Query 009269
Match_columns 538
No_of_seqs 228 out of 1391
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 22:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-121 2E-126 1024.3 42.6 459 1-497 36-591 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-102 4E-107 841.4 39.7 474 1-496 26-526 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 9.7E-98 2E-102 771.0 23.1 318 1-328 1-319 (319)
4 COG1874 LacA Beta-galactosidas 100.0 4E-43 8.7E-48 388.4 6.8 461 1-497 7-513 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 2.7E-21 5.9E-26 204.5 9.3 138 16-169 2-161 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.3 2.3E-10 4.9E-15 117.6 18.5 147 1-182 7-159 (298)
7 PF00150 Cellulase: Cellulase 99.1 2.1E-09 4.6E-14 107.5 17.0 157 4-182 3-172 (281)
8 PRK10150 beta-D-glucuronidase; 99.1 1.6E-08 3.5E-13 113.8 25.8 142 1-171 284-439 (604)
9 smart00633 Glyco_10 Glycosyl h 98.8 1.2E-07 2.7E-12 95.5 14.4 113 47-184 3-127 (254)
10 PRK10340 ebgA cryptic beta-D-g 98.6 5.2E-07 1.1E-11 107.3 15.6 135 1-171 326-466 (1021)
11 PRK09525 lacZ beta-D-galactosi 98.5 8.9E-07 1.9E-11 105.3 15.1 132 1-171 342-479 (1027)
12 COG3250 LacZ Beta-galactosidas 98.5 7.3E-07 1.6E-11 102.9 13.8 112 1-153 292-409 (808)
13 PLN02161 beta-amylase 98.4 7.6E-07 1.7E-11 96.4 10.1 83 23-109 116-207 (531)
14 PLN02803 beta-amylase 98.4 8.3E-07 1.8E-11 96.6 10.4 118 23-148 106-253 (548)
15 PLN00197 beta-amylase; Provisi 98.4 9.3E-07 2E-11 96.4 10.4 118 23-148 126-273 (573)
16 PLN02705 beta-amylase 98.4 1.1E-06 2.3E-11 96.7 10.1 119 23-148 267-415 (681)
17 PLN02905 beta-amylase 98.4 1.4E-06 3E-11 96.0 10.3 119 23-148 285-433 (702)
18 PLN02801 beta-amylase 98.4 1.8E-06 3.9E-11 93.6 10.3 119 23-148 36-184 (517)
19 PF13204 DUF4038: Protein of u 98.3 3.7E-05 8E-10 79.4 19.4 237 2-265 5-274 (289)
20 TIGR03356 BGL beta-galactosida 98.2 7.3E-06 1.6E-10 89.0 9.9 98 23-133 53-151 (427)
21 PF01373 Glyco_hydro_14: Glyco 98.2 1.8E-06 3.9E-11 91.9 4.8 114 25-148 17-153 (402)
22 PF00331 Glyco_hydro_10: Glyco 98.1 0.0001 2.2E-09 77.2 16.2 269 11-324 11-319 (320)
23 PF03198 Glyco_hydro_72: Gluca 97.8 0.00046 9.9E-09 71.6 13.9 194 4-236 22-248 (314)
24 COG3693 XynA Beta-1,4-xylanase 97.4 0.0013 2.8E-08 68.4 11.2 129 33-184 55-195 (345)
25 PRK09852 cryptic 6-phospho-bet 97.4 0.00025 5.4E-09 78.1 5.8 113 23-143 70-184 (474)
26 PRK15014 6-phospho-beta-glucos 97.3 0.00046 9.9E-09 76.1 6.8 100 24-131 69-170 (477)
27 PLN02998 beta-glucosidase 97.3 0.00041 9E-09 76.8 6.4 114 23-144 81-195 (497)
28 PF00232 Glyco_hydro_1: Glycos 97.2 0.0002 4.3E-09 78.4 3.5 109 23-151 57-167 (455)
29 PLN02814 beta-glucosidase 97.2 0.00051 1.1E-08 76.3 6.5 112 23-142 76-188 (504)
30 PRK09593 arb 6-phospho-beta-gl 97.1 0.0008 1.7E-08 74.2 6.8 104 23-134 72-177 (478)
31 PRK09589 celA 6-phospho-beta-g 97.1 0.00081 1.8E-08 74.2 6.6 112 23-142 66-179 (476)
32 PLN02849 beta-glucosidase 97.1 0.00089 1.9E-08 74.3 6.3 113 23-143 78-191 (503)
33 COG2730 BglC Endoglucanase [Ca 97.0 0.0031 6.7E-08 68.2 9.8 114 23-153 67-193 (407)
34 PF07745 Glyco_hydro_53: Glyco 96.9 0.003 6.4E-08 66.6 8.5 106 27-152 27-136 (332)
35 PRK13511 6-phospho-beta-galact 96.8 0.0017 3.6E-08 71.6 6.2 98 23-129 53-151 (469)
36 PF14488 DUF4434: Domain of un 96.8 0.035 7.5E-07 53.0 14.1 127 19-171 15-151 (166)
37 TIGR01233 lacG 6-phospho-beta- 96.8 0.0021 4.6E-08 70.8 6.5 97 23-128 52-149 (467)
38 PF02837 Glyco_hydro_2_N: Glyc 96.8 0.0026 5.6E-08 59.4 6.2 92 381-481 64-163 (167)
39 PF13364 BetaGal_dom4_5: Beta- 96.3 0.016 3.4E-07 51.6 7.6 79 375-462 25-110 (111)
40 COG2723 BglB Beta-glucosidase/ 96.2 0.0082 1.8E-07 65.5 6.1 103 23-133 58-162 (460)
41 COG3867 Arabinogalactan endo-1 96.1 0.033 7.2E-07 57.5 9.4 110 27-152 66-182 (403)
42 PF02638 DUF187: Glycosyl hydr 94.7 0.11 2.4E-06 54.4 8.2 118 22-148 17-161 (311)
43 PF14871 GHL6: Hypothetical gl 94.5 0.22 4.8E-06 45.8 8.7 95 28-131 4-123 (132)
44 smart00642 Aamy Alpha-amylase 93.5 0.22 4.8E-06 47.4 7.1 66 23-88 18-95 (166)
45 TIGR01515 branching_enzym alph 92.7 2.1 4.6E-05 49.0 14.5 57 27-83 159-226 (613)
46 PRK09936 hypothetical protein; 91.9 2.4 5.3E-05 44.0 12.3 57 20-82 34-91 (296)
47 TIGR00542 hxl6Piso_put hexulos 91.5 5.6 0.00012 40.3 14.6 128 23-178 15-151 (279)
48 PRK09441 cytoplasmic alpha-amy 91.2 0.38 8.3E-06 53.1 6.2 68 16-83 7-101 (479)
49 PF13200 DUF4015: Putative gly 90.9 0.71 1.5E-05 48.6 7.5 61 23-83 12-81 (316)
50 PF01229 Glyco_hydro_39: Glyco 90.9 1.3 2.8E-05 49.2 9.9 68 14-84 29-105 (486)
51 COG1649 Uncharacterized protei 90.7 1 2.3E-05 49.0 8.7 140 22-169 62-226 (418)
52 COG3934 Endo-beta-mannanase [C 90.3 0.18 4E-06 55.1 2.6 155 2-169 4-168 (587)
53 PF01261 AP_endonuc_2: Xylose 90.1 1.6 3.4E-05 41.3 8.6 125 30-181 1-133 (213)
54 PRK01060 endonuclease IV; Prov 89.9 5.4 0.00012 40.3 12.8 93 26-146 14-109 (281)
55 TIGR03234 OH-pyruv-isom hydrox 89.4 8.6 0.00019 38.3 13.7 44 25-82 15-58 (254)
56 PRK14706 glycogen branching en 89.0 8.3 0.00018 44.5 14.7 54 30-83 174-237 (639)
57 KOG0496 Beta-galactosidase [Ca 88.7 0.19 4E-06 56.9 1.2 76 270-349 272-350 (649)
58 PRK13210 putative L-xylulose 5 88.5 9 0.0002 38.6 13.2 130 24-178 16-151 (284)
59 PF00128 Alpha-amylase: Alpha 88.4 0.63 1.4E-05 46.6 4.7 57 27-83 7-72 (316)
60 PF05913 DUF871: Bacterial pro 88.1 0.81 1.8E-05 49.0 5.6 72 12-89 2-73 (357)
61 PLN02447 1,4-alpha-glucan-bran 87.5 1.3 2.9E-05 51.6 7.2 63 23-85 250-322 (758)
62 PRK05402 glycogen branching en 87.5 9.6 0.00021 44.6 14.2 51 30-83 272-335 (726)
63 PRK10150 beta-D-glucuronidase; 87.3 2.1 4.6E-05 48.7 8.6 91 383-482 63-177 (604)
64 PRK12568 glycogen branching en 86.9 19 0.00042 42.2 16.0 57 27-85 273-341 (730)
65 PRK12313 glycogen branching en 85.3 1.8 3.9E-05 49.6 6.8 54 30-83 177-240 (633)
66 TIGR02402 trehalose_TreZ malto 84.6 1.8 3.9E-05 48.8 6.3 57 27-83 114-180 (542)
67 PF02679 ComA: (2R)-phospho-3- 84.1 3.3 7.2E-05 42.1 7.3 52 23-84 83-134 (244)
68 KOG0626 Beta-glucosidase, lact 84.1 2.7 5.9E-05 46.9 7.1 114 25-146 92-208 (524)
69 TIGR02104 pulA_typeI pullulana 83.1 2.3 5E-05 48.5 6.4 56 28-83 168-249 (605)
70 PLN02960 alpha-amylase 83.0 2.7 5.8E-05 49.8 6.9 57 27-83 420-486 (897)
71 PRK09505 malS alpha-amylase; R 81.7 3.2 7E-05 48.1 6.9 59 25-83 231-312 (683)
72 PRK10785 maltodextrin glucosid 81.7 3 6.6E-05 47.6 6.6 57 26-82 181-245 (598)
73 TIGR02403 trehalose_treC alpha 81.1 2.6 5.6E-05 47.6 5.7 59 23-83 26-95 (543)
74 cd06593 GH31_xylosidase_YicI Y 81.0 3.8 8.1E-05 42.5 6.6 69 21-89 21-92 (308)
75 cd00019 AP2Ec AP endonuclease 80.4 46 0.001 33.6 14.2 58 20-82 7-65 (279)
76 PRK09997 hydroxypyruvate isome 80.1 34 0.00074 34.2 13.0 49 16-81 10-58 (258)
77 PRK13209 L-xylulose 5-phosphat 80.1 36 0.00078 34.4 13.2 127 24-178 21-156 (283)
78 TIGR02456 treS_nterm trehalose 80.0 4 8.6E-05 45.9 6.8 57 24-82 28-95 (539)
79 PRK10933 trehalose-6-phosphate 79.9 4.2 9.2E-05 46.0 7.0 55 25-82 34-100 (551)
80 PRK09856 fructoselysine 3-epim 79.8 65 0.0014 32.3 15.0 53 24-81 13-65 (275)
81 PLN02361 alpha-amylase 78.4 5.2 0.00011 43.6 6.8 57 27-83 32-96 (401)
82 PRK14705 glycogen branching en 77.4 4.8 0.0001 49.6 6.8 55 28-82 770-834 (1224)
83 KOG2230 Predicted beta-mannosi 76.8 11 0.00023 42.7 8.5 110 2-150 330-444 (867)
84 PRK09989 hypothetical protein; 76.4 48 0.001 33.1 12.8 44 25-82 16-59 (258)
85 cd06592 GH31_glucosidase_KIAA1 75.7 9.3 0.0002 39.7 7.6 67 19-88 25-95 (303)
86 PF01261 AP_endonuc_2: Xylose 75.7 19 0.00042 33.7 9.3 120 24-170 27-153 (213)
87 cd06591 GH31_xylosidase_XylS X 73.9 7.4 0.00016 40.8 6.3 66 22-88 22-91 (319)
88 PRK10340 ebgA cryptic beta-D-g 73.8 9.4 0.0002 46.5 8.0 100 384-492 108-217 (1021)
89 COG0296 GlgB 1,4-alpha-glucan 73.7 9.2 0.0002 43.9 7.4 58 23-82 164-233 (628)
90 cd06602 GH31_MGAM_SI_GAA This 73.7 45 0.00097 35.4 12.2 74 16-90 13-93 (339)
91 smart00812 Alpha_L_fucos Alpha 73.5 28 0.00061 37.7 10.8 107 18-134 78-192 (384)
92 cd06595 GH31_xylosidase_XylS-l 73.3 16 0.00035 37.8 8.6 65 22-86 23-97 (292)
93 TIGR02100 glgX_debranch glycog 72.0 6.4 0.00014 45.8 5.8 55 29-83 189-265 (688)
94 TIGR02631 xylA_Arthro xylose i 72.0 55 0.0012 35.4 12.6 100 22-145 30-134 (382)
95 TIGR03849 arch_ComA phosphosul 71.6 9.3 0.0002 38.7 6.1 53 23-85 70-122 (237)
96 cd04908 ACT_Bt0572_1 N-termina 71.5 13 0.00029 29.2 5.9 55 23-81 12-66 (66)
97 PF02065 Melibiase: Melibiase; 71.1 48 0.001 36.1 11.9 114 16-130 50-181 (394)
98 PLN00196 alpha-amylase; Provis 71.1 12 0.00026 41.1 7.4 57 27-83 47-112 (428)
99 smart00518 AP2Ec AP endonuclea 70.8 93 0.002 31.2 13.3 101 14-146 3-104 (273)
100 TIGR01531 glyc_debranch glycog 70.6 17 0.00036 45.4 9.0 97 17-120 123-236 (1464)
101 TIGR02401 trehalose_TreY malto 70.0 11 0.00024 44.6 7.2 64 22-85 14-87 (825)
102 cd06565 GH20_GcnA-like Glycosy 69.6 78 0.0017 32.9 12.7 57 22-82 15-79 (301)
103 PRK12677 xylose isomerase; Pro 69.5 40 0.00087 36.5 10.9 92 23-134 30-126 (384)
104 cd06599 GH31_glycosidase_Aec37 68.7 15 0.00033 38.4 7.3 66 23-88 28-98 (317)
105 PF03659 Glyco_hydro_71: Glyco 67.7 28 0.00061 37.8 9.2 53 22-83 15-67 (386)
106 COG3589 Uncharacterized conser 67.3 9.5 0.0002 40.5 5.3 73 11-90 3-76 (360)
107 cd06589 GH31 The enzymes of gl 66.9 13 0.00028 37.8 6.2 65 22-87 22-90 (265)
108 PRK09525 lacZ beta-D-galactosi 66.6 16 0.00035 44.5 7.8 97 384-492 119-229 (1027)
109 PRK14510 putative bifunctional 66.5 9.9 0.00021 47.1 6.1 55 28-82 191-266 (1221)
110 PRK14507 putative bifunctional 66.4 14 0.0003 47.1 7.3 61 22-85 756-829 (1693)
111 PRK14511 maltooligosyl trehalo 66.4 15 0.00032 43.9 7.2 63 21-86 17-92 (879)
112 cd06547 GH85_ENGase Endo-beta- 66.2 22 0.00047 37.9 7.9 113 40-181 32-149 (339)
113 cd06598 GH31_transferase_CtsZ 66.1 14 0.00031 38.6 6.5 67 22-88 22-95 (317)
114 TIGR02103 pullul_strch alpha-1 66.0 11 0.00024 45.1 6.1 20 63-82 404-423 (898)
115 cd06564 GH20_DspB_LnbB-like Gl 66.0 51 0.0011 34.6 10.6 148 15-179 10-199 (326)
116 cd06600 GH31_MGAM-like This fa 65.5 14 0.00031 38.7 6.3 67 22-89 22-90 (317)
117 TIGR02102 pullulan_Gpos pullul 65.3 12 0.00026 45.9 6.3 22 62-83 554-575 (1111)
118 cd06603 GH31_GANC_GANAB_alpha 64.9 16 0.00034 38.7 6.5 68 22-90 22-91 (339)
119 smart00518 AP2Ec AP endonuclea 63.6 1.1E+02 0.0023 30.7 12.1 73 7-81 25-102 (273)
120 PF13199 Glyco_hydro_66: Glyco 63.0 17 0.00036 41.4 6.6 83 23-105 117-214 (559)
121 PRK14582 pgaB outer membrane N 62.8 30 0.00065 40.3 8.7 127 7-151 312-468 (671)
122 PF02055 Glyco_hydro_30: O-Gly 62.8 39 0.00085 37.9 9.4 160 8-183 75-281 (496)
123 PLN02877 alpha-amylase/limit d 62.5 15 0.00032 44.4 6.3 20 63-82 466-485 (970)
124 cd02742 GH20_hexosaminidase Be 62.0 67 0.0015 33.4 10.5 59 21-82 13-91 (303)
125 PRK03705 glycogen debranching 61.1 15 0.00032 42.7 5.8 54 29-82 184-261 (658)
126 cd06568 GH20_SpHex_like A subg 61.0 96 0.0021 32.8 11.6 62 21-82 15-94 (329)
127 COG2159 Predicted metal-depend 60.7 1.4E+02 0.003 31.1 12.5 68 10-86 99-167 (293)
128 cd06563 GH20_chitobiase-like T 60.6 83 0.0018 33.5 11.1 62 21-82 15-105 (357)
129 TIGR00677 fadh2_euk methylenet 60.5 31 0.00067 35.7 7.6 109 10-133 130-251 (281)
130 PF14587 Glyco_hydr_30_2: O-Gl 60.5 63 0.0014 35.1 10.1 137 34-185 57-229 (384)
131 COG3623 SgaU Putative L-xylulo 60.3 47 0.001 33.9 8.4 90 23-134 17-108 (287)
132 cd06601 GH31_lyase_GLase GLase 58.9 26 0.00056 37.2 6.9 72 16-88 13-89 (332)
133 TIGR02455 TreS_stutzeri trehal 58.1 25 0.00053 40.7 6.8 74 23-100 77-175 (688)
134 PRK09856 fructoselysine 3-epim 57.4 19 0.00041 36.1 5.4 59 24-83 90-149 (275)
135 PLN02784 alpha-amylase 57.1 29 0.00063 41.4 7.3 57 27-83 524-588 (894)
136 PF14307 Glyco_tran_WbsX: Glyc 54.9 1.2E+02 0.0026 32.2 11.1 39 2-43 154-194 (345)
137 cd06604 GH31_glucosidase_II_Ma 54.7 31 0.00066 36.4 6.6 66 22-88 22-89 (339)
138 smart00481 POLIIIAc DNA polyme 54.6 39 0.00085 26.5 5.7 45 25-82 16-60 (67)
139 PF01791 DeoC: DeoC/LacD famil 54.1 4 8.6E-05 40.7 -0.2 57 27-88 79-135 (236)
140 PRK12331 oxaloacetate decarbox 53.4 39 0.00085 37.4 7.3 59 16-90 88-146 (448)
141 PRK09267 flavodoxin FldA; Vali 52.9 91 0.002 29.1 8.9 73 7-82 47-119 (169)
142 PF02449 Glyco_hydro_42: Beta- 52.8 63 0.0014 34.4 8.7 146 157-328 211-371 (374)
143 COG1306 Uncharacterized conser 52.8 32 0.00069 36.2 6.0 60 23-82 76-143 (400)
144 PF01055 Glyco_hydro_31: Glyco 52.4 33 0.00071 37.3 6.5 68 22-90 41-110 (441)
145 COG5309 Exo-beta-1,3-glucanase 51.2 1.4E+02 0.0031 31.0 10.3 115 23-185 62-181 (305)
146 PRK13210 putative L-xylulose 5 50.2 31 0.00068 34.7 5.6 59 24-83 94-153 (284)
147 PRK12858 tagatose 1,6-diphosph 49.1 24 0.00052 37.7 4.7 66 15-83 98-163 (340)
148 PF04914 DltD_C: DltD C-termin 49.0 13 0.00029 34.2 2.4 28 63-91 36-63 (130)
149 PRK10658 putative alpha-glucos 48.8 2.6E+02 0.0057 32.6 13.3 68 21-88 280-350 (665)
150 COG0366 AmyA Glycosidases [Car 48.7 33 0.00071 37.3 5.8 55 28-82 33-96 (505)
151 PRK09875 putative hydrolase; P 48.2 1E+02 0.0022 32.1 9.1 63 23-102 33-95 (292)
152 cd00311 TIM Triosephosphate is 47.5 40 0.00087 34.2 5.8 49 30-84 77-125 (242)
153 PF08306 Glyco_hydro_98M: Glyc 47.0 19 0.0004 38.1 3.4 90 9-123 103-199 (324)
154 PRK09997 hydroxypyruvate isome 46.6 36 0.00077 34.1 5.3 60 24-83 85-144 (258)
155 cd06562 GH20_HexA_HexB-like Be 45.4 4E+02 0.0087 28.3 13.7 62 21-82 15-89 (348)
156 KOG1065 Maltase glucoamylase a 45.1 33 0.00072 40.4 5.3 71 16-89 300-377 (805)
157 PF13380 CoA_binding_2: CoA bi 44.9 54 0.0012 29.1 5.7 44 21-80 63-106 (116)
158 TIGR02635 RhaI_grampos L-rhamn 44.7 3.7E+02 0.0079 29.3 12.9 92 23-143 39-133 (378)
159 cd07937 DRE_TIM_PC_TC_5S Pyruv 44.4 72 0.0016 32.7 7.2 50 21-82 88-137 (275)
160 cd06570 GH20_chitobiase-like_1 44.0 4.1E+02 0.0088 27.9 13.2 62 21-82 15-87 (311)
161 PF12876 Cellulase-like: Sugar 43.7 27 0.00058 29.4 3.3 43 137-179 6-61 (88)
162 cd01299 Met_dep_hydrolase_A Me 43.7 59 0.0013 33.6 6.6 59 23-82 119-179 (342)
163 cd06597 GH31_transferase_CtsY 43.3 59 0.0013 34.5 6.6 73 16-88 13-110 (340)
164 PRK08227 autoinducer 2 aldolas 42.0 61 0.0013 33.4 6.2 47 29-81 99-145 (264)
165 COG1523 PulA Type II secretory 41.8 40 0.00087 39.4 5.4 54 29-82 205-284 (697)
166 PRK13398 3-deoxy-7-phosphohept 41.6 1.4E+02 0.0031 30.7 8.8 73 4-83 23-98 (266)
167 TIGR03234 OH-pyruv-isom hydrox 40.9 46 0.001 33.0 5.1 60 24-83 84-143 (254)
168 PRK10422 lipopolysaccharide co 39.1 69 0.0015 33.6 6.3 73 10-85 187-273 (352)
169 cd06594 GH31_glucosidase_YihQ 38.1 1.2E+02 0.0026 31.9 7.8 67 22-88 21-96 (317)
170 PRK14040 oxaloacetate decarbox 37.8 84 0.0018 36.1 7.1 55 16-82 89-143 (593)
171 PRK00042 tpiA triosephosphate 37.5 73 0.0016 32.5 5.9 50 29-84 78-127 (250)
172 PRK15492 triosephosphate isome 37.2 75 0.0016 32.7 6.0 49 30-84 87-135 (260)
173 TIGR00433 bioB biotin syntheta 37.0 53 0.0011 33.5 4.9 52 27-82 123-177 (296)
174 cd04882 ACT_Bt0572_2 C-termina 37.0 61 0.0013 24.6 4.2 55 23-79 10-64 (65)
175 PF11324 DUF3126: Protein of u 36.2 83 0.0018 25.6 4.8 23 405-436 24-46 (63)
176 TIGR02690 resist_ArsH arsenica 35.9 4.6E+02 0.01 26.2 12.7 148 8-170 28-195 (219)
177 COG1082 IolE Sugar phosphate i 35.5 4.4E+02 0.0096 25.9 13.3 52 22-82 13-64 (274)
178 TIGR00542 hxl6Piso_put hexulos 35.3 75 0.0016 32.1 5.7 58 25-83 95-153 (279)
179 PLN02763 hydrolase, hydrolyzin 34.5 1.1E+02 0.0023 37.4 7.4 74 16-90 190-268 (978)
180 PF01075 Glyco_transf_9: Glyco 34.5 32 0.0007 33.7 2.8 75 8-85 107-194 (247)
181 PF10566 Glyco_hydro_97: Glyco 34.4 1.1E+02 0.0025 31.6 6.8 60 22-82 30-92 (273)
182 COG2360 Aat Leu/Phe-tRNA-prote 34.3 50 0.0011 33.0 4.0 101 54-166 74-205 (221)
183 PLN02561 triosephosphate isome 34.3 86 0.0019 32.1 5.8 49 30-84 81-129 (253)
184 PRK01060 endonuclease IV; Prov 34.2 4.9E+02 0.011 26.0 12.3 63 21-84 44-111 (281)
185 PRK08673 3-deoxy-7-phosphohept 33.3 1.5E+02 0.0032 31.7 7.6 74 3-83 88-164 (335)
186 PF14307 Glyco_tran_WbsX: Glyc 33.2 6.1E+02 0.013 26.8 13.7 135 22-181 56-196 (345)
187 TIGR02201 heptsyl_trn_III lipo 33.1 83 0.0018 32.7 5.7 75 11-85 186-271 (344)
188 TIGR00419 tim triosephosphate 33.1 86 0.0019 31.1 5.5 44 30-83 74-117 (205)
189 PTZ00333 triosephosphate isome 32.0 99 0.0021 31.7 5.9 49 30-84 82-130 (255)
190 COG1735 Php Predicted metal-de 31.8 1.9E+02 0.0042 30.6 7.9 120 27-181 51-171 (316)
191 PRK14567 triosephosphate isome 31.8 1E+02 0.0023 31.6 5.9 49 30-84 78-126 (253)
192 PRK14566 triosephosphate isome 31.8 1E+02 0.0023 31.7 6.0 49 30-84 88-136 (260)
193 PRK08645 bifunctional homocyst 31.7 1.8E+02 0.004 33.4 8.6 110 7-132 461-578 (612)
194 TIGR00587 nfo apurinic endonuc 31.6 4.3E+02 0.0094 26.8 10.5 83 27-134 14-100 (274)
195 PF00728 Glyco_hydro_20: Glyco 31.5 1.1E+02 0.0023 32.0 6.2 62 21-82 15-92 (351)
196 PRK00870 haloalkane dehalogena 31.0 1.6E+02 0.0035 29.6 7.3 81 6-99 46-130 (302)
197 KOG2024 Beta-Glucuronidase GUS 30.7 54 0.0012 33.9 3.6 47 371-417 68-127 (297)
198 TIGR02193 heptsyl_trn_I lipopo 30.2 1.1E+02 0.0024 31.3 6.1 74 8-85 181-265 (319)
199 cd03789 GT1_LPS_heptosyltransf 30.1 76 0.0016 31.9 4.7 77 10-89 125-213 (279)
200 cd06416 GH25_Lys1-like Lys-1 i 30.0 3.6E+02 0.0078 25.9 9.2 117 28-183 13-133 (196)
201 PF02228 Gag_p19: Major core p 29.9 26 0.00055 29.7 1.0 39 22-77 20-58 (92)
202 PRK13209 L-xylulose 5-phosphat 29.8 94 0.002 31.3 5.3 57 25-83 100-158 (283)
203 cd00019 AP2Ec AP endonuclease 29.7 60 0.0013 32.7 3.9 60 24-84 85-144 (279)
204 PLN03231 putative alpha-galact 29.7 4.5E+02 0.0097 28.4 10.5 147 21-182 15-216 (357)
205 cd07944 DRE_TIM_HOA_like 4-hyd 29.5 1.4E+02 0.0029 30.6 6.4 144 18-183 14-160 (266)
206 cd06416 GH25_Lys1-like Lys-1 i 29.5 1.8E+02 0.0039 27.9 7.0 87 13-102 55-156 (196)
207 cd07393 MPP_DR1119 Deinococcus 29.5 4.9E+02 0.011 25.6 10.3 115 6-133 41-160 (232)
208 PF14701 hDGE_amylase: glucano 29.2 1E+02 0.0022 34.1 5.6 97 15-118 11-126 (423)
209 PTZ00372 endonuclease 4-like p 29.0 8.2E+02 0.018 27.0 13.6 89 27-146 144-238 (413)
210 cd06545 GH18_3CO4_chitinase Th 28.9 2.3E+02 0.005 28.4 7.9 110 32-170 17-130 (253)
211 TIGR03128 RuMP_HxlA 3-hexulose 28.8 1.3E+02 0.0028 28.9 5.9 41 29-82 68-108 (206)
212 PTZ00372 endonuclease 4-like p 28.6 8.3E+02 0.018 27.0 13.1 81 4-85 153-241 (413)
213 PLN02284 glutamine synthetase 28.4 1.9E+02 0.0042 30.9 7.6 61 30-96 176-248 (354)
214 PRK11572 copper homeostasis pr 28.2 78 0.0017 32.4 4.3 62 10-81 59-120 (248)
215 TIGR00676 fadh2 5,10-methylene 28.0 3.2E+02 0.007 27.9 8.9 109 9-133 125-247 (272)
216 cd00537 MTHFR Methylenetetrahy 27.9 2.1E+02 0.0046 29.0 7.5 92 27-133 150-250 (274)
217 PRK12330 oxaloacetate decarbox 27.8 1.5E+02 0.0033 33.4 6.8 54 17-82 90-143 (499)
218 PLN02231 alanine transaminase 27.7 2E+02 0.0044 32.5 7.9 59 20-82 252-310 (534)
219 TIGR01108 oadA oxaloacetate de 27.6 1.5E+02 0.0033 34.0 7.0 54 17-82 84-137 (582)
220 PF01120 Alpha_L_fucos: Alpha- 27.2 3.6E+02 0.0078 28.6 9.4 143 21-179 91-242 (346)
221 KOG0470 1,4-alpha-glucan branc 27.2 66 0.0014 37.6 3.9 57 27-83 258-331 (757)
222 PRK09250 fructose-bisphosphate 27.2 80 0.0017 33.9 4.3 48 29-82 151-198 (348)
223 PRK10426 alpha-glucosidase; Pr 27.1 1.5E+02 0.0032 34.4 6.9 67 23-89 220-295 (635)
224 PLN03036 glutamine synthetase; 27.1 2.1E+02 0.0046 31.6 7.7 67 24-96 230-308 (432)
225 KOG0259 Tyrosine aminotransfer 27.0 72 0.0016 34.8 3.9 59 20-82 179-238 (447)
226 TIGR01698 PUNP purine nucleoti 27.0 1E+02 0.0022 31.3 4.9 41 3-43 47-88 (237)
227 cd06418 GH25_BacA-like BacA is 26.6 2.2E+02 0.0048 28.3 7.1 89 22-133 50-139 (212)
228 COG3684 LacD Tagatose-1,6-bisp 26.5 50 0.0011 34.1 2.5 62 19-83 106-167 (306)
229 PRK10964 ADP-heptose:LPS hepto 26.3 1.2E+02 0.0025 31.4 5.3 76 7-85 178-264 (322)
230 PRK09282 pyruvate carboxylase 26.1 1.5E+02 0.0033 34.1 6.6 55 16-82 88-142 (592)
231 PF04909 Amidohydro_2: Amidohy 25.6 2.1E+02 0.0046 27.8 6.9 66 10-84 72-138 (273)
232 PF00120 Gln-synt_C: Glutamine 25.5 1.9E+02 0.0041 29.3 6.6 61 23-88 68-140 (259)
233 COG1891 Uncharacterized protei 25.3 28 0.00061 33.9 0.5 64 11-82 118-186 (235)
234 COG0149 TpiA Triosephosphate i 25.3 1.5E+02 0.0033 30.4 5.7 49 30-84 81-129 (251)
235 PRK06852 aldolase; Validated 25.2 1.6E+02 0.0035 31.1 6.1 78 30-131 121-204 (304)
236 cd03334 Fab1_TCP TCP-1 like do 25.1 3.4E+02 0.0073 27.6 8.4 60 7-83 87-159 (261)
237 KOG1412 Aspartate aminotransfe 25.0 1.6E+02 0.0035 31.4 6.0 60 21-93 130-191 (410)
238 COG3572 GshA Gamma-glutamylcys 24.9 2E+02 0.0044 31.5 6.8 92 50-165 93-197 (456)
239 PF06832 BiPBP_C: Penicillin-B 24.6 1.3E+02 0.0028 25.1 4.4 67 384-463 18-84 (89)
240 PRK13125 trpA tryptophan synth 24.6 1.6E+02 0.0036 29.5 5.9 44 28-83 92-136 (244)
241 PF00121 TIM: Triosephosphate 24.2 52 0.0011 33.4 2.2 49 30-84 77-125 (244)
242 PLN02389 biotin synthase 24.1 1E+02 0.0022 33.4 4.5 50 27-79 178-229 (379)
243 PRK08195 4-hyroxy-2-oxovalerat 24.0 1.3E+02 0.0028 32.0 5.2 43 28-82 92-134 (337)
244 cd07944 DRE_TIM_HOA_like 4-hyd 23.9 1.2E+02 0.0025 31.1 4.7 44 27-82 85-128 (266)
245 TIGR03700 mena_SCO4494 putativ 23.8 63 0.0014 34.3 2.9 51 27-80 150-205 (351)
246 TIGR02195 heptsyl_trn_II lipop 23.5 1.7E+02 0.0037 30.2 6.0 80 6-85 173-262 (334)
247 TIGR03551 F420_cofH 7,8-dideme 23.5 69 0.0015 33.8 3.1 49 27-79 141-195 (343)
248 KOG4039 Serine/threonine kinas 23.0 2E+02 0.0042 28.6 5.7 77 18-102 103-184 (238)
249 PRK14565 triosephosphate isome 22.7 1.9E+02 0.0041 29.4 5.9 49 30-84 78-126 (237)
250 cd00958 DhnA Class I fructose- 22.7 1.4E+02 0.0029 29.5 4.8 63 14-82 65-128 (235)
251 cd04726 KGPDC_HPS 3-Keto-L-gul 22.6 2.3E+02 0.0049 27.0 6.3 45 29-86 69-114 (202)
252 TIGR03217 4OH_2_O_val_ald 4-hy 22.6 1.5E+02 0.0033 31.5 5.4 44 27-82 90-133 (333)
253 cd06167 LabA_like LabA_like pr 22.2 1.8E+02 0.004 26.1 5.3 58 24-82 52-129 (149)
254 cd06525 GH25_Lyc-like Lyc mura 22.1 68 0.0015 30.6 2.5 85 13-102 54-146 (184)
255 TIGR01752 flav_long flavodoxin 22.0 4E+02 0.0086 24.9 7.7 117 8-131 46-166 (167)
256 PF03644 Glyco_hydro_85: Glyco 22.0 2.4E+02 0.0052 29.7 6.7 113 40-181 28-144 (311)
257 cd07381 MPP_CapA CapA and rela 22.0 7.6E+02 0.016 24.2 12.2 132 27-178 67-212 (239)
258 cd04883 ACT_AcuB C-terminal AC 21.8 2.4E+02 0.0052 21.8 5.3 54 23-80 12-69 (72)
259 PLN02429 triosephosphate isome 21.7 2E+02 0.0044 30.5 6.0 45 30-84 140-188 (315)
260 COG1324 CutA Uncharacterized p 21.5 1.4E+02 0.0031 26.6 4.1 46 108-167 57-102 (104)
261 PF02126 PTE: Phosphotriestera 21.4 1.2E+02 0.0026 31.9 4.4 59 27-102 41-99 (308)
262 PLN02607 1-aminocyclopropane-1 21.4 3.1E+02 0.0067 30.1 7.7 60 19-82 180-239 (447)
263 PF07905 PucR: Purine cataboli 20.9 5E+02 0.011 23.0 7.8 66 5-83 41-106 (123)
264 PRK09485 mmuM homocysteine met 20.7 5.5E+02 0.012 26.7 9.1 36 115-169 268-303 (304)
265 PRK10076 pyruvate formate lyas 20.7 5.5E+02 0.012 25.4 8.6 124 23-178 53-211 (213)
266 PF07521 RMMBL: RNA-metabolisi 20.7 87 0.0019 23.0 2.3 27 56-82 11-37 (43)
267 PF07755 DUF1611: Protein of u 20.7 63 0.0014 34.0 2.0 57 9-80 35-91 (301)
268 PRK06703 flavodoxin; Provision 20.6 6.1E+02 0.013 22.9 8.5 96 8-132 50-148 (151)
269 KOG0471 Alpha-amylase [Carbohy 20.5 1.7E+02 0.0036 33.3 5.5 63 27-89 43-114 (545)
270 PRK12581 oxaloacetate decarbox 20.4 4.3E+02 0.0093 29.6 8.5 60 16-91 97-156 (468)
271 PRK14042 pyruvate carboxylase 20.4 2.5E+02 0.0055 32.4 7.0 53 18-82 90-142 (596)
272 PLN02450 1-aminocyclopropane-1 20.3 2.3E+02 0.0049 31.3 6.5 59 20-82 172-230 (468)
273 cd07943 DRE_TIM_HOA 4-hydroxy- 20.3 1.6E+02 0.0035 29.8 4.9 43 28-82 89-131 (263)
274 PRK07534 methionine synthase I 20.3 3.9E+02 0.0085 28.4 8.0 56 92-170 239-295 (336)
275 cd04740 DHOD_1B_like Dihydroor 20.2 3.5E+02 0.0075 27.7 7.4 63 22-85 100-163 (296)
276 PRK07094 biotin synthase; Prov 20.2 88 0.0019 32.5 3.0 50 27-79 129-181 (323)
277 TIGR01210 conserved hypothetic 20.1 1.9E+02 0.0042 30.2 5.6 76 22-102 153-234 (313)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.1e-121 Score=1024.31 Aligned_cols=459 Identities=30% Similarity=0.513 Sum_probs=394.5
Q ss_pred CceecCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEE
Q 009269 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (538)
Q Consensus 1 ~f~~dG~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vi 80 (538)
+|+|||+|++|+||++||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||.+||++|+++||+||
T Consensus 36 ~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvi 115 (840)
T PLN03059 36 AFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVH 115 (840)
T ss_pred EEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhc--cccccCCCCEEEEccccccCCC----
Q 009269 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA--PLLYDIGGPIVMVQIENEFGSY---- 154 (538)
Q Consensus 81 lrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~--~~~~~~gGpII~~QVENEyg~~---- 154 (538)
|||||||||||++||+|.||++ .|+|++|++||.|+++|++|+++|+++++ ++++++||||||+|||||||+|
T Consensus 116 lRpGPYIcAEw~~GGlP~WL~~-~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~ 194 (840)
T PLN03059 116 LRIGPYICAEWNFGGFPVWLKY-VPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEI 194 (840)
T ss_pred ecCCcceeeeecCCCCchhhhc-CCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceeccc
Confidence 9999999999999999999998 69999999999999999999999999995 7899999999999999999998
Q ss_pred -CCcHHHHHHHHHHHHHhcCCceEEEEecCCCccccccCccCCCeeeeeecCCCCCCCchhHHHHHHhcCCCCCCCcccc
Q 009269 155 -GDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSE 233 (538)
Q Consensus 155 -~~~~~y~~~L~~~~~~~~G~~v~l~t~dg~~~~~~~~g~l~~~~v~~~~~f~~~~~~~~~f~~~~~~~~~~~~P~~~~E 233 (538)
++|++||+||++++++ .|++|||||||+.. .++ +++.|+| + .....|.. ..+.+|+|++|
T Consensus 195 ~~~d~~Yl~~l~~~~~~-~Gi~VPl~t~dg~~-------~~~--~v~~t~N-g---~~~~~f~~-----~~~~~P~m~tE 255 (840)
T PLN03059 195 GAPGKAYTKWAADMAVK-LGTGVPWVMCKQED-------APD--PVIDTCN-G---FYCENFKP-----NKDYKPKMWTE 255 (840)
T ss_pred CcchHHHHHHHHHHHHH-cCCCcceEECCCCC-------CCc--cceecCC-C---chhhhccc-----CCCCCCcEEec
Confidence 6899999999999999 79999999999763 233 3888877 2 12223322 11236999999
Q ss_pred cccccccccCCCCccCChHHHHHHHHHHHHcCCc-eEEEeecCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCCccccCCC
Q 009269 234 FYTGWLTHWGEKIAKTDADFTASYLEKILSQNGS-AVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGD 312 (538)
Q Consensus 234 ~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l~~~~s-~n~YM~hGGTNfG~~~Ga~~~~~~~~~~p~~TSYDY~APi~E~G~ 312 (538)
||+|||+|||++++.+++++++..++++++.++| +||||||||||||||+||+. ++|||||||||+|+|+
T Consensus 256 ~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~---------~~TSYDYdAPL~E~G~ 326 (840)
T PLN03059 256 AWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPF---------IATSYDYDAPLDEYGL 326 (840)
T ss_pred cCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCc---------cccccccCCccccccC
Confidence 9999999999999999999999999999999999 69999999999999999873 6899999999999999
Q ss_pred CChHHHHHHHHHHHhhCCC--CCCCCCC-CC-----------c--------ccCcc---ceecc----------------
Q 009269 313 VDNPKFKAIRRVVEKFSPA--SLPSVLP-DN-----------E--------KAGFG---PIQLQ---------------- 351 (538)
Q Consensus 313 ~t~~Ky~~lr~~i~~~~~~--~~p~~P~-~~-----------~--------~~~yg---~v~l~---------------- 351 (538)
+|+|||.+||++++.+... .++..|+ .. + ++.|+ ++.++
T Consensus 327 ~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsil 406 (840)
T PLN03059 327 PREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSIL 406 (840)
T ss_pred cchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccCccceeec
Confidence 9988999999999987322 2332222 11 2 45666 66666
Q ss_pred --cccchhhhhhc------c--CCC----------Cceec---CCCCchhhc-------CCcccEEEEEeeeCCCCCCc-
Q 009269 352 --KTALLFDLLDV------L--DPA----------DVVES---ENPLSMESV-------GQMFGFLLYVSEFGGKDYGS- 400 (538)
Q Consensus 352 --~~~~L~~~l~~------l--~~~----------~~~~s---~~P~smE~l-------gQ~~GyvlY~t~i~~~~~~~- 400 (538)
...+||++++. + .+. +++.+ +.|++||+| +|.+||+||+|.|.......
T Consensus 407 pd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~ 486 (840)
T PLN03059 407 PDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGF 486 (840)
T ss_pred ccccceeeeccccccccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccc
Confidence 57788998885 2 111 01133 349999999 99999999999998654332
Q ss_pred -------ccccCCccceEEEEeCCCcCCCCCCCeeEEEEEeecc-cceeecc--cCCCCCcEEEEEEEecCccccCCCCC
Q 009269 401 -------SLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSN-RALSLPN--FRCGSNISLFVLVENMGRVNYGPYMF 470 (538)
Q Consensus 401 -------~L~~~~v~Dra~Vfvdg~~~~~~~~~~~vg~l~r~~~-~~~~l~~--~~~~~~~~L~ILVEN~GRvNyG~~~~ 470 (538)
+|++.+++|||+||||| +++|++.+... ..++++. ....+.++|+||||||||+|||+.|.
T Consensus 487 ~~~~~~~~L~v~~~~d~~~vFVNg---------~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le 557 (840)
T PLN03059 487 LKTGQYPVLTIFSAGHALHVFING---------QLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFE 557 (840)
T ss_pred cccCCCceEEEcccCcEEEEEECC---------EEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccc
Confidence 48899999999999999 89999987553 3455541 11124679999999999999999995
Q ss_pred -CCCCcccceeeCC-----EEecCeE-EEeecCC
Q 009269 471 -DEKGILSSVYLGG-----KVLRGWK-MIPVPFH 497 (538)
Q Consensus 471 -d~KGi~g~V~l~~-----~~L~~W~-~~~lpl~ 497 (538)
++|||+|+|+|++ +.|++|+ +|+|+|+
T Consensus 558 ~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~ 591 (840)
T PLN03059 558 TWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLK 591 (840)
T ss_pred cccccccccEEEecccCCceecccCccccccCcc
Confidence 6999999999998 8999999 9999997
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-102 Score=841.38 Aligned_cols=474 Identities=34% Similarity=0.543 Sum_probs=406.9
Q ss_pred CceecCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEE
Q 009269 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (538)
Q Consensus 1 ~f~~dG~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vi 80 (538)
+|++||+|++++||++||+|++|++|+++|+|+|++|+|+|+||||||.|||+||+|||+|+.||.+||++|+++||+||
T Consensus 26 ~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~ 105 (649)
T KOG0496|consen 26 SLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVI 105 (649)
T ss_pred ceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHH
Q 009269 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEY 160 (538)
Q Consensus 81 lrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y 160 (538)
||+||||||||++||+|.||.. .|++.+|++|+.|+++|++|+++|++++++++++|||||||+||||||| .|
T Consensus 106 LRiGPyIcaEw~~GG~P~wL~~-~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG------~~ 178 (649)
T KOG0496|consen 106 LRIGPYICAEWNFGGLPWWLRN-VPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG------NY 178 (649)
T ss_pred ecCCCeEEecccCCCcchhhhh-CCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh------HH
Confidence 9999999999999999977766 7999999999999999999999999999999999999999999999999 68
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCccccccCccCCCeeeeeecCCCCCCCchhHHHHHHhcCCCCCCCccccccccccc
Q 009269 161 LHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLT 240 (538)
Q Consensus 161 ~~~L~~~~~~~~G~~v~l~t~dg~~~~~~~~g~l~~~~v~~~~~f~~~~~~~~~f~~~~~~~~~~~~P~~~~E~~~Gwf~ 240 (538)
.+++.+..+++++-++.|+++++.....+.|+.....+.. +|.+++-..+..| ++.. .+++|.|++|+|+|||+
T Consensus 179 ~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~--in~cng~~c~~~f--~~pn--~~~kP~~wtE~wtgwf~ 252 (649)
T KOG0496|consen 179 LRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPG--INTCNGFYCGDTF--KRPN--SPNKPLVWTENWTGWFT 252 (649)
T ss_pred HHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCcc--ccccCCccchhhh--ccCC--CCCCCceecccccchhh
Confidence 9999999999999999999999877667778776533332 3433332232333 2222 34679999999999999
Q ss_pred ccCCCCccCChHHHHHHHHHHHHcC-CceEEEeecCCCCCCCCCC---CCCCCC------------CCCCCCCCcCcCCC
Q 009269 241 HWGEKIAKTDADFTASYLEKILSQN-GSAVLYMAHGGTNFGFYNG---ANTGNT------------ESDYQPDLTSYDYD 304 (538)
Q Consensus 241 ~WG~~~~~~~~~~~~~~l~~~l~~~-~s~n~YM~hGGTNfG~~~G---a~~~~~------------~~~~~p~~TSYDY~ 304 (538)
+||++++.+++++++..+..+++.+ +++||||+|||||||+||| ++.... .+.+.+.+|||||+
T Consensus 253 ~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~dgl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 253 HWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLDGLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccchhhcCCCccccccchhhhhhc
Confidence 9999999999999999999999987 7789999999999999999 653111 13477899999999
Q ss_pred CccccCCCCChHHHHHHH----HHHHhhCCCCCCCCCCCCcccCccceecccccchhhhhhccCCCC--ceecCCCCchh
Q 009269 305 APIKESGDVDNPKFKAIR----RVVEKFSPASLPSVLPDNEKAGFGPIQLQKTALLFDLLDVLDPAD--VVESENPLSME 378 (538)
Q Consensus 305 APi~E~G~~t~~Ky~~lr----~~i~~~~~~~~p~~P~~~~~~~yg~v~l~~~~~L~~~l~~l~~~~--~~~s~~P~smE 378 (538)
||+.|+|+++-+||-++| .+|+.+.+.+.+++|-+.++..|+++++.-.-+++..+..+++.. .+.+..|+++|
T Consensus 333 ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~~~~~~e~~~~~ 412 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQWISFTEPIPSE 412 (649)
T ss_pred CccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccccccccCCCccc
Confidence 999999996667999999 889999999999999999999999999887777766654443322 35788999999
Q ss_pred hcCCcccEEEEEeeeCCCCCC-cccccC-CccceEEEEeCCCcCCCCCCCeeEEEEEeecc-cceee--cccCCCCCcEE
Q 009269 379 SVGQMFGFLLYVSEFGGKDYG-SSLLIS-KVHDRAQVFISCPTEDNSGRPTYVGTIERWSN-RALSL--PNFRCGSNISL 453 (538)
Q Consensus 379 ~lgQ~~GyvlY~t~i~~~~~~-~~L~~~-~v~Dra~Vfvdg~~~~~~~~~~~vg~l~r~~~-~~~~l--~~~~~~~~~~L 453 (538)
..+|.+||+||+|.++.+.+. +.|+|+ .++|++|||||| +++|++.+... ..+.+ +..-..+.++|
T Consensus 413 ~~~~~~~~ll~~~~~t~d~sd~t~~~i~ls~g~~~hVfvNg---------~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l 483 (649)
T KOG0496|consen 413 AVGQSFGGLLEQTNLTKDKSDTTSLKIPLSLGHALHVFVNG---------EFAGSLHGNNEKIKLNLSQPVGLKAGENKL 483 (649)
T ss_pred cccCcceEEEEEEeeccccCCCceEeecccccceEEEEECC---------EEeeeEeccccceeEEeecccccccCcceE
Confidence 999999999999988766443 568888 999999999999 89999988542 22222 22112346899
Q ss_pred EEEEEecCccccCCCCCCCCCcccceeeCCEEecCeEEEeecC
Q 009269 454 FVLVENMGRVNYGPYMFDEKGILSSVYLGGKVLRGWKMIPVPF 496 (538)
Q Consensus 454 ~ILVEN~GRvNyG~~~~d~KGi~g~V~l~~~~L~~W~~~~lpl 496 (538)
+|||||+||+|||...+++|||+|+|+|++..+..|++.++.+
T Consensus 484 ~iL~~~~G~~n~G~~e~~~~Gi~g~v~l~g~~~l~~~~w~~~~ 526 (649)
T KOG0496|consen 484 ALLSENVGLPNYGHFENDFKGILGPVYLNGLIDLTWTKWPYKV 526 (649)
T ss_pred EEEEEecCCCCcCcccccccccccceEEeeeeccceeecceec
Confidence 9999999999999666789999999999999888887766664
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=9.7e-98 Score=770.98 Aligned_cols=318 Identities=50% Similarity=0.942 Sum_probs=256.4
Q ss_pred CceecCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEE
Q 009269 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (538)
Q Consensus 1 ~f~~dG~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vi 80 (538)
+|+|||||++|+|||+||||+|+++|+|+|+||||+|||||+|||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHH
Q 009269 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEY 160 (538)
Q Consensus 81 lrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y 160 (538)
|||||||||||++||+|.||++ .+.+++|++||.|+++|++|+++|+++++++|+++||||||+|||||||+++++++|
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~-~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~~~~~Y 159 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLR-KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYGTDRAY 159 (319)
T ss_dssp EEEES---TTBGGGG--GGGGG-STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTSS-HHH
T ss_pred ecccceecccccchhhhhhhhc-cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCcccHhH
Confidence 9999999999999999999999 579999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhcCCc-eEEEEecCCCccccccCccCCCeeeeeecCCCCCCCchhHHHHHHhcCCCCCCCcccccccccc
Q 009269 161 LHHLVTLARAHLGKD-IILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWL 239 (538)
Q Consensus 161 ~~~L~~~~~~~~G~~-v~l~t~dg~~~~~~~~g~l~~~~v~~~~~f~~~~~~~~~f~~~~~~~~~~~~P~~~~E~~~Gwf 239 (538)
|+.|++++++ .|++ ++++|+|++......++.+++..++.+.+|+++.++...|..++.+++ ++|.|++|||+|||
T Consensus 160 ~~~l~~~~~~-~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~P~~~~E~~~Gwf 236 (319)
T PF01301_consen 160 MEALKDAYRD-WGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQP--NQPLMCTEFWGGWF 236 (319)
T ss_dssp HHHHHHHHHH-TT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHT--TS--EEEEEESS--
T ss_pred HHHHHHHHHH-hhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCC--CCCeEEEEeccccc
Confidence 9999999999 5776 889999998766677888888779999999987544456666666644 56999999999999
Q ss_pred cccCCCCccCChHHHHHHHHHHHHcCCceEEEeecCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCCccccCCCCChHHHH
Q 009269 240 THWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFK 319 (538)
Q Consensus 240 ~~WG~~~~~~~~~~~~~~l~~~l~~~~s~n~YM~hGGTNfG~~~Ga~~~~~~~~~~p~~TSYDY~APi~E~G~~t~~Ky~ 319 (538)
++||++++.++++.++..++++++.++++||||+|||||||+|+|++... +|++|||||+|||+|+|++|+ ||.
T Consensus 237 ~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~-----~p~~TSYDY~ApI~E~G~~~~-Ky~ 310 (319)
T PF01301_consen 237 DHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYG-----QPDITSYDYDAPIDEYGQLTP-KYY 310 (319)
T ss_dssp -BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTT-----EEB-SB--TT-SB-TTS-B-H-HHH
T ss_pred cccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCC-----CCCcccCCcCCccCcCCCcCH-HHH
Confidence 99999999999999999999999999999999999999999999998542 789999999999999999995 999
Q ss_pred HHHHHHHhh
Q 009269 320 AIRRVVEKF 328 (538)
Q Consensus 320 ~lr~~i~~~ 328 (538)
+||+++++|
T Consensus 311 ~lr~l~~~~ 319 (319)
T PF01301_consen 311 ELRRLHQKY 319 (319)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHhcC
Confidence 999999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-43 Score=388.41 Aligned_cols=461 Identities=21% Similarity=0.215 Sum_probs=297.1
Q ss_pred CceecCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEE-cccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeE
Q 009269 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (538)
Q Consensus 1 ~f~~dG~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~V 79 (538)
.|++||+|++++||++||+|||++.|.|||++||++|+|+|++ |+.||.|||++|+|||+ .+|.. ||++|++.||+|
T Consensus 7 ~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~~~Gl~v 84 (673)
T COG1874 7 SFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAYKAGLYV 84 (673)
T ss_pred ceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHHhcCceE
Confidence 3789999999999999999999999999999999999999999 99999999999999999 68888 999999999999
Q ss_pred EeecCC-ceeeecCCCCCcccccccCCCceec---------CCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEcccc
Q 009269 80 MLRPGP-YICAEWDLGGFPAWLLAKKPALKLR---------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (538)
Q Consensus 80 ilrpGP-yi~aEw~~GG~P~Wl~~~~p~~~~R---------~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVEN 149 (538)
|||||| ..|.+|..++.|.||.. ++.-.+| .+++.|++++++ |+++|+++.+++|++||+|||+|
T Consensus 85 il~t~P~g~~P~Wl~~~~PeiL~~-~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~irer~~~~~~~v~~w~~dn 159 (673)
T COG1874 85 ILRTGPTGAPPAWLAKKYPEILAV-DENGRVRSDGARENICPVSPVYREYLDR----ILQQIRERLYGNGPAVITWQNDN 159 (673)
T ss_pred EEecCCCCCCchHHhcCChhheEe-cCCCcccCCCcccccccccHHHHHHHHH----HHHHHHHHHhccCCceeEEEccC
Confidence 999999 99999999999999987 4543333 357778888888 66667776688999999999999
Q ss_pred ccCCCC-----CcHHHHHHHHHHHHHhcCCceEEEEecCCCccccccCccCCCeeeeeec-CCCCCCCchhH-HHHHHhc
Q 009269 150 EFGSYG-----DDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVD-FSTGAEPWPIF-KLQKQFN 222 (538)
Q Consensus 150 Eyg~~~-----~~~~y~~~L~~~~~~~~G~~v~l~t~dg~~~~~~~~g~l~~~~v~~~~~-f~~~~~~~~~f-~~~~~~~ 222 (538)
|||++. |+..+..||++.+-. +.+.+......+.++++..-+.+.+.+ ++. ++.+.. -...+|.
T Consensus 160 eY~~~~~~~~~~~~~f~~wLk~~yg~-------l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e--~~~~~~~ld~~~f~ 230 (673)
T COG1874 160 EYGGHPCYCDYCQAAFRLWLKKGYGS-------LDNLNEAWGTSFWSHTYKDFDEIMSPNPFGE--LPLPGLYLDYRRFE 230 (673)
T ss_pred ccCCccccccccHHHHHHHHHhCcch-------HHhhhhhhhhhhcccccccHHhhcCCCCccc--cCCccchhhHhhhh
Confidence 999843 566677777766522 222222222233334333211221122 222 111111 0112221
Q ss_pred C-C-CCCCCcccccccccc-cccCCCCccCC-hHHHHHHHHHHHHcCCceEEEeecCCCCCC------CCCCCCCC-CCC
Q 009269 223 A-P-GKSPPLSSEFYTGWL-THWGEKIAKTD-ADFTASYLEKILSQNGSAVLYMAHGGTNFG------FYNGANTG-NTE 291 (538)
Q Consensus 223 ~-~-~~~P~~~~E~~~Gwf-~~WG~~~~~~~-~~~~~~~l~~~l~~~~s~n~YM~hGGTNfG------~~~Ga~~~-~~~ 291 (538)
. + -..+..+.|.+-+|| +.|..+....+ .+.-...+++.+....+-||||+|+|++|+ |.+|+.-. ...
T Consensus 231 ~e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~swdny~~~~~~~~~~~~~h~l~r~~~~~~~~~~ 310 (673)
T COG1874 231 SEQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASWDNYPAWHRGRDFTKFIHDLFRNGKQGQPFWL 310 (673)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhhhhhhhhccccchhhhhHHHHHhhccCCceee
Confidence 1 0 012556788888999 88887766555 555566677788777667999999999999 88888721 111
Q ss_pred CCCCCCCcCcCCCCccccCCC---CChHHHHHHHHHHHhhCCCCCCCCCCCCcccCccce--e-cccccchhhhhhccCC
Q 009269 292 SDYQPDLTSYDYDAPIKESGD---VDNPKFKAIRRVVEKFSPASLPSVLPDNEKAGFGPI--Q-LQKTALLFDLLDVLDP 365 (538)
Q Consensus 292 ~~~~p~~TSYDY~APi~E~G~---~t~~Ky~~lr~~i~~~~~~~~p~~P~~~~~~~yg~v--~-l~~~~~L~~~l~~l~~ 365 (538)
....|..|++++.+.+.+.|. .+- +..+.....-.|......+-|. ...-+-+ . +.+...++.....+.
T Consensus 311 me~~P~~vn~~~~n~~~~~G~~~l~s~-~~~A~g~~~v~yf~~r~s~~~~---e~~h~~v~~~v~~~~~~~~~ev~~vg- 385 (673)
T COG1874 311 MEQLPSVVNWALYNKLKRPGALRLPSL-QAVAHGADNVIYFQWRQSPSPR---EKSHDGVISPVLSENTRLFREVAAVG- 385 (673)
T ss_pred ccCCcchhhhhhccCCCCCcccccccc-ccccccCceEEEEEeecCCChH---hhccCcccccccCccccccchhhhhh-
Confidence 234689999999999999999 332 2222221111121111111111 1111111 1 223334444433221
Q ss_pred CCceecCCCCc--hhhcCCcccEEEEEeeeCCCCCCcccccCCccceEEEEeCCCcCCCCCCCeeEEEEEeec-ccceee
Q 009269 366 ADVVESENPLS--MESVGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSL 442 (538)
Q Consensus 366 ~~~~~s~~P~s--mE~lgQ~~GyvlY~t~i~~~~~~~~L~~~~v~Dra~Vfvdg~~~~~~~~~~~vg~l~r~~-~~~~~l 442 (538)
+.-.+++ ||...|++++++|.++..=. ..........++.+++.-. .+.-++-+.. +..+..
T Consensus 386 ----~~l~~~~~~~~~~~~a~va~~~d~E~~Wa--~~~~~~~~~~~~~Y~~~~~---------~~~~~l~~~~i~vdvi~ 450 (673)
T COG1874 386 ----EELKSLPDVMEARVQAYVAILFDYESRWA--FEDEDGGESSALRYPFGVL---------HLYEALIETGIPVDVIL 450 (673)
T ss_pred ----HhhhccccccccccccceeEEeecccccc--cccccccccccccchhhhh---------hhHHHHHhhCCceeEec
Confidence 1113334 99999999999997776521 1223333444666665543 2211221110 111111
Q ss_pred cccCCCCCcEEEE---EEEecCccccCCCCCC-----CCCcccceeeCCEEecCeEEEeecCC
Q 009269 443 PNFRCGSNISLFV---LVENMGRVNYGPYMFD-----EKGILSSVYLGGKVLRGWKMIPVPFH 497 (538)
Q Consensus 443 ~~~~~~~~~~L~I---LVEN~GRvNyG~~~~d-----~KGi~g~V~l~~~~L~~W~~~~lpl~ 497 (538)
+.....+-..|.+ .++|++|++.++...+ ..|+..++......+..|.-..+|.+
T Consensus 451 ~~~~~~~y~~L~~p~l~~~~~~~~~r~~~f~~~gG~~v~g~~sG~~~e~~~~~~~~~~g~~~d 513 (673)
T COG1874 451 EGSELDGYKLLIVPVLYIVNSERVDRAKKFVENGGTLVLGPRSGIVNEHDFLVTGGYPGLLRD 513 (673)
T ss_pred CcccccCceEEEEeeeeccchhhHhhHHHHHhcCCeEEEeeecccccchheeecCCCCcchHH
Confidence 1111223456666 7899999999887643 66677777777777777877666665
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=2.7e-21 Score=204.52 Aligned_cols=138 Identities=26% Similarity=0.371 Sum_probs=111.5
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEE-cccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCC
Q 009269 16 LHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG 94 (538)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~G 94 (538)
+++..+|++.|+++|++||++|||+|++ .+.|+.+||+||+|||+. ||++|++|+++||+|||+. ...
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~---lD~~l~~a~~~Gi~viL~~--------~~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSW---LDRVLDLAAKHGIKVILGT--------PTA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HH---HHHHHHHHHCTT-EEEEEE--------CTT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHH---HHHHHHHHHhccCeEEEEe--------ccc
Confidence 5677899999999999999999999996 678999999999999999 9999999999999999993 367
Q ss_pred CCcccccccCCCceec----------------CCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCC---CC
Q 009269 95 GFPAWLLAKKPALKLR----------------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS---YG 155 (538)
Q Consensus 95 G~P~Wl~~~~p~~~~R----------------~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~---~~ 155 (538)
..|.||.+++|++... .++|.|++++++++++|+++++. .+.||+|||+||++. |+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-----~p~vi~~~i~NE~~~~~~~~ 145 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-----HPAVIGWQIDNEPGYHRCYS 145 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-----TTTEEEEEECCSTTCTS--S
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-----cceEEEEEeccccCcCcCCC
Confidence 7999999888886531 35889999999999999888765 468999999999976 33
Q ss_pred --CcHHHHHHHHHHHH
Q 009269 156 --DDKEYLHHLVTLAR 169 (538)
Q Consensus 156 --~~~~y~~~L~~~~~ 169 (538)
+.++|.+||+++|.
T Consensus 146 ~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 146 PACQAAFRQWLKEKYG 161 (374)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhC
Confidence 56789999999985
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.26 E-value=2.3e-10 Score=117.62 Aligned_cols=147 Identities=24% Similarity=0.348 Sum_probs=100.6
Q ss_pred CceecCEeeEEEEEeecCC------CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHH
Q 009269 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (538)
Q Consensus 1 ~f~~dG~p~~i~sG~~Hy~------r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~ 74 (538)
.|+|||||+.|.|...|.. .++.+.|+.+|++||++|+|+||+ .|-|.+ .+|+++|.+
T Consensus 7 ~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~~~~cD~ 70 (298)
T PF02836_consen 7 GFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRFYDLCDE 70 (298)
T ss_dssp EEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHHHHHHHH
T ss_pred EEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHHHHHHhh
Confidence 4899999999999999964 267999999999999999999999 677652 899999999
Q ss_pred cCCeEEeecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCC
Q 009269 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (538)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~ 154 (538)
.||.|+.-+ |. .+.-.|-.. ........+|.+.+.+.+-+++++.+.+. .+.||||=+-||-
T Consensus 71 ~GilV~~e~-~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~N-----HPSIi~W~~gNE~--- 132 (298)
T PF02836_consen 71 LGILVWQEI-PL-------EGHGSWQDF--GNCNYDADDPEFRENAEQELREMVRRDRN-----HPSIIMWSLGNES--- 132 (298)
T ss_dssp HT-EEEEE--S--------BSCTSSSST--SCTSCTTTSGGHHHHHHHHHHHHHHHHTT------TTEEEEEEEESS---
T ss_pred cCCEEEEec-cc-------cccCccccC--CccccCCCCHHHHHHHHHHHHHHHHcCcC-----cCchheeecCccC---
Confidence 999999873 11 111112111 01123467899998888878887777765 4699999999998
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEec
Q 009269 155 GDDKEYLHHLVTLARAHLGKDIILYTTD 182 (538)
Q Consensus 155 ~~~~~y~~~L~~~~~~~~G~~v~l~t~d 182 (538)
....+++.|.+++++...-....++++
T Consensus 133 -~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 133 -DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp -HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred -ccccchhHHHHHHHhcCCCCceeeccc
Confidence 346788888888888543332333333
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.12 E-value=2.1e-09 Score=107.55 Aligned_cols=157 Identities=22% Similarity=0.396 Sum_probs=109.5
Q ss_pred ecCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcC-CCCCc-eeecchhhHHHHHHHHHHcCCeEEe
Q 009269 4 KDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-PKPGK-LVFSGIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 4 ~dG~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-p~~G~-fdF~g~~Dl~~fl~la~~~GL~Vil 81 (538)
.+|+++.+.+-+.|... ...-++.++.||++|+|+||+.|.|...+ +.|+. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 47999999999999321 22788999999999999999999995555 67765 7767777899999999999999999
Q ss_pred ecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCc----
Q 009269 82 RPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDD---- 157 (538)
Q Consensus 82 rpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~---- 157 (538)
. +++. |.|...... . ...+...+....+++.|+.+++. ..+|++++|-||.......
T Consensus 81 d----~h~~------~~w~~~~~~-~---~~~~~~~~~~~~~~~~la~~y~~-----~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 81 D----LHNA------PGWANGGDG-Y---GNNDTAQAWFKSFWRALAKRYKD-----NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp E----EEES------TTCSSSTST-T---TTHHHHHHHHHHHHHHHHHHHTT-----TTTTEEEESSSSGCSTTSTTTTS
T ss_pred E----eccC------ccccccccc-c---ccchhhHHHHHhhhhhhccccCC-----CCcEEEEEecCCccccCCccccc
Confidence 8 3332 666433111 0 12222333444455556655543 4579999999999875322
Q ss_pred -------HHHHHHHHHHHHHhcCCceEEEEec
Q 009269 158 -------KEYLHHLVTLARAHLGKDIILYTTD 182 (538)
Q Consensus 158 -------~~y~~~L~~~~~~~~G~~v~l~t~d 182 (538)
.++++.+.+.+|+ .+-+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~-~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRA-ADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHH-TTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHh-cCCcceeecCC
Confidence 4566777777888 56665555443
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.11 E-value=1.6e-08 Score=113.83 Aligned_cols=142 Identities=22% Similarity=0.193 Sum_probs=99.2
Q ss_pred CceecCEeeEEEEEeecCC------CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHH
Q 009269 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (538)
Q Consensus 1 ~f~~dG~p~~i~sG~~Hy~------r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~ 74 (538)
.|+|||+|+++.|.+.|.. .++.+.|..+|+.||++|+|+||+ .|-|.+ .+|+++|.+
T Consensus 284 ~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~~~~~~cD~ 347 (604)
T PRK10150 284 QFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------EEMLDLADR 347 (604)
T ss_pred EEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------HHHHHHHHh
Confidence 4899999999999998853 266889999999999999999999 466642 799999999
Q ss_pred cCCeEEeecCCceeeecCCCCCccccc-------ccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEcc
Q 009269 75 LDLLVMLRPGPYICAEWDLGGFPAWLL-------AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQI 147 (538)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~-------~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QV 147 (538)
.||+|+... |. + |+..|.. +..+....-..+|.+.++..+-+++++.+. .|.+.||||-+
T Consensus 348 ~GllV~~E~-p~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~-----~NHPSIi~Ws~ 414 (604)
T PRK10150 348 HGIVVIDET-PA-V------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARD-----KNHPSVVMWSI 414 (604)
T ss_pred cCcEEEEec-cc-c------cccccccccccccccccccccccccchhHHHHHHHHHHHHHHhc-----cCCceEEEEee
Confidence 999999872 11 1 1111211 101111112345666666665555555554 45679999999
Q ss_pred ccccCCCC-CcHHHHHHHHHHHHHh
Q 009269 148 ENEFGSYG-DDKEYLHHLVTLARAH 171 (538)
Q Consensus 148 ENEyg~~~-~~~~y~~~L~~~~~~~ 171 (538)
-||...-. ....+++.|.+.+++.
T Consensus 415 gNE~~~~~~~~~~~~~~l~~~~k~~ 439 (604)
T PRK10150 415 ANEPASREQGAREYFAPLAELTRKL 439 (604)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhh
Confidence 99975322 3456778888888884
No 9
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.76 E-value=1.2e-07 Score=95.55 Aligned_cols=113 Identities=21% Similarity=0.367 Sum_probs=87.1
Q ss_pred CCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHH
Q 009269 47 WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGV 126 (538)
Q Consensus 47 Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~ 126 (538)
|...||++|+|||+. .+++++.|+++||.| |..+. -|-. ..|.|+... + .+...+++++|+++
T Consensus 3 W~~~ep~~G~~n~~~---~D~~~~~a~~~gi~v--~gH~l---~W~~-~~P~W~~~~-~-------~~~~~~~~~~~i~~ 65 (254)
T smart00633 3 WDSTEPSRGQFNFSG---ADAIVNFAKENGIKV--RGHTL---VWHS-QTPDWVFNL-S-------KETLLARLENHIKT 65 (254)
T ss_pred cccccCCCCccChHH---HHHHHHHHHHCCCEE--EEEEE---eecc-cCCHhhhcC-C-------HHHHHHHHHHHHHH
Confidence 899999999999999 899999999999998 33222 2533 689999752 2 34567888888888
Q ss_pred HHHHhccccccCCCCEEEEccccccCCC----------C--CcHHHHHHHHHHHHHhcCCceEEEEecCC
Q 009269 127 LLPKIAPLLYDIGGPIVMVQIENEFGSY----------G--DDKEYLHHLVTLARAHLGKDIILYTTDGG 184 (538)
Q Consensus 127 l~~~l~~~~~~~gGpII~~QVENEyg~~----------~--~~~~y~~~L~~~~~~~~G~~v~l~t~dg~ 184 (538)
++.+++ |.|.+|+|-||.-.. . ...+|+...-+.+|+ ..-++.||.+|..
T Consensus 66 v~~ry~-------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~-~~P~a~l~~Ndy~ 127 (254)
T smart00633 66 VVGRYK-------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYARE-ADPDAKLFYNDYN 127 (254)
T ss_pred HHHHhC-------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHH-hCCCCEEEEeccC
Confidence 888873 568999999995321 1 234788888888888 4568999999864
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.61 E-value=5.2e-07 Score=107.30 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=94.6
Q ss_pred CceecCEeeEEEEEeecCC-----C-CCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHH
Q 009269 1 MFRKDGEPFRIIGGDLHYF-----R-ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (538)
Q Consensus 1 ~f~~dG~p~~i~sG~~Hy~-----r-~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~ 74 (538)
.|+|||+|+++.|...|-. | ++++.|+.+|+.||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 326 ~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~~fydlcDe 389 (1021)
T PRK10340 326 LFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DPRFYELCDI 389 (1021)
T ss_pred EEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHHHHHHHHH
Confidence 3899999999999998843 2 57899999999999999999999 46665 2799999999
Q ss_pred cCCeEEeecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCC
Q 009269 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (538)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~ 154 (538)
.||+|+-.. |..|..|...+ ....-+++|.|.++..+=+++++.+. .|++.||||=+-||-+.
T Consensus 390 ~GllV~dE~-~~e~~g~~~~~----------~~~~~~~~p~~~~~~~~~~~~mV~Rd-----rNHPSIi~WslGNE~~~- 452 (1021)
T PRK10340 390 YGLFVMAET-DVESHGFANVG----------DISRITDDPQWEKVYVDRIVRHIHAQ-----KNHPSIIIWSLGNESGY- 452 (1021)
T ss_pred CCCEEEECC-cccccCccccc----------ccccccCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccCccc-
Confidence 999999874 33332221100 00112467777654443344444444 45679999999999763
Q ss_pred CCcHHHHHHHHHHHHHh
Q 009269 155 GDDKEYLHHLVTLARAH 171 (538)
Q Consensus 155 ~~~~~y~~~L~~~~~~~ 171 (538)
+. .++.+.+.+++.
T Consensus 453 g~---~~~~~~~~~k~~ 466 (1021)
T PRK10340 453 GC---NIRAMYHAAKAL 466 (1021)
T ss_pred cH---HHHHHHHHHHHh
Confidence 22 346677777774
No 11
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.54 E-value=8.9e-07 Score=105.26 Aligned_cols=132 Identities=20% Similarity=0.305 Sum_probs=93.7
Q ss_pred CceecCEeeEEEEEeecCC------CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHH
Q 009269 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (538)
Q Consensus 1 ~f~~dG~p~~i~sG~~Hy~------r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~ 74 (538)
.|+|||+|+++.|...|-. +++++.|+++|+.||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 342 ~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p~fydlcDe 405 (1027)
T PRK09525 342 LLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HPLWYELCDR 405 (1027)
T ss_pred EEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHHHHHHHHH
Confidence 4899999999999999842 467999999999999999999999 46554 2789999999
Q ss_pred cCCeEEeecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCC
Q 009269 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (538)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~ 154 (538)
.||+|+-.. |. | ..|-.|. . . -.+||.|.+++..=+++++.+. .|++.||||=+-||-+.
T Consensus 406 ~GilV~dE~-~~---e-~hg~~~~---~-----~-~~~dp~~~~~~~~~~~~mV~Rd-----rNHPSIi~WSlgNE~~~- 465 (1027)
T PRK09525 406 YGLYVVDEA-NI---E-THGMVPM---N-----R-LSDDPRWLPAMSERVTRMVQRD-----RNHPSIIIWSLGNESGH- 465 (1027)
T ss_pred cCCEEEEec-Cc---c-ccCCccc---c-----C-CCCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeCccCCCc-
Confidence 999999883 21 1 0111111 0 0 1457877766555444444444 45679999999999763
Q ss_pred CCcHHHHHHHHHHHHHh
Q 009269 155 GDDKEYLHHLVTLARAH 171 (538)
Q Consensus 155 ~~~~~y~~~L~~~~~~~ 171 (538)
+ .....+.+.+++.
T Consensus 466 g---~~~~~l~~~~k~~ 479 (1027)
T PRK09525 466 G---ANHDALYRWIKSN 479 (1027)
T ss_pred C---hhHHHHHHHHHhh
Confidence 2 2345666666663
No 12
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=7.3e-07 Score=102.92 Aligned_cols=112 Identities=25% Similarity=0.320 Sum_probs=89.5
Q ss_pred CceecCEeeEEEEEeecCC-----CC-CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHH
Q 009269 1 MFRKDGEPFRIIGGDLHYF-----RI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (538)
Q Consensus 1 ~f~~dG~p~~i~sG~~Hy~-----r~-p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~ 74 (538)
.|.|||||+++-|..-|.+ |. ..+..+++|++||++|+|+|||- |-|+ =..|+++|.+
T Consensus 292 ~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~~~ydLcDe 355 (808)
T COG3250 292 LLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SEEFYDLCDE 355 (808)
T ss_pred eEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CHHHHHHHHH
Confidence 4899999999999999976 33 35559999999999999999993 8887 3899999999
Q ss_pred cCCeEEeecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCC
Q 009269 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (538)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~ 153 (538)
.||+||-. ...+|-. .| +|+.|++.+..=+++++.+.+. ++.||||=+.||-|.
T Consensus 356 lGllV~~E----a~~~~~~--~~--------------~~~~~~k~~~~~i~~mver~kn-----HPSIiiWs~gNE~~~ 409 (808)
T COG3250 356 LGLLVIDE----AMIETHG--MP--------------DDPEWRKEVSEEVRRMVERDRN-----HPSIIIWSLGNESGH 409 (808)
T ss_pred hCcEEEEe----cchhhcC--CC--------------CCcchhHHHHHHHHHHHHhccC-----CCcEEEEeccccccC
Confidence 99999998 3333321 11 6788888777766666666554 569999999999875
No 13
>PLN02161 beta-amylase
Probab=98.45 E-value=7.6e-07 Score=96.36 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=69.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCC-CCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCC-----CC
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-----GF 96 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~G-----G~ 96 (538)
++..+..|+++|++|+..|.+.|.|...|. .|++|||++ ..++++|+++.||++.+-..-.-|+. +-| -|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccC
Confidence 556788999999999999999999999998 699999999 89999999999999777766666665 223 28
Q ss_pred cccccc---cCCCcee
Q 009269 97 PAWLLA---KKPALKL 109 (538)
Q Consensus 97 P~Wl~~---~~p~~~~ 109 (538)
|.|+.+ .+|++..
T Consensus 192 P~WV~~~g~~~pDi~f 207 (531)
T PLN02161 192 PLWIREIGDVNKDIYY 207 (531)
T ss_pred CHHHHhhhccCCCceE
Confidence 999986 3566644
No 14
>PLN02803 beta-amylase
Probab=98.45 E-value=8.3e-07 Score=96.55 Aligned_cols=118 Identities=23% Similarity=0.446 Sum_probs=89.2
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCC------
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG------ 95 (538)
++..+..|+++|++|+..|.+.|.|.+.|.. |++|||+| ..++++|+++.||++.+-..-.-||. +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG--NVGD~~~Ip 180 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG--NVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 5667889999999999999999999999995 99999999 89999999999999877766666765 333
Q ss_pred Ccccccc---cCCCceecC----CCHHH----------------HHHHHHHHHHHHHHhccccccCCCCEEEEccc
Q 009269 96 FPAWLLA---KKPALKLRS----SDRAY----------------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (538)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~----~d~~y----------------l~~~~~~~~~l~~~l~~~~~~~gGpII~~QVE 148 (538)
||.|+.+ ++|++.... .+.+| ++.-..|++..-..+++++ |+.|..|||.
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l---~~~I~eI~VG 253 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL---GGVIAEIQVG 253 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh---cCceEEEEec
Confidence 9999986 367665421 11111 2334445555566666664 5799999984
No 15
>PLN00197 beta-amylase; Provisional
Probab=98.43 E-value=9.3e-07 Score=96.44 Aligned_cols=118 Identities=25% Similarity=0.408 Sum_probs=88.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCC-CCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCC------
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG------ 95 (538)
++..+..|+++|++|+..|.+.|.|.+.|. .|++|||+| ..++++|++++||++.+--.-.-||. +-|
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG--NVGD~~~Ip 200 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG--NVGDSCTIP 200 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 567899999999999999999999999998 699999999 89999999999999777766666765 333
Q ss_pred Ccccccc---cCCCceecC----CCHHH----------------HHHHHHHHHHHHHHhccccccCCCCEEEEccc
Q 009269 96 FPAWLLA---KKPALKLRS----SDRAY----------------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (538)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~----~d~~y----------------l~~~~~~~~~l~~~l~~~~~~~gGpII~~QVE 148 (538)
||.|+.+ ++|++.... .+++| ++.-..|++..-..+++++ ++.|.-|||.
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l---~~~I~eI~VG 273 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLL---GDTIVEIQVG 273 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---cCceeEEEec
Confidence 9999986 366654421 01111 2344445555555666654 4579999984
No 16
>PLN02705 beta-amylase
Probab=98.41 E-value=1.1e-06 Score=96.67 Aligned_cols=119 Identities=17% Similarity=0.322 Sum_probs=88.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCC-CCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCC------
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG------ 95 (538)
++..+..|+++|++|+..|.+.|.|...|. .|++|||++ ..++++|+++.||++.+-..-.-||. +.|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG--NVGD~~~IP 341 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG--NASGNVMIS 341 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC--CCCCccccc
Confidence 677899999999999999999999999998 599999999 89999999999999777665666776 434
Q ss_pred Ccccccc---cCCCceecC----CCH----------------HHHHHHHHHHHHHHHHhccccccCCCCEEEEccc
Q 009269 96 FPAWLLA---KKPALKLRS----SDR----------------AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (538)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~----~d~----------------~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVE 148 (538)
||.|+.+ ++|++.... .+. .-++.-..||+..-..+++++ .+|.|.-|||.
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--~~g~I~eI~VG 415 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF--VEGLITAVEIG 415 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc--cCCceeEEEec
Confidence 9999995 356654321 011 112344445555555556653 24688889884
No 17
>PLN02905 beta-amylase
Probab=98.38 E-value=1.4e-06 Score=96.01 Aligned_cols=119 Identities=16% Similarity=0.338 Sum_probs=87.5
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCC-CCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCC------
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG------ 95 (538)
++..+..|+++|++|+..|.+.|.|.+.|. .|++|||++ ..++++|+++.||++.+-..-.-||. +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG--NVGD~~~IP 359 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG--NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 556788999999999999999999999998 699999999 89999999999999777766667775 333
Q ss_pred Ccccccc---cCCCceecC----CCH----------------HHHHHHHHHHHHHHHHhccccccCCCCEEEEccc
Q 009269 96 FPAWLLA---KKPALKLRS----SDR----------------AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (538)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~----~d~----------------~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVE 148 (538)
||.|+.+ .+|++.... .++ .-++.-..|++..-..+++++ .+|.|.-|||.
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--~~g~I~eI~VG 433 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFF--EDGVISMVEVG 433 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCceEEEEec
Confidence 9999986 356654421 011 112333444444555555553 24688889884
No 18
>PLN02801 beta-amylase
Probab=98.35 E-value=1.8e-06 Score=93.57 Aligned_cols=119 Identities=20% Similarity=0.388 Sum_probs=88.7
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCC-CCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCC------
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG------ 95 (538)
++.-+..|+++|++|+..|.+.|.|...|. .|++|||++ ..++++|++++||++.+--.-.-||. +-|
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG--NVGD~~~Ip 110 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG--NVGDAVNIP 110 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 667899999999999999999999999998 599999999 89999999999999877666666765 333
Q ss_pred Ccccccc---cCCCceecC----CCHHH----------------HHHHHHHHHHHHHHhccccccCCCCEEEEccc
Q 009269 96 FPAWLLA---KKPALKLRS----SDRAY----------------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (538)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~----~d~~y----------------l~~~~~~~~~l~~~l~~~~~~~gGpII~~QVE 148 (538)
+|.|+.+ .+|++.... .+++| ++.-..|++..-..++++. .+|.|..|||.
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l--~~~~I~eI~VG 184 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL--EAGVIIDIEVG 184 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc--cCCeeEEEEEc
Confidence 8999986 356654321 11222 2333445555555666653 24789999884
No 19
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.35 E-value=3.7e-05 Score=79.39 Aligned_cols=237 Identities=18% Similarity=0.283 Sum_probs=113.8
Q ss_pred ce-ecCEeeEEEEEeecCC---CCCHhhHHHHHHHHHHcCCCEEEEccc--CCCc--------CC----CCCceeecch-
Q 009269 2 FR-KDGEPFRIIGGDLHYF---RILPQHWEDRLLRAKALGLNTIQTYVP--WNLH--------EP----KPGKLVFSGI- 62 (538)
Q Consensus 2 f~-~dG~p~~i~sG~~Hy~---r~p~~~W~~~l~k~ka~G~NtV~~yv~--Wn~h--------Ep----~~G~fdF~g~- 62 (538)
|. -||+||+.++ .-.+. |...++|+.-|+..|+-|||+|++=|+ |... .| .++.+||+..
T Consensus 5 f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N 83 (289)
T PF13204_consen 5 FVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPN 83 (289)
T ss_dssp EEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT--
T ss_pred EecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCC
Confidence 44 6999999998 55553 677899999999999999999999765 4432 11 1223777653
Q ss_pred ----hhHHHHHHHHHHcCCeEEeec---CCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhcccc
Q 009269 63 ----ADLVSFLKLCQKLDLLVMLRP---GPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLL 135 (538)
Q Consensus 63 ----~Dl~~fl~la~~~GL~Vilrp---GPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~ 135 (538)
..+++.|++|.+.||.+-|-| +||.-+-|-.| |. .| =.+.+++|.+.|+.+++.+-
T Consensus 84 ~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~-------~m--------~~e~~~~Y~~yv~~Ry~~~~ 146 (289)
T PF13204_consen 84 PAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PN-------IM--------PPENAERYGRYVVARYGAYP 146 (289)
T ss_dssp --HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TT-------SS---------HHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--cc-------CC--------CHHHHHHHHHHHHHHHhcCC
Confidence 479999999999999876553 23333444333 11 11 13678899999999998862
Q ss_pred ccCCCCEEEEccccccCCCCCcHHHHHHHHHHHHHhcCCceEEEEecCCCccccccCccCCCeeeeeecCCCCCC--Cch
Q 009269 136 YDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAE--PWP 213 (538)
Q Consensus 136 ~~~gGpII~~QVENEyg~~~~~~~y~~~L~~~~~~~~G~~v~l~t~dg~~~~~~~~g~l~~~~v~~~~~f~~~~~--~~~ 213 (538)
+|| |=|-||+.......++.+.+.+.+++..+-...-++.-+.... ........-+...-++++.. ...
T Consensus 147 -----Nvi-W~l~gd~~~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~---~~~~~~~~Wldf~~~Qsgh~~~~~~ 217 (289)
T PF13204_consen 147 -----NVI-WILGGDYFDTEKTRADWDAMARGIKENDPYQLITIHPCGRTSS---PDWFHDEPWLDFNMYQSGHNRYDQD 217 (289)
T ss_dssp -----SEE-EEEESSS--TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBT---HHHHTT-TT--SEEEB--S--TT--
T ss_pred -----CCE-EEecCccCCCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCc---chhhcCCCcceEEEeecCCCcccch
Confidence 577 6699999222367788888888888865555223333332100 00001110111111222211 111
Q ss_pred hHHH---HHHhcCCCCCCCccccc-ccccccccCCCCccCChHHHHH-HHHHHHHcC
Q 009269 214 IFKL---QKQFNAPGKSPPLSSEF-YTGWLTHWGEKIAKTDADFTAS-YLEKILSQN 265 (538)
Q Consensus 214 ~f~~---~~~~~~~~~~P~~~~E~-~~Gwf~~WG~~~~~~~~~~~~~-~l~~~l~~~ 265 (538)
.... ...++..+.+|.+..|- |-|.-..+.......+++++.. .-..+++++
T Consensus 218 ~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 218 NWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred HHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 1112 23344445789999885 5555443333223344544443 345566655
No 20
>TIGR03356 BGL beta-galactosidase.
Probab=98.16 E-value=7.3e-06 Score=88.97 Aligned_cols=98 Identities=12% Similarity=0.185 Sum_probs=77.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (538)
-..|+++|+.||++|+|++|+-|.|...+|. +|++|.++..=.+++|+.|.++||.+|+-- + .-.+|.||.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL----~----Hfd~P~~l~ 124 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL----Y----HWDLPQALE 124 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee----c----cCCccHHHH
Confidence 4678999999999999999999999999999 899998877779999999999999998872 2 235899998
Q ss_pred ccCCCceecCCCHHHHHHHHHHHHHHHHHhcc
Q 009269 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (538)
Q Consensus 102 ~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~ 133 (538)
++ .+. .++...++-.+|.+.+++++.+
T Consensus 125 ~~-gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 125 DR-GGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred hc-CCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 64 443 2355556666666666666643
No 21
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=98.15 E-value=1.8e-06 Score=91.86 Aligned_cols=114 Identities=21% Similarity=0.387 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCC-----CCcc
Q 009269 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-----GFPA 98 (538)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~G-----G~P~ 98 (538)
.-+..|+++|++|+..|.+.|.|...|.. |++|||++ .+++++++++.||++.+-..-.-|+. +-| -||.
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGg-NvgD~~~IpLP~ 92 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGG-NVGDDCNIPLPS 92 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSS-STTSSSEB-S-H
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCC-CCCCccCCcCCH
Confidence 56789999999999999999999999997 99999999 89999999999999877655566653 112 3899
Q ss_pred cccc---cCCCcee--cC------------CCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccc
Q 009269 99 WLLA---KKPALKL--RS------------SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (538)
Q Consensus 99 Wl~~---~~p~~~~--R~------------~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVE 148 (538)
|+.+ ++ ++.. |+ .... ++.-..|++.....++++. +.|..|||-
T Consensus 93 Wv~~~~~~~-di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~----~~I~~I~vg 153 (402)
T PF01373_consen 93 WVWEIGKKD-DIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYL----STITEIQVG 153 (402)
T ss_dssp HHHHHHHHS-GGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHH----TGEEEEEE-
T ss_pred HHHhccccC-CcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHH----hhheEEEec
Confidence 9984 23 4432 11 1223 5555666666777776664 688888763
No 22
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.08 E-value=0.0001 Score=77.16 Aligned_cols=269 Identities=18% Similarity=0.282 Sum_probs=159.6
Q ss_pred EEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEc--ccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 11 IIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTY--VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 11 i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~y--v~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
.+|.+++..++..+. ..+.+-..-||.|..- .-|+..||++|+|||+. .+++++.|+++||.|--.+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~---~D~~~~~a~~~g~~vrGH~----- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFES---ADAILDWARENGIKVRGHT----- 79 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HH---HHHHHHHHHHTT-EEEEEE-----
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCccc---hhHHHHHHHhcCcceeeee-----
Confidence 788999987776542 3445555679999884 66999999999999998 8999999999999886441
Q ss_pred eecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCC-----C--------
Q 009269 89 AEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-----G-------- 155 (538)
Q Consensus 89 aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~-----~-------- 155 (538)
==|.. ..|.|+... +.... ...+...+.+++++++++.+++.. |.|.+|-|=||.=.- +
T Consensus 80 LvW~~-~~P~w~~~~-~~~~~-~~~~~~~~~l~~~I~~v~~~y~~~-----g~i~~WDVvNE~i~~~~~~~~~r~~~~~~ 151 (320)
T PF00331_consen 80 LVWHS-QTPDWVFNL-ANGSP-DEKEELRARLENHIKTVVTRYKDK-----GRIYAWDVVNEAIDDDGNPGGLRDSPWYD 151 (320)
T ss_dssp EEESS-SS-HHHHTS-TTSSB-HHHHHHHHHHHHHHHHHHHHTTTT-----TTESEEEEEES-B-TTSSSSSBCTSHHHH
T ss_pred EEEcc-cccceeeec-cCCCc-ccHHHHHHHHHHHHHHHHhHhccc-----cceEEEEEeeecccCCCccccccCChhhh
Confidence 11544 789999973 11000 001247899999999998887542 899999999996211 0
Q ss_pred -CcHHHHHHHHHHHHHhcCCceEEEEecCCCcccc-------------ccCccCCCeeeeeecCC----CCCCCchhHHH
Q 009269 156 -DDKEYLHHLVTLARAHLGKDIILYTTDGGTRETL-------------LKGTIRGDAVFAAVDFS----TGAEPWPIFKL 217 (538)
Q Consensus 156 -~~~~y~~~L~~~~~~~~G~~v~l~t~dg~~~~~~-------------~~g~l~~~~v~~~~~f~----~~~~~~~~f~~ 217 (538)
...+|+...-+.+++. --++.||-||......- ..|. + +..|.++ ....+....+.
T Consensus 152 ~lG~~yi~~aF~~A~~~-~P~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gv-p----IdgIG~Q~H~~~~~~~~~i~~~ 225 (320)
T PF00331_consen 152 ALGPDYIADAFRAAREA-DPNAKLFYNDYNIESPAKRDAYLNLVKDLKARGV-P----IDGIGLQSHFDAGYPPEQIWNA 225 (320)
T ss_dssp HHTTCHHHHHHHHHHHH-HTTSEEEEEESSTTSTHHHHHHHHHHHHHHHTTH-C----S-EEEEEEEEETTSSHHHHHHH
T ss_pred cccHhHHHHHHHHHHHh-CCCcEEEeccccccchHHHHHHHHHHHHHHhCCC-c----cceechhhccCCCCCHHHHHHH
Confidence 1346888888888884 44899999998643320 1121 1 1222222 22122223334
Q ss_pred HHHhcCCCCCCCcccccccccccccCCCCcc------CChHHHHHHHHHHHHcC-CceEEEeecCCCCCCCCCCCCCCCC
Q 009269 218 QKQFNAPGKSPPLSSEFYTGWLTHWGEKIAK------TDADFTASYLEKILSQN-GSAVLYMAHGGTNFGFYNGANTGNT 290 (538)
Q Consensus 218 ~~~~~~~~~~P~~~~E~~~Gwf~~WG~~~~~------~~~~~~~~~l~~~l~~~-~s~n~YM~hGGTNfG~~~Ga~~~~~ 290 (538)
++++...+ .|...+|+ |-....... .-++.+...+..+++.. +++ -|=|=||++.+.+
T Consensus 226 l~~~~~~G-l~i~ITEl-----Dv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v-----~git~Wg~~D~~s---- 290 (320)
T PF00331_consen 226 LDRFASLG-LPIHITEL-----DVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAV-----EGITWWGFTDGYS---- 290 (320)
T ss_dssp HHHHHTTT-SEEEEEEE-----EEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTE-----EEEEESSSBTTGS----
T ss_pred HHHHHHcC-CceEEEee-----eecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCC-----CEEEEECCCCCCc----
Confidence 55564433 58889996 332222110 11223333344444544 122 2334577776543
Q ss_pred CCCCCCCCcCcCCCCccccCCCCChHHHHHHHHH
Q 009269 291 ESDYQPDLTSYDYDAPIKESGDVDNPKFKAIRRV 324 (538)
Q Consensus 291 ~~~~~p~~TSYDY~APi~E~G~~t~~Ky~~lr~~ 324 (538)
|.+... .++..|.++++++.+ -|.++++.
T Consensus 291 ---W~~~~~-~~~~~lfd~~~~~Kp-a~~~~~~a 319 (320)
T PF00331_consen 291 ---WRPDTP-PDRPLLFDEDYQPKP-AYDAIVDA 319 (320)
T ss_dssp ---TTGGHS-EG--SSB-TTSBB-H-HHHHHHHH
T ss_pred ---ccCCCC-CCCCeeECCCcCCCH-HHHHHHhc
Confidence 222211 678899999999985 89988764
No 23
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.76 E-value=0.00046 Score=71.60 Aligned_cols=194 Identities=18% Similarity=0.189 Sum_probs=94.2
Q ss_pred ecCEeeEEEEEeecCCCC-----------CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHH
Q 009269 4 KDGEPFRIIGGDLHYFRI-----------LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLC 72 (538)
Q Consensus 4 ~dG~p~~i~sG~~Hy~r~-----------p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la 72 (538)
.+|++|+|.|-.+.+--. .++.|+.++..||++|+|||++|- -+-..|-++++++.
T Consensus 22 ~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~-------------vdp~~nHd~CM~~~ 88 (314)
T PF03198_consen 22 KNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS-------------VDPSKNHDECMSAF 88 (314)
T ss_dssp TT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES----------------TTS--HHHHHHH
T ss_pred CCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE-------------eCCCCCHHHHHHHH
Confidence 688999999877765322 378999999999999999999973 23345789999999
Q ss_pred HHcCCeEEeecCCceeeecCCCCCcccccccCCCceecCCCH--HHHHHHHHHHHHHHHHhccccccCCCCEEEEccccc
Q 009269 73 QKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDR--AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENE 150 (538)
Q Consensus 73 ~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~--~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENE 150 (538)
++.|+|||+..+. |...+...+| .|-...-.-+.+++..++++. +++++=+.||
T Consensus 89 ~~aGIYvi~Dl~~-------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~-----N~LgFf~GNE 144 (314)
T PF03198_consen 89 ADAGIYVILDLNT-------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD-----NTLGFFAGNE 144 (314)
T ss_dssp HHTT-EEEEES-B-------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T-----TEEEEEEEES
T ss_pred HhCCCEEEEecCC-------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC-----ceEEEEecce
Confidence 9999999999321 2333334445 443322222334677777763 9999999999
Q ss_pred cCCCC---Cc----HHHHHHHHHHHHHhcCC-ceEE--EEecCCC-----ccccccCccC-CCeeeeeecC-CCCCCCch
Q 009269 151 FGSYG---DD----KEYLHHLVTLARAHLGK-DIIL--YTTDGGT-----RETLLKGTIR-GDAVFAAVDF-STGAEPWP 213 (538)
Q Consensus 151 yg~~~---~~----~~y~~~L~~~~~~~~G~-~v~l--~t~dg~~-----~~~~~~g~l~-~~~v~~~~~f-~~~~~~~~ 213 (538)
.-.-. .. ++..+.+|+-+++ .+. .+|+ -++|... ...+.||.-. .-|.|+--.+ .|+.....
T Consensus 145 Vin~~~~t~aap~vKAavRD~K~Yi~~-~~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~ 223 (314)
T PF03198_consen 145 VINDASNTNAAPYVKAAVRDMKAYIKS-KGYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEWCGDSTFE 223 (314)
T ss_dssp SS-STT-GGGHHHHHHHHHHHHHHHHH-SSS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE----SS--HH
T ss_pred eecCCCCcccHHHHHHHHHHHHHHHHh-cCCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeeccceecCCCccc
Confidence 86422 22 4445555555555 344 3444 4566542 1235677532 1123332111 13322111
Q ss_pred --hHH-HHHHhcCCCCCCCccccccc
Q 009269 214 --IFK-LQKQFNAPGKSPPLSSEFYT 236 (538)
Q Consensus 214 --~f~-~~~~~~~~~~~P~~~~E~~~ 236 (538)
.++ +.+.|..- .-|.|.+||..
T Consensus 224 ~SGy~~l~~~f~~y-~vPvffSEyGC 248 (314)
T PF03198_consen 224 TSGYDRLTKEFSNY-SVPVFFSEYGC 248 (314)
T ss_dssp HHSHHHHHHHHTT--SS-EEEEEE--
T ss_pred cccHHHHHHHhhCC-CCCeEEcccCC
Confidence 122 33455322 35999999854
No 24
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.0013 Score=68.36 Aligned_cols=129 Identities=20% Similarity=0.358 Sum_probs=99.5
Q ss_pred HHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCCceecCC
Q 009269 33 AKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSS 112 (538)
Q Consensus 33 ~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~ 112 (538)
.|+++.=|-+.-.=|+..||++|.|+|+. -|+..+.|+++||.+ |--+.| |-+ -.|.|+...+ -+
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe~---AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e------~~ 119 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFEA---ADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE------LS 119 (345)
T ss_pred HhhhcccccccccccccccCCCCccCccc---hHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc------cC
Confidence 34444444444566999999999999999 799999999999954 322333 322 5899998732 45
Q ss_pred CHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccC----CC--------CCcHHHHHHHHHHHHHhcCCceEEEE
Q 009269 113 DRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG----SY--------GDDKEYLHHLVTLARAHLGKDIILYT 180 (538)
Q Consensus 113 d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg----~~--------~~~~~y~~~L~~~~~~~~G~~v~l~t 180 (538)
-+..++.+++++..++.+++. -|+.|-|=||.= ++ +...+|+++.-+.+|+ ..-+..||-
T Consensus 120 ~~~~~~~~e~hI~tV~~rYkg-------~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~Are-adP~AkL~~ 191 (345)
T COG3693 120 KEALAKMVEEHIKTVVGRYKG-------SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIARE-ADPDAKLVI 191 (345)
T ss_pred hHHHHHHHHHHHHHHHHhccC-------ceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHh-hCCCceEEe
Confidence 678999999999999999854 589999999962 21 1457899999999999 788899999
Q ss_pred ecCC
Q 009269 181 TDGG 184 (538)
Q Consensus 181 ~dg~ 184 (538)
||..
T Consensus 192 NDY~ 195 (345)
T COG3693 192 NDYS 195 (345)
T ss_pred eccc
Confidence 9984
No 25
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.35 E-value=0.00025 Score=78.14 Aligned_cols=113 Identities=14% Similarity=0.197 Sum_probs=79.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (538)
-..|+++++.||++|+|+.|+-+.|...+|. ++++|-++..=.+++|+.|.++||.+++- .+ .=.+|.||
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~Vt----L~----H~~~P~~l 141 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVT----LC----HFDVPMHL 141 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE----ee----CCCCCHHH
Confidence 4567999999999999999999999999997 55677777777899999999999998776 22 33699999
Q ss_pred cccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEE
Q 009269 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (538)
Q Consensus 101 ~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII 143 (538)
..++.+..-|..=..|.++++.-++++..+++-+.-=|..+++
T Consensus 142 ~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~ 184 (474)
T PRK09852 142 VTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIM 184 (474)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhh
Confidence 8754444333333445555555444444444444322444433
No 26
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.27 E-value=0.00046 Score=76.13 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccc
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (538)
..|+++++.||++|+|+-|+-|.|....|. +|++|-.|..=.+++|+.+.++||..++-. . .=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL----~----H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL----S----HFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe----e----CCCCCHHHH
Confidence 467999999999999999999999999997 567888887778999999999999988772 1 236899998
Q ss_pred ccCCCceecCCCHHHHHHHHHHHHHHHHHh
Q 009269 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKI 131 (538)
Q Consensus 102 ~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l 131 (538)
.++.+-.-|..-..|.++++.-++++..++
T Consensus 141 ~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrV 170 (477)
T PRK15014 141 QQYGSWTNRKVVDFFVRFAEVVFERYKHKV 170 (477)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHhcCcC
Confidence 754444333333344444444444443333
No 27
>PLN02998 beta-glucosidase
Probab=97.27 E-value=0.00041 Score=76.82 Aligned_cols=114 Identities=8% Similarity=0.072 Sum_probs=85.7
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (538)
-..|+++++.||++|+|+-|+-|.|...+|. .|.+|-+|..=.+++|+.+.++||..++-- . .=-+|.||.
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL----~----H~dlP~~L~ 152 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL----H----HFDLPQALE 152 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe----c----CCCCCHHHH
Confidence 4568999999999999999999999999997 678888898889999999999999877652 1 225899998
Q ss_pred ccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEE
Q 009269 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVM 144 (538)
Q Consensus 102 ~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~ 144 (538)
+++.+..-|..=..|.++++.-++++..+++-+.-=|..++++
T Consensus 153 ~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~ 195 (497)
T PLN02998 153 DEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFA 195 (497)
T ss_pred HhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhh
Confidence 7545554455455677777776666666665543234444433
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.24 E-value=0.0002 Score=78.44 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=77.9
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (538)
-..|+++|+.||++|+|+.+.-|.|...+|. +|++|-.+..=.+++|+.++++||..++- . -.-.+|.||
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vt----L----~H~~~P~~l 128 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVT----L----YHFDLPLWL 128 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEE----E----ESS--BHHH
T ss_pred hhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeee----e----eecccccce
Confidence 4679999999999999999999999999999 69999999888899999999999997776 2 245699999
Q ss_pred cccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEcccccc
Q 009269 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF 151 (538)
Q Consensus 101 ~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEy 151 (538)
.+ +.+.. ++...+.-.+|.+.+++++.++ |-.|-.=||.
T Consensus 129 ~~-~ggw~----~~~~~~~F~~Ya~~~~~~~gd~-------V~~w~T~NEp 167 (455)
T PF00232_consen 129 ED-YGGWL----NRETVDWFARYAEFVFERFGDR-------VKYWITFNEP 167 (455)
T ss_dssp HH-HTGGG----STHHHHHHHHHHHHHHHHHTTT-------BSEEEEEETH
T ss_pred ee-ccccc----CHHHHHHHHHHHHHHHHHhCCC-------cceEEecccc
Confidence 87 33332 3555566666666677776542 3345555664
No 29
>PLN02814 beta-glucosidase
Probab=97.22 E-value=0.00051 Score=76.26 Aligned_cols=112 Identities=10% Similarity=0.122 Sum_probs=83.9
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (538)
-..|+++++.||++|+|+-|+-|.|...+|. +|.+|-+|..=.+++|+.|.++||..++-- + -| -+|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL----~-H~---dlP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL----Y-HY---DLPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe----c-CC---CCCHHHH
Confidence 4568999999999999999999999999997 788999998888999999999999877761 1 13 4799998
Q ss_pred ccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCE
Q 009269 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPI 142 (538)
Q Consensus 102 ~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpI 142 (538)
+++.+-.-|..-..|.++++.-++++..+++-+.-=|..++
T Consensus 148 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 148 DEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred HhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 75555544444456666666666666555554432244333
No 30
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=97.12 E-value=0.0008 Score=74.24 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=80.6
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (538)
-..|+++++.||++|+|+-|.-|.|...+|. +|++|=.|..=.+++|+.+.++||..++-. + .=-+|.||
T Consensus 72 Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL----~----H~dlP~~L 143 (478)
T PRK09593 72 YHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI----T----HFDCPMHL 143 (478)
T ss_pred HHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe----c----ccCCCHHH
Confidence 4678999999999999999999999999997 667888887778999999999999877651 1 22589999
Q ss_pred cccCCCceecCCCHHHHHHHHHHHHHHHHHhccc
Q 009269 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (538)
Q Consensus 101 ~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~ 134 (538)
.+++.+..-|..=..|.++++.-++++..+++-+
T Consensus 144 ~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~W 177 (478)
T PRK09593 144 IEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYW 177 (478)
T ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEE
Confidence 8755555444444566777776666666666544
No 31
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=97.11 E-value=0.00081 Score=74.19 Aligned_cols=112 Identities=11% Similarity=0.096 Sum_probs=83.9
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (538)
-..|+++++.||++|+|+-|+-|.|...+|. +|.+|=.|..=.+++|+.|.++||..++-. . .=-+|.||
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL----~----H~dlP~~L 137 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL----S----HFEMPYHL 137 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe----c----CCCCCHHH
Confidence 4568999999999999999999999999997 667888887778999999999999877662 1 22589999
Q ss_pred cccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCE
Q 009269 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPI 142 (538)
Q Consensus 101 ~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpI 142 (538)
.+++.+..-|..-..|.++++.-++++..+++-+.-=|..++
T Consensus 138 ~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 138 VTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred HHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 875556544544456777777666666666655432244443
No 32
>PLN02849 beta-glucosidase
Probab=97.05 E-value=0.00089 Score=74.33 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=84.6
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (538)
-..|+++++.||++|+|+-|+-|.|...+|. .|.+|=.|..=.+++|+.+.++||..++-- + .=-+|.||.
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL----~----H~dlP~~L~ 149 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL----F----HYDHPQYLE 149 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee----c----CCCCcHHHH
Confidence 4568999999999999999999999999997 478888888888999999999999877651 1 225899998
Q ss_pred ccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEE
Q 009269 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (538)
Q Consensus 102 ~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII 143 (538)
+++.+-.-|..-..|.++++.-++++..+++-+.-=|..+++
T Consensus 150 ~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~ 191 (503)
T PLN02849 150 DDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIF 191 (503)
T ss_pred HhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhh
Confidence 754555444444566777777666666666554322444444
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.0031 Score=68.21 Aligned_cols=114 Identities=14% Similarity=0.245 Sum_probs=71.7
Q ss_pred HhhH-----HHHHHHHHHcCCCEEEEcccCCCcCCC----CCceeecchhhHHHHHHHHHHcCCeEEee----cCCceee
Q 009269 23 PQHW-----EDRLLRAKALGLNTIQTYVPWNLHEPK----PGKLVFSGIADLVSFLKLCQKLDLLVMLR----PGPYICA 89 (538)
Q Consensus 23 ~~~W-----~~~l~k~ka~G~NtV~~yv~Wn~hEp~----~G~fdF~g~~Dl~~fl~la~~~GL~Vilr----pGPyi~a 89 (538)
...| ++.+..||.+|||+||+++.|..+++. |...+=+-..=|++.|+.|++.||+|++- ||.-.|-
T Consensus 67 ~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~ 146 (407)
T COG2730 67 ESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGH 146 (407)
T ss_pred hhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCc
Confidence 6678 899999999999999999995554553 33331111114889999999999999998 3222221
Q ss_pred ecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCC
Q 009269 90 EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (538)
Q Consensus 90 Ew~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~ 153 (538)
-..|....+.. ....+++-.+-++.|..+.+. .-.||++|+=||.-.
T Consensus 147 ------~~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f~~-----~~~VIg~~~~NEP~~ 193 (407)
T COG2730 147 ------EHSGYTSDYKE------ENENVEATIDIWKFIANRFKN-----YDTVIGFELINEPNG 193 (407)
T ss_pred ------Ccccccccccc------cchhHHHHHHHHHHHHHhccC-----CCceeeeeeecCCcc
Confidence 12333332221 112233333333344444443 568999999999964
No 34
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.92 E-value=0.003 Score=66.64 Aligned_cols=106 Identities=23% Similarity=0.243 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCC-CceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccc---c
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKP-GKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL---A 102 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~-G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~---~ 102 (538)
+|.|+.+|+.|+|+||.=| |+ .|.. |..|.+. ..++.+-|+++||+|+|..- .-..|-- +
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~~---~~~~akrak~~Gm~vlldfH----------YSD~WaDPg~Q 90 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLED---VIALAKRAKAAGMKVLLDFH----------YSDFWADPGKQ 90 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHHH---HHHHHHHHHHTT-EEEEEE-----------SSSS--BTTB-
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHHH---HHHHHHHHHHCCCeEEEeec----------ccCCCCCCCCC
Confidence 6789999999999999988 54 4444 4444333 45555556789999999832 1122221 0
Q ss_pred cCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccC
Q 009269 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG 152 (538)
Q Consensus 103 ~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg 152 (538)
..|.-..-.+-..-.++|..|.+.++..|+. +|=.+=||||.||..
T Consensus 91 ~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~----~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 91 NKPAAWANLSFDQLAKAVYDYTKDVLQALKA----AGVTPDMVQVGNEIN 136 (332)
T ss_dssp B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH----TT--ESEEEESSSGG
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHHHHH----CCCCccEEEeCcccc
Confidence 0121111123455678899999999999965 377888999999974
No 35
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.84 E-value=0.0017 Score=71.59 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=73.3
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (538)
-..|+++++.||++|+|+-|+-|.|...+|. .|.+|-.|..=.+++|+.|.++||..++-. + .=.+|.||.
T Consensus 53 Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL----~----H~dlP~~L~ 124 (469)
T PRK13511 53 YHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL----H----HFDTPEALH 124 (469)
T ss_pred hhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe----c----CCCCcHHHH
Confidence 3567999999999999999999999999997 678888888888999999999999877662 1 226899998
Q ss_pred ccCCCceecCCCHHHHHHHHHHHHHHHH
Q 009269 102 AKKPALKLRSSDRAYLQLVERWWGVLLP 129 (538)
Q Consensus 102 ~~~p~~~~R~~d~~yl~~~~~~~~~l~~ 129 (538)
++ .+-.-|..-..|.++++.-++++..
T Consensus 125 ~~-GGW~n~~~v~~F~~YA~~~~~~fgd 151 (469)
T PRK13511 125 SN-GDWLNRENIDHFVRYAEFCFEEFPE 151 (469)
T ss_pred Hc-CCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 73 4433333334455555554444444
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.81 E-value=0.035 Score=53.01 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcC-----CC---CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeee
Q 009269 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-----PK---PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (538)
Q Consensus 19 ~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-----p~---~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aE 90 (538)
-.+.++.|++.++.||++|++||=+- |...+ |. ++.|.-....=|+.+|++|++.||+|.+..
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl------- 85 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGL------- 85 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeC-------
Confidence 47899999999999999999999542 22222 11 112222222248999999999999999983
Q ss_pred cCCCCCcccccccCCCceecCCCHHH-HHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCC-CcHHHHHHHHHHH
Q 009269 91 WDLGGFPAWLLAKKPALKLRSSDRAY-LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DDKEYLHHLVTLA 168 (538)
Q Consensus 91 w~~GG~P~Wl~~~~p~~~~R~~d~~y-l~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~-~~~~y~~~L~~~~ 168 (538)
+--|.|..+ .|+.. .+..++ ++..+.. .+.+....-+|=|-.|...+. ...++.+.|.+.+
T Consensus 86 ---~~~~~~w~~---------~~~~~~~~~~~~----v~~el~~-~yg~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~l 148 (166)
T PF14488_consen 86 ---YFDPDYWDQ---------GDLDWEAERNKQ----VADELWQ-RYGHHPSFYGWYIPYEIDDYNWNAPERFALLGKYL 148 (166)
T ss_pred ---CCCchhhhc---------cCHHHHHHHHHH----HHHHHHH-HHcCCCCCceEEEecccCCcccchHHHHHHHHHHH
Confidence 223344432 22222 112222 4444443 244455788888889987654 4566777777777
Q ss_pred HHh
Q 009269 169 RAH 171 (538)
Q Consensus 169 ~~~ 171 (538)
++.
T Consensus 149 k~~ 151 (166)
T PF14488_consen 149 KQI 151 (166)
T ss_pred HHh
Confidence 663
No 37
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.80 E-value=0.0021 Score=70.78 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=74.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (538)
-..|+++++.||++|+|+-|+-|.|...+|. +|.+|=+|..=.+++|+.|.++||..++-- . .=-+|.||.
T Consensus 52 yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL----~----H~dlP~~L~ 123 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL----H----HFDTPEALH 123 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec----c----CCCCcHHHH
Confidence 4568999999999999999999999999997 678888888888999999999999877762 1 225899998
Q ss_pred ccCCCceecCCCHHHHHHHHHHHHHHH
Q 009269 102 AKKPALKLRSSDRAYLQLVERWWGVLL 128 (538)
Q Consensus 102 ~~~p~~~~R~~d~~yl~~~~~~~~~l~ 128 (538)
++ .+-.-|..=..|.++++.-++++.
T Consensus 124 ~~-GGW~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 124 SN-GDFLNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred Hc-CCCCCHHHHHHHHHHHHHHHHHhC
Confidence 73 444334444455555555554443
No 38
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.79 E-value=0.0026 Score=59.45 Aligned_cols=92 Identities=22% Similarity=0.226 Sum_probs=59.8
Q ss_pred CCcccEEEEEeeeCCCC----CCcccccCCccceEEEEeCCCcCCCCCCCeeEEEEEeec-ccceeecccCCCCC-cEEE
Q 009269 381 GQMFGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSN-ISLF 454 (538)
Q Consensus 381 gQ~~GyvlY~t~i~~~~----~~~~L~~~~v~Dra~Vfvdg~~~~~~~~~~~vg~l~r~~-~~~~~l~~~~~~~~-~~L~ 454 (538)
....|.++||+++..+. ....|.++.+++.|.||||| +.+|.-.-.. .-.+.++..-..+. ++|.
T Consensus 64 ~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG---------~~vg~~~~~~~~~~~dIt~~l~~g~~N~l~ 134 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNG---------KLVGSHEGGYTPFEFDITDYLKPGEENTLA 134 (167)
T ss_dssp STCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETT---------EEEEEEESTTS-EEEECGGGSSSEEEEEEE
T ss_pred cccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCC---------eEEeeeCCCcCCeEEeChhhccCCCCEEEE
Confidence 44689999999986552 23357789999999999999 8999865321 22344443222234 7899
Q ss_pred EEEEecCccccCCCC--CCCCCcccceee
Q 009269 455 VLVENMGRVNYGPYM--FDEKGILSSVYL 481 (538)
Q Consensus 455 ILVEN~GRvNyG~~~--~d~KGi~g~V~l 481 (538)
|.|-|...-.+-+.. ....||..+|+|
T Consensus 135 V~v~~~~~~~~~~~~~~~~~~GI~r~V~L 163 (167)
T PF02837_consen 135 VRVDNWPDGSTIPGFDYFNYAGIWRPVWL 163 (167)
T ss_dssp EEEESSSGGGCGBSSSEEE--EEESEEEE
T ss_pred EEEeecCCCceeecCcCCccCccccEEEE
Confidence 999865544332222 236899999987
No 39
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=96.30 E-value=0.016 Score=51.60 Aligned_cols=79 Identities=29% Similarity=0.340 Sum_probs=52.1
Q ss_pred CchhhcCCcccEEEEEeeeCCCCCCcc---ccc-CCccceEEEEeCCCcCCCCCCCeeEEEEE-eecc-cceeecccC-C
Q 009269 375 LSMESVGQMFGFLLYVSEFGGKDYGSS---LLI-SKVHDRAQVFISCPTEDNSGRPTYVGTIE-RWSN-RALSLPNFR-C 447 (538)
Q Consensus 375 ~smE~lgQ~~GyvlY~t~i~~~~~~~~---L~~-~~v~Dra~Vfvdg~~~~~~~~~~~vg~l~-r~~~-~~~~l~~~~-~ 447 (538)
+.+-..+...|+++||+++........ |.+ ..-.-+++||||| .++|.-. ...+ ..+.+|... .
T Consensus 25 l~~~~~g~~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG---------~~~G~~~~~~g~q~tf~~p~~il~ 95 (111)
T PF13364_consen 25 LYASDYGFHAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNG---------WFLGSYWPGIGPQTTFSVPAGILK 95 (111)
T ss_dssp TCCGCGTSSSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETT---------EEEEEEETTTECCEEEEE-BTTBT
T ss_pred eccCccccCCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECC---------EEeeeecCCCCccEEEEeCceeec
Confidence 567777888999999999964322222 222 3678899999999 8888865 2112 346666521 1
Q ss_pred CCCcEEEEEEEecCc
Q 009269 448 GSNISLFVLVENMGR 462 (538)
Q Consensus 448 ~~~~~L~ILVEN~GR 462 (538)
.....|.+|+.+||.
T Consensus 96 ~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 96 YGNNVLVVLWDNMGH 110 (111)
T ss_dssp TCEEEEEEEEE-STT
T ss_pred CCCEEEEEEEeCCCC
Confidence 235688999999985
No 40
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.17 E-value=0.0082 Score=65.50 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=75.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCc--eeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK--LVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~--fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (538)
-..++++++.||+||+|+.|+-|.|...-|..+. .|=.|..=.+++++.|.++|+..++-. -.=-+|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHH
Confidence 4567999999999999999999999999997554 888887778999999999999877762 122479999
Q ss_pred cccCCCceecCCCHHHHHHHHHHHHHHHHHhcc
Q 009269 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (538)
Q Consensus 101 ~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~ 133 (538)
.+.+.+-.-|..=..|.++++--+++.-.+++-
T Consensus 130 ~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~ 162 (460)
T COG2723 130 QKPYGGWENRETVDAFARYAATVFERFGDKVKY 162 (460)
T ss_pred hhccCCccCHHHHHHHHHHHHHHHHHhcCcceE
Confidence 985555554544445544444444443333333
No 41
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.06 E-value=0.033 Score=57.48 Aligned_cols=110 Identities=24% Similarity=0.238 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHH---cCCeEEeecCCceeeecCCCCCcccccc-
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK---LDLLVMLRPGPYICAEWDLGGFPAWLLA- 102 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~---~GL~VilrpGPyi~aEw~~GG~P~Wl~~- 102 (538)
+|.|+-+|+.|+|-||+=| |+..--..|.=-=.|..|+.+.+++|++ .||+|++.. - .-.|..+
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF----------H-YSDfwaDP 133 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF----------H-YSDFWADP 133 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec----------c-chhhccCh
Confidence 6899999999999999854 7766555555555678899999999864 799999983 1 1222221
Q ss_pred ---cCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccC
Q 009269 103 ---KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG 152 (538)
Q Consensus 103 ---~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg 152 (538)
+.|....--+-..-.+++-.|.+..+..+++ +|=-+=||||.||-.
T Consensus 134 akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~----eGi~pdmVQVGNEtn 182 (403)
T COG3867 134 AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK----EGILPDMVQVGNETN 182 (403)
T ss_pred hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH----cCCCccceEeccccC
Confidence 1222222223344467777888888888865 366777999999974
No 42
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=94.67 E-value=0.11 Score=54.35 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=69.3
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCC-------cCCC-------CCc-eeecchhhHHHHHHHHHHcCCeEEeecCCc
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNL-------HEPK-------PGK-LVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~-------hEp~-------~G~-fdF~g~~Dl~~fl~la~~~GL~VilrpGPy 86 (538)
.++.-++.|++++++|||+|-.-|-+.- .+|. +|. -.|+- |..+|+.|++.||.|.... .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~Dp---L~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDP---LEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccH---HHHHHHHHHHcCCEEEEEE-Ee
Confidence 3778899999999999999976554321 2221 111 12455 9999999999999998764 11
Q ss_pred eeeecCCC----CCcccccccCCCceecC----CCHHH----HHHHHHHHHHHHHHhccccccCCCCEEEEccc
Q 009269 87 ICAEWDLG----GFPAWLLAKKPALKLRS----SDRAY----LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (538)
Q Consensus 87 i~aEw~~G----G~P~Wl~~~~p~~~~R~----~d~~y----l~~~~~~~~~l~~~l~~~~~~~gGpII~~QVE 148 (538)
-...-..+ -.|.|+....|+..... .+..| ..+|+.|+..++..|.... +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y-----dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY-----DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC-----CCCeEEec
Confidence 00000111 25777664445543332 11122 3566666666666654321 46667776
No 43
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.50 E-value=0.22 Score=45.84 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCCEEEEccc----C-----CCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCC---C
Q 009269 28 DRLLRAKALGLNTIQTYVP----W-----NLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG---G 95 (538)
Q Consensus 28 ~~l~k~ka~G~NtV~~yv~----W-----n~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~G---G 95 (538)
+-++.+|++|+|+|.++.- | ..|.+.|+- ..+- |.++++.|++.||.|++|. +..|+.- -
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dl---lge~v~a~h~~Girv~ay~----~~~~d~~~~~~ 75 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDL---LGEQVEACHERGIRVPAYF----DFSWDEDAAER 75 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCH---HHHHHHHHHHCCCEEEEEE----eeecChHHHHh
Confidence 4567899999999998442 2 334445554 2333 5999999999999999994 3334443 3
Q ss_pred CcccccccCCCce-------------ecCCCHHHHHHHHHHHHHHHHHh
Q 009269 96 FPAWLLAKKPALK-------------LRSSDRAYLQLVERWWGVLLPKI 131 (538)
Q Consensus 96 ~P~Wl~~~~p~~~-------------~R~~d~~yl~~~~~~~~~l~~~l 131 (538)
-|.|+.+. ++-+ .-..+..|++.+..-+++++.++
T Consensus 76 HPeW~~~~-~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 76 HPEWFVRD-ADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred CCceeeEC-CCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 68888863 3322 11234578777766666665544
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=93.54 E-value=0.22 Score=47.38 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=46.5
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcC-------CCCCce-----eecchhhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHE-------PKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-------p~~G~f-----dF~g~~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
-+.+.+.|.-+|++|+|+|.+-=++.... -.+..| .|....|++++++.|+++||+||+..=|-=+
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 44567778889999999999854433332 112222 4556689999999999999999999544333
No 45
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.70 E-value=2.1 Score=48.98 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=40.7
Q ss_pred HHHH-HHHHHcCCCEEEE-cccCCCcCC----CCC-----ceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 27 EDRL-LRAKALGLNTIQT-YVPWNLHEP----KPG-----KLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 27 ~~~l-~k~ka~G~NtV~~-yv~Wn~hEp----~~G-----~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.++| .-+|++|+|+|.+ +|+..-... .+- .-.|....||.+|++.|+++||.|||..
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4454 7889999999999 776532111 000 1134556799999999999999999983
No 46
>PRK09936 hypothetical protein; Provisional
Probab=91.86 E-value=2.4 Score=44.01 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=46.0
Q ss_pred CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch-hhHHHHHHHHHHcCCeEEee
Q 009269 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI-ADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 20 r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~-~Dl~~fl~la~~~GL~Vilr 82 (538)
+++++.|++.++.+|+.||+|+-+ -|... |.=||.+. --|.+.++.|++.||.|+|.
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 688999999999999999998754 55444 11177653 35899999999999999987
No 47
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.47 E-value=5.6 Score=40.32 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=75.9
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee-cCCceeeecCCCCCccccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGFPAWLL 101 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr-pGPyi~aEw~~GG~P~Wl~ 101 (538)
...|++.|+.++++|++.|++.+ +..| ..+...+++. .++.++.++++++||.|..- +++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWSR-EQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCCH-HHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 46899999999999999999953 2222 2234445543 46899999999999987532 111 01111
Q ss_pred ccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCC-Cc-------HHHHHHHHHHHHHhcC
Q 009269 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DD-------KEYLHHLVTLARAHLG 173 (538)
Q Consensus 102 ~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~-~~-------~~y~~~L~~~~~~~~G 173 (538)
+-+.|+.-+++....+++.+...+.+ |.++|.+- ..++. ++ .+ .+.++.|.+.+++ .|
T Consensus 81 -------l~~~~~~~r~~~~~~~~~~i~~a~~l----G~~~v~~~-~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~-~G 146 (279)
T TIGR00542 81 -------LGSKDKAVRQQGLEIMEKAIQLARDL----GIRTIQLA-GYDVY-YEEHDEETRRRFREGLKEAVELAAR-AQ 146 (279)
T ss_pred -------CCCcCHHHHHHHHHHHHHHHHHHHHh----CCCEEEec-Ccccc-cCcCCHHHHHHHHHHHHHHHHHHHH-cC
Confidence 12235655666666667777766665 66776552 11111 11 11 1345566666666 57
Q ss_pred CceEE
Q 009269 174 KDIIL 178 (538)
Q Consensus 174 ~~v~l 178 (538)
+.+-|
T Consensus 147 v~l~l 151 (279)
T TIGR00542 147 VTLAV 151 (279)
T ss_pred CEEEE
Confidence 65544
No 48
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=91.20 E-value=0.38 Score=53.15 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=46.9
Q ss_pred ecCCCCC----HhhH---HHHHHHHHHcCCCEEEE-cccCCC-----cCCCCCc-e-------------eecchhhHHHH
Q 009269 16 LHYFRIL----PQHW---EDRLLRAKALGLNTIQT-YVPWNL-----HEPKPGK-L-------------VFSGIADLVSF 68 (538)
Q Consensus 16 ~Hy~r~p----~~~W---~~~l~k~ka~G~NtV~~-yv~Wn~-----hEp~~G~-f-------------dF~g~~Dl~~f 68 (538)
+|.|.|+ .+.| .+.|.-++++|+|+|-+ +++-+. |--.+-. | .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4666665 2445 46778889999999988 454332 2211111 2 23456799999
Q ss_pred HHHHHHcCCeEEeec
Q 009269 69 LKLCQKLDLLVMLRP 83 (538)
Q Consensus 69 l~la~~~GL~Vilrp 83 (538)
++.|++.||+||+..
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999984
No 49
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=90.92 E-value=0.71 Score=48.60 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=46.7
Q ss_pred HhhHHHHHHHHHHcCCCEEEEc-------ccCCCcCCCCCceeec--chhhHHHHHHHHHHcCCeEEeec
Q 009269 23 PQHWEDRLLRAKALGLNTIQTY-------VPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~y-------v~Wn~hEp~~G~fdF~--g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
++.-+..|+.+++.|+|+|-+- |.+..-.|..-+..-. ...|+.++++.++++|+++|.|.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 5678899999999999999874 4565555443333222 23799999999999999999994
No 50
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=90.87 E-value=1.3 Score=49.21 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=42.1
Q ss_pred EeecCCCCCHhhHHHHHHHHH-HcCCCEEEEc-cc---CCCc-C-CCCC--ceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 14 GDLHYFRILPQHWEDRLLRAK-ALGLNTIQTY-VP---WNLH-E-PKPG--KLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 14 G~~Hy~r~p~~~W~~~l~k~k-a~G~NtV~~y-v~---Wn~h-E-p~~G--~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
|+-|..-...+.|+..|+.++ ++||..|++. ++ .... | ...| .|||+. ||.+++...++||+..+..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~---lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTY---LDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HH---HHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHH---HHHHHHHHHHcCCEEEEEEE
Confidence 333333455788999999886 8899999984 22 1111 1 1233 299999 99999999999998877743
No 51
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.69 E-value=1 Score=48.99 Aligned_cols=140 Identities=26% Similarity=0.290 Sum_probs=86.2
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcc-------------cCCCcCCCCCceee-cchhhHHHHHHHHHHcCCeEEeecCCce
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYV-------------PWNLHEPKPGKLVF-SGIADLVSFLKLCQKLDLLVMLRPGPYI 87 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv-------------~Wn~hEp~~G~fdF-~g~~Dl~~fl~la~~~GL~VilrpGPyi 87 (538)
.+.+-.+.|..++++|||||-.-| +|..-- ||++-= .|..=|...|++|++.||.|+...=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 367778999999999999986422 233332 444311 1222388899999999999999987777
Q ss_pred eeecCCC---CCcccccccCCCceecCCC----H----HHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCC
Q 009269 88 CAEWDLG---GFPAWLLAKKPALKLRSSD----R----AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD 156 (538)
Q Consensus 88 ~aEw~~G---G~P~Wl~~~~p~~~~R~~d----~----~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~ 156 (538)
.|-=..- --|.|+..+.|+.....++ . ...-+|+.|+..++-.+.... .|-++|.+-=++ |..
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y-----dvDGIQfDd~fy-~~~ 213 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY-----DVDGIQFDDYFY-YPI 213 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC-----CCCceecceeec-ccC
Confidence 6531111 2566777755555443322 1 235678888777766554432 677799987766 433
Q ss_pred cHHHHHHHHHHHH
Q 009269 157 DKEYLHHLVTLAR 169 (538)
Q Consensus 157 ~~~y~~~L~~~~~ 169 (538)
+-.|...-...++
T Consensus 214 ~~gy~~~~~~~y~ 226 (418)
T COG1649 214 PFGYDPDTVTLYR 226 (418)
T ss_pred ccccCchHHHHHH
Confidence 3333333333333
No 52
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.34 E-value=0.18 Score=55.11 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=104.9
Q ss_pred ceecCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCc-CCC---CCceee-cchhhHHHHHHHHHHcC
Q 009269 2 FRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLH-EPK---PGKLVF-SGIADLVSFLKLCQKLD 76 (538)
Q Consensus 2 f~~dG~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~h-Ep~---~G~fdF-~g~~Dl~~fl~la~~~G 76 (538)
|.++++.+..++..--+.++-.++.+++|+-++.+|++++++.+ +- |+- +|.-+- ++.--++.|++.|..++
T Consensus 4 F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~fi---LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~ 80 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLFI---LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLD 80 (587)
T ss_pred EEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEEE---ecCcchhhhhceecccccHHHHHHHhhhcccCc
Confidence 66777777777666666677777888999999999999999963 33 552 332221 22334899999999999
Q ss_pred CeEEeecCCceeeecCCCCC---cccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCC
Q 009269 77 LLVMLRPGPYICAEWDLGGF---PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (538)
Q Consensus 77 L~VilrpGPyi~aEw~~GG~---P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~ 153 (538)
|+|+++- |.+-=.+||- -.|.-..+|+-.+ -|+.+...-++|.+.+++- ++....|.+|-+-||.=.
T Consensus 81 lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~-----yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 81 LKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKP-----YKLDPTIAGWALRNEPLV 150 (587)
T ss_pred ceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhh-----hccChHHHHHHhcCCccc
Confidence 9999883 5542245663 2344333444322 2566666677777777773 344568999999999221
Q ss_pred --CCCcHHHHHHHHHHHH
Q 009269 154 --YGDDKEYLHHLVTLAR 169 (538)
Q Consensus 154 --~~~~~~y~~~L~~~~~ 169 (538)
-.++..++.|++.++-
T Consensus 151 ~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 151 EAPISVNNFWDWSGEMYA 168 (587)
T ss_pred cccCChhHHHHHHHHHHH
Confidence 1267789999999873
No 53
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=90.07 E-value=1.6 Score=41.27 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=74.9
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCCcee
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKL 109 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~ 109 (538)
|+.++++|+..|+....+....... ..+++++.++++++||.|..--.+ .. + . .+....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~-~~--~---~--------~~~~~~ 59 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPP-TN--F---W--------SPDEEN 59 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEE-ES--S---S--------CTGTTS
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecc-cc--c---c--------cccccc
Confidence 6789999999999965533322221 346999999999999996654111 10 0 0 111112
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccc--cccCCCC------CcHHHHHHHHHHHHHhcCCceEEEEe
Q 009269 110 RSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE--NEFGSYG------DDKEYLHHLVTLARAHLGKDIILYTT 181 (538)
Q Consensus 110 R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVE--NEyg~~~------~~~~y~~~L~~~~~~~~G~~v~l~t~ 181 (538)
++..+. .+.....+...+...+.+ |.+.+.+..- +...... .-.+.++.|.+.+.+ .|+.+.+-+.
T Consensus 60 ~~~~~~-r~~~~~~~~~~i~~a~~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~i~lE~~ 133 (213)
T PF01261_consen 60 GSANDE-REEALEYLKKAIDLAKRL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEE-YGVRIALENH 133 (213)
T ss_dssp TTSSSH-HHHHHHHHHHHHHHHHHH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHH-HTSEEEEE-S
T ss_pred cCcchh-hHHHHHHHHHHHHHHHHh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhh-hcceEEEecc
Confidence 333434 666677777777777766 6677777754 2222221 123466777777777 5777665543
No 54
>PRK01060 endonuclease IV; Provisional
Probab=89.92 E-value=5.4 Score=40.34 Aligned_cols=93 Identities=17% Similarity=0.325 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeE---EeecCCceeeecCCCCCcccccc
Q 009269 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV---MLRPGPYICAEWDLGGFPAWLLA 102 (538)
Q Consensus 26 W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~V---ilrpGPyi~aEw~~GG~P~Wl~~ 102 (538)
+++.|+.++++|+++|++.+.- -+.-.++.++ ..+++++-++++++||.+ .+ -+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~-h~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLE---ELNIEAFKAACEKYGISPEDILV-HAPYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEE-ecceE------------e--
Confidence 8899999999999999996531 1211121221 224888999999999984 33 23332 1
Q ss_pred cCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEc
Q 009269 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (538)
Q Consensus 103 ~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~Q 146 (538)
.+-+.|+..+++..+.+++.+...+.+ |.++|-+.
T Consensus 75 -----nl~~~d~~~r~~s~~~~~~~i~~A~~l----ga~~vv~h 109 (281)
T PRK01060 75 -----NLGNPNKEILEKSRDFLIQEIERCAAL----GAKLLVFH 109 (281)
T ss_pred -----cCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEc
Confidence 123457777777777777777776654 55555553
No 55
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=89.44 E-value=8.6 Score=38.28 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.+++.+++++++|++.|+...++ ..++..+.++++++||.|..-
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEEE
Confidence 58899999999999999985432 125789999999999998653
No 56
>PRK14706 glycogen branching enzyme; Provisional
Probab=88.98 E-value=8.3 Score=44.50 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=36.9
Q ss_pred HHHHHHcCCCEEEE-ccc-------CCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 30 LLRAKALGLNTIQT-YVP-------WNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 30 l~k~ka~G~NtV~~-yv~-------Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
+.-+|++|+|+|+. +|. |...-.- .=.-.|....|+.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999997 442 3321100 001123446799999999999999999983
No 57
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=88.70 E-value=0.19 Score=56.92 Aligned_cols=76 Identities=29% Similarity=0.618 Sum_probs=44.4
Q ss_pred EEeecCCCCCCC--CC-CCCCCCCCCCCCCCCcCcCCCCccccCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCcccCcc
Q 009269 270 LYMAHGGTNFGF--YN-GANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFKAIRRVVEKFSPASLPSVLPDNEKAGFG 346 (538)
Q Consensus 270 ~YM~hGGTNfG~--~~-Ga~~~~~~~~~~p~~TSYDY~APi~E~G~~t~~Ky~~lr~~i~~~~~~~~p~~P~~~~~~~yg 346 (538)
.+.-+||+..-+ .. |-|.+-....| .+|||||||||+ |..++|||.+++.++..|.--...-+-..+....||
T Consensus 272 ~fls~ggs~vNyYM~hGGTNFGrt~G~~--~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~kyg 347 (649)
T KOG0496|consen 272 RFLSKGGSSVNYYMYHGGTNFGRTNGPF--IATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCEPALVAGDITTAKYG 347 (649)
T ss_pred HHHhcCccceEEEEeecccCCCcccCcc--cccccccccccc--hhhcCCCccccccchhhhhhcCccccccCccccccc
Confidence 344567765421 12 44433111222 479999999999 998899999999888877432222222223344555
Q ss_pred cee
Q 009269 347 PIQ 349 (538)
Q Consensus 347 ~v~ 349 (538)
..+
T Consensus 348 ~~~ 350 (649)
T KOG0496|consen 348 NLR 350 (649)
T ss_pred chh
Confidence 544
No 58
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=88.45 E-value=9 Score=38.59 Aligned_cols=130 Identities=21% Similarity=0.199 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccccc
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAK 103 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~ 103 (538)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++.++++++||.|..- | .++.-.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~-----~----~~~~~~----- 78 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSM-----C----LSGHRR----- 78 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEE-----e----cccccC-----
Confidence 58999999999999999999643 2222 01122333 346899999999999987532 1 011100
Q ss_pred CCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCC------cHHHHHHHHHHHHHhcCCceE
Q 009269 104 KPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD------DKEYLHHLVTLARAHLGKDII 177 (538)
Q Consensus 104 ~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~------~~~y~~~L~~~~~~~~G~~v~ 177 (538)
..+.+.|+.-.+...+.+++++...+.+ |.++|-+---..+..... -.+.++.|.+.+.+ .|+.+-
T Consensus 79 ---~~~~~~d~~~r~~~~~~~~~~i~~a~~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~l~ 150 (284)
T PRK13210 79 ---FPFGSRDPATRERALEIMKKAIRLAQDL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAA-AQVMLA 150 (284)
T ss_pred ---cCCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHH-hCCEEE
Confidence 1122446655555566666666666554 556665421101100111 12456667777766 566543
Q ss_pred E
Q 009269 178 L 178 (538)
Q Consensus 178 l 178 (538)
+
T Consensus 151 l 151 (284)
T PRK13210 151 V 151 (284)
T ss_pred E
Confidence 3
No 59
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=88.41 E-value=0.63 Score=46.63 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCC--cee-------ecchhhHHHHHHHHHHcCCeEEeec
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLV-------FSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G--~fd-------F~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.+.|.-+|++|+|+|.+-=++......-| .-| |....|+.++++.|+++||+||+-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 56788999999999999544443221111 112 2345699999999999999999983
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=88.15 E-value=0.81 Score=48.98 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred EEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceee
Q 009269 12 IGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (538)
Q Consensus 12 ~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~a 89 (538)
+|=++.+...+.+.....|++|+++||..|-| ++|.|+...=+. ...+..++++|+++||.|++...|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 45567776778999999999999999988777 688888433222 2358999999999999999997765543
No 61
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=87.48 E-value=1.3 Score=51.64 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=45.3
Q ss_pred HhhHHHHHHHHHHcCCCEEEE-ccc-------CCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeecCC
Q 009269 23 PQHWEDRLLRAKALGLNTIQT-YVP-------WNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGP 85 (538)
.+.|++.|.-+|++|+|+|++ .|+ |.++-.. .=.-.|....||.+|++.|+++||.|||..=|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 455888999999999999998 332 4433110 00113555679999999999999999998433
No 62
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.45 E-value=9.6 Score=44.60 Aligned_cols=51 Identities=20% Similarity=0.441 Sum_probs=38.0
Q ss_pred HHHHHHcCCCEEEE-ccc-------CCCcCCCCCce-----eecchhhHHHHHHHHHHcCCeEEeec
Q 009269 30 LLRAKALGLNTIQT-YVP-------WNLHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 30 l~k~ka~G~NtV~~-yv~-------Wn~hEp~~G~f-----dF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
|.-+|++|+|+|.. +|+ |.+ .+..| .|....|+.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY---~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGY---QPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCC---CcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 47789999999998 553 222 11111 35556799999999999999999983
No 63
>PRK10150 beta-D-glucuronidase; Provisional
Probab=87.34 E-value=2.1 Score=48.70 Aligned_cols=91 Identities=19% Similarity=0.121 Sum_probs=56.6
Q ss_pred cccEEEEEeeeCCCC----CCcccccCCccceEEEEeCCCcCCCCCCCeeEEEEEeec-ccceeecccCCCC-CcEEEEE
Q 009269 383 MFGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGS-NISLFVL 456 (538)
Q Consensus 383 ~~GyvlY~t~i~~~~----~~~~L~~~~v~Dra~Vfvdg~~~~~~~~~~~vg~l~r~~-~~~~~l~~~~~~~-~~~L~IL 456 (538)
..|..+|++++..+. ....|.+..+.-.|.||||| +.||.-+--. .-.+.|+..-..+ .++|.|.
T Consensus 63 ~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG---------~~vg~~~~~~~~f~~DIT~~l~~G~~n~L~V~ 133 (604)
T PRK10150 63 YVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNG---------QEVMEHKGGYTPFEADITPYVYAGKSVRITVC 133 (604)
T ss_pred CcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECC---------EEeeeEcCCccceEEeCchhccCCCceEEEEE
Confidence 458899999987542 23467799999999999999 7888653211 1234443211112 3489999
Q ss_pred EEecCcc---ccCCCC---------------CCCCCcccceeeC
Q 009269 457 VENMGRV---NYGPYM---------------FDEKGILSSVYLG 482 (538)
Q Consensus 457 VEN~GRv---NyG~~~---------------~d~KGi~g~V~l~ 482 (538)
|.|.-+. ..|... ...-||..+|.|-
T Consensus 134 v~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~ 177 (604)
T PRK10150 134 VNNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLY 177 (604)
T ss_pred EecCCCcccCCCCccccCCccccccccccccccccCCCceEEEE
Confidence 9874321 112111 1256999999984
No 64
>PRK12568 glycogen branching enzyme; Provisional
Probab=86.87 E-value=19 Score=42.19 Aligned_cols=57 Identities=18% Similarity=0.340 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEE-ccc-------CCCcCCCCCce----eecchhhHHHHHHHHHHcCCeEEeecCC
Q 009269 27 EDRLLRAKALGLNTIQT-YVP-------WNLHEPKPGKL----VFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp~~G~f----dF~g~~Dl~~fl~la~~~GL~VilrpGP 85 (538)
++.|.-+|++|+|+|+. +|+ |.+.- -|-| .|....|+.+|++.|+++||.|||..=|
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34468889999999998 453 43211 0111 3556679999999999999999998444
No 65
>PRK12313 glycogen branching enzyme; Provisional
Probab=85.31 E-value=1.8 Score=49.63 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHHHcCCCEEEE-ccc-------CCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 30 LLRAKALGLNTIQT-YVP-------WNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 30 l~k~ka~G~NtV~~-yv~-------Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
|.-+|++|+|+|.. +|+ |.+.-.. .=.-.|....|+.+|++.|+++||.|||..
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58999999999997 553 3221100 001135567799999999999999999983
No 66
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.60 E-value=1.8 Score=48.80 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEE-ccc-------CCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 27 EDRLLRAKALGLNTIQT-YVP-------WNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.++|.-+|++|+|+|.+ +|+ |.+.-.. .=.-.|....|+.+|++.|+++||.|||..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788999999999998 452 3322110 001134556799999999999999999983
No 67
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=84.12 E-value=3.3 Score=42.08 Aligned_cols=52 Identities=15% Similarity=0.368 Sum_probs=38.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
+...++-|+.+|++||++|++ ..|..+.+- .+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~~-~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLPE-EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS---H-HHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCCH-HHHHHHHHHHHHCCCEEeeccc
Confidence 567789999999999999998 455555543 3578999999999999999966
No 68
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=84.12 E-value=2.7 Score=46.90 Aligned_cols=114 Identities=10% Similarity=0.161 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHcCCCEEEEcccCCCcCCC-C--CceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccc
Q 009269 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPK-P--GKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (538)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~--G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (538)
.++++++.||++|++.-|.-|.|...=|. + +..+-.|..=...+|+...++||...|- +. -| .+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VT----Lf-Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVT----LF-HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEE----Ee-cC---CCCHHHH
Confidence 57899999999999999999999999886 3 5678888666788899999999987665 22 23 5899999
Q ss_pred ccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEc
Q 009269 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (538)
Q Consensus 102 ~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~Q 146 (538)
+++.+..-+.-=..|.++++-=|++...+++-+--=|.+.|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeee
Confidence 866665444434456666666566666666554322445555544
No 69
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=83.05 E-value=2.3 Score=48.53 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCEEEE-ccc---------------CCCcCCC----CCcee----ec--chhhHHHHHHHHHHcCCeEEe
Q 009269 28 DRLLRAKALGLNTIQT-YVP---------------WNLHEPK----PGKLV----FS--GIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 28 ~~l~k~ka~G~NtV~~-yv~---------------Wn~hEp~----~G~fd----F~--g~~Dl~~fl~la~~~GL~Vil 81 (538)
+.|.-+|++|+|+|.+ +|+ |.+.-.. .+.|- |. ...|+.+|++.|+++||.|||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 4589999999999998 453 3332100 00110 10 136899999999999999999
Q ss_pred ec
Q 009269 82 RP 83 (538)
Q Consensus 82 rp 83 (538)
..
T Consensus 248 Dv 249 (605)
T TIGR02104 248 DV 249 (605)
T ss_pred EE
Confidence 83
No 70
>PLN02960 alpha-amylase
Probab=83.04 E-value=2.7 Score=49.82 Aligned_cols=57 Identities=25% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCEEEE-ccc-------CCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 27 EDRLLRAKALGLNTIQT-YVP-------WNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
++.|.-+|++|+|+|++ .|+ |.+.-.- .=.-.|....|+.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45699999999999998 553 4322100 001134456799999999999999999984
No 71
>PRK09505 malS alpha-amylase; Reviewed
Probab=81.71 E-value=3.2 Score=48.12 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcCCCEEEE-cccCCCcCCC----CC------------------ceeecchhhHHHHHHHHHHcCCeEEe
Q 009269 25 HWEDRLLRAKALGLNTIQT-YVPWNLHEPK----PG------------------KLVFSGIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~----~G------------------~fdF~g~~Dl~~fl~la~~~GL~Vil 81 (538)
-+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....|++++++.|+++||+||+
T Consensus 231 Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~Vil 310 (683)
T PRK09505 231 GLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILF 310 (683)
T ss_pred HHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3577889999999999987 4543333211 11 11344567999999999999999999
Q ss_pred ec
Q 009269 82 RP 83 (538)
Q Consensus 82 rp 83 (538)
..
T Consensus 311 D~ 312 (683)
T PRK09505 311 DV 312 (683)
T ss_pred EE
Confidence 84
No 72
>PRK10785 maltodextrin glucosidase; Provisional
Probab=81.66 E-value=3 Score=47.58 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCEEEE-cccCC--CcCCCCCce-----eecchhhHHHHHHHHHHcCCeEEee
Q 009269 26 WEDRLLRAKALGLNTIQT-YVPWN--LHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 26 W~~~l~k~ka~G~NtV~~-yv~Wn--~hEp~~G~f-----dF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
..+.|.-+|++|+|+|-+ +|+=+ .|---...| .|....|+.+|++.|++.||+|||.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD 245 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLD 245 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 467888999999999998 56532 111111111 2445679999999999999999997
No 73
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=81.08 E-value=2.6 Score=47.56 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=42.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEE-cccCCCcCCCCCce---e-------ecchhhHHHHHHHHHHcCCeEEeec
Q 009269 23 PQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKL---V-------FSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~f---d-------F~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
-.-+.+.|.-+|++|+|+|-+ +++-+-.. ..-| | |....|+.++++.|+++||+|||..
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 345678899999999999988 44432111 0122 1 4456799999999999999999983
No 74
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=81.00 E-value=3.8 Score=42.52 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=49.6
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecch--hhHHHHHHHHHHcCCeEEeecCCceee
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~a 89 (538)
...+...+.++++|+.||.+=.+.+-...+... -+.|.|+-. -|..++++..++.|++|++..-|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 347788999999999997665544443333322 134555432 389999999999999999998787753
No 75
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=80.37 E-value=46 Score=33.57 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=41.2
Q ss_pred CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHc-CCeEEee
Q 009269 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKL-DLLVMLR 82 (538)
Q Consensus 20 r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~-GL~Vilr 82 (538)
.++ ..|++.|+.+|++|++.|++.+........+ .....+++++.++++++ ++.+.+-
T Consensus 7 ~~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 7 AAG-FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 344 7899999999999999999976432111111 11346799999999999 7666554
No 76
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=80.08 E-value=34 Score=34.20 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=37.6
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEe
Q 009269 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vil 81 (538)
+.|-++| ++++|++++++||+.|++.. +. ..|++++.++++++||.|..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 3444444 78889999999999999932 11 14689999999999999864
No 77
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.07 E-value=36 Score=34.35 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee-cCCceeeecCCCCCcccccc
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGFPAWLLA 102 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr-pGPyi~aEw~~GG~P~Wl~~ 102 (538)
..|++.++.++++|+..|++.+. ..++ ....++++ ..+++++.++++++||.|..- ++.. ..++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC-----
Confidence 37999999999999999999532 1111 01112333 236899999999999987532 1110 0010
Q ss_pred cCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCC--------cHHHHHHHHHHHHHhcCC
Q 009269 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD--------DKEYLHHLVTLARAHLGK 174 (538)
Q Consensus 103 ~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~--------~~~y~~~L~~~~~~~~G~ 174 (538)
+-+.++.-++.....+++.+...+.+ |.++|.+.-. .. .+.. -.+.++.|.+.+++ .|+
T Consensus 86 ------~~~~~~~~r~~~~~~~~~~i~~a~~l----G~~~i~~~~~-~~-~~~~~~~~~~~~~~~~l~~l~~~A~~-~GV 152 (283)
T PRK13209 86 ------LGSEDDAVRAQALEIMRKAIQLAQDL----GIRVIQLAGY-DV-YYEQANNETRRRFIDGLKESVELASR-ASV 152 (283)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEECCc-cc-cccccHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence 11345555566666666666666655 6677655310 00 0111 12355666666666 466
Q ss_pred ceEE
Q 009269 175 DIIL 178 (538)
Q Consensus 175 ~v~l 178 (538)
.+-+
T Consensus 153 ~i~i 156 (283)
T PRK13209 153 TLAF 156 (283)
T ss_pred EEEE
Confidence 5433
No 78
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=80.05 E-value=4 Score=45.94 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHcCCCEEEE-cccCCCcCCCCCce----------eecchhhHHHHHHHHHHcCCeEEee
Q 009269 24 QHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKL----------VFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~f----------dF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.-+.+.|.-+|++|+|+|-+ +|+ .... ...-| .|....|+.++++.|+++||+||+.
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~-~~~~-~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFF-QSPL-RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCc-CCCC-CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45677899999999999988 443 1100 01112 2445679999999999999999996
No 79
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=79.95 E-value=4.2 Score=45.98 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHcCCCEEEE-cccCCCcCCC-CCce----------eecchhhHHHHHHHHHHcCCeEEee
Q 009269 25 HWEDRLLRAKALGLNTIQT-YVPWNLHEPK-PGKL----------VFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~-~G~f----------dF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
-+.++|.-+|++|+++|-+ +|+-. |. ..-| .|....|+.++++.|+++||+||+.
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD 100 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILD 100 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4568899999999999988 45421 11 1122 2445679999999999999999997
No 80
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.84 E-value=65 Score=32.28 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEe
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vil 81 (538)
..|++.|+.++++|++.|++..... |+-.+ +++ ..+++++-++++++||.|+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEE
Confidence 3599999999999999999832110 11011 121 24689999999999998754
No 81
>PLN02361 alpha-amylase
Probab=78.43 E-value=5.2 Score=43.57 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCC---CCCc-e----eecchhhHHHHHHHHHHcCCeEEeec
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEP---KPGK-L----VFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp---~~G~-f----dF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.+.|.-++++|+++|-+.=+.....+ .+.. | .|....||.++++.|+++||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 56777889999999998544432222 1222 2 24456799999999999999999974
No 82
>PRK14705 glycogen branching enzyme; Provisional
Probab=77.40 E-value=4.8 Score=49.56 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------CCCcC--CCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 28 DRLLRAKALGLNTIQT-YVP-------WNLHE--PKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 28 ~~l~k~ka~G~NtV~~-yv~-------Wn~hE--p~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+.|.-+|++|+|+|+. +|+ |.+.- ...=.-.|....|+.+|++.|+++||.|||.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3468899999999998 553 43221 0000113556679999999999999999998
No 83
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=76.83 E-value=11 Score=42.69 Aligned_cols=110 Identities=21% Similarity=0.295 Sum_probs=76.7
Q ss_pred ceecCEeeEEEEEeecCC-----CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcC
Q 009269 2 FRKDGEPFRIIGGDLHYF-----RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (538)
Q Consensus 2 f~~dG~p~~i~sG~~Hy~-----r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~G 76 (538)
|.++|.|.++-++.--+. |...+.-+-.|+.++++|+|++++ |. -|. ..-+.|-++|.+.|
T Consensus 330 fkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGv------YEsd~FY~lad~lG 395 (867)
T KOG2230|consen 330 FKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGV------YESDYFYQLADSLG 395 (867)
T ss_pred EEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Ccc------ccchhHHHHhhhcc
Confidence 789999999988875542 334555677899999999999998 33 122 33689999999999
Q ss_pred CeEEeecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccc
Q 009269 77 LLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENE 150 (538)
Q Consensus 77 L~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENE 150 (538)
|.|--.. =+.||- +| .+..|++.|+.=.+.-+.+|.. +..||.+-=.||
T Consensus 396 ilVWQD~-MFACAl-------------YP------t~~eFl~sv~eEV~yn~~Rls~-----HpSviIfsgNNE 444 (867)
T KOG2230|consen 396 ILVWQDM-MFACAL-------------YP------TNDEFLSSVREEVRYNAMRLSH-----HPSVIIFSGNNE 444 (867)
T ss_pred ceehhhh-HHHhhc-------------cc------CcHHHHHHHHHHHHHHHHhhcc-----CCeEEEEeCCCc
Confidence 9764331 124442 34 3678888888766666666654 457887766555
No 84
>PRK09989 hypothetical protein; Provisional
Probab=76.37 E-value=48 Score=33.13 Aligned_cols=44 Identities=16% Similarity=0.324 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
..+++|++++++||..|++..+|. .+.+++.++++++||.|..-
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~~ 59 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLALF 59 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEEe
Confidence 467899999999999999954332 23678888899999998764
No 85
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=75.73 E-value=9.3 Score=39.74 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=52.2
Q ss_pred CCCCHhhHHHHHHHHHHcCCC--EEEEcccCCCcCCCCCceeecc--hhhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 19 FRILPQHWEDRLLRAKALGLN--TIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 19 ~r~p~~~W~~~l~k~ka~G~N--tV~~yv~Wn~hEp~~G~fdF~g--~~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
.....+.-.+.++++++.|+. +|-+-..|- ..-|.|.|+- .-|..++++..++.|+++++-.=|+|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~ 95 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFIN 95 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeC
Confidence 456788899999999999965 666665663 3456666653 348999999999999999999777775
No 86
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=75.68 E-value=19 Score=33.72 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEccc--CCCcCC----CCCceeecchhhHHHHHHHHHHcCCeEEee-cCCceeeecCCCCC
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVP--WNLHEP----KPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGF 96 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~--Wn~hEp----~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr-pGPyi~aEw~~GG~ 96 (538)
.+.++..+.+++.|+..+....+ |..... .+.. .-.....+.+.+++|++.|...+.- +|. .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~ 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------Y 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------E
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------c
Confidence 45677888899999997776544 443211 1111 1122346999999999999976554 332 0
Q ss_pred cccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHHHHHHHHHHHH
Q 009269 97 PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARA 170 (538)
Q Consensus 97 P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y~~~L~~~~~~ 170 (538)
+.+ + .......++.+.+.+++++++.+++ | +.+-+||..+.......-.+.+.+++++
T Consensus 96 ~~~-----~----~~~~~~~~~~~~~~l~~l~~~a~~~----g---v~i~lE~~~~~~~~~~~~~~~~~~~l~~ 153 (213)
T PF01261_consen 96 PSG-----P----EDDTEENWERLAENLRELAEIAEEY----G---VRIALENHPGPFSETPFSVEEIYRLLEE 153 (213)
T ss_dssp SSS-----T----TSSHHHHHHHHHHHHHHHHHHHHHH----T---SEEEEE-SSSSSSSEESSHHHHHHHHHH
T ss_pred ccc-----c----CCCHHHHHHHHHHHHHHHHhhhhhh----c---ceEEEecccCccccchhhHHHHHHHHhh
Confidence 000 0 1223356777778888888888775 2 4578889887654221013444555555
No 87
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=73.87 E-value=7.4 Score=40.80 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=50.7
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCC--ceeecchh--hHHHHHHHHHHcCCeEEeecCCcee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLVFSGIA--DLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G--~fdF~g~~--Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
..++-.+.++++++.||.+=.+.+-|.... ..+ .|+|+-.+ |..++|+..++.|++|++-.=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 467789999999999988777766665443 234 66665433 8999999999999999998666663
No 88
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=73.80 E-value=9.4 Score=46.46 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=60.1
Q ss_pred ccEEEEEeeeCCCC----CCcccccCCccceEEEEeCCCcCCCCCCCeeEEEEEeec-ccceeecccCCCCCcEEEEEEE
Q 009269 384 FGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSNISLFVLVE 458 (538)
Q Consensus 384 ~GyvlY~t~i~~~~----~~~~L~~~~v~Dra~Vfvdg~~~~~~~~~~~vg~l~r~~-~~~~~l~~~~~~~~~~L~ILVE 458 (538)
.|-.+||+++..+. ....|.+.+|.-.|+||||| ++||.-.... ...+.++..-..+.++|.|.|.
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG---------~~VG~~~g~~~pfefDIT~~l~~G~N~LaV~V~ 178 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNG---------QYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVM 178 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECC---------EEeccccCCCccEEEEcchhhCCCccEEEEEEE
Confidence 35679999986542 23467799999999999999 7777532211 1234443211124589999998
Q ss_pred ecCccccCCCCC--CCCCcccceeeCCE---EecCeEEE
Q 009269 459 NMGRVNYGPYMF--DEKGILSSVYLGGK---VLRGWKMI 492 (538)
Q Consensus 459 N~GRvNyG~~~~--d~KGi~g~V~l~~~---~L~~W~~~ 492 (538)
+..--.|-...+ -.-||..+|+|-.. -+.+..+.
T Consensus 179 ~~~d~s~le~qd~w~~sGI~R~V~L~~~p~~~I~d~~v~ 217 (1021)
T PRK10340 179 QWADSTYLEDQDMWWLAGIFRDVYLVGKPLTHINDFTVR 217 (1021)
T ss_pred ecCCCCccccCCccccccccceEEEEEeCCceEEeeEEE
Confidence 543322211111 13799999999644 23444443
No 89
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=73.66 E-value=9.2 Score=43.93 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=42.5
Q ss_pred HhhHHHHHHHHHHcCCCEEEE-ccc-------CCCcCCCCCce----eecchhhHHHHHHHHHHcCCeEEee
Q 009269 23 PQHWEDRLLRAKALGLNTIQT-YVP-------WNLHEPKPGKL----VFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp~~G~f----dF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.+.-.+.|.-+|+||+++|+. +|. |.+--. |-| .|...-|+.+||+.|+++||-|||.
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~--g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGT--GYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcc--eeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 556678899999999999998 332 443210 011 2333469999999999999999998
No 90
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=73.65 E-value=45 Score=35.36 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=56.6
Q ss_pred ecCCCC---CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch--hhH--HHHHHHHHHcCCeEEeecCCcee
Q 009269 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADL--VSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 16 ~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~Dl--~~fl~la~~~GL~VilrpGPyi~ 88 (538)
+|..|+ ..+..++.++++++.||.+=.+.+-+..+.. -+.|.|+.. -|. .++++..++.|++|++-.=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 344454 3778899999999999987776666555543 366666643 377 99999999999999999999998
Q ss_pred ee
Q 009269 89 AE 90 (538)
Q Consensus 89 aE 90 (538)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 91
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=73.54 E-value=28 Score=37.70 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=63.5
Q ss_pred CCCCCHhhHHHHHHHHHHcCCCEEEE-------cccCCCcCCCCCceeecchhh-HHHHHHHHHHcCCeEEeecCCceee
Q 009269 18 YFRILPQHWEDRLLRAKALGLNTIQT-------YVPWNLHEPKPGKLVFSGIAD-LVSFLKLCQKLDLLVMLRPGPYICA 89 (538)
Q Consensus 18 y~r~p~~~W~~~l~k~ka~G~NtV~~-------yv~Wn~hEp~~G~fdF~g~~D-l~~fl~la~~~GL~VilrpGPyi~a 89 (538)
+.+..++.|. +.+|++|+.-|-. +-.|+..-..-..-+-...+| +.+|.+.|+++||++-+=-.+ -
T Consensus 78 p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~ 151 (384)
T smart00812 78 AEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---F 151 (384)
T ss_pred chhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---H
Confidence 3345566665 5778888886644 334666543222222222345 567888999999987774222 2
Q ss_pred ecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccc
Q 009269 90 EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (538)
Q Consensus 90 Ew~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~ 134 (538)
+|.. |.|... .+.-....+.+.|.++++.|+.+|.+.+..+
T Consensus 152 DW~~---p~y~~~-~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y 192 (384)
T smart00812 152 DWFN---PLYAGP-TSSDEDPDNWPRFQEFVDDWLPQLRELVTRY 192 (384)
T ss_pred HhCC---Cccccc-cccccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 5543 444321 1111223456788888888888888888765
No 92
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.33 E-value=16 Score=37.77 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=48.4
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCC--------CCCceeecch--hhHHHHHHHHHHcCCeEEeecCCc
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEP--------KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPY 86 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp--------~~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPy 86 (538)
..+.-++.++++|+.||.+=.+++-...|.- .-+.|.|+-. -|..++++..++.|++|++-.=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 5778899999999999987766665444432 2245666533 399999999999999999885443
No 93
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=72.02 E-value=6.4 Score=45.82 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCEEEE-cccCCCcC---CCCC-----ce---e-------e---cchhhHHHHHHHHHHcCCeEEeec
Q 009269 29 RLLRAKALGLNTIQT-YVPWNLHE---PKPG-----KL---V-------F---SGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 29 ~l~k~ka~G~NtV~~-yv~Wn~hE---p~~G-----~f---d-------F---~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.|.-+|++|+|+|.+ +|+=...+ ...| -| | | ....|+.++++.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999998 55411111 1111 01 1 2 124689999999999999999983
No 94
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=71.99 E-value=55 Score=35.41 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=58.9
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEc----ccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee-cCCceeeecCCCCC
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTY----VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGF 96 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~y----v~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr-pGPyi~aEw~~GG~ 96 (538)
|+....+++++++++|+..|+.. ++|..-.. +-..+++++-++++++||.|..- ++-+....|..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~-------e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g-- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQ-------ERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG-- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChh-------HHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC--
Confidence 34567899999999999999974 23322211 11345789999999999997642 211101111111
Q ss_pred cccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEE
Q 009269 97 PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMV 145 (538)
Q Consensus 97 P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~ 145 (538)
-+-+.|+..+++.-+++++.+..-+.+ |.+.|.+
T Consensus 101 -----------~las~d~~vR~~ai~~~kraId~A~eL----Ga~~v~v 134 (382)
T TIGR02631 101 -----------GFTSNDRSVRRYALRKVLRNMDLGAEL----GAETYVV 134 (382)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEE
Confidence 133457766666556566666555554 5565444
No 95
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=71.61 E-value=9.3 Score=38.72 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=43.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCC
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGP 85 (538)
....++-++.+|++||++|++ ..|..+++- .|..++|+.++++||+|+.-.|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~~-~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEISL-EERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCCH-HHHHHHHHHHHhCCCeEeccccc
Confidence 466778888999999999988 566666653 36889999999999999988654
No 96
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=71.47 E-value=13 Score=29.17 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=44.0
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEe
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vil 81 (538)
|..-.+.++.+.+.|+|..++|++ .++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~--~~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIA--DTSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEE--ecCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 556778899999999999999973 2333 58888876 5678999999999988754
No 97
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=71.13 E-value=48 Score=36.09 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=71.6
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCC----Cceeecc---hhhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKP----GKLVFSG---IADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~----G~fdF~g---~~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
..|+.+..+.-.+.+++++++|++.+.+---|....... |.+.-+- -.-|..+++.+++.||+.=|...|-++
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 456677788889999999999999999988886542222 3332210 113999999999999999998888776
Q ss_pred eecCC--CCCcccccccCCCce---------ecCCCHHHHHHHHHHHHHHHHH
Q 009269 89 AEWDL--GGFPAWLLAKKPALK---------LRSSDRAYLQLVERWWGVLLPK 130 (538)
Q Consensus 89 aEw~~--GG~P~Wl~~~~p~~~---------~R~~d~~yl~~~~~~~~~l~~~ 130 (538)
+.=.. -..|.|++. .++-. +-.++|...+++...+.+++..
T Consensus 130 ~~~S~l~~~hPdw~l~-~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~ 181 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLR-DPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE 181 (394)
T ss_dssp ESSSCHCCSSBGGBTC-CTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhCccceee-cCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh
Confidence 53111 147999987 33311 2235676666666655555443
No 98
>PLN00196 alpha-amylase; Provisional
Probab=71.09 E-value=12 Score=41.11 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcC---CCCCc-ee-----ecchhhHHHHHHHHHHcCCeEEeec
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHE---PKPGK-LV-----FSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hE---p~~G~-fd-----F~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.+.|.-+|++|+++|-+.=+..... -.+.. |+ |....||.++++.|+++||+||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5788889999999998853332221 11221 22 3345699999999999999999984
No 99
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=70.80 E-value=93 Score=31.16 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=63.5
Q ss_pred EeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCce-eecchhhHHHHHHHHHHcCCeEEeecCCceeeecC
Q 009269 14 GDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKL-VFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWD 92 (538)
Q Consensus 14 G~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~f-dF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~ 92 (538)
|+.+..+-+ -.+.++.+.++|++.|+.. ..+|..-.- +++ ..+++++.++++++||.|.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 444444544 3478999999999999994 333322110 122 235899999999999987653 3432
Q ss_pred CCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEc
Q 009269 93 LGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (538)
Q Consensus 93 ~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~Q 146 (538)
+.+.+.|+..+++..+++++.+...+.+ |.++|-+.
T Consensus 69 --------------~nl~s~d~~~r~~~~~~l~~~i~~A~~l----Ga~~vv~h 104 (273)
T smart00518 69 --------------INLASPDKEKVEKSIERLIDEIKRCEEL----GIKALVFH 104 (273)
T ss_pred --------------ecCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEc
Confidence 1123557777777777777777766554 55655553
No 100
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=70.57 E-value=17 Score=45.37 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=61.7
Q ss_pred cCCCC--CHhhHHHHHHHHHHcCCCEEEE-ccc-CCC---cCCCCCcee----e----cchhhHHHHHHHHHHc-CCeEE
Q 009269 17 HYFRI--LPQHWEDRLLRAKALGLNTIQT-YVP-WNL---HEPKPGKLV----F----SGIADLVSFLKLCQKL-DLLVM 80 (538)
Q Consensus 17 Hy~r~--p~~~W~~~l~k~ka~G~NtV~~-yv~-Wn~---hEp~~G~fd----F----~g~~Dl~~fl~la~~~-GL~Vi 80 (538)
..+++ +-+.|++.|+.+|++|.|+|.. +++ =.. .=-..+++. | .+..|+.++++.|++. ||++|
T Consensus 123 vlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~i 202 (1464)
T TIGR01531 123 VLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSI 202 (1464)
T ss_pred ehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEE
Confidence 34444 3578999999999999999986 444 111 001122222 3 2567899999999985 99999
Q ss_pred eecCCceeeecCCCCC-cccccccCCCceecCCCHHHHHHH
Q 009269 81 LRPGPYICAEWDLGGF-PAWLLAKKPALKLRSSDRAYLQLV 120 (538)
Q Consensus 81 lrpGPyi~aEw~~GG~-P~Wl~~~~p~~~~R~~d~~yl~~~ 120 (538)
+.. + |+.=+. =.|+.+ +|+.-.-..+.+||+.+
T Consensus 203 lDv---V---~NHTa~ds~Wl~e-HPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 203 TDI---V---FNHTANNSPWLLE-HPEAAYNCITSPHLRPA 236 (1464)
T ss_pred EEe---e---ecccccCCHHHHh-ChHhhcCCCCCchhhhH
Confidence 982 1 222232 347776 78765555555555543
No 101
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=69.97 E-value=11 Score=44.58 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=45.6
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCC-----cCCC---CC--ceeecchhhHHHHHHHHHHcCCeEEeecCC
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNL-----HEPK---PG--KLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~-----hEp~---~G--~fdF~g~~Dl~~fl~la~~~GL~VilrpGP 85 (538)
.-+.|.+.|.-++++|+++|-+-=++.. |--. .. .-.|.+..|+.+|++.|+++||.||+..=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3567899999999999999977322221 1100 00 113556789999999999999999998544
No 102
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=69.61 E-value=78 Score=32.95 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=43.6
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEccc----CCCcCCC----CCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVP----WNLHEPK----PGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp~----~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+.++-++.++.|...|+|.+..|+- +.-+ |+ +|.|. ..|+.++++.|++.|+.||..
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGRMRGAYT---KEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCC-cccccCCCCcC---HHHHHHHHHHHHHcCCEEEec
Confidence 3688899999999999999999753 3222 21 22221 358999999999999999987
No 103
>PRK12677 xylose isomerase; Provisional
Probab=69.48 E-value=40 Score=36.47 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=55.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEEc----ccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEe-ecCCceeeecCCCCCc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTY----VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGFP 97 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~y----v~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vil-rpGPyi~aEw~~GG~P 97 (538)
+-.+.+.+++++++|+..|+.. ++|..-. .+....++++.+++++.||.|.. -|.-+....+..|
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~-------~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g--- 99 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFHDDDLVPFGATD-------AERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG--- 99 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEecccccCCCCCCh-------hhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC---
Confidence 3458899999999999999984 2222111 11123589999999999999774 3321111111122
Q ss_pred ccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccc
Q 009269 98 AWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (538)
Q Consensus 98 ~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~ 134 (538)
-+-+.|+.-++...+.+.+.+..-+.+
T Consensus 100 ----------~lts~d~~~R~~Ai~~~~r~IdlA~eL 126 (384)
T PRK12677 100 ----------AFTSNDRDVRRYALRKVLRNIDLAAEL 126 (384)
T ss_pred ----------cCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 233556776666666666666655554
No 104
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=68.67 E-value=15 Score=38.40 Aligned_cols=66 Identities=5% Similarity=-0.027 Sum_probs=48.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC---CCceeecch--hhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK---PGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~---~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
.+.-.+.++++++.||.+=.+.+-+....-. ...|+|.-. -|..++++..++.|++|++-.=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 5677899999999999877776654433321 223555422 38999999999999999998777775
No 105
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=67.69 E-value=28 Score=37.76 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=42.2
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
..+.|+++++.+|++||+....-+- ....+.. .-|...++.|++.|+++.+-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 6899999999999999999888654 2222332 338999999999999998884
No 106
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=67.30 E-value=9.5 Score=40.51 Aligned_cols=73 Identities=26% Similarity=0.292 Sum_probs=58.0
Q ss_pred EEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCc-eeecchhhHHHHHHHHHHcCCeEEeecCCceee
Q 009269 11 IIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK-LVFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (538)
Q Consensus 11 i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~-fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~a 89 (538)
.+|=++.+.|.+.+.=..-|++|...||..|-| ++|.|.+.. --|.- +.++++.|++.|++||+...|-|.-
T Consensus 3 ~~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~~---~~ell~~Anklg~~vivDvnPsil~ 75 (360)
T COG3589 3 MLGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFHR---FKELLKEANKLGLRVIVDVNPSILK 75 (360)
T ss_pred ceeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHHH---HHHHHHHHHhcCcEEEEEcCHHHHh
Confidence 356677788999888889999999999988777 567776542 22344 8899999999999999998887765
Q ss_pred e
Q 009269 90 E 90 (538)
Q Consensus 90 E 90 (538)
+
T Consensus 76 ~ 76 (360)
T COG3589 76 E 76 (360)
T ss_pred h
Confidence 4
No 107
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=66.94 E-value=13 Score=37.77 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=51.0
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCce--eecc--hhhHHHHHHHHHHcCCeEEeecCCce
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKL--VFSG--IADLVSFLKLCQKLDLLVMLRPGPYI 87 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~f--dF~g--~~Dl~~fl~la~~~GL~VilrpGPyi 87 (538)
..++..+.++.+++.||.+=.+.+-+...+. -+.| +|+- .-|..++++..++.|++|++-.=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 4778899999999999987666666665543 4566 4432 34899999999999999999977776
No 108
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=66.55 E-value=16 Score=44.50 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=59.2
Q ss_pred ccEEEEEeeeCCCC---C--CcccccCCccceEEEEeCCCcCCCCCCCeeEEEEEeec-ccceeecccCCCCCcEEEEEE
Q 009269 384 FGFLLYVSEFGGKD---Y--GSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSNISLFVLV 457 (538)
Q Consensus 384 ~GyvlY~t~i~~~~---~--~~~L~~~~v~Dra~Vfvdg~~~~~~~~~~~vg~l~r~~-~~~~~l~~~~~~~~~~L~ILV 457 (538)
.|-.+||+++..+. + ...|.+..|.-.|+||||| ++||.-.... .-.+.++..-..+.++|.|.|
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG---------~~VG~~~g~~~pfefDIT~~l~~G~N~L~V~V 189 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNG---------RWVGYSQDSRLPAEFDLSPFLRAGENRLAVMV 189 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECC---------EEEEeecCCCceEEEEChhhhcCCccEEEEEE
Confidence 57889999987552 1 3467899999999999999 7888643211 122344321112457888888
Q ss_pred EecCccccCCCCCC-----CCCcccceeeCCE---EecCeEEE
Q 009269 458 ENMGRVNYGPYMFD-----EKGILSSVYLGGK---VLRGWKMI 492 (538)
Q Consensus 458 EN~GRvNyG~~~~d-----~KGi~g~V~l~~~---~L~~W~~~ 492 (538)
-.--. |..+.+ ..||..+|+|--. .+.+..+.
T Consensus 190 ~~~sd---gs~~e~qd~w~~sGI~R~V~L~~~p~~~I~d~~v~ 229 (1027)
T PRK09525 190 LRWSD---GSYLEDQDMWRMSGIFRDVSLLHKPTTQLSDFHIT 229 (1027)
T ss_pred EecCC---CCccccCCceeeccccceEEEEEcCCcEEeeeEEE
Confidence 53222 222321 3699999998433 33444443
No 109
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=66.54 E-value=9.9 Score=47.12 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCEEEE-cccCCCcCCC---CCc-----e----------eec--chhhHHHHHHHHHHcCCeEEee
Q 009269 28 DRLLRAKALGLNTIQT-YVPWNLHEPK---PGK-----L----------VFS--GIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 28 ~~l~k~ka~G~NtV~~-yv~Wn~hEp~---~G~-----f----------dF~--g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+.|.-+|++|+|+|.+ +|+=...|.. .|. | .|. ...|+.++++.|+++||.|||.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILD 266 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILD 266 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEE
Confidence 4567899999999998 5653222211 110 2 133 5679999999999999999998
No 110
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=66.35 E-value=14 Score=47.12 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=46.4
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCc---e----------eecchhhHHHHHHHHHHcCCeEEeecCC
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK---L----------VFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~---f----------dF~g~~Dl~~fl~la~~~GL~VilrpGP 85 (538)
+-+.|.+.|.-+|++|+|+|-+-=.+. ..+|. | .|.+..|+.+|++.|+++||.||+..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~---a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILK---ARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcC---CCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 467899999999999999998832232 22221 2 2456779999999999999999998544
No 111
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=66.35 E-value=15 Score=43.86 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=46.5
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCC------cee-------ecchhhHHHHHHHHHHcCCeEEeecCCc
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG------KLV-------FSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G------~fd-------F~g~~Dl~~fl~la~~~GL~VilrpGPy 86 (538)
..-+.|.+.|.-++++|+|+|-+-=++. ..+| ..| |.+..|+.+|++.|+++||.||+..=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~---a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILA---ARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCcc---CCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4467799999999999999998732221 1122 112 4466799999999999999999985553
No 112
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=66.24 E-value=22 Score=37.94 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=65.8
Q ss_pred EEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCCceecCCCHHHHH
Q 009269 40 TIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQ 118 (538)
Q Consensus 40 tV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~ 118 (538)
-|.+.|.|+.+--+ | =...++.|+++|++|+-- |.=||+ +-..|+.. + ++. ++ +
T Consensus 32 yvD~fvywsh~~~~iP----------p~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~----l-L~~-~~---~ 86 (339)
T cd06547 32 YVDTFVYFSHSAVTIP----------PADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED----F-LKK-DE---D 86 (339)
T ss_pred hhheeecccCccccCC----------CcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH----H-hcc-Cc---c
Confidence 36778888876432 1 156788999999999876 555776 34556654 1 222 11 1
Q ss_pred HHHHHHHHHHHHhccccccCCCCEEEEccccccCCCC---CcHHHHHHHHHHHHHh-cCCceEEEEe
Q 009269 119 LVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG---DDKEYLHHLVTLARAH-LGKDIILYTT 181 (538)
Q Consensus 119 ~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~---~~~~y~~~L~~~~~~~-~G~~v~l~t~ 181 (538)
...++.++|+...+.+-+ .| +.+-+||..+.-. .-.++++.|++.+++. -+..|..|.+
T Consensus 87 ~~~~~a~kLv~lak~yGf--DG--w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs 149 (339)
T cd06547 87 GSFPVADKLVEVAKYYGF--DG--WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDS 149 (339)
T ss_pred cchHHHHHHHHHHHHhCC--Cc--eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEec
Confidence 234666677777766533 23 6666777763111 2245666666666552 1445666644
No 113
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.15 E-value=14 Score=38.61 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=49.8
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCC-----CCCceeecch--hhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEP-----KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-----~~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
..+...+.++++++.||.+=.+.+-+..+.. .-|.|+|+-. -|..++++..++.|++|++-.=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4677899999999999886666655444432 2345555532 38999999999999999999767665
No 114
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=66.02 E-value=11 Score=45.13 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHcCCeEEee
Q 009269 63 ADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 63 ~Dl~~fl~la~~~GL~Vilr 82 (538)
.++.++++.|+++||.|||.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlD 423 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMD 423 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 47999999999999999998
No 115
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=65.97 E-value=51 Score=34.57 Aligned_cols=148 Identities=12% Similarity=0.152 Sum_probs=81.1
Q ss_pred eecCCCCCHhhHHHHHHHHHHcCCCEEEEccc--CCCc---CCC---CCce---------------e---ecchhhHHHH
Q 009269 15 DLHYFRILPQHWEDRLLRAKALGLNTIQTYVP--WNLH---EPK---PGKL---------------V---FSGIADLVSF 68 (538)
Q Consensus 15 ~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~--Wn~h---Ep~---~G~f---------------d---F~g~~Dl~~f 68 (538)
+=|| +|.+..++.|+.|...++|++..++- |.+- .|. .|.+ . |=-..|+.++
T Consensus 10 aR~~--~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~ei 87 (326)
T cd06564 10 GRKY--YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKEL 87 (326)
T ss_pred cCCC--CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHH
Confidence 3345 47899999999999999999998654 3331 111 0100 0 0013589999
Q ss_pred HHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCCceec------------CCCHHHHHHHHHHHHHHHHHhccccc
Q 009269 69 LKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLR------------SSDRAYLQLVERWWGVLLPKIAPLLY 136 (538)
Q Consensus 69 l~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R------------~~d~~yl~~~~~~~~~l~~~l~~~~~ 136 (538)
++.|++.|+.||.-+ -. -|..=+|+.. +|+...+ -.+|.=.+ +++.|+..+++..-
T Consensus 88 v~yA~~rgI~vIPEI----D~---PGH~~a~~~~-~pel~~~~~~~~~~~~~l~~~~~~t~~----f~~~l~~E~~~~f~ 155 (326)
T cd06564 88 IAYAKDRGVNIIPEI----DS---PGHSLAFTKA-MPELGLKNPFSKYDKDTLDISNPEAVK----FVKALFDEYLDGFN 155 (326)
T ss_pred HHHHHHcCCeEeccC----CC---cHHHHHHHHh-hHHhcCCCcccCCCcccccCCCHHHHH----HHHHHHHHHHHhcC
Confidence 999999999999872 10 1222234433 3433222 13343344 44445544444321
Q ss_pred cCCCCEEEEccccccCC----CCCcHHHHHHHHHHHHHhcCCceEEE
Q 009269 137 DIGGPIVMVQIENEFGS----YGDDKEYLHHLVTLARAHLGKDIILY 179 (538)
Q Consensus 137 ~~gGpII~~QVENEyg~----~~~~~~y~~~L~~~~~~~~G~~v~l~ 179 (538)
..++.|=+=- -|+-. ...-..|++.+.+.+++ .|..+.++
T Consensus 156 -~~~~~~HiGg-DE~~~~~~~~~~~~~f~~~~~~~v~~-~gk~~~~W 199 (326)
T cd06564 156 -PKSDTVHIGA-DEYAGDAGYAEAFRAYVNDLAKYVKD-KGKTPRVW 199 (326)
T ss_pred -CCCCEEEecc-ccccccCccHHHHHHHHHHHHHHHHH-cCCeEEEe
Confidence 0122221110 11111 11235788999999988 68777665
No 116
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=65.52 E-value=14 Score=38.69 Aligned_cols=67 Identities=6% Similarity=0.008 Sum_probs=51.7
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch--hhHHHHHHHHHHcCCeEEeecCCceee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~a 89 (538)
..++.++.++++++.+|.+=.+.+-+.... .-+.|+|+-. -|..++++..++.|++|++-.=|+|..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 477889999999999998766655543333 2456666543 389999999999999999998888863
No 117
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=65.34 E-value=12 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHcCCeEEeec
Q 009269 62 IADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 62 ~~Dl~~fl~la~~~GL~Vilrp 83 (538)
..++.++++.|+++||.|||..
T Consensus 554 i~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 3689999999999999999984
No 118
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=64.88 E-value=16 Score=38.65 Aligned_cols=68 Identities=4% Similarity=-0.096 Sum_probs=52.8
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch--hhHHHHHHHHHHcCCeEEeecCCceeee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~aE 90 (538)
..++-++.++++++.||.+=.+.+-+... ...+.|+|+-. -|..++++..++.|++|++-.=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 46778999999999999877666554432 34556666543 2899999999999999999999999853
No 119
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=63.64 E-value=1.1e+02 Score=30.71 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=49.8
Q ss_pred EeeEEEEEeecCC---CCCHhhHHHHHHHHHHcCCCEEEEccc--CCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEe
Q 009269 7 EPFRIIGGDLHYF---RILPQHWEDRLLRAKALGLNTIQTYVP--WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 7 ~p~~i~sG~~Hy~---r~p~~~W~~~l~k~ka~G~NtV~~yv~--Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vil 81 (538)
+-+.++.++.|.+ +++++..+..-+.+++.|+. |...-+ .|+..|.|....-+ ..-+.+.+++|++.|..+|+
T Consensus 25 ~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~-ls~h~p~~~nl~s~d~~~r~~~-~~~l~~~i~~A~~lGa~~vv 102 (273)
T smart00518 25 RSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNID-VSVHAPYLINLASPDKEKVEKS-IERLIDEIKRCEELGIKALV 102 (273)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCC-EEEECCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEE
Confidence 3456666777655 57788888888889999997 444322 35555555444433 13488899999999997554
No 120
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=62.99 E-value=17 Score=41.37 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=50.6
Q ss_pred HhhHHHHHHHHHHcCCCEEEEc-ccCCCcCCCCCce-----ee---cch----hhHHHHHHHHHHcCCeEEeecCCceee
Q 009269 23 PQHWEDRLLRAKALGLNTIQTY-VPWNLHEPKPGKL-----VF---SGI----ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~y-v~Wn~hEp~~G~f-----dF---~g~----~Dl~~fl~la~~~GL~VilrpGPyi~a 89 (538)
.+.-++.|..|+...||.|+.| ..|.+|.|-|+.= .| .++ .=+..+|+.|++.|++++.=--=|-+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 4577889999999999999999 8899999986644 22 221 247899999999999987642222222
Q ss_pred ec--CCCCCcccccccCC
Q 009269 90 EW--DLGGFPAWLLAKKP 105 (538)
Q Consensus 90 Ew--~~GG~P~Wl~~~~p 105 (538)
+. ..|=.|.|-+-.++
T Consensus 197 ~~~~~~gv~~eW~ly~d~ 214 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLYKDD 214 (559)
T ss_dssp TT--S--SS-GGBEEESS
T ss_pred cCcccccCCchhhhhhcc
Confidence 21 24557888875443
No 121
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=62.82 E-value=30 Score=40.27 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=74.1
Q ss_pred EeeEEEEEeecCCC--CC---HhhHHHHHHHHHHcCCCEEEE---------------cccCCCcCCCCCceeecchhhHH
Q 009269 7 EPFRIIGGDLHYFR--IL---PQHWEDRLLRAKALGLNTIQT---------------YVPWNLHEPKPGKLVFSGIADLV 66 (538)
Q Consensus 7 ~p~~i~sG~~Hy~r--~p---~~~W~~~l~k~ka~G~NtV~~---------------yv~Wn~hEp~~G~fdF~g~~Dl~ 66 (538)
.+.+++.-.+-|-- -| .+.-...|+.+|++|+|||-. |++| .|=| |+-|. ++
T Consensus 312 ~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~-----f~ 383 (671)
T PRK14582 312 SPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADL-----FN 383 (671)
T ss_pred CCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCC-----cC
Confidence 34555555554443 22 356788999999999999943 6677 4433 22221 12
Q ss_pred H-HHHHHHHcCCeEEeecCCceee---------ecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccc
Q 009269 67 S-FLKLCQKLDLLVMLRPGPYICA---------EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLY 136 (538)
Q Consensus 67 ~-fl~la~~~GL~VilrpGPyi~a---------Ew~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~ 136 (538)
+ ...++.+.|++|-..-.||-.. +++..+-|..+. |+--.| -..|..++++|++.|...|+.+.
T Consensus 384 ~~aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r--l~P~~pe~r~~i~~i~~dla~~~- 457 (671)
T PRK14582 384 RVAWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIH---PEQYRR--LSPFDDRVRAQVGMLYEDLAGHA- 457 (671)
T ss_pred HHHHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccC---CCCCcC--CCCCCHHHHHHHHHHHHHHHHhC-
Confidence 2 3455889999999998888642 111111111110 111111 22456788888888888887752
Q ss_pred cCCCCEEEEcccccc
Q 009269 137 DIGGPIVMVQIENEF 151 (538)
Q Consensus 137 ~~gGpII~~QVENEy 151 (538)
+|=++|..-+.
T Consensus 458 ----~~dGilf~Dd~ 468 (671)
T PRK14582 458 ----AFDGILFHDDA 468 (671)
T ss_pred ----CCceEEecccc
Confidence 56667766554
No 122
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=62.80 E-value=39 Score=37.88 Aligned_cols=160 Identities=19% Similarity=0.383 Sum_probs=87.8
Q ss_pred eeEEEEEeec------CCCCCHhhHHHHHHHH---HHcCCCEEEEccc---CCCcC----CCCCce---eecchh-hH--
Q 009269 8 PFRIIGGDLH------YFRILPQHWEDRLLRA---KALGLNTIQTYVP---WNLHE----PKPGKL---VFSGIA-DL-- 65 (538)
Q Consensus 8 p~~i~sG~~H------y~r~p~~~W~~~l~k~---ka~G~NtV~~yv~---Wn~hE----p~~G~f---dF~g~~-Dl-- 65 (538)
.+.=+||++- ..+++++.=++.|+.+ +-+|+|.+|+.|- .+.++ ..|+.| +|+-.+ |.
T Consensus 75 ~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~ 154 (496)
T PF02055_consen 75 TIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKY 154 (496)
T ss_dssp E--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTT
T ss_pred EEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhh
Confidence 3444566653 2345544434444443 4589999999875 22221 123332 233222 32
Q ss_pred -HHHHHHHHHc--CCeEEeecCCceeeecCCCCCcccccccCCCc----eec-CCCHHHHHHHHHHHHHHHHHhcccccc
Q 009269 66 -VSFLKLCQKL--DLLVMLRPGPYICAEWDLGGFPAWLLAKKPAL----KLR-SSDRAYLQLVERWWGVLLPKIAPLLYD 137 (538)
Q Consensus 66 -~~fl~la~~~--GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~----~~R-~~d~~yl~~~~~~~~~l~~~l~~~~~~ 137 (538)
-.+|+.|++. +|+++.-| | -.|+|++.. ..+ .++ ...+.|.+....||.+.++.++++
T Consensus 155 ~ip~ik~a~~~~~~lki~aSp-------W---SpP~WMKtn-~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~--- 220 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASP-------W---SPPAWMKTN-GSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE--- 220 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-------S------GGGBTT-SSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHhCCCcEEEEec-------C---CCCHHHccC-CcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC---
Confidence 4577777663 57777765 5 479999974 222 233 234578888888888888888653
Q ss_pred CCCCEEEEccccccCC-------CC-------CcHHHHHH-HHHHHHHhcCC--ceEEEEecC
Q 009269 138 IGGPIVMVQIENEFGS-------YG-------DDKEYLHH-LVTLARAHLGK--DIILYTTDG 183 (538)
Q Consensus 138 ~gGpII~~QVENEyg~-------~~-------~~~~y~~~-L~~~~~~~~G~--~v~l~t~dg 183 (538)
|=+|-++-+.||... |. ..++|++. |...+++ .|. ++-|+..|-
T Consensus 221 -GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~-~~~g~d~kI~~~D~ 281 (496)
T PF02055_consen 221 -GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRK-AGLGKDVKILIYDH 281 (496)
T ss_dssp -T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHT-STT-TTSEEEEEEE
T ss_pred -CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHh-cCCCCceEEEEEec
Confidence 779999999999863 22 24677764 8888887 454 888777663
No 123
>PLN02877 alpha-amylase/limit dextrinase
Probab=62.47 E-value=15 Score=44.38 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHcCCeEEee
Q 009269 63 ADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 63 ~Dl~~fl~la~~~GL~Vilr 82 (538)
.+++++++.|+++||.||+.
T Consensus 466 ~efk~mV~~lH~~GI~VImD 485 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLD 485 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 46999999999999999998
No 124
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=62.04 E-value=67 Score=33.37 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=47.1
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEccc----CCCcCCC------CC----------ceeecchhhHHHHHHHHHHcCCeEE
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEPK------PG----------KLVFSGIADLVSFLKLCQKLDLLVM 80 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp~------~G----------~fdF~g~~Dl~~fl~la~~~GL~Vi 80 (538)
.+.+..++.|+.|...++|++..++- |.+--+. .| .|. ..|+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT---~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYT---YAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeEC---HHHHHHHHHHHHHcCCEEE
Confidence 46889999999999999999999988 7554221 22 222 3579999999999999999
Q ss_pred ee
Q 009269 81 LR 82 (538)
Q Consensus 81 lr 82 (538)
..
T Consensus 90 PE 91 (303)
T cd02742 90 PE 91 (303)
T ss_pred Ee
Confidence 87
No 125
>PRK03705 glycogen debranching enzyme; Provisional
Probab=61.08 E-value=15 Score=42.69 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCEEEE-cccCCCcCCCC---C-----cee----------ecc-----hhhHHHHHHHHHHcCCeEEee
Q 009269 29 RLLRAKALGLNTIQT-YVPWNLHEPKP---G-----KLV----------FSG-----IADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 29 ~l~k~ka~G~NtV~~-yv~Wn~hEp~~---G-----~fd----------F~g-----~~Dl~~fl~la~~~GL~Vilr 82 (538)
.|.-+|++|+|+|.+ +|+=...++.. | -|| |.. ..++.++++.|+++||+|||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 488999999999998 45411111110 1 011 221 258999999999999999998
No 126
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=60.98 E-value=96 Score=32.79 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=47.7
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEccc----CCCcCCC------CCcee--------ecchhhHHHHHHHHHHcCCeEEee
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEPK------PGKLV--------FSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp~------~G~fd--------F~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.|.+..++.|+.|...++|++..++- |.+.-+. .|.+. |=-..|+.++++.|++.|+.||.-
T Consensus 15 ~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 15 FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 47899999999999999999999884 6554221 23221 112458999999999999999987
No 127
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=60.66 E-value=1.4e+02 Score=31.06 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=44.0
Q ss_pred EEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEE-cccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCc
Q 009269 10 RIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (538)
Q Consensus 10 ~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPy 86 (538)
++++...-..|.+...-++.-+.+++.||-.|.+ ...+..+.-.+ .+..+.+.|+++|+-|++..|+.
T Consensus 99 rf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~---------~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 99 RFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDP---------RLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred ceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCCh---------HHHHHHHHHHHcCCCEEEEeCCC
Confidence 3344444444555334455556667789988887 34444333221 27899999999999999987764
No 128
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=60.60 E-value=83 Score=33.53 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEccc----CCCcCCC------CCcee-------------------ecchhhHHHHHHH
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEPK------PGKLV-------------------FSGIADLVSFLKL 71 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp~------~G~fd-------------------F~g~~Dl~~fl~l 71 (538)
+|.+..++.|+.|...++|+...++. |.+--+. .|.|. |=-..|+.++++.
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 94 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAY 94 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHH
Confidence 47899999999999999999999874 5432111 12221 0014589999999
Q ss_pred HHHcCCeEEee
Q 009269 72 CQKLDLLVMLR 82 (538)
Q Consensus 72 a~~~GL~Vilr 82 (538)
|++.|+.||.-
T Consensus 95 A~~rgI~VIPE 105 (357)
T cd06563 95 AAERGITVIPE 105 (357)
T ss_pred HHHcCCEEEEe
Confidence 99999999987
No 129
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=60.53 E-value=31 Score=35.71 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=66.5
Q ss_pred EEEEEeecCCCCC---HhhH-HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCC
Q 009269 10 RIIGGDLHYFRIL---PQHW-EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (538)
Q Consensus 10 ~i~sG~~Hy~r~p---~~~W-~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGP 85 (538)
+-+++..|+..-| .... -++|++-.++|.+.+-|-.+ ||.+- +.+|++.|++.|+.+=+.||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~~---~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVDN---FLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHHH---HHHHHHHHHHcCCCCCEEeec
Confidence 4577777876644 2222 23444444699999999544 33333 789999999997765555555
Q ss_pred cee---------eecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhcc
Q 009269 86 YIC---------AEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (538)
Q Consensus 86 yi~---------aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~ 133 (538)
.-+ .+|..--+|.|+.++.- ...+++....+.--.+...++..+..
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~--~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE--PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH--hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444 56766668999987311 11233344455555666666666654
No 130
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=60.51 E-value=63 Score=35.12 Aligned_cols=137 Identities=15% Similarity=0.199 Sum_probs=73.0
Q ss_pred HHcCCCEEEEccc---------------CCCcC---CCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCC
Q 009269 34 KALGLNTIQTYVP---------------WNLHE---PKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG 95 (538)
Q Consensus 34 ka~G~NtV~~yv~---------------Wn~hE---p~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG 95 (538)
|-+|||.+|.-|= |-..| +..|.|||+....=..||+.|++.|...++-. .--
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecC
Confidence 4589999987542 32322 56889999877777889999999999877651 114
Q ss_pred CcccccccCCCc----eecC-CCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCC-C--C----------Cc
Q 009269 96 FPAWLLAKKPAL----KLRS-SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS-Y--G----------DD 157 (538)
Q Consensus 96 ~P~Wl~~~~p~~----~~R~-~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~-~--~----------~~ 157 (538)
.|.|+++. ... ...+ -.+...++-..|+..++++++.+ |=+|--+--=||... + + ..
T Consensus 128 PP~~MT~N-G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~----GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~ 202 (384)
T PF14587_consen 128 PPWWMTKN-GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKW----GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQ 202 (384)
T ss_dssp S-GGGSSS-SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCT----T--EEEEE--S-TTS-GG--SS-B----HHHH
T ss_pred CCHHHhcC-CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhc----CCccceeCCcCCCCCCCCCCCcCCCCCCHHHH
Confidence 67788763 111 0011 12345666777777777777432 546667777799753 1 1 13
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEecCCC
Q 009269 158 KEYLHHLVTLARAHLGKDIILYTTDGGT 185 (538)
Q Consensus 158 ~~y~~~L~~~~~~~~G~~v~l~t~dg~~ 185 (538)
...++.|...+++ .|++..+-.+|...
T Consensus 203 a~vI~~L~~~L~~-~GL~t~I~~~Ea~~ 229 (384)
T PF14587_consen 203 ADVIRALDKALKK-RGLSTKISACEAGD 229 (384)
T ss_dssp HHHHHHHHHHHHH-HT-S-EEEEEEESS
T ss_pred HHHHHHHHHHHHh-cCCCceEEecchhh
Confidence 5678888888888 78887776677543
No 131
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=60.28 E-value=47 Score=33.91 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=60.9
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (538)
.-.|+++|.-+|++||+.|++-|- |.- --..||+. ...-.+.+.+.+.|+.+ |-+|
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSvD----EsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmC------------ 74 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSVD----ESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMC------------ 74 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecc----chHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchh------------
Confidence 457999999999999999999553 332 23456654 23567788888999732 3344
Q ss_pred cccCCCceecCCCHHHHHHHHHHHHHHHHHhccc
Q 009269 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (538)
Q Consensus 101 ~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~ 134 (538)
+..|.+..+-+.|+.-.+.....|.+-+..-.++
T Consensus 75 lSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dL 108 (287)
T COG3623 75 LSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDL 108 (287)
T ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 1113344466889998888888777766655554
No 132
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=58.93 E-value=26 Score=37.16 Aligned_cols=72 Identities=10% Similarity=-0.010 Sum_probs=56.8
Q ss_pred ecCCCC---CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch--hhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 16 ~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
+|..|+ ..++.++.++++++.+|-+=.+++-|.++.- -+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~-~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDN-YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhcC-CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 454554 4778899999999999987777777766643 466777543 38999999999999999998888887
No 133
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=58.13 E-value=25 Score=40.71 Aligned_cols=74 Identities=12% Similarity=0.284 Sum_probs=53.5
Q ss_pred HhhHHHHHHHHHHcCCCEEEE---ccc---CC--CcCCCCCceee---------cchhhHHHHHHHHHHcCCeEEeec--
Q 009269 23 PQHWEDRLLRAKALGLNTIQT---YVP---WN--LHEPKPGKLVF---------SGIADLVSFLKLCQKLDLLVMLRP-- 83 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~---yv~---Wn--~hEp~~G~fdF---------~g~~Dl~~fl~la~~~GL~Vilrp-- 83 (538)
+..|+ -++.+|+++|-+ |.. |. .---..|-||- ....|++++++.|+++||+||+..
T Consensus 77 ~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVp 152 (688)
T TIGR02455 77 DALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIP 152 (688)
T ss_pred hHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45555 889999999987 333 43 22223455653 334699999999999999999872
Q ss_pred ------CCceeeecCCCCCcccc
Q 009269 84 ------GPYICAEWDLGGFPAWL 100 (538)
Q Consensus 84 ------GPyi~aEw~~GG~P~Wl 100 (538)
-|+.-|++..+-+|.|.
T Consensus 153 nHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 153 AHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCcchHHHhhcCCCCCCce
Confidence 24778888888888887
No 134
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=57.38 E-value=19 Score=36.14 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCC-cCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNL-HEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~-hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
+.+++.++.++++|..+|.+.-.... .+...-.+... ...|+++.++|+++|+.+.+.|
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 35677888999999999966322111 11111112211 1368999999999999999986
No 135
>PLN02784 alpha-amylase
Probab=57.05 E-value=29 Score=41.37 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCC---CCCc-ee----ecchhhHHHHHHHHHHcCCeEEeec
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEP---KPGK-LV----FSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp---~~G~-fd----F~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.+.|.-++++|+++|-+.=+.....+ .+.. |+ |....||.++++.|+++||+||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 66788899999999998544332221 1111 11 3345699999999999999999984
No 136
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=54.88 E-value=1.2e+02 Score=32.18 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=25.0
Q ss_pred ceecCEeeEEEEEeecCCCCC-HhhHHHHH-HHHHHcCCCEEEE
Q 009269 2 FRKDGEPFRIIGGDLHYFRIL-PQHWEDRL-LRAKALGLNTIQT 43 (538)
Q Consensus 2 f~~dG~p~~i~sG~~Hy~r~p-~~~W~~~l-~k~ka~G~NtV~~ 43 (538)
+.|||||++++=..- -+| ...+-+.+ +.+|++|+.-+-+
T Consensus 154 ikVdGKPv~~Iy~p~---~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 154 IKVDGKPVFLIYRPG---DIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred eeECCEEEEEEECcc---cccCHHHHHHHHHHHHHHcCCCceEE
Confidence 579999998875542 233 33333344 5668899996555
No 137
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=54.72 E-value=31 Score=36.43 Aligned_cols=66 Identities=8% Similarity=0.014 Sum_probs=49.7
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch--hhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
..+...+.++++++.||.+=.+.+-+.... .-+.|+|+-. -|..++++..++.|++|++-.=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 467789999999999998755555544433 2345666532 38999999999999999998777775
No 138
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=54.61 E-value=39 Score=26.55 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
..++.++.+++.|++.|-+= -|. ++.+ ..++.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~~---~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLFG---AVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------cccC---HHHHHHHHHHcCCeEEEE
Confidence 46788999999999999871 221 4445 678889999999988764
No 139
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=54.10 E-value=4 Score=40.70 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
-...+.+.++|.+.|.+.++|....+..-.+. ..++.++.+.|++.||+||+. +|..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~---~~~i~~v~~~~~~~gl~vIlE--~~l~ 135 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEV---IEEIAAVVEECHKYGLKVILE--PYLR 135 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHH---HHHHHHHHHHHHTSEEEEEEE--ECEC
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHH---HHHHHHHHHHHhcCCcEEEEE--EecC
Confidence 45688999999999999999976554432222 346999999999999999999 4443
No 140
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=53.43 E-value=39 Score=37.42 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=49.1
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeee
Q 009269 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (538)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aE 90 (538)
..|-+.|.+.-++.++++.++|+..|+++.+-|.. .++...++.|+++|+.|.+. ||.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~----i~~t 146 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA----ISYT 146 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE----EEee
Confidence 44667788888999999999999999999887654 25899999999999998777 6655
No 141
>PRK09267 flavodoxin FldA; Validated
Probab=52.90 E-value=91 Score=29.06 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=47.5
Q ss_pred EeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 7 EPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 7 ~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
-..++++...|....++..|.+-+++++...++...+.+| .......-.-.|.. -+..+-+++++.|..++-.
T Consensus 47 ~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~~~--~~~~l~~~l~~~g~~~vg~ 119 (169)
T PRK09267 47 YDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYFCD--AMGTLYDIVEPRGATIVGH 119 (169)
T ss_pred CCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHHHH--HHHHHHHHHHHCCCEEECc
Confidence 3567888889877777889999999888877777777666 22211111111222 2567777788889665443
No 142
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=52.84 E-value=63 Score=34.40 Aligned_cols=146 Identities=12% Similarity=0.200 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCCC-ccc--ccc-CccCCCeeeeeecCCC-----CC-CCch-hH--HHHHHhcC
Q 009269 157 DKEYLHHLVTLARAHLGKDIILYTTDGGT-RET--LLK-GTIRGDAVFAAVDFST-----GA-EPWP-IF--KLQKQFNA 223 (538)
Q Consensus 157 ~~~y~~~L~~~~~~~~G~~v~l~t~dg~~-~~~--~~~-g~l~~~~v~~~~~f~~-----~~-~~~~-~f--~~~~~~~~ 223 (538)
-.+|++++++.+|++ .-+.|+.|+-.+. ... ... .. .-|+.+..++.. .. .+.. .+ ++.+..
T Consensus 211 ~~~~~~~~~~~ir~~-~p~~~vt~n~~~~~~~~~d~~~~a~--~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~-- 285 (374)
T PF02449_consen 211 VAEFFRWQADIIREY-DPDHPVTTNFMGSWFNGIDYFKWAK--YLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSL-- 285 (374)
T ss_dssp HHHHHHHHHHHHHHH-STT-EEE-EE-TT---SS-HHHHGG--GSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHh-CCCceEEeCccccccCcCCHHHHHh--hCCcceeccccCcccCCCCCCHHHHHHHHHHHHhh--
Confidence 357889999999995 4456666553221 001 000 11 112444322211 11 1111 11 223333
Q ss_pred CCCCCCcccccccccccccCCCCccCChHHHHHH-HHHHHHcCCceEEEeecCCCCCCCCCCCCCCCCCCCCCCCCcCcC
Q 009269 224 PGKSPPLSSEFYTGWLTHWGEKIAKTDADFTASY-LEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYD 302 (538)
Q Consensus 224 ~~~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~-l~~~l~~~~s~n~YM~hGGTNfG~~~Ga~~~~~~~~~~p~~TSYD 302 (538)
...+|.+++|.++| -..|+.......+..+... +..+..+...+.|+-+ ..-.+|.- .|
T Consensus 286 ~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E----------~~-------- 345 (374)
T PF02449_consen 286 AKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAE----------QF-------- 345 (374)
T ss_dssp TTT--EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTT----------TT--------
T ss_pred cCCCceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCch----------hh--------
Confidence 23579999999999 5567655444444444443 3444443334454443 33333321 11
Q ss_pred CCCccccCC-CCChHHHHHHHHHHHhh
Q 009269 303 YDAPIKESG-DVDNPKFKAIRRVVEKF 328 (538)
Q Consensus 303 Y~APi~E~G-~~t~~Ky~~lr~~i~~~ 328 (538)
..+-|+-+| .+|+ +|.+++++-++.
T Consensus 346 ~~g~~~~dg~~~~~-~~~e~~~~~~~l 371 (374)
T PF02449_consen 346 HGGLVDHDGREPTR-RYREVAQLGREL 371 (374)
T ss_dssp S--SB-TTS--B-H-HHHHHHHHHHHH
T ss_pred hcccCCccCCCCCc-HHHHHHHHHHHH
Confidence 124455668 7776 999999886654
No 143
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=52.83 E-value=32 Score=36.21 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=41.9
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcC---CCCCcee-ec----chhhHHHHHHHHHHcCCeEEee
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHE---PKPGKLV-FS----GIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE---p~~G~fd-F~----g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+..-..+++.+|..|+|++-+-+-=..-| |....+. .. -..|+.-||+.|+|.|||+|.|
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IAR 143 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIAR 143 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEE
Confidence 45567899999999999998755322222 1122211 01 1248999999999999999999
No 144
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=52.37 E-value=33 Score=37.30 Aligned_cols=68 Identities=10% Similarity=0.185 Sum_probs=47.1
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch--hhHHHHHHHHHHcCCeEEeecCCceeee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~aE 90 (538)
..+...+.++.+++.|+-+=.+.+-..... ..+.|.|+.. -|..++++.+++.|++|++-.-|+|+-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 367789999999999998777766544333 3445555432 3899999999999999999988877654
No 145
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=51.18 E-value=1.4e+02 Score=31.04 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=81.0
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLA 102 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~ 102 (538)
-+..+.+|+.++.-+. +|++|- =|- +-|+.++..|.+.|++|+|.. |+..
T Consensus 62 a~~~~sDLe~l~~~t~-~IR~Y~-----------sDC---n~le~v~pAa~~~g~kv~lGi---------------w~td 111 (305)
T COG5309 62 ADQVASDLELLASYTH-SIRTYG-----------SDC---NTLENVLPAAEASGFKVFLGI---------------WPTD 111 (305)
T ss_pred HHHHHhHHHHhccCCc-eEEEee-----------ccc---hhhhhhHHHHHhcCceEEEEE---------------eecc
Confidence 6778899999998887 999974 122 238889999999999999982 4433
Q ss_pred cCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEcccccc--CCCC---CcHHHHHHHHHHHHHhcCCceE
Q 009269 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF--GSYG---DDKEYLHHLVTLARAHLGKDII 177 (538)
Q Consensus 103 ~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEy--g~~~---~~~~y~~~L~~~~~~~~G~~v~ 177 (538)
+ + . ..+++ .++..+.+. ..-..|..|=|.||. +... .-.+|+...|.++++ +|.++|
T Consensus 112 d---~-------~--~~~~~---til~ay~~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~-agy~gp 173 (305)
T COG5309 112 D---I-------H--DAVEK---TILSAYLPY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKE-AGYDGP 173 (305)
T ss_pred c---h-------h--hhHHH---HHHHHHhcc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHh-cCCCCc
Confidence 1 1 1 12222 333344332 122579999999995 3332 245899999999997 899999
Q ss_pred EEEecCCC
Q 009269 178 LYTTDGGT 185 (538)
Q Consensus 178 l~t~dg~~ 185 (538)
+-|.|.+.
T Consensus 174 V~T~dsw~ 181 (305)
T COG5309 174 VTTVDSWN 181 (305)
T ss_pred eeecccce
Confidence 99999874
No 146
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.19 E-value=31 Score=34.65 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeec-chhhHHHHHHHHHHcCCeEEeec
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
+.+++.++.++++|++.|.+.-.-...++.. .=.++ ....+.+++++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4578899999999999998631100011111 00111 12458899999999999999885
No 147
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=49.14 E-value=24 Score=37.67 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=46.5
Q ss_pred eecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 15 DLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 15 ~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
+-++ |.|...-.-..+.++++|.++|.+.|+|.-.++. .-+-.-..+|.++.+.|+++||-+++-+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3444 6654443334678999999999999999954331 0112234579999999999999988863
No 148
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=49.02 E-value=13 Score=34.20 Aligned_cols=28 Identities=29% Similarity=0.686 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHcCCeEEeecCCceeeec
Q 009269 63 ADLVSFLKLCQKLDLLVMLRPGPYICAEW 91 (538)
Q Consensus 63 ~Dl~~fl~la~~~GL~VilrpGPyi~aEw 91 (538)
.||.-||+.|++.|+.|++-.-| +++.|
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~w 63 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKW 63 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHH
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHH
Confidence 58999999999999998887555 55554
No 149
>PRK10658 putative alpha-glucosidase; Provisional
Probab=48.77 E-value=2.6e+02 Score=32.65 Aligned_cols=68 Identities=12% Similarity=-0.046 Sum_probs=47.0
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCC-CCceeecch--hhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
.+.+...+.++++|+.||-+=.+++-+.++... -+.|.|+-. -|..++++..++.|++|++..=|||.
T Consensus 280 ~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~ 350 (665)
T PRK10658 280 YDEATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIA 350 (665)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcC
Confidence 345667888999999998754444433333321 235555432 38999999999999999999767663
No 150
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=48.68 E-value=33 Score=37.30 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCEEEE-ccc---CCCcCCCCCce-----eecchhhHHHHHHHHHHcCCeEEee
Q 009269 28 DRLLRAKALGLNTIQT-YVP---WNLHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 28 ~~l~k~ka~G~NtV~~-yv~---Wn~hEp~~G~f-----dF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+.|.-+|.+|+++|-+ +++ -..|---.-.| .|....|++++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 7889999999999966 333 12222111111 5777889999999999999999987
No 151
>PRK09875 putative hydrolase; Provisional
Probab=48.21 E-value=1e+02 Score=32.13 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=48.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccc
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLA 102 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~ 102 (538)
.+.-.+.|+.+|++|.+||=- ..+ ..-.||...+.+++++-|+.||...|-|.-. -.|.|+..
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMRETGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHHHhCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 455677889999999998732 221 1224799999999999999999999998543 37888875
No 152
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=47.54 E-value=40 Score=34.21 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=38.7
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..++|++|++.|-+ -|..++--|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 45899999999988 565555555433 56799999999999999999954
No 153
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=47.04 E-value=19 Score=38.07 Aligned_cols=90 Identities=18% Similarity=0.426 Sum_probs=52.6
Q ss_pred eEEEEEeec------CCCCCHhhHHHHHHHHHHc-CCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEe
Q 009269 9 FRIIGGDLH------YFRILPQHWEDRLLRAKAL-GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 9 ~~i~sG~~H------y~r~p~~~W~~~l~k~ka~-G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vil 81 (538)
++..||. | +.+++.+-|++-.|+-..+ |+|.++-| |.+-++.. + ...++|++|+++|-+.|-
T Consensus 103 vq~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~-----~---~~A~lLkl~akYGGy~iW 171 (324)
T PF08306_consen 103 VQPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS-----E---HFADLLKLCAKYGGYFIW 171 (324)
T ss_dssp EEEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH-----H---HHHHHHHHHHHTT-EEEE
T ss_pred EEecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh-----H---HHHHHHHHHHHhCceEEe
Confidence 3566777 7 4457777778888887765 99988875 54444433 3 489999999999998832
Q ss_pred ecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHH
Q 009269 82 RPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERW 123 (538)
Q Consensus 82 rpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~ 123 (538)
- +--..+.+-.|+-. ..++.|.+++++|
T Consensus 172 s------~~~N~~am~k~~~~--------~~~~~~~~A~~~y 199 (324)
T PF08306_consen 172 S------DQNNPIAMEKWFGE--------QRNPEFKDACEKY 199 (324)
T ss_dssp E---------GGGHHHHHCCC--------CCSHHHHHHHHHH
T ss_pred e------cCCChHHHHHhhhh--------ccCHHHHHHHHHh
Confidence 1 11111123334432 2678898888885
No 154
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=46.59 E-value=36 Score=34.09 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
+..++.++.++++|..+|.+...+..-...+.+..-.....|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 457888999999999999874433211111111111122457888999999999999986
No 155
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=45.40 E-value=4e+02 Score=28.28 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=47.9
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEccc----CCCcCCC------CCceeec---chhhHHHHHHHHHHcCCeEEee
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEPK------PGKLVFS---GIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp~------~G~fdF~---g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+|.+..++.|+.|....+|+...++- |.+--+. .|.|.=+ -..|+..+++.|++.|+.||.-
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 57899999999999999999998864 6554321 3333211 1358999999999999999987
No 156
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=45.09 E-value=33 Score=40.41 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=49.9
Q ss_pred ecCCCCC---HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecc----hhhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 16 LHYFRIL---PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG----IADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 16 ~Hy~r~p---~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g----~~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
+|+.|+- -+..+++.+.++++|+. +-+.|+..--..+.=||+- ..++..|++-.++.|+++|+-+=|+|.
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiP---ld~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is 376 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIP---LDVIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFIS 376 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCC---cceeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccc
Confidence 4444543 55668999999999999 3344444443444445542 246899999999999999998888875
Q ss_pred e
Q 009269 89 A 89 (538)
Q Consensus 89 a 89 (538)
.
T Consensus 377 ~ 377 (805)
T KOG1065|consen 377 T 377 (805)
T ss_pred c
Confidence 3
No 157
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=44.89 E-value=54 Score=29.14 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=32.4
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEE
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vi 80 (538)
+|++...+.++.++++|+..|-.. +| ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 679999999999999998877652 22 235899999999999876
No 158
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=44.70 E-value=3.7e+02 Score=29.27 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=58.5
Q ss_pred HhhHHHHHHHHHHc--CCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEE-eecCCceeeecCCCCCccc
Q 009269 23 PQHWEDRLLRAKAL--GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM-LRPGPYICAEWDLGGFPAW 99 (538)
Q Consensus 23 ~~~W~~~l~k~ka~--G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vi-lrpGPyi~aEw~~GG~P~W 99 (538)
..+..+++.+++.+ +--.|...++|... .|+.++.++++++||.|. +-|+=+-. |.
T Consensus 39 ~~e~~~d~~~v~~L~~~~~~v~lH~~~d~~------------~d~~~~~~~l~~~GL~v~~i~p~~f~~--------~~- 97 (378)
T TIGR02635 39 VFEKIEDAALVHRLTGICPTVALHIPWDRV------------EDYEELARYAEELGLKIGAINPNLFQD--------DD- 97 (378)
T ss_pred HHHHHHHHHHHHhhcCCCCceeeccCCccc------------cCHHHHHHHHHHcCCceeeeeCCccCC--------cc-
Confidence 44556666666665 33466777777221 358899999999999987 56551100 11
Q ss_pred ccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEE
Q 009269 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (538)
Q Consensus 100 l~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII 143 (538)
++...+-+.||..++..-.+.++.+..-+.+ |.+.|
T Consensus 98 ----~~~GSLt~pD~~vR~~AIe~~k~~idiA~eL----Ga~~I 133 (378)
T TIGR02635 98 ----YKFGSLTHPDKRIRRKAIDHLLECVDIAKKT----GSKDI 133 (378)
T ss_pred ----cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCeE
Confidence 1222466778888888888777777666654 55543
No 159
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=44.37 E-value=72 Score=32.72 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=41.6
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.|.+.-++++++..+.|+..|+++++.+. ...+...++.|++.|+.|.+-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEE
Confidence 45566788999999999999999988665 235899999999999988764
No 160
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.02 E-value=4.1e+02 Score=27.94 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=47.5
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEcc----cCCCcCCC------CCcee-ecchhhHHHHHHHHHHcCCeEEee
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYV----PWNLHEPK------PGKLV-FSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv----~Wn~hEp~------~G~fd-F~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+|.+..++.|+.|...++|+...++ .|.+--+. .|.+. |=-..|+.++++.|++.|+.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEe
Confidence 6799999999999999999999997 47543211 22211 112358999999999999999987
No 161
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=43.74 E-value=27 Score=29.40 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=24.4
Q ss_pred cCCCCEEEEccccc-cCCCC----------CcHHHHHHHHHHHHHh--cCCceEEE
Q 009269 137 DIGGPIVMVQIENE-FGSYG----------DDKEYLHHLVTLARAH--LGKDIILY 179 (538)
Q Consensus 137 ~~gGpII~~QVENE-yg~~~----------~~~~y~~~L~~~~~~~--~G~~v~l~ 179 (538)
++...|.+|+|-|| .+++. ....|.++|+++++.. ..-+.|+.
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt 61 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVT 61 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 34568999999999 55322 1345667777666442 34455653
No 162
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=43.73 E-value=59 Score=33.63 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC--CCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
++..++.++.+++.|.+.|.+|.-+..--+. ++...++ ...+.+++++|+++|+.|.+-
T Consensus 119 ~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 119 VEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEE
Confidence 7889999999999999999999865322111 2211222 234889999999999998877
No 163
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.33 E-value=59 Score=34.46 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=50.9
Q ss_pred ecCCCC---CHhhHHHHHHHHHHcCCCEEEEcc----------cCCCcCCC---------CCceeecc---hhhHHHHHH
Q 009269 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYV----------PWNLHEPK---------PGKLVFSG---IADLVSFLK 70 (538)
Q Consensus 16 ~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv----------~Wn~hEp~---------~G~fdF~g---~~Dl~~fl~ 70 (538)
+|..|+ ..++-++.++++++.||.+=-+++ .|+...-. -+.++|.. .-|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 367789999999999998776655 24432211 12334431 127999999
Q ss_pred HHHHcCCeEEeecCCcee
Q 009269 71 LCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 71 la~~~GL~VilrpGPyi~ 88 (538)
..++.|++|++..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998777775
No 164
>PRK08227 autoinducer 2 aldolase; Validated
Probab=42.03 E-value=61 Score=33.45 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEe
Q 009269 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 29 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vil 81 (538)
..+.+-++|..+|.++|+|.. .+.-.-..|+.+..+.|++.||-+|.
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs------~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGS------EYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 466788999999999999982 22233456899999999999998886
No 165
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=41.84 E-value=40 Score=39.40 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=40.5
Q ss_pred HHHHHHHcCCCEEEE-cccCCCcCCCC---C-ceeec----------------c-----hhhHHHHHHHHHHcCCeEEee
Q 009269 29 RLLRAKALGLNTIQT-YVPWNLHEPKP---G-KLVFS----------------G-----IADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 29 ~l~k~ka~G~NtV~~-yv~Wn~hEp~~---G-~fdF~----------------g-----~~Dl~~fl~la~~~GL~Vilr 82 (538)
.|.-+|.+|+++|+. +|+.-..|+.. | .|+|. . .+.+..+++.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999998 67755555443 3 22222 2 347899999999999999998
No 166
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=41.58 E-value=1.4e+02 Score=30.66 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=53.2
Q ss_pred ecCEeeEEEEEeecCCCC-CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeec--chhhHHHHHHHHHHcCCeEE
Q 009269 4 KDGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLVM 80 (538)
Q Consensus 4 ~dG~p~~i~sG~~Hy~r~-p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~--g~~Dl~~fl~la~~~GL~Vi 80 (538)
+.+.+++++.|=- -+ .++.-.+..+++|++|+..++.|.+=+.-.| +.|. +..-+..+-+.|++.||.++
T Consensus 23 ~g~~~~~~iaGPC---sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~~~~~~~Gl~~~ 95 (266)
T PRK13398 23 IGGEEKIIIAGPC---AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILKEVGDKYNLPVV 95 (266)
T ss_pred EcCCCEEEEEeCC---cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHHHHHHHcCCCEE
Confidence 4445777777721 11 3777888999999999999999976543332 2454 45568999999999999988
Q ss_pred eec
Q 009269 81 LRP 83 (538)
Q Consensus 81 lrp 83 (538)
-.|
T Consensus 96 te~ 98 (266)
T PRK13398 96 TEV 98 (266)
T ss_pred Eee
Confidence 873
No 167
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=40.88 E-value=46 Score=33.03 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
+.+++.++.++++|..+|.+...+..-++..-+..-.....+.++.++|++.|+.+.+-|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 678888999999999999864322110100001101112358889999999999999886
No 168
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=39.15 E-value=69 Score=33.61 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=47.6
Q ss_pred EEEEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcC-------------CCCCceeecchhhHHHHHHHHHHc
Q 009269 10 RIIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-------------PKPGKLVFSGIADLVSFLKLCQKL 75 (538)
Q Consensus 10 ~i~sG~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-------------p~~G~fdF~g~~Dl~~fl~la~~~ 75 (538)
.+.-|+-+.. |||.+.|.+.++.+++.|+..| +.+.-.| ..+...|..|..+|.++..+.+..
T Consensus 187 ~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a 263 (352)
T PRK10422 187 VIQPTARQIFKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHA 263 (352)
T ss_pred EEecCCCccccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhC
Confidence 3344444433 6999999999999988887655 3344322 112346677777777777777777
Q ss_pred CCeEEeecCC
Q 009269 76 DLLVMLRPGP 85 (538)
Q Consensus 76 GL~VilrpGP 85 (538)
.+.|--.-||
T Consensus 264 ~l~v~nDSGp 273 (352)
T PRK10422 264 QLFIGVDSAP 273 (352)
T ss_pred CEEEecCCHH
Confidence 7766666555
No 169
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=38.10 E-value=1.2e+02 Score=31.86 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=49.8
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEccc-CCC-cCCCCCc---eeecch----hhHHHHHHHHHHcCCeEEeecCCcee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVP-WNL-HEPKPGK---LVFSGI----ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~-Wn~-hEp~~G~---fdF~g~----~Dl~~fl~la~~~GL~VilrpGPyi~ 88 (538)
+.++-.+.++++++.||-+=.+++- |.. ++..-|. ++|+.+ -|..++++..++.|++|++-.=|+|+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~ 96 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLA 96 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCcee
Confidence 7888899999999999987767664 532 2332232 245432 38999999999999999998767765
No 170
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=37.79 E-value=84 Score=36.14 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=46.2
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+-|.|.|.+.-+..++++.++|+..|+++.+.|.. .++...++.|+++|+.+..-
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~~ 143 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQGT 143 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 45677788888999999999999999998877764 46899999999999986544
No 171
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=37.53 E-value=73 Score=32.54 Aligned_cols=50 Identities=18% Similarity=0.034 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 29 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
...++|++|++.|-+ -|..++-.|.= -+..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~E-td~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFGE-TDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccCc-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345899999999988 56655555542 223344445559999999999965
No 172
>PRK15492 triosephosphate isomerase; Provisional
Probab=37.17 E-value=75 Score=32.65 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=37.8
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..++|++|++.|-+ -|..++-.|. +-+..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999998 6665655554 2345577788899999999999954
No 173
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=37.01 E-value=53 Score=33.48 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCEEEEcccCCC---cCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNL---HEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~---hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
++.+++||++|++.|...+- .. ++.--+..+|+ +..+.++.|+++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 56788999999999988655 21 11111122333 3667788999999986544
No 174
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.00 E-value=61 Score=24.59 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=39.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeE
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~V 79 (538)
|..-.+.+.-+.+.|+|.++++. +.........+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44567788899999999998876 3332234455555533 3899999999999865
No 175
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=36.17 E-value=83 Score=25.57 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.8
Q ss_pred CCccceEEEEeCCCcCCCCCCCeeEEEEEeec
Q 009269 405 SKVHDRAQVFISCPTEDNSGRPTYVGTIERWS 436 (538)
Q Consensus 405 ~~v~Dra~Vfvdg~~~~~~~~~~~vg~l~r~~ 436 (538)
++..|-|-||+++ +++|+|.|+.
T Consensus 24 pk~~dsaEV~~g~---------EfiGvi~~De 46 (63)
T PF11324_consen 24 PKKDDSAEVYIGD---------EFIGVIYRDE 46 (63)
T ss_pred CCCCCceEEEeCC---------EEEEEEEeec
Confidence 3567999999998 8999999865
No 176
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=35.95 E-value=4.6e+02 Score=26.24 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=84.6
Q ss_pred eeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEccc-CCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCc
Q 009269 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVP-WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (538)
Q Consensus 8 p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~-Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPy 86 (538)
.+.+++|+....|.-...-+...+.+.+.|+.+-.+.+. ..+.. ++. +..-.+.++.+..++.+-.||+.|
T Consensus 28 kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~--~d~---~~~p~v~~l~~~v~~ADgvii~TP--- 99 (219)
T TIGR02690 28 RILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPD--AAH---ADHPKVRELRQLSEWSEGQVWCSP--- 99 (219)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCC--cCc---ccCHHHHHHHHHHHhCCEEEEeCC---
Confidence 468899999998888777777777788778876555542 22221 111 112257888888899999999887
Q ss_pred eeeecCCCCCcc-------ccccc---------CCCceecCCCHHHH-HHHHHHHHHHHHHhccccccCCCCEEEEcccc
Q 009269 87 ICAEWDLGGFPA-------WLLAK---------KPALKLRSSDRAYL-QLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (538)
Q Consensus 87 i~aEw~~GG~P~-------Wl~~~---------~p~~~~R~~d~~yl-~~~~~~~~~l~~~l~~~~~~~gGpII~~QVEN 149 (538)
|. +|++|. |+.+. .|-..+ +...... .....-++.++..+.-+.... .|.+.+..+
T Consensus 100 ---EY-n~sipg~LKNaiDwls~~~~~~~~~~~Kpvaiv-gaSgg~~g~ra~~~LR~vl~~l~a~v~p~--~v~i~~a~~ 172 (219)
T TIGR02690 100 ---ER-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVM-QVSGGSQSFNAVNILRRLGRWMRMPTIPN--QSSVAKAFD 172 (219)
T ss_pred ---cc-ccCcCHHHHHHHHhcccCcccccccCCCcEEEE-EeCCcHhHHHHHHHHHHHHHHCCCccccc--hhhhhhhHh
Confidence 44 566665 66552 121112 2122211 122222344444443332222 456666677
Q ss_pred ccCCCC--CcHHHHHHHHHHHHH
Q 009269 150 EFGSYG--DDKEYLHHLVTLARA 170 (538)
Q Consensus 150 Eyg~~~--~~~~y~~~L~~~~~~ 170 (538)
+++.-+ .+.+..+.|.+++.+
T Consensus 173 ~fd~~G~l~d~~~~~~l~~~l~~ 195 (219)
T TIGR02690 173 EFDEAGRMKPSDYYDRVVDVMEE 195 (219)
T ss_pred hcCcCCCCCCHHHHHHHHHHHHH
Confidence 776433 566666666666554
No 177
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=35.52 E-value=4.4e+02 Score=25.92 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=38.7
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+...+++.+++++++|+..|++.- .+.+..+. .+++++.++++++||.+...
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~~-~~~~~l~~~l~~~gl~i~~~ 64 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPADY-KELAELKELLADYGLEITSL 64 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCchh-hhHHHHHHHHHHcCcEEEee
Confidence 456788999999999999999965 12222211 12799999999999988764
No 178
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=35.32 E-value=75 Score=32.09 Aligned_cols=58 Identities=17% Similarity=0.059 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeec-chhhHHHHHHHHHHcCCeEEeec
Q 009269 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.+++.++.++++|.++|.+.-....-++. ..-.+. ....+.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 46788999999999999763110000000 000111 12357889999999999999984
No 179
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=34.53 E-value=1.1e+02 Score=37.39 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=55.1
Q ss_pred ecCCCC---CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch--hhHHHHHHHHHHcCCeEEeecCCceeee
Q 009269 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (538)
Q Consensus 16 ~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~Dl~~fl~la~~~GL~VilrpGPyi~aE 90 (538)
+|..|+ +.+..++.++++++.||-+=.+++-|.++.- -..|.|+-. -|..++++..++.|+++++-.-|+|..+
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 344453 3667789999999999998887777766652 334555432 3899999999999999988877777653
No 180
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=34.47 E-value=32 Score=33.70 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=51.0
Q ss_pred eeEEEEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcC--------CCCC----ceeecchhhHHHHHHHHHH
Q 009269 8 PFRIIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHE--------PKPG----KLVFSGIADLVSFLKLCQK 74 (538)
Q Consensus 8 p~~i~sG~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE--------p~~G----~fdF~g~~Dl~~fl~la~~ 74 (538)
-+.+.-|.-+.. |||.+.|.+.++++++.| ..+.+.|.-.| ..++ ..++.+..+|..++.+.+.
T Consensus 107 ~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 107 YIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp EEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred eEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 344455555544 699999999999999998 55668887776 1233 6788888899999999999
Q ss_pred cCCeEEeecCC
Q 009269 75 LDLLVMLRPGP 85 (538)
Q Consensus 75 ~GL~VilrpGP 85 (538)
..+.|-..-||
T Consensus 184 a~~~I~~Dtg~ 194 (247)
T PF01075_consen 184 ADLVIGNDTGP 194 (247)
T ss_dssp SSEEEEESSHH
T ss_pred CCEEEecCChH
Confidence 99988887666
No 181
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=34.38 E-value=1.1e+02 Score=31.65 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=44.1
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecc---hhhHHHHHHHHHHcCCeEEee
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG---IADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g---~~Dl~~fl~la~~~GL~Vilr 82 (538)
..+..+.-+.-+.++|+.-|-+-.-|...+ ....+||+. ..||.++++.|++.|..|+|.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEE
Confidence 467788899999999999999998998722 345677763 579999999999999988887
No 182
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.35 E-value=50 Score=32.97 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=62.6
Q ss_pred CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCC-------C----Cccccccc-----C----------CCc
Q 009269 54 PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-------G----FPAWLLAK-----K----------PAL 107 (538)
Q Consensus 54 ~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~G-------G----~P~Wl~~~-----~----------p~~ 107 (538)
.+.|..+-+.++++.|+-|+..-=. |+|.+|..|-... | +=.|.-++ + ..|
T Consensus 74 ~~~~~v~~n~aF~~Vi~~CA~~~~~---r~~TWI~~~~~~aY~~Lh~~G~AHSvE~W~gdeLvGGlYGvalG~~F~GESM 150 (221)
T COG2360 74 QSPYRVRVNYAFAAVIEGCAATRPP---RDGTWINDEIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVALGRAFFGESM 150 (221)
T ss_pred cCCeEEEechhHHHHHHHHhccCCC---CCCcccCHHHHHHHHHHHHhccceeEEEeeCCeeehhhhhhhhcceeechhh
Confidence 3456666677889999999864322 7777777654321 1 12232221 0 011
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEcccccc----CCCC-CcHHHHHHHHH
Q 009269 108 KLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF----GSYG-DDKEYLHHLVT 166 (538)
Q Consensus 108 ~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEy----g~~~-~~~~y~~~L~~ 166 (538)
--|.. ++.+--+-.+++++.. +|+.+|=.|+.||. |.+. .+++|.+.|++
T Consensus 151 Fsr~~-----nASKialv~lv~~L~~----~g~~LiD~Q~~n~HL~~~GA~~ipr~~y~~~L~~ 205 (221)
T COG2360 151 FSRAT-----NASKIALVHLVEHLRR----HGFVLIDCQVLNEHLASLGAYEIPRKEYLNYLRR 205 (221)
T ss_pred hhcCC-----CchHHHHHHHHHHHHh----cCceEEeeecCCHHHHhcCCeecCHHHHHHHHHH
Confidence 11222 3445556667777765 48899999999995 5555 78999999998
No 183
>PLN02561 triosephosphate isomerase
Probab=34.34 E-value=86 Score=32.13 Aligned_cols=49 Identities=16% Similarity=-0.018 Sum_probs=38.0
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 45889999999888 565555555433 45678888899999999999965
No 184
>PRK01060 endonuclease IV; Provisional
Probab=34.22 E-value=4.9e+02 Score=26.03 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=39.4
Q ss_pred CCHhhHHHHHHHHHHcCCCE--EEE--cccCCCcCCCCCceeecchhhHHHHHHHHHHcCCe-EEeecC
Q 009269 21 ILPQHWEDRLLRAKALGLNT--IQT--YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRPG 84 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~Nt--V~~--yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~-VilrpG 84 (538)
+.++.-+..-+.+++.|+.. |.. ..+.|+..|.|...+.+ ...+.+.+++|++.|.. |++.||
T Consensus 44 ~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s-~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 44 LEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKS-RDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34445555555677889873 332 22346666666555444 24589999999999996 555554
No 185
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=33.34 E-value=1.5e+02 Score=31.70 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=53.3
Q ss_pred eecCEeeEEEEEeecCCCC-CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecc--hhhHHHHHHHHHHcCCeE
Q 009269 3 RKDGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLV 79 (538)
Q Consensus 3 ~~dG~p~~i~sG~~Hy~r~-p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g--~~Dl~~fl~la~~~GL~V 79 (538)
.+.|.++.++.| +--+ .++.-.+..+.+|++|.+.++.|++= |+---|.|.| ..-|.-+.+.|++.||.+
T Consensus 88 ~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v 160 (335)
T PRK08673 88 EIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGLPI 160 (335)
T ss_pred EECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCCcE
Confidence 445667778888 2122 36777888889999999999999884 3333356664 345777778899999999
Q ss_pred Eeec
Q 009269 80 MLRP 83 (538)
Q Consensus 80 ilrp 83 (538)
+-.|
T Consensus 161 ~tev 164 (335)
T PRK08673 161 VTEV 164 (335)
T ss_pred EEee
Confidence 8873
No 186
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=33.19 E-value=6.1e+02 Score=26.82 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=79.9
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHH---HHcCCeEEeecCCceeeecCCCCC-c
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLC---QKLDLLVMLRPGPYICAEWDLGGF-P 97 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la---~~~GL~VilrpGPyi~aEw~~GG~-P 97 (538)
.++.++.-++.+|+.|++.-..|-.|- .|.+=|++-++.. .+.+|...|. |.+.-. =
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~~ 116 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC--------WANENWTR 116 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhhh
Confidence 378889999999999999999998885 2322244444443 3456666666 332211 0
Q ss_pred ccccccCCCceecCCCHHHHHHHHHHHHHHHHHhcc--ccccCCCCEEEEccccccCCCCCcHHHHHHHHHHHHHhcCCc
Q 009269 98 AWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP--LLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKD 175 (538)
Q Consensus 98 ~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~--~~~~~gGpII~~QVENEyg~~~~~~~y~~~L~~~~~~~~G~~ 175 (538)
.|-.. ...+.+-...+. .+..++.++.|++.++. +.--+|-||+++=--.+. .+-++.++.+++.+++ .|+.
T Consensus 117 ~w~g~-~~~~l~~q~y~~-~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~---pd~~~~~~~wr~~a~~-~G~~ 190 (345)
T PF14307_consen 117 RWDGR-NNEILIEQKYSG-EDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI---PDIKEMIERWREEAKE-AGLP 190 (345)
T ss_pred ccCCC-CccccccccCCc-hhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc---cCHHHHHHHHHHHHHH-cCCC
Confidence 12211 122222111110 02235556667777753 333478899987544332 3667899999999999 7887
Q ss_pred eEEEEe
Q 009269 176 IILYTT 181 (538)
Q Consensus 176 v~l~t~ 181 (538)
.+.+-.
T Consensus 191 giyii~ 196 (345)
T PF14307_consen 191 GIYIIA 196 (345)
T ss_pred ceEEEE
Confidence 655433
No 187
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=33.15 E-value=83 Score=32.74 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=51.2
Q ss_pred EEEEeecC-CCCCHhhHHHHHHHHHHcCCCEEEEcccCC-------C-cC--CCCCceeecchhhHHHHHHHHHHcCCeE
Q 009269 11 IIGGDLHY-FRILPQHWEDRLLRAKALGLNTIQTYVPWN-------L-HE--PKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (538)
Q Consensus 11 i~sG~~Hy-~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn-------~-hE--p~~G~fdF~g~~Dl~~fl~la~~~GL~V 79 (538)
+..|+-+. =|||.+.|.+.++.+.+-|+..|-++-+-. . .+ +.+...|+.|..+|.+++.+.+...+.|
T Consensus 186 i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~V 265 (344)
T TIGR02201 186 IQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFI 265 (344)
T ss_pred EeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEE
Confidence 33344333 379999999999999887877665432210 0 01 2234688888888999988888888877
Q ss_pred EeecCC
Q 009269 80 MLRPGP 85 (538)
Q Consensus 80 ilrpGP 85 (538)
-..-||
T Consensus 266 s~DSGp 271 (344)
T TIGR02201 266 GVDSVP 271 (344)
T ss_pred ecCCHH
Confidence 777666
No 188
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=33.12 E-value=86 Score=31.08 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
..++|++|++.|-+ -|..++ |.. .|+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~E---tdi~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKL---ADIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCc---cHHHHHHHHHHHCCCEEEEEE
Confidence 45899999998888 454444 433 349999999999999999984
No 189
>PTZ00333 triosephosphate isomerase; Provisional
Probab=32.04 E-value=99 Score=31.69 Aligned_cols=49 Identities=20% Similarity=0.034 Sum_probs=39.1
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..++|++|++.|-+ -|..++-.|.= .+.++.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~E-td~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFGE-TNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCC-CcHHHHHHHHHHHHCCCEEEEEcC
Confidence 35899999999998 66666666643 346789999999999999999965
No 190
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=31.85 E-value=1.9e+02 Score=30.59 Aligned_cols=120 Identities=22% Similarity=0.182 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCC
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPA 106 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~ 106 (538)
...+...++.|.+||=.- .+ =.--||..+..+.+++-||.+|...|+|.-+.| |.|+... |
T Consensus 51 ~~e~~~~~a~Gg~TIVD~--------T~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~-----p~~~~~~-~- 111 (316)
T COG1735 51 IAELKRLMARGGQTIVDA--------TN----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFH-----PEYFALR-P- 111 (316)
T ss_pred HHHHHHHHHcCCCeEeeC--------Cc----cccCcCHHHHHHHHHHhCCcEEEeccccccccc-----hhHHhhC-C-
Confidence 446677778899988541 11 112478999999999999999999999998885 4777652 2
Q ss_pred ceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCC-CcHHHHHHHHHHHHHhcCCceEEEEe
Q 009269 107 LKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DDKEYLHHLVTLARAHLGKDIILYTT 181 (538)
Q Consensus 107 ~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~-~~~~y~~~L~~~~~~~~G~~v~l~t~ 181 (538)
++.+.+-++..+..= =.|+=|..=|==|-|.+. =...-.+.|+..++++.--.+|+-|=
T Consensus 112 -------------i~~~ae~~v~ei~~G---i~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tH 171 (316)
T COG1735 112 -------------IEELAEFVVKEIEEG---IAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTH 171 (316)
T ss_pred -------------HHHHHHHHHHHHHhc---ccCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEe
Confidence 344444455555421 124444444445666554 23445667777777765556676543
No 191
>PRK14567 triosephosphate isomerase; Provisional
Probab=31.80 E-value=1e+02 Score=31.57 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=37.3
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..++|++|++.|-+ -|..++-.|. +-+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 35889999999888 5655555554 2344577888899999999999955
No 192
>PRK14566 triosephosphate isomerase; Provisional
Probab=31.78 E-value=1e+02 Score=31.67 Aligned_cols=49 Identities=16% Similarity=-0.016 Sum_probs=37.3
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..++|++|++.|-+ -|..++..|.= -+..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYGE-TSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCCc-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999988 56555555542 334577788999999999999954
No 193
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=31.72 E-value=1.8e+02 Score=33.44 Aligned_cols=110 Identities=13% Similarity=0.027 Sum_probs=71.0
Q ss_pred EeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCc
Q 009269 7 EPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (538)
Q Consensus 7 ~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPy 86 (538)
++-+.+++..|+++-+.+.=-++|.+-.++|...+-|-.+++. + .+.+|++.|++.++.||...-|-
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4457888888877655554445666667899999999666543 2 38888888887788888876654
Q ss_pred eee--------ecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhc
Q 009269 87 ICA--------EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (538)
Q Consensus 87 i~a--------Ew~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~ 132 (538)
... +|..--+|.|+.++.-.. .+....+++--.+...++..+.
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~~---~d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRAV---EDKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHH
Confidence 332 244445788888742111 1223556666666666666654
No 194
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.58 E-value=4.3e+02 Score=26.79 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeec--chhhHHHHHHHHHHcCCeE--EeecCCceeeecCCCCCcccccc
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLV--MLRPGPYICAEWDLGGFPAWLLA 102 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~--g~~Dl~~fl~la~~~GL~V--ilrpGPyi~aEw~~GG~P~Wl~~ 102 (538)
.+.++.++++|+++|++++-. |..|... ...+..+|-+.++++++.+ +.-=+||. .
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~------P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~-------------i- 73 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS------PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL-------------I- 73 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC------ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-------------e-
Confidence 568899999999999996542 2222222 2345788888899998863 33335553 1
Q ss_pred cCCCceecCCCHHHHHHHHHHHHHHHHHhccc
Q 009269 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (538)
Q Consensus 103 ~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~ 134 (538)
-+-+.|+.-++...+.+.+.+..-+.+
T Consensus 74 -----Nlas~~~~~r~~sv~~~~~~i~~A~~l 100 (274)
T TIGR00587 74 -----NLASPDEEKEEKSLDVLDEELKRCELL 100 (274)
T ss_pred -----ecCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 122446666666666666666555444
No 195
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=31.54 E-value=1.1e+02 Score=31.99 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=44.1
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEccc----CCCcCC------CCCcee------ecchhhHHHHHHHHHHcCCeEEee
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLV------FSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp------~~G~fd------F~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.|.+..++.|+.|...++|++..++. |.+.-+ +.|.+. +=-..|+.++++.|++.|+.||..
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 46889999999999999999999885 443321 233222 212358999999999999999987
No 196
>PRK00870 haloalkane dehalogenase; Provisional
Probab=30.98 E-value=1.6e+02 Score=29.62 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=48.9
Q ss_pred CEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCC---CceeecchhhHHHHHHHHHHcCC-eEEe
Q 009269 6 GEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKP---GKLVFSGIADLVSFLKLCQKLDL-LVML 81 (538)
Q Consensus 6 G~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~---G~fdF~g~~Dl~~fl~la~~~GL-~Vil 81 (538)
|++++++.|- -.....|...++.+.+.|+++|..-.+.--....+ ..|+|+. ..+.+.++.++.++ .|++
T Consensus 46 ~~~lvliHG~----~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~--~a~~l~~~l~~l~~~~v~l 119 (302)
T PRK00870 46 GPPVLLLHGE----PSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYAR--HVEWMRSWFEQLDLTDVTL 119 (302)
T ss_pred CCEEEEECCC----CCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHH--HHHHHHHHHHHcCCCCEEE
Confidence 4566676662 23466899999989888999999877754333222 2355543 23444445555666 3322
Q ss_pred ecCCceeeecCCCCCccc
Q 009269 82 RPGPYICAEWDLGGFPAW 99 (538)
Q Consensus 82 rpGPyi~aEw~~GG~P~W 99 (538)
- -++.||.-+.
T Consensus 120 v-------GhS~Gg~ia~ 130 (302)
T PRK00870 120 V-------CQDWGGLIGL 130 (302)
T ss_pred E-------EEChHHHHHH
Confidence 2 3788886554
No 197
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=30.66 E-value=54 Score=33.95 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=36.3
Q ss_pred cCCCCchhhcCC------cccEEEEEeeeCCCC-------CCcccccCCccceEEEEeCC
Q 009269 371 SENPLSMESVGQ------MFGFLLYVSEFGGKD-------YGSSLLISKVHDRAQVFISC 417 (538)
Q Consensus 371 s~~P~smE~lgQ------~~GyvlY~t~i~~~~-------~~~~L~~~~v~Dra~Vfvdg 417 (538)
...|-++.+++| .+|.++|+-++..+. ....|.+..+|-+|.|+|||
T Consensus 68 mpvpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng 127 (297)
T KOG2024|consen 68 MPVPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNG 127 (297)
T ss_pred cccccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcc
Confidence 345666777776 479999999887652 23457789999999999997
No 198
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=30.16 E-value=1.1e+02 Score=31.27 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=48.4
Q ss_pred eeEEEEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEcccCCCc-C---------CCCCceeecchhhHHHHHHHHHHcC
Q 009269 8 PFRIIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLH-E---------PKPGKLVFSGIADLVSFLKLCQKLD 76 (538)
Q Consensus 8 p~~i~sG~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~h-E---------p~~G~fdF~g~~Dl~~fl~la~~~G 76 (538)
-+.+.-|.-+.. |||.+.|.+.++.+...|+..|=+ +.-- | ..++. ++.|..+|.+++.+.+...
T Consensus 181 ~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~---~g~~~e~~~~~~i~~~~~~~-~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 181 YAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLP---WGNDAEKQRAERIAEALPGA-VVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred EEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEe---CCCHHHHHHHHHHHhhCCCC-eecCCCCHHHHHHHHHcCC
Confidence 344555554555 699999999999998778776633 2211 1 11222 6667778888888877777
Q ss_pred CeEEeecCC
Q 009269 77 LLVMLRPGP 85 (538)
Q Consensus 77 L~VilrpGP 85 (538)
+.|-..-||
T Consensus 257 l~I~~DSgp 265 (319)
T TIGR02193 257 AVVGVDTGL 265 (319)
T ss_pred EEEeCCChH
Confidence 776666555
No 199
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=30.07 E-value=76 Score=31.90 Aligned_cols=77 Identities=22% Similarity=0.168 Sum_probs=55.1
Q ss_pred EEEEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCC-----------CCCceeecchhhHHHHHHHHHHcCC
Q 009269 10 RIIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEP-----------KPGKLVFSGIADLVSFLKLCQKLDL 77 (538)
Q Consensus 10 ~i~sG~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-----------~~G~fdF~g~~Dl~~fl~la~~~GL 77 (538)
.+..|+-+.. +||.+.|.+.++.+++.|++.|-+.- -.|. .+...++.+..+|.+++.+.+...+
T Consensus 125 ~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~---~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 125 VLPPGASGPAKRWPAERFAALADRLLARGARVVLTGG---PAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred EECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEec---hhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 3344444444 58999999999999988888775432 2211 2455678888889999999999999
Q ss_pred eEEeecCCceee
Q 009269 78 LVMLRPGPYICA 89 (538)
Q Consensus 78 ~VilrpGPyi~a 89 (538)
.|-...||.--|
T Consensus 202 ~I~~Dsg~~HlA 213 (279)
T cd03789 202 VVTNDSGPMHLA 213 (279)
T ss_pred EEeeCCHHHHHH
Confidence 888887774433
No 200
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=30.02 E-value=3.6e+02 Score=25.85 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCCc
Q 009269 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPAL 107 (538)
Q Consensus 28 ~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~ 107 (538)
.+.+.+|+.|+..|-+=. .+|.-. -+..+..-++-|+++||.+ |-|..+- +..
T Consensus 13 i~w~~vk~~g~~fv~ika-------teg~~~--~D~~f~~n~~~A~~aGl~~----G~Yhf~~--------------~~~ 65 (196)
T cd06416 13 STFQCLKNNGYSFAIIRA-------YRSNGS--FDPNSVTNIKNARAAGLST----DVYFFPC--------------INC 65 (196)
T ss_pred hhhhHHHhCCceEEEEEE-------EccCCc--cChHHHHHHHHHHHcCCcc----ceEEEec--------------CCC
Confidence 455688999988665521 122111 1234788889999999865 6665321 110
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCC----cHHHHHHHHHHHHHhcCCceEEEEecC
Q 009269 108 KLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD----DKEYLHHLVTLARAHLGKDIILYTTDG 183 (538)
Q Consensus 108 ~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~----~~~y~~~L~~~~~~~~G~~v~l~t~dg 183 (538)
..++ .++++.+++.+-. . ....+.|++.||-.-+.+.. ..++++.+.+.++++ |..+.+||+-.
T Consensus 66 ---~~~~--~~Qa~~f~~~~~~----~--~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~-G~~~~iYt~~~ 133 (196)
T cd06416 66 ---CGSA--AGQVQTFLQYLKA----N--GIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKAL-GLKVGIYSSQY 133 (196)
T ss_pred ---CCCH--HHHHHHHHHHHHh----C--CCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHh-CCeEEEEcCcc
Confidence 1233 2566665555422 1 11234556788854233332 234666667777775 99999998754
No 201
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=29.93 E-value=26 Score=29.66 Aligned_cols=39 Identities=33% Similarity=0.508 Sum_probs=28.5
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCC
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDL 77 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL 77 (538)
....|-.-++.+-. .||.|..|||.. |.+||++|-|--+
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~q---Lr~flk~alkTpv 58 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFHQ---LRNFLKLALKTPV 58 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHHH---HHHHHHHHHT-TT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHHH---HHHHHHHHHcCCe
Confidence 36788888877764 489999999998 9999999987654
No 202
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.76 E-value=94 Score=31.30 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCCCEEEEcc--cCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 25 HWEDRLLRAKALGLNTIQTYV--PWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv--~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
..++.|+.++++|...|.+.- .|...+ .+-.++. -...+..++++|+++|+.+.+.+
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~~~~~~~~~-~~~~~~~-~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEQA-NNETRRR-FIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccccccc-HHHHHHH-HHHHHHHHHHHHHHhCCEEEEee
Confidence 467888999999999997621 110000 0111110 12357889999999999999986
No 203
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.74 E-value=60 Score=32.74 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
+.+++.++.++++|+++|.+...+....+.+..+. .-...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLK-RVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHH-HHHHHHHHHHHhccCCCCEEEEeCC
Confidence 45788999999999998876433221111111111 1123588888888999999999853
No 204
>PLN03231 putative alpha-galactosidase; Provisional
Probab=29.72 E-value=4.5e+02 Score=28.43 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=83.5
Q ss_pred CCHhhHHHHHH----HHHHcCCCEEEEcccCCCcCC----------------------CCCceeec------chhhHHHH
Q 009269 21 ILPQHWEDRLL----RAKALGLNTIQTYVPWNLHEP----------------------KPGKLVFS------GIADLVSF 68 (538)
Q Consensus 21 ~p~~~W~~~l~----k~ka~G~NtV~~yv~Wn~hEp----------------------~~G~fdF~------g~~Dl~~f 68 (538)
+..+.+++-.+ .||++|.+.|-+--.|...+. .|..=.|= | +..+
T Consensus 15 i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G---~k~l 91 (357)
T PLN03231 15 ISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKG---FAPI 91 (357)
T ss_pred cCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccC---cHHH
Confidence 45666666553 678999999999999975431 11111231 4 8999
Q ss_pred HHHHHHcCCe--EEeecCCceeeec---CCCCCcccccccC---------------CC--ceecCCCHHHHHHHHHHHHH
Q 009269 69 LKLCQKLDLL--VMLRPGPYICAEW---DLGGFPAWLLAKK---------------PA--LKLRSSDRAYLQLVERWWGV 126 (538)
Q Consensus 69 l~la~~~GL~--VilrpGPyi~aEw---~~GG~P~Wl~~~~---------------p~--~~~R~~d~~yl~~~~~~~~~ 126 (538)
.+.+++.||+ +-.-+|..-||-- +-.|.|.=+...+ +. +-+..+ ....+.|++.
T Consensus 92 ADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~----~~gaq~y~~~ 167 (357)
T PLN03231 92 AAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTS----SEGGKLFIQS 167 (357)
T ss_pred HHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhcccccccccccccccccccc----chhHHHHHHH
Confidence 9999999998 4556788888731 1112221000000 00 001111 2345678888
Q ss_pred HHHHhccccccCCCCEEEEccccccCCCC-CcHHHHHHHHHHHHHhcCCceEEEEec
Q 009269 127 LLPKIAPLLYDIGGPIVMVQIENEFGSYG-DDKEYLHHLVTLARAHLGKDIILYTTD 182 (538)
Q Consensus 127 l~~~l~~~~~~~gGpII~~QVENEyg~~~-~~~~y~~~L~~~~~~~~G~~v~l~t~d 182 (538)
+++.++.+ -|=.+=+++=++... ...+| ..+.+++++ .|.++.+-.|-
T Consensus 168 ~a~~fA~W------GVDylK~D~c~~~~~~~~~~y-~~m~~AL~~-tGRpIv~Slc~ 216 (357)
T PLN03231 168 LYDQYASW------GIDFIKHDCVFGAENPQLDEI-LTVSKAIRN-SGRPMIYSLSP 216 (357)
T ss_pred HHHHHHHh------CCCEEeecccCCCCcccHHHH-HHHHHHHHH-hCCCeEEEecC
Confidence 88888876 233444444333211 12234 467777777 68887766654
No 205
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=29.55 E-value=1.4e+02 Score=30.61 Aligned_cols=144 Identities=17% Similarity=0.129 Sum_probs=80.4
Q ss_pred CCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHH-HcCCeEEeecCCceeeecCCCCC
Q 009269 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQ-KLDLLVMLRPGPYICAEWDLGGF 96 (538)
Q Consensus 18 y~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~-~~GL~VilrpGPyi~aEw~~GG~ 96 (538)
-.+...+.-.+..+.+-++|++.|++..+....+...|..-|.....+.++.++.+ +.-+-+.+|++-. -
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~ 84 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND---------D 84 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC---------C
Confidence 34677888899999999999999999988876656667777766445666665553 4445566665421 1
Q ss_pred ccccccc-CCCce-ecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHHHHHHHHHHHHhcCC
Q 009269 97 PAWLLAK-KPALK-LRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGK 174 (538)
Q Consensus 97 P~Wl~~~-~p~~~-~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y~~~L~~~~~~~~G~ 174 (538)
..++... ...+. +|-..+. +.+++ +..+++..+. .|--+.++++.=++ .+.+|+..+.+.+.+ .|.
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~--~~~~~-~~~~i~~ak~-----~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~ 152 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHK--HEFDE-ALPLIKAIKE-----KGYEVFFNLMAISG---YSDEELLELLELVNE-IKP 152 (266)
T ss_pred HHHHHHHhcCCcCEEEEeccc--ccHHH-HHHHHHHHHH-----CCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCC
Confidence 1111110 01111 2322111 11111 1112333332 24455677766444 456677777777777 577
Q ss_pred ceEEEEecC
Q 009269 175 DIILYTTDG 183 (538)
Q Consensus 175 ~v~l~t~dg 183 (538)
+. ++-+|.
T Consensus 153 ~~-i~l~DT 160 (266)
T cd07944 153 DV-FYIVDS 160 (266)
T ss_pred CE-EEEecC
Confidence 74 455564
No 206
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=29.50 E-value=1.8e+02 Score=27.95 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=55.1
Q ss_pred EEeecCCCC-----CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCcee--ecc-hhhHHHHHHHHHHcCCeEEeecC
Q 009269 13 GGDLHYFRI-----LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLV--FSG-IADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 13 sG~~Hy~r~-----p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fd--F~g-~~Dl~~fl~la~~~GL~VilrpG 84 (538)
-|.+||+|. +.+..+.-++.++..++..- ..|-..|..++.+. .+. ...+.+|++..+++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~---~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKYG---TVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCcee---EEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 388999853 36788888999988655421 11223343334332 111 13578999999999999999988
Q ss_pred Cceeee----cC---CCCCcccccc
Q 009269 85 PYICAE----WD---LGGFPAWLLA 102 (538)
Q Consensus 85 Pyi~aE----w~---~GG~P~Wl~~ 102 (538)
++..-. .. ....|.|+..
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~ 156 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAH 156 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecC
Confidence 753211 11 3467889887
No 207
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=29.49 E-value=4.9e+02 Score=25.60 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=60.4
Q ss_pred CEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCC
Q 009269 6 GEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (538)
Q Consensus 6 G~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGP 85 (538)
.--+++++|.+-. +-+.+.....++.+++.... +|+...=||.. +. +.+++.+..++.+..+.. -..
T Consensus 41 ~~D~viiaGDl~~-~~~~~~~~~~l~~l~~l~~~---v~~V~GNHD~~-----~~---~~~~~~~~l~~~~~~~~~-n~~ 107 (232)
T cd07393 41 PEDIVLIPGDISW-AMKLEEAKLDLAWIDALPGT---KVLLKGNHDYW-----WG---SASKLRKALEESRLALLF-NNA 107 (232)
T ss_pred CCCEEEEcCCCcc-CCChHHHHHHHHHHHhCCCC---eEEEeCCcccc-----CC---CHHHHHHHHHhcCeEEec-cCc
Confidence 4457889999863 44566777788888886443 35555555531 12 256666666677765442 122
Q ss_pred ceeeecCCCCCcccccccCC-----CceecCCCHHHHHHHHHHHHHHHHHhcc
Q 009269 86 YICAEWDLGGFPAWLLAKKP-----ALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (538)
Q Consensus 86 yi~aEw~~GG~P~Wl~~~~p-----~~~~R~~d~~yl~~~~~~~~~l~~~l~~ 133 (538)
.+...+..-|...|.....+ +......+..+.+.-..|+++.++....
T Consensus 108 ~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~ 160 (232)
T cd07393 108 YIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKK 160 (232)
T ss_pred EEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 22222333344333322000 1111223444556666788777776643
No 208
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=29.16 E-value=1e+02 Score=34.07 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=57.0
Q ss_pred eecCCCC--CHhhHHHHHHHHHHcCCCEEEEc-ccCCCc--CC--CCCceeec-----c-----hhhHHHHHHHHH-HcC
Q 009269 15 DLHYFRI--LPQHWEDRLLRAKALGLNTIQTY-VPWNLH--EP--KPGKLVFS-----G-----IADLVSFLKLCQ-KLD 76 (538)
Q Consensus 15 ~~Hy~r~--p~~~W~~~l~k~ka~G~NtV~~y-v~Wn~h--Ep--~~G~fdF~-----g-----~~Dl~~fl~la~-~~G 76 (538)
+-+.+++ |-+.|++.|+.++++|+|+|..- +----. .| -.++..|+ . ..|+.+++..++ ++|
T Consensus 11 QTvlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ 90 (423)
T PF14701_consen 11 QTVLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYG 90 (423)
T ss_pred EEEhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcC
Confidence 3444443 45799999999999999999762 211100 00 11222222 1 248999999985 799
Q ss_pred CeEEeecCCceeeecCCCC-CcccccccCCCceecCCCHHHHH
Q 009269 77 LLVMLRPGPYICAEWDLGG-FPAWLLAKKPALKLRSSDRAYLQ 118 (538)
Q Consensus 77 L~VilrpGPyi~aEw~~GG-~P~Wl~~~~p~~~~R~~d~~yl~ 118 (538)
|.++... + |+.-. ==.||.. +|+.-.-..+.++|+
T Consensus 91 ll~~~Dv---V---~NHtA~nS~Wl~e-HPEagYN~~nsPHL~ 126 (423)
T PF14701_consen 91 LLSMTDV---V---LNHTANNSPWLRE-HPEAGYNLENSPHLR 126 (423)
T ss_pred ceEEEEE---e---eccCcCCChHHHh-CcccccCCCCCcchh
Confidence 9877662 1 22222 2358887 887644333334443
No 209
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=29.02 E-value=8.2e+02 Score=27.00 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCEEEEccc----CCCcCCCCCceeecchhhHHHHHHHHHHcCCeE--EeecCCceeeecCCCCCcccc
Q 009269 27 EDRLLRAKALGLNTIQTYVP----WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV--MLRPGPYICAEWDLGGFPAWL 100 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~----Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~V--ilrpGPyi~aEw~~GG~P~Wl 100 (538)
...++.+.+.|+|++++++- |..-... ..++++|.+.|+++||.+ ++-=+||..
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~--------~~~~~~f~~~~~~~gi~~~~i~~HapYlI------------ 203 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLS--------DETIDKFKENCKKYNYDPKFILPHGSYLI------------ 203 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCC--------HHHHHHHHHHHHHcCCCcceEEeecCcee------------
Confidence 44778899999999999864 5544433 346999999999998852 444466631
Q ss_pred cccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEc
Q 009269 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (538)
Q Consensus 101 ~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~Q 146 (538)
-+-+.|+.-++...+.|.+-+.+-+.+ |-+.+-+.
T Consensus 204 -------NLASpd~e~rekSv~~~~~eL~rA~~L----Ga~~VV~H 238 (413)
T PTZ00372 204 -------NLANPDKEKREKSYDAFLDDLQRCEQL----GIKLYNFH 238 (413)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEC
Confidence 122345555566555555555555443 44445454
No 210
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=28.91 E-value=2.3e+02 Score=28.37 Aligned_cols=110 Identities=14% Similarity=0.054 Sum_probs=59.9
Q ss_pred HHHHcCCCEEEEcccCCCcCCCCCceeec-chhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCCceec
Q 009269 32 RAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLR 110 (538)
Q Consensus 32 k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R 110 (538)
++-...|+.|-.- +-.. ...|...+. ...++..+++.|++.|++|++..| .|..+.+-. +
T Consensus 17 ~~~~~~lThv~~~-f~~i--~~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~~~~-~---------- 77 (253)
T cd06545 17 TIDFSKLTHINLA-FANP--DANGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPEFTA-A---------- 77 (253)
T ss_pred cCChhhCCeEEEE-EEEE--CCCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCcchh-h----------
Confidence 3334456555442 2121 235666664 335789999999999999999954 122221100 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHHH---HHHHHHHHH
Q 009269 111 SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYL---HHLVTLARA 170 (538)
Q Consensus 111 ~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y~---~~L~~~~~~ 170 (538)
..++. ..+++.+.|+..++.+.+ =++.|+=|+.... ...|. +.|++.+++
T Consensus 78 ~~~~~---~r~~fi~~lv~~~~~~~~------DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 78 LNDPA---KRKALVDKIINYVVSYNL------DGIDVDLEGPDVT-FGDYLVFIRALYAALKK 130 (253)
T ss_pred hcCHH---HHHHHHHHHHHHHHHhCC------CceeEEeeccCcc-HhHHHHHHHHHHHHHhh
Confidence 12333 335677778877776532 2367777765321 23444 444444443
No 211
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=28.81 E-value=1.3e+02 Score=28.89 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=33.5
Q ss_pred HHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 29 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.++++.++|.+.|.+..... ..++.++++.|+++|+.+++-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 67899999999999865431 135799999999999999886
No 212
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=28.62 E-value=8.3e+02 Score=26.95 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=58.7
Q ss_pred ecCEeeEEEEEeecCCCCC---HhhHHHHHHHHHHcCCCE--E--EEcccCCCcCCCCCceeecchhhHHHHHHHHHHcC
Q 009269 4 KDGEPFRIIGGDLHYFRIL---PQHWEDRLLRAKALGLNT--I--QTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (538)
Q Consensus 4 ~dG~p~~i~sG~~Hy~r~p---~~~W~~~l~k~ka~G~Nt--V--~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~G 76 (538)
+.+..|+|+.+.-+-++.+ ++.-+.--+.+++.|++. | .....-|+-.|.+..+.++- .-+.+-|+.|.+.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv-~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSY-DAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHH-HHHHHHHHHHHHcC
Confidence 4567899999988877644 566677777888888852 3 23233788888888887762 23788899999999
Q ss_pred Ce-EEeecCC
Q 009269 77 LL-VMLRPGP 85 (538)
Q Consensus 77 L~-VilrpGP 85 (538)
.. |++-||-
T Consensus 232 a~~VV~HPGs 241 (413)
T PTZ00372 232 IKLYNFHPGS 241 (413)
T ss_pred CCEEEECCCc
Confidence 96 6667764
No 213
>PLN02284 glutamine synthetase
Probab=28.39 E-value=1.9e+02 Score=30.95 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=43.3
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecch-h------h----HHHHHH-HHHHcCCeEEeecCCceeeecCCCCC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI-A------D----LVSFLK-LCQKLDLLVMLRPGPYICAEWDLGGF 96 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~-~------D----l~~fl~-la~~~GL~VilrpGPyi~aEw~~GG~ 96 (538)
.+.+.++|++.-.+ .||-.||||.+.-. . | +...++ +|+++|+.+-+-|=|+ .++|..-|.
T Consensus 176 ~~~l~~~Gi~ve~~-----h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~-~~~~~GSGm 248 (354)
T PLN02284 176 YKACLYAGINISGI-----NGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPI-PGDWNGAGA 248 (354)
T ss_pred HHHHHHCCCCeEEE-----EcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCC-CCCCccCcc
Confidence 34449999998888 99999999977531 1 1 233343 7889999999999885 345555453
No 214
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=28.21 E-value=78 Score=32.42 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=45.0
Q ss_pred EEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEe
Q 009269 10 RIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 10 ~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vil 81 (538)
+..+|.|.|.-..-+...++++.+|++|.+.|-..+- ...|..|.+- +.++++.| .++.|.+
T Consensus 59 RPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L-----~~dg~vD~~~---~~~Li~~a--~~~~vTF 120 (248)
T PRK11572 59 RPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVL-----DVDGHVDMPR---MRKIMAAA--GPLAVTF 120 (248)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeE-----CCCCCcCHHH---HHHHHHHh--cCCceEE
Confidence 4567889998877888999999999999998877543 2355566555 66677766 3555554
No 215
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.00 E-value=3.2e+02 Score=27.87 Aligned_cols=109 Identities=18% Similarity=0.137 Sum_probs=64.5
Q ss_pred eEEEEEeecCCCCCH----hhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 9 FRIIGGDLHYFRILP----QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 9 ~~i~sG~~Hy~r~p~----~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
.+.+++..|+.+-|. +.=-++|++=.++|.+.+-|-.+ ||.+- +.+|++.|++.|+.+=+.||
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~~---~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDNDD---YYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHHH---HHHHHHHHHHcCCCCCEecc
Confidence 367788887775442 22234566677899999888443 34333 88999999999765444433
Q ss_pred --Cce-------eeecCCCCCcccccccCCCceecCCC-HHHHHHHHHHHHHHHHHhcc
Q 009269 85 --PYI-------CAEWDLGGFPAWLLAKKPALKLRSSD-RAYLQLVERWWGVLLPKIAP 133 (538)
Q Consensus 85 --Pyi-------~aEw~~GG~P~Wl~~~~p~~~~R~~d-~~yl~~~~~~~~~l~~~l~~ 133 (538)
|-. ...|..-.+|.|+.++ +.--.++ ....++--++...++..+..
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~---l~~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR---LEKYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH---HHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 322 2235555789999873 2111233 24444555555555555543
No 216
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=27.92 E-value=2.1e+02 Score=29.01 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcC--CeEEeecCCcee-------eecCCCCCc
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD--LLVMLRPGPYIC-------AEWDLGGFP 97 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~G--L~VilrpGPyi~-------aEw~~GG~P 97 (538)
-++|++=.++|.+.+-|-.+.+. ..+.+|++.|++.| +.||+..-|-.. ++|-.-++|
T Consensus 150 ~~~L~~Ki~aGA~f~iTQ~~fd~-------------~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP 216 (274)
T cd00537 150 IKRLKRKVDAGADFIITQLFFDN-------------DAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIP 216 (274)
T ss_pred HHHHHHHHHCCCCEEeecccccH-------------HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCC
Confidence 34455555679999999555433 23899999999998 456666545322 344444689
Q ss_pred ccccccCCCceecCCCHHHHHHHHHHHHHHHHHhcc
Q 009269 98 AWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (538)
Q Consensus 98 ~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~ 133 (538)
.|+.++... ...+.....+.-.++...++..+.+
T Consensus 217 ~~~~~~l~~--~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 217 DWLLERLEK--LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998873110 1122223344455555555555544
No 217
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=27.80 E-value=1.5e+02 Score=33.39 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=46.4
Q ss_pred cCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 17 HYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 17 Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
-|...|.+.-+..+++..+.|+..++++.+.|.. .++...++.+++.|..+...
T Consensus 90 Gy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~vk~ag~~~~~~ 143 (499)
T PRK12330 90 GYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAVKKVGKHAQGT 143 (499)
T ss_pred CccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHHHHhCCeEEEE
Confidence 3666788888999999999999999998887766 67999999999999987554
No 218
>PLN02231 alanine transaminase
Probab=27.69 E-value=2e+02 Score=32.48 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=43.3
Q ss_pred CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 20 r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.+..+..++.++..+..|+++--+++. |-|.|.=-+++=+- +.+++++|+++|++||..
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e~---l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEEN---QRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHHH---HHHHHHHHHHcCCEEEEE
Confidence 455666666666666666666555665 77888866666444 899999999999999887
No 219
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=27.64 E-value=1.5e+02 Score=34.00 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=44.9
Q ss_pred cCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 17 HYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 17 Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
-|-..|.+.-+..++++.++|+..|++..+.|.. +++...++.|+++|+.|..-
T Consensus 84 G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 84 GYRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCEEEEE
Confidence 3444567778889999999999999999887763 57999999999999987765
No 220
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=27.25 E-value=3.6e+02 Score=28.58 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=64.7
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEE-------cccCCCcCCCCCceeecchhh-HHHHHHHHHHcCCeEEeecCCceeeecC
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQT-------YVPWNLHEPKPGKLVFSGIAD-LVSFLKLCQKLDLLVMLRPGPYICAEWD 92 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~-------yv~Wn~hEp~~G~fdF~g~~D-l~~fl~la~~~GL~VilrpGPyi~aEw~ 92 (538)
..++.| ++.+|++|+.-|-. +-.|...-..-.+-+-...+| +.+|.+.|+++||++-+=-.| ++|.
T Consensus 91 fD~dqW---~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~ 164 (346)
T PF01120_consen 91 FDADQW---AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWH 164 (346)
T ss_dssp --HHHH---HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCC
T ss_pred CCHHHH---HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhc
Confidence 344455 56889999987654 444766544333333223445 568999999999988874222 2444
Q ss_pred CCCCcccccccCCCceecCCCHHHHHHHH-HHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHHHHHHHHHHHHh
Q 009269 93 LGGFPAWLLAKKPALKLRSSDRAYLQLVE-RWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAH 171 (538)
Q Consensus 93 ~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~-~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y~~~L~~~~~~~ 171 (538)
....+.-.....+. .....+.+-+.++ .++.+|-+.+.++. -.+|=+-..... ..+.--...+.+++++
T Consensus 165 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~----~d~lWfDg~~~~---~~~~~~~~~~~~~i~~- 234 (346)
T PF01120_consen 165 HPDYPPDEEGDENG--PADGPGNWQRYYNEYWLAQLRELLTRYK----PDILWFDGGWPD---PDEDWDSAELYNWIRK- 234 (346)
T ss_dssp CTTTTSSCHCHHCC----HCCHHHHHHHHHHHHHHHHHHHHCST----ESEEEEESTTSC---CCTHHHHHHHHHHHHH-
T ss_pred CcccCCCccCCccc--ccccchhhHhHhhhhhHHHHHHHHhCCC----cceEEecCCCCc---cccccCHHHHHHHHHH-
Confidence 33322221110000 1122344444555 44444444444431 122222222111 1222334777788888
Q ss_pred cCCceEEE
Q 009269 172 LGKDIILY 179 (538)
Q Consensus 172 ~G~~v~l~ 179 (538)
..-++++.
T Consensus 235 ~qp~~ii~ 242 (346)
T PF01120_consen 235 LQPDVIIN 242 (346)
T ss_dssp HSTTSEEE
T ss_pred hCCeEEEe
Confidence 44455554
No 221
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=27.18 E-value=66 Score=37.61 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEEc-c--------cCCCcCCC----CCceee----cchhhHHHHHHHHHHcCCeEEeec
Q 009269 27 EDRLLRAKALGLNTIQTY-V--------PWNLHEPK----PGKLVF----SGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~y-v--------~Wn~hEp~----~G~fdF----~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
+++|..+|.+|+|+|+.= | .|.++--. -+.|-- .-.+++..+++.|+..||.|||..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 455999999999999972 2 24433210 011100 013489999999999999999983
No 222
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=27.17 E-value=80 Score=33.92 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 29 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.++.+-++|..+|.+.|+|. +.+...-..|+.+..+.|++.||-||+.
T Consensus 151 sVedAlrLGAdAV~~tvy~G------s~~E~~ml~~l~~i~~ea~~~GlPlv~~ 198 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFG------SEESRRQIEEISEAFEEAHELGLATVLW 198 (348)
T ss_pred cHHHHHHCCCCEEEEEEecC------CHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 36678889999999999998 2233455668999999999999998885
No 223
>PRK10426 alpha-glucosidase; Provisional
Probab=27.11 E-value=1.5e+02 Score=34.40 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=48.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEccc-CCCcCCC----CCceeecch----hhHHHHHHHHHHcCCeEEeecCCceee
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVP-WNLHEPK----PGKLVFSGI----ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~-Wn~hEp~----~G~fdF~g~----~Dl~~fl~la~~~GL~VilrpGPyi~a 89 (538)
.+...+.++++|+.||.+=.+++- |...... ...+||+.+ -|.+++++..++.|++|++-.=|+++.
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~ 295 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS 295 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC
Confidence 456788999999999877666553 6432221 122355443 388999999999999999998888864
No 224
>PLN03036 glutamine synthetase; Provisional
Probab=27.10 E-value=2.1e+02 Score=31.64 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch-------hhH----HHH-HHHHHHcCCeEEeecCCceeeec
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI-------ADL----VSF-LKLCQKLDLLVMLRPGPYICAEW 91 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~-------~Dl----~~f-l~la~~~GL~VilrpGPyi~aEw 91 (538)
+.-++..+.+.++|++.-.+ .||-.||||.|.-. .|= ..+ =++|+++|+.+-+-|=|+ .++|
T Consensus 230 ~i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~-~gd~ 303 (432)
T PLN03036 230 DISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPI-EGDW 303 (432)
T ss_pred HHHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcC-CCCc
Confidence 33455666889999998888 89999999988732 111 222 246889999999999884 4567
Q ss_pred CCCCC
Q 009269 92 DLGGF 96 (538)
Q Consensus 92 ~~GG~ 96 (538)
..-|.
T Consensus 304 ~GSGm 308 (432)
T PLN03036 304 NGAGC 308 (432)
T ss_pred CCCCc
Confidence 76665
No 225
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=26.97 E-value=72 Score=34.77 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=50.5
Q ss_pred CCCHhhHHHHHHHHHHc-CCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 20 RILPQHWEDRLLRAKAL-GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 20 r~p~~~W~~~l~k~ka~-G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
-+|...|+-+|..+.++ -=|||.+-| =|=+.|-=++|.-.= |.+++++|+++|+-||..
T Consensus 179 lLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~H---L~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 179 LLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSEDH---LKKIAETAKKLGIMVIAD 238 (447)
T ss_pred ccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHHH---HHHHHHHHHHhCCeEEeh
Confidence 47889999999999887 779998855 477888888888666 999999999999999876
No 226
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.96 E-value=1e+02 Score=31.30 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=33.0
Q ss_pred eecCEeeEEEEEeecCCC-CCHhhHHHHHHHHHHcCCCEEEE
Q 009269 3 RKDGEPFRIIGGDLHYFR-ILPQHWEDRLLRAKALGLNTIQT 43 (538)
Q Consensus 3 ~~dG~p~~i~sG~~Hy~r-~p~~~W~~~l~k~ka~G~NtV~~ 43 (538)
.+.|+++..+.|.+|+.- ....+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 478999999999999643 34666688899999999987644
No 227
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=26.60 E-value=2.2e+02 Score=28.25 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=62.7
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeec-chhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccc
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (538)
.+..++..++.++++|+..+-+|..... ....|..+ |..|=..-+.+|+++|+ -+|-.| ++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~gs~I-----------Yf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPGTII-----------YF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCCCEE-----------EE
Confidence 5788999999999999999999988766 22333333 67899999999999998 233333 33
Q ss_pred cccCCCceecCCCHHHHHHHHHHHHHHHHHhcc
Q 009269 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (538)
Q Consensus 101 ~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~ 133 (538)
.-+ .+ ..+..+...+..||+.+...|..
T Consensus 112 avD-~d----~~~~~~~~~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 112 AVD-FD----ALDDEVTEVILPYFRGWNDALHE 139 (212)
T ss_pred Eee-cC----CCcchhHHHHHHHHHHHHHHHHh
Confidence 221 11 12333677888888888888864
No 228
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=26.48 E-value=50 Score=34.12 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=47.0
Q ss_pred CCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 19 ~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.|+|.-.=.=.-+.+|+.|-++|.+-|.|..-|++-.+-.-.. +++|...|..+||..+|.|
T Consensus 106 ~rlp~l~~~isa~riK~~G~~avK~Lvy~~~D~~e~neqk~a~---ierigsec~aedi~f~lE~ 167 (306)
T COG3684 106 VRLPDLLRKISAKRIKEDGGDAVKFLVYYRSDEDEINEQKLAY---IERIGSECHAEDLPFFLEP 167 (306)
T ss_pred ccchhhhhhhCHHHHHHhcccceEEEEEEcCCchHHhHHHHHH---HHHHHHHhhhcCCceeEee
Confidence 3555222222457899999999999999999999433333334 8999999999999999885
No 229
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=26.26 E-value=1.2e+02 Score=31.39 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=50.1
Q ss_pred EeeE-EEEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEcccCCCc-CC--------CCCceeecchhhHHHHHHHHHHc
Q 009269 7 EPFR-IIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLH-EP--------KPGKLVFSGIADLVSFLKLCQKL 75 (538)
Q Consensus 7 ~p~~-i~sG~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~h-Ep--------~~G~fdF~g~~Dl~~fl~la~~~ 75 (538)
+++. +..|.-+.. |||.+.|.+.++.+++.|+..| +.+.-- |. ....-+..|..+|.+++.+.+..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~iv---l~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIK---LPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEE---EeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhC
Confidence 3443 345555544 6999999999999988887654 323211 11 01124566777888888888888
Q ss_pred CCeEEeecCC
Q 009269 76 DLLVMLRPGP 85 (538)
Q Consensus 76 GL~VilrpGP 85 (538)
.+.|-...||
T Consensus 255 ~l~I~nDSGp 264 (322)
T PRK10964 255 KAVVSVDTGL 264 (322)
T ss_pred CEEEecCCcH
Confidence 8877777666
No 230
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=26.08 E-value=1.5e+02 Score=34.05 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=45.4
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+.|...|.+.-+..++++.++|+..|+++.+-|.. .++...++.|+++|+.|...
T Consensus 88 ~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 142 (592)
T PRK09282 88 VGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAAKKAGAHVQGT 142 (592)
T ss_pred cccccccchhhHHHHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHHHHcCCEEEEE
Confidence 34555677778889999999999999998887664 47999999999999988755
No 231
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=25.65 E-value=2.1e+02 Score=27.78 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=41.7
Q ss_pred EEEEEeecCCCCCHhhHHHHHHHHH-HcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 10 RIIGGDLHYFRILPQHWEDRLLRAK-ALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 10 ~i~sG~~Hy~r~p~~~W~~~l~k~k-a~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
++..+.+.+.. ++.+.+.+++.. +.|+-.|..+-... .++.......+.++++|+++|+-|++-+|
T Consensus 72 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 72 FIGFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDLG-------GFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp EEEEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSET-------TCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred EEEEEEecCCC--chhHHHHHHHhccccceeeeEecCCCC-------ccccccHHHHHHHHHHHHhhccceeeecc
Confidence 33444455433 556666666655 99999999865332 22222222226999999999999999976
No 232
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=25.51 E-value=1.9e+02 Score=29.27 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=44.2
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecch-------hh----HHHHH-HHHHHcCCeEEeecCCcee
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI-------AD----LVSFL-KLCQKLDLLVMLRPGPYIC 88 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~-------~D----l~~fl-~la~~~GL~VilrpGPyi~ 88 (538)
.+..++.++.+.++|++.-.+ .||-.||||...-. .| +...+ ++|+++||.+.+-|=|+..
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~ 140 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSG 140 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTT
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCC
Confidence 677899999999999998888 89999999976531 11 12222 4678999999999988654
No 233
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.30 E-value=28 Score=33.94 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=42.2
Q ss_pred EEEEeecCCCCC---HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCC--ceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 11 IIGGDLHYFRIL---PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 11 i~sG~~Hy~r~p---~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G--~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.-+|--.|.|+- |-..+ +-+.++|++.+-.- .--..| -|||-..-+|.+|.++|+++||.+-|-
T Consensus 118 VAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvD-----TaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 118 VAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVD-----TAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EeccccchhhccCcCccccH---HHHHhcCCCEEEEe-----cccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 344555555642 33333 24567888876552 222344 588888889999999999999987665
No 234
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.28 E-value=1.5e+02 Score=30.44 Aligned_cols=49 Identities=16% Similarity=0.025 Sum_probs=35.7
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..+++++|++.|-+ -|..++-.|+= .+..+.+=++.|.++||.+||+.|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~~~E-~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI-----GHSERRLYFGE-TDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE-----Ccccccccccc-chHHHHHHHHHHHHCCCeEEEEcC
Confidence 45889999999888 55544444432 223467888999999999999944
No 235
>PRK06852 aldolase; Validated
Probab=25.24 E-value=1.6e+02 Score=31.07 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=50.9
Q ss_pred HHHHHHcC------CCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCccccccc
Q 009269 30 LLRAKALG------LNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAK 103 (538)
Q Consensus 30 l~k~ka~G------~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~ 103 (538)
++.+-++| ..+|.+.|+|. +.+..+-..|+.+..+.|++.||-+|+.. |- -|
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~G------s~~E~~ml~~l~~v~~ea~~~GlPll~~~--yp-----rG--------- 178 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLG------SEYESEMLSEAAQIIYEAHKHGLIAVLWI--YP-----RG--------- 178 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecC------CHHHHHHHHHHHHHHHHHHHhCCcEEEEe--ec-----cC---------
Confidence 44455666 77999999998 33335566789999999999999988742 11 01
Q ss_pred CCCceecCCCHHHHHHHHHHHHHHHHHh
Q 009269 104 KPALKLRSSDRAYLQLVERWWGVLLPKI 131 (538)
Q Consensus 104 ~p~~~~R~~d~~yl~~~~~~~~~l~~~l 131 (538)
+.+ -...+|.++..+.|--..|...|
T Consensus 179 -~~i-~~~~~~~~ia~aaRiaaELGADI 204 (304)
T PRK06852 179 -KAV-KDEKDPHLIAGAAGVAACLGADF 204 (304)
T ss_pred -ccc-CCCccHHHHHHHHHHHHHHcCCE
Confidence 112 23457778877777544444333
No 236
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=25.08 E-value=3.4e+02 Score=27.64 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=45.5
Q ss_pred EeeEEEEEeecCCCCC-------------HhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHH
Q 009269 7 EPFRIIGGDLHYFRIL-------------PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQ 73 (538)
Q Consensus 7 ~p~~i~sG~~Hy~r~p-------------~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~ 73 (538)
-++.++..++-|.+.. .++.++.+++++++|.|.|=+ -|+.+ +..++++.
T Consensus 87 ~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~--~k~I~---------------~~a~~~l~ 149 (261)
T cd03334 87 PRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV--EKSVS---------------RIAQDLLL 149 (261)
T ss_pred CcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE--CCccC---------------HHHHHHHH
Confidence 4678888999888744 566788899999999998865 23332 55678888
Q ss_pred HcCCeEEeec
Q 009269 74 KLDLLVMLRP 83 (538)
Q Consensus 74 ~~GL~Vilrp 83 (538)
++|+.++-|+
T Consensus 150 k~gI~~v~~v 159 (261)
T cd03334 150 EAGITLVLNV 159 (261)
T ss_pred HCCCEEEEec
Confidence 9999988773
No 237
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=24.96 E-value=1.6e+02 Score=31.43 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=43.5
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCC--eEEeecCCceeeecCC
Q 009269 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDL--LVMLRPGPYICAEWDL 93 (538)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL--~VilrpGPyi~aEw~~ 93 (538)
+....|+.--.-.+++||.+|.+|-+|+.-+.. .|++.||.-.+..-- -+||. .||-=+.
T Consensus 130 ~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh----aCAhNPT 191 (410)
T KOG1412|consen 130 VSNPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH----ACAHNPT 191 (410)
T ss_pred ecCCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee----ccccCCC
Confidence 445679999999999999999999999986643 456777776666444 34444 6875333
No 238
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=24.93 E-value=2e+02 Score=31.50 Aligned_cols=92 Identities=22% Similarity=0.413 Sum_probs=55.7
Q ss_pred cCCCCCceeecch-------------hhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCCceecCCCHHH
Q 009269 50 HEPKPGKLVFSGI-------------ADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAY 116 (538)
Q Consensus 50 hEp~~G~fdF~g~-------------~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~y 116 (538)
.||. |+|.|+|- +++..+=+.|++.||-.+- .|+-|.|.....|-| ..+.|
T Consensus 93 lEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvG-----------lG~~Pkw~r~e~p~m----pk~RY 156 (456)
T COG3572 93 LEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVG-----------LGGSPKWTRAEVPVM----PKSRY 156 (456)
T ss_pred eccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEe-----------ecCCCccccCcCCCC----CchHH
Confidence 4677 89999972 4677777777788885443 378999999865543 23444
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHHHHHHH
Q 009269 117 LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLV 165 (538)
Q Consensus 117 l~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y~~~L~ 165 (538)
+.+.+|+.++...=....+ -+..+||.=.++ +..+|.+.++
T Consensus 157 -~iM~~Ympkvg~~glDMm~----rtctiQVNLD~s---se~dm~rk~r 197 (456)
T COG3572 157 -AIMTRYMPKVGVKGLDMMT----RTCTIQVNLDFS---SETDMRRKMR 197 (456)
T ss_pred -HHHHHHHhhcCCcchhhhh----hhheeEEeeccC---cchhHHHHHH
Confidence 4566666552111112211 267788876665 3455555543
No 239
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=24.57 E-value=1.3e+02 Score=25.10 Aligned_cols=67 Identities=18% Similarity=0.058 Sum_probs=37.9
Q ss_pred ccEEEEEeeeCCCCCCcccccCCccceEEEEeCCCcCCCCCCCeeEEEEEeecccceeecccCCCCCcEEEEEEEecCcc
Q 009269 384 FGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSNRALSLPNFRCGSNISLFVLVENMGRV 463 (538)
Q Consensus 384 ~GyvlY~t~i~~~~~~~~L~~~~v~Dra~Vfvdg~~~~~~~~~~~vg~l~r~~~~~~~l~~~~~~~~~~L~ILVEN~GRv 463 (538)
.|-+++...=........|+..+-++..+-|||| +++|.... ..++.++.. ..+.++|.+ |...||.
T Consensus 18 ~g~~~~~~~~~~~~~~l~l~a~~~~~~~~W~vdg---------~~~g~~~~--~~~~~~~~~-~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 18 DGAVLALDPGIPERQPLVLKAAGGRGPVYWFVDG---------EPLGTTQP--GHQLFWQPD-RPGEHTLTV-VDAQGRS 84 (89)
T ss_pred CCCEEEeCCCCCccceEEEEEeCCCCcEEEEECC---------EEcccCCC--CCeEEeCCC-CCeeEEEEE-EcCCCCE
Confidence 4666655431112233344444446788999999 77776644 234444431 125677777 7777774
No 240
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.56 E-value=1.6e+02 Score=29.47 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCEEEEc-ccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 28 DRLLRAKALGLNTIQTY-VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 28 ~~l~k~ka~G~NtV~~y-v~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
+-+++++++|.+.|.+. .+.... .++.++++.|+++||.+++-.
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~~------------~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDYP------------DDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcH------------HHHHHHHHHHHHcCCCEEEEE
Confidence 34678899999999983 111111 147899999999999988873
No 241
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=24.21 E-value=52 Score=33.42 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=36.0
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..++|++|++.|-+ -|..++-.|. +.+.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 45899999999888 4544433333 4456799999999999999999943
No 242
>PLN02389 biotin synthase
Probab=24.12 E-value=1e+02 Score=33.42 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEccc--CCCcCCCCCceeecchhhHHHHHHHHHHcCCeE
Q 009269 27 EDRLLRAKALGLNTIQTYVP--WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~--Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~V 79 (538)
++.++++|++|++.+..-+- -+.+...-..-+|+. .-+.++.|++.|+.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~---rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDD---RLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHH---HHHHHHHHHHcCCeE
No 243
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=24.05 E-value=1.3e+02 Score=32.02 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 28 ~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
++++++.+.|+..|++.+.++..+ .+...++.|+++|+.|.+-
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~------------~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEAD------------VSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHH------------HHHHHHHHHHHCCCeEEEE
Confidence 568889999999999887655432 4799999999999998776
No 244
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.92 E-value=1.2e+02 Score=31.13 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.++++.+.+.|+..|++.+..+ ++ .++...++.|+++|+.|.+-
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~---~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EF---DEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cH---HHHHHHHHHHHHCCCeEEEE
Confidence 3567778889999999987654 22 34788999999999988766
No 245
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.81 E-value=63 Score=34.32 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCEEE-----EcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEE
Q 009269 27 EDRLLRAKALGLNTIQ-----TYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~-----~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vi 80 (538)
++.|+++|++|++.+- ++..--++.-.|+....+ +.-+.++.|++.|+.+-
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCcc
Confidence 5668899999987554 222111222334433332 35689999999999753
No 246
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=23.48 E-value=1.7e+02 Score=30.18 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=48.8
Q ss_pred CEeeEEEE-Ee-e-cCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCc------CCC-CCceeecchhhHHHHHHHHHHc
Q 009269 6 GEPFRIIG-GD-L-HYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLH------EPK-PGKLVFSGIADLVSFLKLCQKL 75 (538)
Q Consensus 6 G~p~~i~s-G~-~-Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~h------Ep~-~G~fdF~g~~Dl~~fl~la~~~ 75 (538)
++|++.+. |+ . .+=|||.+.|.+.++.+.+.|+..|=+.-+=+.. +.. +...|..|..+|..+..+.+..
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 45665554 34 3 3447999999999999988887766554331110 001 1234566666677777776666
Q ss_pred CCeEEeecCC
Q 009269 76 DLLVMLRPGP 85 (538)
Q Consensus 76 GL~VilrpGP 85 (538)
.|.|-..-||
T Consensus 253 ~l~I~~DSGp 262 (334)
T TIGR02195 253 KAVVTNDSGL 262 (334)
T ss_pred CEEEeeCCHH
Confidence 6666555444
No 247
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=23.48 E-value=69 Score=33.83 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcC------CCCCceeecchhhHHHHHHHHHHcCCeE
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHE------PKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hE------p~~G~fdF~g~~Dl~~fl~la~~~GL~V 79 (538)
++.|++||++|++.+-. .-..... -.|+...++ +..+.++.|++.||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998740 0111111 123333332 3578999999999965
No 248
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=22.97 E-value=2e+02 Score=28.55 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=44.2
Q ss_pred CCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceee---cc--hhhHHHHHHHHHHcCCeEEeecCCceeeecC
Q 009269 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVF---SG--IADLVSFLKLCQKLDLLVMLRPGPYICAEWD 92 (538)
Q Consensus 18 y~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF---~g--~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~ 92 (538)
..|+..+|--+.-+.+|+-||.++-.--.=..|-.. .|-+ -| .+|+.++ +..=++|+||||..|- ..
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sS--rFlY~k~KGEvE~~v~eL-----~F~~~~i~RPG~ll~~-R~ 174 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSS--RFLYMKMKGEVERDVIEL-----DFKHIIILRPGPLLGE-RT 174 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCccc--ceeeeeccchhhhhhhhc-----cccEEEEecCcceecc-cc
Confidence 348899999999999999999876553222222211 1211 12 1233222 3444799999997763 33
Q ss_pred CCCCcccccc
Q 009269 93 LGGFPAWLLA 102 (538)
Q Consensus 93 ~GG~P~Wl~~ 102 (538)
.--.-.||-+
T Consensus 175 esr~geflg~ 184 (238)
T KOG4039|consen 175 ESRQGEFLGN 184 (238)
T ss_pred cccccchhhh
Confidence 3323345544
No 249
>PRK14565 triosephosphate isomerase; Provisional
Probab=22.74 E-value=1.9e+02 Score=29.35 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=33.6
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..++|++|++.|-+ -|..++-.|+=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45889999998888 555444444322 22233444899999999999965
No 250
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=22.69 E-value=1.4e+02 Score=29.53 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=46.0
Q ss_pred EeecCC-CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 14 GDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 14 G~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+...+| +.+.+.....++.+.++|.+.|.+.+.+.... . -.-..++.++.++|++.|+.+|+.
T Consensus 65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~-----~-~~~~~~i~~v~~~~~~~g~~~iie 128 (235)
T cd00958 65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEE-----E-REMLEELARVAAEAHKYGLPLIAW 128 (235)
T ss_pred CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCch-----H-HHHHHHHHHHHHHHHHcCCCEEEE
Confidence 344454 77778888889999999999997766654221 0 112346899999999999999985
No 251
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=22.63 E-value=2.3e+02 Score=26.97 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee-cCCc
Q 009269 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPY 86 (538)
Q Consensus 29 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr-pGPy 86 (538)
.++.++++|.+.|.+. .|+ ....+.++++.|+++|+.+++- ++|.
T Consensus 69 ~~~~~~~aGad~i~~h-----~~~--------~~~~~~~~i~~~~~~g~~~~v~~~~~~ 114 (202)
T cd04726 69 EAEMAFKAGADIVTVL-----GAA--------PLSTIKKAVKAAKKYGKEVQVDLIGVE 114 (202)
T ss_pred HHHHHHhcCCCEEEEE-----eeC--------CHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 4578899999999983 222 1124789999999999998874 6653
No 252
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.58 E-value=1.5e+02 Score=31.46 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.++|+++.++|+..|++.++.+..+ .+...++.|++.|+.|..-
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d------------~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEAD------------VSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHH------------HHHHHHHHHHHcCCeEEEE
Confidence 3568899999999999987654332 3789999999999988765
No 253
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=22.15 E-value=1.8e+02 Score=26.13 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEcccC-------------------CCcCCCCCce-eecchhhHHHHHHHHHHcCCeEEee
Q 009269 24 QHWEDRLLRAKALGLNTIQTYVPW-------------------NLHEPKPGKL-VFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~W-------------------n~hEp~~G~f-dF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+....-++.++..|+.++.....- .... ..+.+ =.||+.|+...++.++++|..|++-
T Consensus 52 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~-~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 52 ERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKR-RIDTIVLVSGDSDFVPLVERLRELGKRVIVV 129 (149)
T ss_pred hhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhc-CCCEEEEEECCccHHHHHHHHHHcCCEEEEE
Confidence 445566678889999999887542 1111 22232 3588999999999999999999887
No 254
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.13 E-value=68 Score=30.59 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=46.4
Q ss_pred EEeecCCCC---CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeec-chhhHHHHHHHHHHc-CCeEEeecCCce
Q 009269 13 GGDLHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKL-DLLVMLRPGPYI 87 (538)
Q Consensus 13 sG~~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~Dl~~fl~la~~~-GL~VilrpGPyi 87 (538)
-|.+||++- +.++-+.-++.++..+.+. .+|-..|...+. .-+ ....+.+|++.++++ |-+++|=.++..
T Consensus 54 ~G~Yhy~~~~~~a~~qA~~f~~~~~~~~~~~----~~~lD~E~~~~~-~~~~~~~~~~~f~~~v~~~~G~~~~iY~~~~~ 128 (184)
T cd06525 54 VGFYHFLVGTSNPEEQAENFYNTIKGKKMDL----KPALDVEVNFGL-SKDELNDYVLRFIEEFEKLSGLKVGIYTYTSF 128 (184)
T ss_pred eEEEEEeeCCCCHHHHHHHHHHhccccCCCC----CeEEEEecCCCC-CHHHHHHHHHHHHHHHHHHHCCCeEEEecHHH
Confidence 466676653 2444555555555554331 123333332221 000 123578999999988 999888777754
Q ss_pred eeec---CCCCCcccccc
Q 009269 88 CAEW---DLGGFPAWLLA 102 (538)
Q Consensus 88 ~aEw---~~GG~P~Wl~~ 102 (538)
.... .....|.||.+
T Consensus 129 ~~~~~~~~~~~~~lWiA~ 146 (184)
T cd06525 129 INNNLDSRLSSYPLWIAN 146 (184)
T ss_pred HHHhccccccCCCeEEEe
Confidence 3221 12356778886
No 255
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=22.02 E-value=4e+02 Score=24.92 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=62.0
Q ss_pred eeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCce
Q 009269 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYI 87 (538)
Q Consensus 8 p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi 87 (538)
..++++...|....+|+.|.+-+.+++...++...+.++= ........-.|.. =+..+-+++++.|..+|-. +-
T Consensus 46 d~ii~gspty~~g~~p~~~~~fl~~l~~~~l~gk~v~~fg-~g~~~~y~~~f~~--a~~~l~~~l~~~G~~~ig~---~~ 119 (167)
T TIGR01752 46 DKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKTVALFG-LGDQEGYSETFCD--GMGILYDKIKARGAKVVGF---WP 119 (167)
T ss_pred CEEEEEecCCCCCcCcHHHHHHHHHhhcCCCCCCEEEEEe-cCCCCcccHHHHH--HHHHHHHHHHHcCCeEEce---ec
Confidence 4567777777666667899999998887776655554431 1110000001211 1456667778889886554 33
Q ss_pred eeecCCCCCccccccc--CCCcee-cCCCHHH-HHHHHHHHHHHHHHh
Q 009269 88 CAEWDLGGFPAWLLAK--KPALKL-RSSDRAY-LQLVERWWGVLLPKI 131 (538)
Q Consensus 88 ~aEw~~GG~P~Wl~~~--~p~~~~-R~~d~~y-l~~~~~~~~~l~~~l 131 (538)
|-.+.+-+.++ +... .-++.+ ..+.+.. -++.++|.++|.+.+
T Consensus 120 ~~gy~~~~~~~-~~~~~~f~gl~~~~~~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 120 TDGYHFEASKA-VRDGDKFVGLALDEDNQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CCCcccccchh-eeCCCEEEEEEecCCCchhhhHHHHHHHHHHHHHhh
Confidence 43333333333 1110 000111 1233333 378889988887654
No 256
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=22.02 E-value=2.4e+02 Score=29.67 Aligned_cols=113 Identities=19% Similarity=0.366 Sum_probs=59.9
Q ss_pred EEEEcccCCCcCCC-CCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccccCCCceecCCCHHHHH
Q 009269 40 TIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQ 118 (538)
Q Consensus 40 tV~~yv~Wn~hEp~-~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~ 118 (538)
.|.++|.|+.|=-. | =...++.|+++|.+|+=- .|. ||+.| ..|+.+ +.-++.+-.|
T Consensus 28 yiD~fvywsh~~i~iP----------~~~widaAHrnGV~vLGT---iif-e~~~~--~~~~~~----ll~~~~~g~~-- 85 (311)
T PF03644_consen 28 YIDIFVYWSHGLITIP----------PAGWIDAAHRNGVKVLGT---IIF-EWGGG--AEWCEE----LLEKDEDGSF-- 85 (311)
T ss_dssp G-SEEEET-TBSSE-------------HHHHHHHHHTT--EEEE---EEE-EEE----HHHHHH----HT---TTS----
T ss_pred ceeeEeecccccccCC----------CchhHHHHHhcCceEEEE---EEe-cCCch--HHHHHH----HHcCCccccc--
Confidence 56788889854322 2 156899999999999643 344 77654 466554 2222333332
Q ss_pred HHHHHHHHHHHHhccccccCCCCEEEEccccccCC-CC--CcHHHHHHHHHHHHHhcCCceEEEEe
Q 009269 119 LVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS-YG--DDKEYLHHLVTLARAHLGKDIILYTT 181 (538)
Q Consensus 119 ~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~-~~--~~~~y~~~L~~~~~~~~G~~v~l~t~ 181 (538)
++.++|+.+.+-+-. .| ..+-+|+..+. .. .-.++++.|++.+++.-+..|..|.+
T Consensus 86 ---~~A~kLi~ia~~yGF--DG--w~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~~~~~~v~WYDs 144 (311)
T PF03644_consen 86 ---PYADKLIEIAKYYGF--DG--WLINIETPLSGPEDAENLIDFLKYLRKEAHENPGSEVIWYDS 144 (311)
T ss_dssp ---HHHHHHHHHHHHHT----E--EEEEEEESSTTGGGHHHHHHHHHHHHHHHHHT-T-EEEEES-
T ss_pred ---HHHHHHHHHHHHcCC--Cc--eEEEecccCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEeec
Confidence 234456665554322 23 77888998774 21 34578888888887622456777855
No 257
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=21.98 E-value=7.6e+02 Score=24.21 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeec-chhhHHHHHHHHHHcCCeEEeec------CCceeeecCCC-----
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRP------GPYICAEWDLG----- 94 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~Dl~~fl~la~~~GL~Vilrp------GPyi~aEw~~G----- 94 (538)
++.++.|+++|++++.+ -+.-.|+ |..-|.+.++..++.|+..+-.- .||..=|.+..
T Consensus 67 ~~~~~~L~~~G~d~~tl----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~i 136 (239)
T cd07381 67 PEVADALKAAGFDVVSL----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFL 136 (239)
T ss_pred HHHHHHHHHhCCCEEEc----------ccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEE
Q ss_pred CCcccccccCCCceecC--CCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHHHHHHHHHHHHhc
Q 009269 95 GFPAWLLAKKPALKLRS--SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHL 172 (538)
Q Consensus 95 G~P~Wl~~~~p~~~~R~--~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y~~~L~~~~~~~~ 172 (538)
|+-.+.......-.... ....-.+.++++++++-+. +++ -|++.+...||.. ....+.+.+.+.+.+ .
T Consensus 137 g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~------vIv~~H~G~e~~~--~p~~~~~~la~~l~~-~ 206 (239)
T cd07381 137 AYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-ADI------VIVSLHWGVEYSY--YPTPEQRELARALID-A 206 (239)
T ss_pred EEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-CCE------EEEEecCcccCCC--CCCHHHHHHHHHHHH-C
Q ss_pred CCceEE
Q 009269 173 GKDIIL 178 (538)
Q Consensus 173 G~~v~l 178 (538)
|+|+++
T Consensus 207 G~D~Ii 212 (239)
T cd07381 207 GADLVI 212 (239)
T ss_pred CCCEEE
No 258
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.79 E-value=2.4e+02 Score=21.83 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHcCCCEEEEcccCCCcCCC--CC--ceeecchhhHHHHHHHHHHcCCeEE
Q 009269 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PG--KLVFSGIADLVSFLKLCQKLDLLVM 80 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G--~fdF~g~~Dl~~fl~la~~~GL~Vi 80 (538)
+..-.+.++.+.+.|+|..+++.. +++. .. .+..+. .|.+++++..++.|..|+
T Consensus 12 pG~l~~i~~~l~~~~inI~~i~~~---~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 12 PGQLADIAAIFKDRGVNIVSVLVY---PSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEEe---ccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 345667888899999999999753 2222 22 334444 466799999999998664
No 259
>PLN02429 triosephosphate isomerase
Probab=21.65 E-value=2e+02 Score=30.49 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=32.4
Q ss_pred HHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHH----HHHcCCeEEeecC
Q 009269 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKL----CQKLDLLVMLRPG 84 (538)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~l----a~~~GL~VilrpG 84 (538)
..++|++|++.|-+ -|..++-.|. - .++++.. |.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~--E---td~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIG--E---KDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCC--c---CHHHHHHHHHHHHHCcCEEEEEcC
Confidence 45889999998888 5554454443 2 3555555 9999999999965
No 260
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=21.50 E-value=1.4e+02 Score=26.60 Aligned_cols=46 Identities=24% Similarity=0.469 Sum_probs=28.4
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHHHHHHHHH
Q 009269 108 KLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTL 167 (538)
Q Consensus 108 ~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y~~~L~~~ 167 (538)
.+.|++..|-+-.++ +..+.||. =+-||.++|+| | .++|++||.+.
T Consensus 57 iiKT~~~~~~~l~~~-----ikelHpYe---vPeIi~i~v~~--g----~~eYL~Wl~~~ 102 (104)
T COG1324 57 IIKTTSEKFEELIER-----IKELHPYE---VPEIIALPVDN--G----LPEYLEWLNEE 102 (104)
T ss_pred EEEehHHhHHHHHHH-----HHHhCCCC---CceEEEEEecc--C----CHHHHHHHHHh
Confidence 345655544332222 33444554 35799999998 3 47899999764
No 261
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=21.38 E-value=1.2e+02 Score=31.87 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeecCCCCCcccccc
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLA 102 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~ 102 (538)
-..|+.+|++|.+||= |..|- .-.+|...+.+++++-|+.||...|=|.-.. .|.|+..
T Consensus 41 ~~El~~~k~~Gg~tiV--------d~T~~----g~GRd~~~l~~is~~tGv~II~~TG~y~~~~-----~p~~~~~ 99 (308)
T PF02126_consen 41 VAELKEFKAAGGRTIV--------DATPI----GLGRDVEALREISRRTGVNIIASTGFYKEPF-----YPEWVRE 99 (308)
T ss_dssp HHHHHHHHHTTEEEEE--------E--SG----GGTB-HHHHHHHHHHHT-EEEEEEEE-SGGC-----SCHHHHT
T ss_pred HHHHHHHHHcCCCEEE--------ecCCc----ccCcCHHHHHHHHHHhCCeEEEeCCCCcccc-----CChhhhc
Confidence 3478999999988753 33332 2347999999999999999999999887433 5777765
No 262
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=21.37 E-value=3.1e+02 Score=30.13 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=46.5
Q ss_pred CCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 19 ~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
|.+..+..++.++.+++-|.++=-+++. |-|.|.=-.|.=+- +.+++++|+++++.+|..
T Consensus 180 f~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e~---l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 180 FQVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRSV---LEDILDFVVRKNIHLVSD 239 (447)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHHH---HHHHHHHHHHCCCEEEEe
Confidence 4566788888888888888886445654 67888755665444 899999999999999987
No 263
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=20.93 E-value=5e+02 Score=23.03 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=45.4
Q ss_pred cCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeec
Q 009269 5 DGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (538)
Q Consensus 5 dG~p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilrp 83 (538)
.|.-+.+.+|.. ...-.++.+.+-++.+.+.|+-++-+.+-=... .-| +.++++|.+++|-+|.-|
T Consensus 41 ~~gElvlttg~~-~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP-----------~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 41 RGGELVLTTGYA-LRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIP-----------EEIIELADELGLPLIEIP 106 (123)
T ss_pred CCCeEEEECCcc-cCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCC-----------HHHHHHHHHcCCCEEEeC
Confidence 344445544433 223356789999999999999998885431111 222 889999999999999885
No 264
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=20.73 E-value=5.5e+02 Score=26.67 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHHHHHHHHHHH
Q 009269 115 AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLAR 169 (538)
Q Consensus 115 ~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y~~~L~~~~~ 169 (538)
.|.+.+++|.+. |=.||+ ||.+...+|++.|++.++
T Consensus 268 ~~~~~~~~~~~~------------G~~iiG-------GCCGttP~hI~al~~~l~ 303 (304)
T PRK09485 268 SLGELAPEWYAA------------GARLIG-------GCCRTTPEDIAALAAALK 303 (304)
T ss_pred HHHHHHHHHHHc------------CCeEEe-------eCCCCCHHHHHHHHHHhh
Confidence 567777776442 434554 567788999999998764
No 265
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.71 E-value=5.5e+02 Score=25.41 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=73.0
Q ss_pred HhhHHHHHHHHHHcCCCE-EEE--cccCCCcCC---CCCce--eecc-------------hhhHHHHHHHHHHcCCeEEe
Q 009269 23 PQHWEDRLLRAKALGLNT-IQT--YVPWNLHEP---KPGKL--VFSG-------------IADLVSFLKLCQKLDLLVML 81 (538)
Q Consensus 23 ~~~W~~~l~k~ka~G~Nt-V~~--yv~Wn~hEp---~~G~f--dF~g-------------~~Dl~~fl~la~~~GL~Vil 81 (538)
++.-.+.++.+|+.|+.+ |+| |++|...+. .-+.+ |+-. +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 566788999999999974 444 666633332 12222 2221 12344567778888888888
Q ss_pred ecCCceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhccccccCCCCEEEEcccc-----------c
Q 009269 82 RPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN-----------E 150 (538)
Q Consensus 82 rpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVEN-----------E 150 (538)
|. |. .|++ ++++.-++++.+|+..+. +. +|-...-.+ +
T Consensus 133 R~-~v-----------------IPg~---nd~~e~i~~ia~~l~~l~--~~--------~~~llpyh~~g~~Ky~~lg~~ 181 (213)
T PRK10076 133 RL-PL-----------------IPGF---TLSRENMQQALDVLIPLG--IK--------QIHLLPFHQYGEPKYRLLGKT 181 (213)
T ss_pred EE-EE-----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc--------eEEEecCCccchhHHHHcCCc
Confidence 82 11 2443 456777788777776541 11 221111111 2
Q ss_pred cCC--C-CCcHHHHHHHHHHHHHhcCCceEE
Q 009269 151 FGS--Y-GDDKEYLHHLVTLARAHLGKDIIL 178 (538)
Q Consensus 151 yg~--~-~~~~~y~~~L~~~~~~~~G~~v~l 178 (538)
|-. . ..+.+.|+.+++.+++ .|+.+.+
T Consensus 182 y~~~~~~~~~~~~l~~~~~~~~~-~gl~~~i 211 (213)
T PRK10076 182 WSMKEVPAPSSADVATMREMAER-AGFQVTV 211 (213)
T ss_pred CccCCCCCcCHHHHHHHHHHHHH-cCCeEEe
Confidence 221 1 2578899999999998 6887643
No 266
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=20.69 E-value=87 Score=22.96 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=17.8
Q ss_pred ceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 56 KLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 56 ~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.++|||..|-+.++++++...=..++-
T Consensus 11 ~~~fSgHad~~~L~~~i~~~~p~~vil 37 (43)
T PF07521_consen 11 QIDFSGHADREELLEFIEQLNPRKVIL 37 (43)
T ss_dssp ESGCSSS-BHHHHHHHHHHHCSSEEEE
T ss_pred EEeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 578999887777777777654454444
No 267
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=20.67 E-value=63 Score=34.02 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=38.8
Q ss_pred eEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEE
Q 009269 9 FRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (538)
Q Consensus 9 ~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vi 80 (538)
.++++=+..--++ ++.|++.+..+-++|+|.|+- +|+. ..|..+|.++|+++|.+++
T Consensus 35 ~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~---------L~ddpel~~~A~~~g~~i~ 91 (301)
T PF07755_consen 35 TLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDF---------LSDDPELAAAAKKNGVRII 91 (301)
T ss_dssp EEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS----------HCCHHHHHCCHHCCT--EE
T ss_pred EEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhh---------hccCHHHHHHHHHcCCeEe
Confidence 4555555444455 589999999999999999997 7763 2357899999999998754
No 268
>PRK06703 flavodoxin; Provisional
Probab=20.58 E-value=6.1e+02 Score=22.93 Aligned_cols=96 Identities=14% Similarity=-0.057 Sum_probs=54.5
Q ss_pred eeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeec---chhhHHHHHHHHHHcCCeEEeecC
Q 009269 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS---GIADLVSFLKLCQKLDLLVMLRPG 84 (538)
Q Consensus 8 p~~i~sG~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~---g~~Dl~~fl~la~~~GL~VilrpG 84 (538)
..++++-..+-.--+|..+.+-+..+++.-++.....+|- .++++ +..-.+.+-+..++.|..++.+|
T Consensus 50 d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg--------~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~- 120 (151)
T PRK06703 50 DGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFG--------SGDTAYPLFCEAVTIFEERLVERGAELVQEG- 120 (151)
T ss_pred CcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEc--------cCCCChHHHHHHHHHHHHHHHHCCCEEcccC-
Confidence 3455544444333446667777777776666655555552 11221 12235567777788999887763
Q ss_pred CceeeecCCCCCcccccccCCCceecCCCHHHHHHHHHHHHHHHHHhc
Q 009269 85 PYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (538)
Q Consensus 85 Pyi~aEw~~GG~P~Wl~~~~p~~~~R~~d~~yl~~~~~~~~~l~~~l~ 132 (538)
..+ ++ -| ++...++.++.|.++|...++
T Consensus 121 -~~~-~~------------~p------~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 -LKI-EL------------AP------ETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred -eEE-ec------------CC------CchhHHHHHHHHHHHHHHHHH
Confidence 111 10 11 124667888888888876654
No 269
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=20.47 E-value=1.7e+02 Score=33.29 Aligned_cols=63 Identities=17% Similarity=0.101 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcCCCCCce---------eecchhhHHHHHHHHHHcCCeEEeecCCceee
Q 009269 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKL---------VFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~f---------dF~g~~Dl~~fl~la~~~GL~VilrpGPyi~a 89 (538)
.+.|+.+|++|+++|-+-=+=...++.-|-+ .|.-..|+.++|+.+++.||++|+..=|=-|+
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~ 114 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRS 114 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCC
Confidence 6789999999999998854444444433322 24445699999999999999999996554444
No 270
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.43 E-value=4.3e+02 Score=29.63 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=47.9
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEeecCCceeeec
Q 009269 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEW 91 (538)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~VilrpGPyi~aEw 91 (538)
+-|-..|.+--+.-++++++.|+.++++.-..| ...++...++.+++.|+.|.+- ||-++
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~ln------------d~~n~~~ai~~ak~~G~~~~~~----i~yt~ 156 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALN------------DPRNIQQALRAVKKTGKEAQLC----IAYTT 156 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccCC------------CHHHHHHHHHHHHHcCCEEEEE----EEEEe
Confidence 445556667777779999999999999977665 2346999999999999998876 78764
No 271
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=20.42 E-value=2.5e+02 Score=32.35 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=44.9
Q ss_pred CCCCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 18 y~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
|-..|.+..+..++++++.|+.+++++-+.|.. +++...++.+++.|+.+..-
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~------------~n~~~~i~~~k~~G~~~~~~ 142 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFDALNDA------------RNLKVAIDAIKSHKKHAQGA 142 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcccCcch------------HHHHHHHHHHHHcCCEEEEE
Confidence 556788888999999999999999997666643 46899999999999988766
No 272
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=20.35 E-value=2.3e+02 Score=31.30 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=43.7
Q ss_pred CCCHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 20 r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
.+..+..++.++..++.|.++=-+++. |-|.|.=-.|+=+- +.+++++|++++++||..
T Consensus 172 ~~~~~~le~~~~~~~~~~~~~k~v~l~-nP~NPTG~~~s~e~---l~~ll~~a~~~~~~iI~D 230 (468)
T PLN02450 172 QITESALEEAYQQAQKLNLKVKGVLIT-NPSNPLGTTTTRTE---LNLLVDFITAKNIHLISD 230 (468)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCCcccCHHH---HHHHHHHHHHCCcEEEEE
Confidence 344566666666666667666556777 78888866666554 899999999999999987
No 273
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.31 E-value=1.6e+02 Score=29.78 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeEEee
Q 009269 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (538)
Q Consensus 28 ~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~Vilr 82 (538)
+.++++++.|+..|+++++.+.. ..+.+.++.|++.|+.|.+-
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~------------~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA------------DVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH------------HHHHHHHHHHHHCCCeEEEE
Confidence 66788899999999998877632 25889999999999988776
No 274
>PRK07534 methionine synthase I; Validated
Probab=20.30 E-value=3.9e+02 Score=28.42 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCCCCcccccccCCCceecCCCH-HHHHHHHHHHHHHHHHhccccccCCCCEEEEccccccCCCCCcHHHHHHHHHHHHH
Q 009269 92 DLGGFPAWLLAKKPALKLRSSDR-AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARA 170 (538)
Q Consensus 92 ~~GG~P~Wl~~~~p~~~~R~~d~-~yl~~~~~~~~~l~~~l~~~~~~~gGpII~~QVENEyg~~~~~~~y~~~L~~~~~~ 170 (538)
+|.|.|.|... .... ..+| .|.+.+++|. ..|=.||+ ||.+...+|++.|++.+..
T Consensus 239 PNaG~p~~~~~---~~~~-~~~p~~~~~~~~~~~------------~~Ga~iIG-------GCCGTtP~hI~~la~~l~~ 295 (336)
T PRK07534 239 GNAGIPKYVDG---HIHY-DGTPELMAEYAVLAR------------DAGARIIG-------GCCGTMPEHLAAMRAALDA 295 (336)
T ss_pred cCCCCcccCCC---cccc-CCCHHHHHHHHHHHH------------HcCCcEEe-------eecCCCHHHHHHHHHHHcc
Confidence 46778877532 2222 2344 3344444442 22555655 6777899999999998754
No 275
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=20.18 E-value=3.5e+02 Score=27.66 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=40.0
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHc-CCeEEeecCC
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKL-DLLVMLRPGP 85 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~-GL~VilrpGP 85 (538)
.++.|.+..++++++|+..|++.+.--... ..|..--.....+.++++.+++. ++-|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~-~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVK-GGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCC-CCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 378999999999999999999975422111 11221111123466777877776 7777777443
No 276
>PRK07094 biotin synthase; Provisional
Probab=20.16 E-value=88 Score=32.48 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCEEEEccc---CCCcCCCCCceeecchhhHHHHHHHHHHcCCeE
Q 009269 27 EDRLLRAKALGLNTIQTYVP---WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (538)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~---Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~V 79 (538)
++.++.||++|++.|.+.+- -..++.--...++ .+..+.++.+++.|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~---~~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSF---ENRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCH---HHHHHHHHHHHHcCCee
Confidence 45677888888887775331 1111111112233 24777888888999864
No 277
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=20.06 E-value=1.9e+02 Score=30.22 Aligned_cols=76 Identities=20% Similarity=0.381 Sum_probs=46.7
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEcccCCCcCCCCCceeecchhhHHHHHHHHHHcCCeE-----EeecCCceeeecCCCCC
Q 009269 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV-----MLRPGPYICAEWDLGGF 96 (538)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~Dl~~fl~la~~~GL~V-----ilrpGPyi~aEw~~GG~ 96 (538)
..+.-.+.+++++++|+. |..|+........++ +...|+.+.++.|.+.+-.| .+.||....-.|..|-+
T Consensus 153 t~~~~~~ai~~~~~~Gi~-v~~~~i~G~P~~se~----ea~ed~~~ti~~~~~l~~~vs~~~l~v~~gT~l~~~~~~G~~ 227 (313)
T TIGR01210 153 TFEDFIRAAELARKYGAG-VKAYLLFKPPFLSEK----EAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWNRGLY 227 (313)
T ss_pred CHHHHHHHHHHHHHcCCc-EEEEEEecCCCCChh----hhHHHHHHHHHHHHhcCCcEEEECCEEeCCCHHHHHHHcCCC
Confidence 466778899999999998 888888775322222 23345677788887765222 33455544444555543
Q ss_pred -cccccc
Q 009269 97 -PAWLLA 102 (538)
Q Consensus 97 -P~Wl~~ 102 (538)
|.||..
T Consensus 228 ~pp~lws 234 (313)
T TIGR01210 228 RPPWLWS 234 (313)
T ss_pred CCCCHHH
Confidence 455544
Done!