BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009270
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 12/218 (5%)
Query: 212 DVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV------FMHG 265
D LL+FLRAR F V+ A M +N +WRKD+G + +L +D D + ++ + H
Sbjct: 52 DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTIL-QDFHYDEKPLIAKFYPQYYHK 110
Query: 266 FDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGG--VS 323
D+DG PV + G ++ + EE+ +K L W + + + R G V
Sbjct: 111 TDKDGRPVYFEELGAVNLHEM--NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVE 168
Query: 324 TIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPF 383
T + DLK + ++A + Q+ YPE + K IN P+ + + PF
Sbjct: 169 TSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 228
Query: 384 MTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLS 421
+ T SK G S E L K I E++P+++GG S
Sbjct: 229 LDPVTVSKIFILGSSYQKE-LLKQIPAENLPVKFGGKS 265
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 130/288 (45%), Gaps = 30/288 (10%)
Query: 212 DVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV--FMHGFDRD 269
D LL++LRAR F ++ + M++ +++RK I+ +++ + +++ + M G+D D
Sbjct: 35 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94
Query: 270 GHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVN 329
G PV Y++ G K L + R K + L+ + V TI +
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECEL-LLQECAHQTTKLGRKVETITIIY 153
Query: 330 DLKNSPGPGKRELRIATKQA----LQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMT 385
D + G G + L +A L + ++NYPE + + + P + + +I PF++
Sbjct: 154 DCE---GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLS 210
Query: 386 QRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVD-----YCDCNPEFTIDDPATEI 440
+ T+ K + G + E L K+ISP+ VP++YGG D C + D P
Sbjct: 211 EDTRKKIMVLG-ANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYY 269
Query: 441 T---VKPATKQNVEI-----------IIYEKCTVVWEIRVVGWEVSYG 474
VK + +V+I I++ C + W+ G +V +G
Sbjct: 270 VRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFG 317
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 130/288 (45%), Gaps = 30/288 (10%)
Query: 212 DVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV--FMHGFDRD 269
D LL++LRAR F ++ + M++ +++RK I+ +++ + +++ + M G+D D
Sbjct: 35 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94
Query: 270 GHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVN 329
G PV Y++ G K L + R K + L+ + V TI +
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECEL-LLQECAHQTTKLGRKVETITIIY 153
Query: 330 DLKNSPGPGKRELRIATKQA----LQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMT 385
D + G G + L +A L + ++NYPE + + + P + + +I PF++
Sbjct: 154 DCE---GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLS 210
Query: 386 QRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVD-----YCDCNPEFTIDDPATEI 440
+ T+ K + G + E L K+ISP+ VP++YGG D C + D P
Sbjct: 211 EDTRKKIMVLG-ANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYY 269
Query: 441 T---VKPATKQNVEI-----------IIYEKCTVVWEIRVVGWEVSYG 474
VK + +V+I I++ C + W+ G +V +G
Sbjct: 270 VRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFG 317
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 39/222 (17%)
Query: 215 LLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLE-----------KVVFM 263
L++LRA + ++D I T+ WR++FGI + L E+ GD + K V +
Sbjct: 90 FLRYLRATKWVLKDCIDRITMTLAWRREFGI-SHLGEEHGDKITADLVAVENESGKQVIL 148
Query: 264 HGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVS 323
G++ D P+ Y G QN KT + + + F+ LER I +F P G
Sbjct: 149 -GYENDARPILYLKPGR-QN----TKTSHRQVQHLVFM------LERVI---DFMPAGQD 193
Query: 324 TIFQVNDLKNSPG----PGKRELRI--ATKQALQLLQDNYPEFVAKQVFINVPWWYLAFH 377
++ + D K+ P PG ++ K+ L +LQ +YPE + K + N+PW F
Sbjct: 194 SLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFL 253
Query: 378 TMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGG 419
+I PF+ T+ K VF P KY+ + YGG
Sbjct: 254 KLIHPFIDPLTREKLVFDEP------FVKYVPKNELDSLYGG 289
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 102/236 (43%), Gaps = 30/236 (12%)
Query: 207 KDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG----IEALLNEDLGDDLEKV-- 260
K+ D LL+FLRAR F + + M T +WR+++G IE N +D E++
Sbjct: 56 KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKL 115
Query: 261 -----VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRM---------KFLRWRIQ 306
+ H D+DG P+ + G K++Y T EK+M F +R+
Sbjct: 116 AKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKIT---TEKQMLRNLVKEYELFATYRVP 172
Query: 307 FLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVF 366
R L + T V DLK + K + Q+ YPE + K
Sbjct: 173 ACSRRAGYL------IETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYI 226
Query: 367 INVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSV 422
I+ P+ + M+ PF+ T SK G S E L K I E++P++YGG SV
Sbjct: 227 IHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE-LLKQIPIENLPVKYGGTSV 281
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 102/236 (43%), Gaps = 30/236 (12%)
Query: 207 KDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG----IEALLNEDLGDDLEKV-- 260
K+ D LL+FLRAR F + + M T +WR+++G IE N +D E++
Sbjct: 56 KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKL 115
Query: 261 -----VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRM---------KFLRWRIQ 306
+ H D+DG P+ + G K++Y T EK+M F +R+
Sbjct: 116 AKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKIT---TEKQMLRNLVKEYELFATYRVP 172
Query: 307 FLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVF 366
R L + T V DLK + K + Q+ YPE + K
Sbjct: 173 ACSRRAGYL------IETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYI 226
Query: 367 INVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSV 422
I+ P+ + M+ PF+ T SK G S E L K I E++P++YGG SV
Sbjct: 227 IHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE-LLKQIPIENLPVKYGGTSV 281
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 126/288 (43%), Gaps = 30/288 (10%)
Query: 212 DVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV--FMHGFDRD 269
D LL++LRAR F ++ + ++ +++RK I+ +++ + +++ + G+D D
Sbjct: 35 DYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGXCGYDLD 94
Query: 270 GHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVN 329
G PV Y++ G K L + R K + L+ + V TI +
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECEL-LLQECAHQTTKLGRKVETITIIY 153
Query: 330 DLKNSPGPGKRELRIATKQA----LQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMT 385
D + G G + L +A L ++NYPE + + + P + + +I PF++
Sbjct: 154 DCE---GLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLS 210
Query: 386 QRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVD-----YCDCNPEFTIDDPATEI 440
+ T+ K G + E L K+ISP+ VP++YGG D C + D P
Sbjct: 211 EDTRKKIXVLG-ANWKEVLLKHISPDQVPVEYGGTXTDPDGNPKCKSKINYGGDIPRKYY 269
Query: 441 T---VKPATKQNVEI-----------IIYEKCTVVWEIRVVGWEVSYG 474
VK + +V+I I++ C + W+ G +V +G
Sbjct: 270 VRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFXSDGADVGFG 317
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 21/237 (8%)
Query: 202 GVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG-IEALLNEDLGDDLEKV 260
GVPL TD LL+FLRARDF + A+ ++KN +WR + I A L+ L K
Sbjct: 39 GVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKA 98
Query: 261 VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFL--ERSIRKLNFR 318
+ HG R P V +Y D + + +R+ + E ++++ +
Sbjct: 99 GY-HGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQ 150
Query: 319 PGGVSTIFQVNDLKNSPGPGKRELRI---ATKQALQLLQDNYPEFVAKQVFINVPWWYLA 375
G+ IF + + S +I K+ +L D++P V IN P + A
Sbjct: 151 RNGIKAIFDLEGWQFS-----HAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHA 205
Query: 376 FHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFT 432
+MI PF+T++ K + G + ++L ++ P+ +P++YGG D E+T
Sbjct: 206 VFSMIKPFLTEKIKERIHMHG-NNYKQSLLQHF-PDILPLEYGGEEFSMEDICQEWT 260
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 21/237 (8%)
Query: 202 GVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG-IEALLNEDLGDDLEKV 260
GVPL TD LL+FLRARDF + A+ ++KN +WR + I A L+ L K
Sbjct: 23 GVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKA 82
Query: 261 VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFL--ERSIRKLNFR 318
+ HG R P V +Y D + + +R+ + E ++++ +
Sbjct: 83 GY-HGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQ 134
Query: 319 PGGVSTIFQVNDLKNSPGPGKRELRI---ATKQALQLLQDNYPEFVAKQVFINVPWWYLA 375
G+ IF + + S +I K+ +L D++P V IN P + A
Sbjct: 135 RNGIKAIFDLEGWQFS-----HAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHA 189
Query: 376 FHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFT 432
+ I PF+T++ K + G + ++L ++ P+ +P++YGG D E+T
Sbjct: 190 VFSXIKPFLTEKIKERIHXHG-NNYKQSLLQHF-PDILPLEYGGEEFSXEDICQEWT 244
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 86/212 (40%), Gaps = 21/212 (9%)
Query: 214 ILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGF-----DR 268
L+F+RAR F V A+ +++ + +R + L + L + + G+ R
Sbjct: 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQY---PELFDSLSPEAVRCTIEAGYPGVLSSR 150
Query: 269 DGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQV 328
D + ++ +N Q TF + + F+ LE+ + + G I
Sbjct: 151 DKYGRVVXLFN-IENWQSQEITFDEILQAYCFI------LEKLLENEETQINGFCII--- 200
Query: 329 NDLKNSPGPGKRELRIA-TKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQR 387
+ K LR + ++ + LQD++P + FI+ PW++ + ++ PF+ +
Sbjct: 201 ENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSK 260
Query: 388 TKSKFVFAGPSKSTETLFKYISPEHVPIQYGG 419
+ G S ++ I +P +GG
Sbjct: 261 LLERVFVHGDDLS--GFYQEIDENILPSDFGG 290
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 88/215 (40%), Gaps = 27/215 (12%)
Query: 214 ILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGF------- 266
L+F+RAR F V A+ +++ + +R + L + L + + G+
Sbjct: 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQY---PELFDSLSPEAVRCTIEAGYPGVLSSR 150
Query: 267 DRDGHPV-CYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTI 325
D+ G V +N+ +N Q TF + + F+ LE+ + + G I
Sbjct: 151 DKYGRVVMLFNI----ENWQSQEITFDEILQAYCFI------LEKLLENEETQINGFCII 200
Query: 326 FQVNDLKNSPGPGKRELRIA-TKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFM 384
+ K LR + ++ + +LQD++P FI+ PW++ + ++ PF+
Sbjct: 201 ---ENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFL 257
Query: 385 TQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGG 419
+ + G S ++ I +P +GG
Sbjct: 258 KSKLLERVFVHGDDLS--GFYQEIDENILPSDFGG 290
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 218 FLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVF----------MHGFD 267
L +DF R A KN I + GI ++NE+ +E++VF H FD
Sbjct: 95 LLTGKDFDSRKATKHAKNAIDXXINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFD 154
Query: 268 RDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLN-FRPGGVST 324
D + ++ G F +K FSD ++ K + ++L+ +I+ + GG+ T
Sbjct: 155 ADLLVILSDIDG-FYDKN--PSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVT 209
>pdb|2GFT|A Chain A, Crystal Structure Of The E263a Nucleophile Mutant Of
Bacillus Licheniformis Endo-beta-1,4-galactanase In
Complex With Galactotriose
pdb|2GFT|B Chain B, Crystal Structure Of The E263a Nucleophile Mutant Of
Bacillus Licheniformis Endo-beta-1,4-galactanase In
Complex With Galactotriose
Length = 399
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 456 EKCTVVWEIRVVGWEVSYGAEFVPEAKDKY 485
EK +WE GW SY AE+ PE K+
Sbjct: 334 EKNKALWETYGSGWATSYAAEYDPEDAGKW 363
>pdb|1R8L|A Chain A, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis
pdb|1R8L|B Chain B, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis
pdb|1UR0|A Chain A, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis In Complex With Two Oligosaccharide
Products.
pdb|1UR0|B Chain B, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis In Complex With Two Oligosaccharide
Products.
pdb|1UR4|A Chain A, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis In Complex With Two Oligosaccharide
Products.
pdb|1UR4|B Chain B, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis In Complex With Two Oligosaccharide
Products.
pdb|2CCR|A Chain A, Structure Of Beta-1,4-Galactanase
pdb|2CCR|B Chain B, Structure Of Beta-1,4-Galactanase
pdb|2J74|A Chain A, Structure Of Beta-1,4-Galactanase
pdb|2J74|B Chain B, Structure Of Beta-1,4-Galactanase
Length = 399
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 456 EKCTVVWEIRVVGWEVSYGAEFVPEAKDKY 485
EK +WE GW SY AE+ PE K+
Sbjct: 334 EKNKALWETYGSGWATSYAAEYDPEDAGKW 363
>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
1(Vrk1)
Length = 368
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 396 GPSKSTETLFKYISPEHVPIQYGGLSVDYC----------------DCNPEFTIDDPATE 439
G K++ L Y +P+ V + GL+ YC D EFT D
Sbjct: 176 GDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHN- 234
Query: 440 ITVKPATKQNVEIIIYEKCTVVWEIRVVGWE 470
V P+ + ++EI+ Y C + W + WE
Sbjct: 235 -GVAPSRRGDLEILGY--CMIQWLTGHLPWE 262
>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
Length = 361
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 396 GPSKSTETLFKYISPEHVPIQYGGLSVDYC----------------DCNPEFTIDDPATE 439
G K++ L Y +P+ V + GL+ YC D EFT D
Sbjct: 176 GDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHN- 234
Query: 440 ITVKPATKQNVEIIIYEKCTVVWEIRVVGWE 470
V P+ + ++EI+ Y C + W + WE
Sbjct: 235 -GVAPSRRGDLEILGY--CMIQWLTGHLPWE 262
>pdb|1T2B|A Chain A, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
pdb|1T2B|B Chain B, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
Length = 397
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 467 VGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKK 526
+GW +YG +V + +IQ S ++ V R++ E ++ D+P KK
Sbjct: 36 IGWSEAYGGHWVVAGYKEIQAVIQNTKAFS--NKGVTFPRYETGEFELMMAGQDDPVHKK 93
Query: 527 KKLL 530
+ L
Sbjct: 94 YRQL 97
>pdb|3BDZ|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BDZ|B Chain B, The Role Of Asn 242 In P450cin
pdb|3BE0|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BE0|B Chain B, The Role Of Asn 242 In P450cin
Length = 397
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 467 VGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKK 526
+GW +YG +V + +IQ S ++ V R++ E ++ D+P KK
Sbjct: 36 IGWSEAYGGHWVVAGYKEIQAVIQNTKAFS--NKGVTFPRYETGEFELMMAGQDDPVHKK 93
Query: 527 KKLL 530
+ L
Sbjct: 94 YRQL 97
>pdb|4FB2|A Chain A, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|B Chain B, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|C Chain C, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|D Chain D, Crystal Structure Of Substrate-Free P450cin
pdb|4FYZ|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FYZ|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FMX|A Chain A, Crystal Structure Of Substrate-Bound P450cin
pdb|4FMX|B Chain B, Crystal Structure Of Substrate-Bound P450cin
Length = 398
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 467 VGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKK 526
+GW +YG +V + +IQ S ++ V R++ E ++ D+P KK
Sbjct: 37 IGWSEAYGGHWVVAGYKEIQAVIQNTKAFS--NKGVTFPRYETGEFELMMAGQDDPVHKK 94
Query: 527 KKLL 530
+ L
Sbjct: 95 YRQL 98
>pdb|1X8H|A Chain A, The Mono-Zinc Carbapenemase Cpha (N220g Mutant) Shows A
Zn(Ii)- Nh2 Arg Coordination
Length = 228
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 344 IATKQALQLLQDNYPEFVA--KQVFINVPWWYLAFHTMI--SPFMTQRTKSKFVFAGPSK 399
++T+Q L++ ++ E VA ++ P L ++ F Q K + +AGP+
Sbjct: 88 VSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAH 147
Query: 400 STETLFKYISPEHVPIQYGG 419
+ + +F Y E V YGG
Sbjct: 148 TPDGIFVYFPDEQV--LYGG 165
>pdb|1X8I|A Chain A, Crystal Structure Of The Zinc Carbapenemase Cpha In
Complex With The Antibiotic Biapenem
pdb|3FAI|A Chain A, The Di Zinc Carbapenemase Cpha N220g Mutant
pdb|3IOF|A Chain A, Crystal Structure Of Cpha N220g Mutant With Inhibitor 10a
pdb|3IOG|A Chain A, Crystal Structure Of Cpha N220g Mutant With Inhibitor 18
Length = 227
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 344 IATKQALQLLQDNYPEFVA--KQVFINVPWWYLAFHTMI--SPFMTQRTKSKFVFAGPSK 399
++T+Q L++ ++ E VA ++ P L ++ F Q K + +AGP+
Sbjct: 88 VSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAH 147
Query: 400 STETLFKYISPEHVPIQYGG 419
+ + +F Y E V YGG
Sbjct: 148 TPDGIFVYFPDEQV--LYGG 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,513,094
Number of Sequences: 62578
Number of extensions: 524811
Number of successful extensions: 1388
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 31
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)