Query 009270
Match_columns 538
No_of_seqs 347 out of 1415
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 1.2E-70 4.3E-75 583.9 34.1 350 109-537 2-385 (403)
2 3q8g_A CRAL-TRIO domain-contai 100.0 5.5E-46 1.9E-50 383.9 19.9 250 105-435 25-293 (320)
3 1aua_A Phosphatidylinositol tr 100.0 9.5E-46 3.2E-50 377.0 19.5 251 104-435 15-278 (296)
4 1r5l_A Alpha-TTP, protein (alp 100.0 2.2E-42 7.4E-47 345.1 17.5 200 207-423 28-235 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 2.6E-40 8.9E-45 340.8 15.6 199 208-423 88-294 (316)
6 3pg7_A Neurofibromin; SEC lipi 98.9 1.3E-09 4.5E-14 108.7 6.3 133 259-413 11-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.7 1.1E-08 3.8E-13 103.7 4.7 133 259-413 30-163 (290)
8 2cio_B Inhibitor of cysteine p 56.0 54 0.0019 28.1 8.8 84 438-524 13-102 (121)
9 3m86_A Amoebiasin-2; cysteine 52.9 78 0.0027 26.6 9.1 91 436-536 14-111 (111)
10 3jqw_A COLH protein, collagena 52.5 50 0.0017 28.4 7.9 33 503-537 85-117 (121)
11 4g9s_B Inhibitor of G-type lys 51.0 78 0.0027 26.4 8.8 86 441-536 21-109 (111)
12 2dam_A ETEA protein; KIAA0887, 50.6 24 0.00082 27.2 5.0 24 212-235 34-57 (67)
13 1gr3_A Collagen X; extracellul 50.5 8.2 0.00028 35.0 2.7 22 499-521 62-83 (160)
14 2wnv_C C1Q chain C, complement 48.8 9.2 0.00031 33.3 2.6 21 499-520 37-57 (131)
15 2wnv_A C1Q chain A, complement 48.0 9.4 0.00032 33.3 2.6 23 498-521 32-54 (134)
16 2dal_A Protein KIAA0794; FAS a 47.7 38 0.0013 25.6 5.7 24 211-234 29-52 (62)
17 2wnv_B C1Q chain B, complement 47.0 10 0.00034 33.3 2.6 22 498-520 35-56 (136)
18 2ka3_A Emilin-1; C1Q-like doma 44.4 11 0.00038 34.1 2.6 21 499-520 46-66 (162)
19 1ufz_A Hypothetical protein BA 42.6 1E+02 0.0034 24.9 7.6 29 208-236 47-75 (83)
20 1wgl_A TOLL-interacting protei 41.5 27 0.00092 26.3 3.9 28 208-235 21-48 (59)
21 2h7w_A Chagasin; beta-strands, 38.6 99 0.0034 26.9 7.7 78 435-524 30-113 (131)
22 1o91_A Collagen alpha 1(VIII) 35.3 19 0.00064 33.2 2.6 18 503-520 83-100 (178)
23 1nqj_A Class 1 collagenase; be 34.7 1.2E+02 0.0042 25.9 7.5 31 503-537 89-119 (119)
24 2xr4_A Lectin; sugar binding p 33.1 1.6E+02 0.0053 25.2 7.6 84 384-479 9-97 (116)
25 2q3l_A Uncharacterized protein 32.6 86 0.0029 26.7 6.3 94 267-387 16-111 (126)
26 4f3j_A Complement C1Q tumor ne 29.8 27 0.00092 30.8 2.6 18 503-520 38-55 (148)
27 2c34_A ICP, inhibitor of cyste 27.2 2.1E+02 0.007 24.1 7.7 91 435-535 12-115 (116)
28 1z96_A DNA-damage, UBA-domain 26.8 64 0.0022 21.4 3.6 23 211-233 17-39 (40)
29 4dzg_A PLIG; lysozyme inhibito 26.5 62 0.0021 27.4 4.2 85 441-536 23-112 (114)
30 1v92_A NSFL1 cofactor P47; 3-h 25.0 48 0.0016 23.0 2.7 24 211-234 19-42 (46)
31 1otr_A Protein CUE2; protein-p 22.4 77 0.0026 23.0 3.3 29 208-236 16-44 (49)
32 2dhy_A CUE domain-containing p 22.3 89 0.003 24.1 3.9 29 208-236 30-58 (67)
33 4dou_A Adiponectin; single-cha 22.0 44 0.0015 35.2 2.8 49 471-520 27-77 (442)
34 2dah_A Ubiquilin-3; UBA domain 21.0 98 0.0033 22.7 3.8 25 212-236 24-48 (54)
35 1wr1_B Ubiquitin-like protein 20.2 83 0.0028 23.5 3.3 26 211-236 31-56 (58)
36 2knz_A Ubiquilin-4; cytoplasm, 20.2 76 0.0026 23.1 3.0 25 211-235 25-49 (53)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.2e-70 Score=583.92 Aligned_cols=350 Identities=24% Similarity=0.404 Sum_probs=298.6
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcchhhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCCCCCCC
Q 009270 109 SNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPP 188 (538)
Q Consensus 109 s~~~~~L~~~e~~aL~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (538)
||++++|++.|+++|++||+.|++....
T Consensus 2 ~g~~~~l~~~q~~~l~~lr~~l~~~~~~---------------------------------------------------- 29 (403)
T 1olm_A 2 SGRVGDLSPRQKEALAKFRENVQDVLPA---------------------------------------------------- 29 (403)
T ss_dssp CSBTTBCCHHHHHHHHHHHHHHGGGGGG----------------------------------------------------
T ss_pred CCCccCCCHHHHHHHHHHHHHHHhhccC----------------------------------------------------
Confidence 7999999999999999999999874221
Q ss_pred CCCCCCcchhhhcCCCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCccCccccccc-ccc--eEEeec
Q 009270 189 PPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDD-LEK--VVFMHG 265 (538)
Q Consensus 189 ~~~~~~~~~~~~wg~pll~~~~~D~~LLRFLRArkfdVekA~~mL~~~l~WRk~~~iD~i~~~~~~~e-l~k--~~~l~G 265 (538)
+ +..+|.+||||||||+||+++|.+||+++++||++++++.+.. +..++ +.+ ..+++|
T Consensus 30 -----------------l-~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g 90 (403)
T 1olm_A 30 -----------------L-PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCG 90 (403)
T ss_dssp -----------------S-SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEE
T ss_pred -----------------C-CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeec
Confidence 1 2478999999999999999999999999999999999988775 33222 221 235789
Q ss_pred cCCCCCcEEEEecCccChhhhhhccccCHHHHHHHHHHHHHHHHHHHHHhccC----CCCeeEEEEEEeCCCCCCCCchh
Q 009270 266 FDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFR----PGGVSTIFQVNDLKNSPGPGKRE 341 (538)
Q Consensus 266 ~Dk~GrPV~~~~~G~~d~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l~~~----~~~v~~iv~IiDl~g~sgl~~~~ 341 (538)
+|++||||+|+++|++|++++++.. +..+++|++++++|.+++.+..+ +.+++++++|+||+|++...+..
T Consensus 91 ~Dk~GrpV~~~~~g~~d~~~l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~ 165 (403)
T 1olm_A 91 YDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWK 165 (403)
T ss_dssp ECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCH
T ss_pred cCCCcCEEEEEecCCCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhh
Confidence 9999999999999999999887643 36899999999999999876543 34689999999999774222211
Q ss_pred -HHHHHHHHHHhhccccccccceEEEEeCChHHHHHHHhhcccCChhhhcceEEcCCCCchHHHhcccCCCCccccCCCC
Q 009270 342 -LRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGL 420 (538)
Q Consensus 342 -l~~~~k~il~llq~~YPE~L~rI~IINaP~~f~~lw~lVKpfL~~~Tr~KI~~lg~~~~~e~L~k~Id~d~LP~~yGG~ 420 (538)
....++.++.++|+|||++|+++||||+||+|.++|++|||||+++|++||+|+++ ++.+.|.+||++++||++|||+
T Consensus 166 ~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yGG~ 244 (403)
T 1olm_A 166 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGT 244 (403)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSS
T ss_pred HHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhCCC
Confidence 25678999999999999999999999999999999999999999999999999986 6888999999999999999999
Q ss_pred cCCCCCCCCCccc------------------cCCC-ccccccCCCceeEEEEEe-cCeeEEEEEEEecceeeEEEEEeec
Q 009270 421 SVDYCDCNPEFTI------------------DDPA-TEITVKPATKQNVEIIIY-EKCTVVWEIRVVGWEVSYGAEFVPE 480 (538)
Q Consensus 421 ~~d~~d~dp~c~~------------------~d~~-~~v~V~~gs~~~v~i~V~-~g~~L~WeF~t~~~DI~Fgi~f~~~ 480 (538)
+.+ .++++.|.. .+.. +.++|++|++++|+|+|. +|++|+|+|+|+++||+|||+|.+.
T Consensus 245 ~~~-~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~DI~F~v~~~~~ 323 (403)
T 1olm_A 245 MTD-PDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTK 323 (403)
T ss_dssp BCC-TTCCTTCTTTCBCCCCCCGGGCSCSSCCCCCSEEEEECTTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEEEC--
T ss_pred cCC-CCCCcccccccccCCCCCcccccCCCcccccceEEEEcCCCEEEEEEEEcCCCCEEEEEEEecCCcEEEEEEEecc
Confidence 987 678888852 1223 349999999999999998 5999999999999999999999853
Q ss_pred C----CCceEEEEecCcccCCCCcceecCeEEcCcCcEEEEEEECCCC--CceeEEEEEEeec
Q 009270 481 A----KDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTS--KKKKLLYRFKVEP 537 (538)
Q Consensus 481 ~----~g~~~~~V~~~~r~~~~~~pve~Gs~~~~epG~yvL~fDNs~S--~sKkv~Y~i~v~~ 537 (538)
. +++....|+|..|+.||..+ ++|+|+|.+||+|+|+|||+|| ++|+|.|+|+|++
T Consensus 324 ~~~~~~~~~~~~v~p~~r~~~~~~~-~~G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~ 385 (403)
T 1olm_A 324 MGERQRAGEMTEVLPNQRYNSHLVP-EDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLL 385 (403)
T ss_dssp --CCCCGGGSEEEEEEEEECTTTSC-EEEEEECCSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred cccccCCCcceEEeeeeeecCcccc-ccCEEEcCCCeEEEEEEeccccceeceEEEEEEEEeC
Confidence 2 21334567789999999999 8999999999999999999999 8999999999975
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=5.5e-46 Score=383.88 Aligned_cols=250 Identities=26% Similarity=0.426 Sum_probs=208.5
Q ss_pred cccccCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcchhhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCCC
Q 009270 105 FKEESNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAE 184 (538)
Q Consensus 105 ~~~~s~~~~~L~~~e~~aL~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (538)
...-||++|+|++.|+++|++||+.|++. +
T Consensus 25 ~~~~~g~~~~lt~~q~~~l~~lR~~l~~~---~----------------------------------------------- 54 (320)
T 3q8g_A 25 PNALPGTPGNLTKEQEEALLQFRSILLEK---N----------------------------------------------- 54 (320)
T ss_dssp TTSCTTSTTCCCHHHHHHHHHHHHHHHHT---T-----------------------------------------------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhc---C-----------------------------------------------
Confidence 44578999999999999999999999973 0
Q ss_pred CCCCCCCCCCcchhhhcCCCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCccCcccccc---------
Q 009270 185 VAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGD--------- 255 (538)
Q Consensus 185 ~~~~~~~~~~~~~~~~wg~pll~~~~~D~~LLRFLRArkfdVekA~~mL~~~l~WRk~~~iD~i~~~~~~~--------- 255 (538)
+....+|.+||||||||+||+++|.+||+++++||+++++|++......+
T Consensus 55 ---------------------~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~ 113 (320)
T 3q8g_A 55 ---------------------YKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERI 113 (320)
T ss_dssp ---------------------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHH
T ss_pred ---------------------CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHH
Confidence 11357899999999999999999999999999999999998877543211
Q ss_pred cccc--eEEeeccCCCCCcEEEEecCccChhhhhhccccCHHHHHHHHHHHHHHHHHHHHH-hc----cCCCCeeEEEEE
Q 009270 256 DLEK--VVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRK-LN----FRPGGVSTIFQV 328 (538)
Q Consensus 256 el~k--~~~l~G~Dk~GrPV~~~~~G~~d~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~-l~----~~~~~v~~iv~I 328 (538)
.+.+ ..+++|+|++||||+|+++|++|++++++.+ ...+++++.++.+|.+++. +. ..+..++++++|
T Consensus 114 ~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~-----~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~I 188 (320)
T 3q8g_A 114 KLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKIT-----TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTV 188 (320)
T ss_dssp HHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEE
T ss_pred HHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccC-----CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEE
Confidence 1222 3578999999999999999999999887643 2578899999999988742 11 113457899999
Q ss_pred EeCCCCCCCCchhH---HHHHHHHHHhhccccccccceEEEEeCChHHHHHHHhhcccCChhhhcceEEcCCCCchHHHh
Q 009270 329 NDLKNSPGPGKREL---RIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLF 405 (538)
Q Consensus 329 iDl~g~sgl~~~~l---~~~~k~il~llq~~YPE~L~rI~IINaP~~f~~lw~lVKpfL~~~Tr~KI~~lg~~~~~e~L~ 405 (538)
+||+|+ ++.++ ...++.++.++|+|||++|+++||||+|++|.++|++|+|||+++|++||+|+++ ++.+.|.
T Consensus 189 iD~~g~---sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~ 264 (320)
T 3q8g_A 189 LDLKGI---SLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELL 264 (320)
T ss_dssp EECTTC---CHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHH
T ss_pred EECCCC---CHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHH
Confidence 999976 34444 4678999999999999999999999999999999999999999999999999986 5789999
Q ss_pred cccCCCCccccCCCCcCCCCCCCCCccccC
Q 009270 406 KYISPEHVPIQYGGLSVDYCDCNPEFTIDD 435 (538)
Q Consensus 406 k~Id~d~LP~~yGG~~~d~~d~dp~c~~~d 435 (538)
++|++++||++|||+++. .+.+++|...|
T Consensus 265 ~~i~~~~LP~~yGG~~~~-~~~~ggc~~~~ 293 (320)
T 3q8g_A 265 KQIPIENLPVKYGGTSVL-HNPNDKFYYSD 293 (320)
T ss_dssp HHSCGGGSBGGGTSCBCC-SSTTSCGGGBC
T ss_pred hhCChhhCChhhCCCCCC-CCCCCCeecCC
Confidence 999999999999999864 23467786543
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=9.5e-46 Score=376.99 Aligned_cols=251 Identities=27% Similarity=0.398 Sum_probs=207.8
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcchhhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCC
Q 009270 104 SFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPA 183 (538)
Q Consensus 104 ~~~~~s~~~~~L~~~e~~aL~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (538)
+.+..+|++++|++.|+++|++||+.|++. +
T Consensus 15 ~~~~~~~~~~~l~~~q~~~l~~lr~~l~~~---~---------------------------------------------- 45 (296)
T 1aua_A 15 PPDALPGTPGNLDSAQEKALAELRKLLEDA---G---------------------------------------------- 45 (296)
T ss_dssp CTTSCTTSTTTCCTTHHHHHHHHHHHHHHT---T----------------------------------------------
T ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHHHhc---C----------------------------------------------
Confidence 344578999999999999999999999862 0
Q ss_pred CCCCCCCCCCCcchhhhcCCCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCccCccccc---ccccce
Q 009270 184 EVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLG---DDLEKV 260 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~wg~pll~~~~~D~~LLRFLRArkfdVekA~~mL~~~l~WRk~~~iD~i~~~~~~---~el~k~ 260 (538)
++...+|.+||||||||+||+++|.+||+++++||++++++.+...... +.+.+.
T Consensus 46 ----------------------~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~ 103 (296)
T 1aua_A 46 ----------------------FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKF 103 (296)
T ss_dssp ----------------------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGG
T ss_pred ----------------------CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHh
Confidence 1235689999999999999999999999999999999999887654321 222222
Q ss_pred --EEeeccCCCCCcEEEEecCccChhhhhhccccCHHHHHHHHHHHHHHHHHHHHHhc----c-CCCCeeEEEEEEeCCC
Q 009270 261 --VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLN----F-RPGGVSTIFQVNDLKN 333 (538)
Q Consensus 261 --~~l~G~Dk~GrPV~~~~~G~~d~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l~----~-~~~~v~~iv~IiDl~g 333 (538)
.+++|+|++||||+|+++|++|++++++.. ..+++++++++.+|.+++.+. . .+..++++++|+||+|
T Consensus 104 ~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~-----~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g 178 (296)
T 1aua_A 104 YPQYYHKTDKDGRPVYFEELGAVNLHEMNKVT-----SEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG 178 (296)
T ss_dssp SCCEEEEECTTSCEEEEECGGGCCHHHHTTTC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred CCceecccCCCCCEEEEEeeccCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCC
Confidence 368999999999999999999999876543 357899999999998875321 1 1345889999999997
Q ss_pred CCCCCchhH---HHHHHHHHHhhccccccccceEEEEeCChHHHHHHHhhcccCChhhhcceEEcCCCCchHHHhcccCC
Q 009270 334 SPGPGKREL---RIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISP 410 (538)
Q Consensus 334 ~sgl~~~~l---~~~~k~il~llq~~YPE~L~rI~IINaP~~f~~lw~lVKpfL~~~Tr~KI~~lg~~~~~e~L~k~Id~ 410 (538)
+ ++.++ ...++.++.++|+|||++|+++||||+||+|.++|++|||||+++|++||+|+++ ++.+.|.+||++
T Consensus 179 ~---s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~ 254 (296)
T 1aua_A 179 I---SISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPA 254 (296)
T ss_dssp C---CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCS
T ss_pred C---CHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCH
Confidence 6 34444 4678999999999999999999999999999999999999999999999999986 588999999999
Q ss_pred CCccccCCCCcCCCCCCCCCccccC
Q 009270 411 EHVPIQYGGLSVDYCDCNPEFTIDD 435 (538)
Q Consensus 411 d~LP~~yGG~~~d~~d~dp~c~~~d 435 (538)
++||++|||++.+. +.+.+|...+
T Consensus 255 ~~LP~~yGG~~~~~-~~~~g~~~~~ 278 (296)
T 1aua_A 255 ENLPVKFGGKSEVD-ESKGGLYLSD 278 (296)
T ss_dssp SSSBGGGTSCBCCC-GGGCCSTTCC
T ss_pred hhCcHHhCCCCCCC-CCCCCceeCC
Confidence 99999999998752 3345676543
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=2.2e-42 Score=345.09 Aligned_cols=200 Identities=25% Similarity=0.366 Sum_probs=166.2
Q ss_pred CCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcC-C-CccCccccccccc-c-eEEeeccCCCCCcEEEEecCccC
Q 009270 207 KDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG-I-EALLNEDLGDDLE-K-VVFMHGFDRDGHPVCYNVYGEFQ 282 (538)
Q Consensus 207 ~~~~~D~~LLRFLRArkfdVekA~~mL~~~l~WRk~~~-i-D~i~~~~~~~el~-k-~~~l~G~Dk~GrPV~~~~~G~~d 282 (538)
+...+|.+||||||||+||+++|.+||+++++||++++ + +++....+...+. + ..+++|+|++||||+|.++|++|
T Consensus 28 ~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d 107 (262)
T 1r5l_A 28 PLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWD 107 (262)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCC
T ss_pred CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccC
Confidence 34578999999999999999999999999999999986 2 2222222211111 2 35688999999999999999999
Q ss_pred hhhhhhccccCHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEEEEeCCCCCCCCchhH----HHHHHHHHHhhccccc
Q 009270 283 NKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKREL----RIATKQALQLLQDNYP 358 (538)
Q Consensus 283 ~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~v~~iv~IiDl~g~sgl~~~~l----~~~~k~il~llq~~YP 358 (538)
++++ +..+++|+.++++|.+++... .++.++++|+|++|+ ++.++ ...++.++.++|+|||
T Consensus 108 ~~~~---------~~~~~~r~~~~~~E~~~~~~~---~~~~g~~~I~D~~g~---s~~~~~~~~~~~~k~~~~~~q~~yP 172 (262)
T 1r5l_A 108 PKVF---------TAYDVFRVSLITSELIVQEVE---TQRNGIKAIFDLEGW---QFSHAFQITPSVAKKIAAVLTDSFP 172 (262)
T ss_dssp TTTS---------CHHHHHHHHHHHHHHHTTSHH---HHHHCEEEEEECTTC---CHHHHHHCCHHHHHHHHHHHHTSSS
T ss_pred cccC---------CHHHHHHHHHHHHHHHHhChh---hcccceEEEEECCCC---CHHHHhccCHHHHHHHHHHHHhhCC
Confidence 8764 246789999999998764332 346789999999966 44444 3678999999999999
Q ss_pred cccceEEEEeCChHHHHHHHhhcccCChhhhcceEEcCCCCchHHHhcccCCCCccccCCCCcCC
Q 009270 359 EFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVD 423 (538)
Q Consensus 359 E~L~rI~IINaP~~f~~lw~lVKpfL~~~Tr~KI~~lg~~~~~e~L~k~Id~d~LP~~yGG~~~d 423 (538)
++|+++||||+||+|.++|++|+|||+++|++||+|+++ ++.+.|.+||+ ++||++|||++.+
T Consensus 173 erl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 173 LKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGGEEFS 235 (262)
T ss_dssp SCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTCSSCC
T ss_pred hhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCCCCCC
Confidence 999999999999999999999999999999999999986 67899999999 9999999999753
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.6e-40 Score=340.82 Aligned_cols=199 Identities=18% Similarity=0.392 Sum_probs=167.5
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcC--CCccCccccccccc--ceEEeeccCCCCCcEEEEecCccCh
Q 009270 208 DDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG--IEALLNEDLGDDLE--KVVFMHGFDRDGHPVCYNVYGEFQN 283 (538)
Q Consensus 208 ~~~~D~~LLRFLRArkfdVekA~~mL~~~l~WRk~~~--iD~i~~~~~~~el~--k~~~l~G~Dk~GrPV~~~~~G~~d~ 283 (538)
...+|.+||||||||+||+++|.+||+++++||+.++ .+++..+.+...+. ..++++|+|++||||+|+++|++|+
T Consensus 88 ~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~ 167 (316)
T 3hx3_A 88 QEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQS 167 (316)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCT
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCC
Confidence 3578999999999999999999999999999999987 23332222222221 2357889999999999999999998
Q ss_pred hhhhhccccCHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEEEEeCCCCCCCCchhH----HHHHHHHHHhhcccccc
Q 009270 284 KQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKREL----RIATKQALQLLQDNYPE 359 (538)
Q Consensus 284 ~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~v~~iv~IiDl~g~sgl~~~~l----~~~~k~il~llq~~YPE 359 (538)
+++ +..+++|+.++++|.++... ..+++++++|+||+|+ ++.++ ...++.++.++|+|||+
T Consensus 168 ~~~---------~~~~~~r~~~~~lE~~l~~~---~~~v~g~v~IiD~~g~---sl~~~~~~~~~~~k~~~~~lq~~YPe 232 (316)
T 3hx3_A 168 QEI---------TFDEILQAYCFILEKLLENE---ETQINGFCIIENFKGF---TMQQAASLRTSDLRKMVDMLQDSFPA 232 (316)
T ss_dssp TTS---------CHHHHHHHHHHHHHHHTTSH---HHHHHCEEEEEECTTC---CHHHHHHCCHHHHHHHHHHHHTTSTT
T ss_pred CCC---------CHHHHHHHHHHHHHHHHhcc---cCCcceEEEEEECCCC---CHHHhccCChHHHHHHHHHHHHhhhh
Confidence 764 25789999999999886432 3467899999999966 34443 35689999999999999
Q ss_pred ccceEEEEeCChHHHHHHHhhcccCChhhhcceEEcCCCCchHHHhcccCCCCccccCCCCcCC
Q 009270 360 FVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVD 423 (538)
Q Consensus 360 ~L~rI~IINaP~~f~~lw~lVKpfL~~~Tr~KI~~lg~~~~~e~L~k~Id~d~LP~~yGG~~~d 423 (538)
+|+++||||+||+|.++|+++||||+++|++||+|+++ ..+.|.+|||+++||.+|||++++
T Consensus 233 rL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~--~~~~L~~~I~~~~LP~eyGG~~~~ 294 (316)
T 3hx3_A 233 WFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD--DLSGFYQEIDENILPSDFGGTLPK 294 (316)
T ss_dssp TEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET--CCHHHHHHSCGGGSBGGGTSSBCC
T ss_pred hhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC--CHHHHHhhCCHhhCcHhhCCCCCC
Confidence 99999999999999999999999999999999999975 346999999999999999999875
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=98.89 E-value=1.3e-09 Score=108.70 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=102.1
Q ss_pred ceEEeeccCCCCCcEEEEecCccChhhhhhccccCHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEEEEeCCCCCCCC
Q 009270 259 KVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPG 338 (538)
Q Consensus 259 k~~~l~G~Dk~GrPV~~~~~G~~d~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~v~~iv~IiDl~g~sgl~ 338 (538)
+.+|-.|.|++||||+++...+++...+ ..+.++.+.+..++.++ -....+|+|+.+.+.-.
T Consensus 11 ~ify~~G~d~dGrpViv~~~~~l~~~~~---------D~e~Ll~~vl~tl~~~~---------~~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 11 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSN 72 (256)
T ss_dssp TSEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGG
T ss_pred CCEEEcCcCCCCCEEEEEEeecCCCCCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEECCCCCccc
Confidence 3456669999999999999999986543 24566666666665442 13578999999775322
Q ss_pred chhHHHHHHHHHHhhccccccccceEEEEeCChHHHHHHHh-hcccCChhhhcceEEcCCCCchHHHhcccCCCCc
Q 009270 339 KRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTM-ISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHV 413 (538)
Q Consensus 339 ~~~l~~~~k~il~llq~~YPE~L~rI~IINaP~~f~~lw~l-VKpfL~~~Tr~KI~~lg~~~~~e~L~k~Id~d~L 413 (538)
.. -...++.+.+++...|...|+++||+|+++||...|.. .++|.+.+..+|+++++ ....|.++|+.++|
T Consensus 73 ~p-~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~---sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 73 RF-KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID---CPGKLAEHIEHEQQ 144 (256)
T ss_dssp CC-CHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES---STTGGGGTSCGGGC
T ss_pred CC-cHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC---CHHHHHhhcCHHHc
Confidence 22 25678999999999999999999999999999976655 56666668889999995 57789999987776
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=103.70 Aligned_cols=133 Identities=15% Similarity=0.164 Sum_probs=92.3
Q ss_pred ceEEeeccCCCCCcEEEEecCccChhhhhhccccCHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEEEEeCCCCCCCC
Q 009270 259 KVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPG 338 (538)
Q Consensus 259 k~~~l~G~Dk~GrPV~~~~~G~~d~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~v~~iv~IiDl~g~sgl~ 338 (538)
+.++-.|.|++|+||+++..++++...+ ..+.++-+.+..++.++ -..+.+|+|+.+.+.-
T Consensus 30 ~~f~~~g~d~dG~PViv~~~~~~~~~~~---------D~e~Lly~il~tl~~~~---------~~~y~lV~D~T~~~~~- 90 (290)
T 3peg_A 30 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPS- 90 (290)
T ss_dssp TTEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGG-
T ss_pred CeEEEeccCCCCCEEEEEEeecCCccCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEEcCCCCcc-
Confidence 3455568999999999999999986543 24555555555554332 1368899999977532
Q ss_pred chhHHHHHHHHHHhhccccccccceEEEEeCChHHHHH-HHhhcccCChhhhcceEEcCCCCchHHHhcccCCCCc
Q 009270 339 KRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAF-HTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHV 413 (538)
Q Consensus 339 ~~~l~~~~k~il~llq~~YPE~L~rI~IINaP~~f~~l-w~lVKpfL~~~Tr~KI~~lg~~~~~e~L~k~Id~d~L 413 (538)
+..-...++.+.+++...|...|+++||+|+++||... |.+.++|.+.+..+|+.+++. ...|..+|+++++
T Consensus 91 n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~---~~~L~~~i~~~~~ 163 (290)
T 3peg_A 91 NRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQQ 163 (290)
T ss_dssp GCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS---SCC----------
T ss_pred CCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC---HHHHHhhCCHHHh
Confidence 22225678899999999999999999999999998874 467788888888999999853 3458899987754
No 8
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=55.96 E-value=54 Score=28.10 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=49.6
Q ss_pred ccccccCCCceeEEEEEecCeeEEEEEEEecc----e--eeEEEEEeecCCCceEEEEecCcccCCCCcceecCeEEcCc
Q 009270 438 TEITVKPATKQNVEIIIYEKCTVVWEIRVVGW----E--VSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDE 511 (538)
Q Consensus 438 ~~v~V~~gs~~~v~i~V~~g~~L~WeF~t~~~----D--I~Fgi~f~~~~~g~~~~~V~~~~r~~~~~~pve~Gs~~~~e 511 (538)
..+.++.|....|.++-..+.=..|.+..... | +..+-.|.+...++.... .+...+.+. +. ..-.|++.+
T Consensus 13 ~ti~l~~Ge~~~I~L~~NPtTGY~W~~~~~~~~~l~~~~~~v~~~y~~~~~~~~~~~-~~~~~vG~g-G~-~~~~fka~~ 89 (121)
T 2cio_B 13 KTIRMVIGETFTIELESNPTTGYTWLRSGLAGTELSDCTFAIQSKFNNRAPHDNHKN-HRRLLVGAG-GT-MVLEVKALK 89 (121)
T ss_pred cEEEEcCCCEEEEEeCCCCCCCeEEEEecCccccCCCccEEEeeeEEcCCCCccccc-ccccEeCCC-ce-EEEEEEEec
Confidence 46889999988877776555569999877321 1 333334444322211000 000122221 22 467889999
Q ss_pred CcEEEEEEECCCC
Q 009270 512 LGKILLTVDNPTS 524 (538)
Q Consensus 512 pG~yvL~fDNs~S 524 (538)
+|++.|.|....+
T Consensus 90 ~G~~~i~~~Y~Rp 102 (121)
T 2cio_B 90 AGKHTLSLAYGRP 102 (121)
T ss_pred CceEEEEEEEECc
Confidence 9999999988766
No 9
>3m86_A Amoebiasin-2; cysteine protease inhibitor, protease, protein binding; HET: 1PE; 1.65A {Entamoeba histolytica} PDB: 3m88_A
Probab=52.86 E-value=78 Score=26.59 Aligned_cols=91 Identities=9% Similarity=0.109 Sum_probs=56.4
Q ss_pred CCccccccCCCceeEEEEEecCeeEEEEEEEecceeeEEEE-EeecCCCceEEEEecCcccCCCCcceecCeEEcCcCcE
Q 009270 436 PATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAE-FVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGK 514 (538)
Q Consensus 436 ~~~~v~V~~gs~~~v~i~V~~g~~L~WeF~t~~~DI~Fgi~-f~~~~~g~~~~~V~~~~r~~~~~~pve~Gs~~~~epG~ 514 (538)
.-..+.|+.|....|.++-....=..|.+...+.-+...-. |.... .+...+.+. +. ..-.|++.++|.
T Consensus 14 ~g~~I~v~~Ge~~~I~L~~NptTGY~W~~~~~~~~~~l~~~~~~~~p--------~~~~~vG~g-G~-~~~~f~a~~~G~ 83 (111)
T 3m86_A 14 DHATLHISFNDLIKIQLRTNPSTGYAWNIEYPTDTFSLSQDTIKAEP--------HPSGMVGFP-SI-REIQLKPLKVGT 83 (111)
T ss_dssp TTCEEEECTTCEEEEEEEECGGGTCEEEEECCTTTEEEEEEEEEECC--------CSTTTSSCS-EE-EEEEEEESSCEE
T ss_pred CCcEEEEcCCCEEEEEECCCCCCCeEEEEecCCCcEEEcccceEeCC--------CCCCCCCCC-ee-EEEEEEEeCCeE
Confidence 34578999999888888766555599998775332322111 11100 011122221 12 456788999999
Q ss_pred EEEEEECCCC------CceeEEEEEEee
Q 009270 515 ILLTVDNPTS------KKKKLLYRFKVE 536 (538)
Q Consensus 515 yvL~fDNs~S------~sKkv~Y~i~v~ 536 (538)
+.|.|....+ -.++..|.|.|+
T Consensus 84 ~~i~~~Y~RpWe~~~~~~~tf~~~V~V~ 111 (111)
T 3m86_A 84 TTIKLGYSRPWEKGKEPLRSLTYSVVIR 111 (111)
T ss_dssp EEEEEEEECTTCCSCCCSEEEEEEEEEC
T ss_pred EEEEEEEECccCCCCCcccEEEEEEEEC
Confidence 9999988766 357788888763
No 10
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=52.55 E-value=50 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=25.8
Q ss_pred ecCeEEcCcCcEEEEEEECCCCCceeEEEEEEeec
Q 009270 503 VCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEP 537 (538)
Q Consensus 503 e~Gs~~~~epG~yvL~fDNs~S~sKkv~Y~i~v~~ 537 (538)
+.|+|.+.+||+|.|..-+ |+. .+..|.+.|+.
T Consensus 85 ~~~~~~~~~pGkYYl~Vy~-y~~-~~g~Y~l~i~g 117 (121)
T 3jqw_A 85 LSGKFKADKPGRYYIHLYM-FNG-SYMPYRINIEG 117 (121)
T ss_dssp EEEEEEECSCEEEEEEEEE-EEC-SCEEEEEEEEE
T ss_pred EEEEEEeCCCeeEEEEEEE-ecC-CCccEEEEEEe
Confidence 6899999899999998876 332 25689988864
No 11
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=50.99 E-value=78 Score=26.42 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=48.2
Q ss_pred cccCCCceeEEEEEecCeeEEEEEEEecceeeEEEEEeecCCCceEEEEecCcccCCCCcceecCeEEcCcCcEEEEEEE
Q 009270 441 TVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVD 520 (538)
Q Consensus 441 ~V~~gs~~~v~i~V~~g~~L~WeF~t~~~DI~Fgi~f~~~~~g~~~~~V~~~~r~~~~~~pve~Gs~~~~epG~yvL~fD 520 (538)
+|.++....-.|....|.+|.=.+.+ .+..|-+ +.|..... . ..-....... ...+.+.++.|.|.|+.=
T Consensus 21 ~I~g~~~~~Y~~~a~aGQ~l~v~l~s--~~~~~~i-~~pg~~~~-~----~~~~~~~~~~--~~~~~~LP~sG~Y~I~V~ 90 (111)
T 4g9s_B 21 EIKGYDYDTYTFYAKKGQKVHVSISN--EGADTYL-FGPGIDDS-V----DLSRYSPELD--SHGQYSLPASGKYELRVL 90 (111)
T ss_dssp EEETTCCEEEEEEECTTCEEEEEESC--TTCEEEE-ECTTCSSC-E----ECSTTCTTCC--TTSCEECSSSEEEEEEEE
T ss_pred EEeCCCceEEEEEecCCCEEEEEEec--CCccEEE-ECCCCccc-c----ccccccccCC--ceEEEEecCCccEEEEEE
Confidence 35555555555555667777665543 3444543 23321111 0 0000111111 256778899999999986
Q ss_pred CCC---CCceeEEEEEEee
Q 009270 521 NPT---SKKKKLLYRFKVE 536 (538)
Q Consensus 521 Ns~---S~sKkv~Y~i~v~ 536 (538)
... .+.+...|++.|.
T Consensus 91 ~~r~~ar~~~~~~Y~L~v~ 109 (111)
T 4g9s_B 91 QTRNDARKNKTKKYNVDIQ 109 (111)
T ss_dssp CCHHHHHTTCEEEEEEEEE
T ss_pred eccchhccCCCcCEEEEEE
Confidence 443 3788899999874
No 12
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.63 E-value=24 Score=27.24 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=20.3
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHH
Q 009270 212 DVILLKFLRARDFKVRDAFVMIKN 235 (538)
Q Consensus 212 D~~LLRFLRArkfdVekA~~mL~~ 235 (538)
......||..++||++.|+..+-.
T Consensus 34 ~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 34 MDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 566789999999999999988743
No 13
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=50.51 E-value=8.2 Score=35.03 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=18.6
Q ss_pred CcceecCeEEcCcCcEEEEEEEC
Q 009270 499 DEPVVCQRFKVDELGKILLTVDN 521 (538)
Q Consensus 499 ~~pve~Gs~~~~epG~yvL~fDN 521 (538)
..+ ..|.|+|+.+|+|.+.|.=
T Consensus 62 yn~-~TG~FtaPv~GvY~Fsft~ 83 (160)
T 1gr3_A 62 YDP-RTGIFTCQIPGIYYFSYHV 83 (160)
T ss_dssp EET-TTTEEECSSCEEEEEEEEE
T ss_pred eeC-CCCEEEcccCCEEEEEEEE
Confidence 335 5999999999999999963
No 14
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=48.84 E-value=9.2 Score=33.28 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=18.2
Q ss_pred CcceecCeEEcCcCcEEEEEEE
Q 009270 499 DEPVVCQRFKVDELGKILLTVD 520 (538)
Q Consensus 499 ~~pve~Gs~~~~epG~yvL~fD 520 (538)
..+ ..|.|+|+.||+|.+.|.
T Consensus 37 yn~-~TG~Ftap~~G~Y~Fs~~ 57 (131)
T 2wnv_C 37 YDT-STGKFTCKVPGLYYFVYH 57 (131)
T ss_dssp EET-TTTEEECSSCEEEEEEEE
T ss_pred ccC-CCCEEEcccCCEEEEEEE
Confidence 345 599999999999999996
No 15
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=48.00 E-value=9.4 Score=33.32 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=18.9
Q ss_pred CCcceecCeEEcCcCcEEEEEEEC
Q 009270 498 TDEPVVCQRFKVDELGKILLTVDN 521 (538)
Q Consensus 498 ~~~pve~Gs~~~~epG~yvL~fDN 521 (538)
+..+ ..|.|+|+.||+|.+.|.=
T Consensus 32 ~yn~-~TG~Ftap~~G~Y~Fs~~~ 54 (134)
T 2wnv_A 32 PYQN-HSGRFVCTVPGYYYFTFQV 54 (134)
T ss_dssp CEET-TTTEEECCSCEEEEEEEEE
T ss_pred CccC-CCCEEECeeCCEEEEEEEE
Confidence 3345 5999999999999999953
No 16
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.69 E-value=38 Score=25.57 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.6
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 009270 211 TDVILLKFLRARDFKVRDAFVMIK 234 (538)
Q Consensus 211 ~D~~LLRFLRArkfdVekA~~mL~ 234 (538)
+......||.+++||++.|+..+-
T Consensus 29 ~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 29 SESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 367778999999999999998773
No 17
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=47.04 E-value=10 Score=33.30 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=18.6
Q ss_pred CCcceecCeEEcCcCcEEEEEEE
Q 009270 498 TDEPVVCQRFKVDELGKILLTVD 520 (538)
Q Consensus 498 ~~~pve~Gs~~~~epG~yvL~fD 520 (538)
+..+ ..|.|+|+.||+|.+.|.
T Consensus 35 ~yn~-~TG~Ftap~~G~Y~Fs~~ 56 (136)
T 2wnv_B 35 NYEP-RSGKFTCKVPGLYYFTYH 56 (136)
T ss_dssp CEET-TTTEEECSSCEEEEEEEE
T ss_pred cccC-CCCEEECCcCeEEEEEEE
Confidence 3345 599999999999999995
No 18
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=44.37 E-value=11 Score=34.15 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.0
Q ss_pred CcceecCeEEcCcCcEEEEEEE
Q 009270 499 DEPVVCQRFKVDELGKILLTVD 520 (538)
Q Consensus 499 ~~pve~Gs~~~~epG~yvL~fD 520 (538)
..+ ..|.|+|+.||+|.+.|.
T Consensus 46 yn~-~TG~FTaPv~GvY~Fsf~ 66 (162)
T 2ka3_A 46 YDP-ETGVFTAPLAGRYLLSAV 66 (162)
T ss_dssp EET-TTTEEECCCCEEEEEEEC
T ss_pred eEC-CCCEEECCCCeEEEEEEE
Confidence 335 589999999999999993
No 19
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=42.62 E-value=1e+02 Score=24.93 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 009270 208 DDRTDVILLKFLRARDFKVRDAFVMIKNT 236 (538)
Q Consensus 208 ~~~~D~~LLRFLRArkfdVekA~~mL~~~ 236 (538)
+...|..|.+-....+||+++|...+.+.
T Consensus 47 dsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 47 DAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 45679999999999999999999998654
No 20
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=41.53 E-value=27 Score=26.34 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 009270 208 DDRTDVILLKFLRARDFKVRDAFVMIKN 235 (538)
Q Consensus 208 ~~~~D~~LLRFLRArkfdVekA~~mL~~ 235 (538)
+..+...+-.-|++++.|++.|+.+|.+
T Consensus 21 P~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 21 PNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4578899999999999999999999864
No 21
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=38.57 E-value=99 Score=26.94 Aligned_cols=78 Identities=10% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCCccccccCCCceeEEEEEecCeeEEEEEEEecce------eeEEEEEeecCCCceEEEEecCcccCCCCcceecCeEE
Q 009270 435 DPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWE------VSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFK 508 (538)
Q Consensus 435 d~~~~v~V~~gs~~~v~i~V~~g~~L~WeF~t~~~D------I~Fgi~f~~~~~g~~~~~V~~~~r~~~~~~pve~Gs~~ 508 (538)
|.-..+.|+.|....|.++-....=..|.+...+.. +.+.-.|.|.+. ..+.+. +. ..-.|+
T Consensus 30 dn~~~I~v~~Ge~~~I~L~~NPTTGY~W~~~~~~~~~L~~~~~~v~~~y~p~~~----------~~vGag-G~-~~w~f~ 97 (131)
T 2h7w_A 30 HNGATLTVAVGELVEIQLPSNPTTGFAWYFEGGTKESPNESMFTVENKYFPPDS----------KLLGAG-GT-EHFHVT 97 (131)
T ss_dssp GTTCEEEECTTCEEEEEEEECGGGSCEEEBTTTBSSCSCTTTEEEEEEEECCTT----------CCTTCC-EE-EEEEEE
T ss_pred hCCCEEEEeCCCEEEEEeCCCCCCCeEEEEecCCCccccccceeecceeeeCCC----------CCcCCC-cE-EEEEEE
Confidence 444688999999888888766545589988653331 111222322111 122221 22 466789
Q ss_pred cCcCcEEEEEEECCCC
Q 009270 509 VDELGKILLTVDNPTS 524 (538)
Q Consensus 509 ~~epG~yvL~fDNs~S 524 (538)
+.++|.+.|.|-...+
T Consensus 98 A~~~G~~~i~~~Y~Rp 113 (131)
T 2h7w_A 98 VKAAGTHAVNLTYMRP 113 (131)
T ss_dssp ECSSEEEEEEEEEECT
T ss_pred EccCceEEEEEEEECc
Confidence 9999999999987765
No 22
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=35.29 E-value=19 Score=33.21 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=17.0
Q ss_pred ecCeEEcCcCcEEEEEEE
Q 009270 503 VCQRFKVDELGKILLTVD 520 (538)
Q Consensus 503 e~Gs~~~~epG~yvL~fD 520 (538)
..|.|+|+.+|+|.+.|.
T Consensus 83 ~TG~FTaPv~GvY~Fsft 100 (178)
T 1o91_A 83 QTGIFTCEVPGVYYFAYH 100 (178)
T ss_dssp TTTEEECCSCEEEEEEEE
T ss_pred CCCEEEcccCeEEEEEEE
Confidence 589999999999999996
No 23
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=34.73 E-value=1.2e+02 Score=25.92 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=24.3
Q ss_pred ecCeEEcCcCcEEEEEEECCCCCceeEEEEEEeec
Q 009270 503 VCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEP 537 (538)
Q Consensus 503 e~Gs~~~~epG~yvL~fDNs~S~sKkv~Y~i~v~~ 537 (538)
+.|+|.+. ||+|.|.+... +....|.+.|+.
T Consensus 89 ~~~~~~~~-pGkYYl~Vy~y---~~~g~Y~l~v~~ 119 (119)
T 1nqj_A 89 VSNKVKLR-PGKYYLLVYKY---SGSGNYELRVNK 119 (119)
T ss_dssp EEEEEEEC-SEEEEEEEEEE---ESCEEEEEEEEC
T ss_pred EEEEEEcC-CcEEEEEEEEe---CCCceEEEEEeC
Confidence 57888876 99999988763 456889988863
No 24
>2xr4_A Lectin; sugar binding protein, LUNG, pathogen; 1.90A {Burkholderia cenocepacia}
Probab=33.06 E-value=1.6e+02 Score=25.19 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=58.3
Q ss_pred CChhhhcceEEcCCCCchHHHhcccCCCCcccc-CCCCcCCCCCCCCCccccCC-CccccccCCCceeEEEEEec-C--e
Q 009270 384 MTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQ-YGGLSVDYCDCNPEFTIDDP-ATEITVKPATKQNVEIIIYE-K--C 458 (538)
Q Consensus 384 L~~~Tr~KI~~lg~~~~~e~L~k~Id~d~LP~~-yGG~~~d~~d~dp~c~~~d~-~~~v~V~~gs~~~v~i~V~~-g--~ 458 (538)
|++.|+=.+..+.+.....++.=|||-+..|+. |=|.... |. +-+-++..|+ -.|.|+|.. | |
T Consensus 9 LP~ni~Fg~ta~~Nsa~~QtikvyIdd~~~~~aT~~g~gt~-----------d~~~~t~~lnSg~-GkVriev~~nGkps 76 (116)
T 2xr4_A 9 LPPHIKFGVTALTHAANDQTIDIYIDDDPKPAATFKGAGAQ-----------DQNLGTKVLDSGN-GRVRVIVMANGRPS 76 (116)
T ss_dssp CCTTCEEEEEEEECSCSCCEEEEEETTCSSCSEEECCCSST-----------TEEEEEEEEECTT-SEEEEEEEETTEEC
T ss_pred CCCCcEEeEEEEeccCCceeEEEEeCCCCccceeeeccCcC-----------CCccceEEEecCC-CeEEEEEEeCCccc
Confidence 678888888777665677888889998888877 7777542 11 1122333343 566777764 4 7
Q ss_pred eEEEEEEEecceeeEEEEEee
Q 009270 459 TVVWEIRVVGWEVSYGAEFVP 479 (538)
Q Consensus 459 ~L~WeF~t~~~DI~Fgi~f~~ 479 (538)
.|+....+..+-.+|+|.=..
T Consensus 77 ~l~s~~~~l~~k~~~~iigae 97 (116)
T 2xr4_A 77 RLGSRQVDIFKKSYFGIIGSE 97 (116)
T ss_dssp EEEEEEEEETTTEEEEEEEEE
T ss_pred cceeeeeeccCCccEEEEEcc
Confidence 888888888899999997543
No 25
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=32.60 E-value=86 Score=26.72 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=56.8
Q ss_pred CCCCCcEEEEecCccChhhhhhccccCHHHHHHHHHHHHHHHHHHHHHhccCCCC--eeEEEEEEeCCCCCCCCchhHHH
Q 009270 267 DRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGG--VSTIFQVNDLKNSPGPGKRELRI 344 (538)
Q Consensus 267 Dk~GrPV~~~~~G~~d~~~l~~~~~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~--v~~iv~IiDl~g~sgl~~~~l~~ 344 (538)
+..+..+.+...|.++.. +|-. .+-.++..++ . .+. +.-++.+-|+. |+....++.
T Consensus 16 ~~~~~vl~v~~~G~lt~~--------------d~~~-l~~~l~~~l~---~-~~~~~i~ll~~~~~f~---G~~~~a~~~ 73 (126)
T 2q3l_A 16 SQDDFYLAFKAVGKLTHE--------------DYEQ-MTPLLESALA---G-IKTPEIVALIDITELD---GLSLHAAWD 73 (126)
T ss_dssp ETTEEEEEEEEEEEECHH--------------HHHH-HHHHHHHHTT---T-CCSSCEEEEEEEEEEE---EECHHHHHH
T ss_pred cCCCCEEEEEEEeeECHH--------------HHHH-HHHHHHHHHH---h-CCCceEEEEEEecCCC---CCCHHHHHH
Confidence 445555667666776543 3332 3444554432 1 334 55555555555 455544455
Q ss_pred HHHHHHHhhccccccccceEEEEeCChHHHHHHHhhcccCChh
Q 009270 345 ATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQR 387 (538)
Q Consensus 345 ~~k~il~llq~~YPE~L~rI~IINaP~~f~~lw~lVKpfL~~~ 387 (538)
-++..+ .|+ ..+.|+-||-.+.|...+-+++++|++-.
T Consensus 74 d~k~~~----~h~-~~~~RiAvV~d~~W~~~~~~~~~~~~~~e 111 (126)
T 2q3l_A 74 DLKLGL----KHG-KEFKRVAIIGQGELQEWATRVANWFTPGE 111 (126)
T ss_dssp HHHHHH----HHG-GGEEEEEEECCSHHHHHHHHHHHHHCSSE
T ss_pred HHHhhh----hHH-hcCCEEEEEcChHHHHHHHHHHhhccCCc
Confidence 444222 333 77889999999999999999999997753
No 26
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=29.78 E-value=27 Score=30.78 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=16.5
Q ss_pred ecCeEEcCcCcEEEEEEE
Q 009270 503 VCQRFKVDELGKILLTVD 520 (538)
Q Consensus 503 e~Gs~~~~epG~yvL~fD 520 (538)
..|.|+|+.+|+|.+.|.
T Consensus 38 sTG~FTaPv~G~Y~Fs~~ 55 (148)
T 4f3j_A 38 VTGKFTCQVPGVYYFAVH 55 (148)
T ss_dssp TTTEEECCSCEEEEEEEE
T ss_pred CCCeEECCcceEEEEEEE
Confidence 589999999999999985
No 27
>2c34_A ICP, inhibitor of cysteine peptidases; chagasin, immunoglobulin fold; NMR {Leishmania mexicana} SCOP: b.1.26.1
Probab=27.16 E-value=2.1e+02 Score=24.15 Aligned_cols=91 Identities=10% Similarity=0.122 Sum_probs=51.7
Q ss_pred CCCccccccCCCceeEEEEEecCeeEEEEEEE-ec----ceeeEEE--EEeecCCCceEEEEecCcccCCCCcceecCeE
Q 009270 435 DPATEITVKPATKQNVEIIIYEKCTVVWEIRV-VG----WEVSYGA--EFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRF 507 (538)
Q Consensus 435 d~~~~v~V~~gs~~~v~i~V~~g~~L~WeF~t-~~----~DI~Fgi--~f~~~~~g~~~~~V~~~~r~~~~~~pve~Gs~ 507 (538)
|.-..+.++.|....|.++-....=..|.+.. .+ .+-+..+ .|.++... ...+.+. +. ..-.|
T Consensus 12 d~~~~i~~~~Ge~~~I~L~~NPtTGY~W~~~~~~~~~~l~~~gl~~~s~y~~~~~~--------~~~vG~g-G~-~~~~f 81 (116)
T 2c34_A 12 DNDKWVDTHVGKTTEIHLKGNPTTGYMWTRVGFVGKDVLSDEILEVVCKYTPTPSS--------TPMVGVG-GI-YVVLV 81 (116)
T ss_dssp CCCCCEEECSSCCEEEEEECCTTSSCEEEETTCTTSSCCCCSSEEEEEEEECCCCS--------SSSSCCC-CE-EEEEE
T ss_pred cCCcEEEEcCCCEEEEEeCCCCCCCcEEEEecCCCcccccccccEEEEeEEeCCCC--------CCCcCCC-ce-EEEEE
Confidence 34457889999988887776555558998763 11 1111111 13321110 0112221 12 45678
Q ss_pred EcCcCcEEEEEEECCCC------CceeEEEEEEe
Q 009270 508 KVDELGKILLTVDNPTS------KKKKLLYRFKV 535 (538)
Q Consensus 508 ~~~epG~yvL~fDNs~S------~sKkv~Y~i~v 535 (538)
++..+|...|.|....+ ..++..+.|.|
T Consensus 82 ~a~~~G~~~i~~~Y~R~We~~~~~~~~f~~~V~V 115 (116)
T 2c34_A 82 KPRKRGHHTLELVYTRPFEGIKPENERYTLHLNV 115 (116)
T ss_dssp EECSSSSEEEEEEEEBTTTBCCTTSCEEEEEEEE
T ss_pred EEeCCceEEEEEEEECccCCCCCccEEEEEEEEE
Confidence 89999999999987655 23445555554
No 28
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=26.82 E-value=64 Score=21.45 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=18.4
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 009270 211 TDVILLKFLRARDFKVRDAFVMI 233 (538)
Q Consensus 211 ~D~~LLRFLRArkfdVekA~~mL 233 (538)
+.....+.|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44566789999999999998765
No 29
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=26.50 E-value=62 Score=27.43 Aligned_cols=85 Identities=9% Similarity=0.078 Sum_probs=48.1
Q ss_pred cccCCCceeEEEEEecCeeEEEEEEEecceeeEEEEEeecCCCceEEEEecCcccCCCCcceecCeE--EcCcCcEEEEE
Q 009270 441 TVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRF--KVDELGKILLT 518 (538)
Q Consensus 441 ~V~~gs~~~v~i~V~~g~~L~WeF~t~~~DI~Fgi~f~~~~~g~~~~~V~~~~r~~~~~~pve~Gs~--~~~epG~yvL~ 518 (538)
+|.++....-.+....|.+|.=.+ ..+.++-|.|+ .|..+..... .+... . ..++| ..+..|.|.|+
T Consensus 23 ~I~g~~~~~Y~~~a~aGQ~l~V~l-s~~~~~~f~I~-~P~~~~~~~l------~~g~~--~-~~~~~~g~LP~sG~Y~i~ 91 (114)
T 4dzg_A 23 SFTGYDTIHYTLVAXAGQTMTVXI-GGSSNANFNVF-APGAQPGQAE------AIGRN--D-GDGQWQGALPASGXYLIQ 91 (114)
T ss_dssp CCBTTCCEEEECCC-CCCEEEC-C-EESTTCEEEEE-CTTCCTTTSC------CSEEC--C-TTSCCEEECSSCC-CEEE
T ss_pred EecCCCceEEEEEecCCCEEEEEe-CCCCcEEEEEE-CCCCCcccce------ecccc--C-CcceEEEEecCCCcEEEE
Confidence 355666555555556677777777 55677778774 4532211000 01100 0 11234 78999999999
Q ss_pred EECCCC---CceeEEEEEEee
Q 009270 519 VDNPTS---KKKKLLYRFKVE 536 (538)
Q Consensus 519 fDNs~S---~sKkv~Y~i~v~ 536 (538)
.=-... +.+...|++.|.
T Consensus 92 V~~~r~~ar~~~~~~Y~L~i~ 112 (114)
T 4dzg_A 92 VYQMRASARRGEQVPHSLAVS 112 (114)
T ss_dssp EECCHHHHHTTCBCCEECEEE
T ss_pred EEeccchhccCCCCCeEEEEE
Confidence 876644 678889988773
No 30
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=25.03 E-value=48 Score=22.97 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.8
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 009270 211 TDVILLKFLRARDFKVRDAFVMIK 234 (538)
Q Consensus 211 ~D~~LLRFLRArkfdVekA~~mL~ 234 (538)
+......||.+++||++.|...+-
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 577889999999999999988763
No 31
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=22.37 E-value=77 Score=22.96 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 009270 208 DDRTDVILLKFLRARDFKVRDAFVMIKNT 236 (538)
Q Consensus 208 ~~~~D~~LLRFLRArkfdVekA~~mL~~~ 236 (538)
|..+-..+.+-|+++++|++.|..+|.+.
T Consensus 16 P~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 16 PAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34667788889999999999999998654
No 32
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.35 E-value=89 Score=24.14 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 009270 208 DDRTDVILLKFLRARDFKVRDAFVMIKNT 236 (538)
Q Consensus 208 ~~~~D~~LLRFLRArkfdVekA~~mL~~~ 236 (538)
+..+...+..-|+++++|++.|++.|...
T Consensus 30 P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 30 PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45778889999999999999999988654
No 33
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=22.04 E-value=44 Score=35.23 Aligned_cols=49 Identities=6% Similarity=-0.019 Sum_probs=0.0
Q ss_pred eeEEEEEeecCCCceEEEEecCcccC--CCCcceecCeEEcCcCcEEEEEEE
Q 009270 471 VSYGAEFVPEAKDKYTIIIQKPTKLS--PTDEPVVCQRFKVDELGKILLTVD 520 (538)
Q Consensus 471 I~Fgi~f~~~~~g~~~~~V~~~~r~~--~~~~pve~Gs~~~~epG~yvL~fD 520 (538)
+.|.+.....-......++...-.++ .+..+ ..|.|+|+.||+|.+.|.
T Consensus 27 vAFsa~~~~~~~~~~~~I~Fd~v~~N~G~~yn~-~TG~Ftapv~GvY~Fsf~ 77 (442)
T 4dou_A 27 SAFSVGLETYVTIPNMPIRFTKIFYNQQNHYDG-STGKFHCNIPGLYYFAYH 77 (442)
T ss_dssp CEEEEECSSCCC---CBCCCCEEEECTTCCEET-TTTEEECCSCEEEEEEEE
T ss_pred eEEEEEeCCCCCCCCceEEcCEEEECCCCCcCC-CCCEEeCCCCEEEEEEEE
No 34
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.01 E-value=98 Score=22.68 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=21.0
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHH
Q 009270 212 DVILLKFLRARDFKVRDAFVMIKNT 236 (538)
Q Consensus 212 D~~LLRFLRArkfdVekA~~mL~~~ 236 (538)
+.--++-|++.++|+++|...|..+
T Consensus 24 ~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 24 REANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4456899999999999999988764
No 35
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.23 E-value=83 Score=23.52 Aligned_cols=26 Identities=19% Similarity=-0.027 Sum_probs=21.6
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHHH
Q 009270 211 TDVILLKFLRARDFKVRDAFVMIKNT 236 (538)
Q Consensus 211 ~D~~LLRFLRArkfdVekA~~mL~~~ 236 (538)
++...++-|++.++|+++|.+.|..+
T Consensus 31 d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 31 DFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45566899999999999999988653
No 36
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=20.21 E-value=76 Score=23.06 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=21.2
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHH
Q 009270 211 TDVILLKFLRARDFKVRDAFVMIKN 235 (538)
Q Consensus 211 ~D~~LLRFLRArkfdVekA~~mL~~ 235 (538)
+....++-|++.++|++.|...|..
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5667789999999999999988865
Done!