898876653211 000 11245789999999998777665
Q ss_pred CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEE
Q 009266 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (538)
Q Consensus 281 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~ 360 (538)
+.|.+|+..++....... .. ...+ ... .|.++.. .++|++.+.
T Consensus 469 -~Gl~~~~~~~~~~~~~~~------------------------------~~-~~~~--~~~--~i~~i~~-d~~g~lWig 511 (781)
T 3v9f_A 469 -AGVFVIDLASKKVIHHYD------------------------------TS-NSQL--LEN--FVRSIAQ-DSEGRFWIG 511 (781)
T ss_dssp -TEEEEEESSSSSCCEEEC------------------------------TT-TSSC--SCS--CEEEEEE-CTTCCEEEE
T ss_pred -CceEEEeCCCCeEEeccc------------------------------Cc-cccc--ccc--eeEEEEE-cCCCCEEEE
Confidence 779999876532110000 00 0000 011 3778877 888876554
Q ss_pred eccCCeEEEeeccCcceeEEeec----CcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccc
Q 009266 361 GSDCGRIFIWKKKGGELIRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (538)
Q Consensus 361 gs~dg~i~iwd~~~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 421 (538)
....| |..|+..+++.. .+.. ....|.++...++|++.++.. .|.|..|+..+++...
T Consensus 512 t~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~ 573 (781)
T 3v9f_A 512 TFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV 573 (781)
T ss_dssp ESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE
T ss_pred EcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE
Confidence 43344 777887665433 3321 234688999999988666554 5655889988765443
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.03 E-value=4.1e-09 Score=101.10 Aligned_cols=245 Identities=10% Similarity=0.025 Sum_probs=152.9
Q ss_pred CCCceEEeec-cCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEE-c-CCCCEEEEec----
Q 009266 8 NNNKRARTSV-DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSF-N-TDGDILISGS---- 80 (538)
Q Consensus 8 ~~~~~l~t~~-~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s-~~g~~l~t~~---- 80 (538)
+++++|+... .+++|.+-|+.+.++.+ ++ .+. ....+..+++ + |++++|++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~------------------ii-~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDA------------------IL-EIP-NAKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEE------------------EE-ECS-SCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEee------------------EE-eCC-CCCCCcceeeeecCCCcEEEEeccccc
Confidence 3566655544 45668888888777642 11 222 2345788888 5 8999998884
Q ss_pred --------------CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC------------------
Q 009266 81 --------------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG------------------ 128 (538)
Q Consensus 81 --------------~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg------------------ 128 (538)
.++.|.+.|..+.+...++..+. ....++++| +|+++++++.+.
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECC--CCCEEEEEecCcccCcchhhccccccceEE
Confidence 24579999999998888875432 456778999 999999888553
Q ss_pred --------------------cEEEeeccc--Cce-eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe
Q 009266 129 --------------------QVRHAQILE--RGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA 185 (538)
Q Consensus 129 --------------------~v~vwd~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 185 (538)
.|.|.|..+ ++. +.. +. -.....++.++|+|+++++++....+|.++|+.+.+.
T Consensus 235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~--Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~ 311 (595)
T 1fwx_A 235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY--IP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 311 (595)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEE--EE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred EeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEE--Ee-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence 356666655 222 111 11 1234568999999977777777889999999986531
Q ss_pred ------------eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcc--ccCCCCCCCCCccc
Q 009266 186 ------------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK--WDGSTDFGQPADYF 251 (538)
Q Consensus 186 ------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~ 251 (538)
...+. .......++|+|+ |+..++...+++|.+|++.... +.+.. . .++...
T Consensus 312 ~~~~~l~~~~~v~~~v~-----------vG~gP~h~aF~~d-G~aY~t~~ldsqV~kwdi~~a~~~~~g~~-~-~~vi~k 377 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPE-----------LGLGPLHTAFDGR-GNAYTSLFLDSQVVKWNIEDAIRAYAGEK-V-DPIKDK 377 (595)
T ss_dssp HHHSCCCGGGGEEECCB-----------CCSCEEEEEECTT-SEEEEEETTTTEEEEEEHHHHHHHHHTCS-C-CCEEEE
T ss_pred ccccccCcccceEEEcC-----------CCCCcceEEECCC-CeEEEEEecCCcEEEEEhhHhhhhhcccc-c-ceeEEE
Confidence 11111 1224688999998 5777778889999999997721 00000 0 000000
Q ss_pred CCCCccCCCccceEEEEEcCCCCEEEEEcC---CeE-----------EEeeccCCC
Q 009266 252 CPPNLIGDEQVGITGLAFSDQSELLVSYND---EFI-----------YLFTQDMGL 293 (538)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---~~i-----------~~~d~~~~~ 293 (538)
.......+|.....+++++|+|++|+++.. +++ .++++..++
T Consensus 378 idV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 378 LDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 001111111111223456899999998873 355 889985543
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.03 E-value=3.2e-07 Score=79.77 Aligned_cols=224 Identities=6% Similarity=-0.008 Sum_probs=140.5
Q ss_pred EeeeeeEEcCCcC--cEEEEEEcCCCCEEEEecC--CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEE-E
Q 009266 50 RLGIYAKLDKHRG--CVNTVSFNTDGDILISGSD--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-C 124 (538)
Q Consensus 50 ~~~~~~~~~~h~~--~v~~~~~s~~g~~l~t~~~--d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s-~ 124 (538)
..+.++++. |.. ....|+|+|++.+.++.+. .+.|+++|+.+++.+.++..+.......+++. +..|+. .
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~----g~~lyv~t 82 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL----NEKLYQVV 82 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE----TTEEEEEE
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe----CCEEEEEE
Confidence 344556664 553 3689999998765555543 57999999999998887632222222344443 445544 4
Q ss_pred eCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 125 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
-.++.+.++|..+.+.+...... ... ...+++++..++++ ..++.|.++|..+.+.+..+....... ...
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g-~~~---g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~-----p~~ 152 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQ-MKD---GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGH-----RVI 152 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECC-SSS---CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTE-----ECC
T ss_pred ecCCEEEEEECCCCcEEEEEECC-CCC---eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCc-----ccc
Confidence 46789999999988777664333 111 23455677555554 467899999999988887776432100 111
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CC
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DE 282 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~ 282 (538)
.++.+.|. + +.+++.....+.|.+.|..+++....+.++...... .............++|+|+++.|.+++ .+
T Consensus 153 ~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~--~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 153 RLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL--IDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp CEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH--HHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred cceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc--ccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 35677787 4 566666667889999999998876554332000000 000001123578999999987655554 45
Q ss_pred eEEEeeccCC
Q 009266 283 FIYLFTQDMG 292 (538)
Q Consensus 283 ~i~~~d~~~~ 292 (538)
++++.++...
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 8888887653
No 250
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.02 E-value=2.4e-07 Score=91.62 Aligned_cols=168 Identities=11% Similarity=0.062 Sum_probs=96.3
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCC-CC--CeE-EEEEee-cCCCc-eEEEEe------CCCcEEEeecccCce
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGH-ND--NVF-QAKIMP-FTDDR-SIVTCA------ADGQVRHAQILERGG 140 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~-~~--~v~-~l~~~~-~~~~~-~l~s~~------~dg~v~vwd~~~~~~ 140 (538)
+..|+.++.++.|..+|..+|+.+.++.... .. .+. ...... ..+++ .|++++ .++.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 4567778889999999999999887763221 10 111 111222 00122 566654 378999999998887
Q ss_pred eeeeeccc-c--------------------------------------CCCcEEEEEcCCCCcEEEEEcC----------
Q 009266 141 VETKLLGK-H--------------------------------------QGRAHKLAIEPGSPHVFYTCGE---------- 171 (538)
Q Consensus 141 ~~~~~~~~-~--------------------------------------~~~v~~~~~~~~~~~~l~s~~~---------- 171 (538)
+....... + ...-..+++.|.. .+++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGGGG
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCccc
Confidence 65432210 0 0000234566665 35554442
Q ss_pred ----------C----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc-CCCC--cEEEEEeCCCeEEEEEcC
Q 009266 172 ----------D----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA--NLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 172 ----------d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~l~~~~~dg~v~iwd~~ 234 (538)
+ +.|..+|+.+++.+..++..............++. +... .++. .+++.++.+|.|+++|..
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 58999999999998887643211100000011111 2221 3322 478889999999999999
Q ss_pred CccccCCC
Q 009266 235 KYKWDGST 242 (538)
Q Consensus 235 ~~~~~~~~ 242 (538)
+++++...
T Consensus 355 tG~~lw~~ 362 (582)
T 1flg_A 355 NGKLQNAF 362 (582)
T ss_dssp TCCEEEEE
T ss_pred CCCEeccc
Confidence 98876443
No 251
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=7.2e-06 Score=85.08 Aligned_cols=294 Identities=10% Similarity=0.059 Sum_probs=173.6
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecc------CCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~ 135 (538)
..|.+|...++|.+.+... . -|.+|+..+++...-... .....|.+|...+ +|. |..|+..+-|.+++.
T Consensus 211 ~~i~~i~~d~~g~lwigt~-~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTS-K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK--DNK-LWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEEEET-T-EEEEEETTTTEEEC-----------CCCCEEEEEECT--TSE-EEEEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEEEeC-C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC--CCC-EEEEeCCCCeEEECC
Confidence 5699999998887666543 4 589999876654321111 1235688888876 655 555666456788887
Q ss_pred ccCceeeeee------------ccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCccee
Q 009266 136 LERGGVETKL------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 136 ~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
.+........ ..-....|.++...+++ . |..|+.++-|..|+..+........ ............
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 362 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGGGINFISNAPPTFHTWSY-SPTQMNESSLSN 362 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSCEEEC-----CCCSSCCSS
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcceeecc-CccccccCCCCC
Confidence 6654322110 01134578999998888 3 5677767779999887655432211 000000000122
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCe
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 283 (538)
..|.+++..++ + .|..|+.++-|.+|+..+.+..... .. .......|.++...++|.+.+....+.
T Consensus 363 ~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~----------~~--~~~~~~~v~~i~~d~~g~lWigt~~~G 428 (781)
T 3v9f_A 363 KVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAIYNK----------EN--RELLSNSVLCSLKDSEGNLWFGTYLGN 428 (781)
T ss_dssp SCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEEEETTEE
T ss_pred cceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEEEcc----------CC--CCCCCcceEEEEECCCCCEEEEeccCC
Confidence 36899998886 4 4556676677889998765432110 00 011245799999999998877665678
Q ss_pred EEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeec-cccceeeeEEEEecCCCcEEEEec
Q 009266 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGS 362 (538)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~~gs 362 (538)
|..|+..++.. ..+.. ......|.++.. .++|++.+. +
T Consensus 429 l~~~~~~~~~~---------------------------------------~~~~~~~~~~~~v~~i~~-d~~g~lwig-t 467 (781)
T 3v9f_A 429 ISYYNTRLKKF---------------------------------------QIIELEKNELLDVRVFYE-DKNKKIWIG-T 467 (781)
T ss_dssp EEEECSSSCEE---------------------------------------EECCSTTTCCCCEEEEEE-CTTSEEEEE-E
T ss_pred EEEEcCCCCcE---------------------------------------EEeccCCCCCCeEEEEEE-CCCCCEEEE-E
Confidence 99998765311 01100 001113778877 777765554 4
Q ss_pred cCCeEEEeeccCcceeEEeecC-----cceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 363 DCGRIFIWKKKGGELIRVIEAD-----RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
. +-|.+|+..+++........ ...|.++...++|++.+... .+.|..|+..+++..
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~~Gl~~~~~~~~~~~ 528 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-GGGVGIYTPDMQLVR 528 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-SSCEEEECTTCCEEE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-CCCEEEEeCCCCeEE
Confidence 4 56888998776654332222 35789999999888665443 344777888766543
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.99 E-value=4.8e-07 Score=80.43 Aligned_cols=199 Identities=6% Similarity=-0.018 Sum_probs=121.9
Q ss_pred CcEEEEEEcCCCCE-EEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE-eCCCcEEEeecccCc
Q 009266 62 GCVNTVSFNTDGDI-LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERG 139 (538)
Q Consensus 62 ~~v~~~~~s~~g~~-l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~-~~dg~v~vwd~~~~~ 139 (538)
..+.+++|+|++.. +++-...+.|..+++..+.. ..+..........|++.| .+..|+.+ ...+.|.++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~p~~ia~d~--~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLGSPEGIALDH--LGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCCCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCCCccEEEEEe--cCCeEEEEECCCCEEEEEEcCCCC
Confidence 45789999996554 45555678999999876543 333233335678999998 76655554 456789999886433
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcC--CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE--DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
.... ..........+++.|++.+++++... .+.|..+++.... ...+... .......++++|+++.
T Consensus 113 ~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~---------~~~~P~gia~d~~~~~ 180 (267)
T 1npe_A 113 RRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQD---------NLGLPNGLTFDAFSSQ 180 (267)
T ss_dssp CEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECT---------TCSCEEEEEEETTTTE
T ss_pred EEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEEC---------CCCCCcEEEEcCCCCE
Confidence 2211 22222457899999966455555543 4688888876432 2222111 1124678999997566
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
++++-...+.|.++++........ .. .......+++. .+.++++.. .+.|.+++..++
T Consensus 181 lyv~d~~~~~I~~~~~~g~~~~~~---------------~~-~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 181 LCWVDAGTHRAECLNPAQPGRRKV---------------LE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EEEEETTTTEEEEEETTEEEEEEE---------------EE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred EEEEECCCCEEEEEecCCCceEEE---------------ec-CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 667777778999999875432100 00 11233566665 344444443 458999998764
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=9.6e-08 Score=96.48 Aligned_cols=328 Identities=11% Similarity=0.085 Sum_probs=173.6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCC---------Ce-EEEEEeecCCCceEEEEeCCCcEEEeecccCceee
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHND---------NV-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~---------~v-~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 142 (538)
+..|+.++.++.|..+|..+|+.+.++...... .+ ..+++ .+..|++++.++.|..+|..+++.+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 456666777889999999999988776321110 01 12233 34578888889999999999998876
Q ss_pred eeeccccC--CCcEE-EEEcCCCCcEEEEEcC------CCcEEEEecCCCCeeeeeeecccCCCCCc-------------
Q 009266 143 TKLLGKHQ--GRAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNY------------- 200 (538)
Q Consensus 143 ~~~~~~~~--~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------- 200 (538)
........ ..+.+ ..+. ++ .++++.. +|.|+.+|.++++.+..+...........
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~-~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVV-KG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEE-TT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeccCCCCCcceecCCCEEE-CC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 64442111 11111 1111 33 3444432 58999999999999888764221100000
Q ss_pred --------ceeeeeEEEEEcCCCCcEEEEEeCCC-------------------eEEEEEcCCccccCCCCCCCCCcccCC
Q 009266 201 --------MTVVNLNAIAIDPRNANLFAVAGSDE-------------------YTRLYDIRKYKWDGSTDFGQPADYFCP 253 (538)
Q Consensus 201 --------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~ 253 (538)
........+++.|. ..+++.++.++ .|..+|..+++..-........
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~----- 292 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD----- 292 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC-----
T ss_pred ccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCc-----
Confidence 01111235788887 46777777665 3889999988764432221000
Q ss_pred CCccCCCccceEEEEEcCCCC---EEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCc
Q 009266 254 PNLIGDEQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (538)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
........++....+..+|+ +|+.++ ++.++++|..+++.+...+..+.. +........ +..+...... . .
T Consensus 293 -~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~~~-g~p~~~~~~~-~-~ 367 (668)
T 1kv9_A 293 -SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDLAT-GRPVEAPGVR-Y-E 367 (668)
T ss_dssp -CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECTTT-CCEEECTTTT-C-S
T ss_pred -cccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccccc-CCcccccccc-c-c
Confidence 00000012222223333565 456655 679999999988765332222110 000000000 0000000000 0 0
Q ss_pred ccCCceeeccccceeeeEEEEecCCCcEEEE------------------------------------eccCCeEEEeecc
Q 009266 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS------------------------------------GSDCGRIFIWKKK 373 (538)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~------------------------------------gs~dg~i~iwd~~ 373 (538)
......+.+......-..+++ +|+..+++. ...+|.|+.||+.
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~-dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSF-NPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEE-ETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred CCeeEECCCCccccCCCcceE-CCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 000000000000000111233 444333322 2235889999999
Q ss_pred CcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
+++.+-+.+.+. ++....+...+.+|+.++.++.|++|+..+++..
T Consensus 447 tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 447 KQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp TTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 999887766433 3344455557888999999999999999988763
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.94 E-value=6e-06 Score=74.92 Aligned_cols=123 Identities=8% Similarity=0.010 Sum_probs=76.6
Q ss_pred eeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC--cE
Q 009266 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QV 130 (538)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg--~v 130 (538)
.+..+..+ .....++|+|+|+++++-...+.|..|+... +....+ .....+..|++.+ +++++++..... .|
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~--~~~~~p~gia~~~--dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA--TVEGKVSGLAFTS--NGDLVATGWNADSIPV 97 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE--ECSSEEEEEEECT--TSCEEEEEECTTSCEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEE--eCCCCceeEEEcC--CCcEEEEeccCCcceE
Confidence 34455432 5678999999999888877889999999765 333322 1234688999999 888666554332 36
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (538)
..++..+++......+. .......++..+.+ .++++-...+.|.+++..++
T Consensus 98 ~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEECTTSCEEEEEECT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTT
T ss_pred EEEcCCCCeEEEEEeCC-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCC
Confidence 66666666543322221 22233455555544 45555556788888887654
No 255
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.92 E-value=7.2e-07 Score=77.07 Aligned_cols=221 Identities=7% Similarity=0.121 Sum_probs=138.1
Q ss_pred eEEcCCcCcEEEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 55 AKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~g~~l-~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
+.+.+-...+..|+|+|++..| ++...++.|...++. ++.+.++...-....-.|++.+ ++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~--~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG--DNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS--TTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC--CCEEEEEECCCCcEEEE
Confidence 4566666789999999976655 456678889999987 8877776333345788889988 88777776667889998
Q ss_pred ecccCce---eeeeec----cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC---CCeeeeeeecccCCCCCccee
Q 009266 134 QILERGG---VETKLL----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNYMTV 203 (538)
Q Consensus 134 d~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 203 (538)
.+..... +....+ .......-.|+|.|.+. .|+++.......||.+.. ...+..+..... .+....
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~---~~~~~~ 172 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL---QRQFTL 172 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEECHHH---HHTCCS
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecchhh---cccccc
Confidence 8765442 121111 12345578999999884 455555544455555441 111121111000 000012
Q ss_pred eeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCe
Q 009266 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (538)
Q Consensus 204 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 283 (538)
..+.+++++|..+++++.......|.++|.... ......+.... .-......+...|+|.++|++.+++-.+.
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~------~~l~~~~~qpEGia~d~~G~lyIvsE~n~ 245 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGS------RGLSHNIKQAEGVAMDASGNIYIVSEPNR 245 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTG------GGCSSCCCSEEEEEECTTCCEEEEETTTE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCcc------CCcccccCCCCeeEECCCCCEEEEcCCce
Confidence 257899999998888888888899999997643 22221111000 00011134678999999999777766667
Q ss_pred EEEeec
Q 009266 284 IYLFTQ 289 (538)
Q Consensus 284 i~~~d~ 289 (538)
+++|..
T Consensus 246 ~y~f~~ 251 (255)
T 3qqz_A 246 FYRFTP 251 (255)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 777754
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.90 E-value=2.9e-07 Score=78.88 Aligned_cols=185 Identities=15% Similarity=0.094 Sum_probs=120.5
Q ss_pred CCceEEeeccCC--ceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEE-EecCCCeE
Q 009266 9 NNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI-SGSDDRRV 85 (538)
Q Consensus 9 ~~~~l~t~~~d~--~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-t~~~d~~i 85 (538)
++.+..+.+..| .|+++|+.+|+.+++ ..+. .........+.+..|. ..-.++.+
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~-------------------~~l~---~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQ-------------------IELG---KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEE-------------------EECC---TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEE-------------------EecC---CccceeEEEEeCCEEEEEEeeCCEE
Confidence 355556666555 899999999998732 1111 2222222222344444 34457899
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC---CCcEEEEEcCCC
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIEPGS 162 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 162 (538)
.+||..+.+.+.++..+. ....+++ ++..|+.+...+.|.++|..+.+.+......... ..++.+.|. ++
T Consensus 110 ~v~D~~t~~~~~ti~~~~----eG~glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G 182 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG----EGWGLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG 182 (262)
T ss_dssp EEEETTTCCEEEEEECSS----CCCCEEE--CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEECccCcEEEEEECCC----CceEEec--CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence 999999999988884322 2234445 7888888777889999999988776664443222 334557776 56
Q ss_pred CcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCC--CcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
.+++..-....|.+.|.++++.+..+......... ........+.|||+|++.+++++|-
T Consensus 183 -~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 183 -EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred -EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 66676767889999999999999888765332211 1112235689999998555666553
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.90 E-value=2.4e-07 Score=79.29 Aligned_cols=184 Identities=9% Similarity=0.002 Sum_probs=123.8
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~ 89 (538)
+.+.++.+.+|.|+++|+.+|+.+++ + +..+. .--.+++.. +++.+..-.++.+.+||
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~------------------~--l~~~~-FgeGit~~g-~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWM------------------E--RLGNI-FAEGLASDG-ERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEE------------------E--ECTTC-CEEEEEECS-SCEEEEESSSCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeE------------------E--CCCCc-ceeEEEEeC-CEEEEEEccCCEEEEEE
Confidence 55677777888999999999998732 1 22211 112355543 34444455688999999
Q ss_pred CCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCC---CcEEEEEcCCCCcEE
Q 009266 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPHVF 166 (538)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l 166 (538)
..+.+.+.++... ..-..++ + +++.|+.+...+.|.++|..+.+.+.......+.. .++.+.|. +| .++
T Consensus 123 ~~Tl~~~~ti~~~--~eGwGLt--~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~ly 194 (268)
T 3nok_A 123 GMPPQRERTTRYS--GEGWGLC--Y--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIY 194 (268)
T ss_dssp TTTTEEEEEEECS--SCCCCEE--E--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred CCcCcEEEEEeCC--CceeEEe--c--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEE
Confidence 9999998888432 2223444 5 77888887788999999999888776644443333 34567776 56 566
Q ss_pred EEEcCCCcEEEEecCCCCeeeeeeecccCCCC---CcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRR---NYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
+.......|.+.|.++++.+..+......... ......-.+.|||+|++.+++++|-
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 66667889999999999998888754321100 0112235789999998667777763
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=2.3e-07 Score=91.64 Aligned_cols=331 Identities=12% Similarity=0.054 Sum_probs=168.2
Q ss_pred CCEEEEecC-CCeEEEEEC-CCCceeeeeccCCCCCe----------EEEEEeecCCCceEEEEeCCCcEEEeecccCce
Q 009266 73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHNDNV----------FQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (538)
Q Consensus 73 g~~l~t~~~-d~~i~iw~~-~~~~~~~~~~~~~~~~v----------~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 140 (538)
+..|..++. ++.|.-+|. .+|+.+.++.......+ ..+++ .+..|+.++.++.|..+|..+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence 445666666 788999999 89998877632211110 12233 356788888899999999999988
Q ss_pred eeeeeccccCC--CcEE-EEEcCCCCcEEEEEcC------CCcEEEEecCCCCeeeeeeecccCC---------------
Q 009266 141 VETKLLGKHQG--RAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDD--------------- 196 (538)
Q Consensus 141 ~~~~~~~~~~~--~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~--------------- 196 (538)
+....+..+.. .+.+ ..+. ++ .+++++. ++.|+.+|.++++.+..+.......
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVA-KD--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE-TT--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEecCCCCCccceeccCCEEE-CC--EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 76654443211 1111 1111 33 3455544 7899999999999988776432110
Q ss_pred ---------CC----CcceeeeeEEEEEcCCCCcEEEEEeCC----------------CeEEEEEcCCccccCCCCCCCC
Q 009266 197 ---------RR----NYMTVVNLNAIAIDPRNANLFAVAGSD----------------EYTRLYDIRKYKWDGSTDFGQP 247 (538)
Q Consensus 197 ---------~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d----------------g~v~iwd~~~~~~~~~~~~~~~ 247 (538)
.. .+........+++.+.. .+++.++.+ +.|..+|..+++..-..+....
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~ 293 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH 293 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence 00 00000011235667753 455555432 3588899988875433221100
Q ss_pred CcccCCCCccCCCccceEEEEEcCCCC---EEEEEc-CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 009266 248 ADYFCPPNLIGDEQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (538)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (538)
. ..-......++. +...++|+ +++.++ ++.++++|..+++.....+..+...+........ ++.+....
T Consensus 294 d-----~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~-g~p~~~~~ 366 (571)
T 2ad6_A 294 D-----EWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKT-GTPVRDPE 366 (571)
T ss_dssp C-----SSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTT-CSEEECGG
T ss_pred c-----ccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccC-Cceecccc
Confidence 0 000000112221 22234674 455555 6689999998886554432211000000000000 00000000
Q ss_pred CCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEec-------------------------------------cCCe
Q 009266 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-------------------------------------DCGR 366 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs-------------------------------------~dg~ 366 (538)
..............+......-..++| +|+..+|++.+ ..|.
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~-dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~ 445 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSY-DPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQ 445 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEE-ETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceE-CCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCe
Confidence 000000000000000000000123344 55554444432 3588
Q ss_pred EEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
|+.||+.+++.+-++... ..+.+..+...+.+|+.++.+|.|++|+..+++..
T Consensus 446 l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 446 IRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 999999999988776533 23333334445667777999999999999988764
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.87 E-value=1.6e-05 Score=73.46 Aligned_cols=256 Identities=9% Similarity=0.006 Sum_probs=153.5
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE-eCCCcEEEeecccCce
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGG 140 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~-~~dg~v~vwd~~~~~~ 140 (538)
...+|.+..+.+ +|+.+.. ..|+..++...... .+.. ....+..|+|.+ ....|+.+ ...+.|..+++.....
T Consensus 34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~-~~~~-~~~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYT-LLLN-NLENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEE-EEEC-SCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcccccccCc-eeEeecc-cceEEEeCCCCeeE-Eeec-CCCceEEEEEec--cccEEEEEeccCCceEEEecCCCCc
Confidence 445677766644 4544433 45888887655443 3322 334588999997 55555544 4678898898876543
Q ss_pred eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
... +.........+++.+.+.+++++-...+.|.+.++........+. . .......++++|.++.+++
T Consensus 108 ~~~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~---------~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 108 EEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-Q---------SLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp EEE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-T---------TCSCEEEEEEETTTTEEEE
T ss_pred eEE--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-C---------CCCCcceEEEecCcCeEEE
Confidence 222 222334567899998665677777778899999987554332221 1 1124588999997666777
Q ss_pred EEeCC-CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCC
Q 009266 221 VAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNP 297 (538)
Q Consensus 221 ~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~ 297 (538)
+-... +.|..+++..... ..+..........|+++|.+..|..+. .+.|..+++....
T Consensus 176 td~~~~~~I~r~~~dG~~~---------------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~---- 236 (349)
T 3v64_C 176 TDWGNTPRIEASSMDGSGR---------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---- 236 (349)
T ss_dssp EECSSSCEEEEEETTSCSC---------------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----
T ss_pred eccCCCCEEEEEeCCCCCc---------------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc----
Confidence 66665 7888888764321 111111234578999998766665554 4479988876421
Q ss_pred CCCCCccccccccccCCCCccccCCCCCCCCcccCCcee-eccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
.+.+ ..... ....+++ . .+.++++-...+.|..++..+|+
T Consensus 237 -----------------------------------~~~~~~~~~~--~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 237 -----------------------------------RKAVISQGLP--HPFAITV-F-EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp -----------------------------------CEEEECSSCS--SEEEEEE-E-TTEEEEEETTTTEEEEEETTTCC
T ss_pred -----------------------------------eEEEEeCCCC--CceEEEE-E-CCEEEEecCCCCeEEEEEccCCC
Confidence 1111 11111 1456665 2 45566666677889888877787
Q ss_pred eeEEeecCcceeeEEee
Q 009266 377 LIRVIEADRHVVNCIEP 393 (538)
Q Consensus 377 ~~~~~~~h~~~v~~~~~ 393 (538)
.+..+......+..+++
T Consensus 278 ~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 278 NQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp SCEEEECSCSCCCCEEE
T ss_pred ccEEeccCCCCCceEEE
Confidence 77766543333444443
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.85 E-value=2.2e-06 Score=72.80 Aligned_cols=216 Identities=13% Similarity=0.076 Sum_probs=135.5
Q ss_pred eeeeEEcCCc--CcEEEEEEcCCCCEEEEecCC--CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceE-EEEeC
Q 009266 52 GIYAKLDKHR--GCVNTVSFNTDGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAA 126 (538)
Q Consensus 52 ~~~~~~~~h~--~~v~~~~~s~~g~~l~t~~~d--~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~ 126 (538)
++++.+ .|. .....|.|++ +.+..+.+.. ..|+.+|+.+++.+.++... .........+ .+..| +..-.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~--~~~~ly~ltw~ 83 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP--PPYFGAGIVA--WRDRLIQLTWR 83 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--TTCCEEEEEE--ETTEEEEEESS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--CCcceeEEEE--eCCEEEEEEee
Confidence 455566 454 4577999987 6666666665 48999999999998776322 2333333344 33444 44456
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (538)
++.+.++|..+.+.+......++ -..++ +++..++++ ..++.|.++|..+.+.+..+....... ....+
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~---Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~-----~~~~l 152 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGE---GWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGR-----PLDNL 152 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSC---CCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTE-----ECCCE
T ss_pred CCEEEEEECCcCcEEEEEeCCCC---ceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCc-----ccccc
Confidence 89999999999888776544432 23444 456455555 457899999999998888776532100 11235
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEE
Q 009266 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (538)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~ 286 (538)
+-+.+.. +.+++..-....|.+.|.++++....+.++....... ..........+.||++|+++.|.+.+..--++
T Consensus 153 NeLe~~~--G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~--~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~ 228 (243)
T 3mbr_X 153 NELEWVN--GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDAD--ALTDSTNDVLNGIAFDAEHDRLFVTGKRWPML 228 (243)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTT--SCCCTTSSCEEEEEEETTTTEEEEEETTCSEE
T ss_pred eeeEEeC--CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccc--cccCCcCCceEEEEEcCCCCEEEEECCCCCcE
Confidence 5666663 6666666678899999999998876655432111000 00011234679999999877666666443333
Q ss_pred ee
Q 009266 287 FT 288 (538)
Q Consensus 287 ~d 288 (538)
|.
T Consensus 229 ~~ 230 (243)
T 3mbr_X 229 YE 230 (243)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.84 E-value=8.7e-07 Score=75.89 Aligned_cols=209 Identities=10% Similarity=0.040 Sum_probs=133.4
Q ss_pred eeeeEEcCCc--CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEE-EeCCC
Q 009266 52 GIYAKLDKHR--GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADG 128 (538)
Q Consensus 52 ~~~~~~~~h~--~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s-~~~dg 128 (538)
++++++ .|. .....|.|+. +.+.++.+.+|.|+++|+.+++.+.++ .. .........+ .+..|+. .-.++
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~FgeGit~--~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFAEGLAS--DGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCEEEEEE--CSSCEEEEESSSC
T ss_pred EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcceeEEEE--eCCEEEEEEccCC
Confidence 455666 354 3457899984 667778888899999999999988777 22 2344433344 4444444 44689
Q ss_pred cEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEE
Q 009266 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 129 ~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
.+.++|..+.+.+......+. -..++ +++. .|+.+...+.|.++|..+.+.+..+....... ....++-
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~e---GwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-----~v~~lNe 185 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGE---GWGLC--YWNG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-----PVELINE 185 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSC---CCCEE--EETT-EEEEECSSSEEEEECTTTCCEEEEEECEETTE-----ECCCEEE
T ss_pred EEEEEECCcCcEEEEEeCCCc---eeEEe--cCCC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-----ccccccc
Confidence 999999999888876544322 22333 5564 45555568899999999999888776533110 1113566
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCC
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (538)
+.|. + +.+++..-....|.+.|..+++....+.++...... . ........-.+.||++|+++.|.+.+..
T Consensus 186 Le~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~-~-~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 186 LECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV-A-GQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH-T-TTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred cEEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc-c-ccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 7777 3 666666667889999999999877665543111000 0 0011123467899999987655555543
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.84 E-value=3e-07 Score=93.11 Aligned_cols=244 Identities=10% Similarity=0.047 Sum_probs=132.7
Q ss_pred CCceEEeeccCC-----------ceEEeeeccCceeccccchhhcccccceEEeeeeeEE-cCCcCcEEEEEEcCCCCEE
Q 009266 9 NNKRARTSVDKA-----------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDIL 76 (538)
Q Consensus 9 ~~~~l~t~~~d~-----------~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l 76 (538)
++++++.|+.+. .+.+||..+++... +..+ ..+.....++++.++++++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-------------------~~~~~~~~~~~~~~~~~~~~g~ly 257 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-------------------RTVTVTKHDMFCPGISMDGNGQIV 257 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-------------------CEEEECSCCCSSCEEEECTTSCEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-------------------CcccCCCCCCccccccCCCCCCEE
Confidence 677777776432 57788888776531 1122 2233334467888999999
Q ss_pred EEecC-CCeEEEEECCCCceeeeeccCC-CCCeEEEEEeecCCCceEEEEe-CC-----CcEEEeecccCceeeee----
Q 009266 77 ISGSD-DRRVILWDWKTERVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCA-AD-----GQVRHAQILERGGVETK---- 144 (538)
Q Consensus 77 ~t~~~-d~~i~iw~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~l~s~~-~d-----g~v~vwd~~~~~~~~~~---- 144 (538)
+.|+. ...+.+||..+++....- ..+ ...-.+++..+ ++++++.|+ .+ ..+.+||..+.......
T Consensus 258 v~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~ 334 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334 (656)
T ss_dssp EECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred EeCCCCCCceEEecCcCCceeECC-CCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence 99984 457999998876543221 111 11223455666 889999888 33 57899999877654320
Q ss_pred -eccccCCCcEEEEEcCCCCcEEEEEcCC---------CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 145 -LLGKHQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 145 -~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
.+..... ...+..++ ++++.++.+ ..+..||..+............... .......-.++.|...
T Consensus 335 ~p~~~~~~---~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~-~~~~~~~~~av~~~~~ 409 (656)
T 1k3i_A 335 NPMLTADK---QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG-VAPDAMCGNAVMYDAV 409 (656)
T ss_dssp GGGCCCCT---TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE-ECCCCBTCEEEEEETT
T ss_pred cccccccc---cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc-cCCCCCCCceEeccCC
Confidence 0110000 01222333 344555444 3567888887764433222110000 0000011244555443
Q ss_pred CCcEEEEEeCCC-----------eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcC--
Q 009266 215 NANLFAVAGSDE-----------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (538)
Q Consensus 215 ~~~~l~~~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-- 281 (538)
++++++.|+.++ .|.+||..+.+...... .. . .......+++..|++++++.++.
T Consensus 410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~----------~~-m-p~~R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS----------NG-L-YFARTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT----------TC-C-SSCCBSCEEEECTTSCEEEECCBSB
T ss_pred CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc----------CC-C-CCCcccCCeEECCCCCEEEECCccc
Confidence 478888888543 57778877654321100 00 0 01122345567789999988862
Q ss_pred ----------CeEEEeeccC
Q 009266 282 ----------EFIYLFTQDM 291 (538)
Q Consensus 282 ----------~~i~~~d~~~ 291 (538)
..+.+||..+
T Consensus 478 ~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 478 GIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CCTTCCCSBCCCCEEEEGGG
T ss_pred CcCcCCCCcccceEEEcCCC
Confidence 2477888765
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.84 E-value=7.9e-06 Score=76.62 Aligned_cols=254 Identities=9% Similarity=0.017 Sum_probs=151.8
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEE-EEeCCCcEEEeecccCceee
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~ 142 (538)
-+|.+..+. .+|+.+.. ..|+.+++........+ .....+..|+|.+ .+..|+ +-...+.|..+++.......
T Consensus 79 ~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~--~~~~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 79 RSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLL--NNLENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SCEEECSSC-CEEEEECB-SCEEEECTTSCCCEEEE--CSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CeECCcccc-ceeEeecC-ccceeeccCCCcEEEEe--cCCCccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 445565553 34544443 56888888765543322 2344688999997 555555 44467889999887654322
Q ss_pred eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE
Q 009266 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
. +.........|++.+.+.+++++-...+.|.+.++........+. . .......|++.|.++.++++-
T Consensus 153 ~--~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~---------~l~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 153 V--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-Q---------SLEKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp E--ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-S---------SCSCEEEEEEETTTTEEEEEE
T ss_pred E--EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-C---------CCCCCcEEEEEcCCCeEEEec
Confidence 2 222334567889988665677777777889998887544332222 1 112468899999766666665
Q ss_pred eCC-CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCC
Q 009266 223 GSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPP 299 (538)
Q Consensus 223 ~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~ 299 (538)
... +.|..+++..... ..+..........|+|+|.+..|..+. .+.|..+++....
T Consensus 221 ~~~~~~I~r~~~dG~~~---------------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~------ 279 (386)
T 3v65_B 221 WGNTPRIEASSMDGSGR---------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH------ 279 (386)
T ss_dssp CSSSCEEEEEETTSCSC---------------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS------
T ss_pred cCCCCEEEEEeCCCCCc---------------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe------
Confidence 555 7788888764321 111111234578999998766655554 4478888875421
Q ss_pred CCCccccccccccCCCCccccCCCCCCCCcccCCceee-ccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCccee
Q 009266 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (538)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~ 378 (538)
...+. .... ....+++ . .+.++++-...+.|..++..+++.+
T Consensus 280 ---------------------------------~~~~~~~~~~--~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 280 ---------------------------------RKAVISQGLP--HPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp ---------------------------------CEEEECSSCS--SEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred ---------------------------------eEEEEECCCC--CceEEEE-E-CCEEEEeeCCCCeEEEEECCCCcce
Confidence 11111 1111 1456665 2 4556666677788999997788877
Q ss_pred EEeecCcceeeEEee
Q 009266 379 RVIEADRHVVNCIEP 393 (538)
Q Consensus 379 ~~~~~h~~~v~~~~~ 393 (538)
..+......+..|++
T Consensus 323 ~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 323 EIIRNKLHFPMDIHT 337 (386)
T ss_dssp EEEECSCSCCCCEEE
T ss_pred EEEccCCCCCceEEE
Confidence 777644334444444
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.82 E-value=1.3e-06 Score=86.19 Aligned_cols=214 Identities=12% Similarity=0.007 Sum_probs=120.0
Q ss_pred CCEEEEecC-CCeEEEEEC-CCCceeeeeccCCCC----------CeEEEEEeecCCCce----EEEEeCCCcEEEeecc
Q 009266 73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHND----------NVFQAKIMPFTDDRS----IVTCAADGQVRHAQIL 136 (538)
Q Consensus 73 g~~l~t~~~-d~~i~iw~~-~~~~~~~~~~~~~~~----------~v~~l~~~~~~~~~~----l~s~~~dg~v~vwd~~ 136 (538)
+..|..++. ++.|.-+|. .+|+.+.++...... ....++++| .+.. |+.++.++.|..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence 445666666 788999999 899988776322111 112356654 4445 8888899999999999
Q ss_pred cCceeeeeeccccCC--CcEE-EEEcCCCCcEEEEEc------CCCcEEEEecCCCCeeeeeeecccCCC----------
Q 009266 137 ERGGVETKLLGKHQG--RAHK-LAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDR---------- 197 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~---------- 197 (538)
+++.+....+..+.. .+.+ ..+. ++ .+++++ .++.|+.+|.++++.+..+........
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVV-KD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEE-TT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCEEEeecCCCCCccceeecCCEEE-CC--EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 998876644433211 1111 1111 33 345554 379999999999999877764322100
Q ss_pred --------------CC--c--ceeeeeEEEEEcCCCCcEEEEEeCC----------------CeEEEEEcCCccccCCCC
Q 009266 198 --------------RN--Y--MTVVNLNAIAIDPRNANLFAVAGSD----------------EYTRLYDIRKYKWDGSTD 243 (538)
Q Consensus 198 --------------~~--~--~~~~~v~~~~~~~~~~~~l~~~~~d----------------g~v~iwd~~~~~~~~~~~ 243 (538)
.+ . .....-..+++.+. ..+++.++.+ +.|..+|..+++..-..+
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~-~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG-TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCC-CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence 00 0 00000124566666 4566666654 378889998887543322
Q ss_pred CCCCCcccCCCCccCCCccceEEEEEc-CCC---CEEEEEc-CCeEEEeeccCCCCCCCC
Q 009266 244 FGQPADYFCPPNLIGDEQVGITGLAFS-DQS---ELLVSYN-DEFIYLFTQDMGLGPNPP 298 (538)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~---~~l~~~~-~~~i~~~d~~~~~~~~~~ 298 (538)
..... ..-......++. +... .+| +.++.++ ++.++++|..+++.+...
T Consensus 296 ~~~~d-----~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 296 KTPHD-----EWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp SSTTC-----SSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCCCc-----cccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 11100 000000111222 2222 466 4556555 678999999888765443
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.81 E-value=2.7e-05 Score=70.77 Aligned_cols=237 Identities=12% Similarity=0.048 Sum_probs=141.4
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE-eCCCcEEEeecccC---ceeeeeeccccC
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILER---GGVETKLLGKHQ 150 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~-~~dg~v~vwd~~~~---~~~~~~~~~~~~ 150 (538)
+|+.+.. ..|+..++.+.+....+ .....+..++|.+ .+..|+.+ ...+.|..+++... ..... .+....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEE--CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEE-EECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEehh--cCCCceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEE-EEeCCC
Confidence 3444443 46899998877654433 2345688999998 66555554 45688999988751 11111 122223
Q ss_pred CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC-CeEE
Q 009266 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTR 229 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~ 229 (538)
.....|++.+.+.+++++-...+.|.++++........+.. . ......++++|.++.++++.... +.|.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~---------~~~P~~iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-N---------GSKPRAIVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-T---------TCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-C---------CCCcceEEeCCCCCEEEEEccCCCCeEE
Confidence 45678999875546667777788999999875443332221 1 11458899999756666665443 6788
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccc
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (538)
.+++..... ..+....-.....++++|++..|..+. .+.|..+++...
T Consensus 147 ~~~~dG~~~---------------~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~--------------- 196 (316)
T 1ijq_A 147 KGGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--------------- 196 (316)
T ss_dssp EEETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------
T ss_pred EEcCCCCCe---------------EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC---------------
Confidence 887653211 001111234678999999776665554 448999987642
Q ss_pred cccccCCCCccccCCCCCCCCcccCCceeec-cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeec
Q 009266 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 383 (538)
..+.+.. .........+++ . .+.++++-...+.|..++..+++.+..+..
T Consensus 197 ------------------------~~~~~~~~~~~~~~P~giav-~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 197 ------------------------NRKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp ------------------------SCEEEEECTTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred ------------------------ceEEEeecCCccCCcEEEEE-E-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 1111211 111112456666 3 356666777778999999878877766653
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.77 E-value=4.2e-07 Score=92.05 Aligned_cols=117 Identities=13% Similarity=0.025 Sum_probs=77.9
Q ss_pred EEEEcC-CCCEEEEecCCC-----------eEEEEECCCCceee--eeccCCCCCeEEEEEeecCCCceEEEEeC-CCcE
Q 009266 66 TVSFNT-DGDILISGSDDR-----------RVILWDWKTERVKL--SFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQV 130 (538)
Q Consensus 66 ~~~~s~-~g~~l~t~~~d~-----------~i~iw~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~l~s~~~-dg~v 130 (538)
++++.| ++++++.|+.+. .+.+||..+++... .+...+.....++++.+ ++.+++.|+. ...+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC--CCCEEEeCCCCCCce
Confidence 566777 888888887542 58899998876422 22222333444567777 8999999884 4689
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEc-CC-----CcEEEEecCCCCee
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-ED-----GLVQHFDLRTGAAT 186 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~ 186 (538)
.+||..+.+......+... ..-.++++.+++ ++++.|+ .+ ..+.+||+.+.+..
T Consensus 268 ~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEEEGGGTEEEECCCCSSC-CSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEecCcCCceeECCCCCcc-ccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999988776554323222 222355666777 6888888 34 56999999877543
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.77 E-value=2.8e-06 Score=72.15 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=120.0
Q ss_pred CceEEeeccC--CceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 10 NKRARTSVDK--ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 10 ~~~l~t~~~d--~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
+.+..+.+.. ..|+++|+.+|+.+++ ..+..+.- --.+++.. +++.+..-.++.+.+
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tgkv~~~-------------------~~l~~~~f-geGi~~~~-~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETGRILQR-------------------AEVPPPYF-GAGIVAWR-DRLIQLTWRNHEGFV 89 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTCCEEEE-------------------EECCTTCC-EEEEEEET-TEEEEEESSSSEEEE
T ss_pred CEEEEECCCCCCceEEEEECCCCCEEEE-------------------EeCCCCcc-eeEEEEeC-CEEEEEEeeCCEEEE
Confidence 4445555554 4899999999998732 11222211 12233332 334444556889999
Q ss_pred EECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccC---CCcEEEEEcCCCCc
Q 009266 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIEPGSPH 164 (538)
Q Consensus 88 w~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~ 164 (538)
||..+.+.+.++..+. .=..| .+ ++..|+.+..++.|.++|..+.+.+.......+. ..++.+.+. ++ .
T Consensus 90 ~D~~tl~~~~ti~~~~--~Gwgl--t~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~ 161 (243)
T 3mbr_X 90 YDLATLTPRARFRYPG--EGWAL--TS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-E 161 (243)
T ss_dssp EETTTTEEEEEEECSS--CCCEE--EE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred EECCcCcEEEEEeCCC--CceEE--ee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-E
Confidence 9999999988884332 22344 45 7778887777899999999988776664444332 234556665 45 5
Q ss_pred EEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCC---cceeeeeEEEEEcCCCCcEEEEEe
Q 009266 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN---YMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
+++..-....|.+.|.++++.+..+.......... .......+.||++|.+.+++++|-
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 66666678899999999999998887654332211 112235789999998666666664
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.73 E-value=5.8e-05 Score=71.03 Aligned_cols=249 Identities=11% Similarity=0.029 Sum_probs=148.8
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeecccCc--eeeeeeccccC
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERG--GVETKLLGKHQ 150 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~~~--~~~~~~~~~~~ 150 (538)
.+|+.+.. ..|+..++........+ .....+..|+|.+ ....|+.+. ..+.|+.+++.... ......+....
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEE--CSCSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred ceeEEecc-ceeEEEccCCcceeEec--cccCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 35554443 67898898766543322 3456788999998 666665554 56788888876422 11111233344
Q ss_pred CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC-CCeEE
Q 009266 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTR 229 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~ 229 (538)
.....|++.+.+.+++++-...+.|.+.++........+.. .......|++.|.++.++++-.. .+.|.
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----------~~~~P~~iavdp~~g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIK 228 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----------SSCCEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC----------CCCCcceEEEecccCeEEEEeCCCCCEEE
Confidence 56788999985547777777788999999876654433321 11146889999975656555433 46788
Q ss_pred EEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccc
Q 009266 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (538)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (538)
..++..... ..+....-.....|++++.+..|..+. .+.|..+++...
T Consensus 229 ~~~~dG~~~---------------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~--------------- 278 (400)
T 3p5b_L 229 KGGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--------------- 278 (400)
T ss_dssp EEETTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------
T ss_pred EEeCCCCcc---------------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC---------------
Confidence 888764321 111112234678999998777666655 447888887642
Q ss_pred cccccCCCCccccCCCCCCCCcccCCcee-eccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcc
Q 009266 308 EASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH 386 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~ 386 (538)
..+.+ ...........+++ . .+.++++-...+.|..++..+|+.+..+.....
T Consensus 279 ------------------------~~~~~~~~~~~l~~P~gl~v-~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~ 332 (400)
T 3p5b_L 279 ------------------------NRKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 332 (400)
T ss_dssp ------------------------CCEEEEECSSTTSSEEEEEE-E-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCS
T ss_pred ------------------------ccEEEEeCCCCCCCCEEEEE-e-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCC
Confidence 11111 11111111345555 2 345666666778899999888888777764444
Q ss_pred eeeEEee
Q 009266 387 VVNCIEP 393 (538)
Q Consensus 387 ~v~~~~~ 393 (538)
.+..++.
T Consensus 333 ~p~~i~v 339 (400)
T 3p5b_L 333 SPEDMVL 339 (400)
T ss_dssp CEEEEEE
T ss_pred CCceEEE
Confidence 4445443
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.73 E-value=5.1e-06 Score=82.17 Aligned_cols=113 Identities=15% Similarity=0.055 Sum_probs=68.6
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCCC--------eEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeee
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDN--------VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~--------v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 145 (538)
..|+.++..+.|.-+|..+|+.+.++....... ...+++ .+..|+.++.++.|..+|..+++.+....
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 344444443459999999999887763221110 022233 34578888889999999999998876644
Q ss_pred ccccCC--CcE-EEEEcC---CCCcEEEEEc------CCCcEEEEecCCCCeeeeee
Q 009266 146 LGKHQG--RAH-KLAIEP---GSPHVFYTCG------EDGLVQHFDLRTGAATELFT 190 (538)
Q Consensus 146 ~~~~~~--~v~-~~~~~~---~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~ 190 (538)
+..+.. .+. ...+.. ++..++++++ .++.|+.+|..+++.+....
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 433211 111 111111 2222566654 37899999999999887654
No 270
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.72 E-value=9.8e-05 Score=73.52 Aligned_cols=160 Identities=7% Similarity=0.013 Sum_probs=99.5
Q ss_pred CcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC--CCcEEEeecccC
Q 009266 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILER 138 (538)
Q Consensus 62 ~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~--dg~v~vwd~~~~ 138 (538)
.....|++.+.+. +.++-...+.|.+.++... ....+..........|++.| .+.+|+.+.. .+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp--~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEET--TTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEec--CCCeEEEeccCCCCEEEEEECCCC
Confidence 5688999999554 5556667789999998744 33334334455678899998 6555655543 356666665432
Q ss_pred ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
..... ....-.....|++.+.+.+++++-...+.|..+++............ ......|++..+ .+
T Consensus 161 ~~~~l--~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gi~~~~~--~l 226 (619)
T 3s94_A 161 SRFII--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS----------LPHPFALTLFED--IL 226 (619)
T ss_dssp SCEEE--ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------CCCEEESSS--EE
T ss_pred ceEEE--EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC----------CCCceEEEEeCC--EE
Confidence 22211 22234567899999977566677677788999998754332222100 012346677653 56
Q ss_pred EEEEeCCCeEEEEEcCCccc
Q 009266 219 FAVAGSDEYTRLYDIRKYKW 238 (538)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~~ 238 (538)
+++-...+.|...+..+++.
T Consensus 227 y~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEECTTTCSEEEEESSSCCC
T ss_pred EEecCCCCEEEEEECCCCcc
Confidence 66666778899999877653
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.69 E-value=3e-05 Score=72.67 Aligned_cols=201 Identities=9% Similarity=0.040 Sum_probs=122.8
Q ss_pred cCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceE-EEEeCCCcEEEeecccC
Q 009266 61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILER 138 (538)
Q Consensus 61 ~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~vwd~~~~ 138 (538)
...+..++|.+.+. ++++-...+.|+.+++..+... .+..........|++.+ .+..| ++-...+.|.+.++...
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~~~~~p~glavd~--~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVSTGLESPGGLAVDW--VHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEECSSCSCCCCEEEET--TTTEEEEEETTTTEEEECBTTSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEEeCCCCCccEEEEEe--CCCeEEEEcCCCCeEEEEeCCCC
Confidence 34578999997554 5555566788999998765533 33233334567788887 54444 55555678888887644
Q ss_pred ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
..... +.........|++.|.+..++++-... +.|..+++.......... . .....+.|+|+|.+++
T Consensus 192 ~~~~l--~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~---------~~~~PnGlavd~~~~~ 259 (386)
T 3v65_B 192 HRKVL--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-T---------HLFWPNGLTIDYAGRR 259 (386)
T ss_dssp SCEEE--ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S---------SCSCEEEEEEEGGGTE
T ss_pred ceEEe--ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-C---------CCCCeeeEEEeCCCCE
Confidence 32221 333345678999998775666665555 788888876543332221 1 1114678999987667
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
++++-...+.|..+++..... ..+.........+|++. .+.++++.. .+.|..++..++
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~---------------~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 260 MYWVDAKHHVIERANLDGSHR---------------KAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEEETTTTEEEEECTTSCSC---------------EEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEECCCCEEEEEeCCCCee---------------EEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCC
Confidence 777777778899998764321 11111113356778883 344444443 557888885554
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.68 E-value=0.00013 Score=66.73 Aligned_cols=279 Identities=10% Similarity=0.055 Sum_probs=144.8
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec---cCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
...+.+|.|.+.+..+++| ..|.| +.....|+.-.... ......+.+|.|.+ +..++ ++..+.|.. ....
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~---~~~~~-~g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG---NEGWI-VGEPPIMLH-TTDG 107 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET---TEEEE-EEETTEEEE-ESST
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC---CeEEE-EECCCeEEE-ECCC
Confidence 4579999998888878755 46655 33444443211111 11244788999875 33444 455564433 2222
Q ss_pred Cceeee-eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 138 RGGVET-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 138 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
++.-.. .....+...+..|.+.+.+ .+++++ ..+.|.. ....++.-...... ....+..+++.|+ +
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~---------~~~~~~~~~~~~~-~ 174 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQE---------AIGVMRNLNRSPS-G 174 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECS---------CCCCEEEEEECTT-S
T ss_pred CCCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecC---------CCcceEEEEEcCC-C
Confidence 222111 1111233457778877666 455555 4554432 12223332222211 1225788999996 5
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~ 296 (538)
.+++++...+.++-+|-...... .........+..+++.+++++++++..+.+++.....+..
T Consensus 175 ~~~~~g~~G~~~~S~d~gG~tW~---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t-- 237 (327)
T 2xbg_A 175 EYVAVSSRGSFYSTWEPGQTAWE---------------PHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN-- 237 (327)
T ss_dssp CEEEEETTSSEEEEECTTCSSCE---------------EEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE--
T ss_pred cEEEEECCCcEEEEeCCCCCcee---------------ECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe--
Confidence 67666544333333332111100 0001123567889999999988888777777663221100
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcc
Q 009266 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
...+.. ........+..+.+ .+++++++++. +|.| ++....|+
T Consensus 238 ---------------------------------W~~~~~-~~~~~~~~~~~v~~-~~~~~~~~~g~-~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 238 ---------------------------------WGELLS-PLRRNSVGFLDLAY-RTPNEVWLAGG-AGAL-LCSQDGGQ 280 (327)
T ss_dssp ---------------------------------ECCCBC-TTSSCCSCEEEEEE-SSSSCEEEEES-TTCE-EEESSTTS
T ss_pred ---------------------------------eEeccC-CcccCCcceEEEEe-cCCCEEEEEeC-CCeE-EEeCCCCc
Confidence 000000 00000012677887 78888777765 5666 34445565
Q ss_pred eeEEeec---CcceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 377 LIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 377 ~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
....+.. +...+.++.|.++++ +++++.+|.|.-++-
T Consensus 281 tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 281 TWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred ccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 5554442 235678888875554 566667888776654
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.62 E-value=1.8e-05 Score=71.80 Aligned_cols=220 Identities=12% Similarity=0.102 Sum_probs=124.8
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC--CeE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD--RRV 85 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d--~~i 85 (538)
++++++++....+.|..|+... +.. ..+. ....+.+|++.++|+++++.... ..|
T Consensus 41 ~~g~lyv~d~~~~~I~~~d~~g-~~~---------------------~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 41 PDGTIFVTNHEVGEIVSITPDG-NQQ---------------------IHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp TTSCEEEEETTTTEEEEECTTC-CEE---------------------EEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCCCEEEEeCCCCeEEEECCCC-ceE---------------------EEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence 4566666655677777777663 221 1111 12468899999999977665432 246
Q ss_pred EEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce-eee-e------eccccCCCcEEEE
Q 009266 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VET-K------LLGKHQGRAHKLA 157 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~-~------~~~~~~~~v~~~~ 157 (538)
..++..+++...............++..+ ++..+++-...+.|.+++..++.. +.. . ...........|
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 66777777753322112222344555554 555455544678888888764321 110 0 001111234455
Q ss_pred EcCCCCcEEEEEcCCCcEEEEecCC-CCe--eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 009266 158 IEPGSPHVFYTCGEDGLVQHFDLRT-GAA--TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 234 (538)
+|++..++++-...+.|.+|++.. ++. ...+.. ......+++.++ ++++++....+.|.+++..
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-----------~~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-----------QTNIDDFAFDVE-GNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-----------SCCCSSEEEBTT-CCEEEECBTTCCEEEECTT
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-----------cCCCCCeEECCC-CCEEEEeCCCCeEEEECCC
Confidence 777756667777788999999875 322 111110 013466899997 6777777677889999865
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEc---CCCCEEEEEc
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS---DQSELLVSYN 280 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~ 280 (538)
+++... ... .......++++|. |+++.|.+++
T Consensus 242 -G~~~~~------------~~~-~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 242 -RSTTII------------AQA-EQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp -CCEEEE------------ECG-GGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred -CCEEEE------------eec-ccccCCceEEEEecccCCCCEEEEEC
Confidence 332100 000 0112457899998 8876665544
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.62 E-value=0.00011 Score=67.62 Aligned_cols=201 Identities=9% Similarity=0.035 Sum_probs=123.0
Q ss_pred cCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceE-EEEeCCCcEEEeecccC
Q 009266 61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILER 138 (538)
Q Consensus 61 ~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~vwd~~~~ 138 (538)
...+..++|.+... ++++-...+.|+.+++..+.... +..........|++.+ .+..| ++-...+.|.+.++...
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~~~~~~~p~glavd~--~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VVSTGLESPGGLAVDW--VHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-EEeCCCCCccEEEEec--CCCeEEEEcCCCCeEEEEcCCCC
Confidence 34578999997554 44555567889999987655333 3233334567889986 54444 55556788999988654
Q ss_pred ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
..... +.........|++.|.+..++++-... +.|..+++........+. . .....+.|+++|.+++
T Consensus 149 ~~~~l--~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~---------~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 149 HRKVL--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-T---------HLFWPNGLTIDYAGRR 216 (349)
T ss_dssp SCEEE--ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-S---------SCSCEEEEEEETTTTE
T ss_pred ceEEE--EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-C---------CCCCcceEEEeCCCCE
Confidence 32221 333345678999999765666666555 788888876543322211 1 1124688999987667
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
++++-...+.|..+++..... ..+.........++++. .+.++++-. .+.|..++..++
T Consensus 217 lY~aD~~~~~I~~~~~dG~~~---------------~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSHR---------------KAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSC---------------EEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEECCCCEEEEEeCCCCce---------------EEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCC
Confidence 777777778899999764321 01111113356777774 344444433 557888875554
No 275
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.61 E-value=9.1e-05 Score=75.52 Aligned_cols=196 Identities=12% Similarity=0.053 Sum_probs=117.5
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEE-EEeCCCcEEEeecccCce--e
Q 009266 65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGG--V 141 (538)
Q Consensus 65 ~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~-s~~~dg~v~vwd~~~~~~--~ 141 (538)
+|.+..+. .+|+.+.. ..|+..++....... + ......+..|+|.+ ....|+ +-...+.|+.+++..... .
T Consensus 388 ~C~~~~~~-p~Ll~an~-~~Ir~i~l~~~~~~~-l-~~~~~~~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~~~~~ 461 (791)
T 3m0c_C 388 ACKAVGSI-AYLFFTNR-HEVRKMTLDRSEYTS-L-IPNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSS 461 (791)
T ss_dssp CCEETTSC-CEEEEECB-SSEEEECTTSCCCEE-E-ECSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------
T ss_pred eeeecccc-cccccccc-cceeEeeccCCccee-e-ecCCCceEEEeecc--cCCeeEEeeccceeEEEEeccCCCCCcc
Confidence 34444332 24444433 468888877654432 2 23455778999997 555555 444567888888864311 1
Q ss_pred eeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
....+.........|++.+.+.+++++-...+.|.+.++........+. .. ......|++.|.++.++++
T Consensus 462 ~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~---------l~~P~gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 462 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EN---------GSKPRAIVVDPVHGFMYWT 531 (791)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CT---------TCCEEEEEEETTTTEEEEE
T ss_pred eeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CC---------CCCcceEEEecCCCCEEEe
Confidence 1122333445677899998776777777888999999987654433332 11 1146899999975666665
Q ss_pred EeCC-CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccC
Q 009266 222 AGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (538)
Q Consensus 222 ~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~ 291 (538)
-... +.|...++..... ..+..........|++.+.+..|+.+. .+.|..+++..
T Consensus 532 D~g~~~~I~~~~~dG~~~---------------~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 532 DWGTPAKIKKGGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp ECSSSCEEEEEETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cCCCCCeEEEEecCCCce---------------EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 4333 6788888764321 111112234688999998766665554 34788888764
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.61 E-value=6.3e-05 Score=68.19 Aligned_cols=246 Identities=15% Similarity=0.080 Sum_probs=143.4
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEE-EEeCCCcEEEeecccCceeeeeeccccCCCc
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v 153 (538)
+|+.+. ...|+..++........+.......+..|.|.+ ....|+ +-...+.|..+++........ .+.......
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~-~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQN-VVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCE-EEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEE-EEcCCCCCc
Confidence 444443 357999998866422222222234577899998 545554 445578898898876532111 122223456
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe-CCCeEEEEE
Q 009266 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYD 232 (538)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd 232 (538)
..+++.+.+.+++++-...+.|.++++........+. . .......+++.|.++.++++-. ..+.|..++
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~---------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-Q---------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S---------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-C---------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 7899987665677777777899999987543322221 1 1124578999987555555542 357788887
Q ss_pred cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCcccccccc
Q 009266 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (538)
+..... ..+....-.....|+++|++..|..+. .+.|..+++....
T Consensus 152 ~dG~~~---------------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~----------------- 199 (318)
T 3sov_A 152 MDGSSR---------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN----------------- 199 (318)
T ss_dssp TTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------
T ss_pred cCCCCe---------------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-----------------
Confidence 753210 011111234568999999766665554 4589998876421
Q ss_pred ccCCCCccccCCCCCCCCcccCCceeec-cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceee
Q 009266 311 EMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN 389 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~ 389 (538)
.+.+.. ... ....+++ . .+.++++-...+.|..++..+|+.+..+......+.
T Consensus 200 ----------------------~~~~~~~~~~--~P~glav-~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~ 253 (318)
T 3sov_A 200 ----------------------RQAVVKGSLP--HPFALTL-F-EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM 253 (318)
T ss_dssp ----------------------CEEEECSCCS--CEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCC
T ss_pred ----------------------eEEEecCCCC--CceEEEE-e-CCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCc
Confidence 111111 111 1456666 3 345666666778999999888887766654333333
Q ss_pred EEe
Q 009266 390 CIE 392 (538)
Q Consensus 390 ~~~ 392 (538)
.++
T Consensus 254 ~i~ 256 (318)
T 3sov_A 254 DIH 256 (318)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.57 E-value=0.00021 Score=64.94 Aligned_cols=230 Identities=11% Similarity=0.006 Sum_probs=133.7
Q ss_pred eEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCC-EEEEecCCCeEEEEEC
Q 009266 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDW 90 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~ 90 (538)
+|+.+.. ..|+..++.+++.. ..+. ....+.+++|.+.+. ++++-...+.|..+++
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~---------------------~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~ 59 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYT---------------------SLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCE---------------------EEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEECC-CeEEEEECCCcceE---------------------ehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEEC
Confidence 4444443 46888888755432 1122 345678999998654 5555566789999998
Q ss_pred CC---CceeeeeccCCCCCeEEEEEeecCCCceE-EEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEE
Q 009266 91 KT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (538)
Q Consensus 91 ~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (538)
.. +.....+..........|++.+ .+..| ++-...+.|.+.++........ +.........+++.|.+..++
T Consensus 60 ~g~~~~~~~~~~~~~~~~~p~glavd~--~~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 60 DRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp --------CEEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTTTEEE
T ss_pred CCCCCCcccEEEEeCCCCCcCEEEEee--cCCeEEEEECCCCEEEEEeCCCCceEEE--EECCCCCcceEEeCCCCCEEE
Confidence 75 1222333222334567889986 45444 4545678999999865433221 222335678999999764565
Q ss_pred EEEcCC-CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCC
Q 009266 167 YTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (538)
Q Consensus 167 ~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (538)
++.... +.|..+++.... ...+... .....+.|+++|++++++++-...+.|..+++...... .
T Consensus 136 ~~d~~~~~~I~~~~~dG~~-~~~~~~~---------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~---- 200 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNGVD-IYSLVTE---------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-T---- 200 (316)
T ss_dssp EEECSSSCEEEEEETTSCC-EEEEECS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-E----
T ss_pred EEccCCCCeEEEEcCCCCC-eEEEEEC---------CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-E----
Confidence 555443 688888876433 2222111 11146789999876666777777789999998643210 0
Q ss_pred CCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
+ .. .........++++.. +.++++-. .+.|..++..++
T Consensus 201 -----~--~~-~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 201 -----I--LE-DEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp -----E--EE-CTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred -----E--ee-cCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCC
Confidence 0 00 001123456777753 44444444 458888887654
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.56 E-value=5.8e-05 Score=71.72 Aligned_cols=211 Identities=14% Similarity=0.116 Sum_probs=116.2
Q ss_pred cEEEEEEcCC---CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC---Cc-EEEeec
Q 009266 63 CVNTVSFNTD---GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQ-VRHAQI 135 (538)
Q Consensus 63 ~v~~~~~s~~---g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d---g~-v~vwd~ 135 (538)
....|+|+|+ +.++++-.. +.|+.+++.++.... + .........|+|++ ++.++++.... .. +.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~-~-~~~~~~P~giavd~--dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI-K-TTNIGQCADVNFTL--NGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE-E-CCCCSCEEEEEECT--TCCEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE-e-ecCCCCccEEEECC--CCCEEEEcCCCCcccceEEEEEC
Confidence 4678999984 544444333 889999988776543 3 23445689999999 88844443321 11 222332
Q ss_pred ccCceeeeeeccccCCCcEEEEEcC-CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 136 LERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
... ......+. .......+++.| ++ .++++-...+.|+.++..++.....+..... ......++|+|+
T Consensus 215 ~~~-~~~~~~~~-~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~--------~~~~~~ia~dpd 283 (433)
T 4hw6_A 215 ASG-FTERLSLC-NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMDT--------KGSNFHIVWHPT 283 (433)
T ss_dssp GGT-TCCEEEEE-ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECSC--------CSSCEEEEECTT
T ss_pred CCC-eecccccc-ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccCC--------CCCcccEEEeCC
Confidence 221 11001111 234456789999 55 6666766778899999887766333221111 012246999998
Q ss_pred CCcEEEEEeCCCeEEEEEcCC--ccccCCCCC-CC-CCcccCCCCccCCCccceEEEEE---------cCCCCEEEEEc-
Q 009266 215 NANLFAVAGSDEYTRLYDIRK--YKWDGSTDF-GQ-PADYFCPPNLIGDEQVGITGLAF---------SDQSELLVSYN- 280 (538)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~---------s~~~~~l~~~~- 280 (538)
+..++++-...+.|+.+++.. +.+.....+ +. ....+.-.......-.....+++ .++|.++++-.
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 433666666778899987652 221100000 00 00000000000011234678999 77777776665
Q ss_pred CCeEEEeec
Q 009266 281 DEFIYLFTQ 289 (538)
Q Consensus 281 ~~~i~~~d~ 289 (538)
.++|+.++.
T Consensus 364 n~~I~~~~~ 372 (433)
T 4hw6_A 364 SHTVRVLTP 372 (433)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEECC
Confidence 448888874
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.54 E-value=9.5e-05 Score=67.00 Aligned_cols=203 Identities=9% Similarity=0.028 Sum_probs=122.0
Q ss_pred CcEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce
Q 009266 62 GCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (538)
Q Consensus 62 ~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 140 (538)
..+.+|+|.+. +.+..+-...+.|..+++..+.....+..........+++.+ ..+.++++-...+.|.++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~-~~g~ly~~d~~~~~I~~~~~dG~~~ 113 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW-LGEKLYWTDSETNRIEVSNLDGSLR 113 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET-TTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc-CCCeEEEEECCCCEEEEEECCCCcE
Confidence 35678999985 555566666789999998766432222222334567888886 1344445555678899999865332
Q ss_pred eeeeeccccCCCcEEEEEcCCCCcEEEEEc-CCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE
Q 009266 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 219 (538)
... +.........|++.|.+..++++-. ..+.|..+++........+. . .....+.|+++|++++++
T Consensus 114 ~~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~---------~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 114 KVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-S---------EIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp EEE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-S---------SCSCEEEEEEETTTTEEE
T ss_pred EEE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-C---------CCCCccEEEEeccCCEEE
Confidence 221 2234456789999987645555542 35788888876433222211 1 111457899999766777
Q ss_pred EEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCC
Q 009266 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (538)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (538)
++-+..+.|..+++..... ..+.........++++..+ .++.+-. .+.|..++..++.
T Consensus 182 ~aD~~~~~I~~~d~dG~~~---------------~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTNR---------------QAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTSCSC---------------EEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCEEEEEcCCCCce---------------EEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCC
Confidence 7777788999999864221 0111112334567777643 3333433 5588888886653
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.53 E-value=8e-05 Score=64.30 Aligned_cols=216 Identities=13% Similarity=0.113 Sum_probs=129.7
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
+.+.+-...+..+++.|++..++++...++.|...|+. ++.+..+.... ....-.|++.++ +.++++.-
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---------~~D~EGIa~~~~-g~~~vs~E 88 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---------VKDLETIEYIGD-NQFVISDE 88 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---------CSSEEEEEECST-TEEEEEET
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---------CCChHHeEEeCC-CEEEEEEC
Confidence 34666767899999999875676777788999999988 77776665321 124677888886 56666655
Q ss_pred CCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCCCCCCCCCC
Q 009266 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (538)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (538)
.++.+.++.+........ .............+.....|+|+|.+..|.++. .....+|.+.. ....
T Consensus 89 ~~~~l~~~~v~~~~~i~~------~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~------ 155 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKI------LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSS------ 155 (255)
T ss_dssp TTTEEEEEEECTTCCEEE------EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCS------
T ss_pred CCCcEEEEEcCCCCeeee------eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccC------
Confidence 678888888765431000 000000001122356689999999986665555 33444554431 1000
Q ss_pred ccccccccccCCCCccccCCCCCCCCcccCCcee-----eccccceeeeEEEEecC-CCcEEEEeccCCeEEEeeccCcc
Q 009266 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-----KGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGE 376 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~v~~~s~-~~~~l~~gs~dg~i~iwd~~~~~ 376 (538)
..+..+ ........+.+++| +| .+++++.......|.++|.. ++
T Consensus 156 ----------------------------~~l~i~~~~~~~~~~~~~d~S~l~~-dp~tg~lliLS~~s~~L~~~d~~-g~ 205 (255)
T 3qqz_A 156 ----------------------------NELHISKDKALQRQFTLDDVSGAEF-NQQKNTLLVLSHESRALQEVTLV-GE 205 (255)
T ss_dssp ----------------------------SCCEEEECHHHHHTCCSSCCCEEEE-ETTTTEEEEEETTTTEEEEECTT-CC
T ss_pred ----------------------------CceeeecchhhccccccCCceeEEE-cCCCCeEEEEECCCCeEEEEcCC-CC
Confidence 000000 00000012567888 55 45666777777889999964 66
Q ss_pred eeEEeecCc---------ceeeEEeecCCCCeEEEeecCCceEEecC
Q 009266 377 LIRVIEADR---------HVVNCIEPHPHSTVLASSGIESDIKILTP 414 (538)
Q Consensus 377 ~~~~~~~h~---------~~v~~~~~s~~~~~l~s~~~dg~v~vw~~ 414 (538)
++..+.-.. ...-.|+|.++|++.++ +.-..++++..
T Consensus 206 ~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 206 VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 666554322 24688999999985555 55566665543
No 281
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.50 E-value=1.6e-06 Score=87.71 Aligned_cols=242 Identities=11% Similarity=0.033 Sum_probs=135.5
Q ss_pred CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe-CCCcEEEeecccC---ceeeeeeccccCCCcEEEEE
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILER---GGVETKLLGKHQGRAHKLAI 158 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~-~dg~v~vwd~~~~---~~~~~~~~~~~~~~v~~~~~ 158 (538)
+.|++.++.+......+ .....+..|+|.+ .+..|+.+. ..+.|+.+++... ..... .+.........|++
T Consensus 386 ~~I~~id~~~~~~~~~~--~~~~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~-~i~~~~~~P~glav 460 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VISRDIQAPDGLAV 460 (699)
T ss_dssp TC-CEECTTSCCEECCS--CCCTTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCC-BCCSCC--CCCEEC
T ss_pred cceEEEeCCCCcceeee--ccCcceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEE-EEeCCCCCcceEEE
Confidence 57888888766543332 2234567899998 666666654 4678998888641 11111 12222234567888
Q ss_pred cCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC-CeEEEEEcCCcc
Q 009266 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYK 237 (538)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~ 237 (538)
.+.+.+++++-...+.|.++++........+.. .......|+++|.++.++++-... +.|.++++....
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~----------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC----------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceEEEEeC----------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 865546666666778899999876543333221 011356789998755555554333 677776664321
Q ss_pred ccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccCCC
Q 009266 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (538)
. ..+..........|+|+|++..|..+. .+.|.++++.....
T Consensus 531 ~---------------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--------------------- 574 (699)
T 1n7d_A 531 I---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--------------------- 574 (699)
T ss_dssp C---------------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC---------------------
T ss_pred e---------------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce---------------------
Confidence 0 011111123467899999766555444 44799888764211
Q ss_pred CccccCCCCCCCCcccCCceeec-cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeec
Q 009266 316 HTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 394 (538)
+.+.. .........|++ ..+ .++++....+.|..++..+++.+..+......++.|++.
T Consensus 575 ------------------~~~~~~~~~~~~P~glav-d~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 575 ------------------KTILEDEKRLAHPFSLAV-FED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp ------------------EEECCCSSSCSSCCCCEE-ETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred ------------------EEEEecCCcCCCceEeEE-ECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 11110 000001234444 333 455566667899999988888887775443345555544
Q ss_pred C
Q 009266 395 P 395 (538)
Q Consensus 395 ~ 395 (538)
+
T Consensus 635 ~ 635 (699)
T 1n7d_A 635 H 635 (699)
T ss_dssp S
T ss_pred C
Confidence 3
No 282
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.50 E-value=3.3e-05 Score=70.59 Aligned_cols=210 Identities=10% Similarity=0.031 Sum_probs=119.6
Q ss_pred CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCC----CC------cceeeeeEEEEEcCCCCcEEE
Q 009266 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR----RN------YMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~------~~~~~~v~~~~~~~~~~~~l~ 220 (538)
.....+++.+++ ++++++..++.|..|+..++... .+........ .+ ......+..+++.++++++++
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 345678899987 66778888899999998765443 2221100000 00 001124678999973255544
Q ss_pred EEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEcC------------------
Q 009266 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND------------------ 281 (538)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~------------------ 281 (538)
+...+.|..++..++..... . .............+++.+ +|+++++...
T Consensus 97 -~d~~~~i~~~d~~~g~~~~~----------~-~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 97 -VDCYYHLSVVGSEGGHATQL----------A-TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp -EETTTEEEEECTTCEECEEE----------E-SEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred -EECCCCEEEEeCCCCEEEEe----------c-ccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 44445588888765432100 0 000001123467899999 8987776532
Q ss_pred CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe
Q 009266 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (538)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g 361 (538)
+.|+.|+..++ . ...+..... ....+++ +|+|++|+.+
T Consensus 165 g~v~~~d~~~~--------------------------------------~-~~~~~~~~~--~p~gia~-~~dg~~lyv~ 202 (322)
T 2fp8_A 165 GRLIKYDPSTK--------------------------------------E-TTLLLKELH--VPGGAEV-SADSSFVLVA 202 (322)
T ss_dssp EEEEEEETTTT--------------------------------------E-EEEEEEEES--CCCEEEE-CTTSSEEEEE
T ss_pred ceEEEEeCCCC--------------------------------------E-EEEeccCCc--cCcceEE-CCCCCEEEEE
Confidence 35666665432 0 111111111 2457888 9999866554
Q ss_pred -ccCCeEEEeeccCcc--eeEEeecCcceeeEEeecCCCCeEEEeec----------CCceEEecCCCC
Q 009266 362 -SDCGRIFIWKKKGGE--LIRVIEADRHVVNCIEPHPHSTVLASSGI----------ESDIKILTPNAA 417 (538)
Q Consensus 362 -s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------dg~v~vw~~~~~ 417 (538)
+..+.|++|++.... ....+....+ ...+++.++|+++++... .+.|.+++....
T Consensus 203 d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~ 270 (322)
T 2fp8_A 203 EFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN 270 (322)
T ss_dssp EGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC
T ss_pred eCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCC
Confidence 667899999987431 1122221223 788999999997766654 466888887543
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=0.00014 Score=69.13 Aligned_cols=169 Identities=10% Similarity=0.027 Sum_probs=94.7
Q ss_pred CeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeecc-ccCCCcEEEEE-------cCCCCcEEEEEcCCC----
Q 009266 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG-KHQGRAHKLAI-------EPGSPHVFYTCGEDG---- 173 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~~~v~~~~~-------~~~~~~~l~s~~~dg---- 173 (538)
....|+|.|...+.++++....+.|++.|+.++......... ........|+| .+++..++++-..++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 466889987112444444444567888888766554332111 12335789999 999854555544432
Q ss_pred --cEEEEecCC-CCee-----eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcC-------Cccc
Q 009266 174 --LVQHFDLRT-GAAT-----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR-------KYKW 238 (538)
Q Consensus 174 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-------~~~~ 238 (538)
.|.+++... +... ..+. .......++++|+++.++++-...+.|..+++. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-----------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-----------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-----------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred CceEEEEecCCCCceeecccceeec-----------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 266665333 2221 1121 011346788999767888888889999999997 4432
Q ss_pred cCC---CCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeecc
Q 009266 239 DGS---TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQD 290 (538)
Q Consensus 239 ~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~ 290 (538)
... ...+ .... ............|+|+|+|++|..+. ..+|+.++..
T Consensus 289 ~tp~~~~~~g-~~~~----l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 289 WDPIVKNNPN-TFKQ----LFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCCBGGGCTT-TEEE----EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eccccccccc-ccce----eEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 000 0000 0000 00111234568999999999654443 4588887654
No 284
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.48 E-value=0.00063 Score=72.59 Aligned_cols=192 Identities=8% Similarity=0.006 Sum_probs=101.0
Q ss_pred cCcEEEEEEcCC------CCEEEEecC-CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEe
Q 009266 61 RGCVNTVSFNTD------GDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (538)
Q Consensus 61 ~~~v~~~~~s~~------g~~l~t~~~-d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vw 133 (538)
...|.|+++.|. ++++|.|.. +++|+|+++.+.+.+....-+......++.+.......+|..|-.+|.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 467999999863 479999987 9999999998766554332222234556665543244688899999988766
Q ss_pred ecc--cCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee-EEEE
Q 009266 134 QIL--ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIA 210 (538)
Q Consensus 134 d~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~ 210 (538)
.+. ++.....+...--+.++.-..+...+..-+++++. ....+|.-+ ++.. +..... ..+ ....
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~-~~l~--~s~l~~---------~~v~~~~~ 699 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSD-RPTVIYSSN-HKLV--FSNVNL---------KEVNYMCP 699 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESS-SCEEEEESS-SSEE--EEEBSS---------SCCCEEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECC-CCEEEEEcC-CceE--EeccCh---------HHhceEec
Confidence 654 33332221111123455444444444333444443 334444332 2211 111110 012 2233
Q ss_pred EcCCC-CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc
Q 009266 211 IDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (538)
Q Consensus 211 ~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (538)
|+... ..-++..+ ++.++|..+...+.. ....+ .-...++.++++|..+.++.+.
T Consensus 700 F~se~~~~g~v~~~-~~~LrI~~i~~~~~~------------~~~~i--pL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 700 LNSDGYPDSLALAN-NSTLTIGTIDEIQKL------------HIRTV--PLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp ECCSSSTTEEEEEC-SSCEEEEEECCSSSE------------EEEEE--ECSSEEEEEEEEGGGTEEEEEE
T ss_pred cCcccCCCcEEEEc-CCceEEEEecccCCe------------eEEEE--eCCCCceEEEEcCCCCEEEEEE
Confidence 43211 12344333 456999887543210 00111 1134788999999887665544
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=8.3e-05 Score=70.68 Aligned_cols=155 Identities=9% Similarity=0.009 Sum_probs=93.6
Q ss_pred CeEEEEEeecCC-CceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC----cEEEEec
Q 009266 106 NVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG----LVQHFDL 180 (538)
Q Consensus 106 ~v~~l~~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~ 180 (538)
....|+++| . +..|+.+...+.|+.+++..+.... +.........|+|++++..++++....+ .+.+++.
T Consensus 138 ~P~~lavdp--~~~g~Lyv~d~~~~I~~id~~~~~v~~---~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDP--KNHNHLYLVGEQHPTRLIDFEKEYVST---VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEET--TEEEEEEEEEBTEEEEEEETTTTEEEE---EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECC--CCCCeEEEEeCCCcEEEEECCCCEEEE---EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 457889986 3 3445555544888889887654332 2224456889999999943555544322 2333443
Q ss_pred CCCCee--eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccC
Q 009266 181 RTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (538)
Q Consensus 181 ~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (538)
.+... ..+. .......++++|+++.++++-...+.|+.|+......... ...
T Consensus 213 -~g~~~~~~~l~-----------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~--------------~~~ 266 (430)
T 3tc9_A 213 -ESGFKVITELT-----------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL--------------FTI 266 (430)
T ss_dssp -GGTSCSEEEEE-----------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE--------------EEC
T ss_pred -CCceeeeeeec-----------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--------------EEc
Confidence 33222 1111 1113567889995477777777888999999876542100 000
Q ss_pred CCccceEEEEEcCCCCEEEEEc--CCeEEEeeccC
Q 009266 259 DEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (538)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~ 291 (538)
........++|+|+|++|..+. .+.|++++...
T Consensus 267 ~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 267 QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 1123567899999999555543 45899888653
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.45 E-value=0.0017 Score=64.66 Aligned_cols=199 Identities=11% Similarity=0.050 Sum_probs=122.0
Q ss_pred CcEEEEEEcCCCCE-EEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceE-EEEeCCCcEEEeecccCc
Q 009266 62 GCVNTVSFNTDGDI-LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERG 139 (538)
Q Consensus 62 ~~v~~~~~s~~g~~-l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~vwd~~~~~ 139 (538)
..+..|+|.+.+.. .++-...+.|+.+++..... ..+..........|++.+ .+..| ++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~GlAvD~--~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGMAVDW--LGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEETTSTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceEEEEe--CCCEEEEEECCCCEEEEEecCCCc
Confidence 46789999996544 45556678999999875443 333233334577889886 54444 555557889999886543
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEE-cCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcE
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 218 (538)
.... +.........|++.|....++++- +..+.|...++........+. .......|++++.++++
T Consensus 114 ~~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-----------~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 114 RQVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-----------NVGRANGLTIDYAKRRL 180 (628)
T ss_dssp CEEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----------SCSSEEEEEEETTTTEE
T ss_pred EEEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-----------CCCCcceEEEccccCEE
Confidence 2221 223345678999998654555554 235678888876554333322 11246889999975666
Q ss_pred EEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCC
Q 009266 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (538)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (538)
+++-...+.|..+++..... ...........++++.. +.++++-. .+.|...+..++.
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~----------------~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNR----------------EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEETTTTEEEEEETTSCSC----------------EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEECCCCEEEEEcCCCCce----------------EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 67767778899999865321 01111123455777765 34444433 4578888866654
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.45 E-value=6.8e-05 Score=77.05 Aligned_cols=114 Identities=15% Similarity=0.241 Sum_probs=70.3
Q ss_pred CeEEEEEe-ecCCCceEEEEeC-CC----cEEEeecccC-ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----C
Q 009266 106 NVFQAKIM-PFTDDRSIVTCAA-DG----QVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----G 173 (538)
Q Consensus 106 ~v~~l~~~-~~~~~~~l~s~~~-dg----~v~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g 173 (538)
.+...+|| | +|++||.+.. .| +|+++++.++ +.+.. .+. .....++|+|+++.++++ ..+ .
T Consensus 175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---~~~~~~~WspDg~~l~y~-~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---GTNGEIVWGPDHTSLFYV-TKDETLREN 247 (751)
T ss_dssp EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---EECSCCEECSSTTEEEEE-EECTTCCEE
T ss_pred EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---CceeeEEEecCCCEEEEE-EECCCCCCC
Confidence 67889999 9 9998885543 22 5999999887 53221 111 124578999999555444 433 2
Q ss_pred cEEEEecCCCCee--eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCc
Q 009266 174 LVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKY 236 (538)
Q Consensus 174 ~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~ 236 (538)
.|+++++.++... ..+... .......+.|+|+ +++|+... ....|+++++.++
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~---------~~~~~~~~~~SpD-g~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEH---------NPLFSAFMYKAAD-TNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECC---------CTTCEEEEEECTT-SSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEEECCCCchhcEEEEecC---------CCceEEEEEECCC-CCEEEEEecCCCCceEEEEECCCC
Confidence 5888888776532 222211 1113467899998 55555444 2346778888764
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.45 E-value=0.0011 Score=62.22 Aligned_cols=205 Identities=13% Similarity=0.020 Sum_probs=120.2
Q ss_pred CcCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCc---eeeeeccCCCCCeEEEEEeecCCCceE-EEEeCCCcEEEee
Q 009266 60 HRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQ 134 (538)
Q Consensus 60 h~~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~vwd 134 (538)
....+..|+|.+... +.++-...+.|+.+++.... ....+..........|++.+ .+..| ++-...+.|.+.+
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~--~~~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEC
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe--cCCceEEEECCCCeEEEEe
Confidence 456788999998554 44555567889999886522 12233233445678889986 44444 4545678899988
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC-CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
+........ +.........|++.|.+..++++-.. .+.|...++........+.. .....+.|+++|
T Consensus 188 ~~g~~~~~l--~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~----------~l~~P~glavd~ 255 (400)
T 3p5b_L 188 TKGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE----------NIQWPNGITLDL 255 (400)
T ss_dssp TTTCSEEEE--EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS----------SCSCEEEEEEET
T ss_pred CCCCceEEE--EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC----------CCCceEEEEEEe
Confidence 875443222 33334457899999976455555433 47888888875443322221 112468899998
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
.+++++++-...+.|..+++........ . ..........++++.. +.++++-. .+.|..++..++
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~------------~-~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 256 LSGRLYWVDSKLHSISSIDVNGGNRKTI------------L-EDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCCCEEE------------E-ECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSSC
T ss_pred CCCEEEEEECCCCEEEEEeCCCCccEEE------------E-eCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCCC
Confidence 7666666666778899999865321000 0 0001123455677743 33444433 457888886654
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.44 E-value=0.00081 Score=67.03 Aligned_cols=233 Identities=10% Similarity=-0.003 Sum_probs=140.8
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE-eCCCcEEEeecccCceeeeeeccccCCCc
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGRA 153 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~v 153 (538)
+|+.+ ....|+..++.+......+.......+..|+|.+ ....|+.+ ...+.|..+++........ +.......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~--~~~~lywtD~~~~~I~r~~~~g~~~~~v--~~~g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDV--TDNRIYWTDISLKTISRAFMNGSALEHV--VEFGLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEEC--CCCEEEEEECCCCeEEEEECCCCCcEEE--EeCCCCCc
Confidence 45444 3467999999876543333223345788999998 65565544 4578888888865432222 22223457
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE-eCCCeEEEEE
Q 009266 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA-GSDEYTRLYD 232 (538)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~iwd 232 (538)
..|++.+.+.+++++-...+.|.+.++........+. . .......|++.|..+.++++- +..+.|...+
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~---------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~ 152 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-K---------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-S---------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-C---------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence 7899987765777777778899999987554322221 1 112468999999756665554 2356777777
Q ss_pred cCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCcccccccc
Q 009266 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (538)
+..... ..+. ........|++++.+..|..+. .+.|..+++....
T Consensus 153 ~dG~~~---------------~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~----------------- 199 (628)
T 4a0p_A 153 MDGSER---------------TTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN----------------- 199 (628)
T ss_dssp TTSCSC---------------EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------
T ss_pred CCCCce---------------EEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc-----------------
Confidence 654321 0111 1234678999999877666555 4578888876421
Q ss_pred ccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEe
Q 009266 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~ 381 (538)
...+..... ....+++ .. +.++++-...+.|...+..+++....+
T Consensus 200 ----------------------~~v~~~~l~--~P~glav-~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 200 ----------------------REVIADDLP--HPFGLTQ-YQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp ----------------------CEEEEECCS--CEEEEEE-ET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ----------------------eEEeeccCC--CceEEEE-EC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 112222111 1446666 33 455555556788888887776554444
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=0.00013 Score=69.29 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=97.7
Q ss_pred cEEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-C----cEEEeecc
Q 009266 63 CVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-G----QVRHAQIL 136 (538)
Q Consensus 63 ~v~~~~~s~-~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-g----~v~vwd~~ 136 (538)
....|+|+| ++..|..+...+.|+.+++.++... .+ .........|+|++ ++++|+.+... + .+.+.+ .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~-~~~~~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~-~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TV-YSGLSKVRTICWTH--EADSMIITNDQNNNDRPNNYILT-R 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EE-ECCCSCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEE-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EE-ecCCCCcceEEEeC--CCCEEEEEeCCCCcccceEEEEe-C
Confidence 457899998 3444555444478999998876543 33 23445688999999 99866666542 2 233333 3
Q ss_pred cCceeeeeeccccCCCcEEEEEcC-CCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCC
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 215 (538)
.+.......+. .......+++.| ++ .++++-...+.|+.+++.++.......... ......|+|+|+
T Consensus 213 ~g~~~~~~~l~-~~~~p~giavdp~~g-~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~---------~~~P~gia~~pd- 280 (430)
T 3tc9_A 213 ESGFKVITELT-KGQNCNGAETHPING-ELYFNSWNAGQVFRYDFTTQETTPLFTIQD---------SGWEFHIQFHPS- 280 (430)
T ss_dssp GGTSCSEEEEE-ECSSCCCEEECTTTC-CEEEEETTTTEEEEEETTTTEEEEEEECSS---------SSCCEEEEECTT-
T ss_pred CCceeeeeeec-cCCCceEEEEeCCCC-EEEEEECCCCEEEEEECCCCcEEEEEEcCC---------CCcceeEEEcCC-
Confidence 33222111122 123467889999 55 677777778899999988765433222111 113578999998
Q ss_pred Cc-EEEEEeCCCeEEEEEcCC
Q 009266 216 AN-LFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 216 ~~-~l~~~~~dg~v~iwd~~~ 235 (538)
++ ++++-...+.|+.++...
T Consensus 281 G~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSEEEEEETTTTEEEEEEEET
T ss_pred CCEEEEEECCCCEEEEEeCCc
Confidence 56 666666788899987653
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.41 E-value=0.00027 Score=67.07 Aligned_cols=226 Identities=8% Similarity=0.076 Sum_probs=117.0
Q ss_pred CcCcEEEEEEcCCCCEEEEecCC---Ce-EEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE-eCCCcEEEee
Q 009266 60 HRGCVNTVSFNTDGDILISGSDD---RR-VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQ 134 (538)
Q Consensus 60 h~~~v~~~~~s~~g~~l~t~~~d---~~-i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~-~~dg~v~vwd 134 (538)
......+|+|+++|+++++.... .. +.......+...... .........+++.| ....|+.+ ...+.|+.++
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~-~~~~~~P~giavd~--~~G~lyv~d~~~~~V~~~d 256 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLS-LCNARGAKTCAVHP--QNGKIYYTRYHHAMISSYD 256 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEE-EEECSSBCCCEECT--TTCCEEECBTTCSEEEEEC
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccc-ccccCCCCEEEEeC--CCCeEEEEECCCCEEEEEE
Confidence 44568999999999965554421 22 333332221110111 11233456678887 55555544 4567899998
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecC--CCCee--eeeeec-ccCCCC-C---cceeee
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR--TGAAT--ELFTCR-PIDDRR-N---YMTVVN 205 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~--~~~~~~-~~~~~~-~---~~~~~~ 205 (538)
..++.........+.......|+|+|++..++++-...+.|+.+++. ++... ..+... ...... + ......
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~ 336 (433)
T 4hw6_A 257 PATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWG 336 (433)
T ss_dssp TTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSS
T ss_pred CCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcC
Confidence 87665422211112223345799999995466666777889998865 33221 122111 000000 0 001123
Q ss_pred eEEEEE---------cCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCC-CcccCCC-CccCCCccceEEEEEc-CCC
Q 009266 206 LNAIAI---------DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP-ADYFCPP-NLIGDEQVGITGLAFS-DQS 273 (538)
Q Consensus 206 v~~~~~---------~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~~~~~s-~~~ 273 (538)
...+++ .+. +.++++-...+.|+.++. .+.+......+.. ...+..- ......-.....|++. ++|
T Consensus 337 P~giav~~n~~y~~dd~~-g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g 414 (433)
T 4hw6_A 337 PNQGIFVKNEAYAGEEDE-YDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK 414 (433)
T ss_dssp EEEEEEEECGGGTTSSCC-EEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred CccEEEEccccccccCCC-CcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC
Confidence 567888 554 677777777888998885 3332211100000 0000000 0001112357899999 677
Q ss_pred CEEEEEc-CCeEEEeecc
Q 009266 274 ELLVSYN-DEFIYLFTQD 290 (538)
Q Consensus 274 ~~l~~~~-~~~i~~~d~~ 290 (538)
.++++-. .++|+.+++.
T Consensus 415 ~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 415 CFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEecC
Confidence 7666655 4488888764
No 292
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.40 E-value=1.3e-05 Score=82.37 Aligned_cols=192 Identities=11% Similarity=0.066 Sum_probs=111.0
Q ss_pred CC-CCCceEEeecc-C----CceEEeeeccC-ceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEE
Q 009266 6 NN-NNNKRARTSVD-K----ALVDVWLRELG-QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (538)
Q Consensus 6 ~~-~~~~~l~t~~~-d----~~v~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t 78 (538)
++ |++++||-+.. . .+|+++++.+| +.+.. .+. .....++|+|+|+.|+.
T Consensus 181 ~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------------------~~~---~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 181 PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------------------KVS---GTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--------------------CEE---EECSCCEECSSTTEEEE
T ss_pred ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--------------------ccc---CceeeEEEecCCCEEEE
Confidence 45 89988775432 2 35999999988 64310 111 11356889999998887
Q ss_pred ecCC-----CeEEEEECCCCcee--eeeccCCCCCeEEEEEeecCCCceEEEEeC---CCcEEEeecccCceee--eeec
Q 009266 79 GSDD-----RRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVE--TKLL 146 (538)
Q Consensus 79 ~~~d-----~~i~iw~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~--~~~~ 146 (538)
...+ ..|.++++.++... ..+..........+.|+| +|++|+..+. ...|.++++.++.... ....
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~ 315 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR 315 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEee
Confidence 7654 36888888776532 222122334567889999 9998886653 3467888887652111 1223
Q ss_pred cccCCCcEEEEEcCCCCcEEEEEcCC----CcEEEEecCCCCeeee-eeecccCCCCCcceeeeeEEEEEcCCCCcEEEE
Q 009266 147 GKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (538)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 221 (538)
.........+.|+..+ .+++....+ ..|.++++.++..... +..+. ....+..+.+.. +.++++
T Consensus 316 ~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~--------~~~~l~~~~~~~--~~lv~~ 384 (751)
T 2xe4_A 316 PREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS--------EDVFMESIAVRS--NYLVVA 384 (751)
T ss_dssp CCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC--------SSEEEEEEEECS--SEEEEE
T ss_pred cCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC--------CCcEEEEEEEEC--CEEEEE
Confidence 3344555666655444 555555443 3566677664322111 11111 112355566653 577788
Q ss_pred EeCCCeEEEEEc
Q 009266 222 AGSDEYTRLYDI 233 (538)
Q Consensus 222 ~~~dg~v~iwd~ 233 (538)
...++..+||-+
T Consensus 385 ~~~~g~~~l~~~ 396 (751)
T 2xe4_A 385 GRRAGLTRIWTM 396 (751)
T ss_dssp EEETTEEEEEEE
T ss_pred EEeCCEEEEEEE
Confidence 888886555443
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00075 Score=64.23 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=96.4
Q ss_pred cEEEEEEcCC--CCEEEEecCCCeEEEEECCCCceeeeeccC--CCCCeEEEEE-------eecCCCceEEEEeCCC---
Q 009266 63 CVNTVSFNTD--GDILISGSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKI-------MPFTDDRSIVTCAADG--- 128 (538)
Q Consensus 63 ~v~~~~~s~~--g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~--~~~~v~~l~~-------~~~~~~~~l~s~~~dg--- 128 (538)
....|+|.|. ++++++-...+.|++.|+.++........+ .......|+| ++ ++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~--~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD--EAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC--TTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC--CCCEEEEEeCCCCCc
Confidence 3568999983 444454444467888998876654332111 2235889999 99 888777766544
Q ss_pred ----cEEEeeccc-Cceee-e--eeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecC-------CCCe--------
Q 009266 129 ----QVRHAQILE-RGGVE-T--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-------TGAA-------- 185 (538)
Q Consensus 129 ----~v~vwd~~~-~~~~~-~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~-------- 185 (538)
.|.+++... +.... . ..+.. -.....++++|.+..++++-...+.|..+++. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 255554332 12110 0 11211 12456788999665788888888999999997 5553
Q ss_pred ---eeeeeecccCCCCCcceeeeeEEEEEcCCCCc-EEEEEeCCCeEEEEEcC
Q 009266 186 ---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN-LFAVAGSDEYTRLYDIR 234 (538)
Q Consensus 186 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~v~iwd~~ 234 (538)
...+.... .......|+|+|+ ++ ++++-+....|+.++..
T Consensus 297 ~g~~~~l~~~~--------~~~~p~~ia~~p~-G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 297 PNTFKQLFTIA--------DPSWEFQIFIHPT-GKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEEECS--------SSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred ccccceeEecC--------CCCCceEEEEcCC-CCEEEEEeCCCCEEEEEecC
Confidence 11111110 1123578999998 56 55555677888886643
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.32 E-value=0.0036 Score=62.35 Aligned_cols=200 Identities=12% Similarity=0.046 Sum_probs=112.9
Q ss_pred CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEE
Q 009266 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 230 (538)
..+..|+|.+.+..++++-...+.|+.+++........+.. .......+++.+.+++++++-+..+.|.+
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~----------~~~~p~GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA----------QIAHPDGIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC----------CCCCcCceEEecccCcEEEEeCCCCcEEE
Confidence 45778999986646666666778899998876443322221 11245678888765678788778889999
Q ss_pred EEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC-CCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccc
Q 009266 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (538)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (538)
.++..... ..+....-.....|++.|. |.++.+-. ...|...++...
T Consensus 419 ~~~~G~~~---------------~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~--------------- 468 (619)
T 3s94_A 419 TRLNGTMR---------------KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS--------------- 468 (619)
T ss_dssp EETTSCSC---------------EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------------
T ss_pred EeCCCCeE---------------EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC---------------
Confidence 98865321 1111122356789999996 54444432 235666655421
Q ss_pred cccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEe-ccCCeEEEeeccCcceeEEeecCcc
Q 009266 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRH 386 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~g-s~dg~i~iwd~~~~~~~~~~~~h~~ 386 (538)
....+... .-.....+++ ++.+..|+.+ +..++|..+++........+...-.
T Consensus 469 ------------------------~~~~l~~~-~l~~P~Glal-D~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~ 522 (619)
T 3s94_A 469 ------------------------DRVVLVNT-SLGWPNGLAL-DYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIP 522 (619)
T ss_dssp ------------------------SCEEEECS-SCSCEEEEEE-ETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCC
T ss_pred ------------------------ccEEEEeC-CCCCCeeeEE-cccCCEEEEEECCCCEEEEEecCCCceEEEeccCCC
Confidence 11122111 1112567887 8765555544 4557898898754332222222222
Q ss_pred eeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 387 VVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
...+|+...+ .+..+-...+.|...+..++
T Consensus 523 ~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 523 HIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp SSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred CcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 3445565433 34444444556666665554
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.28 E-value=0.001 Score=67.93 Aligned_cols=207 Identities=13% Similarity=0.020 Sum_probs=121.2
Q ss_pred CcCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCCc---eeeeeccCCCCCeEEEEEeecCCCceE-EEEeCCCcEEEee
Q 009266 60 HRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQ 134 (538)
Q Consensus 60 h~~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~l-~s~~~dg~v~vwd 134 (538)
....+.+|+|.+. +.++++-...+.|+.+++.... ....+..........|++.+ .+..| ++-...+.|.+.+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~--~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee--cCCcEEEEecCCCeEEEEe
Confidence 4566789999985 4555566667889999887531 12223233445677899987 55444 4555678999999
Q ss_pred cccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
+........ +.........|++.|.+..++++-... +.|.+.++........+. . .....+.|++++
T Consensus 500 ldG~~~~~l--~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~---------~l~~P~GLavD~ 567 (791)
T 3m0c_C 500 TKGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-E---------NIQWPNGITLDL 567 (791)
T ss_dssp TTSSSEEEE--EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-S---------SCSCEEEEEEET
T ss_pred CCCCeEEEE--EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-C---------CCCCceEEEEec
Confidence 875443222 333445688999999764555554333 778888887544433322 1 112468899998
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCC
Q 009266 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (538)
Q Consensus 214 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (538)
.+++++++-...+.|..+++........ . ..........+|++..+ +++++-. .+.|...+..++
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~~~v------------~-~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNRKTI------------L-EDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEE------------E-ECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTC
T ss_pred CCCeEEEEeCCCCcEEEEecCCCceEEE------------e-cCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCC
Confidence 7666666666677899998865321100 0 00011223456666433 3333333 457888877665
Q ss_pred CC
Q 009266 293 LG 294 (538)
Q Consensus 293 ~~ 294 (538)
..
T Consensus 634 ~~ 635 (791)
T 3m0c_C 634 SD 635 (791)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.22 E-value=0.0023 Score=56.24 Aligned_cols=271 Identities=11% Similarity=0.114 Sum_probs=158.1
Q ss_pred CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
...+|.|-|+..+..+.+.... --+...+| ..+.||.-. ..++.|+++.+...+....+. ..|.-=.|-.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~----AdsAIMnP--~~~ViALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis 116 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS 116 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECC----CSEEEECS--SSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCEEEEEECS
T ss_pred CCCEEEEEECCCCCCccccccc----cceeeeCC--CccEEEEec-CCeEEEechHHhhhhcceecC---CccEEEEecC
Confidence 3347899999887654332112 22334577 777776665 689999999998877764443 4666666765
Q ss_pred CCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe------CCCeEEEEEc
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG------SDEYTRLYDI 233 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~ 233 (538)
.. .|+..+. ..|+.|++.. ..+.+.+..+... ....|..-..+++...++++|- -.|.+.+|..
T Consensus 117 ~~--~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 187 (365)
T 2xzh_A 117 LN--TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 187 (365)
T ss_dssp SS--EEEEEES-SEEEEEESSTTCCCEEEEECCGGG------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET
T ss_pred CC--eEEEEcC-CcEEEEcccCCCCCceeeecchhc------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEee
Confidence 54 3444443 5799999975 3455555544432 2346778888887444444443 2367889988
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC---CCEEEEEcC----CeEEEeeccCCC-CCCCCCCCCccc
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYND----EFIYLFTQDMGL-GPNPPPSSPVST 305 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~----~~i~~~d~~~~~-~~~~~~~~~~~~ 305 (538)
..+. ...+.+|......+.+..+ .++++.+.. +++++.++.... ....+.
T Consensus 188 er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~------ 245 (365)
T 2xzh_A 188 DRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP------ 245 (365)
T ss_dssp TTTE----------------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC------
T ss_pred cccc----------------cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc------
Confidence 7653 2333344433333332211 124444432 478888885431 111111
Q ss_pred cccccccCCCCccccCCCCCCCCcccCCce-eeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecC
Q 009266 306 RSEASEMGSDHTSAASPSTANTDVRIAPQV-YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h 384 (538)
.+.... +..........++.. |+.-..+..-+.-|.|++||+.++.++..-+-.
T Consensus 246 ------------------------kk~vdi~fppea~~DFPVamqv-s~kygviyviTK~G~ihlyDleTgt~i~~nrIS 300 (365)
T 2xzh_A 246 ------------------------KKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 300 (365)
T ss_dssp ------------------------CEEEEECCCTTCTTCCEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ------------------------cccceeeCCccccCCceEEEEe-cccCCEEEEEeCCcEEEEEEcccCcEEEEeccC
Confidence 000000 111111112445666 777778888888999999999999999777666
Q ss_pred cceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 385 RHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
...|...+......=++.....|.|.--.+...
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 666665555544444555556776666555544
No 297
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.12 E-value=0.0087 Score=63.99 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=72.6
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCC----CceEEEEeC-CCcEEEeecc
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD----DRSIVTCAA-DGQVRHAQIL 136 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----~~~l~s~~~-dg~v~vwd~~ 136 (538)
..|.+.+.+. .+++.++ .+.|.++.+..++........-...|.|+++.|... +.+++.|.. +++|+|+.+.
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 4577777653 4565554 578888887765432221122355899999987322 468999996 9999999998
Q ss_pred cCceeeeeeccccCCCcEEEEEcC-CCCcEEEEEcCCCcEEEEecC
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLR 181 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~ 181 (538)
..+.+....+.. .....++.+.. .+..+|..|-.+|.+..+.+.
T Consensus 591 ~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 591 SFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 766554444432 12334443331 233578889999987666554
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.08 E-value=1.8e-05 Score=80.16 Aligned_cols=206 Identities=10% Similarity=0.000 Sum_probs=115.0
Q ss_pred CcEEEEEEcCCCCEEEEe-cCCCeEEEEECCC---CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeeccc
Q 009266 62 GCVNTVSFNTDGDILISG-SDDRRVILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~-~~d~~i~iw~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~ 137 (538)
..+..|+|.+.+..|..+ ...+.|+.+++.+ +.....+..........|++.+. .+.++++-...+.|.++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~-~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS-SSBCEECCTTTSCEEEEBSSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee-CCcEEEEeccCCeEEEEecCC
Confidence 456789999866655554 4567899999875 12222222222234566788751 344555545678899999875
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
...... +.........|++.|.+..++++-... +.|.++++...... .+... .....+.|+|+|.++
T Consensus 485 ~~~~~l--~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~~---------~l~~PnGlavd~~~~ 552 (699)
T 1n7d_A 485 VKRKTL--FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTE---------NIQWPNGITLDLLSG 552 (699)
T ss_dssp CCEEEE--CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESCS---------SCSSCCCEEECTTTC
T ss_pred CceEEE--EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEeC---------CCCCccEEEEeccCC
Confidence 433222 222334567889999764555544333 67888777543222 22111 111356899999867
Q ss_pred cEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-CCeEEEeeccCCCC
Q 009266 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (538)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~ 294 (538)
+++++-...+.|..+++........ .. ..........|++..+ .++++.. .+.|..++..++..
T Consensus 553 ~LY~aD~~~~~I~~~d~dG~~~~~~------------~~-~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 553 RLYWVDSKLHSISSIDVNGGNRKTI------------LE-DEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CEEEEETTTTEEEEECSSSSCCEEE------------CC-CSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred EEEEEecCCCeEEEEccCCCceEEE------------Ee-cCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 7777777788999999864321100 00 0001122344555554 3333333 45898888765543
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.05 E-value=0.0035 Score=57.72 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=124.2
Q ss_pred CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeec---cccCCCcEEEEEcCC---CCcEEEEEcCC-----C
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---GKHQGRAHKLAIEPG---SPHVFYTCGED-----G 173 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~s~~~d-----g 173 (538)
.....|+|.| +|.+++ +...|.|++++ .+.......+ .........|+|+|+ +..++++-... +
T Consensus 31 ~~P~~ia~~p--dG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLP--DGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECT--TSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcC--CCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3567899999 988554 45669999988 3332211111 122356789999998 43444444432 5
Q ss_pred cEEEEecCCCCee---eeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC-------------CeEEEEEcCCcc
Q 009266 174 LVQHFDLRTGAAT---ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-------------EYTRLYDIRKYK 237 (538)
Q Consensus 174 ~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~ 237 (538)
.|..|++...... ..+...+...... | ....++|.|+ +.++++.+.. |.|..++... +
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~--h--~~~~l~~~pd-G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~ 179 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGL--H--SGGRIAFGPD-GMLYVTTGEVYERELAQDLASLGGKILRLTPEG-E 179 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCC--C--CCCCEEECTT-SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-S
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCC--c--CCceEEECCC-CCEEEEECCCCCCccccCCCCCceEEEEEcCCC-C
Confidence 6888887644221 1111111000001 1 2368999998 5665554321 4455454432 1
Q ss_pred ccCCCCCCCCCccc--CCCCccCCCccceEEEEEcC-CCCEEEEEcC-CeE------EEeeccCCCCCCCCCCCCccccc
Q 009266 238 WDGSTDFGQPADYF--CPPNLIGDEQVGITGLAFSD-QSELLVSYND-EFI------YLFTQDMGLGPNPPPSSPVSTRS 307 (538)
Q Consensus 238 ~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~-~~i------~~~d~~~~~~~~~~~~~~~~~~~ 307 (538)
.. ...|.... ...............++|+| +|+++++-.. +.+ .+.-+..+...-- .
T Consensus 180 ~p----~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGw---------p 246 (352)
T 2ism_A 180 PA----PGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGW---------P 246 (352)
T ss_dssp BC----TTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCT---------T
T ss_pred CC----CCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCC---------C
Confidence 10 00110000 00011111123467889999 6776665432 232 1222222110000 0
Q ss_pred cccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcce------eEEe
Q 009266 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL------IRVI 381 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~------~~~~ 381 (538)
.. ... ........+...+..|.. ...++| .+|+++++.-..+.|...++..... ...+
T Consensus 247 ~~----~g~-------~~~~~~~~p~~~~~~~~a---p~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 310 (352)
T 2ism_A 247 RV----VGR-------GNDPRYRDPLYFWPQGFP---PGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA 310 (352)
T ss_dssp TC----CSC-------CCCTTSCCCSEECTTCCC---EEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred cc----cCC-------CCCCCCcCCeEecCCCCC---CcceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchhee
Confidence 00 000 000000112222322222 456776 3677777777778888887764431 1222
Q ss_pred ecCcceeeEEeecCCCCeEEEee
Q 009266 382 EADRHVVNCIEPHPHSTVLASSG 404 (538)
Q Consensus 382 ~~h~~~v~~~~~s~~~~~l~s~~ 404 (538)
......+..+++.|+|.++++..
T Consensus 311 ~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 311 LSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EESSCCEEEEEECTTSCEEEEEC
T ss_pred cccCCCeeEEEECCCCcEEEEEe
Confidence 22235789999999998666653
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0014 Score=58.91 Aligned_cols=192 Identities=10% Similarity=0.136 Sum_probs=111.3
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeec--CCCc---eEEEEe-C--CCcEEEeecc--cCceee
Q 009266 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF--TDDR---SIVTCA-A--DGQVRHAQIL--ERGGVE 142 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~---~l~s~~-~--dg~v~vwd~~--~~~~~~ 142 (538)
..+++.....+-+.+|++ +|+.+..+ .. +.++.+..-|. -.|+ ++++.. . .++|++|.+. ++. +.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 456666667788999999 78887776 32 56777776660 0222 233333 3 5789999773 332 22
Q ss_pred ee-ec--c--ccCCCcEEEEE--cCC-CCcEEEEEcCCCcEEEEecC---CC----CeeeeeeecccCCCCCcceeeeeE
Q 009266 143 TK-LL--G--KHQGRAHKLAI--EPG-SPHVFYTCGEDGLVQHFDLR---TG----AATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 143 ~~-~~--~--~~~~~v~~~~~--~~~-~~~~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
.. .. . .-...+..+++ +|. +..++++...+|.+..|.+. .+ +.+..+.. ...+.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----------gsq~E 183 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----------NSQTE 183 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----------SSCEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----------CCCcc
Confidence 21 00 1 11155667777 674 43467888888999999883 22 33344432 22577
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCc-cCCCccceEEEEE--cCCCC-EEEEEc--C
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAF--SDQSE-LLVSYN--D 281 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--s~~~~-~l~~~~--~ 281 (538)
.+...+. ...|+.+-++..|..|+..-..-... .. .... ..+-...+..|++ .++++ +|++++ +
T Consensus 184 gcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~~----~~-----v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 184 GMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSNG----TV-----IDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EEEEETT-TTEEEEEETTTEEEEEECSTTSCSCC----EE-----EEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred eEEEcCC-CCeEEEecccceEEEEeCCcCCCCCc----eE-----EEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 8888886 56788888887666666442110000 00 0000 1112236788888 45555 555555 4
Q ss_pred CeEEEeecc
Q 009266 282 EFIYLFTQD 290 (538)
Q Consensus 282 ~~i~~~d~~ 290 (538)
+.+.+|+..
T Consensus 254 ~s~~Vydr~ 262 (355)
T 3amr_A 254 SSYAIYDRQ 262 (355)
T ss_dssp TEEEEEESS
T ss_pred CEEEEEECC
Confidence 589999986
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.00 E-value=0.0093 Score=54.84 Aligned_cols=275 Identities=13% Similarity=0.135 Sum_probs=128.3
Q ss_pred CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee-ee----eccccCCCcEEEEEcCC---CCcEEEEEcC-----
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TK----LLGKHQGRAHKLAIEPG---SPHVFYTCGE----- 171 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~----~~~~~~~~v~~~~~~~~---~~~~l~s~~~----- 171 (538)
.....|+|.| +|++|+++...|.|++++.. +.... .. ...........|+|+|+ +..+.++-..
T Consensus 18 ~~P~~i~~~p--dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLP--DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECS--TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcC--CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 3568899999 99845555667999988743 22111 00 01112345689999995 4344444332
Q ss_pred --CCcEEEEecCCCC--e--eee-eeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC-------------CeEEEE
Q 009266 172 --DGLVQHFDLRTGA--A--TEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-------------EYTRLY 231 (538)
Q Consensus 172 --dg~i~iwd~~~~~--~--~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------------g~v~iw 231 (538)
...|..|++.... . ... +...+...... | ....|+|.|+ +.++++.+.. |.|.-+
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~--h--~~~~l~~~pd-G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri 169 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGN--H--FGGRLVFDGK-GYLFIALGENNQRPTAQDLDKLQGKLVRL 169 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSS--C--CCCCEEECSS-SEEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCc--c--cCccEEECCC-CcEEEEECCCCCCCccCCCCCCCeEEEEE
Confidence 2356666665331 1 111 11111000011 1 2357999998 5665554332 456555
Q ss_pred EcCCccccCCCCCCCCCccc--CCCCccCCCccceEEEEEcC-CCCEEEEEcCC--eEEEeeccCCCCCCCCCCCCcccc
Q 009266 232 DIRKYKWDGSTDFGQPADYF--CPPNLIGDEQVGITGLAFSD-QSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTR 306 (538)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~ 306 (538)
+.... .. .+.|.... ....+..........++|.| .|+++++-... .=.|.-+..+...-- |....
T Consensus 170 ~~dG~-~p----~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGw----p~~~~ 240 (353)
T 2g8s_A 170 TDQGE-IP----DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGW----PLATW 240 (353)
T ss_dssp ETTSC-CC----TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCT----TTBCS
T ss_pred CCCCC-CC----CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCC----CCccC
Confidence 54321 10 01111000 00111111224578899999 67766654321 122222222211000 00000
Q ss_pred ccccccCCCCccccCC-CCCCCCcccCCceeeccccceeeeEEEEec------CCCcEEEEeccCCeEEEeeccCcceeE
Q 009266 307 SEASEMGSDHTSAASP-STANTDVRIAPQVYKGHRNCVTVKGVNFFG------PKCEYVVSGSDCGRIFIWKKKGGELIR 379 (538)
Q Consensus 307 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s------~~~~~l~~gs~dg~i~iwd~~~~~~~~ 379 (538)
.. .+ .+..+... .........+...+..|.. ...+.|.. .+|+++++.-..+.|...++..++.+.
T Consensus 241 ~~--~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~a---p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~ 313 (353)
T 2g8s_A 241 GI--NY--SGFKIPEAKGEIVAGTEQPVFYWKDSPA---VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTE 313 (353)
T ss_dssp SB--CT--TSSCCTTCCBSSCTTSCCCSEEESSCCC---EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE
T ss_pred CC--CC--CCCccCcccCCCCCCccCCeEEeCCCcC---cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEee
Confidence 00 00 00000000 0000000112223333332 56677632 257888887778889888887665443
Q ss_pred E--e-ecCcceeeEEeecCCCCeEEEe
Q 009266 380 V--I-EADRHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 380 ~--~-~~h~~~v~~~~~s~~~~~l~s~ 403 (538)
. + ......+..|++.|+|.++++.
T Consensus 314 ~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 314 DGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred eEEcccCCCCceeEEEECCCCcEEEEE
Confidence 2 2 1223478999999999966654
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.93 E-value=0.001 Score=59.15 Aligned_cols=171 Identities=10% Similarity=0.087 Sum_probs=109.1
Q ss_pred EEcCCcCcEEEEEEcCCCCEEEEe-cCCCeEEEEECCCCceeeeeccC----CC--CCeEEEEE---eecCCCceEEEEe
Q 009266 56 KLDKHRGCVNTVSFNTDGDILISG-SDDRRVILWDWKTERVKLSFHSG----HN--DNVFQAKI---MPFTDDRSIVTCA 125 (538)
Q Consensus 56 ~~~~h~~~v~~~~~s~~g~~l~t~-~~d~~i~iw~~~~~~~~~~~~~~----~~--~~v~~l~~---~~~~~~~~l~s~~ 125 (538)
.+....-.--+++|.+....|..+ -..++|..|+...+......... .. ..+..|.| .| .+.++++..
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~ 84 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMK 84 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEE
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEc
Confidence 344455556788998855455444 47899999998765443332222 11 14678999 57 777777544
Q ss_pred -------------CCCcEEEeecc---cCceeeeeeccccC-----------CCcEEEEEcCCCCcEEEEEcCC-CcEEE
Q 009266 126 -------------ADGQVRHAQIL---ERGGVETKLLGKHQ-----------GRAHKLAIEPGSPHVFYTCGED-GLVQH 177 (538)
Q Consensus 126 -------------~dg~v~vwd~~---~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~l~s~~~d-g~i~i 177 (538)
.+..|..+|+. +++.+....+.... ..+..++..++| +..++++.. +.|..
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~r 163 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIAR 163 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEE
Confidence 25779999998 67665443343221 247899999999 677878877 88777
Q ss_pred EecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 009266 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
++.... .+..+....... ......+.|+++|+ +++|++....|.|..+|+..
T Consensus 164 V~pdG~-~~~~~~~~~~~~----~~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 164 VSADGK-TVSTFAWESGNG----GQRPGYSGITFDPH-SNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECTTSC-CEEEEEECCCCS----SSCCSCSEEEEETT-TTEEEEESSSSSEEEEECSS
T ss_pred EeCCCC-EEeeeeecCCCc----ccccCcceEEEeCC-CCEEEEEcCCCeEEEEcCCC
Confidence 776544 232222111100 01224678999998 56666666699999999873
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.92 E-value=0.012 Score=53.45 Aligned_cols=190 Identities=13% Similarity=0.096 Sum_probs=100.6
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecc--CCCCCeEEEEEeecCCCceEEEEeCCCcE-EEeeccc
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS--GHNDNVFQAKIMPFTDDRSIVTCAADGQV-RHAQILE 137 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~l~s~~~dg~v-~vwd~~~ 137 (538)
...+.+|+|.| +..++. +..+.|.. ....|+.-..+.. .+...+..|.+.+ ++..++++. .|.| +-.| .
T Consensus 79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~g~v~~S~D--g 150 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG--NGSAEMITN-VGAIYRTKD--S 150 (327)
T ss_dssp CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE--TTEEEEEET-TCCEEEESS--T
T ss_pred CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC--CCCEEEEeC-CccEEEEcC--C
Confidence 45688999987 444444 45564443 3333443222211 2345678888877 776666554 5544 3222 1
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
++. .......+...+..+++.|++ .+++++...+..+-+|- .+..-..+... ....+..+++.++ +.
T Consensus 151 G~t-W~~~~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~-gG~tW~~~~~~---------~~~~~~~~~~~~~-g~ 217 (327)
T 2xbg_A 151 GKN-WQALVQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEP-GQTAWEPHNRT---------TSRRLHNMGFTPD-GR 217 (327)
T ss_dssp TSS-EEEEECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECT-TCSSCEEEECC---------SSSCEEEEEECTT-SC
T ss_pred CCC-CEEeecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCC-CCCceeECCCC---------CCCccceeEECCC-CC
Confidence 221 111133445678899999987 56665544333333332 12222222111 1225788889887 45
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCcc-CCCccceEEEEEcCCCCEEEEEcCCeE
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-GDEQVGITGLAFSDQSELLVSYNDEFI 284 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~i 284 (538)
++ .++.+|.+++.....++.-.. .... ......+.++++.+++.+++++..+.|
T Consensus 218 ~~-~~~~~G~~~~s~~D~G~tW~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i 272 (327)
T 2xbg_A 218 LW-MIVNGGKIAFSDPDNSENWGE------------LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL 272 (327)
T ss_dssp EE-EEETTTEEEEEETTEEEEECC------------CBCTTSSCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred EE-EEeCCceEEEecCCCCCeeEe------------ccCCcccCCcceEEEEecCCCEEEEEeCCCeE
Confidence 54 455678777764221211000 0000 011235888999998888888887766
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.86 E-value=0.016 Score=53.15 Aligned_cols=270 Identities=11% Similarity=0.116 Sum_probs=161.2
Q ss_pred CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcC
Q 009266 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (538)
....|.|-|+..+..+.+... .--+...+| ..+.||.-. ..++.|+++.+...+....+. ..|.-=.|-.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP--~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis 115 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPI----SADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS 115 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEEC----CCSEEEECS--SSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEE
T ss_pred CCCeEEEEECCCCCcceeccc----ccceeeeCC--CCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecC
Confidence 344789999988765433211 122345677 667776665 689999999998877764432 3566666665
Q ss_pred CCCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe------CCCeEEEEEc
Q 009266 161 GSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG------SDEYTRLYDI 233 (538)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~ 233 (538)
.. .|+..+. ..|+.|++.. ..+.+.+..+... ....|..-..+++...++++|- -.|.+.+|..
T Consensus 116 ~~--~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 186 (494)
T 1bpo_A 116 LN--TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (494)
T ss_dssp TT--EEEEECS-SEEEEEESSSSCCCEEEEECCGGG------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred CC--eEEEEcC-CeeEEecccCCCCchhheecchhc------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec
Confidence 44 4454443 5799999974 3455555544432 2346788888887444444443 2467889988
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC---CEEEEEcC----CeEEEeeccCCC-CCCCCCCCCccc
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS---ELLVSYND----EFIYLFTQDMGL-GPNPPPSSPVST 305 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~----~~i~~~d~~~~~-~~~~~~~~~~~~ 305 (538)
..+. ...+.+|......+.+..+. ++++.+.. ++++|.++.... ....+.
T Consensus 187 er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~------ 244 (494)
T 1bpo_A 187 DRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP------ 244 (494)
T ss_dssp TTCC----------------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC------
T ss_pred cccc----------------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc------
Confidence 7653 33444454444444443221 24444432 478888885431 111111
Q ss_pred cccccccCCCCccccCCCCCCCCcccCCc-eeec-cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeec
Q 009266 306 RSEASEMGSDHTSAASPSTANTDVRIAPQ-VYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 383 (538)
.+... .+.. .... ...++.. |+.-..+..-+.-|.|++||+.++.++..-+-
T Consensus 245 ------------------------kk~vdv~fppe~~~D-FPvamqv-s~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 245 ------------------------KKAVDVFFPPEAQND-FPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp ------------------------CEEEECCCCTTSTTC-CEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ------------------------ceeeeeeCCcccccC-ceeEEEe-cccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 00000 0111 1111 2345665 77777888888999999999999999977766
Q ss_pred CcceeeEEeecCCCCeEEEeecCCceEEecCCCC
Q 009266 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (538)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~ 417 (538)
....|...+......=++.....|.|.--.+...
T Consensus 299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred cCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 6667766666555555555557777766655543
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.82 E-value=0.004 Score=55.89 Aligned_cols=189 Identities=13% Similarity=0.216 Sum_probs=111.4
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCC----CC---E-EEEe
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GD---I-LISG 79 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----g~---~-l~t~ 79 (538)
|...++++....+-+.+||+ +|+.++ .+.. +.++.+.+-|. |+ + +++.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~---------------------~~~~--g~~nnVD~r~~~~l~g~~~dla~as~ 93 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLH---------------------SYNT--GKLNNVDIRYDFPLNGKKVDIAAASN 93 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEE---------------------EECC--SCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEE---------------------EccC--CCcccEEEecccccCCceEeEEEEeC
Confidence 34556777777889999999 588762 3332 45666666552 22 2 3333
Q ss_pred cC--CCeEEEEECC--CCceeeeecc---C--CC-CCeEEEEE--eecCCCc-eEEEEeCCCcEEEeeccc-------Cc
Q 009266 80 SD--DRRVILWDWK--TERVKLSFHS---G--HN-DNVFQAKI--MPFTDDR-SIVTCAADGQVRHAQILE-------RG 139 (538)
Q Consensus 80 ~~--d~~i~iw~~~--~~~~~~~~~~---~--~~-~~v~~l~~--~~~~~~~-~l~s~~~dg~v~vwd~~~-------~~ 139 (538)
-. .++|++|++. ++. +..+.. . .. ..++.+|+ +|. .+. ++++...+|.+..|.+.. .+
T Consensus 94 R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~-~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 94 RSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQK-TGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp CSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTT-TCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred CCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCC-CCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 33 5789999773 333 333311 0 11 56777887 551 233 688888899999999843 22
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCC-----CCeeeeeeecccCCCCCcceeeeeEEEEE--c
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-----GAATELFTCRPIDDRRNYMTVVNLNAIAI--D 212 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~ 212 (538)
.+.. +. ....+-.|.+.+.. ..|+.+-.+.-|..|+.+. ++.+..+. ... -...+..|++ .
T Consensus 172 lVR~--f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~---~g~-----l~aDvEGLai~~~ 239 (355)
T 3amr_A 172 KVRA--FK-MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD---GRH-----LTRDIEGLTIYYA 239 (355)
T ss_dssp EEEE--EE-CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBS---SSS-----BCSCEEEEEEEEC
T ss_pred EEEE--ec-CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEec---CCc-----cccCcceEEEEec
Confidence 2333 32 23467788888877 5778888886677777542 22222221 100 1124666776 4
Q ss_pred CCCCcEEEEEe-CCCeEEEEEcC
Q 009266 213 PRNANLFAVAG-SDEYTRLYDIR 234 (538)
Q Consensus 213 ~~~~~~l~~~~-~dg~v~iwd~~ 234 (538)
+++..+|++++ .+.++.+|+..
T Consensus 240 ~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 240 ADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp GGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCCEEEEEEcCCCCEEEEEECC
Confidence 43222555555 67799999986
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.78 E-value=0.0025 Score=56.65 Aligned_cols=164 Identities=12% Similarity=0.048 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCcc--CCCccceEEEEE---cCCCCEEEEEc
Q 009266 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI--GDEQVGITGLAF---SDQSELLVSYN 280 (538)
Q Consensus 206 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~---s~~~~~l~~~~ 280 (538)
..+++|++.++.++++.-..++|..|+...+..... . ..... ......+..|.| .|.++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~---------~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-V---------IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-C---------CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-e---------cCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 467899887566666666899999999875432111 0 01111 112235689999 68888887543
Q ss_pred --------------CCeEEEeecc---CCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccc---
Q 009266 281 --------------DEFIYLFTQD---MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR--- 340 (538)
Q Consensus 281 --------------~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 340 (538)
...|..||+. +++.... ..+....
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~------------------------------------~dL~~~~~~~ 128 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS------------------------------------VNFEKVQDEF 128 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE------------------------------------EESHHHHHHH
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEE------------------------------------ecCccccccc
Confidence 3468889987 4322111 0111100
Q ss_pred ------cceeeeEEEEecCCCcEEEEeccC-CeEEEeeccCcceeEEeecC------cceeeEEeecCCCCeEEEeecCC
Q 009266 341 ------NCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVIEAD------RHVVNCIEPHPHSTVLASSGIES 407 (538)
Q Consensus 341 ------~~~~i~~v~~~s~~~~~l~~gs~d-g~i~iwd~~~~~~~~~~~~h------~~~v~~~~~s~~~~~l~s~~~dg 407 (538)
.......++. .++|+..++++.- +.|..++.. |+.+..+... ....+.|+++|++++|++....|
T Consensus 129 ~~~~g~~~~~~nDvav-D~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g 206 (334)
T 2p9w_A 129 EKKAGKRPFGVVQSAQ-DRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR 206 (334)
T ss_dssp HHHHSSCCEEEEEEEE-CTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSS
T ss_pred cccccccccCCceeEE-CCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCC
Confidence 1113778888 9999999988888 887777754 3333333211 12367999999999888887799
Q ss_pred ceEEecCCCC
Q 009266 408 DIKILTPNAA 417 (538)
Q Consensus 408 ~v~vw~~~~~ 417 (538)
.|..+++...
T Consensus 207 ~L~~fD~~~p 216 (334)
T 2p9w_A 207 ALTAFDVSKP 216 (334)
T ss_dssp SEEEEECSSS
T ss_pred eEEEEcCCCC
Confidence 9999998743
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.75 E-value=0.025 Score=51.96 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=61.4
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--eeee--ccCCCCCeEEEEEeecCC---CceEEEEeC-C-----C
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSF--HSGHNDNVFQAKIMPFTD---DRSIVTCAA-D-----G 128 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~--~~~~--~~~~~~~v~~l~~~~~~~---~~~l~s~~~-d-----g 128 (538)
..-..|+|.|+|+++++- ..+.|++++ .++. +..+ ..........|+|+| + +..|+.+.. . +
T Consensus 31 ~~P~~ia~~pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEEEecCCCCCcc
Confidence 456799999999966664 458999998 4442 1111 112245688999999 7 455554443 2 5
Q ss_pred cEEEeecccCce----eeeeecc---ccCCCcEEEEEcCCCCcEEEEEc
Q 009266 129 QVRHAQILERGG----VETKLLG---KHQGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 129 ~v~vwd~~~~~~----~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~ 170 (538)
.|..|++..... .....+. ........|+|.|++ .++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence 677777664311 1111122 112234689999999 5666543
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.72 E-value=0.028 Score=51.66 Aligned_cols=254 Identities=11% Similarity=0.045 Sum_probs=124.4
Q ss_pred CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeec---cccCCCcEEEEEcCC---CCcEEEEEcC---C---
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---GKHQGRAHKLAIEPG---SPHVFYTCGE---D--- 172 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~s~~~---d--- 172 (538)
.....|+|.| +|.+++ +...|.|++++. .+. .....+ .........|+|+|+ +..++++-+. +
T Consensus 29 ~~P~~ia~~p--dG~l~V-~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLG--GGRYLV-TERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEE--TTEEEE-EETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcC--CCeEEE-EeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 4578899999 987554 455699998873 333 111111 122346789999997 4344444332 2
Q ss_pred -CcEEEEecCCC--Ce---eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC-------------CeEEEEEc
Q 009266 173 -GLVQHFDLRTG--AA---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-------------EYTRLYDI 233 (538)
Q Consensus 173 -g~i~iwd~~~~--~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------------g~v~iwd~ 233 (538)
..|..|++... .. ...+..... ... | ....|+|.|+ +.++++.+.. |.|..++.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~--~~~--h--~~~~l~~~pD-G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~ 176 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPG--AYI--H--NGGRIRFGPD-GMLYITTGDAADPRLAQDLSSLAGKILRVDE 176 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEEC--CSS--C--CCCCEEECTT-SCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCC--CCC--c--CCceEEECCC-CcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence 56777776644 11 111111110 001 1 2467999998 5666654321 34444443
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC-CCCEEEEEcCC----eEEEeeccCCCCC-CCCCCCCccccc
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYNDE----FIYLFTQDMGLGP-NPPPSSPVSTRS 307 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~----~i~~~d~~~~~~~-~~~~~~~~~~~~ 307 (538)
.. +. ....|.. ...+..........++|+| .|+++++-... .|.+.. .+... .......
T Consensus 177 dG-~~----p~~npf~---~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~----- 241 (354)
T 3a9g_A 177 EG-RP----PADNPFP---NSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGK----- 241 (354)
T ss_dssp TS-CC----CTTSSST---TCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSC-----
T ss_pred CC-CC----CCCCCCC---CCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCC-----
Confidence 21 10 0001100 0111111123456899999 67766664421 243332 11100 0000000
Q ss_pred cccccCCCCccccCCCCCCCCcccCCcee-eccccceeeeEEEEe------cCCCcEEEEeccCCeEEEeeccCc-cee-
Q 009266 308 EASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFF------GPKCEYVVSGSDCGRIFIWKKKGG-ELI- 378 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~------s~~~~~l~~gs~dg~i~iwd~~~~-~~~- 378 (538)
.. .. ....+...+ ..+. ....++|+ ..+|+++++.-..+.|...++... +..
T Consensus 242 ---------~~-----~~--~~~~p~~~~~~~~~---ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~ 302 (354)
T 3a9g_A 242 ---------AG-----RG--EFVDPVIDTGSETW---APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK 302 (354)
T ss_dssp ---------CC-----CT--TSCCCSEECTTCCC---CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE
T ss_pred ---------CC-----CC--CCcCCEeecCCCCc---CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc
Confidence 00 00 000111222 1122 25566662 146778887777788988888753 332
Q ss_pred -EEee-cCcceeeEEeecCCCCeEEEee
Q 009266 379 -RVIE-ADRHVVNCIEPHPHSTVLASSG 404 (538)
Q Consensus 379 -~~~~-~h~~~v~~~~~s~~~~~l~s~~ 404 (538)
..+. .....+..+++.|+|.++++..
T Consensus 303 ~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 303 ISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 2222 2235789999999998666654
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.68 E-value=0.0089 Score=54.42 Aligned_cols=140 Identities=9% Similarity=0.095 Sum_probs=76.1
Q ss_pred CCCcEEEeecccC--ceeeeeeccc-----cCCCcEEEEEcC--CCC-cEEEEEcC--CCcEEEEecCCCCee-eeeeec
Q 009266 126 ADGQVRHAQILER--GGVETKLLGK-----HQGRAHKLAIEP--GSP-HVFYTCGE--DGLVQHFDLRTGAAT-ELFTCR 192 (538)
Q Consensus 126 ~dg~v~vwd~~~~--~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~~l~s~~~--dg~i~iwd~~~~~~~-~~~~~~ 192 (538)
.+|.|.++++.+. +... ..+.+ ..-....|.+.+ ++. +++++-.. ..+|.+|.+...... ..+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~-l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSE-LEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEE-CEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEE-EEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 5788999998743 2222 12222 234566777765 343 24444333 467888877654322 222211
Q ss_pred ccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC-----------------CCeEEEEEcCCccccCCCCCCCCCcccCCCC
Q 009266 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-----------------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (538)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
... .....+.+++.++ +.+.++... .|.|..++.. + ..
T Consensus 160 ~g~------~~~~pND~~v~~~-G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~----------------~~ 214 (355)
T 3sre_A 160 RHK------LLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D----------------VR 214 (355)
T ss_dssp CCT------TCSSEEEEEEEET-TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C----------------CE
T ss_pred ccC------CCCCCceEEEeCC-CCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e----------------EE
Confidence 111 1225788899997 666666431 1334434331 1 01
Q ss_pred ccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccC
Q 009266 256 LIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (538)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~ 291 (538)
.....-...+.++|+|+++.|..+. ..+|+.|++..
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 1111234578999999998777665 45899999863
No 310
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.66 E-value=0.031 Score=50.62 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=65.4
Q ss_pred EcCCcCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee--eee---ccCCCCCeEEEEEeecCC---CceEEEE-e--
Q 009266 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSF---HSGHNDNVFQAKIMPFTD---DRSIVTC-A-- 125 (538)
Q Consensus 57 ~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~--~~~---~~~~~~~v~~l~~~~~~~---~~~l~s~-~-- 125 (538)
+...-...+.|+|.|+|++|++--..|.|++++..+++.. ..+ ..........|+++| + +.+|+.. +
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~yt~~ 104 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYFTSA 104 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEEECS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEEecC
Confidence 3334456789999999998888765899999986655532 111 122345788999998 5 3344332 2
Q ss_pred CCCcEEEeecccCc---------eeeeeecc-ccCCCcEEEEEcCCCCcEEEEEc
Q 009266 126 ADGQVRHAQILERG---------GVETKLLG-KHQGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 126 ~dg~v~vwd~~~~~---------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~ 170 (538)
..+.|.-|.+.... ......+. ...+....|+|.|++ .++++.+
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~G 158 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTG 158 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECB
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEEC
Confidence 34455555554311 11111111 222345679999999 5666654
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.62 E-value=0.031 Score=49.32 Aligned_cols=221 Identities=13% Similarity=0.114 Sum_probs=138.5
Q ss_pred CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeE
Q 009266 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (538)
.+|.|.|+..+..+..+... .-+.-.+|.. +++|.-. ..++.|+++.+.+.++.+.... .|.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~-----AdsAIMnP~~-~ViALra-g~~LQiFnletK~klks~~~~e-----------~Vv 110 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPIS-----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTD-----------DVT 110 (365)
T ss_dssp EEEEEEETTSTTSCEEEECC-----CSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEECSS-----------CEE
T ss_pred CEEEEEECCCCCCccccccc-----cceeeeCCCc-cEEEEec-CCeEEEechHHhhhhcceecCC-----------ccE
Confidence 47888999887665443333 2245678887 5655544 5789999999998888877432 466
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc----C--
Q 009266 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----D-- 281 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~-- 281 (538)
-=.|-.. +.|+..+ +..|+-|++... ..|...+.....+. ...|.....+++.++++..+ +
T Consensus 111 fWkWis~--~~L~lVT-~taVyHWs~~~~--------s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~ 177 (365)
T 2xzh_A 111 FWKWISL--NTVALVT-DNAVYHWSMEGE--------SQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNR 177 (365)
T ss_dssp EEEECSS--SEEEEEE-SSEEEEEESSTT--------CCCEEEEECCGGGT--TCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred EEEecCC--CeEEEEc-CCcEEEEcccCC--------CCCceeeecchhcc--cceEEEEEECCCCCEEEEEeEeccCCc
Confidence 6677654 3444433 357999998652 23444443333332 47899999999999876543 2
Q ss_pred --CeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEe-cC-CCcE
Q 009266 282 --EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF-GP-KCEY 357 (538)
Q Consensus 282 --~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-s~-~~~~ 357 (538)
|.+.+|.+.. ...+.+.||... ...+..- .+ ..++
T Consensus 178 v~G~mQLYS~er---------------------------------------~~sQ~ieGhaa~--F~~~~~~g~~~~~~l 216 (365)
T 2xzh_A 178 VVGAMQLYSVDR---------------------------------------KVSQPIEGHAAS--FAQFKMEGNAEESTL 216 (365)
T ss_dssp EEEEEEEEETTT---------------------------------------TEEEEECCSEEE--EEEECCTTCSSCEEE
T ss_pred cceeEEEEeecc---------------------------------------cccceeeeeeee--eEEEecCCCCCCceE
Confidence 4588998774 345677777654 2222210 01 1123
Q ss_pred EEEecc---CCeEEEeeccCc---ce------eEEee---cCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 358 VVSGSD---CGRIFIWKKKGG---EL------IRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 358 l~~gs~---dg~i~iwd~~~~---~~------~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
++.+.. .++++|.++... .+ +..+- +...-..++..|+.-..+..-..-|.|++||+.++.+.
T Consensus 217 f~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 217 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 333332 268999988432 11 11111 11244677888888888888889999999999998763
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.61 E-value=0.019 Score=51.45 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=82.5
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCc---eeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-----CcEEEeecccC
Q 009266 72 DGDILISGSDD-----RRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILER 138 (538)
Q Consensus 72 ~g~~l~t~~~d-----~~i~iw~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-----g~v~vwd~~~~ 138 (538)
++.+++.|+.+ ..+.+|++.+++ ....-.......-.+++. . ++.+++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-L--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-E--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-E--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 46777777754 468999988766 321110111111112222 3 67777777653 36888998877
Q ss_pred ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcC
Q 009266 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (538)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 213 (538)
+......+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+-...-.... .. ....++.+
T Consensus 139 ~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r------~~~~~~~~-- 205 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT--KR------SGAGVALL-- 205 (301)
T ss_dssp EEEEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS--CC------BSCEEEEE--
T ss_pred eEEECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc--cc------ccceEEEE--
Confidence 66544333322222222222 44 677777654 458899998875443311111 01 01122222
Q ss_pred CCCcEEEEEeCC-----CeEEEEEcCCcccc
Q 009266 214 RNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (538)
Q Consensus 214 ~~~~~l~~~~~d-----g~v~iwd~~~~~~~ 239 (538)
++.+++.|+.+ ..|.+||+.+.+..
T Consensus 206 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 206 -NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp -TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred -CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 25778887764 46899999887654
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.61 E-value=0.025 Score=50.61 Aligned_cols=151 Identities=16% Similarity=0.208 Sum_probs=80.9
Q ss_pred CCCEEEEec-CC-----CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-----CcEEEeecccCc-
Q 009266 72 DGDILISGS-DD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERG- 139 (538)
Q Consensus 72 ~g~~l~t~~-~d-----~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-----g~v~vwd~~~~~- 139 (538)
++.+++.|+ .+ ..+.+|++.+++....-.......-.++ ... ++.+++.|+.+ ..+.+|++.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS-VSL--HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEE-EEE--TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccE-EEE--CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 455666666 22 3688999887663221101111111222 223 67778887754 468899988876
Q ss_pred --eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 140 --GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 140 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
......+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+-...-.... ... ...++.+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~------~~~~~~~- 158 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT--ARE------GAGLVVA- 158 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS--CCB------SCEEEEE-
T ss_pred CeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC--Ccc------cceEEEE-
Confidence 4433223222222222333 34 677777654 358899988776443322111 111 1122222
Q ss_pred CCCCcEEEEEeCC-----CeEEEEEcCCcccc
Q 009266 213 PRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (538)
Q Consensus 213 ~~~~~~l~~~~~d-----g~v~iwd~~~~~~~ 239 (538)
+ +.+++.|+.+ ..+.+||+.+.+..
T Consensus 159 -~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 159 -S-GVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp -T-TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred -C-CEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 2 5777777754 45889998887653
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.54 E-value=0.037 Score=49.69 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=117.5
Q ss_pred CceEEeeccC--CceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCC----C
Q 009266 10 NKRARTSVDK--ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD----R 83 (538)
Q Consensus 10 ~~~l~t~~~d--~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d----~ 83 (538)
+.+++.|+.. ..+.+||..+++.... ..+........++.+ ++.+++.|+.+ .
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~-------------------~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~ 70 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDI-------------------RCPFEKRRDAACVFW--DNVVYILGGSQLFPIK 70 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEEC-------------------CCCSCCCBSCEEEEE--TTEEEEECCBSSSBCC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecC-------------------CCCCcccceeEEEEE--CCEEEEEeCCCCCCcc
Confidence 3456666643 5677888887665311 111111111222222 56677777754 6
Q ss_pred eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC------CcEEEeecccCceeeeeeccccCCCcEEEE
Q 009266 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (538)
Q Consensus 84 ~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (538)
.+.+|++.+++-...- ..........+..- ++.+++.|+.+ ..+.+||+.+.+......+.........+.
T Consensus 71 ~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 147 (306)
T 3ii7_A 71 RMDCYNVVKDSWYSKL-GPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE 147 (306)
T ss_dssp EEEEEETTTTEEEEEE-CCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred eEEEEeCCCCeEEECC-CCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence 7889998877642221 11111111112222 67777887764 468899988876544322322222222222
Q ss_pred EcCCCCcEEEEEcC---------CCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC---
Q 009266 158 IEPGSPHVFYTCGE---------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--- 225 (538)
Q Consensus 158 ~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 225 (538)
+ ++ ++++.|+. -..+.+||+.+.+-...-.... .. .-.+++.. + +++++.|+.+
T Consensus 148 ~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r-------~~~~~~~~-~-~~i~v~GG~~~~~ 213 (306)
T 3ii7_A 148 A--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE--AR-------KNHGLVFV-K-DKIFAVGGQNGLG 213 (306)
T ss_dssp E--TT-EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS--CC-------BSCEEEEE-T-TEEEEECCEETTE
T ss_pred E--CC-EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc--hh-------hcceEEEE-C-CEEEEEeCCCCCC
Confidence 2 34 56677663 3458899998875433221110 00 11122222 2 5677777653
Q ss_pred --CeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C-----CeEEEeeccCC
Q 009266 226 --EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-----EFIYLFTQDMG 292 (538)
Q Consensus 226 --g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~-----~~i~~~d~~~~ 292 (538)
..+.+||+.+.+....... . ........+.+ ++++++.++ + ..+.+||+.+.
T Consensus 214 ~~~~~~~yd~~~~~W~~~~~~---------p----~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 214 GLDNVEYYDIKLNEWKMVSPM---------P----WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EBCCEEEEETTTTEEEECCCC---------S----CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCceEEEeeCCCCcEEECCCC---------C----CCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 4688999988765432111 0 01112222333 566766665 2 35888888763
No 315
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.52 E-value=0.034 Score=50.13 Aligned_cols=189 Identities=13% Similarity=0.048 Sum_probs=98.3
Q ss_pred eEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecC-----C----
Q 009266 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-----D---- 82 (538)
Q Consensus 12 ~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~-----d---- 82 (538)
+++.|+ ..+.+||..+++... ..+........+.+...++.+++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~--------------------~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 64 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC--------------------ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDP 64 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE--------------------EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSC
T ss_pred EEEEcC--CceEEECCCCCeEec--------------------CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccc
Confidence 455555 568899998777531 112211122223333457788888873 1
Q ss_pred --CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC--------CcEEEeecccCceeeeeeccccCCC
Q 009266 83 --RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------GQVRHAQILERGGVETKLLGKHQGR 152 (538)
Q Consensus 83 --~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d--------g~v~vwd~~~~~~~~~~~~~~~~~~ 152 (538)
..+.+|+..+++-...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+.+......+......
T Consensus 65 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 65 MSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEEEETTTTEEEECCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cccceEEecCCCCeEEECCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 1277888887654221100111111122222 66777777732 4588899887765443323222222
Q ss_pred cEEEEEcCCCCcEEEEEcC-C-----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC
Q 009266 153 AHKLAIEPGSPHVFYTCGE-D-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (538)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 226 (538)
. +++. -++ ++++.|+. + ..+.+||+.+.+-...-..+. .. ....++.+ ++++++.|+.++
T Consensus 142 ~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r------~~~~~~~~---~~~iyv~GG~~~ 207 (315)
T 4asc_A 142 H-TVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT--AR------SLFGATVH---DGRIIVAAGVTD 207 (315)
T ss_dssp C-EEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS--CC------BSCEEEEE---TTEEEEEEEECS
T ss_pred e-eEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC--ch------hceEEEEE---CCEEEEEeccCC
Confidence 2 2222 234 57777776 2 468999988775433221110 01 01122222 257888887654
Q ss_pred -----eEEEEEcCCcccc
Q 009266 227 -----YTRLYDIRKYKWD 239 (538)
Q Consensus 227 -----~v~iwd~~~~~~~ 239 (538)
.+.+||+.+.+..
T Consensus 208 ~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 208 TGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp SSEEEEEEEEETTTTEEE
T ss_pred CCccceEEEEECCCCeEE
Confidence 5888999887654
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.52 E-value=0.055 Score=49.65 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=58.6
Q ss_pred CcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeee---e---ccCCCCCeEEEEEeecCC---CceEEEEe-C----
Q 009266 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLS---F---HSGHNDNVFQAKIMPFTD---DRSIVTCA-A---- 126 (538)
Q Consensus 62 ~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~~~~~---~---~~~~~~~v~~l~~~~~~~---~~~l~s~~-~---- 126 (538)
...+.|+|.|+|+ ++++ ...|.|++++.. +..... + ..........|+|+| + +.+|+.+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP--DFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT--THHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC--CCCCCCEEEEEEeCCCCC
Confidence 3568999999999 6655 456899999853 332111 1 112234678999998 6 45555443 2
Q ss_pred ---CCcEEEeecccCc----eeee--eecc---ccCCCcEEEEEcCCCCcEEEEEcC
Q 009266 127 ---DGQVRHAQILERG----GVET--KLLG---KHQGRAHKLAIEPGSPHVFYTCGE 171 (538)
Q Consensus 127 ---dg~v~vwd~~~~~----~~~~--~~~~---~~~~~v~~~~~~~~~~~~l~s~~~ 171 (538)
...|..|++.... .... ..+. ........|+|.|++ .++++.+.
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd 149 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE 149 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence 2345556554321 1110 1111 111234679999999 56665443
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.46 E-value=0.055 Score=48.38 Aligned_cols=108 Identities=23% Similarity=0.268 Sum_probs=56.2
Q ss_pred CceEEEEeCC----CcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----CcEEEEecCCCCeeee
Q 009266 118 DRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATEL 188 (538)
Q Consensus 118 ~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~ 188 (538)
+.+++.|+.+ ..+.++++.+........+......-..+.+ ++ .+++.|+.+ ..+.+||+.+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CC-EEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3455555532 4577888877665433222222111222222 34 677777754 3588999887754332
Q ss_pred eeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCcccc
Q 009266 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-----YTRLYDIRKYKWD 239 (538)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~ 239 (538)
-.... ... ...++.+ ++.+++.|+.++ .+.+||+.+.+..
T Consensus 93 ~~~p~--~r~------~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 93 ANMRD--RRS------TLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp CCCSS--CCB------SCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCCCc--ccc------ceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 21111 010 1122222 257777777553 5778888877653
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.43 E-value=0.061 Score=48.22 Aligned_cols=149 Identities=10% Similarity=0.054 Sum_probs=80.0
Q ss_pred CCEEEEecC--CCeEEEEECCCCceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCC----CcEEEeecccCceeeeee
Q 009266 73 GDILISGSD--DRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKL 145 (538)
Q Consensus 73 g~~l~t~~~--d~~i~iw~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~ 145 (538)
+.+++.|+. ...+.+||..+++-...- ....... .+++. . ++.+++.|+.+ ..+.+|++.+.+......
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AACVF-W--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CEEEE-E--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eEEEE-E--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 335555654 356889998876642211 0111111 12222 3 67777887754 678889988876654433
Q ss_pred ccccCCCcEEEEEcCCCCcEEEEEcCC------CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEE
Q 009266 146 LGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (538)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 219 (538)
+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+-...-..+. ... ...++.+ ++.++
T Consensus 88 ~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~------~~~~~~~---~~~iy 153 (306)
T 3ii7_A 88 PPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRC------SHGMVEA---NGLIY 153 (306)
T ss_dssp CSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CCB------SCEEEEE---TTEEE
T ss_pred CCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--Ccc------eeEEEEE---CCEEE
Confidence 3322222222333 34 677777765 458899998875433211111 111 1122222 25677
Q ss_pred EEEeC---------CCeEEEEEcCCcccc
Q 009266 220 AVAGS---------DEYTRLYDIRKYKWD 239 (538)
Q Consensus 220 ~~~~~---------dg~v~iwd~~~~~~~ 239 (538)
+.|+. -..+.+||+.+.+..
T Consensus 154 v~GG~~~~~~~~~~~~~~~~yd~~~~~W~ 182 (306)
T 3ii7_A 154 VCGGSLGNNVSGRVLNSCEVYDPATETWT 182 (306)
T ss_dssp EECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred EECCCCCCCCcccccceEEEeCCCCCeEE
Confidence 77764 345889999887653
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.40 E-value=0.0088 Score=49.44 Aligned_cols=151 Identities=12% Similarity=0.018 Sum_probs=78.1
Q ss_pred CceEEEEeCCCcEEEeecccCce-ee--eeecccc--CCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeec
Q 009266 118 DRSIVTCAADGQVRHAQILERGG-VE--TKLLGKH--QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (538)
Q Consensus 118 ~~~l~s~~~dg~v~vwd~~~~~~-~~--~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 192 (538)
..+|++...| +|+.=.+..... .. .....++ =..+..++|+|++ .+.++ .+|.++-.+..+.....-+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccc
Confidence 4556666666 555544433331 00 0011112 2467899999988 44444 6677776666543322211110
Q ss_pred ccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCC
Q 009266 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (538)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 272 (538)
......+ -....++.|.|+ +.+.++ .+|.|+-++-.+...... .. ....+....-..+..|.|.|+
T Consensus 80 t~IG~~G---w~~F~a~~fD~~-G~LYav--~dG~iyr~~pP~~~~~~W-------l~-~a~~vg~~gw~~~~~lff~p~ 145 (236)
T 1tl2_A 80 KKIGNGG---WNQFQFLFFDPN-GYLYAV--SKDKLYKASPPQSDTDNW-------IA-RATEVGSGGWSGFKFLFFHPN 145 (236)
T ss_dssp EEEECSC---GGGCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCH-------HH-HSEEEECSSGGGEEEEEECTT
T ss_pred cEecccc---cccceEEEECCC-CCEEEe--CCCEEEEeCCCcCCCCce-------ec-cccEeccCCCCceEEEEECCC
Confidence 0000000 001478999997 666666 569887776543211000 00 000011111246899999999
Q ss_pred CCEEEEEcCCeEEEe
Q 009266 273 SELLVSYNDEFIYLF 287 (538)
Q Consensus 273 ~~~l~~~~~~~i~~~ 287 (538)
|.+.++. ++.++-.
T Consensus 146 G~Lyav~-dg~lyr~ 159 (236)
T 1tl2_A 146 GYLYAVH-GQQFYKA 159 (236)
T ss_dssp SCEEEEE-TTEEEEE
T ss_pred ceEEEEe-CCcEEec
Confidence 9999888 7775543
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.38 E-value=0.037 Score=49.91 Aligned_cols=104 Identities=10% Similarity=0.025 Sum_probs=55.8
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC----C-------CcEEEeecccCceeee
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----D-------GQVRHAQILERGGVET 143 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~----d-------g~v~vwd~~~~~~~~~ 143 (538)
+++.|+ ..+.+||..+++-...-.........+.+... ++.+++.|+. + ..+.+|++.+.+....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 445555 57999999888754322121112222223333 6777777773 1 1267788877765443
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCC--------CcEEEEecCCCCe
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAA 185 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~ 185 (538)
..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-
T Consensus 83 ~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W 129 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKW 129 (315)
T ss_dssp CCBSSCEESCEEEEE--TT-EEEEECCEESSTTCCBCCCEEEEETTTTEE
T ss_pred CCCCcchhceeEEEE--CC-EEEEEeCCcCCCCCcccceEEEECCCCCcE
Confidence 222221112222222 34 677777732 4588899887653
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.38 E-value=0.071 Score=47.83 Aligned_cols=150 Identities=11% Similarity=0.089 Sum_probs=81.4
Q ss_pred CCCEEEEecC----C-----CeEEEEECCCCceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCC-----CcEEEeecc
Q 009266 72 DGDILISGSD----D-----RRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQIL 136 (538)
Q Consensus 72 ~g~~l~t~~~----d-----~~i~iw~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~d-----g~v~vwd~~ 136 (538)
++.+++.|+. + ..+.+||+.+.+....- +...... .+++. - ++.+++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-IGVGV-I--DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-CEEEE-E--TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc-cEEEE-E--CCEEEEEcCCCCCcccccEEEECCC
Confidence 5667777765 2 35888998876532211 0111111 12222 2 67777777643 468889988
Q ss_pred cCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
+.+......+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+-...-.... .. ....++.+
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r------~~~~~~~~ 214 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT--IR------SGAGVCVL 214 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS--CC------BSCEEEEE
T ss_pred CCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC--cc------ccceEEEE
Confidence 7765543323322222223333 34 677777654 458899988765433211110 01 11122233
Q ss_pred cCCCCcEEEEEeCC-----CeEEEEEcCCcccc
Q 009266 212 DPRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (538)
Q Consensus 212 ~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~ 239 (538)
+ +.+++.|+.+ ..+.+||+.+.+..
T Consensus 215 --~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 215 --H-NCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp --T-TEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred --C-CEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 2 5788888764 56899999887654
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.34 E-value=0.085 Score=47.77 Aligned_cols=260 Identities=15% Similarity=0.161 Sum_probs=128.6
Q ss_pred CCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeec----cccCCCcEEEEEcCC---CCcEEEEE--cCCCc
Q 009266 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL----GKHQGRAHKLAIEPG---SPHVFYTC--GEDGL 174 (538)
Q Consensus 104 ~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~l~s~--~~dg~ 174 (538)
-...+.|+|.| +|.++++--..|.|++++...+.......+ .........|+|+|+ +..+.++- ...+.
T Consensus 31 L~~P~~ia~~p--dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLP--GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcC--CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34678999999 998777665589999988655443222111 223456789999995 32343332 23455
Q ss_pred EEEEecCCCC--------eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC-------------CCeEEEEEc
Q 009266 175 VQHFDLRTGA--------ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYDI 233 (538)
Q Consensus 175 i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~iwd~ 233 (538)
|.-|.+..+. ....+...+. ... | ....|+|.|+ +.++++.+. .|.|.-++.
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~--~~~--H--~g~~l~fgpD-G~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPK--GVI--H--NGGRIAFGPD-KMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECC--CSS--C--CCCCEEECTT-SCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCC--CCC--c--cCccccCCCC-CCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 6666665421 1111211111 011 2 3467999998 566666442 233333333
Q ss_pred CCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccc
Q 009266 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (538)
.. +. ....|.. ...+..........++|+|+|+++++-. ++.-.|--+..+...-- + .+
T Consensus 182 dG-~i----p~~nPf~---~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGw-P--------~~-- 242 (347)
T 3das_A 182 DG-EP----APGNPFP---GSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGW-P--------EA-- 242 (347)
T ss_dssp TS-SB----CTTCSST---TCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCT-T--------TC--
T ss_pred CC-Cc----cCCCCCC---CCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecC-C--------cc--
Confidence 21 10 0011110 0111111224567899999988776643 22122222222211000 0 00
Q ss_pred cCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcce----eEEeecCcce
Q 009266 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL----IRVIEADRHV 387 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~----~~~~~~h~~~ 387 (538)
... ........++..+..+.. ....++|. .|.+++..-..+.|....+..... ...+.+..+.
T Consensus 243 --~g~-------~~~~~~~~P~~~~~~~~~--ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR 309 (347)
T 3das_A 243 --EGK-------GGGSGFHDPVAQWSTDEA--SPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGR 309 (347)
T ss_dssp --CSS-------CCCTTCCCCSEEECTTTC--CEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSC
T ss_pred --cCC-------CCCccccCCcEecCCCCC--CCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCC
Confidence 000 000001122333332221 25677773 466666666666776667654432 2233344468
Q ss_pred eeEEeecCCCCeEEEee
Q 009266 388 VNCIEPHPHSTVLASSG 404 (538)
Q Consensus 388 v~~~~~s~~~~~l~s~~ 404 (538)
+..|+..|+|.++++..
T Consensus 310 ~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 310 LRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEEEETTEEEEEEC
T ss_pred ccEEEECCCCcEEEEEc
Confidence 89999999998666553
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.29 E-value=0.091 Score=47.12 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=80.9
Q ss_pred CCCCEEEEecC----CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC----C-----CcEEEeeccc
Q 009266 71 TDGDILISGSD----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----D-----GQVRHAQILE 137 (538)
Q Consensus 71 ~~g~~l~t~~~----d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~----d-----g~v~vwd~~~ 137 (538)
-++.+++.|+. -..+.+||..+++-...-.......-.+++ .. ++.+++.|+. + ..+.+||+.+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC-VV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE-EE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 35677777763 236889998876642211001111111222 22 6777777765 2 4688889887
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (538)
.+......+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+-...-.... ... ...++.+
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~------~~~~~~~- 167 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT--RRI------GVGVAVL- 167 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCCSS--CCB------SCEEEEE-
T ss_pred CeEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc--ccc------ceEEEEE-
Confidence 765443323322222223333 34 677777643 358899988765433221111 010 1122222
Q ss_pred CCCCcEEEEEeCC-----CeEEEEEcCCcccc
Q 009266 213 PRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (538)
Q Consensus 213 ~~~~~~l~~~~~d-----g~v~iwd~~~~~~~ 239 (538)
+ +.+++.|+.+ ..+.+||+.+.+..
T Consensus 168 -~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 197 (308)
T 1zgk_A 168 -N-RLLYAVGGFDGTNRLNSAECYYPERNEWR 197 (308)
T ss_dssp -T-TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred -C-CEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence 2 5777777754 45889998887654
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.26 E-value=0.11 Score=47.55 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=61.0
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeee--ccCCCCCeEEEEEeecCC---CceEEEEeC----C---
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSF--HSGHNDNVFQAKIMPFTD---DRSIVTCAA----D--- 127 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~-~~~~~--~~~~~~~v~~l~~~~~~~---~~~l~s~~~----d--- 127 (538)
-.....|+|.|+|+++++- ..+.|++++ .+++ .+..+ ..........|+++| + +..|+.+.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~e-~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTE-RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEEE-TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEEe-CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC--CCCcCCEEEEEEeccCCCCCc
Confidence 3457899999999866654 459999997 4454 22211 012234688999999 6 445554433 2
Q ss_pred -CcEEEeecccC--c----eeeeeecc-ccCCCcEEEEEcCCCCcEEEEEc
Q 009266 128 -GQVRHAQILER--G----GVETKLLG-KHQGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 128 -g~v~vwd~~~~--~----~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~ 170 (538)
+.|..|++... . .+....+. ........|+|.|++ +++++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G 153 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTG 153 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEEC
Confidence 56777776543 1 11101111 112235679999999 5666543
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.21 E-value=0.11 Score=46.73 Aligned_cols=147 Identities=12% Similarity=0.144 Sum_probs=74.7
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC----CC-------cEEEeecccCceeee
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DG-------QVRHAQILERGGVET 143 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~----dg-------~v~vwd~~~~~~~~~ 143 (538)
+++.|+. .+.+||..+++....-...........+... ++.+++.|+. ++ .+.+++..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4445553 4889998887754321111111222222333 6777777773 11 167788877665443
Q ss_pred eeccccCCCcEEEEEcCCCCcEEEEEcCC-------CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCC
Q 009266 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGED-------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (538)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 216 (538)
..+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+-...-..+. ... . .+++.. ++
T Consensus 94 ~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~------~-~~~~~~--~~ 159 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVY------G-HNVISH--NG 159 (318)
T ss_dssp SCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEE------S-CEEEEE--TT
T ss_pred CCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--ccc------c-cEEEEE--CC
Confidence 223222222222222 34 677777753 247888888765443221111 010 1 122222 25
Q ss_pred cEEEEEeC------CCeEEEEEcCCcccc
Q 009266 217 NLFAVAGS------DEYTRLYDIRKYKWD 239 (538)
Q Consensus 217 ~~l~~~~~------dg~v~iwd~~~~~~~ 239 (538)
.+++.|+. -..+.+||+.+.+..
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 67777764 245899999887654
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.21 E-value=0.055 Score=49.75 Aligned_cols=155 Identities=9% Similarity=0.069 Sum_probs=94.0
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeeccCC---CCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce------
Q 009266 70 NTDGDILISGSDDRRVILWDWKTERVKLSFHSGH---NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG------ 140 (538)
Q Consensus 70 s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~------ 140 (538)
..+|..|+.+- ++.||.-++.....-+.+...+ -..|..+..+| +|.+||..+. ..|.|-.+..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp--sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST--SGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT--TSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC--CCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 34566666554 3678887877443322222221 23688899999 9999998875 5788888763321
Q ss_pred ------eeeeeccc----cCCCcEEEEEcCCCC--cEEEEEcCCCcEEEEecCCCCeeee-eeecccCCCCCcceeeeeE
Q 009266 141 ------VETKLLGK----HQGRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLN 207 (538)
Q Consensus 141 ------~~~~~~~~----~~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 207 (538)
.....+.. ...+|..+.|+|-+. ..|++-..|+.||+||+........ +... ............|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~-~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKP-NNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCC-CSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcc-ccccCCCcccceEE
Confidence 11111211 246799999999763 3788999999999999986332211 2110 00000000114688
Q ss_pred EEEEcCCCCcEEEEEe--CCCeEEE
Q 009266 208 AIAIDPRNANLFAVAG--SDEYTRL 230 (538)
Q Consensus 208 ~~~~~~~~~~~l~~~~--~dg~v~i 230 (538)
+++|.++ +..|...+ ..|.|+-
T Consensus 184 S~~Fg~~-~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 184 DLEFSKD-GLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEECTT-SSCEEEEECTTSCEEEE
T ss_pred EEEEcCC-CcEEEEEecCCCCCEEE
Confidence 9999995 66666644 7777754
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.20 E-value=0.27 Score=50.61 Aligned_cols=293 Identities=10% Similarity=0.019 Sum_probs=153.4
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 142 (538)
.|.++...+++..|..|+. +-|..++..+++... +.......|.+|...+ +|.+. .|+. +-+.+++..+.....
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d~--~g~lW-igT~-~Gl~~~~~~~~~~~~ 265 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLALDG--NGDLL-AGTD-NGLYVYHNDTTPLQH 265 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEECT--TCCEE-EEET-TEEEEECCTTSCCEE
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEEcC--CCCEE-EEeC-CceeEEecCCCcEEE
Confidence 4888888877765444543 458888887665422 2111233577777765 55544 4454 457778876543321
Q ss_pred eeec-----cccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCc
Q 009266 143 TKLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (538)
Q Consensus 143 ~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 217 (538)
.... .-....|.++....++. |..|+..| +.++.. .. ....+..... ........|.++...++ +.
T Consensus 266 ~~~~~~~~~~l~~~~i~~i~~D~~g~--lWiGT~~G-l~~~~~-~~-~~~~~~~~~~---~~~~~~~~v~~i~~D~~-g~ 336 (758)
T 3ott_A 266 IIHDSRNIQSLTNNIIWNIFADQEHN--IWLGTDYG-ISLSRY-NS-ALQFIPISQI---TGTGDGNQFYSLFRDSK-GF 336 (758)
T ss_dssp ECCCTTCTTSCSCSCEEEEEECTTCC--EEEEESSS-EEEECC-CC--CEEEEHHHH---SCSCCCCBEEEEEECTT-CC
T ss_pred EEcCCCCcCcCCcCeEEEEEEcCCCC--EEEEeCCc-cccccc-CC-ceeEEecccC---CCCCCCceEEEEEEcCC-CC
Confidence 1100 01234588888888773 45555556 554432 22 1122211100 00001235888888876 44
Q ss_pred EEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCC-ccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCC
Q 009266 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN-LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296 (538)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~ 296 (538)
+ ..|+..| +..++..+++.... ..+.... ...-....|.++.-.++|++.+.. .+.|.+|+..++..
T Consensus 337 l-WiGt~~G-l~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~-- 404 (758)
T 3ott_A 337 Y-WFGGANG-LIRFTDPAGERHDA-------IWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQF-- 404 (758)
T ss_dssp E-EEEETTE-EEEESCTTSSCCCC-------EEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEE--
T ss_pred E-EEeeCCc-ceeeccccccccee-------EEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcE--
Confidence 4 4445554 66666554321100 0000000 000123468999988888877655 56899998765310
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCCCcccCCceee--cc---ccceeeeEEEEecCCCcEEEEeccCCeEEEee
Q 009266 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--GH---RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (538)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd 371 (538)
..+. .. .....|.++.. .++|+ |..|+..+-|.+++
T Consensus 405 -------------------------------------~~~~~~~~~~~~~~~~v~~i~~-d~~g~-lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 405 -------------------------------------IHYNIVDNTGTYNTNWTYYIFE-DTAGQ-LWISTCLGGIFVVD 445 (758)
T ss_dssp -------------------------------------EEEEEECCC--CBSSSEEEEEE-CTTSE-EEEEESSSCEEEEE
T ss_pred -------------------------------------EEeecCCCcCCCCCceEEEEEE-cCCCC-EEEEECCCceEEEc
Confidence 1110 00 01113677776 67765 44466555678888
Q ss_pred ccCc-----cee---EEeec----CcceeeEEeecCCCCeEEEeecCCceEEecCCCCcccc
Q 009266 372 KKGG-----ELI---RVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (538)
Q Consensus 372 ~~~~-----~~~---~~~~~----h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 421 (538)
..+. ... ..+.. ....|.++...++|++.+.++..+-|..++..+++...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~ 507 (758)
T 3ott_A 446 KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK 507 (758)
T ss_dssp HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE
T ss_pred cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE
Confidence 6431 111 11111 12358899999999877644444668888887765443
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.15 E-value=0.059 Score=57.46 Aligned_cols=268 Identities=12% Similarity=0.123 Sum_probs=145.1
Q ss_pred CCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCC
Q 009266 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (538)
Q Consensus 82 d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (538)
..+|.|-|+..+..+.+... .--+...+| ..+.||.-. ..++.|+++.+...+....+ ...|.-=.|-..
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP--~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWis~ 116 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISL 116 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCC--CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEecCC
Confidence 34788889887665432211 122334577 666666554 68999999998777665333 345666666654
Q ss_pred CCcEEEEEcCCCcEEEEecCC-CCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe------CCCeEEEEEcC
Q 009266 162 SPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG------SDEYTRLYDIR 234 (538)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~~ 234 (538)
. .|+..+. ..|..|++.. ..+.+.+..+... ....|..-..+++...++++|- -.|.+.+|...
T Consensus 117 ~--~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L------~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 117 N--TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred C--eeEEEcC-CeEEEeccCCCCccHHHHhcchhc------ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 4 3444433 5799999964 2344444433221 2346777777887444444443 34788899887
Q ss_pred CccccCCCCCCCCCcccCCCCccCCCccceEEEEEcC---CCCEEEEEc----CCeEEEeeccCC-CCCCCCCCCCcccc
Q 009266 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYN----DEFIYLFTQDMG-LGPNPPPSSPVSTR 306 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~----~~~i~~~d~~~~-~~~~~~~~~~~~~~ 306 (538)
.+. ...+.+|......+.+.. ...+++.+. .++++|..+... .....++
T Consensus 188 r~~----------------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~------- 244 (1630)
T 1xi4_A 188 RKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP------- 244 (1630)
T ss_pred ccc----------------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc-------
Confidence 653 222223333332222211 122333332 257888888553 1111111
Q ss_pred ccccccCCCCccccCCCCCCCCcccCCce-eec-cccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecC
Q 009266 307 SEASEMGSDHTSAASPSTANTDVRIAPQV-YKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (538)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h 384 (538)
.+.... +.. ..+. ...++.. |+.-..+..-+.-|.|++||+.++.++..-+-.
T Consensus 245 -----------------------kk~~~~~~~~~~~~D-fpv~~~v-s~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 245 -----------------------KKAVDVFFPPEAQND-FPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred -----------------------cccccccCCcccccC-cceEEEe-ccccCEEEEEecCceEEEEecccchhhhhcccc
Confidence 000000 111 1111 1334555 777778888888999999999999988655444
Q ss_pred cceeeEEeecCCCCeEEEeecCCceEEecCCC
Q 009266 385 RHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
..+|...+..+...=++.....|.|.--.+..
T Consensus 300 ~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred CCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 45555554444333344444566655554443
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.09 E-value=0.15 Score=45.89 Aligned_cols=154 Identities=13% Similarity=0.150 Sum_probs=78.9
Q ss_pred EcCCCCEEEEecC----CC-------eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-------CcE
Q 009266 69 FNTDGDILISGSD----DR-------RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------GQV 130 (538)
Q Consensus 69 ~s~~g~~l~t~~~----d~-------~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-------g~v 130 (538)
...++.+++.|+. ++ .+.+|+..+++-...-.......-.+++.. ++.+++.|+.+ ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceE
Confidence 3456788888873 11 277888877654221101111111222222 67777777753 347
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcC------CCcEEEEecCCCCeeeeeeecccCCCCCcceee
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (538)
.+||+.+.+......+....... +++. .++ ++++.|+. -..+.+||+.+.+-...-.... ...
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~------ 198 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT--PRS------ 198 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESC-EEEE-ETT-EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS--CCB------
T ss_pred EEEeCCCCCEeECCCCCCccccc-EEEE-ECC-EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC--Ccc------
Confidence 78888777655432222211111 2222 344 57777764 2358999998875433211111 010
Q ss_pred eeEEEEEcCCCCcEEEEEeCC-----CeEEEEEcCCcccc
Q 009266 205 NLNAIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~ 239 (538)
...++.+ ++.+++.|+.+ ..+.+||+.+.+..
T Consensus 199 ~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 199 MFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp SCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred cceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 1122222 25777777643 35778998877653
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.08 E-value=0.053 Score=48.49 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=80.9
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC-------CcEEEeecccCc
Q 009266 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------GQVRHAQILERG 139 (538)
Q Consensus 72 ~g~~l~t~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-------g~v~vwd~~~~~ 139 (538)
++++++.|+.++ .+.+||+.+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 567777776543 578888887654222111111111222332 67777777642 458889988776
Q ss_pred eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC-----CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCC
Q 009266 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (538)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 214 (538)
......+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+-...-.... ... ....+.+
T Consensus 185 W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~r~------~~~~~~~--- 250 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM--CRR------NAGVCAV--- 250 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--CCB------SCEEEEE---
T ss_pred EEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--ccc------cCeEEEE---
Confidence 6543323222222222222 34 677777764 368999998775443221111 000 1122222
Q ss_pred CCcEEEEEeCCC-----eEEEEEcCCccc
Q 009266 215 NANLFAVAGSDE-----YTRLYDIRKYKW 238 (538)
Q Consensus 215 ~~~~l~~~~~dg-----~v~iwd~~~~~~ 238 (538)
++.+++.|+.++ .|.+||+.+.+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 257888887653 488999887765
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.07 E-value=0.22 Score=47.38 Aligned_cols=106 Identities=14% Similarity=0.228 Sum_probs=62.3
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee--eeecc-----CCCCCeEEEEEeecCC---CceEEEEeC-----
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHS-----GHNDNVFQAKIMPFTD---DRSIVTCAA----- 126 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~--~~~~~-----~~~~~v~~l~~~~~~~---~~~l~s~~~----- 126 (538)
...++|+|.|+|+++++-...+.|++++..++... ..+.. .....+..|+|+| + +.+|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEEEEEeccccC
Confidence 45679999999998887655457888876555432 22211 1245678999998 6 666655542
Q ss_pred --------CCcEEEeecccCc------eeeeeecc-ccCCCcEEEEEcCCCCcEEEEEc
Q 009266 127 --------DGQVRHAQILERG------GVETKLLG-KHQGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 127 --------dg~v~vwd~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~ 170 (538)
...|.-|.+.... .+....+. ...+....|+|.|+| +++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 1345555543221 11111111 222457899999999 5666544
No 332
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.04 E-value=0.37 Score=49.52 Aligned_cols=276 Identities=10% Similarity=0.157 Sum_probs=146.2
Q ss_pred cCcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCce
Q 009266 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (538)
Q Consensus 61 ~~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 140 (538)
...|++|.-..+|.+- .|..+| +..||-..-+............|.++.... ++ .|..++..| +..++..+...
T Consensus 21 ~n~V~~I~qD~~G~lW-igT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~--~g-~lWigT~~G-l~~yd~~~~~f 94 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW-IGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIID--NT-YLYMGTDNG-ILVYNYRADRY 94 (758)
T ss_dssp CCCEEEEEECTTSCEE-EEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEET--TT-EEEEEETTE-EEEEETTTTEE
T ss_pred cceEEEEEECCCCCEE-EEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcC--CC-cEEEEeCCC-eEEEeCCCCEE
Confidence 4679999998888544 455666 566763221111111011234688887765 54 566666655 77888776533
Q ss_pred eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
... .......|.++.. .++ . |..++.. -|..|+..+++.......... . ....|.++...++ +.+.+
T Consensus 95 ~~~--~~~~~~~i~~i~~-~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~--l----~~~~i~~i~~d~~-g~lWi 161 (758)
T 3ott_A 95 EQP--ETDFPTDVRTMAL-QGD-T-LWLGALN-GLYTYQLQSRKLTSFDTRRNG--L----PNNTIYSIIRTKD-NQIYV 161 (758)
T ss_dssp CCC--SCCCCSCEEEEEE-ETT-E-EEEEETT-EEEEEETTTCCEEEECHHHHC--C----SCSCEEEEEECTT-CCEEE
T ss_pred ECc--ccCCCceEEEEEe-cCC-c-EEEEcCC-cceeEeCCCCeEEEeccCCCC--c----CCCeEEEEEEcCC-CCEEE
Confidence 221 1112335676654 344 3 5555555 588889877654322110000 0 1225788888876 44444
Q ss_pred EEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCC
Q 009266 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS 300 (538)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~ 300 (538)
|+.. -|..|+..+.+.... ............|.++...+++..|..++.+.+..++..++.
T Consensus 162 -gt~~-Gl~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~------- 222 (758)
T 3ott_A 162 -GTYN-GLCRYIPSNGKFEGI----------PLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQ------- 222 (758)
T ss_dssp -EETT-EEEEEETTTTEEEEE----------CCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTE-------
T ss_pred -EeCC-CHhhCccCCCceEEe----------cCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCe-------
Confidence 4444 577788766542110 000000011235888888887664444444578888865421
Q ss_pred CCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEE
Q 009266 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV 380 (538)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~ 380 (538)
...+... ....|.++.. .++|.+.+. +. +-|.+++..+++....
T Consensus 223 --------------------------------~~~~~~l-~~~~i~~i~~-d~~g~lWig-T~-~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 223 --------------------------------IKQTEAF-HNNSIKSLAL-DGNGDLLAG-TD-NGLYVYHNDTTPLQHI 266 (758)
T ss_dssp --------------------------------EEEEEEE-EEEEEEEEEE-CTTCCEEEE-ET-TEEEEECCTTSCCEEE
T ss_pred --------------------------------EEeccCC-CCCeEEEEEE-cCCCCEEEE-eC-CceeEEecCCCcEEEE
Confidence 1111111 1123778876 777765554 43 4578888766543321
Q ss_pred ee-------cCcceeeEEeecCCCCeEEEeecCCceEEe
Q 009266 381 IE-------ADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (538)
Q Consensus 381 ~~-------~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw 412 (538)
.. .....|.++....+|.+.+.. ..| |.++
T Consensus 267 ~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~G-l~~~ 303 (758)
T 3ott_A 267 IHDSRNIQSLTNNIIWNIFADQEHNIWLGT-DYG-ISLS 303 (758)
T ss_dssp CCCTTCTTSCSCSCEEEEEECTTCCEEEEE-SSS-EEEE
T ss_pred EcCCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCc-cccc
Confidence 11 112458888888888755443 335 4444
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.03 E-value=0.04 Score=45.60 Aligned_cols=189 Identities=10% Similarity=0.017 Sum_probs=94.7
Q ss_pred CCEEEEecCCCeEEEEECCCCce------eeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee----
Q 009266 73 GDILISGSDDRRVILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE---- 142 (538)
Q Consensus 73 g~~l~t~~~d~~i~iw~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~---- 142 (538)
..+|++...| +|+.=....+.. ..++-.+--..+..++|+| +|.+.++ .+|.+.-.+..+.....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P--~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP--GGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT--TSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC--CccEEEE--eCCeEEEECCCCCCccccccc
Confidence 3456666666 555544444431 1222111134788999999 9986666 66766555543321110
Q ss_pred eeecc--ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEE
Q 009266 143 TKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (538)
Q Consensus 143 ~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 220 (538)
...+. +-. ...++.|.|++ .+.++ .||.|+-++..+.....-+......... .-..+..|.|.|+ +.+.+
T Consensus 79 ~t~IG~~Gw~-~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~---gw~~~~~lff~p~-G~Lya 150 (236)
T 1tl2_A 79 AKKIGNGGWN-QFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSG---GWSGFKFLFFHPN-GYLYA 150 (236)
T ss_dssp CEEEECSCGG-GCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECS---SGGGEEEEEECTT-SCEEE
T ss_pred ccEecccccc-cceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccC---CCCceEEEEECCC-ceEEE
Confidence 00010 111 14789999999 45444 5698888876443221111100000000 1125799999998 66766
Q ss_pred EEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEE
Q 009266 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (538)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~ 285 (538)
+. ++.++-+...+..-... ......+....-...+.+.|.|++.+.++. ++.++
T Consensus 151 v~--dg~lyr~~~P~~~~~~w--------l~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y 204 (236)
T 1tl2_A 151 VH--GQQFYKALPPVSNQDNW--------LARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFY 204 (236)
T ss_dssp EE--TTEEEEECCCSSTTCCH--------HHHCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred Ee--CCcEEecCCCCCCCccc--------ccccceeccCCcceEEEEEECCCCcEEEEe-CCeEE
Confidence 66 77754322221110000 000011111223345567799999888877 66443
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.02 E-value=0.046 Score=58.24 Aligned_cols=222 Identities=12% Similarity=0.099 Sum_probs=129.2
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (538)
..+|.|.|+.++..+..+... .-+.-.+|.. ++++.-. ..++.|+++.+...++.+.... +|
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~-~iiALra-g~~lQiFnl~~k~klks~~~~e-----------~V 108 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTD-----------DV 108 (1630)
T ss_pred CceEEEEECCCCCCccccccc-----chhhccCCCc-ceEEEec-CCeEEEeehHHhhhhcccccCC-----------Cc
Confidence 347888888876655332222 2345578877 4555443 6789999999988777766332 45
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc------
Q 009266 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN------ 280 (538)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------ 280 (538)
.-=.|-.. +.|+..+ +..|.-|++.... .|...+....... ...|.....+++.++++..+
T Consensus 109 vfWkWis~--~~l~lVT-~~aVyHW~~~~~s--------~P~k~fdR~~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~ 175 (1630)
T 1xi4_A 109 TFWKWISL--NTVALVT-DNAVYHWSMEGES--------QPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQN 175 (1630)
T ss_pred eEEEecCC--CeeEEEc-CCeEEEeccCCCC--------ccHHHHhcchhcc--cCeeEEeeeCCCCCeEEEEeeccCCC
Confidence 55566543 3333332 3579999996421 2333333332222 46788899999999876543
Q ss_pred --CCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEe-cCC-Cc
Q 009266 281 --DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF-GPK-CE 356 (538)
Q Consensus 281 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-s~~-~~ 356 (538)
.|.+.+|++..+ ..+.+.||... ...+..- .+. ..
T Consensus 176 ~v~G~mQLyS~er~---------------------------------------~sQ~iegha~~--F~~~~~~~~~~~~~ 214 (1630)
T 1xi4_A 176 RVVGAMQLYSVDRK---------------------------------------VSQPIEGHAAS--FAQFKMEGNAEEST 214 (1630)
T ss_pred cccceeeeeecccc---------------------------------------cchhhhHhHhh--hheeccCCCCCCce
Confidence 246788887643 33445555443 1111110 111 11
Q ss_pred EEEEecc---CCeEEEeeccCc---cee------EEeec---CcceeeEEeecCCCCeEEEeecCCceEEecCCCCccc
Q 009266 357 YVVSGSD---CGRIFIWKKKGG---ELI------RVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (538)
Q Consensus 357 ~l~~gs~---dg~i~iwd~~~~---~~~------~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 420 (538)
+++.+.. .++++|.++... .+. ..+.. ...-..++..++.-..+..-..-|.|.++++.++.+.
T Consensus 215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence 2221211 268888887432 111 11111 1234567788888888888888999999999998664
No 335
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.85 E-value=0.27 Score=44.74 Aligned_cols=197 Identities=12% Similarity=0.177 Sum_probs=110.3
Q ss_pred cEEEEEEcCCCCEEEEec------------CCCeEEEEECCCC--cee-eeeccC-----CCCCeEEEEEeecCCCc-eE
Q 009266 63 CVNTVSFNTDGDILISGS------------DDRRVILWDWKTE--RVK-LSFHSG-----HNDNVFQAKIMPFTDDR-SI 121 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~------------~d~~i~iw~~~~~--~~~-~~~~~~-----~~~~v~~l~~~~~~~~~-~l 121 (538)
..-.|+..|+|..+++++ .+|.|.++++.+. +.. ..+ .+ ..-....|.+.+..++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345566788886655552 6899999998743 221 122 22 22366777776511243 45
Q ss_pred EEEe-C--CCcEEEeecccCce--eeeeecccc-CCCcEEEEEcCCCCcEEEEEc-----------------CCCcEEEE
Q 009266 122 VTCA-A--DGQVRHAQILERGG--VETKLLGKH-QGRAHKLAIEPGSPHVFYTCG-----------------EDGLVQHF 178 (538)
Q Consensus 122 ~s~~-~--dg~v~vwd~~~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~-----------------~dg~i~iw 178 (538)
+++. . ..+|.+|.+..... .....+.+. -...+.+++.++| .++++.. ..|.|..+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 5543 2 46788888765432 222223222 2467899999998 5555543 12345445
Q ss_pred ecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ccccCCCCCCCCCcccCCCCcc
Q 009266 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLI 257 (538)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 257 (538)
+. ++...... .-...+.++|+|++..++++-+..+.|+.|++.. +++... ...
T Consensus 209 d~--~~~~~~~~-----------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~-------------~~~ 262 (355)
T 3sre_A 209 SP--NDVRVVAE-----------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL-------------RVL 262 (355)
T ss_dssp CT--TCCEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE-------------EEE
T ss_pred EC--CeEEEeec-----------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC-------------EEE
Confidence 44 33222222 1224689999998545556666788999999863 221100 001
Q ss_pred CCCccceEEEEEcC-CCCEEEEEc-CC-eEEEee
Q 009266 258 GDEQVGITGLAFSD-QSELLVSYN-DE-FIYLFT 288 (538)
Q Consensus 258 ~~~~~~i~~~~~s~-~~~~l~~~~-~~-~i~~~d 288 (538)
......-.+++.+ +|.+.+++. .+ +|..|+
T Consensus 263 -~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 263 -SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp -ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred -eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 1135678899999 598887665 32 444443
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.82 E-value=0.36 Score=45.87 Aligned_cols=110 Identities=13% Similarity=0.230 Sum_probs=60.0
Q ss_pred CCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccc------cCCCcEEEEEcCC---CCcEEEEEcC----
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK------HQGRAHKLAIEPG---SPHVFYTCGE---- 171 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~~l~s~~~---- 171 (538)
...+.|+|.| +|+++++-...+.|++++..++.......+.. ....+..|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 4567999999 99877765544578888765444322222221 2355779999995 4344444432
Q ss_pred --------CCcEEEEecCCCC--e---eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEe
Q 009266 172 --------DGLVQHFDLRTGA--A---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (538)
Q Consensus 172 --------dg~i~iwd~~~~~--~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 223 (538)
...|.-|.+.... . ...+..... ... | ....|+|.|+ ++++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~--~~~--H--~~~~l~f~pD-G~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS--SKD--H--QSGRLVIGPD-QKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC--CSS--C--CEEEEEECTT-SCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC--CCC--C--CCCeEeECCC-CeEEEEEC
Confidence 2345556554321 1 111211111 011 2 4688999998 56666544
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.17 Score=45.64 Aligned_cols=117 Identities=11% Similarity=0.106 Sum_probs=71.4
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeec-CCCceEEEE-eCCCcEEEeecccCceeeeeeccc--c
Q 009266 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTC-AADGQVRHAQILERGGVETKLLGK--H 149 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~--~ 149 (538)
.+++.++.||.|.-+|..+|+.+.++......++....-... .++..++.. +.+|.|..++..++.......... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 467888999999999999999988874332123322211110 022333333 578999999887764433222221 1
Q ss_pred CCCcEE---EEE------cCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeec
Q 009266 150 QGRAHK---LAI------EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (538)
Q Consensus 150 ~~~v~~---~~~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 192 (538)
..++.. ..+ +. + ..+++|+.+|++...|+++|+.+..+...
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~-~-g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVE-D-EKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEEECC----------C-C-EEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccccCCCceeeccccccc-C-CEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111211 000 12 2 46899999999999999999999887643
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.76 E-value=0.32 Score=44.55 Aligned_cols=96 Identities=10% Similarity=0.033 Sum_probs=48.7
Q ss_pred CCCEEEEecCC-CeEEEEECCCCceeeeeccC-C--CCCeEEEEEeecCCCceEEEEeC-C---------CcEEEeeccc
Q 009266 72 DGDILISGSDD-RRVILWDWKTERVKLSFHSG-H--NDNVFQAKIMPFTDDRSIVTCAA-D---------GQVRHAQILE 137 (538)
Q Consensus 72 ~g~~l~t~~~d-~~i~iw~~~~~~~~~~~~~~-~--~~~v~~l~~~~~~~~~~l~s~~~-d---------g~v~vwd~~~ 137 (538)
++++++.|+.+ ..+.+|++.+.......+.. . ...-.+++.. ++.+++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 56666777643 46888888642111111111 1 1111222222 6777777775 2 4688899888
Q ss_pred CceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC
Q 009266 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 172 (538)
.+......+......-.+++. .++ ++++.|+.+
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV-HNG-KAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE-ETT-EEEEEECCC
T ss_pred CcEEECCCCCCcccccceEEE-ECC-EEEEEeCcC
Confidence 766544322211111122222 345 677888764
No 339
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.75 E-value=0.34 Score=44.64 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=90.0
Q ss_pred CCceEEEEeCCCcEEEeecccCceeeeeeccc--cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee--------
Q 009266 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-------- 186 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------- 186 (538)
+|..++.+-. +.||.-++.....-+...+.. .-..|..+..+|.| .+|+..+. ..|.|..+..+...
T Consensus 31 n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 31 NGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred CCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEecC-CeEEEEEecCccccCccccccc
Confidence 5555555543 677777776433222222332 12358889999999 57666654 58999888733211
Q ss_pred ----eeeeecccCCCCCcceeeeeEEEEEcCCC--CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCC
Q 009266 187 ----ELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (538)
Q Consensus 187 ----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (538)
..+..... ......+|..+.|||-+ +..|++-..|+.||+||+........ .+......+ -....
T Consensus 108 ~~q~~ty~l~~~----~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f----g~d~~ 178 (452)
T 3pbp_A 108 AFQIFHYSIDEE----EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF----GLDAR 178 (452)
T ss_dssp TTEEEEEEGGGC----C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE----ESCSS
T ss_pred ccceeEEEcCCc----ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc----CCCcc
Confidence 11222111 01124579999999973 34899999999999999987321111 111110001 01112
Q ss_pred ccceEEEEEcCCCCEEEE--Ec-CCeEEEe
Q 009266 261 QVGITGLAFSDQSELLVS--YN-DEFIYLF 287 (538)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~--~~-~~~i~~~ 287 (538)
...|.+++|.+++-.|.. .+ .|.|+-.
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 367899999998765544 33 3456544
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.1 Score=47.00 Aligned_cols=209 Identities=11% Similarity=-0.057 Sum_probs=104.9
Q ss_pred CceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEE---EcCCCCEEEEe-cCCCeE
Q 009266 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVS---FNTDGDILISG-SDDRRV 85 (538)
Q Consensus 10 ~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~s~~g~~l~t~-~~d~~i 85 (538)
+.+++.++.||.|.-+|..+|+.+-+.... ...++.... ...++..++.. +.+|.|
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--------------------~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l 69 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE--------------------NFQPLIEIQEPSRLETYETLIIEPFGDGNI 69 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG--------------------GSCCSEECCCSCTTTSSEEEEECCSTTTEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC--------------------ccCCcEEecCCccccCCcEEEEEECCCCEE
Confidence 347889999999999999999876321110 001111100 00133344443 578999
Q ss_pred EEEECCCCceeeeeccC---CCCCeEEEEEeecC-------CCceEEEEeCCCcEEEeecccCceeeeeeccccCCC---
Q 009266 86 ILWDWKTERVKLSFHSG---HNDNVFQAKIMPFT-------DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR--- 152 (538)
Q Consensus 86 ~iw~~~~~~~~~~~~~~---~~~~v~~l~~~~~~-------~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--- 152 (538)
..++..+|.....+... ...++.. .-.|.. .+..+++++.+|.+...++.+++.+...........
T Consensus 70 ~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 148 (339)
T 2be1_A 70 YYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGS 148 (339)
T ss_dssp EEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----
T ss_pred EEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccc
Confidence 99998888654433111 1122221 111111 456889999999999999999988876433322111
Q ss_pred --cEEEEEc-----CCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeee-EEEEEcCCCCcEEEEEeC
Q 009266 153 --AHKLAIE-----PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 153 --v~~~~~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~ 224 (538)
..|.... ..+ ..|+.+..+..|.+.+ ++++ +..+......... ....+ .+-.++.+ +.+ +.++.
T Consensus 149 ~~e~~~~~~d~~~d~~~-~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~~~~~~~~~~~s~D-g~~-~~~~~ 220 (339)
T 2be1_A 149 QSVDCSPEEKIKLQECE-NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---LDVPLALQNTFSKD-GMC-IAPFR 220 (339)
T ss_dssp ----------------C-CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---TTHHHHTTCSSCSS-SCC-EEEET
T ss_pred cccccccccccccccCC-CeEEEecceEEEEEEC-CCCC-eEEEecccccccc---cccccccccccccC-CcE-EEECC
Confidence 1111111 112 3566676666777766 4443 3222211000000 00000 00001122 334 44788
Q ss_pred CCeEEEEEcCCccccC-CCCCCCC
Q 009266 225 DEYTRLYDIRKYKWDG-STDFGQP 247 (538)
Q Consensus 225 dg~v~iwd~~~~~~~~-~~~~~~~ 247 (538)
+|.|.-+|..+++... ...+..|
T Consensus 221 dg~v~A~d~~~G~~~W~~~~l~sP 244 (339)
T 2be1_A 221 DKSLLASDLDFRIARWVSPTFPGI 244 (339)
T ss_dssp TTEEEEECSTTCCEEEECCCCSSC
T ss_pred CCEEEEEECCCCcEEEEeecCCCC
Confidence 8888888888777654 3344433
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.55 E-value=0.48 Score=43.78 Aligned_cols=204 Identities=12% Similarity=0.210 Sum_probs=114.7
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeee
Q 009266 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (538)
Q Consensus 66 ~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 145 (538)
+.-.+|..+.||.=. ..++.||++++...+..+. ....|..=.|-. .+.|+..+. ..|+-|++.... .+.+.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis---~~~l~lVT~-taVyHWsi~~~s-~P~kv 141 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWIS---LNTVALVTD-NAVYHWSMEGES-QPVKM 141 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEE---TTEEEEECS-SEEEEEESSSSC-CCEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecC---CCeEEEEcC-CeeEEecccCCC-Cchhh
Confidence 345678777777654 5789999999988777662 244677777764 456665553 579999997532 22233
Q ss_pred ccccC----CCcEEEEEcCCCCcEEEEEc------CCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEc--C
Q 009266 146 LGKHQ----GRAHKLAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID--P 213 (538)
Q Consensus 146 ~~~~~----~~v~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 213 (538)
+..|. ..|..-..+++.+-++++|- -.|.+.+|..+.+.. +.+..| .+....+.+. +
T Consensus 142 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGh----------aa~F~~~~~~g~~ 210 (494)
T 1bpo_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGH----------AASFAQFKMEGNA 210 (494)
T ss_dssp EECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCS----------EEEEEEEECTTCS
T ss_pred eecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheee----------eeeeEEEecCCCC
Confidence 44443 45667777888844444432 246788998776543 333322 1122222221 1
Q ss_pred CCCcEEEEEeC---CCeEEEEEcCCccccCCCCCCC-CCcccCCCCccCCCccceEEEEEcCCCCEEEEE-cCCeEEEee
Q 009266 214 RNANLFAVAGS---DEYTRLYDIRKYKWDGSTDFGQ-PADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-NDEFIYLFT 288 (538)
Q Consensus 214 ~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~~~i~~~d 288 (538)
....+|+.+.. .++++|.++..... +...+.. .+..+.+. ........++..++.-.++..- ..|.|++||
T Consensus 211 ~~~~lf~fa~r~~~g~kLhi~Ei~~~~~-~~~~f~kk~vdv~fpp---e~~~DFPvamqvs~kygviyviTK~G~i~lyD 286 (494)
T 1bpo_A 211 EESTLFCFAVRGQAGGKLHIIEVGTPPT-GNQPFPKKAVDVFFPP---EAQNDFPVAMQISEKHDVVFLITKYGYIHLYD 286 (494)
T ss_dssp SEEEEEEEEECSTTCCEEEEEECSCCCT-TCCCCCCEEEECCCCT---TSTTCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred CCceEEEEEEecCCCcEEEEEEcCCCcc-CCCCccceeeeeeCCc---ccccCceeEEEecccCCEEEEEecCceEEEEe
Confidence 10123333333 27899999854310 0101100 00111111 1224556788888876555554 478999999
Q ss_pred ccCC
Q 009266 289 QDMG 292 (538)
Q Consensus 289 ~~~~ 292 (538)
+.++
T Consensus 287 leTg 290 (494)
T 1bpo_A 287 LETG 290 (494)
T ss_dssp TTTC
T ss_pred cccc
Confidence 9985
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.50 E-value=0.41 Score=48.46 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=85.2
Q ss_pred CCCEEEEecCC------CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCC--cEEEeecccCceeee
Q 009266 72 DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERGGVET 143 (538)
Q Consensus 72 ~g~~l~t~~~d------~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~ 143 (538)
++++++.||.+ ..+.+||..+.+-...-.......-.+++... ++.+++.|+.++ .+.+||+.+......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 67788887753 35788998876532211001111112233323 678888887654 689999988766543
Q ss_pred ee---ccccCCCcEEEEEcCCCCcEEEEEcCC-------CcEEEEecCCCCe-----eeeeeecccCCCCCcceeeeeEE
Q 009266 144 KL---LGKHQGRAHKLAIEPGSPHVFYTCGED-------GLVQHFDLRTGAA-----TELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 144 ~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
.. +........++.+.....++++.|+.. ..+.+||+.+... -..+...+.... ....+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R------~~~~~ 602 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR------YGSQI 602 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC------BSCEE
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc------ccceE
Confidence 22 111222233455565523677777752 4588999988772 111111111111 11222
Q ss_pred EEEcCCCCcEEEEEeC--------CCeEEEEEcCCcccc
Q 009266 209 IAIDPRNANLFAVAGS--------DEYTRLYDIRKYKWD 239 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~--------dg~v~iwd~~~~~~~ 239 (538)
+.+. + +.+++.|+. -..|.+||+.+.++.
T Consensus 603 ~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 603 KYIT-P-RKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEE-T-TEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEeC-C-CEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 3332 2 467777774 345888888877653
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.45 E-value=0.67 Score=44.27 Aligned_cols=287 Identities=11% Similarity=0.044 Sum_probs=149.4
Q ss_pred EEEEecCCCeEEEEECCCCceeeeecc--------------------C----CCCCeEEEEEee---cCCCceEEEEe-C
Q 009266 75 ILISGSDDRRVILWDWKTERVKLSFHS--------------------G----HNDNVFQAKIMP---FTDDRSIVTCA-A 126 (538)
Q Consensus 75 ~l~t~~~d~~i~iw~~~~~~~~~~~~~--------------------~----~~~~v~~l~~~~---~~~~~~l~s~~-~ 126 (538)
.+.||+..|.|+|+-+.+++.+..+.. . ..+......+|. ..+|++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 477899999999999999887665510 0 011222222222 01567787776 4
Q ss_pred CCcEEEeecccCceeeeeeccccCCCcEEEEEc--CCCCcEEEEEcC-------CCcE------------EEEecCCCCe
Q 009266 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE--PGSPHVFYTCGE-------DGLV------------QHFDLRTGAA 185 (538)
Q Consensus 127 dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~-------dg~i------------~iwd~~~~~~ 185 (538)
...|...++...++.....+ .....+..++|. |+. .++++++. ||.. ...|..+.+.
T Consensus 152 n~RvAri~l~~~~~d~Ii~i-Pn~~~~Hg~~~~~~p~T-~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITV-PNVQAIHGLRLQKVPHT-KYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTEEEEEETTTTEEEEEEEC-TTCSCEEEEEECCSSBC-CEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred CcceEEEECCcEeeceeEeC-CCCcCcccccccccCCc-cEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence 66788888877776655433 355667888886 555 45666553 2221 1112222222
Q ss_pred eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCC---------------CeEEEEEcCCc-------cccCCCC
Q 009266 186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---------------EYTRLYDIRKY-------KWDGSTD 243 (538)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~v~iwd~~~~-------~~~~~~~ 243 (538)
..++... ..+..+...++ +.+.++.+.+ ..+.+++++.. +....-.
T Consensus 230 ~~Qv~v~-----------gnld~~~~~~~-g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 230 AFQVIVD-----------GNLDNTDADYT-GRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEEES-----------SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEEcC-----------CChhhcCCCCC-CCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 2222111 12223444565 4455554433 24667776532 1110000
Q ss_pred CCCCCcccC-------CCCccCCCccceEEEEEcCCCCEEEEEc--CCeEEEeeccCCCCCCCCCCCCccccccccccCC
Q 009266 244 FGQPADYFC-------PPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (538)
Q Consensus 244 ~~~~~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (538)
.+.++---. .....-.-......+.++|+|+++++++ ..++.++++........
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~----------------- 360 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFA----------------- 360 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHT-----------------
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhh-----------------
Confidence 001110000 0000001123456788999999999888 45899999874110000
Q ss_pred CCccccCCCCCCCCcccCCcee-eccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccCc----------ceeEEeec
Q 009266 315 DHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----------ELIRVIEA 383 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~----------~~~~~~~~ 383 (538)
.. . ......+ ..-.-.......+| .++|....+---|..|..|++... ..+..+..
T Consensus 361 ----------~k-~-~~~~~~~~ae~e~GlGPlHt~F-d~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv 427 (638)
T 3sbq_A 361 ----------GK-L-ADPRDVIVGEPELGLGPLHTTF-DGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV 427 (638)
T ss_dssp ----------TC-C-SCGGGGEEECCBCCSCEEEEEE-CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC
T ss_pred ----------cc-c-cCcccceEeeccCCCcccEEEE-CCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccc
Confidence 00 0 0000000 00011112567777 999966667778999999999764 45566665
Q ss_pred CcceeeEE-----eecCCCCeEEEeec
Q 009266 384 DRHVVNCI-----EPHPHSTVLASSGI 405 (538)
Q Consensus 384 h~~~v~~~-----~~s~~~~~l~s~~~ 405 (538)
|-.+-... .-.|+|++|++...
T Consensus 428 ~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 428 HYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp SSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred ccCCcccccCCCccCCCCccEEEEecc
Confidence 55433222 23678999998854
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.38 E-value=0.32 Score=49.21 Aligned_cols=158 Identities=9% Similarity=0.125 Sum_probs=84.7
Q ss_pred CCCCEEEEecCC----CeEEEEECCCCceeeee-------ccCCCCCeEEEEEeecCCCceEEEEeCC------CcEEEe
Q 009266 71 TDGDILISGSDD----RRVILWDWKTERVKLSF-------HSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHA 133 (538)
Q Consensus 71 ~~g~~l~t~~~d----~~i~iw~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~~~l~s~~~d------g~v~vw 133 (538)
.++.+++.||.. ..+.+|+..+++..... .......-..+.+.. ++.+++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEEE
Confidence 457778888753 46888998877542221 011111222233322 45667777643 357888
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC--cEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
|+.+........+...... .+++...++ ++++.|+.++ .+.+||+.+.+-...-..... .. ......++.+
T Consensus 474 d~~t~~W~~~~~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~-p~----~r~~~~a~v~ 546 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEF-FQ----NSLVSAGLEF 546 (695)
T ss_dssp ETTTTEEEECCCCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGG-GG----SCCBSCEEEE
T ss_pred eCCCCcEEECCCCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCC-CC----cccceeEEEE
Confidence 8887765543223222222 233332355 6788887654 699999988754332210000 00 1111233555
Q ss_pred cCCCCcEEEEEeC--C-----CeEEEEEcCCcc
Q 009266 212 DPRNANLFAVAGS--D-----EYTRLYDIRKYK 237 (538)
Q Consensus 212 ~~~~~~~l~~~~~--d-----g~v~iwd~~~~~ 237 (538)
....+.+++.|+. + ..+.+||+.+.+
T Consensus 547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 5433567777765 2 468899998876
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.25 E-value=0.23 Score=45.57 Aligned_cols=141 Identities=11% Similarity=0.029 Sum_probs=64.9
Q ss_pred CeEEEEECCCCceeeeeccCCCCCe-EEEEEeecCCCceEEEEeC------CCcEEEeec--ccCceeeeeeccccCCCc
Q 009266 83 RRVILWDWKTERVKLSFHSGHNDNV-FQAKIMPFTDDRSIVTCAA------DGQVRHAQI--LERGGVETKLLGKHQGRA 153 (538)
Q Consensus 83 ~~i~iw~~~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~~l~s~~~------dg~v~vwd~--~~~~~~~~~~~~~~~~~v 153 (538)
..+.+||+.+.+-...-.......- .+++.. ++.+++.|+. ...+.++++ .+........+.......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK---GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE---TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE---CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 5789999887654222111111111 233333 6677777764 345677776 544443322222111111
Q ss_pred EEEEEcCCCCcEEEEEcCC----------------------CcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEE
Q 009266 154 HKLAIEPGSPHVFYTCGED----------------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (538)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (538)
...+...++ ++++.|+.. ..+.+||+.+.+-...-..... . ....++.+
T Consensus 245 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r------~~~~~~~~ 315 (357)
T 2uvk_A 245 GGFAGISND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--R------AYGVSLPW 315 (357)
T ss_dssp SCEEEEETT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--C------BSSEEEEE
T ss_pred cceEEEECC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--c------ccceeEEe
Confidence 111222234 677777632 2578899887765433221111 0 01122222
Q ss_pred cCCCCcEEEEEeCCC------eEEEEEcCCccc
Q 009266 212 DPRNANLFAVAGSDE------YTRLYDIRKYKW 238 (538)
Q Consensus 212 ~~~~~~~l~~~~~dg------~v~iwd~~~~~~ 238 (538)
++++++.|+.++ .|.++++.++++
T Consensus 316 ---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 316 ---NNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp ---TTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred ---CCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 257888888543 355667777654
No 346
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=95.94 E-value=0.66 Score=42.42 Aligned_cols=190 Identities=12% Similarity=0.141 Sum_probs=101.6
Q ss_pred cEEEEecCCC--CeeeeeeecccCCCCCcceeeeeEEEEEc---CC----CCcEEEEEeCCCeEEEEEcCCccccCCCCC
Q 009266 174 LVQHFDLRTG--AATELFTCRPIDDRRNYMTVVNLNAIAID---PR----NANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (538)
Q Consensus 174 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (538)
.|.+||+.+. +.++.+........ ....+..+++. |. ++...++=...+.|.+||+.+++.-+....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~----~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE----KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC----CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc----cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC
Confidence 5778999998 88888776543222 12357777777 21 222334444577899999998764322110
Q ss_pred CCCCcccCCC----CccCCC----ccceEEEEEcCC----CCEEEEEcCCeEEEeeccCCCCCCCCCCCCcccccccccc
Q 009266 245 GQPADYFCPP----NLIGDE----QVGITGLAFSDQ----SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (538)
Q Consensus 245 ~~~~~~~~~~----~~~~~~----~~~i~~~~~s~~----~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
.+.+. ....+. ...+..|+++|+ ++.|....-..-++|.+.+......-
T Consensus 200 -----~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~-------------- 260 (381)
T 3q6k_A 200 -----TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG-------------- 260 (381)
T ss_dssp -----GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT--------------
T ss_pred -----CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc--------------
Confidence 00010 000111 247899999998 77777666444445554432111000
Q ss_pred CCCCccccCCCCCCCCcccCCceeeccccc-eeeeEEEEec-CCCcEEEEeccCCeEEEeeccC-c---ceeEEeecCc-
Q 009266 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFG-PKCEYVVSGSDCGRIFIWKKKG-G---ELIRVIEADR- 385 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~~s-~~~~~l~~gs~dg~i~iwd~~~-~---~~~~~~~~h~- 385 (538)
.....+.+ +.+.+ .....+++ . .+|.++++--....|..|+..+ . +....+....
T Consensus 261 ----------------~~~~v~~~-G~kg~~s~~~~~~~-D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~ 322 (381)
T 3q6k_A 261 ----------------GKLNPELL-GNRGKYNDAIALAY-DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSR 322 (381)
T ss_dssp ----------------CCCCCEEE-EECCTTCCEEEEEE-CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTT
T ss_pred ----------------hhhceEEe-eecCCCCCcceEEE-eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCC
Confidence 01112222 22221 11234444 5 5788788888889999999865 1 1223332111
Q ss_pred -ceeeEEeecCCCCeEEEee
Q 009266 386 -HVVNCIEPHPHSTVLASSG 404 (538)
Q Consensus 386 -~~v~~~~~s~~~~~l~s~~ 404 (538)
..+..+++.+++.+.+.++
T Consensus 323 l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 323 FVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CCSEEEEEECTTSCEEEEEC
T ss_pred ccccCeEEECCCCeEEEEEC
Confidence 3467777777776555553
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.63 E-value=1.1 Score=39.72 Aligned_cols=173 Identities=6% Similarity=-0.001 Sum_probs=86.1
Q ss_pred cCCCCEEEEec--CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCC--------------CcEEEe
Q 009266 70 NTDGDILISGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------------GQVRHA 133 (538)
Q Consensus 70 s~~g~~l~t~~--~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d--------------g~v~vw 133 (538)
+++|.+|.... ..+.|...+.. |....++. .. .+--+++ ++.+|+-+... ..|+..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~-~~----~~~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLS-ND----TAMYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEE-EE----EEEEEEE--CSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEcc-CC----ceeeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 34566666553 24556666654 33334442 11 1334577 88888877643 345666
Q ss_pred ecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEE---cCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEE
Q 009266 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC---GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (538)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (538)
++....... +.. . .+..|++.+..+.++- .....|...++.... ...+... .+ .+
T Consensus 94 ~~dg~~~~~---l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~------------~~--~~ 151 (302)
T 3s25_A 94 KRNGHGSTV---LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNH------------YL--FT 151 (302)
T ss_dssp ETTSCCCEE---EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESS------------CC--CC
T ss_pred eCCCCcceE---eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCC------------Cc--eE
Confidence 665443322 211 1 1236777775444444 234456666665433 2333211 11 34
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEc-C-C-eEEEe
Q 009266 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-E-FIYLF 287 (538)
Q Consensus 211 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~-~-~i~~~ 287 (538)
|+|.++.++.+......|...++..+.. ..+... .. ...+.|++.+|+-.. . + .|..-
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~---------------~~l~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~ 212 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSE---------------ALFYDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHV 212 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEE---------------EEEECS---CE-EEEEEEETTEEEEEEGGGTTEEEEE
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCE---------------EEEeCC---Cc-cceeeecCCEEEEEEcCCCcEEEEE
Confidence 5666545555544456777777665431 011111 11 234568888877654 2 2 56665
Q ss_pred eccC
Q 009266 288 TQDM 291 (538)
Q Consensus 288 d~~~ 291 (538)
++..
T Consensus 213 ~ldG 216 (302)
T 3s25_A 213 NINN 216 (302)
T ss_dssp CSSS
T ss_pred ECCC
Confidence 5554
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.32 E-value=2.1 Score=40.98 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=68.2
Q ss_pred EEeeccCCceEEeeeccCceecc--ccchhhcccccceEEe-eeee---EEcCCcCcEE--EEEEc---CCCCEEEEec-
Q 009266 13 ARTSVDKALVDVWLRELGQLSTR--NFALRRRASEDLVLRL-GIYA---KLDKHRGCVN--TVSFN---TDGDILISGS- 80 (538)
Q Consensus 13 l~t~~~d~~v~iwd~~~g~~~~~--~~~~~~~~~~~~~~~~-~~~~---~~~~h~~~v~--~~~~s---~~g~~l~t~~- 80 (538)
+.+|+..|.|+|+=+.+++.+.. +|.+-...+....-.- +++. .+. .+... .+++. .+|+||+.-.
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~--~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFL--NGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCC--CCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCcc--CCCcCCCcccccCCeeeeEEEEEecC
Confidence 88999999999999999998876 4554222222221000 0000 000 11111 23332 2678887765
Q ss_pred CCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeC
Q 009266 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (538)
Q Consensus 81 ~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~ 126 (538)
.+..|..-++...++-..+.......+..++|-...+..+++.++.
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence 4677888899888875555456677888888862117778887764
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.12 E-value=1.7 Score=38.61 Aligned_cols=108 Identities=9% Similarity=0.063 Sum_probs=60.0
Q ss_pred EEEcCCCCEEEEecCC--------------CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEe--CCCcE
Q 009266 67 VSFNTDGDILISGSDD--------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQV 130 (538)
Q Consensus 67 ~~~s~~g~~l~t~~~d--------------~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~--~dg~v 130 (538)
--++++|.+|.-+... ..|+..++..++. ..+ ... . +..|++ ++++|+-+. .++.-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l-~~~--~--~~~~s~--~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVL-DPD--P--CIYASL--IGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEE-ECS--C--EEEEEE--ETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEe-ecC--C--ccEEEE--eCCEEEEEeecCCCCc
Confidence 3457788888766442 3577777765543 222 111 1 236788 888888766 34444
Q ss_pred EEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeee
Q 009266 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE 187 (538)
Q Consensus 131 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 187 (538)
.|+.+......... +..+.. .+|+|.+..+..+......|.+.++..+....
T Consensus 130 ~Iy~~~~dGs~~~~-lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~ 181 (302)
T 3s25_A 130 SLYRIRIDGEEKKK-IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL 181 (302)
T ss_dssp EEEEEETTSCCCEE-EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE
T ss_pred eEEEEECCCCCeEE-EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE
Confidence 44444322111111 322322 45677886555565546788888887665443
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.86 E-value=3.1 Score=36.41 Aligned_cols=230 Identities=13% Similarity=0.027 Sum_probs=121.7
Q ss_pred CCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCC
Q 009266 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (538)
Q Consensus 104 ~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (538)
...|..|+... .+.+.-. +|.|..|-......+... ......|..|+..... .++. . +|.|..|-....
T Consensus 23 ~~~i~~ia~G~----~h~~~l~-~G~v~~wG~n~~Gqlg~p--~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~ 91 (282)
T 3qhy_B 23 QSGVDAIAGGY----FHGLALK-GGKVLGWGANLNGQLTMP--AATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNED 91 (282)
T ss_dssp SSSCCEEEECS----SEEEEEE-TTEEEEEECCSSSTTSCC--GGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTT
T ss_pred cCCCcEEEeCC----CeEEEEE-CCEEEEEeCCCCCCCCCC--ccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCC
Confidence 34677777653 3333335 899999987654333221 1123467788776643 3444 4 899999976543
Q ss_pred CeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccc
Q 009266 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (538)
..+.... . ....|..++.... +.+.-. +|.|+.|-....-... .|. .....
T Consensus 92 Gqlg~P~---~-------~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg-----~~~----------~~~~~ 142 (282)
T 3qhy_B 92 GQTTVPA---E-------ARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTT-----VPA----------EAQSG 142 (282)
T ss_dssp STTCCCG---G-------GSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTS-----CCG----------GGGSS
T ss_pred CCCCCCc---c-------cCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCC-----CCc----------cCCCC
Confidence 3222100 0 1125777777653 333334 9999999876532111 111 11345
Q ss_pred eEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccce
Q 009266 264 ITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (538)
Q Consensus 264 i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
|..++......+++ . ++.|+.|-.....+... + ..+ ..
T Consensus 143 i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gqlg~----------------------------------p-~~~---~~-- 180 (282)
T 3qhy_B 143 VTALDGGVYTALAV-K-NGGVIAWGDNYFGQTTV----------------------------------P-AEA---QS-- 180 (282)
T ss_dssp EEEEEECSSEEEEE-E-TTEEEEEECCTTSTTSC----------------------------------C-GGG---GS--
T ss_pred eEEEEcccCEEEEE-E-CCEEEEecCCCCCCCCC----------------------------------c-eec---CC--
Confidence 77776654443333 3 78899997654211100 0 000 11
Q ss_pred eeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeecCcceeeEEeecCCCCeEEEeecCCceEEecCCCCccccc
Q 009266 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422 (538)
Q Consensus 344 ~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 422 (538)
.|..++. ... ..++. .+|.|+.|=......+..-......|..++......+++ . +|.|+.|-.....+..+
T Consensus 181 ~v~~i~~-G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al-~--~g~v~~wG~n~~gq~~v 252 (282)
T 3qhy_B 181 GVDDVAG-GIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL-K--NGKVIAWGSSRTAPSSV 252 (282)
T ss_dssp SEEEEEE-CSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE-E--TTEEEEESTTCCCCGGG
T ss_pred CeEEEEe-cCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE-E--CCEEEEecCCCCccccC
Confidence 2666665 332 33444 589999997654322221111123566776654433333 3 89999998776544444
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.29 E-value=5 Score=42.18 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.2
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~ 99 (538)
..|.+++..++..+|+|-+.|+++|||++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 46788888888899999999999999999999887654
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.01 E-value=11 Score=35.76 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=58.7
Q ss_pred CcEEEEEEcCCCC-EEEEecCCCeEEEEECCCCc---eeeee----cc----CCCCCeEEEEEeecCC----CceEEEEe
Q 009266 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTER---VKLSF----HS----GHNDNVFQAKIMPFTD----DRSIVTCA 125 (538)
Q Consensus 62 ~~v~~~~~s~~g~-~l~t~~~d~~i~iw~~~~~~---~~~~~----~~----~~~~~v~~l~~~~~~~----~~~l~s~~ 125 (538)
..-+.|+|.|+|. .|+.+...|.|++++..... .+..+ .. .....+..|+|+| + +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P--~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP--NYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT--THHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC--CCcCCCEEEEEEe
Confidence 3467899999985 34445677999999753221 11211 11 1145688999998 5 33434333
Q ss_pred C--C----------CcEEEeecccC----------ceeeeeeccccCCCcEEEEEcCCCCcEEEEEcCC
Q 009266 126 A--D----------GQVRHAQILER----------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (538)
Q Consensus 126 ~--d----------g~v~vwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 172 (538)
. + ..|.-|.+... +.+..............|+|.|++ +++++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~ 159 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDG 159 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCC
Confidence 2 1 13444554321 111111112223456889999999 566665543
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.92 E-value=9.7 Score=35.13 Aligned_cols=167 Identities=9% Similarity=-0.000 Sum_probs=75.1
Q ss_pred cCcEEEEEEcC--CCCEEEEecCCC----eEEEEECCCCceeeeeccC-------------CCCCeEEEEEeecCC-Cce
Q 009266 61 RGCVNTVSFNT--DGDILISGSDDR----RVILWDWKTERVKLSFHSG-------------HNDNVFQAKIMPFTD-DRS 120 (538)
Q Consensus 61 ~~~v~~~~~s~--~g~~l~t~~~d~----~i~iw~~~~~~~~~~~~~~-------------~~~~v~~l~~~~~~~-~~~ 120 (538)
...|.+|++.| .+.++|.+. .| .|... ...|+.-..+... +...|.+|++.|. + ...
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAAR-TGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHA-SEPGT 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEE-C--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCT-TSTTC
T ss_pred CCceEEEEECCCCCCeEEEEec-CCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCC-CCCCE
Confidence 45799999998 555555443 33 33332 2333321111110 1125778888862 2 456
Q ss_pred EEEEeCCCcEEEeecccCceeeeeecc----------------ccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCC
Q 009266 121 IVTCAADGQVRHAQILERGGVETKLLG----------------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (538)
Q Consensus 121 l~s~~~dg~v~vwd~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 184 (538)
|+.++..+.|...+-..........+. .....+.+|.+.|..+..|+.+...+.|.... ..++
T Consensus 131 l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~ 209 (394)
T 3b7f_A 131 WYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT 209 (394)
T ss_dssp EEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS
T ss_pred EEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC
Confidence 666665555444321111111110010 11235788999885333445554444444332 2222
Q ss_pred eeeeeeec-ccCCCC--CcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 009266 185 ATELFTCR-PIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (538)
Q Consensus 185 ~~~~~~~~-~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 232 (538)
.-..+... .....+ .......+.+|+++|.+...|+++...+ |...+
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 22211110 000000 0000124789999986556677666544 44433
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.65 E-value=8.1 Score=33.72 Aligned_cols=183 Identities=14% Similarity=0.066 Sum_probs=98.0
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 142 (538)
.|..|+....- .++. . +|.|..|-......+.. .......|..|+... ...++. . +|.|..|-......+.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~---~hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGN---YHSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECS---SEEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCC---CEEEEE-E-CCEEEEeeCCCCCCCC
Confidence 56666665432 2333 4 78899997543222111 112234677777653 333444 4 8999999866443322
Q ss_pred eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEE
Q 009266 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (538)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 222 (538)
. ...-...|..|+..... .++ -. +|.|+.|-......+.... . ....|..++.... ..++.
T Consensus 96 ~--P~~~~~~v~~ia~G~~h--s~a-l~-~G~v~~wG~n~~gqlg~~~-~---------~~~~i~~i~~G~~--~~~~l- 156 (282)
T 3qhy_B 96 V--PAEARSGVDAIAAGAWA--SYA-LK-DGKVIAWGDDSDGQTTVPA-E---------AQSGVTALDGGVY--TALAV- 156 (282)
T ss_dssp C--CGGGSSSEEEEEEETTE--EEE-EE-TTEEEEEECCTTSTTSCCG-G---------GGSSEEEEEECSS--EEEEE-
T ss_pred C--CcccCCCeEEEECcCCE--EEE-Ee-CCeEEEecCCCCCcCCCCc-c---------CCCCeEEEEcccC--EEEEE-
Confidence 1 11113467788777643 233 34 8999999765433221100 0 1224677766543 33333
Q ss_pred eCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccC
Q 009266 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 223 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (538)
. +|.|..|-........ .|. . ....|..++......++ . .++.|+.|-...
T Consensus 157 ~-~G~v~~wG~n~~gqlg-----~p~------~----~~~~v~~i~~G~~hs~a-l-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 157 K-NGGVIAWGDNYFGQTT-----VPA------E----AQSGVDDVAGGIFHSLA-L-KDGKVIAWGDNR 207 (282)
T ss_dssp E-TTEEEEEECCTTSTTS-----CCG------G----GGSSEEEEEECSSEEEE-E-ETTEEEEEECCT
T ss_pred E-CCEEEEecCCCCCCCC-----Cce------e----cCCCeEEEEecCCEEEE-E-ECCeEEEEECCC
Confidence 3 7999999876532211 111 1 12457777765544433 3 688999997654
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.60 E-value=22 Score=35.85 Aligned_cols=207 Identities=8% Similarity=-0.028 Sum_probs=101.7
Q ss_pred cEEEEE-EcCCCCEEEEe----cC-CCeEEEEECCCCceeeeeccC-CCC------CeEEEEEeecCCCceEEEE-----
Q 009266 63 CVNTVS-FNTDGDILISG----SD-DRRVILWDWKTERVKLSFHSG-HND------NVFQAKIMPFTDDRSIVTC----- 124 (538)
Q Consensus 63 ~v~~~~-~s~~g~~l~t~----~~-d~~i~iw~~~~~~~~~~~~~~-~~~------~v~~l~~~~~~~~~~l~s~----- 124 (538)
....+. ++|++++++.+ |. -..|+++|+.+++.+..-+.. -+. ....++|.. +..++++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d--~~~~~~~~~~~~~ 207 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN--KDTIIFNLVLHKN 207 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE--TTEEEECCCCSTT
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC--CCEEEEEeCCCCC
Confidence 455566 89999877753 22 346999999998875432121 001 123458875 55555542
Q ss_pred -----eCCCcEEEeecccCceeeeeeccccCCCc-EEEEEcCCCCc----EEEEEcC---CCcEEEEecCCCC-eeeeee
Q 009266 125 -----AADGQVRHAQILERGGVETKLLGKHQGRA-HKLAIEPGSPH----VFYTCGE---DGLVQHFDLRTGA-ATELFT 190 (538)
Q Consensus 125 -----~~dg~v~vwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~----~l~s~~~---dg~i~iwd~~~~~-~~~~~~ 190 (538)
+.-.+|+.|.+-+........+.+....+ ..+..++++.. ++++.+. ...+.+.++.... ....+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 12356888888765433322343333333 33445566543 3444332 2345666654321 111221
Q ss_pred ecccCCCCCcceeeeeEEEEEcCCCCcEEEEE----------eCCCeEEEEEcCCccccCCCCCCCCCcccCCCC-ccCC
Q 009266 191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA----------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN-LIGD 259 (538)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 259 (538)
... . ..+..++. +.+++.. ...+.|.+.++.+..... ........ +...
T Consensus 288 ~~~-----------~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~ 347 (711)
T 4hvt_A 288 MPS-----------D-ATLQGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTE-------SDKTSLKILFTPT 347 (711)
T ss_dssp SCT-----------T-CEEEEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCG-------GGCTTCEEEECCC
T ss_pred cCC-----------c-ceEeeeEC-CEEEEEECcccccccccCCCCeEEEEECCcccccc-------cccccceEEECCC
Confidence 111 0 11222333 4454432 246778888887642100 00000011 1222
Q ss_pred CccceEEEEEcCCCCEEEEEc-CC--eEEEeeccCC
Q 009266 260 EQVGITGLAFSDQSELLVSYN-DE--FIYLFTQDMG 292 (538)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~-~~--~i~~~d~~~~ 292 (538)
....+..+.+.++. ++++.. ++ .|+++++.++
T Consensus 348 ~~~~l~~~~~~~~~-l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 348 ANEVFNFISTTKDR-VFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp TTEEEEEEEECSSC-EEEEEEETTEEEEEEECEETT
T ss_pred CCCeEEEEEEECCE-EEEEEEECCEEEEEEEECCCC
Confidence 34578889998764 444444 44 5778876543
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.32 E-value=20 Score=33.91 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=34.3
Q ss_pred CCeEEEEEeecCCCc-eEEEEeCCCcEEEeecccCce-eeeeecc---------ccCCCcEEEEEcCC
Q 009266 105 DNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGG-VETKLLG---------KHQGRAHKLAIEPG 161 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~-~l~s~~~dg~v~vwd~~~~~~-~~~~~~~---------~~~~~v~~~~~~~~ 161 (538)
...+.|+|.| ++. .|+++...|.|++++...... .....+. .....+..|+|+|+
T Consensus 14 ~~P~~~a~~p--dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSG--DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCS--SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECC--CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999 886 566667789999997532210 0100011 11356788999996
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=85.84 E-value=21 Score=32.78 Aligned_cols=213 Identities=13% Similarity=0.111 Sum_probs=103.4
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCC-c---------eeeeeccC-CCCCeEEEEEeecCCCceEEEEeCCCcEE
Q 009266 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTE-R---------VKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~-~---------~~~~~~~~-~~~~v~~l~~~~~~~~~~l~s~~~dg~v~ 131 (538)
.+..++++.-..+.+.-..+|.|..|-.... + ........ ....|..|+. ...+.+....+|.|.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~----G~~hs~alt~~G~v~ 181 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA----GGAHSACVTAAGDLY 181 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE----CSSEEEEEETTSCEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe----CcCeEEEEeCCCeEE
Confidence 4555666655556666677888999954321 0 11111111 1224555554 446666777889999
Q ss_pred EeecccCce---------eeeeeccc-cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee------eeeeecccC
Q 009266 132 HAQILERGG---------VETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT------ELFTCRPID 195 (538)
Q Consensus 132 vwd~~~~~~---------~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~ 195 (538)
.|-...... .....+.. ....|..++..... ...++...+|.|+.|-......+ .........
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 260 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID 260 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG
T ss_pred EeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec
Confidence 997543111 11111111 22356666665422 34455667899999964321111 000000000
Q ss_pred CCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCE
Q 009266 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (538)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 275 (538)
.. ....|..++.-. .+.++-..+|.|+.|-....-.+..-. ......|..+.......|..++.... ..
T Consensus 261 ~~----~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~l~~~~v~~ia~G~~-h~ 329 (389)
T 3kci_A 261 SL----TGLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGS---DDHVRRPRQVQGLQGKKVIAIATGSL-HC 329 (389)
T ss_dssp GG----TTSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSS---CCCEEEEEECGGGTTCCEEEEEECSS-EE
T ss_pred cc----CCCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCC---CccccCCeEeccCCCCCEEEEEeccC-eE
Confidence 00 111355555543 345555789999999876533222111 10011111111111234666655332 34
Q ss_pred EEEEcCCeEEEeeccC
Q 009266 276 LVSYNDEFIYLFTQDM 291 (538)
Q Consensus 276 l~~~~~~~i~~~d~~~ 291 (538)
++...++.|+.|-...
T Consensus 330 ~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 330 VCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEETTCCEEEEECCT
T ss_pred EEECCCCCEEEeeCCC
Confidence 5556678899997654
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.93 E-value=18 Score=38.06 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeee
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 191 (538)
.+.+++..++. .++++-+.|+++|+|++.+++++.....
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 46677777776 6889999999999999999998877544
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=84.46 E-value=36 Score=34.27 Aligned_cols=73 Identities=5% Similarity=0.051 Sum_probs=42.6
Q ss_pred cceeeeEEEEecCCCcEEEEeccCC--eEEEeeccCcc-eeEE-eecC-cceeeEEeecCCCCe-EEEee---cCCceEE
Q 009266 341 NCVTVKGVNFFGPKCEYVVSGSDCG--RIFIWKKKGGE-LIRV-IEAD-RHVVNCIEPHPHSTV-LASSG---IESDIKI 411 (538)
Q Consensus 341 ~~~~i~~v~~~s~~~~~l~~gs~dg--~i~iwd~~~~~-~~~~-~~~h-~~~v~~~~~s~~~~~-l~s~~---~dg~v~v 411 (538)
....+..+.+ ..+ .++++...++ .|+++++.+++ .+.. +... .+.+..+.+++++.. +++.+ .-+.+..
T Consensus 348 ~~~~l~~~~~-~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~ 425 (711)
T 4hvt_A 348 ANEVFNFIST-TKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYL 425 (711)
T ss_dssp TTEEEEEEEE-CSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEE
T ss_pred CCCeEEEEEE-ECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEE
Confidence 3335778887 554 5777777776 46777776664 2333 3222 245666677777764 33333 2356777
Q ss_pred ecCC
Q 009266 412 LTPN 415 (538)
Q Consensus 412 w~~~ 415 (538)
+++.
T Consensus 426 ~d~~ 429 (711)
T 4hvt_A 426 WVKT 429 (711)
T ss_dssp ECTT
T ss_pred EeCC
Confidence 7765
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.35 E-value=28 Score=32.02 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=47.1
Q ss_pred CEEEEecCCCeEEEEECCC-Cceeeee-ccCCCCCeEEEEEeecCCCceEEEEeCCC----cEEEeecccCce-eeeee-
Q 009266 74 DILISGSDDRRVILWDWKT-ERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADG----QVRHAQILERGG-VETKL- 145 (538)
Q Consensus 74 ~~l~t~~~d~~i~iw~~~~-~~~~~~~-~~~~~~~v~~l~~~~~~~~~~l~s~~~dg----~v~vwd~~~~~~-~~~~~- 145 (538)
..|..|+..| +.+++... +..-..+ .......|.+|++.|. +...|+.++..| .|.... ..++. .....
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~-~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPR-EPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSS-STTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCC-CCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 3566676666 55554332 2221111 0122357999999873 345555555444 333322 11211 11100
Q ss_pred --ccc--------cCCCcEEEEEcCCC-CcEEEEEcCCCcEEEE
Q 009266 146 --LGK--------HQGRAHKLAIEPGS-PHVFYTCGEDGLVQHF 178 (538)
Q Consensus 146 --~~~--------~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iw 178 (538)
+.. +...|.+|++.|.. +..|++++..+.|...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 111 11247788898732 3445666555555544
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.17 E-value=2.8 Score=45.16 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=32.3
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~ 99 (538)
..|.+++..++..+|+|-+.|+++|||++.+++++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 35666777788899999999999999999999987664
No 362
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=80.82 E-value=36 Score=31.64 Aligned_cols=115 Identities=11% Similarity=0.006 Sum_probs=61.4
Q ss_pred CeEEEEEeecCCCceEEEEeCCCcEEEeecccCceee----------eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcE
Q 009266 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE----------TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (538)
.|..|+. ...+.+....+|.|..|-......+- ..........|..|+... ...+....+|.|
T Consensus 76 ~v~~va~----G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v 148 (423)
T 3mvd_K 76 DAVDISA----GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRV 148 (423)
T ss_dssp SEEEEEE----CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCE
T ss_pred CceEEee----CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeE
Confidence 4655554 55677777888999999754321110 000111234566666654 334555678999
Q ss_pred EEEec--CCCCeeee------eeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 176 QHFDL--RTGAATEL------FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 176 ~iwd~--~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
+.|-. .....+.. ...... . ....|..|+... .+.++-..+|.|+.|-....
T Consensus 149 ~~wG~~~n~~GqlG~~~~~~~~~p~~~--~----~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~ 208 (423)
T 3mvd_K 149 FAWGSFRDSHGNMGLTIDGNKRTPIDL--M----EGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQ 208 (423)
T ss_dssp EEEECEECSSSEEESBTTBCEEEEEES--S----TTCCEEEEEECS---SEEEEEETTSCEEEEECCTT
T ss_pred EEEeCCCCCCCCcCcCCCCCCceeeEe--c----CCCcEEEEecCC---CeEEEEecCCeEEEeeCCcC
Confidence 99975 22111110 000000 0 112466666543 45566678999999986543
No 363
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=80.75 E-value=54 Score=33.61 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=58.5
Q ss_pred CCCeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccc----cCCCcEEEEEcCCCCcEEEEEcCCCc----E
Q 009266 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK----HQGRAHKLAIEPGSPHVFYTCGEDGL----V 175 (538)
Q Consensus 104 ~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~dg~----i 175 (538)
.+.|.+|+++|. +...+++++..+.|....=............. ....|.+|++.|..+..++.+..... -
T Consensus 14 ~g~i~~i~~~p~-~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPK-TKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSS-STTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCC-CCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 458999999982 34566777766665444321111221110010 13469999999865455555443211 3
Q ss_pred EEEec-CCCCeeeeeeecccCCCCC-cceeeeeEEEEEcCCCCcEEEEEeCCCe
Q 009266 176 QHFDL-RTGAATELFTCRPIDDRRN-YMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (538)
Q Consensus 176 ~iwd~-~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 227 (538)
.||.. ..++.-..+..... ..+ ......+..++++|.+...++++...+.
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~--~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFP--MGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp EEEEESSTTSEEEEEECSSC--CCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred EEEEECCCCCcceeccCCcc--cCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 34433 33333222221100 000 0000124568888865567777664443
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.47 E-value=40 Score=30.77 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=66.5
Q ss_pred cCcEEEEEEc---CC----CCE-EEEecCCCeEEEEECCCCceeeeec---cCC--------------CCCeEEEEEeec
Q 009266 61 RGCVNTVSFN---TD----GDI-LISGSDDRRVILWDWKTERVKLSFH---SGH--------------NDNVFQAKIMPF 115 (538)
Q Consensus 61 ~~~v~~~~~s---~~----g~~-l~t~~~d~~i~iw~~~~~~~~~~~~---~~~--------------~~~v~~l~~~~~ 115 (538)
...+..+++. |. +.+ .++=+..+.|.|+|+.+++.-+... ... ...|..|+.+|
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp- 229 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD- 229 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC-
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecC-
Confidence 3467777777 22 222 2333456789999999887533221 010 23688888988
Q ss_pred CC----CceEEEEeCCCcEEEeecccC-----ceeeeeeccccC---CCcEEEEEc-CCCCcEEEEEcCCCcEEEEecCC
Q 009266 116 TD----DRSIVTCAADGQVRHAQILER-----GGVETKLLGKHQ---GRAHKLAIE-PGSPHVFYTCGEDGLVQHFDLRT 182 (538)
Q Consensus 116 ~~----~~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~~~~---~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~ 182 (538)
+ ++.|+-....+ -++|.+.+. .........+.. ..-..+++. .+| .++++--....|..|+..+
T Consensus 230 -~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 230 -RDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -CCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEEETTS
T ss_pred -CcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEEeCCC
Confidence 6 67777666544 244444321 110000111222 223345665 556 6777778888999999875
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=77.21 E-value=62 Score=32.34 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.2
Q ss_pred eeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEeec
Q 009266 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (538)
Q Consensus 345 i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 383 (538)
|.++.+ +..+|++-+.|.++|+|++.+++++.+..-
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444444 478999999999999999999998877654
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.42 E-value=54 Score=35.36 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=31.1
Q ss_pred eeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEEee
Q 009266 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (538)
Q Consensus 345 i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 382 (538)
+.+++. .++..+|++-+.|+++|||++.+++++.+..
T Consensus 240 ~vs~~~-~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIF-LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEE-ETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeec-cCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 455555 6788999999999999999999999987754
No 367
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=73.38 E-value=86 Score=32.11 Aligned_cols=157 Identities=10% Similarity=0.092 Sum_probs=75.5
Q ss_pred cCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeccC------CCCCeEEEEEeecCCCceEEEEeCCCc----
Q 009266 61 RGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (538)
Q Consensus 61 ~~~v~~~~~s~~-g~~l~t~~~d~~i~iw~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~~l~s~~~dg~---- 129 (538)
.+.|.+|+++|. ...+..++..+.|.... ..|+.-..+... ....|.+|++.|. +...++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~-~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPN-NPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETT-EEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCC-CCCEEEEEeCccCCCcc
Confidence 468999999995 34555555556555544 334432222111 1346999999872 2344444432211
Q ss_pred EEEeecccCcee-eeeecc----c---cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecC-CCCeeeeeeecccCCCCCc
Q 009266 130 VRHAQILERGGV-ETKLLG----K---HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNY 200 (538)
Q Consensus 130 v~vwd~~~~~~~-~~~~~~----~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~ 200 (538)
-.||....+... ...... . ....+..|++.|..+..++.+...+. ||-.. .++.-..+..... ...
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~--~~~- 166 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPD--AFT- 166 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCC--CCS-
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCcc--ccC-
Confidence 334433322211 111111 0 01135678888866566777664443 33322 2332222211000 000
Q ss_pred ceeeeeEEEEEcCCCCcEEEEEeCC
Q 009266 201 MTVVNLNAIAIDPRNANLFAVAGSD 225 (538)
Q Consensus 201 ~~~~~v~~~~~~~~~~~~l~~~~~d 225 (538)
....+..|.++|.++..++++..+
T Consensus 167 -~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 167 -NGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp -TTTCEEEEEECTTSTTCEEEEESS
T ss_pred -CCCCeEEEEECCCCCCEEEEEEcC
Confidence 112478899998655566666554
No 368
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=71.51 E-value=0.48 Score=43.49 Aligned_cols=7 Identities=14% Similarity=-0.268 Sum_probs=3.1
Q ss_pred eEEeecC
Q 009266 389 NCIEPHP 395 (538)
Q Consensus 389 ~~~~~s~ 395 (538)
+.|.|-+
T Consensus 272 t~I~WK~ 278 (417)
T 2ayu_A 272 CEISWKD 278 (417)
T ss_dssp CCCCBSC
T ss_pred cceeeec
Confidence 3344544
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.83 E-value=20 Score=35.06 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=42.0
Q ss_pred eeEEEEecCCCcEEEEecc------------CCeEEEeeccCcceeEEeecCc-ceeeEEeecCCCCeEEEe
Q 009266 345 VKGVNFFGPKCEYVVSGSD------------CGRIFIWKKKGGELIRVIEADR-HVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 345 i~~v~~~s~~~~~l~~gs~------------dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~ 403 (538)
.-.|+| +|.|+++++-.. ...+.+.+..++++.+.+.++. ..++.++|+|+++.|+..
T Consensus 478 PDNL~f-d~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGF-DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEE-CTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEE-CCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346777 999997765332 1346666777788777776654 689999999999977665
No 370
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=67.39 E-value=1.1e+02 Score=30.97 Aligned_cols=116 Identities=12% Similarity=-0.020 Sum_probs=56.5
Q ss_pred CeEEEEEeecCCCceEEEEeCCCcEEEeecccCceeeeeeccc----cCCCcEEEEEcCCCCcEEEEEcCC-------Cc
Q 009266 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK----HQGRAHKLAIEPGSPHVFYTCGED-------GL 174 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d-------g~ 174 (538)
.|..|+++|. +...|+++...+.|..+.-............. ....|.+|++.|..+..++++... +.
T Consensus 24 ~i~~i~~~p~-~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNET-EKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSS-STTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCC-CCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 7999999982 33556666655655444322222222110011 124588999998654444444321 12
Q ss_pred EEEEecCC-CCeeeeeeecccC--CCCCcceeeeeEEEEEcCCCCcEEEEEeCC
Q 009266 175 VQHFDLRT-GAATELFTCRPID--DRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (538)
Q Consensus 175 i~iwd~~~-~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 225 (538)
..||.... ++.-..+...... ..++ ...+..|+++|.+...|+++...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g---~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPG---RSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTT---TTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCc---ccccceEEECCCCCCEEEEeecc
Confidence 44554433 3322222211000 0000 01246789998766777777643
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=65.47 E-value=80 Score=28.67 Aligned_cols=155 Identities=13% Similarity=0.060 Sum_probs=84.7
Q ss_pred EcCCCCEEEEecCCCeEEEEECCC-------CceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec---ccC
Q 009266 69 FNTDGDILISGSDDRRVILWDWKT-------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI---LER 138 (538)
Q Consensus 69 ~s~~g~~l~t~~~d~~i~iw~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~---~~~ 138 (538)
+-|+..++++.+..|.|+--.+.. ++-+..+.......+..+.... ....|+..+..|.+.-+.. ...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~--t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN--THDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC--TTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec--CCCEEEEEeCCCeEEEEEHHHCcCC
Confidence 457788999999999999765421 1111222122344566655555 5666777777787665543 221
Q ss_pred ----ceeee---eeccccCCCcEEEEEcCC--CCcEEEEEcCCCcEEEEecCCCCe-----eeeeeecccCCCCCcceee
Q 009266 139 ----GGVET---KLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAA-----TELFTCRPIDDRRNYMTVV 204 (538)
Q Consensus 139 ----~~~~~---~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~ 204 (538)
...+. ..+. ....|.++...+. ...+|+.++..|.++...+..-.. +..+... ...
T Consensus 81 ~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~---------~~d 150 (370)
T 3l6v_A 81 GSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLD---------EGD 150 (370)
T ss_dssp CTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC---------TTC
T ss_pred CcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC---------CCC
Confidence 11111 0122 2345555544321 225788899999999988653221 1111111 111
Q ss_pred eeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 009266 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (538)
Q Consensus 205 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 236 (538)
.+..+..... ...|+..+..|.+..+....-
T Consensus 151 ~lv~v~~~~~-~~~i~l~T~~G~~irf~~~~v 181 (370)
T 3l6v_A 151 ALVGVALTDG-DRDVLLFASNGKTVRFGESTV 181 (370)
T ss_dssp CEEEEEEECS-CCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEEEeCC-CceEEEEeCCCeEEEEEcccc
Confidence 2333333332 456777888999888887654
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=63.74 E-value=80 Score=28.07 Aligned_cols=218 Identities=12% Similarity=0.073 Sum_probs=108.2
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEE---CCC------Cceeeeecc-CCCCCeEEEEEee-cCCCceEEEEeCCCcE
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWD---WKT------ERVKLSFHS-GHNDNVFQAKIMP-FTDDRSIVTCAADGQV 130 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~---~~~------~~~~~~~~~-~~~~~v~~l~~~~-~~~~~~l~s~~~dg~v 130 (538)
..+..+........|+..+..|.++... +.. |.++..++. .....|.++...+ +.+..+++.++..|.|
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 4455554444555666666667655443 332 333222221 1234555554332 2247799999999999
Q ss_pred EEeecccCce-----eeeeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecC--CCCeeee-eeecccCCCCCcce
Q 009266 131 RHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR--TGAATEL-FTCRPIDDRRNYMT 202 (538)
Q Consensus 131 ~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~-~~~~~~~~~~~~~~ 202 (538)
+...+..-.. +....+.. ...+..+...... ..|+..+..|.+..+.+. .-..... -.......+. .
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~---~ 196 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN---I 196 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC---T
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC---C
Confidence 9888754221 22222333 3344444444444 456677778888877765 2111100 0000000000 1
Q ss_pred eeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEE-cCCCCEEEEEcC
Q 009266 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF-SDQSELLVSYND 281 (538)
Q Consensus 203 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~ 281 (538)
...|.++...+. ...|+..+..|.++.-.+........... .. ....+... ...+..+.. .++..+++....
T Consensus 197 ~d~Vv~~~~~~~-~~~ll~~T~~G~~Krt~l~e~~~~~R~~~--G~---~~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 197 DDRLLSLNVVRE-GTYLLVATSGGYAKRTAIEEYPVQGRGGK--GV---LTVMYDRR-RGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp TCCEEEEEECCT-TCEEEEEETTSEEEEEEGGGSCBCCTTSC--CE---ESSCCCTT-TCSEEEEEEECTTCEEEEEEGG
T ss_pred CCEEEEEEEECC-CCEEEEEeCCCcEEEEEHHHccccCcCCC--cE---EEEEecCC-CCeEEEEEEeCCCccEEEEcCC
Confidence 224555555543 46888889999999888765543211000 00 01111111 223444333 344456666667
Q ss_pred CeEEEeeccC
Q 009266 282 EFIYLFTQDM 291 (538)
Q Consensus 282 ~~i~~~d~~~ 291 (538)
|.+..+....
T Consensus 270 G~~ir~~~~~ 279 (327)
T 3uc1_A 270 GGVIRTAARQ 279 (327)
T ss_dssp GCEEEEEGGG
T ss_pred CeEEEEehhh
Confidence 7777776653
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=61.18 E-value=90 Score=27.76 Aligned_cols=160 Identities=10% Similarity=0.042 Sum_probs=80.2
Q ss_pred CcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEE-cCCCCEEEEEcCCeEEEeeccCCCC
Q 009266 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF-SDQSELLVSYNDEFIYLFTQDMGLG 294 (538)
Q Consensus 216 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~~~i~~~d~~~~~~ 294 (538)
..+++..+..|.|+...+........ .......+.. ...+..+.. +....+++....|.++.+.......
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r-------~G~~~i~lke--~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~ei 179 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRS-------GGIVAVNLRD--NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 179 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCS-------SCEESCBCCT--TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTS
T ss_pred CCEEEEEcCCCEEEEeEHHHhhcccc-------CceEEEEECC--CCEEEEEEEecCCCEEEEEECCCeEEEEECccccc
Confidence 57899999999999988876542111 0000111111 233444433 4445566666688888887652000
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCCCcccCCceeeccccceeeeEEEEecCCCcEEEEeccCCeEEEeeccC
Q 009266 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (538)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~ 374 (538)
+ .... ...+.....+.... .|.++.. -+.+.+|+..+..|.++.-.+..
T Consensus 180 p-~~gr--------------------------~a~Gv~~i~L~~~d---~Vv~~~~-~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 180 R-PMGR--------------------------ATSGVQGMRFNIDD---RLLSLNV-VREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp C-CCCT--------------------------TSBCEESSCCCTTC---CEEEEEE-CCTTCEEEEEETTSEEEEEEGGG
T ss_pred C-cCCc--------------------------CCCCeeeecCCCCC---EEEEEEE-ECCCCEEEEEeCCCcEEEEEHHH
Confidence 0 0000 00011111222111 2666655 34566888999999998877643
Q ss_pred cce-------eEEee--cCcceeeEEeecCCCCeEEEeecCCceEEecCC
Q 009266 375 GEL-------IRVIE--ADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (538)
Q Consensus 375 ~~~-------~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~vw~~~ 415 (538)
... +..++ .-...+..+........|+..+..|.+..+.+.
T Consensus 229 ~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 229 YPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred ccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 222 22222 112234343333334455556666776666554
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.28 E-value=14 Score=36.77 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=29.7
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~~~~~~~ 99 (538)
..|.++.+. ..+|+|-+.|+++|+|++.+++++...
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 457766664 679999999999999999999987665
No 375
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.03 E-value=43 Score=32.44 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.5
Q ss_pred eeEEEEecCCCcEEEEecc------------CCeEEEeeccCcceeEEeecC-cceeeEEeecCCCCeEEEe
Q 009266 345 VKGVNFFGPKCEYVVSGSD------------CGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASS 403 (538)
Q Consensus 345 i~~v~~~s~~~~~l~~gs~------------dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~ 403 (538)
...|.| +++|.+.++... ...|+.++..++++...+.+. ...++.++|+|+++.|.++
T Consensus 478 PDnL~f-d~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGF-DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEE-CTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEE-CCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 567888 999987773211 226777777778876666544 3578999999999977765
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=58.08 E-value=33 Score=33.52 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=40.1
Q ss_pred cEEEEEEcCCCCEEEEecCC------------CeEEEEECCCCceeeeeccCCCCCeEEEEEeecCCCceEEEE
Q 009266 63 CVNTVSFNTDGDILISGSDD------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (538)
Q Consensus 63 ~v~~~~~s~~g~~l~t~~~d------------~~i~iw~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~ 124 (538)
..-.|+|+|.|.+++.-..+ ..+.+.+..+++..+-+.......++.++|+| +++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp--Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP--DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT--TSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC--CCCEEEEE
Confidence 45679999999877654321 34556666667654433233456899999999 88877654
No 377
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=58.01 E-value=98 Score=27.19 Aligned_cols=256 Identities=11% Similarity=0.084 Sum_probs=122.2
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
|+...+++.+.+|.|+--.+.+-+.... + -+-.....++.+ +.+..+........|+..+..|.+.-
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~-------~-----~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~ 67 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRR-------G-----GKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYS 67 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------------------CCEEEEEEEETTCEEEEEETTSEEEE
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhcc-------C-----CCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEE
Confidence 4556788899999998655542211100 0 000001122322 33334433444556666667787655
Q ss_pred EEC---C------CCceeeeecc-CCCCCeEEEEEee-cCCCceEEEEeCCCcEEEeecccC-----ceeeeeeccccCC
Q 009266 88 WDW---K------TERVKLSFHS-GHNDNVFQAKIMP-FTDDRSIVTCAADGQVRHAQILER-----GGVETKLLGKHQG 151 (538)
Q Consensus 88 w~~---~------~~~~~~~~~~-~~~~~v~~l~~~~-~~~~~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~~~~~ 151 (538)
+.. . .|.++..++. .....|.++...+ +.++.+++.++..|.++...+..- ..+....+..+ .
T Consensus 68 ~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d 146 (307)
T 1zi0_A 68 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-D 146 (307)
T ss_dssp EEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-C
T ss_pred EEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-C
Confidence 543 2 2232222221 2334565554321 125668999999999999876422 12222223334 4
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeee----eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCe
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 227 (538)
.+..+...... ..++..+..|.+..+....-.... -...... . ....|.++...++ ...|++.+..|.
T Consensus 147 ~lv~~~~~~~~-~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L---~---~~d~Vv~~~~~~~-~~~ll~~T~~G~ 218 (307)
T 1zi0_A 147 ELIGVDLTSGE-DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL---G---EGDKVVSLIVPRG-DGAILTATQNGY 218 (307)
T ss_dssp CEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC---C---TTCCEEEEECCCS-SCEEEEEETTSE
T ss_pred EEEEEEEeCCC-CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe---C---CCCEEEEEEEecC-CCEEEEEEcCCc
Confidence 55554444433 356677777887777764321110 0000000 0 1224555554443 456888899999
Q ss_pred EEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEE-cCCCCEEEEEcCCeEEEeeccC
Q 009266 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF-SDQSELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~~~i~~~d~~~ 291 (538)
++...+...........+ . ....+.. ....+..+.. .++..+++....|.+..+.+..
T Consensus 219 ~Kr~~~~e~~~~~Rg~kG--~---~~~~~~~-~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 219 GKRTAVAEYPTKSRATKG--V---ISIKVTE-RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEECGGGSCCCCTTSCC--E---ESSCCCT-TTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEEEEHHHhccCCCCCCC--E---EeeEecC-CCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 998887554322111000 0 0111111 1234444433 4455566666677776666654
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=56.62 E-value=1.2e+02 Score=27.62 Aligned_cols=254 Identities=11% Similarity=0.101 Sum_probs=127.2
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
|+...+++.+.+|.||=-.+..-+..++ ++. + .....++ ....+..+........|+..+..|.+.-
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r-------~g~-g----~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~ 71 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRR-------GGR-G----RSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFW 71 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCC-------CCC-C----SEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhcc-------CCC-C----ceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEE
Confidence 4566899999999998655432111000 000 0 0012233 3455665655555666776777787665
Q ss_pred EEC---C------CCceeeeecc-CCCCCeEEEEEee-cCCCceEEEEeCCCcEEEeecccCc-----eeeeeeccccCC
Q 009266 88 WDW---K------TERVKLSFHS-GHNDNVFQAKIMP-FTDDRSIVTCAADGQVRHAQILERG-----GVETKLLGKHQG 151 (538)
Q Consensus 88 w~~---~------~~~~~~~~~~-~~~~~v~~l~~~~-~~~~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~~~~~ 151 (538)
+.. . .|..+..++. .....|.++...+ +..+.+|+.++..|.++...+..-. .+....+.. ..
T Consensus 72 ~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d 150 (370)
T 3l6v_A 72 LPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GD 150 (370)
T ss_dssp EEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TC
T ss_pred EEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CC
Confidence 543 2 2333222211 2234565554432 1245689999999999988765322 122222332 34
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe-------eeeeeecccCCCCCcceeeeeEEEEEcCC----------
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-------TELFTCRPIDDRRNYMTVVNLNAIAIDPR---------- 214 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------- 214 (538)
.+..+...... ..|+..+..|.+..+....-.. +..+... ....|.++...+.
T Consensus 151 ~lv~v~~~~~~-~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~---------~~d~Vv~~~~~~~~~~~~~~~~~ 220 (370)
T 3l6v_A 151 ALVGVALTDGD-RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA---------KGEEVVSLIVSERAGGVEDEVED 220 (370)
T ss_dssp CEEEEEEECSC-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC---------TTCCEEEEEEECCC---------
T ss_pred EEEEEEEeCCC-ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC---------CCCEEEEEEEecccccccccccc
Confidence 44444444433 3566677778877776542111 1111111 1112333333220
Q ss_pred ------------------------CCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEE-EE
Q 009266 215 ------------------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL-AF 269 (538)
Q Consensus 215 ------------------------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~ 269 (538)
....|++.+..|..+...+...+....-..+ + .+. .+.. ....+..+ ..
T Consensus 221 ~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kG--v--~~~-k~~~-~~g~lv~~~~v 294 (370)
T 3l6v_A 221 ESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQG--V--IGI-QTTE-RNGKLVRAVLL 294 (370)
T ss_dssp --------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCC--E--ESS-CCCT-TTCSEEEEEEE
T ss_pred ccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcc--e--EEE-EecC-CCCcEEEEEEe
Confidence 2457888999999999988765543221111 0 011 1111 12334443 34
Q ss_pred cCCCCEEEEEcCCeEEEeeccC
Q 009266 270 SDQSELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 270 s~~~~~l~~~~~~~i~~~d~~~ 291 (538)
.++..+++....|.+....+..
T Consensus 295 ~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 295 GSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp CTTCEEEEEETTCCEEEEEGGG
T ss_pred CCCceEEEEcCCCeEEEeeHhh
Confidence 4455666666677666666543
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=54.01 E-value=57 Score=31.63 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=41.8
Q ss_pred CcEEEEEEcCCCCEEE-EecC-----------CCeEEEEECCCCceeeeeccC-CCCCeEEEEEeecCCCceEEEEe
Q 009266 62 GCVNTVSFNTDGDILI-SGSD-----------DRRVILWDWKTERVKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCA 125 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~-t~~~-----------d~~i~iw~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~l~s~~ 125 (538)
.....|.|.++|.+.+ |=.. ...|..++..+++... ++.+ ....++.++|+| +++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~-fl~~P~~aEpnGiafSP--D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-FMVGPIGCEVTGISFSP--DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE-EEECCTTCEEEEEEECT--TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE-EEeCCCCccccCCEECC--CCCEEEEEE
Confidence 4567899999998777 4221 1256666766777543 4343 345789999999 998887764
No 380
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=53.27 E-value=1.2e+02 Score=26.67 Aligned_cols=161 Identities=10% Similarity=0.076 Sum_probs=72.6
Q ss_pred CCceEEEEeCCCcEEEeecccCceee-------eeeccccCCCcEEEEEcCCCCcEEEEEcCCCcEEEEec---CCCCee
Q 009266 117 DDRSIVTCAADGQVRHAQILERGGVE-------TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL---RTGAAT 186 (538)
Q Consensus 117 ~~~~l~s~~~dg~v~vwd~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~---~~~~~~ 186 (538)
+..++++.+.+|.|+--.+..-.... ...+... ..+..+...... ..|+..+..|.++-+.. +.....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~-~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTH-DHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCC-CEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 56678899999999876654322111 1112222 233333333333 34555566677555543 222110
Q ss_pred e-eeeecccCCCCCcceeeeeEEEEEcC--CCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccc
Q 009266 187 E-LFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (538)
Q Consensus 187 ~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (538)
. -........+. ....|.++...+ ....+++..+..|.++...+........ .......+.. . ..
T Consensus 80 a~G~~i~~~l~l~---~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r-------~G~~~i~l~~-~-d~ 147 (307)
T 1zi0_A 80 ARGRPIVNLLPLE---QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT-------AGKVAIKLVD-G-DE 147 (307)
T ss_dssp SCCEEGGGTSCCC---TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT-------TCEESSCCCT-T-CC
T ss_pred CCCeEhhhccCCC---CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc-------CCeEEEEECC-C-CE
Confidence 0 00000000000 111344443211 1245788899999999988765432111 0001111111 2 34
Q ss_pred eEEEEE-cCCCCEEEEEcCCeEEEeeccC
Q 009266 264 ITGLAF-SDQSELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 264 i~~~~~-s~~~~~l~~~~~~~i~~~d~~~ 291 (538)
+..+.. ..+..+++....|.+..+....
T Consensus 148 lv~~~~~~~~~~i~l~T~~G~~irf~~~~ 176 (307)
T 1zi0_A 148 LIGVDLTSGEDEVMLFSAEGKVVRFKESS 176 (307)
T ss_dssp EEEEEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEEeCCCCEEEEECCCCcEEEEEHHH
Confidence 444444 4445566666788887777654
No 381
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=47.91 E-value=1.7e+02 Score=26.89 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=97.2
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCC-Cc---------ee-eeeccCCCCCeEEEEEeecCCCceEEEEeCC-Cc
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKT-ER---------VK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQ 129 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~-~~---------~~-~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~d-g~ 129 (538)
..|..|+.-. .+.+.-..+|.|..|=... ++ .. ..+.......|..|+.. ..+.+....+ +.
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G----~~ht~al~~~gg~ 89 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG----ADHTVAYSQSGME 89 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC----SSEEEEEETTTTE
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC----cceEEEEECCCCE
Confidence 4566666543 3344445578888885432 11 11 11111122356666653 3344444444 58
Q ss_pred EEEeecccCce---------eeeeeccc-cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeee------eeeecc
Q 009266 130 VRHAQILERGG---------VETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE------LFTCRP 193 (538)
Q Consensus 130 v~vwd~~~~~~---------~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~ 193 (538)
|..|-...... .....+.. ....|..|+... ...+....+|.|+.|-......+. ......
T Consensus 90 v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~---~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred EEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh---hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceE
Confidence 99996432211 11111111 223567776654 344555678999999754321110 111100
Q ss_pred cCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCC
Q 009266 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (538)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 273 (538)
.... ....|..++... .+.++-..+|.|+.|-....-.+.. +.......+..........|..++....
T Consensus 167 v~~~----~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqlG~---g~~~~~~~p~~v~~~~~~~i~~va~G~~- 235 (406)
T 4d9s_A 167 IQAF----EGIRIKMVAAGA---EHTAAVTEDGDLYGWGWGRYGNLGL---GDRTDRLVPERVTSTGGEKMSMVACGWR- 235 (406)
T ss_dssp CGGG----TTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCS---SSSCCEEEEEECCCSTTCCEEEEEECSS-
T ss_pred eccc----CCCcEEEEecCC---CeEEEEeCCCCEEEeeCCCCCCCCC---CCCCCcCccEEecccCCceEEEEEECCC-
Confidence 0000 111456665543 4566667899999997654322211 1111111111111111234555554322
Q ss_pred CEEEEEcCCeEEEeeccC
Q 009266 274 ELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 274 ~~l~~~~~~~i~~~d~~~ 291 (538)
..++...++.|+.|-...
T Consensus 236 ht~~l~~~G~v~~wG~n~ 253 (406)
T 4d9s_A 236 HTISVSYSGALYTYGWSK 253 (406)
T ss_dssp EEEEEETTCCEEEEECCT
T ss_pred cEEEEcCCCCEEEeeCCC
Confidence 234455577888887543
No 382
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=47.61 E-value=1.5e+02 Score=26.24 Aligned_cols=253 Identities=9% Similarity=0.049 Sum_probs=124.8
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
|+...+++.+.+|.|+--.+..-+.... ....++.+ +.+..+........|+..+..|.+.-
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~-----------------~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~ 64 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNG-----------------QDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLY 64 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTT-----------------CCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCc-----------------cccccCCC-CEEEEEEEECCCCEEEEEECCCEEEE
Confidence 4567788999999998655431110000 01123333 33444444444556666677787655
Q ss_pred EEC---C------CCceeeeecc-CCCCCeEEEEEee-cCCCceEEEEeCCCcEEEeecccC------ceeeeeeccccC
Q 009266 88 WDW---K------TERVKLSFHS-GHNDNVFQAKIMP-FTDDRSIVTCAADGQVRHAQILER------GGVETKLLGKHQ 150 (538)
Q Consensus 88 w~~---~------~~~~~~~~~~-~~~~~v~~l~~~~-~~~~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~~~~~ 150 (538)
+.. . .|.++..++. .....|.++...+ +.++.+|+.++..|.++...+..- ..+....+...
T Consensus 65 ~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~- 143 (323)
T 1wp5_A 65 CPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND- 143 (323)
T ss_dssp EEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-
T ss_pred EEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-
Confidence 543 2 2332222221 1233455543333 112668999999999999887522 12222223322
Q ss_pred CCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeee----eeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCC
Q 009266 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (538)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 226 (538)
..+..+...... ..++..+..|.+..+....-.... -...... . ....|.++...+.+...|++.+..|
T Consensus 144 d~lv~~~~~~~~-~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L---~---~~d~Vv~~~~~~~~~~~ll~vt~~G 216 (323)
T 1wp5_A 144 DQVVDVHLTDGM-NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL---K---EGDYIVSGQLITSKDESIVVATQRG 216 (323)
T ss_dssp CCEEEEEEECSC-SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC---C---TTCCEEEEEEECCTTCEEEEEETTS
T ss_pred CEEEEEEEeCCC-CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe---C---CCCEEEEEEEEcCCCcEEEEEECCC
Confidence 445554444433 356777788888888764321110 0111110 0 1123455544333232678888999
Q ss_pred eEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceE-EEEEcCCCCEEEEEcCCeEEEeeccC
Q 009266 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT-GLAFSDQSELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 227 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (538)
..+...+........-.-+ ...+..+ ......+. .+.+.++..+++....|.+..+.+..
T Consensus 217 ~gKr~~~~e~~~~~Rg~kG----v~~~~~~-~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 217 AVKKMKLTEFEKATRAKRG----VVILREL-KANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEEEGGGSCCCCTTSCC----EECSCCC-SSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ceEEEEHHHccccCCCCCC----EECeeec-CCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 9888877654322111100 0111111 11122344 34445555566666777776666654
No 383
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=46.77 E-value=2.5e+02 Score=28.55 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred cCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeecc-C----------CCCCeEEEEEeecCCCceEEEEeC--
Q 009266 61 RGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHS-G----------HNDNVFQAKIMPFTDDRSIVTCAA-- 126 (538)
Q Consensus 61 ~~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~~~~~~~~~-~----------~~~~v~~l~~~~~~~~~~l~s~~~-- 126 (538)
.+.|.+|+++|.. ..+..+...|.|.... ..|+.-..+.. . ....|.+|++.|...+.+++.++.
T Consensus 20 ~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~ 98 (763)
T 3a0f_A 20 GGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYV 98 (763)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCT
T ss_pred CCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccc
Q ss_pred --CCcEEEeecccCceeeeeeccccCCCcE--------EEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecccCC
Q 009266 127 --DGQVRHAQILERGGVETKLLGKHQGRAH--------KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (538)
Q Consensus 127 --dg~v~vwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (538)
.....||.-..+................ .|+++|..+..++++...+.|..=.=....-...........
T Consensus 99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~S~DgG~TW~~~~~~~~~~~ 178 (763)
T 3a0f_A 99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSST 178 (763)
T ss_dssp TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEEESSTTSSCEECTTSCCCSC
T ss_pred cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEEECCCCcCccccccCcccCC
Q ss_pred CCCcceeeeeEEEEEcCCCCcEEEEEeCCC-eEEE
Q 009266 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRL 230 (538)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~i 230 (538)
... .+..|+++|.+...++++...+ .|..
T Consensus 179 ~~~-----~~~~i~~~p~~~~~~~~~~~~~g~v~~ 208 (763)
T 3a0f_A 179 YGI-----GIISVIFDPKNVGTAYVASHAVGGLWV 208 (763)
T ss_dssp TTT-----CEEEEEECSSSTTCEEEEESSTTCEEE
T ss_pred Ccc-----ceEEEEECCCCCCEEEEEEeCCCeEEE
No 384
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=44.94 E-value=4.6 Score=40.04 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=7.1
Q ss_pred eEEeeeccCceecc
Q 009266 22 VDVWLRELGQLSTR 35 (538)
Q Consensus 22 v~iwd~~~g~~~~~ 35 (538)
|.+|+.+|..+..+
T Consensus 190 ~NLWNp~T~~LseK 203 (956)
T 4aco_A 190 LNLWNPETNHLSEK 203 (956)
T ss_dssp HHHHCSCCTTTCTT
T ss_pred eeccCCCCcchhhH
Confidence 44555555544443
No 385
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=42.65 E-value=2.4e+02 Score=27.25 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=33.8
Q ss_pred EecCCC-cEEEEeccCCeEEEeeccCcceeEEeecC---------cceeeEEeecCCCC--eEEEeecCCceEEecCCCC
Q 009266 350 FFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIEAD---------RHVVNCIEPHPHST--VLASSGIESDIKILTPNAA 417 (538)
Q Consensus 350 ~~s~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~h---------~~~v~~~~~s~~~~--~l~s~~~dg~v~vw~~~~~ 417 (538)
||.-+. +.|+-+ +.|.-|+...++....+... ..+..+..+--+.+ +|.-......|+||.....
T Consensus 457 ~WdGDl~relld~---~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~p 533 (591)
T 2zux_A 457 WWDGDLLREQLDS---NRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIP 533 (591)
T ss_dssp CCSSSSSCEEEET---TEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCC
T ss_pred EECCCCcHhhhCC---ceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCC
Confidence 336665 344433 36888887766533333221 12233334444444 3443444567999987544
No 386
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=40.15 E-value=2.2e+02 Score=26.06 Aligned_cols=211 Identities=14% Similarity=0.120 Sum_probs=99.2
Q ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCC-c---------ee-eeeccCCCCCeEEEEEeecCCCceEEEEeCCCcE
Q 009266 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTE-R---------VK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (538)
Q Consensus 62 ~~v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~-~---------~~-~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v 130 (538)
..|..|+..... .+|.....+.|..|-.... + .. ..+.......|..|+. ...+.+....+|.|
T Consensus 68 ~~i~~va~G~~h-t~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~----G~~h~~alt~~G~v 142 (406)
T 4d9s_A 68 HQIVSVTCGADH-TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC----GDSHCLAVTMEGEV 142 (406)
T ss_dssp SCEEEEEECSSE-EEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE----CSSEEEEEETTSCE
T ss_pred CCEEEEEeCcce-EEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE----ChhheEEEcCCCcE
Confidence 357777765332 2333333358998854321 1 01 1111112235666655 44566667788999
Q ss_pred EEeecccCcee---------eeeeccc-cCCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCee------eeeeeccc
Q 009266 131 RHAQILERGGV---------ETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT------ELFTCRPI 194 (538)
Q Consensus 131 ~vwd~~~~~~~---------~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~ 194 (538)
..|-......+ ....+.. ....|..++... ...++...+|.|+.|-......+ ........
T Consensus 143 ~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v 219 (406)
T 4d9s_A 143 QSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA---EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 219 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEEC
T ss_pred EEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC---CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEe
Confidence 99975432111 1111111 122566666554 33455567899999965432111 11111000
Q ss_pred CCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC
Q 009266 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (538)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (538)
... ....|..++... .+.++-..+|.|+.|-....-.+..... .....|..+.......|..++... ..
T Consensus 220 ~~~----~~~~i~~va~G~---~ht~~l~~~G~v~~wG~n~~GqlG~g~~---~~~~~p~~v~~~~~~~v~~i~~G~-~h 288 (406)
T 4d9s_A 220 TST----GGEKMSMVACGW---RHTISVSYSGALYTYGWSKYGQLGHGDL---EDHLIPHKLEALSNSFISQISGGW-RH 288 (406)
T ss_dssp CCS----TTCCEEEEEECS---SEEEEEETTCCEEEEECCTTSTTCSSSC---CCEEEEEECGGGTTSCEEEEEECS-SE
T ss_pred ccc----CCceEEEEEECC---CcEEEEcCCCCEEEeeCCCCCCCCCCCC---cCccccEEecccCCCCEEEEEecC-CE
Confidence 000 112455555543 4555567899999998655432221110 001111111111123455555432 23
Q ss_pred EEEEEcCCeEEEeeccC
Q 009266 275 LLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 275 ~l~~~~~~~i~~~d~~~ 291 (538)
.++...++.|+.|-...
T Consensus 289 s~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 289 TMALTSDGKLYGWGWNK 305 (406)
T ss_dssp EEEEETTSCEEEEECCT
T ss_pred EEEEcCCCeEEEeeCCC
Confidence 44555677899987554
No 387
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=37.44 E-value=2.4e+02 Score=25.63 Aligned_cols=212 Identities=8% Similarity=0.027 Sum_probs=99.9
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCC-c---------eeeeecc-CCCCCeEEEEEeecCCCceEEEEeCCCcEEE
Q 009266 64 VNTVSFNTDGDILISGSDDRRVILWDWKTE-R---------VKLSFHS-GHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (538)
Q Consensus 64 v~~~~~s~~g~~l~t~~~d~~i~iw~~~~~-~---------~~~~~~~-~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~v 132 (538)
|..|+.. ....+.-..+|.|..|-.... + ....... .....+..++++. ...+.+....+|.|..
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~--G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS--GGKHCLALSSEGEVYS 130 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT--TCSEEEEEETTSCEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc--CCCeEEEEcCCCCEEE
Confidence 4444432 334444456777888853321 1 1111111 1223455566665 6667777788999999
Q ss_pred eecccCce---------eeeeecccc-CCCcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe------eeeeeecccCC
Q 009266 133 AQILERGG---------VETKLLGKH-QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA------TELFTCRPIDD 196 (538)
Q Consensus 133 wd~~~~~~---------~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~ 196 (538)
|-...... .....+... ...|..|+... ...++...+|.|+.|-...... ...........
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~ 207 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA 207 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc
Confidence 96543111 111111111 22566666554 3345556789999996532111 01111100000
Q ss_pred CCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCCEE
Q 009266 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (538)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 276 (538)
. ....|..++.... ..+.++-..+|.|+.|-....-.+.... ......|..+.......|..++.... ..+
T Consensus 208 ~----~~~~v~~ia~G~g-~~~t~~l~~~G~v~~wG~n~~GqLG~g~---~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~ 278 (389)
T 3kci_A 208 L----QGHRVVDIACGSG-DAQTLCLTDDDTVWSWGDGDYGKLGRGG---SDGCKVPMKIDSLTGLGVVKVECGSQ-FSV 278 (389)
T ss_dssp G----TTSCEEEEEECCS-SCEEEEEETTTEEEEEECCGGGTTSSSS---CCCEEEEEECGGGTTSCEEEEEEETT-EEE
T ss_pred c----CCCeEEEEEEcCC-CcEEEEEccCCEEEEEeCCCCCCCCCCC---CCCccccEEecccCCCcEEEEeCCCC-EEE
Confidence 0 1124556655431 2456666789999999765433222110 00001111111111224555555432 234
Q ss_pred EEEcCCeEEEeeccC
Q 009266 277 VSYNDEFIYLFTQDM 291 (538)
Q Consensus 277 ~~~~~~~i~~~d~~~ 291 (538)
+...++.|+.|-...
T Consensus 279 alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 279 ALTKSGAVYTWGKGD 293 (389)
T ss_dssp EEETTSCEEEEECCG
T ss_pred EEeCCCeEEEEeCCC
Confidence 455677888887543
No 388
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=35.73 E-value=2.8e+02 Score=25.95 Aligned_cols=192 Identities=10% Similarity=0.093 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEecCCCCeeeeeeecc-cCCCCCcceeeeeEEEEEcCC--------CCcEEEEEeC
Q 009266 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP-IDDRRNYMTVVNLNAIAIDPR--------NANLFAVAGS 224 (538)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~--------~~~~l~~~~~ 224 (538)
....+...| .-++.... .+.||............+.. ........+...+.++.+.+. ..-+|++..
T Consensus 41 ~sg~i~~~G-yAlvv~~~--~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsp- 116 (450)
T 1xks_A 41 LTINIDEGG-WACLVCKE--KLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATR- 116 (450)
T ss_dssp EEEEECTTS-EEEEEETT--EEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEEECT-
T ss_pred eEEEECCCc-EEEEEeCC--eEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEEEcC-
Q ss_pred CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCc-cceEEEEEcCCCCEEEEEcCCeEEEeeccCCCCCCCCCCCCc
Q 009266 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ-VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPV 303 (538)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~ 303 (538)
.|.|+.|.--....... .....-.. ..++.+.-..-.-+|++.+.+++....++ +++......-..
T Consensus 117 tG~VryWesIs~~~~~~------------ei~~~L~~~E~vt~l~n~epaGfIlaTStgrl~~lsir-Gkp~l~~~~l~~ 183 (450)
T 1xks_A 117 EGSIRYWPSLAGEDTYT------------EAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPE-SSGKIHQHILPQ 183 (450)
T ss_dssp TCEEEEESCTTCTTCCE------------EEECC----CCEEEEEEETTTEEEEEETTCCEEEEEEC-TTSCEEEEECTT
T ss_pred CccEEEccccCCCCceE------------EEEecCCCCceEEEEeecCCceEEEEeccceEEEEEec-CCceEEEEEecC
Q ss_pred cccccccccCCCCccccCCCCCCCCcccCCceeeccc---cceeeeEEEEecCCCcEEEEeccCCeEEEeeccCcceeEE
Q 009266 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR---NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV 380 (538)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~~~~~~ 380 (538)
.......- ++....+.|.. ......++.. ...++.|++.+..+ +.+|++.++.....
T Consensus 184 ~~G~l~gi------------------~~~~sSl~G~~s~~~~ia~v~~~~-~~g~r~v~ilT~~~-lq~W~l~~~~e~~~ 243 (450)
T 1xks_A 184 GQGMLSGI------------------GRKVSSLFGILSPSSDLTLSSVLW-DRERSSFYSLTSSN-ISKWELDDSSEKHA 243 (450)
T ss_dssp CCCC------------------------------------CCCCEEEEEE-ETTTTEEEEEESSE-EEEEEECSSCEEEE
T ss_pred CCcccccc------------------cccccccccccCCCcceEEEEecc-CCCcEEEEEEcCCc-eEEEEecCCCceEE
Q ss_pred ee
Q 009266 381 IE 382 (538)
Q Consensus 381 ~~ 382 (538)
+.
T Consensus 244 ~~ 245 (450)
T 1xks_A 244 YS 245 (450)
T ss_dssp EE
T ss_pred Ee
No 389
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=35.40 E-value=7.9 Score=38.44 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=2.6
Q ss_pred EEECCC
Q 009266 87 LWDWKT 92 (538)
Q Consensus 87 iw~~~~ 92 (538)
+|+..|
T Consensus 192 LWNp~T 197 (956)
T 4aco_A 192 LWNPET 197 (956)
T ss_dssp HHCSCC
T ss_pred ccCCCC
Confidence 444443
No 390
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=33.20 E-value=2.5e+02 Score=24.62 Aligned_cols=253 Identities=11% Similarity=0.059 Sum_probs=125.8
Q ss_pred CCCceEEeeccCCceEEeeeccCceeccccchhhcccccceEEeeeeeEEcCCcCcEEEEEEcCCCCEEEEecCCCeEEE
Q 009266 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (538)
Q Consensus 8 ~~~~~l~t~~~d~~v~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~t~~~d~~i~i 87 (538)
++...+++.+.+|.|+--.+..-+..... ..+.. ...++.. ..+..+........|+..+..|.++-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~--------~~g~~----~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~ 72 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTG--------GKGLS----SFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYL 72 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSS--------CCCEE----CCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccC--------CCCce----ecccCCC-CEEEEEEEECCCCEEEEEECCCeEEE
Confidence 35567889999999987665432211000 00000 1122333 33444444444556777777888776
Q ss_pred EECCC---------Cceeeeecc-CCCCCeEEEEEee-cCCCceEEEEeCCCcEEEeecccC-----ceeeeeeccccCC
Q 009266 88 WDWKT---------ERVKLSFHS-GHNDNVFQAKIMP-FTDDRSIVTCAADGQVRHAQILER-----GGVETKLLGKHQG 151 (538)
Q Consensus 88 w~~~~---------~~~~~~~~~-~~~~~v~~l~~~~-~~~~~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~~~~~ 151 (538)
+.... |..+...+. .....|.++...+ +....+|+..+..|.++...+..- ..+....+.. ..
T Consensus 73 ~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d 151 (312)
T 1suu_A 73 INAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KD 151 (312)
T ss_dssp EEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TC
T ss_pred EEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CC
Confidence 65421 121111111 1223455443332 113567888999999998877432 1122222333 44
Q ss_pred CcEEEEEcCCCCcEEEEEcCCCcEEEEecCCCCe-------eeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeC
Q 009266 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (538)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 224 (538)
.+..+...... ..++..+..|.+..+.+..-.. +..+... ....|.++...+. +..+++.+.
T Consensus 152 ~lv~~~~~~~~-~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~---------~~d~vv~~~~v~~-~~~l~~vt~ 220 (312)
T 1suu_A 152 FVTSAEIVFKD-EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK---------EGDLFVKVLSVKE-NPYLLIVSE 220 (312)
T ss_dssp CEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC---------TTCCEEEEEECTT-CSEEEEEET
T ss_pred EEEEEEEeCCC-CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC---------CCCEEEEEEEECC-CCeEEEEEC
Confidence 55555554434 4577788889988887653111 1111111 1123455544443 456788899
Q ss_pred CCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceE-EEEEcCCCCEEEEEcCCeEEEeecc
Q 009266 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT-GLAFSDQSELLVSYNDEFIYLFTQD 290 (538)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (538)
.|.++...+..........-+. ............+. ...+.++..+++....+.+....+.
T Consensus 221 ~G~~kr~~~~e~~~~~R~~kGv-----~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~ 282 (312)
T 1suu_A 221 NGYGKRLNMSKISELKRGATGY-----TSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 282 (312)
T ss_dssp TSEEEEEEGGGSCBCCTTCCCE-----ECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred CCceEEEEHHHhcccCCCCCCE-----EeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcc
Confidence 9999999887654322211111 11111111123343 3355555566666667755444443
No 391
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=32.56 E-value=2.4e+02 Score=24.20 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=57.7
Q ss_pred CeEEEEEeecCCCceEEEEeCCCcEEE---eecccCceeeeeeccccCCCcEEEEEcC--CCCcEEEEEcCCCcEEEEec
Q 009266 106 NVFQAKIMPFTDDRSIVTCAADGQVRH---AQILERGGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDL 180 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~s~~~dg~v~v---wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~ 180 (538)
.+..+.... ...+|+.-+..|.++- |++....... . +. ....|..+.. + +. ..++..+..|.|+...+
T Consensus 25 ~~~~~~~~~--t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~-~~e~i~~v~~-~~~~~-~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 25 PVVNILRVP--FTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KS-REEKIVGAFI-REKFG-NRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CEEEEEEEE--TTSCEEEEETTSEEEEECSHHHHTSEECC-C-SS-TTCCEEEEEE-GGGSC-SEEEEEETTSEEEEEEG
T ss_pred eEEEEEEEC--CCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CC-CCCEEEEEEC-CcCCC-CEEEEEeCCCEEEEEEH
Confidence 444444444 4455666666666554 3333221111 1 22 3445555544 3 33 57888999999999887
Q ss_pred CCCC----eeeeeeecccCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 009266 181 RTGA----ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (538)
Q Consensus 181 ~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 235 (538)
..-. -...+... ....+..+..... ...|+..+..|.+..+....
T Consensus 98 ~~~~~~~~G~~~i~lk---------egD~l~~~~~~~~-~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 98 AEFEYKAQGMPIIKLT---------EGDEVVSIASSVD-ETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp GGTTTCSTTEECSCCC---------TTCCEEEEEECCS-SCEEEEEETTSEEEEEEGGG
T ss_pred HHhhhhcCCeEEEecC---------CCCEEEEEEEeCC-CCEEEEEECCCEEEEEEhhh
Confidence 5432 00011111 1113333433333 34667777788877776654
No 392
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=29.26 E-value=3e+02 Score=24.30 Aligned_cols=199 Identities=11% Similarity=0.098 Sum_probs=101.7
Q ss_pred CCCCEEEEecCCCeEEEEECCCC----ceeeeeccCCCCCeEEEEEeecCCCceEEEEeCCCcEEEeec---ccCc----
Q 009266 71 TDGDILISGSDDRRVILWDWKTE----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI---LERG---- 139 (538)
Q Consensus 71 ~~g~~l~t~~~d~~i~iw~~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~---~~~~---- 139 (538)
|+..++++.+..|.|+--.+..- .....+ .. ...+..+.... ....|+..+..|.+.-+.. ....
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~l-ke-~D~l~~~~~~~--t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~ 78 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM-KD-TDRLLAMLEMN--TKDVLLLFTNKGNYLYCPVHELPDIRWKDL 78 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC-CT-TCCEEEEEEEE--TTSEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcccccc-CC-CCEEEEEEEEC--CCCEEEEEECCCEEEEEEHHHCcCCCCCCC
Confidence 56678889999999987754311 111112 22 23444544554 5667777777787665544 2211
Q ss_pred eeee---eeccccCCCcEEEEEcCC--CCcEEEEEcCCCcEEEEecCCCCe------eeeeeecccCCCCCcceeeeeEE
Q 009266 140 GVET---KLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAA------TELFTCRPIDDRRNYMTVVNLNA 208 (538)
Q Consensus 140 ~~~~---~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~ 208 (538)
..+. ..+. ....|..+...++ ...+|+.++..|.++...+..-.. +..+.... . ..+..
T Consensus 79 G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e--------~-d~lv~ 148 (323)
T 1wp5_A 79 GQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN--------D-DQVVD 148 (323)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT--------T-CCEEE
T ss_pred CcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC--------C-CEEEE
Confidence 1110 0111 2234555433332 124678889999999988753221 11111111 1 23334
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCCCcccCCCCccCCCccceEEEEEcCCCC--EEEEEcCCeEEE
Q 009266 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE--LLVSYNDEFIYL 286 (538)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~~~i~~ 286 (538)
+..... ...|+..+..|.+..+....-...+... ..+. ...+. ....|.++...+.+. +++....|..+.
T Consensus 149 ~~~~~~-~~~i~l~T~~G~~irf~~~ev~~~gR~a--~GV~---~i~L~--~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr 220 (323)
T 1wp5_A 149 VHLTDG-MNELFLVTHNGYALWFDESEVSIVGVRA--AGVK---GMNLK--EGDYIVSGQLITSKDESIVVATQRGAVKK 220 (323)
T ss_dssp EEEECS-CSEEEEEETTSEEEEEEGGGSCBCCSSC--CCEE---CCCCC--TTCCEEEEEEECCTTCEEEEEETTSEEEE
T ss_pred EEEeCC-CCEEEEEeCCCcEEEEEHHHCcccCCCC--cCEE---EEEeC--CCCEEEEEEEEcCCCcEEEEEECCCceEE
Confidence 433332 4567788899999888887643322211 1111 11111 234566665444443 555555677666
Q ss_pred eeccC
Q 009266 287 FTQDM 291 (538)
Q Consensus 287 ~d~~~ 291 (538)
..+..
T Consensus 221 ~~~~e 225 (323)
T 1wp5_A 221 MKLTE 225 (323)
T ss_dssp EEGGG
T ss_pred EEHHH
Confidence 66543
No 393
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=26.95 E-value=2.2e+02 Score=27.45 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=41.3
Q ss_pred CeEEEEEeecCCCceEEEEeCCCcEEEeecccCc----eeeeeeccccCCCcE-EEEEcCCCCcEEEEEcCCCcEEE
Q 009266 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG----GVETKLLGKHQGRAH-KLAIEPGSPHVFYTCGEDGLVQH 177 (538)
Q Consensus 106 ~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~i 177 (538)
.+++|+.....+-..++.|+.+|.|.-..+.... ......+.....+|. .|.+++.. ..|++++..+.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~-~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQ-LYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTS-SEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCC-CeEEEEecccccee
Confidence 3555665552234457778888887665554321 122222333346775 89999977 57777776654444
No 394
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=24.50 E-value=4.4e+02 Score=24.67 Aligned_cols=176 Identities=14% Similarity=0.032 Sum_probs=81.7
Q ss_pred CCeEEEEEeecCCCceEEEEeCCCcEEEeeccc---Cc----------eeeeeecccc-CCCcEEEEEcCCCCcEEEEEc
Q 009266 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE---RG----------GVETKLLGKH-QGRAHKLAIEPGSPHVFYTCG 170 (538)
Q Consensus 105 ~~v~~l~~~~~~~~~~l~s~~~dg~v~vwd~~~---~~----------~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~ 170 (538)
..|..|+. ...+.+....+|.|..|-... +. ......+... ...|..|+... ...++..
T Consensus 148 ~~i~~va~----G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~---~hs~alt 220 (473)
T 3of7_A 148 HKVVQLAA----TDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK---DHILFLD 220 (473)
T ss_dssp CCEEEEEE----CSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS---SEEEEEE
T ss_pred CcEEEEEc----cCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC---CeEEEEe
Confidence 35555555 345666667789999997521 00 0000111111 22466776654 3445556
Q ss_pred CCCcEEEEecCCCCeeeeeeecc---cCCCCCcceeeeeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCccccCCCCCCCC
Q 009266 171 EDGLVQHFDLRTGAATELFTCRP---IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (538)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 247 (538)
.+|.|+.|-......+..-.... ....+.......|..|+.- ....++-..+|.|+.|-....-.+........
T Consensus 221 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G---~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~ 297 (473)
T 3of7_A 221 EEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG---ENHCFALTKDNKLVSWGLNQFGQCGVSEDVED 297 (473)
T ss_dssp TTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC---SSEEEEEETTSCEEEEEECTTSTTCCCSCCCT
T ss_pred CCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC---CCeEEEEecCCCEEEeCCCCCCCcCCCCcccC
Confidence 78999999654322111100000 0000000011246666654 34556667899999998765332221110000
Q ss_pred -CcccCCCCccCCCccceEEEEEcCCCCEEEEEcCCeEEEeeccC
Q 009266 248 -ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (538)
Q Consensus 248 -~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (538)
.....|..+.......|..++.... ..++...++.|+.|-...
T Consensus 298 ~~~~~~P~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~v~~wG~n~ 341 (473)
T 3of7_A 298 GALVTKPKRLALPDNVVIRSIAAGEH-HSLILSQDGDLYSCGRLD 341 (473)
T ss_dssp TCEEEEEEECCCCTTCCEEEEEECSS-EEEEEETTSCEEEEEECT
T ss_pred CceeeccccccccCCccEEEEEeCCC-eEEEEeCCCeEEEEECCC
Confidence 0000111111111235666655432 234445677888887644
No 395
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.77 E-value=1.8e+02 Score=27.63 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=36.1
Q ss_pred EEEEeccCCeEEEeec-cCc-------ceeEEeec--CcceeeEEeecCCCCeEEEeecCCceEE
Q 009266 357 YVVSGSDCGRIFIWKK-KGG-------ELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKI 411 (538)
Q Consensus 357 ~l~~gs~dg~i~iwd~-~~~-------~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~v~v 411 (538)
.+..|+.+|.|+-.-+ ..+ ..+..+.. ...+|..|.+++...+|..++..+.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 4667888997653332 221 12333332 3468999999999999999988776665
No 396
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=22.37 E-value=6.1e+02 Score=25.52 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeecc--C----CCCCeEEEEEeecCCCceEEEEeCC-------
Q 009266 62 GCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHS--G----HNDNVFQAKIMPFTDDRSIVTCAAD------- 127 (538)
Q Consensus 62 ~~v~~~~~s~~g-~~l~t~~~d~~i~iw~~~~~~~~~~~~~--~----~~~~v~~l~~~~~~~~~~l~s~~~d------- 127 (538)
+.|..|+++|.. ..|..+...+.|..+. ..|+.-..+.. + ....|.+|++.|. +...|+.+...
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~-~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPV-DPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSS-STTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCC-CCCEEEEEeccccccccc
Confidence 389999999963 3455555455555554 23333222211 1 1246899999983 33344444321
Q ss_pred CcEEEeecccCceeeee-ecccc-------CCCcEEEEEcCCCCcEEEEEcC
Q 009266 128 GQVRHAQILERGGVETK-LLGKH-------QGRAHKLAIEPGSPHVFYTCGE 171 (538)
Q Consensus 128 g~v~vwd~~~~~~~~~~-~~~~~-------~~~v~~~~~~~~~~~~l~s~~~ 171 (538)
+...||....+...... .+... ...+..|++.|..+..|+.+..
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 12445554433221111 11100 1134679999977666777763
No 397
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.13 E-value=4e+02 Score=25.30 Aligned_cols=71 Identities=10% Similarity=0.072 Sum_probs=40.5
Q ss_pred CeEEEEEeec----CCCceEEEEeCCCcEEEeecc-cCc-------eeeeeeccccCCCcEEEEEcCCCCcEEEEEcCCC
Q 009266 106 NVFQAKIMPF----TDDRSIVTCAADGQVRHAQIL-ERG-------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173 (538)
Q Consensus 106 ~v~~l~~~~~----~~~~~l~s~~~dg~v~vwd~~-~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 173 (538)
..++|+.... .+-..++.|+.+|.|.-.-+. ... .+....+.....+|..|.+++.. ..|++++..+
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~-~~Lyv~s~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQ-QQLYIGSTAG 483 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTT-TEEEEEBSSC
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCC-CEEEEEECCe
Confidence 3466666541 122346678888877544332 211 11111122245789999999987 6788888776
Q ss_pred cEEE
Q 009266 174 LVQH 177 (538)
Q Consensus 174 ~i~i 177 (538)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 398
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.03 E-value=4e+02 Score=22.48 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=43.6
Q ss_pred eeEEEEecCCCcEEEEeccCCeEEEeeccCc-------ceeEEeecCcceeeEEeec-CCCCeEEEeecCCceEEecCCC
Q 009266 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-------ELIRVIEADRHVVNCIEPH-PHSTVLASSGIESDIKILTPNA 416 (538)
Q Consensus 345 i~~v~~~s~~~~~l~~gs~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~v~vw~~~~ 416 (538)
|.++.. ...+.+|+.++..|.++...+... ..+..++. ...+..+... .....|+..+..|.+..+.+..
T Consensus 86 Iv~~~~-~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 86 VDHMLM-ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp EEEEEC-CCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEE-eCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 555543 245667888999999998887432 22233332 2344444444 3445788888889888887653
Done!