Query 009268
Match_columns 538
No_of_seqs 419 out of 1829
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 22:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.3E-42 7.9E-47 349.0 37.1 405 28-506 22-436 (451)
2 3o7q_A L-fucose-proton symport 100.0 2.8E-38 9.5E-43 317.8 31.0 371 30-496 22-425 (438)
3 4gc0_A D-xylose-proton symport 100.0 1.7E-37 5.8E-42 316.9 16.0 440 28-519 6-477 (491)
4 2gfp_A EMRD, multidrug resista 100.0 6.9E-36 2.4E-40 293.9 16.0 356 37-489 3-362 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 9E-34 3.1E-38 289.3 27.1 379 95-505 49-473 (491)
6 2cfq_A Lactose permease; trans 100.0 3.2E-31 1.1E-35 264.0 20.7 351 95-503 38-399 (417)
7 2xut_A Proton/peptide symporte 100.0 1.1E-28 3.7E-33 253.7 17.1 379 106-503 53-502 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.5 3.4E-13 1.2E-17 136.9 19.6 180 315-503 14-196 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.5 2.3E-13 8E-18 136.5 17.1 177 315-505 29-208 (451)
10 3o7q_A L-fucose-proton symport 99.5 6.1E-13 2.1E-17 132.9 19.3 173 317-502 29-228 (438)
11 2xut_A Proton/peptide symporte 99.5 1.2E-12 4.2E-17 134.0 17.9 175 313-501 11-196 (524)
12 2gfp_A EMRD, multidrug resista 99.4 1.1E-12 3.8E-17 128.1 10.6 165 318-498 4-169 (375)
13 2cfq_A Lactose permease; trans 99.3 2E-12 6.8E-17 128.2 10.2 145 106-255 258-404 (417)
14 4gc0_A D-xylose-proton symport 99.1 1.9E-10 6.5E-15 116.6 10.2 151 106-256 311-468 (491)
15 3mkt_A Multi antimicrobial ext 44.4 2.1E+02 0.0073 27.1 32.4 29 186-214 145-173 (460)
16 2g9p_A Antimicrobial peptide l 39.7 11 0.00036 18.6 0.8 14 126-139 2-15 (26)
17 2jln_A MHP1; hydantoin, transp 37.8 3E+02 0.01 26.9 13.3 54 193-246 19-75 (501)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.3e-42 Score=348.97 Aligned_cols=405 Identities=22% Similarity=0.419 Sum_probs=332.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.++.+|..+...+++.+..+++...+++..|.+.++ + ++ ..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~-~s-------~~ 62 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------------------------------G-FS-------RG 62 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------------------------------T-TC-------SS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------h-cc-------Hh
Confidence 456678888899999999999999999999999887 6 66 88
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhc----cccccchhHHHHHHHHHHHHhhhccCc
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGM----GYFLDIHAFGFYLIMQMVAGLFQATGW 183 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~----a~~~~~~~~~~l~~~r~l~G~~~g~~~ 183 (538)
+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ + ++++.++++|+++|++.+...
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~ 137 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-----SSIAVMFVLLFLCGWFQGMGW 137 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-----SSSSHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc-----ccHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999 8 899999999999999999999
Q ss_pred hhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhC-chHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYG-WGWSFILPGASIVMGGIIVYLFLAAYPEDVGFP 261 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 261 (538)
+...+++.|++|+++|++++++...+..+|.++||++++++. .+| ||+.|++.+++.++..++.++.+||+|++....
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP 217 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC
Confidence 999999999999999999999999999999999999998866 678 999999999988887777778888877654332
Q ss_pred CCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009268 262 YANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYL 341 (538)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 341 (538)
..++...+.+. +. +++++ ++...+....++.+++|.++...+..++.....+.+..++|.|+
T Consensus 218 ~~~~~~~~~~~-------~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (451)
T 1pw4_A 218 PIEEYKNDYPD-------DY-NEKAE----------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL 279 (451)
T ss_dssp SCTTTCCC-------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred Chhhhcccccc-------cc-hhhhh----------cccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110000 00 00000 01111111246778889999999999999999999999999999
Q ss_pred hhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 009268 342 SQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMV 419 (538)
Q Consensus 342 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (538)
++. +|++..+++.+.+...++.+++.++.|++.||+ ++|+.+..+..+.....+++.......+.+...+..++
T Consensus 280 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (451)
T 1pw4_A 280 KEV----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 355 (451)
T ss_dssp TTB----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred HHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 997 699999999999999999999999999999999 99888877766665333333332222356666777778
Q ss_pred HHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH-HHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHH
Q 009268 420 AGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV-GAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAG 497 (538)
Q Consensus 420 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 497 (538)
.|++.+...+.....+.+.+|+ +.+|++.|+.+.+.++ |..++|.+.|.+.|. +|...|++.+++.+++.
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 427 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPK--------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 427 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCT--------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHhch--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 8888888888888888888886 8899999999999999 999999999999998 99999999888888877
Q ss_pred HHHHHHhhh
Q 009268 498 LLLSRLVIA 506 (538)
Q Consensus 498 ~~~~~~~~~ 506 (538)
++.++..++
T Consensus 428 ~~~~~~~~~ 436 (451)
T 1pw4_A 428 ILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 776655443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.8e-38 Score=317.84 Aligned_cols=371 Identities=13% Similarity=0.090 Sum_probs=301.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccch
Q 009268 30 TYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKL 109 (538)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 109 (538)
+.++..+..+++.++...++....++..|.+.++ +|++ ..+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~g~s-------~~~~ 63 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQA-------------------------------FTLT-------NFQA 63 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------SCCC-------SHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------------------cCCC-------HHHH
Confidence 3455566677777888888888888889998877 7888 9999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHH---hccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 110 GEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLF---GMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 110 g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~---~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
|++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++ +++ ++++.+++.|+++|++.+...+..
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc-----ccHHHHHHHHHHHHhhHHHhhhhH
Confidence 999999999999999999999999999999999999999999999 887 999999999999999999999999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhC--------------------------chHHHHHHHHH
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYG--------------------------WGWSFILPGAS 239 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~g--------------------------wr~~f~~~~~~ 239 (538)
.++++|++|+++|++++++.+.+..+|.+++|++++.+. +.+ ||+.|++.+++
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 218 (438)
T 3o7q_A 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887 432 99999888877
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH
Q 009268 240 IVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
.++..++.++ .++ |+..+.++ .++ ++++...++++++++|.++..
T Consensus 219 ~~~~~~~~~~-~~~-p~~~~~~~----~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 263 (438)
T 3o7q_A 219 VLLVALLIML-TKF-PALQSDNH----SDA-----------------------------KQGSFSASLSRLARIRHWRWA 263 (438)
T ss_dssp HHHHHHHHHH-CCC-CCCTTTCC----CCS-----------------------------STTSHHHHHHHHTTCSHHHHH
T ss_pred HHHHHHHHHH-HcC-Cccccccc----ccc-----------------------------cccchhhhHHHHHhChHHHHH
Confidence 6665443332 221 21111100 000 111223456788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFY-LSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPS 398 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 398 (538)
.+..++.......+..++|.| +++. +|++..+++.+.+...++.++++++.|++.||+++|+.+..+..+..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 339 (438)
T 3o7q_A 264 VLAQFCYVGAQTACWSYLIRYAVEEI----PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC 339 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999888888899999999999 8888 79999999999999999999999999999999999999888777766655
Q ss_pred HHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh
Q 009268 399 MLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS 478 (538)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 478 (538)
+++.. ..+.+ ..+..++.|++.+..++.......+.+++ + ++.+.++.. ...+|+.++|.+.|.+.
T Consensus 340 ~~~~~---~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~-~~~~g~~~~~~~~g~l~ 405 (438)
T 3o7q_A 340 LISAF---AGGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ--------D-TKYGSSFIV-MTIIGGGIVTPVMGFVS 405 (438)
T ss_dssp HHHHH---CCHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGG--------G-HHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHHHH---cCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc--------c-ccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence 54443 22333 34455778888888888888888888774 3 677777776 67799999999999999
Q ss_pred cc-C-chHHHHHHHHHHHHH
Q 009268 479 TQ-G-WDAVFIMLMVGALIA 496 (538)
Q Consensus 479 ~~-g-~~~~~~~~~~~~~~~ 496 (538)
|. + ++..|++.+++.++.
T Consensus 406 ~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 406 DAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHTSSGGGGHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHH
Confidence 98 7 998888765554443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.7e-37 Score=316.88 Aligned_cols=440 Identities=12% Similarity=0.003 Sum_probs=299.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.+++.|.+.+...++.+...+|...++.++|.+.+++..+ .+.+ .+.+..
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~---------------------------~~~~---~~~~~~ 55 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAP---------------------------QNLS---ESAANS 55 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGG---------------------------GCCC---HHHHHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------------------CCCC---cccHHH
Confidence 3456677777777888888899999998888887653211 0000 111256
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhcccc-------------ccchhHHHHHHHHHH
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYF-------------LDIHAFGFYLIMQMV 174 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~-------------~~~~~~~~l~~~r~l 174 (538)
+.|++.+++.+|..+|++++|+++||+|||++++++.+++.+++++++++.. ...+|+++++++|++
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999985200 001899999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH---------hCchHHHHHHHHHHHHHHH
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD---------YGWGWSFILPGASIVMGGI 245 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~---------~gwr~~f~~~~~~~~~~~~ 245 (538)
+|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++..+.. .+||+.+.+..+..++. +
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 214 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-L 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-h
Confidence 9999999999999999999999999999999999999999999888877652 24777777777666654 6
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHH-
Q 009268 246 IVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLF- 324 (538)
Q Consensus 246 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (538)
+..+++||+|++...+.++++..+..++...++...++..+..... ...++.......++.++........+
T Consensus 215 ~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4gc0_A 215 MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSL-------DHGRKTGGRLLMFGVGVIVIGVMLSIF 287 (491)
T ss_dssp HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHTTHHHHSCCTHHHHHHHHHHH
T ss_pred hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHH-------HhhhhhhhHHHHhcccHHHHHHHHHHH
Confidence 6677889999886554333222211111100000000000000000 00011111122333333333333333
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 009268 325 FAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRT 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 404 (538)
......+.+..+.|.+.+.. +.+...........++..+++.++.+++.||+|||+.+..+.....++.+.+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 288 QQFVGINVVLYYAPEVFKTL-----GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHhcchHHHHhc-----CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 33334455666667776665 7777777777778889999999999999999999999888877776665554332
Q ss_pred c-cCchHHHHHHHHHHHHHh-hccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--
Q 009268 405 Y-GSVSQTVNIVLMMVAGLF-VNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-- 480 (538)
Q Consensus 405 ~-~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-- 480 (538)
. .....+..++..++...+ ..+..+....+.+|.+|+ +.|+++.|+.++++.+++.+++.+.+.+.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt--------~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~ 434 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN--------AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW 434 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT--------TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH
T ss_pred HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122222223322222222 233345566778888886 8899999999999999999999888776543
Q ss_pred -----CchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCC
Q 009268 481 -----GWDAVFIMLMVGALIAGLLLSRLVIAEITEKIRRPVTTT 519 (538)
Q Consensus 481 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (538)
++...|++.+++.+++.++.+++. +|+|++..+|.++-
T Consensus 435 ~~~~~~~~~~~~i~~~~~~~~~i~~~~~~-PETkg~tLeei~~~ 477 (491)
T 4gc0_A 435 LVAHFHNGFSYWIYGCMGVLAALFMWKFV-PETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHC-CCCTTCCHHHHGGG
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhee-cCCCCCCHHHHHHH
Confidence 455677788888777776665444 57777777666554
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=6.9e-36 Score=293.93 Aligned_cols=356 Identities=12% Similarity=0.060 Sum_probs=289.4
Q ss_pred HHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHH
Q 009268 37 LITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAF 116 (538)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~ 116 (538)
..+++..+....+...+.+..|.+.++ +|++ ..+.|++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~g~s-------~~~~g~~~~~~ 44 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD-------------------------------LNVR-------EGAVQSVMGAY 44 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-------------------------------SSST-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-------------------------------cCCC-------HHHHHHHHHHH
Confidence 345556666777777778888888877 7888 89999999999
Q ss_pred HHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhccccc
Q 009268 117 LACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGK 196 (538)
Q Consensus 117 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 196 (538)
.++..++++++|+++||+|||++++.+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|+
T Consensus 45 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 119 (375)
T 2gfp_A 45 LLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER 119 (375)
T ss_dssp HHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH
Confidence 99999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 009268 197 RKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPN 275 (538)
Q Consensus 197 ~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 275 (538)
++|++++++.+....+|..++|.+++++. ++|||+.|++.+++.++..++..+.+||++++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 185 (375)
T 2gfp_A 120 TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR-------------- 185 (375)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc--------------
Confidence 99999999999999999999999999887 579999999988887776554566666654332110
Q ss_pred ccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcch
Q 009268 276 DEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKT 355 (538)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~ 355 (538)
++...++++.+|+|+++...+..++.......+..+.|.|+++. +|+++.+
T Consensus 186 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~ 236 (375)
T 2gfp_A 186 -------------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV----LGLSSMT 236 (375)
T ss_dssp -------------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH----HHHHHHH
T ss_pred -------------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHH
Confidence 01122346778889999988888888889999999999999996 5999999
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHH-HHhhccCchHHHHHHHHHHHHHhhccchhhHHH
Q 009268 356 AGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY-AAIPSML-LYRTYGSVSQTVNIVLMMVAGLFVNGPYALITT 433 (538)
Q Consensus 356 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 433 (538)
++.+.+...++.+++.++.+++.||.+++.. .+... ...+..+ ........+.+...+..++.|++.+...+....
T Consensus 237 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 314 (375)
T 2gfp_A 237 VSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATS 314 (375)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999987322 22222 1111111 111111124455556677788888888888888
Q ss_pred HHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 434 AVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
...+..| +.+|++.|+.+....+|..++|.+.|.+.+. ++...+.+.
T Consensus 315 ~~~~~~p---------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 315 GAMEPFP---------FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHTHHH---------HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---------cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 8888775 6689999999999999999999999999877 777666553
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=9e-34 Score=289.27 Aligned_cols=379 Identities=12% Similarity=0.047 Sum_probs=268.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhh-cCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDT-LDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
+|++ ..+.|++.+.+.++..++++++|+++|| +|||++++.+.++.+++.++++++ ++++.++++|+
T Consensus 49 ~~~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 116 (491)
T 4aps_A 49 LHIT-------RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----FGASALFGSII 116 (491)
T ss_dssp CCSC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----CSTTHHHHHHH
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHH
Confidence 6777 8999999999999999999999999999 899999999999999999999998 99999999999
Q ss_pred HHHhhhccCchhhhhhhhcccccCc--cchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRK--RGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
++|++.+...+...++++|++|+++ |+.++++++.+.++|..+||.+++++. +.|||+.|++.++..++..++.++.
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988 777888899999999999999999988 5899999999877766654444444
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc-------------ccccCccccc------------------CC
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTA-------------AVENNSGIRY------------------GS 299 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~------------------~~ 299 (538)
.++..++....+++. ....+.....+... .........+ ..
T Consensus 197 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (491)
T 4aps_A 197 GKKTLDPHYLRPTDP--------LAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWM 268 (491)
T ss_dssp HHTTCCSCCSCCSCC--------CSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccCCCCc--------cccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHH
Confidence 333222111110000 00000000000000 0000000000 00
Q ss_pred CCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHH
Q 009268 300 GSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISD 379 (538)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d 379 (538)
.+.+.....+..+....+...+..++....+.....++|.|..+. .+.+....+.+.....++.+++.++.+++.|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 344 (491)
T 4aps_A 269 ISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER----VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWT 344 (491)
T ss_dssp C------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS----CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH----hccCccCHHHHhccchHHHHHHHHHHHHHHH
Confidence 000000001111222344455555555666666777888899887 5777778889999999999999999999999
Q ss_pred HHhHHHHHH-----HHHHHHHHHHHHHHhhc------cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccc
Q 009268 380 KLKARATTA-----ATFMYAAIPSMLLYRTY------GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGD 448 (538)
Q Consensus 380 r~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (538)
|++||+... .+..+..++.+++.... ...+.+...+..++.|++.+...+....++.+..|+
T Consensus 345 r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~------- 417 (491)
T 4aps_A 345 AWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK------- 417 (491)
T ss_dssp HTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------
T ss_pred HHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------
Confidence 999876533 44444444333332211 122455666777788888888888889999998886
Q ss_pred cchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 449 SRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 449 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
+.+|++.|+.+....+|..++|.+.+.+.+.++...|...+++.+++.++.++..+
T Consensus 418 -~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 418 -AFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp -TCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999998888888888888877777666655433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=3.2e-31 Score=264.04 Aligned_cols=351 Identities=13% Similarity=0.079 Sum_probs=238.3
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHH---HHHhccccccchhH-HHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFV---GLFGMGYFLDIHAF-GFYLI 170 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~---~~~~~a~~~~~~~~-~~l~~ 170 (538)
+|++ ..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. +.+.++ +.. ..++.
T Consensus 38 ~g~s-------~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 105 (417)
T 2cfq_A 38 NHIS-------KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-----PLLQYNILV 105 (417)
T ss_dssp TCCC-------TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-----HHHHTTCCH
T ss_pred hCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 6777 8899999999999999999999999999999999999888775532 212222 211 12344
Q ss_pred HHHHHHhhhccCchhhhhhhhccccc--CccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 009268 171 MQMVAGLFQATGWPSVVAVIGNWFGK--RKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVY 248 (538)
Q Consensus 171 ~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~ 248 (538)
.+++.|++.+...+.....+.++.++ ++++...+.......+|..++|.+++++.+.+||+.|++.+++.++. ++..
T Consensus 106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~-~~~~ 184 (417)
T 2cfq_A 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL-AVLL 184 (417)
T ss_dssp HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTH-HHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HHHH
Confidence 55555555554444444445555443 45677788888888999999999999998889999999877665443 3333
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHH
Q 009268 249 LFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKL 328 (538)
Q Consensus 249 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
+..++++++.. ++++..+ . + +++....+.++++++|+++...+..+....
T Consensus 185 ~~~~~~~~~~~---~~~~~~~---------~-------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T 2cfq_A 185 FFAKTDAPSSA---TVANAVG---------A-------N-----------HSAFSLKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp CSSCCCCSCSS---CSSSSSS---------S-------C-----------CCCCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCccccccc---ccccccc---------c-------c-----------cccccHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 33333221110 0000000 0 0 001111234567888888777666565555
Q ss_pred HHHHHHHHHHHHhhhcccCCcC---CCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEY---LSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY 405 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (538)
.++.+..++|.|+.+. ++ .+....+...+...++.+++.++.+++.||+++|+.+..+..+.++..+++..
T Consensus 235 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-- 308 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSF----FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-- 308 (417)
T ss_dssp HHHHHHHHHHHHHHHT----SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHH----HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--
Confidence 6666667789888765 33 23445577777778888899999999999999999887776665554333322
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHH-HhHhHHHHHHhHHHHHHhhcc-Cch
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAII-DGTGSVGAALGPLLTGFLSTQ-GWD 483 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~-g~~ 483 (538)
..+.+...+..++.+++.....+....+..+..|+ +.+|++.|+. +....+|+.++|.+.|.+.+. ++.
T Consensus 309 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~ 379 (417)
T 2cfq_A 309 -ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV--------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp -CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH--------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHH
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcH
Confidence 23444444444555555554555566777787775 8899999994 888899999999999999987 888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009268 484 AVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~ 503 (538)
..|.+.+++.+++.++.+..
T Consensus 380 ~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 380 GAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88888888877776655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.1e-28 Score=253.75 Aligned_cols=379 Identities=10% Similarity=-0.000 Sum_probs=226.0
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhc-CChhhHHHHHHHHHHHHHHHhccccccch-hHHHHHHHHHHHHhhhccCc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTL-DLRLFLTTGMVGSGIFVGLFGMGYFLDIH-AFGFYLIMQMVAGLFQATGW 183 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~~~~a~~~~~~-~~~~l~~~r~l~G~~~g~~~ 183 (538)
..+.|++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.++++++ + +++.+++.|++.|++.+...
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-----EHSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhccccc
Confidence 89999999999999999999999999999 99999999999999999999998 7 99999999999999999999
Q ss_pred hhhhhhhhcccccCccchhhHH---HHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGV---WNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVG 259 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~ 259 (538)
+...+++.|++|+++|+++.+. ...+.++|..+||.+++++. ..|||+.|++.+++.++..++.++..++.++...
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 9999999999999999877666 89999999999999999887 4799999999888766643333332222111110
Q ss_pred CCCCCCCCCCCCCC-CCccccccccc------------------cccc---------------cccCcccccCCCCcccc
Q 009268 260 FPYANDPIPSSERL-PNDEESHMQKG------------------KTAA---------------VENNSGIRYGSGSRTSV 305 (538)
Q Consensus 260 ~~~~~~~~~~~~~~-~~~~~~~~~~~------------------~~~~---------------~~~~~~~~~~~~~~~~~ 305 (538)
......+..+.... ..+.+...+.. .... ...+..+.+........
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (524)
T 2xut_A 208 EPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH 287 (524)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC
T ss_pred CCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc
Confidence 00000000000000 00000000000 0000 00000000000000000
Q ss_pred chhhhhccCchHHHHHHHHHHHHHHHH----HHHHHHHHhhhcccCCcCCCc-chhhhhhhhhhhhhhhHHHHHHHHH--
Q 009268 306 GLFQACLIPGVIPFAFCLFFAKLVAYT----FLYWLPFYLSQTEIGGEYLSV-KTAGNLSTLFDVGGIFGGIIAGYIS-- 378 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~-- 378 (538)
+..+....++.+.... .+......+. ....++.+..+. +.+. ...+.+.....++.+++..+.+++.
T Consensus 288 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (524)
T 2xut_A 288 PDAAVDGVRSVLRILV-LFALVTPFWSLFDQKASTWILQANDM-----VKPQWFEPAMMQALNPLLVMLLIPFNNFVLYP 361 (524)
T ss_dssp CSSSSTTTTTHHHHHH-HHTTSHHHHTTTSSTTTHHHHHHHHS-----CCCSSSCHHHHHTTSGGGHHHHGGGTTTC---
T ss_pred cHhHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhHHhHHhc-----CCCeeecHHHHHHHHHHHHHHhHHHHHhhhHH
Confidence 0000111122221111 1111111111 112223332222 2221 2455666666666666666666653
Q ss_pred --HHHhHH----HHHHHHHHHHHHHHHHHHhhc------cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccc
Q 009268 379 --DKLKAR----ATTAATFMYAAIPSMLLYRTY------GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVR 446 (538)
Q Consensus 379 --dr~~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (538)
+|.++| +.+..+..+.+++.+++.... ...+.+..++..++.|++.+...+.......+..|+
T Consensus 362 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~----- 436 (524)
T 2xut_A 362 AIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK----- 436 (524)
T ss_dssp ---------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT-----
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence 444332 334444444444333332211 123455566677788888888888888888888886
Q ss_pred cccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc---Cc---------hHHHHHHHHHHHHHHHHHHHH
Q 009268 447 GDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ---GW---------DAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 447 ~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---g~---------~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+.+|+++|+.++...+|+.++|.+.|.+.+. +| ...|++.+++.+++.++.+++
T Consensus 437 ---~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 437 ---AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp ---TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ---HHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999874 22 223666666666655555444
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.53 E-value=3.4e-13 Score=136.93 Aligned_cols=180 Identities=16% Similarity=0.204 Sum_probs=147.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH-HhHHHHHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTE-IGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK-LKARATTAATFM 392 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~ 392 (538)
.++...+..++..+.++....+++.|+.+.. .+++|++..+.+++.+...++..++.++.|+++|| +|||+.+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4566777778888888899899999998730 00138999999999999999999999999999999 899999998888
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHH
Q 009268 393 YAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPL 472 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 472 (538)
+..++.++... ..+.+..++..++.|++.+...+....++.+.+++++ +.|+.+.++.+....+|..++|.
T Consensus 94 ~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~ 164 (491)
T 4aps_A 94 LIMLGHIVLAL---PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD------RRRDAGFSIFVFGINLGAFIAPL 164 (491)
T ss_dssp HHHHHHHHHHS---CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT------THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc------ccceeeehHHHHHHHHHHHHHHH
Confidence 87777666544 3456667777888899998889999999999888632 44888999999999999999999
Q ss_pred HHHHhhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 473 LTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 473 ~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+.+.+.+. +|+..|++.++..+++.++..+.
T Consensus 165 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 99999998877776666555443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=2.3e-13 Score=136.45 Aligned_cols=177 Identities=19% Similarity=0.211 Sum_probs=140.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYA 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 394 (538)
.++...+..+........+...+|.+.++ + .+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQ-----G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSS-----T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34445555555555555566667766544 6 88899999999999999999999999999999999999888888
Q ss_pred HHHHHHHHhhcc-CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 395 AIPSMLLYRTYG-SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 395 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
+++.++...... ..+.+..++..++.|++.+...+....++.+.+++ +.|+++.|+.+....+|..++|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--------KERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT--------THHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc--------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777666654110 23556667778889999988899999999998886 889999999999999999999999
Q ss_pred HHHhhcc-C-chHHHHHHHHHHHHHHHHHHHHhh
Q 009268 474 TGFLSTQ-G-WDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 474 ~g~l~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
.+.+.+. + |+..|++.+++.++..++..+..+
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9998776 7 999999888887776665554443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=6.1e-13 Score=132.91 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
..+.+..+...+........+|.+.++. |.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAF-----TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 3444555555666666677778766664 99999999999999999999999999999999999999998888887
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHH
Q 009268 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 476 (538)
+.++........+.+..++..++.|++.+...+....++.+..++ +.|+.+.|+.+....+|..++|.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE--------SSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--------TTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776663222245777778888999999999999999999998886 889999999999999999999999999
Q ss_pred hh-cc-C-------------------------chHHHHHHHHHHHHHHHHHHH
Q 009268 477 LS-TQ-G-------------------------WDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 477 l~-~~-g-------------------------~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+. +. + |+..|++.+++.++..++..+
T Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88 55 3 888887777666655544433
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.46 E-value=1.2e-12 Score=133.98 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=144.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcC------CCcchhhhhhhhhhhhhhhHHHHHHHHHHHH-hHHH
Q 009268 313 IPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEY------LSVKTAGNLSTLFDVGGIFGGIIAGYISDKL-KARA 385 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~ 385 (538)
.|.++.+.+..++..+.++....+++.|+.+. +| ++..+.+++.+...++.+++.++.|+++||+ |||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTA----LLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 35677788888888899999999999999887 68 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHH---HHHHhH
Q 009268 386 TTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVT---AIIDGT 462 (538)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---g~~~~~ 462 (538)
.+..+..+..++.++.... ..+.+..++..++.|++.+...+....++.+.+++ +.|+++. ++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~ 156 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--------SNKSLAQKAFDMFYFT 156 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--------TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--------cchHHHHHHHHHHHHH
Confidence 9888887777766655442 12666777778888999999999999999998886 5565444 448899
Q ss_pred hHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHH
Q 009268 463 GSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 463 ~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
.++|..++|.+.+.+.+. +|+..|++.+++.+++.++..
T Consensus 157 ~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 157 INFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 999999988877666555443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.38 E-value=1.1e-12 Score=128.09 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009268 318 PFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIP 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 397 (538)
.+.+..++.......+...+|.+.++. |.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDL-----NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-----SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 445566666667777777788877665 999999999999999999999999999999999999999888887777
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh
Q 009268 398 SMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477 (538)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 477 (538)
.++.... ++.+..++..++.|++.+...+.....+.+..++ ++|+++.++.+....+|..++|.+.+.+
T Consensus 79 ~~~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 79 TLVAVTT---SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER--------TQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------SSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHh---ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH--------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6665542 4667777778888999888888888999888876 7788999999999999999999999999
Q ss_pred hcc-CchHHHHHHHHHHHHHHH
Q 009268 478 STQ-GWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 478 ~~~-g~~~~~~~~~~~~~~~~~ 498 (538)
.+. +|+..|++.+++.++..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 148 DTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHHHHH
Confidence 988 999999887777666544
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.35 E-value=2e-12 Score=128.22 Aligned_cols=145 Identities=14% Similarity=0.006 Sum_probs=121.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
....|++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++. ++.+.+++..++.+++.+...+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~ 332 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----CSHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888888888999999999999999999999999998888888788776 77888888888888887777777
Q ss_pred hhhhhhcccccCccchhhHH-HHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGV-WNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYP 255 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 255 (538)
...++.|.+|++.|+.+.++ ++....+|..++|.++|++. +.|++..|.+.+++.++..++.++..||++
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 78899999999999999998 47888899999999999887 468899999888887776555555555543
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.10 E-value=1.9e-10 Score=116.58 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=111.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
............+...++.++.+++.||+|||+.++.+....+++.+..+.......++...+...-+..+.......+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHH
Confidence 44556667777888889999999999999999999999888887777665432222222222222222222222344577
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-------HhCchHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-------DYGWGWSFILPGASIVMGGIIVYLFLAAYPE 256 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~ 256 (538)
...+.+|.+|.+.|+.++|+......+|..+++.+...+. ..++.+.|++.++++++..+..++++||+..
T Consensus 391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 7889999999999999999999999999888876655443 3567788999999988888888899998754
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=44.41 E-value=2.1e+02 Score=27.11 Aligned_cols=29 Identities=7% Similarity=-0.151 Sum_probs=16.6
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhH
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGN 214 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 214 (538)
........+..+++.+...+......+-.
T Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (460)
T 3mkt_A 145 LFQALRSFTDGMSLTKPAMVIGFIGLLLN 173 (460)
T ss_dssp HHHHHTTTTCTTSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 34445556666677776666655544433
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=39.71 E-value=11 Score=18.64 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=11.0
Q ss_pred hhhhhhhhcCChhh
Q 009268 126 VAGHLGDTLDLRLF 139 (538)
Q Consensus 126 ~~G~l~dr~Grr~~ 139 (538)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36888999999864
No 17
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=37.76 E-value=3e+02 Score=26.89 Aligned_cols=54 Identities=7% Similarity=-0.093 Sum_probs=27.4
Q ss_pred ccccCcc-chhhHHHHHHHhhhHhHHHH-HHHHHH-HhCchHHHHHHHHHHHHHHHH
Q 009268 193 WFGKRKR-GLIMGVWNAHTSVGNISGSL-LAASVL-DYGWGWSFILPGASIVMGGII 246 (538)
Q Consensus 193 ~~~~~~r-~~~~~~~~~~~~~g~~ig~~-l~~~l~-~~gwr~~f~~~~~~~~~~~~~ 246 (538)
-.|+++| .....+.....+....++.. +++.+. ..+|+..++...+-.++.+++
T Consensus 19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~ 75 (501)
T 2jln_A 19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVIL 75 (501)
T ss_dssp CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHH
Confidence 3566666 45555555555555445544 333333 356777766544444443333
Done!